BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780130|ref|YP_003064543.1| hypothetical protein
CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|323159216|gb|EFZ45206.1| DEAD box helicase [Escherichia coli E128010]
          Length = 435

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 233 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 292

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 293 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 352

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 353 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 412

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 413 ERRNSKRTVQDILLDAMKKRGI 434


>gi|218555139|ref|YP_002388052.1| hypothetical protein ECIAI1_2669 [Escherichia coli IAI1]
 gi|218361907|emb|CAQ99507.1| conserved hypothetical protein from bacteriophage origin
           [Escherichia coli IAI1]
          Length = 464

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|191174014|ref|ZP_03035531.1| dead box helicase [Escherichia coli F11]
 gi|190905705|gb|EDV65327.1| dead box helicase [Escherichia coli F11]
 gi|324014343|gb|EGB83562.1| SNF2 domain protein [Escherichia coli MS 60-1]
          Length = 464

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|323173123|gb|EFZ58754.1| DEAD box helicase [Escherichia coli LT-68]
          Length = 433

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGYILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 411 ERRNSKRTVQDILLDAMKKRGI 432


>gi|194429287|ref|ZP_03061814.1| dead box helicase [Escherichia coli B171]
 gi|194412695|gb|EDX28990.1| dead box helicase [Escherichia coli B171]
          Length = 464

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|188492213|ref|ZP_02999483.1| dead box helicase [Escherichia coli 53638]
 gi|188487412|gb|EDU62515.1| dead box helicase [Escherichia coli 53638]
 gi|332088071|gb|EGI93196.1| DEAD box helicase [Shigella boydii 5216-82]
          Length = 464

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE+IEA N+A+KT KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGESIEAPNAAAKTQKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|291283833|ref|YP_003500651.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
 gi|290763706|gb|ADD57667.1| Superfamily II DNA/RNA helicases, SNF2 family [Escherichia coli
           O55:H7 str. CB9615]
          Length = 463

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GA+Y D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGALYTDDTGSWSELHDTKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|260845245|ref|YP_003223023.1| putative phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
 gi|257760392|dbj|BAI31889.1| predicted phage-related DNA helicase [Escherichia coli O103:H2 str.
           12009]
          Length = 464

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRNSKRTVQDILLDAMKKRGI 463


>gi|331654021|ref|ZP_08355022.1| putative protein p41 [Escherichia coli M718]
 gi|331048870|gb|EGI20946.1| putative protein p41 [Escherichia coli M718]
          Length = 465

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 263 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 322

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 323 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 382

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 383 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 442

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 443 ERRNSKRTVQDILLDAMKKRGI 464


>gi|238920126|ref|YP_002933641.1| hypothetical protein NT01EI_2232 [Edwardsiella ictaluri 93-146]
 gi|238869695|gb|ACR69406.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 433

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 121/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 231 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDTGSWSELHDAKLQALDS 290

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 291 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 350

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 351 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 410

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QDLLL+A+KK  I
Sbjct: 411 ERRNSKRTVQDLLLDAMKKRGI 432


>gi|331648305|ref|ZP_08349394.1| putative protein p41 [Escherichia coli M605]
 gi|331042854|gb|EGI14995.1| putative protein p41 [Escherichia coli M605]
          Length = 464

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 164/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGSWSELHDTKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS  H
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASASH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LLNA+KK  I
Sbjct: 442 ERRNSKRTVQDILLNAMKKRGI 463


>gi|295096884|emb|CBK85974.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 466

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/202 (57%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E++ +L G+ IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 264 QHYREMEKEMFLELNGKGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL+KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 ILTEAAGAPVLVAYHWKHDLERLRKAFPKGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA  T+DE+V+
Sbjct: 384 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIATGTMDEMVM 443

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K  +QD+LL+A+KK  I
Sbjct: 444 ERRNSKRKVQDILLDAMKKRGI 465


>gi|330862108|emb|CBX72272.1| putative protein p41 [Yersinia enterocolitica W22703]
          Length = 432

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 159/202 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDL RL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLTRLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETIH 204
           R  +K  +QD+LL A+KK  + 
Sbjct: 411 RRDSKREVQDILLEAMKKRGLR 432


>gi|332160953|ref|YP_004297530.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665183|gb|ADZ41827.1| Dead box helicase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 432

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 160/202 (79%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +   +IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 231 QYKEMEKEMFLQIGDHDIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 290

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           + +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 291 VAEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 350

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 351 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 410

Query: 183 RLRTKSTIQDLLLNALKKETIH 204
           R  +K  +QD+LL A+KK  + 
Sbjct: 411 RRDSKREVQDILLEAMKKRGLR 432


>gi|262043428|ref|ZP_06016553.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039254|gb|EEW40400.1| SNF2 domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 464

 Score =  178 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 262 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 321

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 322 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNAGKIPVLFAHPASAGH 381

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 382 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAVDTMDEMVM 441

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 442 ERRDSKRTVQDILLDAMKKRGI 463


>gi|170023443|ref|YP_001719948.1| hypothetical protein YPK_1197 [Yersinia pseudotuberculosis YPIII]
 gi|169749977|gb|ACA67495.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
          Length = 463

 Score =  177 bits (448), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 121/202 (59%), Positives = 159/202 (78%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E++  +    IEA N+ASKT+KCLQLA+GA+Y DE  +W E+HD K++ALE I
Sbjct: 262 QYKEMEKEMFLQIGDHGIEAMNAASKTMKCLQLASGAIYTDEAGNWTEIHDAKLQALESI 321

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I +A+  P++VAYHF SDLARL KAFP+GR LD DP T ++WN G IP+LFAHPAS GHG
Sbjct: 322 ITEASGMPVLVAYHFKSDLARLLKAFPKGRHLDADPQTQRDWNAGLIPVLFAHPASAGHG 381

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GGNIL FFS WWDLE++QQ+IERIG TRQ QAG KR V++Y++IA++T+DELV +
Sbjct: 382 LNLQDGGNILAFFSHWWDLEQYQQIIERIGPTRQAQAGHKRPVWIYHIIAEDTVDELVKE 441

Query: 183 RLRTKSTIQDLLLNALKKETIH 204
           R  +K  +QD+LL A+KK  + 
Sbjct: 442 RRDSKREVQDILLEAMKKRGLR 463


>gi|204927042|ref|ZP_03218244.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323707|gb|EDZ08902.1| dead box helicase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 463

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 163/202 (80%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KTVKCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 261 QQYREMEKEMFLELNGEGIEAPNAAAKTVKCLQIASGAVYTDDAGSWSELHDAKLQALDS 320

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+ P T+++WN GKIP+LFAHPAS GH
Sbjct: 321 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQGPQTLRDWNAGKIPVLFAHPASAGH 380

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++I  +T+DE+V+
Sbjct: 381 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIITADTMDEMVM 440

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           +R  +K T+QD+LL+A+KK  I
Sbjct: 441 ERRNSKRTVQDILLDAMKKRGI 462


>gi|212712312|ref|ZP_03320440.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
 gi|212685058|gb|EEB44586.1| hypothetical protein PROVALCAL_03400 [Providencia alcalifaciens DSM
           30120]
          Length = 463

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 122/200 (61%), Positives = 163/200 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + ++E++ +L+ E +EA N+A+KTVKCLQ+A+GA+Y D+ K+W E+HD KI+ALE 
Sbjct: 264 KQYQEMEKEMFLELEHEGVEALNAAAKTVKCLQIASGAIYTDDSKNWVELHDTKIQALES 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II ++   PI+VAYH+  DL RL KAFP+GR LD DP T+++WN GKIP+LFAHPAS GH
Sbjct: 324 IISESGGMPILVAYHWKHDLERLLKAFPKGRNLDADPQTLRDWNAGKIPILFAHPASAGH 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG+ R VF+++LIA  T+DE+V+
Sbjct: 384 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGYNRPVFIHHLIAAGTMDEVVM 443

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +R  +K  IQDLLL A+K++
Sbjct: 444 ERRNSKREIQDLLLEAMKRK 463


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547866|gb|ACT57668.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 434 LQRLRTKSTIQDLLLNALKKETIHV 458


>gi|317120757|gb|ADV02578.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 460

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 256 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 316 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 375

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 376 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 435

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 436 LQRLRTKSTIQDLLLNALKKETIHV 460


>gi|317120700|gb|ADV02523.1| SNF2 Dead box helicase [Liberibacter phage SC1]
 gi|317120743|gb|ADV02565.1| SNF2 Dead box helicase [Liberibacter phage SC2]
 gi|317120804|gb|ADV02625.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|82777983|ref|YP_404332.1| hypothetical protein SDY_2798 [Shigella dysenteriae Sd197]
 gi|309784630|ref|ZP_07679265.1| DEAD box helicase [Shigella dysenteriae 1617]
 gi|81242131|gb|ABB62841.1| hypothetical bacteriophage protein [Shigella dysenteriae Sd197]
 gi|308927527|gb|EFP72999.1| DEAD box helicase [Shigella dysenteriae 1617]
          Length = 311

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 165/202 (81%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ 
Sbjct: 109 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 168

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A  AP++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GH
Sbjct: 169 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGH 228

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+
Sbjct: 229 GLNMQDGGNILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVM 288

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           ++  +K T+QD+LL+A+KK  I
Sbjct: 289 EQRNSKRTVQDILLDAMKKRGI 310


>gi|317120844|gb|ADV02665.1| SNF2 Dead box helicase [Candidatus Liberibacter asiaticus]
          Length = 461

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 200/205 (97%), Positives = 203/205 (99%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+CD+QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 257 LKLYRKFQRELFCDIQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 316

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 317 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 377 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 436

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 437 LQRLRTKSTIQDLLLNALKKETIHV 461


>gi|48697218|ref|YP_024948.1| putative helicase protein [Burkholderia phage BcepC6B]
 gi|47779024|gb|AAT38387.1| gp28 [Burkholderia phage BcepC6B]
          Length = 459

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 157/205 (76%), Gaps = 5/205 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           + Y   +R+++ ++    IEA N+ASKT+KCLQLANGAVY  E+       W EVHD K+
Sbjct: 252 RLYRDMERQMFMEIDDSPIEAMNAASKTMKCLQLANGAVYKQEDDGSDTAPWHEVHDLKL 311

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           +ALE I+E+A   P++VAYHF SDLARLQ+AFP+GR LD++P TI++WN GKIP++FAHP
Sbjct: 312 QALEEIVEEAAGMPVLVAYHFKSDLARLQRAFPRGRQLDQNPQTIRDWNAGKIPVMFAHP 371

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS GHGLNLQ GGNIL  F  WW+LEE+ Q++ERIG  RQ QAG +R VF+Y +IA++TI
Sbjct: 372 ASAGHGLNLQDGGNILAVFGHWWNLEEYLQIVERIGPVRQLQAGHRRPVFIYPIIARDTI 431

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           DE V++R  TK  +QD+LL+A+K+ 
Sbjct: 432 DEDVVERRETKRAVQDILLDAMKRR 456


>gi|9633588|ref|NP_051002.1| hypothetical protein APSE-1_41 [Acyrthosiphon pisum bacteriophage
           APSE-1]
 gi|9910955|sp|Q9T1Q7|VP41_BPAPS RecName: Full=Putative protein p41
 gi|6118036|gb|AAF03984.1|AF157835_41 P41 [Endosymbiont phage APSE-1]
          Length = 460

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 159/198 (80%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I+
Sbjct: 263 YHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESIV 322

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHGL
Sbjct: 323 NESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHGL 382

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++R
Sbjct: 383 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVMER 442

Query: 184 LRTKSTIQDLLLNALKKE 201
             +K  IQDLLL A+K++
Sbjct: 443 RNSKRAIQDLLLEAMKRK 460


>gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039807|gb|ACT56603.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205


>gi|212499736|ref|YP_002308544.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|238898727|ref|YP_002924408.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|75906050|gb|ABA29396.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|211731705|gb|ACJ10193.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|229466486|gb|ACQ68260.1| APSE-2 prophage; DEAD box helicase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 460

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 154/198 (77%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   ++EL+ +L    IEA N+A+KT+K LQ+A GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 263 YQAMEKELFLELGDSAIEALNAAAKTIKTLQIAAGAIYSDDNHNWTAIHDAKIQALESIV 322

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHGL
Sbjct: 323 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHGL 382

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++R
Sbjct: 383 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVMER 442

Query: 184 LRTKSTIQDLLLNALKKE 201
             +K  IQDLLL A+K++
Sbjct: 443 RNSKRAIQDLLLEAMKRK 460


>gi|315121969|ref|YP_004062458.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495371|gb|ADR51970.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 151/200 (75%), Positives = 178/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDENHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A   P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGGCPLLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGPLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|41179407|ref|NP_958716.1| Bbp47 [Bordetella phage BPP-1]
 gi|45569539|ref|NP_996608.1| DEAD box helicase [Bordetella phage BMP-1]
 gi|45580790|ref|NP_996656.1| DEAD box helicase [Bordetella phage BIP-1]
 gi|40950146|gb|AAR97712.1| Bbp47 [Bordetella phage BPP-1]
          Length = 464

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 124/202 (61%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKAL 59
           + Y   +RE +  L+ G  IEAFN+ASKT+KCLQLANGA+Y D+    W +VHD K++AL
Sbjct: 261 RLYRDMEREAFLALECGIEIEAFNAASKTIKCLQLANGAIYTDDTATTWADVHDVKLQAL 320

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           E I+ +A   P++VAYHF SDLARLQ+AFPQGR LD++P TI++WN GKIPLLFAHPAS 
Sbjct: 321 ESIVAEAAGMPVLVAYHFKSDLARLQRAFPQGRALDQNPQTIRDWNAGKIPLLFAHPASA 380

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+Y+++A +T+DEL
Sbjct: 381 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIYHIVATDTMDEL 440

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 441 VMARRESKREVQDLLLEAMKRR 462


>gi|71898992|ref|ZP_00681158.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731238|gb|EAO33303.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPETIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71276270|ref|ZP_00652548.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71162878|gb|EAO12602.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 160/202 (79%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71900964|ref|ZP_00683077.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71729269|gb|EAO31387.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 120/202 (59%), Positives = 160/202 (79%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28199029|ref|NP_779343.1| hypothetical protein PD1137 [Xylella fastidiosa Temecula1]
 gi|182681751|ref|YP_001829911.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057127|gb|AAO28992.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631861|gb|ACB92637.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307580180|gb|ADN64149.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71899887|ref|ZP_00682035.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71730327|gb|EAO32410.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71902063|ref|ZP_00684103.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728174|gb|EAO30365.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71901323|ref|ZP_00683419.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728907|gb|EAO31042.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG KR VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHKRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71275472|ref|ZP_00651758.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71163772|gb|EAO13488.1| SNF2-related [Xylella fastidiosa Dixon]
          Length = 472

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|28198299|ref|NP_778613.1| hypothetical protein PD0382 [Xylella fastidiosa Temecula1]
 gi|28199082|ref|NP_779396.1| hypothetical protein PD1194 [Xylella fastidiosa Temecula1]
 gi|182680936|ref|YP_001829096.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182681808|ref|YP_001829968.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28056369|gb|AAO28262.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|28057180|gb|AAO29045.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182631046|gb|ACB91822.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|182631918|gb|ACB92694.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307579404|gb|ADN63373.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 157/202 (77%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|170729638|ref|YP_001775071.1| hypothetical protein Xfasm12_0427 [Xylella fastidiosa M12]
 gi|167964431|gb|ACA11441.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 472

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71898924|ref|ZP_00681091.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71731336|gb|EAO33400.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|71274496|ref|ZP_00650784.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71900325|ref|ZP_00682460.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71164228|gb|EAO13942.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71729900|gb|EAO31996.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 472

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/202 (58%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|315122937|ref|YP_004063426.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496339|gb|ADR52938.1| SNF2 related protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 456

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 151/200 (75%), Positives = 179/200 (89%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y KFQREL+C++QGE + AFNSASKTVKCLQLANGAVY DE   WKEVH+ KI+AL+
Sbjct: 255 LKLYRKFQRELFCEIQGEPLVAFNSASKTVKCLQLANGAVYTDESHSWKEVHNAKIEALK 314

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E+A  +P++VAYHFNSDL RL KAFPQGR LDK+P TI++WN GKIPLLFAHPASC 
Sbjct: 315 AIVEEAGRSPVLVAYHFNSDLMRLFKAFPQGRHLDKNPQTIKDWNAGKIPLLFAHPASCA 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNILVFFSLWWDLE HQQMIERIG  RQ+QAGFKRAVF++YLIA++TIDEL+
Sbjct: 375 HGLNLQYGGNILVFFSLWWDLETHQQMIERIGTLRQKQAGFKRAVFIHYLIAEHTIDELI 434

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+RL+TK+T+Q++LLNALKK
Sbjct: 435 LKRLQTKATVQEILLNALKK 454


>gi|28199605|ref|NP_779919.1| hypothetical protein PD1730 [Xylella fastidiosa Temecula1]
 gi|182682346|ref|YP_001830506.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|28057720|gb|AAO29568.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632456|gb|ACB93232.1| SNF2-related protein [Xylella fastidiosa M23]
 gi|307578627|gb|ADN62596.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 472

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|273810423|ref|YP_003344894.1| helicase [Xylella phage Xfas53]
 gi|257097798|gb|ACV41104.1| helicase [Xylella phage Xfas53]
          Length = 472

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG +R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|170730331|ref|YP_001775764.1| hypothetical protein Xfasm12_1183 [Xylella fastidiosa M12]
 gi|167965124|gb|ACA12134.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 295

 Score =  158 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 158/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 80  RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 139

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 140 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 199

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 200 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 259

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 260 VMARRESKREVQDLLLEAVKRR 281


>gi|15837282|ref|NP_297970.1| hypothetical protein XF0680 [Xylella fastidiosa 9a5c]
 gi|9105562|gb|AAF83490.1|AE003912_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 117/201 (58%), Positives = 157/201 (78%), Gaps = 2/201 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ RLQ+AFP+GR LD+ P TI++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVTRLQRAFPKGRVLDQHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ++ERIG TRQ QAG  R VF+++++A NT+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIVERIGPTRQAQAGHDRPVFIHHIVAANTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+ R  +K  +QDLLL A+K+
Sbjct: 437 VMARRESKREVQDLLLEAVKR 457


>gi|71901494|ref|ZP_00683581.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|71728750|gb|EAO30894.1| SNF2-related [Xylella fastidiosa Ann-1]
          Length = 464

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/202 (58%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKHPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNILVFF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILVFFGHWWDLEQYQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A++++
Sbjct: 437 VMARRESKREVQDLLLEAVRRK 458


>gi|15839118|ref|NP_299806.1| hypothetical protein XF2528 [Xylella fastidiosa 9a5c]
 gi|9107736|gb|AAF85326.1|AE004060_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 472

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 116/202 (57%), Positives = 155/202 (76%), Gaps = 2/202 (0%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E+   L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKTMEQEMLIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LF HPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFVHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL FF  WWDLE++QQ+IERIG TRQ QAG  R VF+++++A  T+DEL
Sbjct: 377 GHGLNLQDGGNILAFFGHWWDLEQYQQIIERIGPTRQAQAGHDRPVFIHHIVAAGTVDEL 436

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V+ R  +K  +QDLLL A+K+ 
Sbjct: 437 VMARRESKREVQDLLLEAVKRR 458


>gi|157311154|ref|YP_001469199.1| helicase [Streptococcus phage P9]
 gi|119104303|gb|ABL61048.1| helicase [Streptococcus phage P9]
          Length = 440

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+Y  + K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLVNKLLQMANGAIYDAD-KTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L      + +WN G+IP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGRIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|323693306|ref|ZP_08107524.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502789|gb|EGB18633.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 447

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/197 (41%), Positives = 112/197 (56%), Gaps = 7/197 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + ++EL  +L    I A N+AS T K  QLANGA+ Y +     E HD K+ ALE II
Sbjct: 256 YEELKQELVLELPDGEITAANAASLTGKLSQLANGAI-YSDTGDTIEFHDRKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL+R++          K    I +WN GKIP+   HPAS GHGL
Sbjct: 315 ESANGKPVLVAYWFKHDLSRIK--KRFDVREIKSSKDITDWNAGKIPVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+    Q        V + ++I + TIDE +L+ 
Sbjct: 373 NLQAGGSTLIWFGLTWSLELYQQTNARLWRQGQTSG----TVVIEHIITKGTIDERILKA 428

Query: 184 LRTKSTIQDLLLNALKK 200
           L  K   Q+ L++A+K 
Sbjct: 429 LSKKELTQNALIDAVKA 445


>gi|71911260|ref|YP_282810.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94989079|ref|YP_597180.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94992970|ref|YP_601069.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
 gi|71854042|gb|AAZ52065.1| phage-related DNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542587|gb|ABF32636.1| phage-related DNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94546478|gb|ABF36525.1| phage-related DNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 440

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAI-YDDDKSTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  D  RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 DIVEESQGQPILVFYQYQHDFERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|167630964|ref|YP_001681463.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
 gi|167593704|gb|ABZ85452.1| phage-associated helicase, snf2 family [Heliobacterium
           modesticaldum Ice1]
          Length = 452

 Score =  152 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +REL   L+G+ I+A ++AS + K LQ+ANGAV Y ++     +H  K+ ALE 
Sbjct: 254 KVYETMKRELVLSLEGQEIDAGSAASLSNKLLQMANGAV-YADDGSVVNIHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+E AN  P+++AY +  DL R+ K FP  R    D   I+ WN+G+IP+   HPAS GH
Sbjct: 313 ILEAANGKPVLIAYWYKHDLNRILKRFPAERLDSVDS--IRRWNDGEIPVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+      + G K  V ++++I + TIDE V+
Sbjct: 371 GLNLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHIITKGTIDEQVM 425

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + LR K   Q  L++A+K 
Sbjct: 426 KALRLKDKTQTALIDAVKA 444


>gi|167757891|ref|ZP_02430018.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
 gi|167664545|gb|EDS08675.1| hypothetical protein CLOSCI_00222 [Clostridium scindens ATCC 35704]
          Length = 454

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 8/205 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y  F+R+L   L    I A N+A+ + K  Q+ANGAV Y ++     +HD K+ ALE
Sbjct: 253 VQRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAV-YTDDGETIAIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPA 117
            IIE     P++VAY F  DL R+     + +          +I  WN G++P+   HPA
Sbjct: 312 DIIESMGGKPLLVAYWFRHDLERIAGRLHKLKIPFSRLDSSESIHRWNAGELPVALIHPA 371

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V V ++I + TID
Sbjct: 372 SAGHGLNLQSGGSTLVWFGLTWSLELYQQTNARLWR----QGQQSDTVVVQHIITKGTID 427

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +++ L  K T Q  L+ A+K + 
Sbjct: 428 ERIMKALSEKDTTQAALIEAVKADL 452


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  151 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 112/187 (59%), Positives = 152/187 (81%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH
Sbjct: 346 DEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYH 405

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS
Sbjct: 406 WKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFS 465

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+QD+LL+
Sbjct: 466 HWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDILLD 525

Query: 197 ALKKETI 203
           A+KK  I
Sbjct: 526 AMKKRGI 532


>gi|306826832|ref|ZP_07460132.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
 gi|304430850|gb|EFM33859.1| SNF2 domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 440

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 123/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAI-YDDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|225573262|ref|ZP_03782017.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039394|gb|EEG49640.1| hypothetical protein RUMHYD_01453 [Blautia hydrogenotrophica DSM
           10507]
          Length = 454

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 112/204 (54%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y  F+R+L   L    I A N+A+ + K  Q+ANGAVY DE      +HD K+ ALE 
Sbjct: 254 QRYVSFKRDLLLQLPDGEITAANAAALSGKLSQMANGAVYTDE-GETIAIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           IIE     P++VAY F  DL R+     + +          +I+ WN G++P+   HPAS
Sbjct: 313 IIESMGGKPLLVAYWFRHDLERITGRLHKLKIPFSRLDSSKSIRRWNSGELPVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + ++I + TIDE
Sbjct: 373 AGHGLNLQSGGSTLVWFGLTWSLELYQQTNARLWR----QGQQSDIVVIQHIITKGTIDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +++ L  K T Q  L+ A+K + 
Sbjct: 429 RIMKALSEKDTTQAALIEAVKADL 452


>gi|313898006|ref|ZP_07831545.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312957034|gb|EFR38663.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 447

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/197 (41%), Positives = 111/197 (56%), Gaps = 7/197 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + + +L  +L    I A N+AS T K  QLANGA+ Y +     E HD K+ ALE II
Sbjct: 256 YEELKSDLVLELPDGEITAANAASLTGKLSQLANGAI-YSDTGEIIEFHDRKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL+R++          K    I +WN GKIP+   HPAS GHGL
Sbjct: 315 ESANGKPVLVAYWFKHDLSRIK--KRFDVREIKSSKDITDWNAGKIPVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ L++F L W LE +QQ   R+    Q        V + ++I + TIDE +L+ 
Sbjct: 373 NLQAGGSTLIWFGLTWSLELYQQTNARLWRQGQTSG----TVVIEHIITKGTIDERILKA 428

Query: 184 LRTKSTIQDLLLNALKK 200
           L  K   Q+ L++A+K 
Sbjct: 429 LSKKELTQNALIDAVKA 445


>gi|225871338|ref|YP_002747285.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
 gi|225700742|emb|CAW95382.1| SNF2 family phage protein [Streptococcus equi subsp. equi 4047]
          Length = 440

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKDKEISAANSAVLANKLLQMANGAI-YDDDKTTVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|57234142|ref|YP_181811.1| SNF2 domain-containing protein [Dehalococcoides ethenogenes 195]
 gi|57224590|gb|AAW39647.1| SNF2 domain protein [Dehalococcoides ethenogenes 195]
          Length = 448

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 110/200 (55%), Gaps = 7/200 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   ++E    L    + A N+AS T K  QLANGA+ Y +     E HD K+ ALE II
Sbjct: 256 YEDLKQEFILQLPDGEVTAANAASLTGKLSQLANGAI-YADTGEIIEFHDRKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL+R++  F            I +WN GKIP+   HPAS GHGL
Sbjct: 315 EAANEKPLLVAYWFRHDLSRIKNRFNVREIKTSRD--IADWNAGKIPVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ LV+F L W LE +QQ   R+      Q      V + ++I + TIDE +++ 
Sbjct: 373 NLQAGGSTLVWFGLTWSLELYQQTNARLWR----QGQESHTVVIQHIITKGTIDERIMRA 428

Query: 184 LRTKSTIQDLLLNALKKETI 203
           L  K   Q  L++A+K E +
Sbjct: 429 LTKKELTQSALIDAVKAEVV 448


>gi|139473885|ref|YP_001128601.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
 gi|134272132|emb|CAM30377.1| SNF2 family phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 440

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 123/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAI-YDDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|167039884|ref|YP_001662869.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300915304|ref|ZP_07132618.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307724792|ref|YP_003904543.1| SNF2-like protein [Thermoanaerobacter sp. X513]
 gi|166854124|gb|ABY92533.1| SNF2-related protein [Thermoanaerobacter sp. X514]
 gi|300888580|gb|EFK83728.1| SNF2-related protein [Thermoanaerobacter sp. X561]
 gi|307581853|gb|ADN55252.1| SNF2-related protein [Thermoanaerobacter sp. X513]
          Length = 449

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 125/205 (60%), Gaps = 8/205 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK     +R+L  +++GE + A N+A+ + K LQ+ANGAV YD+      +HD K+ ALE
Sbjct: 253 MKTLDTMKRDLITNVKGEEVTAANAAALSGKLLQMANGAV-YDDHGTVLYIHDRKLDALE 311

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +IE AN  P+++AY F  DL+R+QK F        D   I+ WN+G+IP+   HPAS G
Sbjct: 312 DLIEAANGKPVLIAYWFKHDLSRIQKRFEVEVLSTSDS--IKRWNDGEIPIAVIHPASAG 369

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ LV+F L W LE +QQ   R+      + G K  V +++LI++ TIDE V
Sbjct: 370 HGLNLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHLISKGTIDERV 424

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           ++ L  K+  Q  L++A+K     V
Sbjct: 425 MKALNDKNNTQSALIDAVKATLKEV 449


>gi|313618477|gb|EFR90480.1| putative protein p41 [Listeria innocua FSL S4-378]
          Length = 450

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+ ++  +L  + I+A N+A  + K LQ+ANGAVY  E K    +HD+K+ ALE 
Sbjct: 254 KVYSDFKEDMVANLGDDEIDAVNAAVLSGKLLQMANGAVYDSENKAHV-IHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++  FP      +    I++WN+GKIP+   HPAS GH
Sbjct: 313 LIEGANGKPVLVAYWFKHDLERIKNRFP--VRKIQSSKDIEDWNDGKIPIAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+      + G +  V V+++I +NTIDE VL
Sbjct: 371 GLNLQSGGSTLIWFGLTWSLELYQQTNARL-----YRQGQRDTVIVHHIITKNTIDEDVL 425

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L  K   QD L++A+K 
Sbjct: 426 LALTKKEKTQDALIDAVKA 444


>gi|298253802|ref|ZP_06977391.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
 gi|297532138|gb|EFH71111.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           5-1]
          Length = 479

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 8/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + ++   L+G+ I+A N+AS + K LQ+A GAV Y+E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKADMVVSLEGKEIDAINAASLSNKLLQMAGGAV-YNEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F       K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRFN--VREIKTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+      + G    V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARL-----NRQGQTSTVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K+ +QD L+ ++K   
Sbjct: 426 RALSMKAKVQDALIESVKARL 446


>gi|28895337|ref|NP_801687.1| hypothetical protein SPs0425 [Streptococcus pyogenes SSI-1]
 gi|28810583|dbj|BAC63520.1| hypothetical protein (phage associated) [Streptococcus pyogenes
           SSI-1]
          Length = 442

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 249 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAI-YDDDKATVAIHDDKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 308 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 363

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 364 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 418

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 419 LRILQGKEKNQNALLEAVKAQL 440


>gi|300853544|ref|YP_003778528.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433659|gb|ADK13426.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 453

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 122/201 (60%), Gaps = 8/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   +++L   L+GE I+A N+A+ + K  Q+ANGAV Y E+K    +HD+K+ ALE 
Sbjct: 254 KAYDGMKQDLVLSLKGEEIDAVNAAALSNKLCQMANGAV-YGEDKRVFTIHDKKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY FN DL R++K F       K    I+ WN G+I +   HPAS GH
Sbjct: 313 LIESANGKPVLVAYWFNHDLERIKKRFK--VREIKTSKDIKNWNNGEIEVAVIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE ++
Sbjct: 371 GLNLQAGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDIM 425

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + LR K  +Q  L+ A+K + 
Sbjct: 426 RALRRKEKVQSDLIAAVKAKL 446


>gi|21910976|ref|NP_665244.1| putative helicase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876470|ref|NP_795678.1| putative helicase [Streptococcus pyogenes phage 315.6]
 gi|50913383|ref|YP_059355.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|21905184|gb|AAM80047.1| putative helicase - phage-associated [Streptococcus pyogenes
           MGAS315]
 gi|50902457|gb|AAT86172.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 440

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 10/202 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAI-YDDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 NVVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           L+ L+ K   Q+ LL A+K + 
Sbjct: 417 LRILQGKEKNQNALLEAVKAQL 438


>gi|42779467|ref|NP_976714.1| phage-associated helicase [Bacillus cereus ATCC 10987]
 gi|42735383|gb|AAS39322.1| phage-associated helicase [Bacillus cereus ATCC 10987]
          Length = 453

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++     +HD K+ ALE +
Sbjct: 255 VYDRFREEMVLEFADEEIDAMNAAVLSGKLLQMANGAIYDDDKNTHI-IHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++          K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIK--AKFNVREIKTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 427 ALRRKEKTQSDLINAVKA 444


>gi|220930213|ref|YP_002507122.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000541|gb|ACL77142.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 453

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++K    +HD K+ ALE +
Sbjct: 255 VYDHFREEMVLEFGDEEIDAMNAAVLSGKLLQMANGAIYDDDKKPHI-IHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++  F       K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIKAKFN--VREIKTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G K  V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQKETVVIHHIITKGTIDEDVMG 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 427 ALKRKEKTQTDLINAVKA 444


>gi|297242712|ref|ZP_06926650.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
 gi|296888923|gb|EFH27657.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
          Length = 479

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 8/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++   L+G+ I+A N+A  + K LQ+A GAV Y+E+K    +HD K+ ALE 
Sbjct: 254 KLYDELKQDMVVSLEGKEIDAINAAYLSNKLLQMAGGAV-YNEKKESVHIHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  DL R++K F       K    I +WN G IP+   HPAS GH
Sbjct: 313 LIEAANGKPVLVAYWFKHDLERIKKRFN--VREIKTSADIADWNAGMIPVALIHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ L++FSL W LE +QQ   R+      + G    V ++++I +NTIDE V+
Sbjct: 371 GLNLQAGGSTLIWFSLTWSLELYQQTNARL-----NRQGQTGTVVIHHIITKNTIDEDVM 425

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K+ +QD L++++K   
Sbjct: 426 RALSMKAKVQDALIDSVKARL 446


>gi|209559301|ref|YP_002285773.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
 gi|209540502|gb|ACI61078.1| Putative helicase-phage associated [Streptococcus phage NZ131.2]
          Length = 440

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 123/201 (61%), Gaps = 10/201 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y + + +L  + + + I A NSA    K LQ+ANGA+ YD++K    +HD+K+ ALE
Sbjct: 247 MKAYKQLEADLVLEFKNKEISAANSAVLANKLLQMANGAI-YDDDKATVAIHDDKLDALE 305

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I+E++   PI+V Y +  DL RL+K FPQ   L      + +WN GKIP+L  HP S G
Sbjct: 306 NIVEESQGQPILVFYQYQHDLERLKKRFPQAEELTS----VDKWNSGKIPILLCHPQSAG 361

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G    V V++++A+NT+DE V
Sbjct: 362 HGLNLQKGGHIIVWFGLTWSLEYYQ-----QANARLDRQGQTEPVIVHHIVAENTVDEKV 416

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           L+ L+ K   Q+ LL A+K +
Sbjct: 417 LRILQGKEKNQNDLLEAVKAQ 437


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 152/187 (81%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E IEA N+A+KT+KCLQ+A+GAVY D+   W E+HD K++AL+ I+ +A  AP++VAYH
Sbjct: 262 DEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYH 321

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GG ILVFFS
Sbjct: 322 WKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFS 381

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V+++  +K T+Q++LL+
Sbjct: 382 HWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQNILLD 441

Query: 197 ALKKETI 203
           A+KK  I
Sbjct: 442 AMKKRGI 448


>gi|273810587|ref|YP_003344968.1| gp33 [Sodalis phage SO-1]
 gi|258619872|gb|ACV84125.1| gp33 [Sodalis phage SO-1]
          Length = 474

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 139/208 (66%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFESELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  L K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVALGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNFEHFSQIVERIGPVRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DELV +R  +K  IQD L+  +K +
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMKAK 470


>gi|134299061|ref|YP_001112557.1| SNF2-like protein [Desulfotomaculum reducens MI-1]
 gi|134051761|gb|ABO49732.1| SNF2-related protein [Desulfotomaculum reducens MI-1]
          Length = 454

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 121/201 (60%), Gaps = 7/201 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + +R+L   L   ++ A  +A    K LQ+ANGAV YDE    +E H  K++ALE +
Sbjct: 255 QYEQLERDLLLPLADGDVVANTAAVLANKLLQMANGAV-YDENGMAQEFHKAKLEALEGV 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE+A   P++V Y +  DL R+++ F Q +  + K    I+ WN+GK+ ++ AHPAS GH
Sbjct: 314 IEEAAGKPVLVFYSYRHDLDRIKEHFKQYKPKELKTAEDIKNWNDGKVQIMLAHPASAGH 373

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGNI+ +FS  W LE +Q         R  + G +RAV +++L+A+ TIDE V+
Sbjct: 374 GLNLQAGGNIIAWFSTPWSLELYQ-----QANARLHRQGQQRAVIIHHLVAKGTIDEDVI 428

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q+ LL A+K   
Sbjct: 429 RVLGYKERGQNALLEAVKARI 449


>gi|225220074|ref|YP_002720041.1| helicase [Enterobacteria phage SSL-2009a]
 gi|224986015|gb|ACN74579.1| helicase [Enterobacteria phage SSL-2009a]
          Length = 474

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 102/208 (49%), Positives = 139/208 (66%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHDEKI 56
           K Y +F+ EL+ +L+   +EA N+ASKT+KCLQLA+GAVY  +E       W ++HD K+
Sbjct: 263 KIYDQFEAELFAELESGTVEAANAASKTIKCLQLASGAVYKVDEDGERTDEWVKIHDAKL 322

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+ N AP++VAY +  DLARL+K FP G  + K       ++ WN G+IP++F
Sbjct: 323 DALESIVEELNGAPLLVAYQYKHDLARLKKKFPHGVAMGKGKQGNKDMEAWNRGEIPIMF 382

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPAS GHGLNLQ GG+ L  FS  W+ E   Q++ERIG  RQ QAG  R VFVY + A+
Sbjct: 383 AHPASAGHGLNLQDGGHHLAIFSDTWNYEHFAQIVERIGPIRQMQAGHPRPVFVYIIQAR 442

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DELV +R  +K  IQD L+  +K +
Sbjct: 443 GTLDELVAERRDSKRDIQDDLMEYMKAK 470


>gi|154504835|ref|ZP_02041573.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
 gi|153794718|gb|EDN77138.1| hypothetical protein RUMGNA_02345 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 122/201 (60%), Gaps = 9/201 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAV YDE  + + +HD K+ ALE 
Sbjct: 251 LYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAV-YDESGNVRNIHDRKLDALED 309

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+ K FP      K    I++WNEGKIP+   HPAS GH
Sbjct: 310 LIESANGKPLLVAYWFKHDRERILKRFPARDINTK--KDIEDWNEGKIPVALIHPASAGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +L
Sbjct: 368 GLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDIL 422

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + +  K   Q+ ++ A+K   
Sbjct: 423 RAIEKKDNTQNAMIEAVKARI 443


>gi|300933380|ref|ZP_07148636.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 454

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 125/201 (62%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+ YDEE +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAI-YDEEGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ +  PQ R L      I+ WNEG IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRQRITERLPQARELT-TSADIEAWNEGGIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L + +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLASADTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
             L +K+ IQ  L++A+  E 
Sbjct: 427 AALESKNDIQSALIDAVTSEL 447


>gi|304389862|ref|ZP_07371821.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327038|gb|EFL94277.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 458

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L   L  E I+A N+A+ + K LQLA+GA+Y  +   W  VHD K+ ALE 
Sbjct: 254 KVYEQLKADLVLQLGDETIDAANAAALSGKLLQLASGAIYTGD-GDWASVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E  N  P++VAY F  D  R+   FPQ R   K    I+ WN+G+I     HPAS GH
Sbjct: 313 LVEATNGNPLLVAYWFTHDRERITARFPQAR-ELKTSADIEAWNKGEITFGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  L+NA+ +E 
Sbjct: 427 RALDVKDATQAALINAVAQEI 447


>gi|153955274|ref|YP_001396039.1| Phage-related DNA helicase [Clostridium kluyveri DSM 555]
 gi|146348132|gb|EDK34668.1| Predicted Phage-related DNA helicase [Clostridium kluyveri DSM 555]
          Length = 453

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++     +HD K+ ALE +
Sbjct: 255 VYDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIYDDDKNTHI-IHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++          K    I++WN G I +   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYNHDLERIK--AKFNVREIKTSKDIKDWNNGDISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 372 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 427 ALRRKEKTQSDLINAVKA 444


>gi|219855697|ref|YP_002472819.1| hypothetical protein CKR_2354 [Clostridium kluyveri NBRC 12016]
 gi|219569421|dbj|BAH07405.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 469

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ E+  +   E I+A N+A  + K LQ+ANGA+Y D++     +HD K+ ALE +
Sbjct: 271 VYDHFREEMVFEFADEEIDAMNAAVLSGKLLQMANGAIYDDDKNTHI-IHDRKLDALEDL 329

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY +N DL R++          K    I++WN G I +   HPAS GHG
Sbjct: 330 IEGANGKPVLIAYWYNHDLERIK--AKFNVREIKTSKDIKDWNNGDISVAVIHPASAGHG 387

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++F L W LE +QQ   R+      + G    V ++++I + TIDE V+ 
Sbjct: 388 LNLQSGGSTLIWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIITKGTIDEDVMN 442

Query: 183 RLRTKSTIQDLLLNALKK 200
            LR K   Q  L+NA+K 
Sbjct: 443 ALRRKEKTQSDLINAVKA 460


>gi|57233543|ref|YP_180823.1| SNF2 family helicase [Dehalococcoides ethenogenes 195]
 gi|57223991|gb|AAW39048.1| SNF2 family helicase, putative [Dehalococcoides ethenogenes 195]
          Length = 513

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y + +++L   L   +I A N+A+ T K  QLANGA+ Y ++     +HD K+ ALE 
Sbjct: 313 QRYDELKQDLVLQLPDGDITAANAAALTGKLCQLANGAI-YTDDGDTFTIHDRKLDALEN 371

Query: 62  IIEKANAAPIIVAYHFNSDLAR---LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           IIE A+  PI+VAY F  DLAR     +      +      +I++WN G++P+   HPAS
Sbjct: 372 IIEAASGKPILVAYWFKHDLARITERLQKLHIPFSKLDSADSIRKWNAGELPVALIHPAS 431

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ +V+F L W LE +QQ   R+      Q      V V +++A++TIDE
Sbjct: 432 AGHGLNLQSGGSCIVWFGLTWSLELYQQTNARLWR----QGQNAETVVVQHIVAKDTIDE 487

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +L+ L  K + Q  L+ A+K + 
Sbjct: 488 RILKVLSKKDSTQAALIAAVKADL 511


>gi|211731851|gb|ACJ10150.1| DEAD box helicase [Bacteriophage APSE-4]
          Length = 442

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 104/180 (57%), Positives = 143/180 (79%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 263 YHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALESIV 322

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGHGL
Sbjct: 323 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGHGL 382

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V++R
Sbjct: 383 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVMER 442


>gi|304406781|ref|ZP_07388436.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344314|gb|EFM10153.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 467

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K +++L   ++G  I A ++A  T K LQL NGA+Y  + +   E+HD KI+A   
Sbjct: 265 KLYDKLEKDLLLQVEGTEITATSAAVLTGKLLQLCNGALYDGDRQVH-EIHDNKIEAFME 323

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           +IE+ N    +V Y +  DLAR++ A  +     ++   P    +WN G++ +L AHPAS
Sbjct: 324 LIEQLNGKSALVFYSYQHDLARIKSALSKSGLRIRELSTPQDQLDWNAGEVDILLAHPAS 383

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +V+F L W LE +Q         R  + G K+ V +++L+ Q   DE
Sbjct: 384 AAYGLNLQDGGNHVVWFGLNWSLELYQ-----QANGRLHRQGQKQKVILHHLVVQGGADE 438

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+  L  K+ +QD LL ALK     V
Sbjct: 439 DVMAALEGKAAMQDKLLEALKARIERV 465


>gi|300856809|ref|YP_003781793.1| putative phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300436924|gb|ADK16691.1| predicted phage related DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 443

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/202 (42%), Positives = 120/202 (59%), Gaps = 9/202 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++L  +L  E+I A N+A  T K LQ++NGA+ Y E+K   ++HDEK+KAL  II
Sbjct: 240 YKELEKDLVLELGKEDITAANAAVLTNKLLQMSNGAI-YSEDKKVVKIHDEKLKALFEII 298

Query: 64  EKANAAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           E AN  P++V Y F  D  R+              KD   I+ WN+G+IP+L  HPAS G
Sbjct: 299 EAANGKPVLVFYSFKHDFDRIINFLSSKKLKAVGLKDSADIKRWNKGEIPILLIHPASAG 358

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNI+V+F L W LE +Q         R  + G K  V + ++IA+ T+DE V
Sbjct: 359 HGLNLQYGGNIIVWFGLTWSLELYQ-----QANARLHRQGQKETVVINHIIAKGTVDEDV 413

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           ++ L  K   Q++LL A+K   
Sbjct: 414 MKSLGNKKVNQNILLEAVKARL 435


>gi|317501093|ref|ZP_07959299.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897480|gb|EFV19545.1| SNF2 domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 450

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 110/199 (55%), Gaps = 7/199 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   ++EL   L    + A N+AS T K  QLANGA+ Y +     E HD K+ ALE II
Sbjct: 256 YEDLKQELILQLPDGEVTAANAASLTGKLSQLANGAI-YADTGEVIEFHDRKLDALEDII 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  DL+R++  F            I +WN GKIP+   HPAS GHGL
Sbjct: 315 EAANEKPLLVAYWFRHDLSRIKNRFNVREIKTSRD--IADWNAGKIPVAVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ LV+F L W LE +QQ   R+      Q      V + ++I + TIDE +++ 
Sbjct: 373 NLQAGGSTLVWFGLTWSLELYQQTNARLWR----QGQESGTVVIQHIITKGTIDERIVKA 428

Query: 184 LRTKSTIQDLLLNALKKET 202
           L  K   Q  L++A+K + 
Sbjct: 429 LSKKEMTQTALIDAVKADL 447


>gi|218133421|ref|ZP_03462225.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990796|gb|EEC56802.1| hypothetical protein BACPEC_01286 [Bacteroides pectinophilus ATCC
           43243]
          Length = 457

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 82/201 (40%), Positives = 123/201 (61%), Gaps = 9/201 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAV YDE  + + +HD K+ ALE 
Sbjct: 251 LYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAV-YDESGNVRNIHDRKLDALED 309

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+ K FP      K    I++WNEGKIP+   HPAS GH
Sbjct: 310 LIESANGKPLLVAYWFKHDRERILKRFPARDINTK--KDIEDWNEGKIPVALIHPASAGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +L
Sbjct: 368 GLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDIL 422

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + +  K T Q+ ++ A+K   
Sbjct: 423 RAIEKKDTTQNAMIEAVKARI 443


>gi|211731857|gb|ACJ10155.1| DEAD box helicase [Bacteriophage APSE-3]
          Length = 440

 Score =  146 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 105/178 (58%), Positives = 144/178 (80%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I+
Sbjct: 263 YHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESIV 322

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHGL
Sbjct: 323 NESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHGL 382

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 383 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|330506407|ref|YP_004382835.1| SNF2 family helicase [Methanosaeta concilii GP-6]
 gi|328927215|gb|AEB67017.1| SNF2 family helicase [Methanosaeta concilii GP-6]
          Length = 1035

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 21/213 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   K  Q+ N    + ++    E    K+  LE
Sbjct: 795  LYAAVVEDMLSRIESSEGMKRRGQILAALTKLKQICNHPALFLQDGSPLEGRSGKLSRLE 854

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEG 107
             ++++  +     ++   F    A L+                  +  +    IQ + +G
Sbjct: 855  EMLDEAISVGDRALIFTQFAGMGAMLRHQLQEKLGVEVLFLHGKTSRKQREEMIQRFQQG 914

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    N +  F  WW+       +E     R  + G K+ VFV
Sbjct: 915  SSPIFILSLKAGGFGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAFRIGQKKNVFV 968

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +  +   T++E + Q +  K  + + ++   + 
Sbjct: 969  HKFVCAGTLEERIDQMIEQKKALAESVIGTGEA 1001


>gi|331007741|ref|ZP_08330867.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
 gi|330418449|gb|EGG92989.1| hypothetical protein IMCC1989_1942 [gamma proteobacterium IMCC1989]
          Length = 479

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/188 (45%), Positives = 125/188 (66%), Gaps = 5/188 (2%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E IE  N+A+ + K LQ +NGA+Y +++ HW+ VHD K+ ALE II++A   P++VAY+
Sbjct: 276 QETIEVLNAAALSNKLLQFSNGAIYTNDQGHWEAVHDLKLSALEEIIQEAAGQPVLVAYN 335

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + SDLAR+++ FPQ   +     +I  WN GKI LL AHPAS GHGLNLQ+GGN +V+F 
Sbjct: 336 YKSDLARIKEHFPQAECITDSEDSIDRWNAGKISLLLAHPASAGHGLNLQHGGNTIVWFG 395

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L W LE +QQ   R+      + G  + V +++L+   +IDE V++ L++K T Q  LLN
Sbjct: 396 LNWSLELYQQFNARL-----HRQGQTKPVIIHHLVVNGSIDETVIEALKSKKTTQKALLN 450

Query: 197 ALKKETIH 204
           ALKK+  +
Sbjct: 451 ALKKDITN 458


>gi|239986923|ref|ZP_04707587.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 914

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++G    A             Q+ N    Y  EE         K+  L
Sbjct: 688 LYEAAVRETMAQIEGAEGIARRGLIMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 747

Query: 60  EVIIEK--ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + S            A   +    G  + +    +  +   
Sbjct: 748 DELLDTILSEDGSVLIFTQYVSMARLLSAHLASRAIPSQLLHGGTPVPERERMVDRFQSA 807

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+       +E     R  + G  + V V
Sbjct: 808 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQPVQV 861

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +I + T+++ + + L +K  + D +L + +     +
Sbjct: 862 HRIITEGTVEDRIAELLESKRALADAVLGSGESALTEL 899


>gi|239940441|ref|ZP_04692378.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291443871|ref|ZP_06583261.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291346818|gb|EFE73722.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1006

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++G    A             Q+ N    Y  EE         K+  L
Sbjct: 780 LYEAAVRETMAQIEGAEGIARRGLIMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 839

Query: 60  EVIIEK--ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + S            A   +    G  + +    +  +   
Sbjct: 840 DELLDTILSEDGSVLIFTQYVSMARLLSAHLASRAIPSQLLHGGTPVPERERMVDRFQSA 899

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+       +E     R  + G  + V V
Sbjct: 900 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQPVQV 953

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +I + T+++ + + L +K  + D +L + +     +
Sbjct: 954 HRIITEGTVEDRIAELLESKRALADAVLGSGESALTEL 991


>gi|302876787|ref|YP_003845420.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307687468|ref|ZP_07629914.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302579644|gb|ADL53656.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 456

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 119/204 (58%), Gaps = 8/204 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++L   L G  I A N+AS + K  Q+ANGAV Y ++K + E HD+K+ ALE II
Sbjct: 258 YEEMKKDLVLSLPGGEITASNAASLSGKLSQMANGAV-YTDDKSYIEFHDKKLDALEDII 316

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPASCG 120
           E AN  P++VAY +  DL R+++         +      +I++WN G++P+   HPAS G
Sbjct: 317 EAANGQPLMVAYWYKHDLIRIEERLKSLGVQYQRLDSDASIEKWNRGELPVALVHPASAG 376

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ LV+F + W LE +QQ   R+      Q      V + +LI++ TIDE +
Sbjct: 377 HGLNLQSGGSTLVWFGITWSLELYQQTNARLYR----QGQTASCVKIIHLISKGTIDERI 432

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
           ++ L  K   Q  L++A+K +   
Sbjct: 433 VKALSDKDNTQAALIDAVKADLNQ 456


>gi|153814245|ref|ZP_01966913.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
 gi|145848641|gb|EDK25559.1| hypothetical protein RUMTOR_00454 [Ruminococcus torques ATCC 27756]
          Length = 457

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 9/201 (4%)

Query: 3   QYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y +   E+  +  +G++I+A N+A+ + K  Q+ANGAV YDE  + + +HD K+ ALE 
Sbjct: 251 LYDRMADEMILEYGEGQDIDAVNAAALSNKLQQMANGAV-YDESGNVRNIHDRKLDALED 309

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+ K FP      K    I++WNEGKIP+   HPAS GH
Sbjct: 310 LVESANGKPLLVAYWFKHDRERILKRFPARDINTK--KDIEDWNEGKIPVALIHPASAGH 367

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +V+FSL W LE +QQ+  R+      + G K  V + +L+ + T+DE +L
Sbjct: 368 GLNLQEGGSTIVWFSLTWSLELYQQLNARL-----YRQGQKHTVIIEHLVTEGTVDEDIL 422

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + +  K   Q+ ++ A+K   
Sbjct: 423 RAIEKKDNTQNAMIEAVKARI 443


>gi|257088837|ref|ZP_05583198.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256997649|gb|EEU84169.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 430

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAV YDE    +E+H EK+ ALE 
Sbjct: 227 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAV-YDENGDGREIHQEKLNALER 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 286 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 345

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +Q         R  + G  + V +++L+ + TIDE V+
Sbjct: 346 GLNLQKGGHIIVWFGLTWSLEFYQ-----QANARLDRQGQTQPVIIHHLVTKGTIDEQVI 400

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 401 KALQAKEQGQSALMAAVKAKI 421


>gi|297585287|ref|YP_003701067.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297143744|gb|ADI00502.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 460

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + ++E     +  ++ A ++A    K LQLANGA+ YDE    +EVHDEK++AL+ 
Sbjct: 254 RAYTQLEKEWLLAFEDADVLAGSAAVVANKLLQLANGAI-YDETGDVQEVHDEKLEALKE 312

Query: 62  IIEKANAAPIIVAYHFNSDLARL-QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +IE AN  P++V Y++  D  R+ +        + K    I++WN+G +P+L AHPAS G
Sbjct: 313 LIESANGKPVLVYYNYQHDRDRILKHLKAFKPRVLKTDQDIRDWNKGNVPVLLAHPASAG 372

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+++V+F L W LE +Q         R  + G    V V++LI + T+DE V
Sbjct: 373 HGLNLQAGGHVMVWFGLNWSLELYQ-----QANARLHRQGQTETVVVHHLITKGTMDERV 427

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           +  L+ K T Q+ L+ A+K +
Sbjct: 428 MAALKQKDTSQEALIAAVKAK 448


>gi|323484110|ref|ZP_08089480.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
 gi|323402552|gb|EGA94880.1| SNF2-like protein [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 8/202 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M  YH+ ++++    +  +I+A N+A  + K +Q+ANGAV YDE    K +HD K++ALE
Sbjct: 251 MNLYHQLEKDMLVPYEDGDIDAVNAAGLSNKLMQMANGAV-YDENGAVKHIHDRKLEALE 309

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E AN  P++VAY +  DLAR++     G          ++WN G+IP+   HPAS G
Sbjct: 310 DLVEAANGKPVLVAYWYKHDLARIRDRL--GVAELDAAEDFRKWNAGEIPVAVIHPASAG 367

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ L++F L W LE +QQM  R+      + G K  V +++LIA++T+DE V
Sbjct: 368 HGLNLQTGGSTLIWFGLTWSLELYQQMNARLW-----RQGQKETVVIHHLIAKDTLDERV 422

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           +  L  K   Q  L++A++   
Sbjct: 423 MTALEKKDCGQSALVDAVRARI 444


>gi|167746056|ref|ZP_02418183.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
 gi|167654571|gb|EDR98700.1| hypothetical protein ANACAC_00751 [Anaerostipes caccae DSM 14662]
          Length = 452

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 8/204 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   + EL   L    I A N+AS + K  Q+ANGAV Y +++    VH+ K+ ALE 
Sbjct: 254 KKYEDMKAELVLALPEGEITAANAASLSNKLSQMANGAV-YADDESILSVHERKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           IIE AN  P++VAY F  DL R+++   + +   +      +++ WN+G++P+   HPAS
Sbjct: 313 IIESANGKPLLVAYWFKHDLMRIEQRLNEKKIPFQKLDTDASMKRWNKGELPVALIHPAS 372

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GG+ LV+F + W LE +QQ + R+      Q    R V + +++ Q T+DE
Sbjct: 373 AGHGLNLQSGGSTLVWFGITWSLELYQQTVARLYR----QGQESRTVTIIHILTQGTVDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +++ L  K + Q  L++A+K E 
Sbjct: 429 KIMKALADKDSTQSALIDAVKAEL 452


>gi|281416462|ref|YP_003347382.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|270209638|gb|ACZ64177.1| DNA helicase [Enterococcus phage phiFL4A]
 gi|315160593|gb|EFU04610.1| protein, SNF2 family [Enterococcus faecalis TX0645]
 gi|315579439|gb|EFU91630.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 459

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAV YDE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAV-YDENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +Q         R  + G  + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQ-----QANARLDRQGQTQPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 430 KALQAKEQGQSALMAAVKAKI 450


>gi|153938777|ref|YP_001391667.1| SNF2 domain-containing protein [Clostridium botulinum F str.
           Langeland]
 gi|152934673|gb|ABS40171.1| SNF2 domain protein [Clostridium botulinum F str. Langeland]
 gi|295319699|gb|ADG00077.1| SNF2 domain protein [Clostridium botulinum F str. 230613]
          Length = 454

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 127/204 (62%), Gaps = 9/204 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M +Y + +++L  +L  ++I A N+A  T K LQ++NGA+ Y E+K   E+H+EK+KAL 
Sbjct: 252 MDKYKQLEKDLVIELGEDDITATNAAVLTNKLLQMSNGAI-YSEDKSVLEIHEEKLKALL 310

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPA 117
            IIE AN  P+++ Y F  D  R+       +      +D   I++WN G+IP+L  HPA
Sbjct: 311 DIIEAANGKPVLIFYSFKHDFDRIVNFLKTKKLNAIGLEDSKDIKKWNNGEIPILLVHPA 370

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQYGGNI+V+F L W LE +Q         R  + G K +V +++L++++T+D
Sbjct: 371 SAGHGLNLQYGGNIIVWFGLTWSLELYQ-----QANARLHRQGQKESVIIHHLVSKDTVD 425

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E V++ L +K   Q++LL A+K  
Sbjct: 426 EDVIKALDSKEVNQNVLLEAVKAR 449


>gi|211731841|gb|ACJ10144.1| DEAD box helicase [Bacteriophage APSE-5]
          Length = 440

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 103/178 (57%), Positives = 140/178 (78%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 263 YQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESIV 322

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHGL
Sbjct: 323 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHGL 382

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V+
Sbjct: 383 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVVM 440


>gi|300784409|ref|YP_003764700.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299793923|gb|ADJ44298.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 933

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   +++                +  Q+ N    +  E          K+ A 
Sbjct: 708 LYEAVVRENLAEIRETQGIKRRGQVLQLLNELKQICNHPAQFLKEPHGALTGRSGKLAAF 767

Query: 60  EVIIEK--ANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           E +++        ++V   +            D     +     R+  K    +  +  G
Sbjct: 768 EELLDVILDEGESVLVFSQYVQLCRLLERRLKDRGLPTELLSGERSPAKRQDMVDRFQAG 827

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +IP+      + G GLNL      ++ +  WW+       +E     R  + G  R V V
Sbjct: 828 EIPVFLLSLKAGGVGLNLTR-ATHVIHYDRWWNPA-----VEDQATDRAYRIGQDRPVQV 881

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + LIA+ T++E + Q L  K  + + ++ A +
Sbjct: 882 HRLIAEGTLEERIAQVLEKKRGLAESIVGAGE 913


>gi|226949727|ref|YP_002804818.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843727|gb|ACO86393.1| SNF2 domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 456

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 9/201 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++L  +L  ++I A N+A  T K LQ++NGA+ Y E+K   E+HDEK+KAL  II
Sbjct: 255 YKQLEKDLVLELGEDDITAANAAVLTNKLLQMSNGAI-YSEDKQVIEIHDEKLKALLDII 313

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---KDPCTIQEWNEGKIPLLFAHPASCG 120
           E AN  P+++ Y F  D  R+   F   +       D   I++WN G+IP+L  HPAS G
Sbjct: 314 ESANGKPVLIFYSFKHDFDRIVNFFKSKKLNAIGLGDSKDIKKWNNGEIPILLVHPASAG 373

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQYGGNI+V+F L W LE +Q         R  + G K +V +++L++++T+DE V
Sbjct: 374 HGLNLQYGGNIIVWFGLTWSLELYQ-----QANARLHRQGQKESVIIHHLVSKDTVDEDV 428

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++ L +K   Q++LL A+K  
Sbjct: 429 IKTLGSKEVNQNVLLEAVKAR 449


>gi|284048430|ref|YP_003398769.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
 gi|283952651|gb|ADB47454.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
          Length = 449

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y  F++ L  +L G  + A N+AS T+K  Q+ANGA+ Y ++     +HD K+ ALE 
Sbjct: 252 KRYQDFKKSLVMELPGGEVTAANAASLTLKLTQMANGAI-YTDDGKTIHLHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+           K      +WN GKIP+   HPAS GH
Sbjct: 311 LVESANGRPVLVAYWFRHDKERI--CQRMEARELKSSQDFADWNAGKIPVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL++F L W LE +QQ + R+      Q    R V V +++ ++TIDE +L
Sbjct: 369 GLNLQQGGSILIWFGLTWSLELYQQTVARLWR----QGQESRTVIVQHIVTKSTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K + Q  L+ A+K + 
Sbjct: 425 KALEKKDSSQAALIEAVKADL 445


>gi|304436366|ref|ZP_07396342.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370635|gb|EFM24284.1| SNF2 domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 447

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y     +L   ++G+ + A N+   + K  Q+ANG V Y ++     +HD K+ ALE 
Sbjct: 252 KMYDSMCEQLVLQMKGDEVTAANAGVLSGKLAQMANGTV-YTDDGSTLHIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE  N  P++V Y F  D  R++K  P           I  WN G+I +   HPAS GH
Sbjct: 311 IIESMNGKPLLVPYWFRHDAERIEKRLPC--VRLDTDDAIARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+      Q      V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARLYR----QGQNSNTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K E 
Sbjct: 425 RALKRKDKTQTALIEAVKAEV 445


>gi|318059790|ref|ZP_07978513.1| SNF2-like protein [Streptomyces sp. SA3_actG]
 gi|318075191|ref|ZP_07982523.1| SNF2-like protein [Streptomyces sp. SA3_actF]
          Length = 951

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 83/214 (38%), Gaps = 21/214 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKA 58
           + Y +  R    +++     A +           Q+ N    + +E   +      K+  
Sbjct: 724 RLYEEQVRATMAEIRSAKGIARSGLVLRLLTGLKQICNHPAQFLKEGEPELSGRSGKLAL 783

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
           L+ +++        ++V   + +    L++              G  + +    ++ + +
Sbjct: 784 LDELLDTILAADGAVLVFTQYVAMARLLERHLRERGIAAQLLHGGTPVPRREEMVRRFQD 843

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+       +E     R  + G  R V 
Sbjct: 844 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEAQATDRAHRIGQTRPVQ 897

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ TI++ +   + +K  + D +L   ++
Sbjct: 898 VHRLIAEGTIEDRIAALMESKRELADAVLGGGER 931


>gi|302523347|ref|ZP_07275689.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
 gi|302432242|gb|EFL04058.1| SNF2/RAD54 family helicase [Streptomyces sp. SPB78]
          Length = 968

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 83/214 (38%), Gaps = 21/214 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK-EVHDEKIKA 58
           + Y +  R    +++     A +           Q+ N    + +E   +      K+  
Sbjct: 741 RLYEEQVRATMAEIRSAKGIARSGLVLRLLTGLKQICNHPAQFLKEGEPELSGRSGKLAL 800

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
           L+ +++        ++V   + +    L++              G  + +    ++ + +
Sbjct: 801 LDELLDTILAADGAVLVFTQYVAMARLLERHLRERGIAAQLLHGGTPVPRREEMVRRFQD 860

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + +V +  WW+       +E     R  + G  R V 
Sbjct: 861 GEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEAQATDRAHRIGQTRPVQ 914

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ LIA+ TI++ +   + +K  + D +L   ++
Sbjct: 915 VHRLIAEGTIEDRIAALMESKRELADAVLGGGER 948


>gi|159146252|gb|ABW90589.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146254|gb|ABW90590.1| DEAD box helicase [Bacteriophage APSE-2]
 gi|159146256|gb|ABW90591.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 105/177 (59%), Positives = 143/177 (80%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ALE I+
Sbjct: 119 YHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQALESIV 178

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+ +WN GKIPLLFAHPASCGHGL
Sbjct: 179 NESGGTPVLVAYHWKHDLERLLKAFPKGKNLDANPRTLTDWNNGKIPLLFAHPASCGHGL 238

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 239 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|150391738|ref|YP_001321787.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
 gi|149951600|gb|ABR50128.1| phage-associated helicase [Alkaliphilus metalliredigens QYMF]
          Length = 414

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 8/200 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F+ ++   L  E I+A N+A  + K LQ+ANGAV YDE+     +HD K+ ALE +
Sbjct: 219 IYSGFRDDMVASLGAEEIDAVNAAVLSGKLLQMANGAV-YDEKNKAHFIHDRKLDALEDL 277

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY F  DL R+QK FP  +        I+EWNEG+IP+   HPAS GHG
Sbjct: 278 IEGANGKPVLIAYWFKHDLDRIQKRFPARQLKSSRD--IEEWNEGEIPVAVIHPASAGHG 335

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ LV+F L W LE +QQ   R+      + G K  V ++++I ++TIDE V+ 
Sbjct: 336 LNLQSGGSTLVWFGLTWSLELYQQTNARL-----YRQGQKDTVVIHHIITKDTIDEDVMT 390

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K   Q  L++A+K + 
Sbjct: 391 ALTKKEKTQASLIDAVKAKL 410


>gi|32475836|ref|NP_868830.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
 gi|32446379|emb|CAD76207.1| probable swi/snf family helicase 2 [Rhodopirellula baltica SH 1]
          Length = 1386

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 20/210 (9%)

Query: 3    QYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y   +R+   +L+  + +        ++ ++  +        D +   K    E+    
Sbjct: 1169 MYEAMRRKALQNLEDSDDDRPVHIKILAELMRLRRFCCHPDLVDPDAGLKAAKLERFTDT 1228

Query: 60   EVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + +     ++V   F   L              +         K   ++  + +G+ 
Sbjct: 1229 VTDLIE-GGHKVLVFSQFVGHLHLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQDGEG 1287

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++    WW+       +E     R  + G +R V VY 
Sbjct: 1288 DVFLISLKAGGVGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRMGQQRPVTVYR 1341

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             I   TI+E +LQ   +K  + D LL   +
Sbjct: 1342 FITTGTIEERILQLHESKRDLADSLLEGTE 1371


>gi|290962297|ref|YP_003493479.1| hypothetical protein SCAB_79891 [Streptomyces scabiei 87.22]
 gi|260651823|emb|CBG74949.1| putative helicase (fragment) [Streptomyces scabiei 87.22]
          Length = 953

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++                    Q+ N    Y  EE+        K + L
Sbjct: 726 LYEALVRETMAEIARADGMERRGLIMKLLTGLKQICNHPAQYLKEERPRVPGRSGKTELL 785

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G  + +    ++ +  G
Sbjct: 786 DELLDTILSEGAGVLVFTQYVRMARLLERHLAARGVPTLFLHGGTPVTERESMVERFQAG 845

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 846 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 899

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + LIA+ TI++ +   L +K  + D +L  
Sbjct: 900 HRLIAEGTIEDRIADMLLSKRKLADAVLGG 929


>gi|159146260|gb|ABW90593.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 104/179 (58%), Positives = 141/179 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+ ++W E+HD KI+ LE 
Sbjct: 117 EHYQAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNRNWTEIHDAKIQVLES 176

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I+ +A   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGH
Sbjct: 177 IVNEAGGMPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGH 236

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           GLNLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 237 GLNLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|227520161|ref|ZP_03950210.1| helicase [Enterococcus faecalis TX0104]
 gi|227072406|gb|EEI10369.1| helicase [Enterococcus faecalis TX0104]
 gi|315574062|gb|EFU86253.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315582007|gb|EFU94198.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 455

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+  ++ A N+A+ + K LQL+NGAV YDE    +E+H EK+ ALE 
Sbjct: 256 KQYKELEREYVLELEETDVVASNAATLSNKLLQLSNGAV-YDENGDGREIHQEKLNALER 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKIPLL AHP S GH
Sbjct: 315 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKIPLLLAHPQSAGH 374

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +Q         R  + G  + V +++L+ + TIDE V+
Sbjct: 375 GLNLQKGGHIIVWFGLTWSLEFYQ-----QANARLDRQGQTQPVIIHHLVTKGTIDEQVI 429

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 430 KALQAKEQGQSALMAAVKAKI 450


>gi|29374969|ref|NP_814122.1| SNF2 domain-containing protein [Enterococcus faecalis V583]
 gi|29342427|gb|AAO80193.1| SNF2 domain protein [Enterococcus faecalis V583]
          Length = 457

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY + +RE   +L+G ++ A N+A+ + K LQL+NGAV YDE    +E+H EK+ ALE 
Sbjct: 254 KQYKELEREYVLELEGTDVVASNAATLSNKLLQLSNGAV-YDENGDGREIHQEKLNALER 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE A    ++V Y +  DL R+Q  F Q + L+     I++WNEGKI LL AHP S GH
Sbjct: 313 VIEDAQGQSVLVFYQYQHDLERIQARFKQAKALNVSDGDIEKWNEGKISLLLAHPQSAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +Q         R  + G  + V +++L+ + TIDE V+
Sbjct: 373 GLNLQKGGHIIVWFGLTWSLEFYQ-----QANARLDRQGQTQPVIIHHLVTKGTIDEQVI 427

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L+ K   Q  L+ A+K + 
Sbjct: 428 KALQAKEQGQSALMAAVKAKI 448


>gi|217965845|ref|YP_002351523.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|217335115|gb|ACK40909.1| SNF2 domain protein [Listeria monocytogenes HCC23]
 gi|307569607|emb|CAR82786.1| SNF2/RAD54 helicase family protein [Listeria monocytogenes L99]
          Length = 463

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 7/204 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + ++E   + +  ++ A ++A  + K LQLANGA+ YDE + ++E+H++K++AL  I
Sbjct: 259 QYSELEKEFLLEFEHSDVVADSAAVLSNKLLQLANGAI-YDENQEYQEIHNKKLEALADI 317

Query: 63  IEKANAAPIIVAYHFNSDLARLQKA-FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IE++   P++V Y +  D  R+            KD  +I++WN GK  +L AHPAS GH
Sbjct: 318 IEESVGQPVLVFYSYKHDEKRILNHLKQYKPEKIKDSRSIRKWNAGKTRVLLAHPASAGH 377

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+I+V+F L W LE +Q         R  + G K++V V++++A++T+DE V+
Sbjct: 378 GLNLQDGGHIVVWFGLTWSLELYQ-----QANARLFRQGQKKSVIVHHIVAKDTLDEKVI 432

Query: 182 QRLRTKSTIQDLLLNALKKETIHV 205
           + L +K   QD LL A+K     V
Sbjct: 433 EALSSKKVGQDALLEAVKARLEKV 456


>gi|197303505|ref|ZP_03168544.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
 gi|197297503|gb|EDY32064.1| hypothetical protein RUMLAC_02227 [Ruminococcus lactaris ATCC
           29176]
          Length = 333

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 120/205 (58%), Gaps = 8/205 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + E++  L+   I A N+A+ + K LQ+ANGAV Y ++    ++HD+K+ ALE +
Sbjct: 132 LYDDMEAEMFLPLRTGEITAANAAALSGKLLQMANGAV-YSDDGDEIQIHDQKLDALEDL 190

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  DL R+++   + +   +      +I++WN G++P+   HPAS 
Sbjct: 191 IEAANGKPVMVAYWFKHDLTRIRRRLSERKISFEKLDSEESIRKWNRGELPVALIHPASA 250

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGNIL++F L W LE +QQ + R+      Q      V V ++I   TIDE 
Sbjct: 251 GHGLNLQSGGNILIWFGLTWSLELYQQTVARLWR----QGQSAETVVVQHIITAGTIDED 306

Query: 180 VLQRLRTKSTIQDLLLNALKKETIH 204
           V++ L  K   Q+ L+ A+K    H
Sbjct: 307 VMKALANKDMTQNRLIAAVKARVTH 331


>gi|294628099|ref|ZP_06706659.1| SNF2/helicase domain-containing protein [Streptomyces sp. e14]
 gi|292831432|gb|EFF89781.1| SNF2/helicase domain-containing protein [Streptomyces sp. e14]
          Length = 906

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G    A             Q+ N    +  E++        K++ L
Sbjct: 679 LYEALVRETLAEISGAGGMARRGLVVKLLTGLKQICNHPAQFLKEDRPRIAGRSGKLELL 738

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + ++       A ++V   +      +++              G  +      ++ + +G
Sbjct: 739 DELLGTILAEGAGVLVFTQYVRMARLIERHLAARGVPSQFLHGGTPVAGREDMVRRFQDG 798

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 799 EAPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQSRPVQV 852

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ T+++ +   LR K  + + +L   +     +
Sbjct: 853 HRLIAEGTVEDRIAGLLRRKQDLAETVLGTGEAALTEL 890


>gi|320006862|gb|ADW01712.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 992

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    Y  EE+        K++ L
Sbjct: 765 LYEAVVRETLDEISGADGFARRGLIVKLMTALKQICNHPAQYLKEEQPRIADRSGKVELL 824

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G  + +    +  +  G
Sbjct: 825 DELLDTILSEGAGVLVFTQYVQMARLLERHLAARGVPTQFLHGGTPIAEREAMVDRFQAG 884

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V    WW+       +E     R  + G  R V V
Sbjct: 885 RVPVFLLSLKAAGTGLNLTR-AEHVVHVDRWWNPA-----VEAQATDRAYRIGQTRPVQV 938

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LI + TI++ +   L  K  + D +L   +     +
Sbjct: 939 HRLITEGTIEDRIAAMLARKQGLADAVLGGGEAALTEL 976


>gi|255306562|ref|ZP_05350733.1| SNF2-related protein [Clostridium difficile ATCC 43255]
          Length = 456

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 7/202 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y ++ K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDKDIITASSAAVAANKLLQLANGAIYDND-KNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            II+ +N  PII+ Y++  D  R +++         ++   I +WN G+I LL  HPAS 
Sbjct: 314 EIIDVSNGKPIIIFYNYKHDYNRLMKEFKSLKPRTIENSKDIYDWNNGRIQLLLCHPAST 373

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+I+V+F L W LE +Q         R  + G +  V +++LI + TIDE 
Sbjct: 374 GHGLNLQSGGSIIVWFGLTWSLELYQ-----QANARLYRQGQRETVIIHHLICKGTIDEQ 428

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V++ L  K   Q  LL A+K +
Sbjct: 429 VMEALENKDKGQSALLEAVKAK 450


>gi|320011393|gb|ADW06243.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 964

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 80/218 (36%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    Y  EE         K+  L
Sbjct: 738 LYEAAVRETMAFIEQSEGIARRGLIMKLLGSLKQICNHPAQYLKEEPTRLTGRSGKLALL 797

Query: 60  EVIIEK--ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + S            +   +    G  + +    +  +  G
Sbjct: 798 DELLDTILSEDGSVLIFTQYVSMARLLSAHLASRSIPSQLLHGGTPVPERERMVDGFQSG 857

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + ++ +  WW+       +E     R  + G  + V V
Sbjct: 858 EVPVFLLSLKAAGTGLNLTRAAH-VIHYDRWWNPA-----VEEQATDRAYRIGQTQPVQV 911

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ T+++ + + L++K  + D +L + +     +
Sbjct: 912 HRLIAEGTVEDRISELLQSKRALADAVLGSGEAALTEL 949


>gi|85860994|ref|YP_463196.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
 gi|85724085|gb|ABC79028.1| swf/snf family helicase [Syntrophus aciditrophicus SB]
          Length = 1407

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 25/211 (11%)

Query: 3    QYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y   +R+    L+  +     +     ++ ++  Q          +    E+   K+  
Sbjct: 1187 LYEAMRRQAVETLEQNDSPVGQKHLKILAEIMRLRQACCHPRLVVPD---SELTSSKLAL 1243

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNE 106
               ++E+   N+   +V   F S LA             +    G    +    ++ +  
Sbjct: 1244 FGEVVEEMLENSHKALVFSQFVSHLALIQDYLKQKGIEYRYLDGGTPPKERRREVEAFQA 1303

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            GK  L      + G GLNL    + ++    WW+       +E     R  + G KR V 
Sbjct: 1304 GKGSLFLISLRAGGVGLNLTA-ADFVIHMDPWWNPA-----VEDQASDRAHRIGQKRPVT 1357

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+ +NTI+E +L+   +K  + D LL+ 
Sbjct: 1358 VYRLVTKNTIEEKILKLHASKRDLADSLLDG 1388


>gi|227498325|ref|ZP_03928475.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903787|gb|EEH89705.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 457

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + ++ L  +L G  + A N+AS T+K  Q+ANGA+ Y ++K    +HD K+ ALE ++
Sbjct: 254 YDELKKYLVLELPGGEVTAANAASLTLKLSQMANGAI-YTDDKDVVTIHDRKLDALEDLV 312

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN  P++VAY F  D  R++          K+     +WNEGKIP+   HPAS GHGL
Sbjct: 313 ESANGKPVLVAYWFKHDKDRIR--KRMEARELKESQDFADWNEGKIPVALIHPASAGHGL 370

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ILV+F L W +E +QQ   R+      Q    + V + +++A++TIDE +L+ 
Sbjct: 371 NLQQGGSILVWFGLTWSMELYQQTNARLWR----QGQTDKTVIIQHIVAKSTIDERILKV 426

Query: 184 LRTKSTIQDLLLNALKKE 201
           L  K   Q  L+ A+K +
Sbjct: 427 LEHKDGTQSALIEAVKAD 444


>gi|295835221|ref|ZP_06822154.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825374|gb|EDY45121.2| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 923

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 84/215 (39%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
            Y +  R    +++  +  A +           Q+ N   ++    E +  +     K+ 
Sbjct: 695 LYEEQVRGTLAEIRSASGIARSGLVLRLLTGLKQICNHPAHFLKEPEPEPGRPGRSGKLA 754

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
            L+ ++         ++V   + +    L++              G  + +    ++ + 
Sbjct: 755 LLDELLGTILAADGAVLVFTQYVAMARLLERHLRERGVAAQLLHGGTPVPRREEMVRRFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL    + +V +  WW+       +E     R  + G  R V
Sbjct: 815 DGEVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEAQATDRAHRIGQTRPV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+ LIA+ TI++ +   + +K  + D +L + ++
Sbjct: 869 QVHRLIAEGTIEDRIAALMESKRELADAVLGSGER 903


>gi|317132765|ref|YP_004092079.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315470744|gb|ADU27348.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 450

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 112/199 (56%), Gaps = 7/199 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y + + +L  +L G+ I A N+A+ T K  QLANGA+ Y ++    E HD K+ ALE 
Sbjct: 256 KRYEELKNDLVLELHGDEITAANAATLTGKLSQLANGAI-YSDDGKIIEFHDRKLDALED 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           IIE AN  P++VAY F  DL R++          K    I +WN G IP+   HPAS GH
Sbjct: 315 IIEAANGKPLLVAYWFRHDLERIR--RRFDVREIKSSQDIDDWNAGNIPVAVIHPASAGH 372

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE +QQ   R+      Q    R V + +++  +TID  +L
Sbjct: 373 GLNLQSGGSTLVWFGLTWSLELYQQTNARLWR----QGQKSRTVVIQHIVTASTIDGQIL 428

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L+ K   Q  L+ A+K 
Sbjct: 429 NALKHKDKTQSALIAAVKA 447


>gi|220930418|ref|YP_002507327.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220000746|gb|ACL77347.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 457

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 125/205 (60%), Gaps = 9/205 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K +R+L   L   +I A  +A  + K LQ ANGAV Y+E +  +++H+ K+ ALE I+
Sbjct: 256 YRKLERDLLLPLVDGDIVANTAAVLSNKLLQFANGAV-YNENQEIQKIHNAKLDALEDIL 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLFAHPASCG 120
           E AN  P+++ Y +  DL+R+Q+ F Q RTL K P     I +WN GKI LL  HP S G
Sbjct: 315 EAANGHPVLLFYSYKHDLSRIQERFTQTRTLRKGPEGSKDIADWNSGKIQLLAVHPGSAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G K++V +++L+A  TIDE V
Sbjct: 375 HGLNLQDGGSIIVWFGLTWSLELYQ-----QANARLHRQGQKQSVIIHHLVADGTIDEDV 429

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
           ++ L  K+T QD L+ A+K     V
Sbjct: 430 MRALEDKATGQDALMEAVKARIERV 454


>gi|328881666|emb|CCA54905.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 948

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 27/224 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWKE-------VHD 53
            Y    RE    ++     A             Q+ N    Y +E   +           
Sbjct: 716 LYEAVVRETMAQIEEAEGMARRGLVMKLLTSLKQICNHPAQYLKEAAPRGSGTARLAGRS 775

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTI 101
            K+  L+ +++        ++V   + S                +    G  + +    +
Sbjct: 776 GKLALLDELLDTILAEDGSVLVFTQYVSMARLLADHLAARGIQAQLLHGGTPVAERERMV 835

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G++P+      + G GLNL   G+ +V +  WW+       +E     R  + G 
Sbjct: 836 DRFQAGEVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEEQATDRAYRIGQ 889

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V V+ L+A+ T+++ + + LR K  + D +L + +     +
Sbjct: 890 TQPVQVHRLVAEGTVEDRIAEMLRAKRALADAVLGSGEAALTEL 933


>gi|313896513|ref|ZP_07830064.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974937|gb|EFR40401.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 447

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 7/202 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   +L   ++G+ + A N+   + K  Q+ANGAV Y ++     +HD K+ ALE 
Sbjct: 252 KIYTEMCDQLVLQMKGDEVTAANAGVLSGKLAQMANGAV-YTDDGTTLHIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +E  N  P++VAY F  D  R++K              I  WN G+I +   HPAS GH
Sbjct: 311 FVESMNGKPLLVAYWFRHDAERIEKRVTC--VRLDTDDAIARWNRGEISVALIHPASAGH 368

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F + W LE +QQ + R+      Q    + V V ++IA+ TIDE +L
Sbjct: 369 GLNLQSGGSTLVWFGITWSLELYQQTVARLYR----QGQTAKTVVVQHIIAEGTIDERIL 424

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           + L+ K   Q  L+ A+K E  
Sbjct: 425 RALKRKDKTQAALIEAVKAEVT 446


>gi|302548243|ref|ZP_07300585.1| SNF2/helicase domain protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465861|gb|EFL28954.1| SNF2/helicase domain protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 554

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G +  A             Q+ N    +  E++        K++ L
Sbjct: 327 LYEAVVREILAEIAGADGLARRGLIVKLLTGLKQICNHPAQFLKEDRPVVPGRSGKLELL 386

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      L+               G  + +    ++ + +G
Sbjct: 387 DELLDTILAEGASVLVFTQYVQMARILEAHLTARGVPLQLLHGGTPVARREEMVRRFQDG 446

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL   G+ +V +  WW+       +E     R  + G  + V V
Sbjct: 447 EAPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEAQATDRAYRIGQTQPVQV 500

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LI + T+++ +   L  K  + D +L + +     +
Sbjct: 501 HRLITEGTVEDRIAAMLERKRELADAVLGSGEAALTEL 538


>gi|159146262|gb|ABW90594.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/177 (58%), Positives = 139/177 (78%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 119 YQAMEKELFLELGDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESIV 178

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHGL
Sbjct: 179 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHGL 238

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 239 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|282865750|ref|ZP_06274800.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282559394|gb|EFB64946.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 957

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    Y  EE+        K++ L
Sbjct: 730 LYEAVVRETMAEISGADGFARRGLVVKLLTALKQICNHPAQYLKEEEPRIADRSGKVELL 789

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      L++              G  + +    +  +  G
Sbjct: 790 DELLDTILAEGASVLVFTQYVRMGRLLEQHLAVRGVRTQFLHGGTPVAEREAMVNRFQAG 849

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL   G+ +V F  WW+       +E     R  + G  + V V
Sbjct: 850 DAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEAQATDRAYRIGQTQPVQV 903

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L   +     +
Sbjct: 904 HRLIAEGTIEDRIAGMLARKQGLADAVLGGGESALTEL 941


>gi|302549833|ref|ZP_07302175.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302467451|gb|EFL30544.1| SNF2/RAD54 family helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 948

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 25/220 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G    A             Q+ N    Y  EE+        K++ L
Sbjct: 721 LYEAVVREALAEISGAGSMARRGLIVKLLTGLKQICNHPAQYLKEERPVIAGRSGKLELL 780

Query: 60  E----VIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
           +     I+ +     ++V   +      L++              G  + +    ++ + 
Sbjct: 781 DELLDTILAERAG--VLVFTQYVRMARLLERHLAGRGTPSQFLHGGTPVAEREAMVRRFQ 838

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL      +V +  WW+       +E     R  + G  R V
Sbjct: 839 DGEVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPV 892

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+ ++A+ TI++ + + L  K  + D +L + +     +
Sbjct: 893 QVHRIVAEGTIEDRIAELLTRKRALADAVLGSGEAALTEL 932


>gi|325684273|gb|EGD26446.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 633

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+ DEKI+    
Sbjct: 434 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFDEKIECC-F 492

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL   + +     +     P  I+ WN+GKIP++   PA
Sbjct: 493 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 552

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 553 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 607

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 608 RHVLDSLKKKDLSQQALLAAVRR 630


>gi|297155115|gb|ADI04827.1| SNF2/RAD54 family helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1008

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G +  A             Q+ N    Y  E++        K++ L
Sbjct: 781 LYEAVVREMLAEISGADGLARRGLIVKLLTGLKQICNHPAQYLKEDRPVIAGRSGKLELL 840

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      LQ               G  + +    +  + EG
Sbjct: 841 DELLDTILAEDASVLVFTQYVQMARILQDHLAARGIGAQLLHGGTPVARRQELVDRFQEG 900

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL   G+ +V +  WW+       +E     R  + G  + V V
Sbjct: 901 EVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEAQATDRAYRIGQTQPVQV 954

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ T+++ +   L  K  + D +L A +     +
Sbjct: 955 HRLIAEGTVEDRIAAILERKRELADAVLGAGEAALTEL 992


>gi|326779993|ref|ZP_08239258.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660326|gb|EGE45172.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1001

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    Y  EE         K+  L
Sbjct: 775 LYEAAVRETMAQIEAAEGIARRGLVMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 834

Query: 60  EVIIEK--ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + +            A   +    G  + +    +  +   
Sbjct: 835 DELLDTILSEDGSVLIFTQYVTMAKLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQSA 894

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+       +E     R  + G  + V V
Sbjct: 895 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQPVQV 948

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ + + L +K  + D +L + +     +
Sbjct: 949 HRIIAEGTVEDRIAELLESKRVLADAVLGSGESALTEL 986


>gi|182439336|ref|YP_001827055.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467852|dbj|BAG22372.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1004

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    Y  EE         K+  L
Sbjct: 778 LYEAAVRETMAQIEAAEGIARRGLVMKLLTSLKQICNHPAQYLKEEPTRLTGRSGKLALL 837

Query: 60  EVIIEK--ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++   +    +++   + +            A   +    G  + +    +  +   
Sbjct: 838 DELLDTILSEDGSVLIFTQYVTMAKLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQSA 897

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V F  WW+       +E     R  + G  + V V
Sbjct: 898 EVPVFLLSLKAAGTGLNLTRAAH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQPVQV 951

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ + + L +K  + D +L + +     +
Sbjct: 952 HRIIAEGTVEDRIAELLESKRVLADAVLGSGESALTEL 989


>gi|291441044|ref|ZP_06580434.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291343939|gb|EFE70895.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 619

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  EE+        K++ L
Sbjct: 392 LYEAVVREALAEISGADGAARRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLELL 451

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +                 ++    G  + +    ++ + +G
Sbjct: 452 DELLDTVLAERAGVLVFTQYVQMARLLQRHLAARGVPEQFLHGGTPVAEREAMVRRFQDG 511

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 512 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 565

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ + + L  K  + D +L + +     +
Sbjct: 566 HRIIAEGTVEDRIAELLVRKRELADAVLGSGEAALTEL 603


>gi|326774662|ref|ZP_08233927.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326654995|gb|EGE39841.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1039

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    RE   ++                    Q+ N    Y  EE+        K++ L
Sbjct: 812  LYEAVVRETLAEISAADGFERRGLVMKLLTALKQICNHPAQYLKEEQPRIADRSGKVELL 871

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
            + +++        ++V   +      L++              G  + +    +  +  G
Sbjct: 872  DELLDTILAERGSVLVFTQYVQMARLLEEHLAARGVATQFLHGGTPVARREEMVNRFQSG 931

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GLNL   G+ +V F  WW+       +E     R  + G  + V V
Sbjct: 932  EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEAQATDRAYRIGQTQPVQV 985

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + LIA+ TI++ + + L  K  + D +L + +     +
Sbjct: 986  HRLIAEGTIEDRIAEMLTRKQGLADAVLGSGEAALTEL 1023


>gi|239932688|ref|ZP_04689641.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 624

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  EE+        K++ L
Sbjct: 397 LYEAVVREALAEISGADGAARRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLELL 456

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +                 ++    G  + +    ++ + +G
Sbjct: 457 DELLDTVLAERAGVLVFTQYVQMARLLQRHLAARGVPEQFLHGGTPVAEREAMVRRFQDG 516

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 517 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 570

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ + + L  K  + D +L + +     +
Sbjct: 571 HRIIAEGTVEDRIAELLVRKRELADAVLGSGEAALTEL 608


>gi|182434140|ref|YP_001821859.1| SNF2/RAD54 family helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462656|dbj|BAG17176.1| putative SNF2/RAD54 family helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1006

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++                    Q+ N    Y  EE         K++ L
Sbjct: 779 LYEAVVRETLAEISAADGFERRGLVMKLLTALKQICNHPAQYLKEEDPRIADRSGKVELL 838

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   +      L++              G  + +    +  +  G
Sbjct: 839 DELLDTILAEQGSVLVFTQYVQMARLLEEHLAARGVATQFLHGGTPVARREEMVNRFQSG 898

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL   G+ +V F  WW+       +E     R  + G  + V V
Sbjct: 899 EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEAQATDRAYRIGQTQPVQV 952

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ + + L  K  + D +L + +     +
Sbjct: 953 HRLIAEGTIEDRIAEMLTRKQGLADAVLGSGEAALTEL 990


>gi|300786586|ref|YP_003766877.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
 gi|299796100|gb|ADJ46475.1| SNF2/RAD54 family helicase [Amycolatopsis mediterranei U32]
          Length = 838

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 22/221 (9%)

Query: 1   MKQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKI 56
           +  Y    RE+  ++                    Q+ N    Y + +   E      K+
Sbjct: 609 VALYEAVVREMMAEIAASDGMARRGRIVKLLTALKQICNHPAQYLKARSLDEGGGRSGKV 668

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + L+ +++        ++V   + +    L+K              G  + +    +  +
Sbjct: 669 ELLDELLDTILAEDGAVLVFTQYVAMARLLEKHLAGRGIATQLLHGGTPVPRREELVARF 728

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G +P+      + G GLNL    + +V F  WW+       +E     R  + G  R 
Sbjct: 729 QAGAVPVFLLSLKAAGTGLNLTR-ADHVVHFDRWWNPA-----VEDQATDRAYRIGQTRP 782

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V+ L+A+ T+++ +   LR K  + + +L   +     +
Sbjct: 783 VQVHRLVAEGTVEDRIAAMLREKRALAEAVLAGGEAALTEL 823


>gi|291556509|emb|CBL33626.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 454

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 8/201 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + +++   DL    I A N+A  + K  Q+ANGA+ YD+  +   +H++K+ ALE I
Sbjct: 255 AYDEMKKQFILDLPEGEISAANAAVLSGKLSQMANGAI-YDDAGNAVSIHEQKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY +  DL R+           +      +I+ WN G+I +   HPAS 
Sbjct: 314 IESANGKPLLVAYWYQHDLERIMERLHERHIPFSKLDKADSIRRWNNGEISVALIHPASA 373

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GGN +V+F L W LE + Q I R+      Q   +  V V +++   TIDE 
Sbjct: 374 GHGLNLQAGGNTIVWFGLTWSLELYSQTIARLWR----QGQTEETVIVQHIVTDGTIDEQ 429

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           +L+ L+ K   Q  L+ A+K 
Sbjct: 430 ILRALKAKDKTQSALIAAVKA 450


>gi|281357099|ref|ZP_06243589.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
 gi|281316657|gb|EFB00681.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
          Length = 1041

 Score =  141 bits (355), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDLQG-ENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y K ++E    L   +  +A       +  ++  Q+        +      +   K   
Sbjct: 821  LYEKVRKEGLAQLAKYKEGDARGNATVFTTLLRLRQICCHPALLPD-GKGDGIPSAKTDL 879

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEG 107
            L  ++ +   +   +++   F S LA              +  G T ++        N  
Sbjct: 880  LFELLHENIDSNHKMLLFSQFTSLLALTVKELNAEGIPFEYLDGSTRNRQERVDHFNNSP 939

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +IPL      + G GLNL    + ++ +  WW+       +E     R  + G  RAV  
Sbjct: 940  EIPLFLLSLKAGGTGLNLTS-ADTVIIYDPWWNPA-----VELQAADRTHRIGQTRAVSS 993

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              L+ +++I+E +L+    K  I D +++
Sbjct: 994  VKLVVKDSIEEKILELQERKREIFDSVID 1022


>gi|159146258|gb|ABW90592.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  141 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 103/177 (58%), Positives = 140/177 (79%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 119 YHAMEKELFLELGESAIEALNAAAKTIKILQIASGAIYSDDNHNWTAIHDAKIQALESIV 178

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GK+PLLFAHPASCGHGL
Sbjct: 179 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDTNPQTLTNWNSGKVPLLFAHPASCGHGL 238

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 239 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|282862053|ref|ZP_06271116.1| SNF2-related protein [Streptomyces sp. ACTE]
 gi|282563078|gb|EFB68617.1| SNF2-related protein [Streptomyces sp. ACTE]
          Length = 979

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    Y  EE         K+  L
Sbjct: 753 LYEAAVRETMTFIESAEGIARRGLIMKLLGSLKQICNHPAQYLKEEPTRLAGRSGKLALL 812

Query: 60  EVIIEKA--NAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
           + +++        +++   + S            A   +    G  + +    +  +   
Sbjct: 813 DELLDTILAEDGSVLIFTQYVSMARLLSAHLASRAIPSQLLHGGTPVAERERMVDRFQSA 872

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + ++ +  WW+       +E     R  + G  + V V
Sbjct: 873 EVPVFLLSLKAAGTGLNLTRAAH-VIHYDRWWNPA-----VEEQATDRAYRIGQTQPVQV 926

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ T+++ + + LR+K  + D +L + +     +
Sbjct: 927 HRLIAEGTVEDRISELLRSKRALADAVLGSGEAALTEL 964


>gi|237738632|ref|ZP_04569113.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229424115|gb|EEO39162.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 438

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 9/207 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   +L+   I   N+A+ + K LQLANGA+ YDE +   EVHD KI+    
Sbjct: 227 KAYDELEKKAILELEDTEITVANAAALSNKLLQLANGAI-YDENRKVFEVHDCKIERFLE 285

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPAS 118
           +IE+ N  P +V Y+F  D  R+ +A    +   +    P    +WN+G+I +L AHPAS
Sbjct: 286 LIEQLNGKPALVFYNFQHDKDRIIEALKDSKLRIRLLKTPQDQLDWNKGEIDILLAHPAS 345

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W LE +Q         R  + G    V +++L+ + T DE
Sbjct: 346 AAYGLNLQAGGNHVIWFGLNWSLELYQ-----QANKRLHRQGQTEKVIIHHLVCKETRDE 400

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            V++ L+ K  +Q+ L+ +LK   + V
Sbjct: 401 DVMEALQNKGDVQEALVESLKVRIMKV 427


>gi|29828134|ref|NP_822768.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605236|dbj|BAC69303.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 979

 Score =  140 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  EE+        K++ L
Sbjct: 752 LYEAVVRETLAEISGADSMARRGLIVKLLTGLKQICNHPAQFLKEERPNIAGRSGKLELL 811

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G  + +    +  + EG
Sbjct: 812 DELLDTILSEGAGVLVFTQYVRMARLLERHLAARGVPSQFLHGGTPVHEREAMVHRFQEG 871

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 872 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 925

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 926 HRLIAEGTIEDRIADMLLRKRELADAVLGSGESALTEL 963


>gi|254975145|ref|ZP_05271617.1| SNF2-related protein [Clostridium difficile QCD-66c26]
 gi|255092535|ref|ZP_05322013.1| SNF2-related protein [Clostridium difficile CIP 107932]
 gi|255314272|ref|ZP_05355855.1| SNF2-related protein [Clostridium difficile QCD-76w55]
 gi|255516952|ref|ZP_05384628.1| SNF2-related protein [Clostridium difficile QCD-97b34]
 gi|255650054|ref|ZP_05396956.1| SNF2-related protein [Clostridium difficile QCD-37x79]
 gi|260683194|ref|YP_003214479.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260686790|ref|YP_003217923.1| snf2-related protein [Clostridium difficile R20291]
 gi|306519589|ref|ZP_07405936.1| snf2-related protein [Clostridium difficile QCD-32g58]
 gi|260209357|emb|CBA62788.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile CD196]
 gi|260212806|emb|CBE03974.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide
           isomerase [Clostridium difficile R20291]
          Length = 456

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 7/202 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++E   +L  + I A ++A    K LQLANGA+Y ++ K+ KE+H EK++AL+
Sbjct: 255 LKYYKELEKEKILELDRDIITASSAAVAANKLLQLANGAIYDND-KNVKELHREKLEALK 313

Query: 61  VIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            II+ +N  PIIV Y++  D  R +++         ++   I +WN G+I LL  HPAS 
Sbjct: 314 EIIDVSNGKPIIVFYNYKHDYNRLMKEFKSLKPRTIENSKDIYDWNNGRIQLLLCHPAST 373

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+I+V+F L W LE +Q         R  + G +  V +++LI + TIDE 
Sbjct: 374 GHGLNLQSGGSIIVWFGLTWSLELYQ-----QANARLYRQGQRETVIIHHLICKGTIDEQ 428

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           V++ +  K   Q  LL A+K +
Sbjct: 429 VMEAIENKDKGQSALLEAVKAK 450


>gi|126659998|ref|ZP_01731121.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618763|gb|EAZ89509.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 854

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           M  Y   +R+    L   +           +  +K  +         ++     +   K+
Sbjct: 634 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLVLDDAS---LKGSKL 690

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
           +  + I+E+   N    +V   F   L  ++    +               +    ++ +
Sbjct: 691 QLFQEILEELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRVKAF 750

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+  +      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 751 QSGEGDVFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQATDRAYRIGQQRP 804

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 805 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 837


>gi|227496460|ref|ZP_03926744.1| helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834016|gb|EEH66399.1| helicase [Actinomyces urogenitalis DSM 15434]
          Length = 457

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 7/200 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y   + ++   L G  ++A N+A  + K LQ+A+G V YD+     EVH  KI AL  +I
Sbjct: 256 YEALREQMVLGLDGALVDAGNAAGLSNKLLQMASGCV-YDDGGAVVEVHRAKIDALADLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E A+ +P++VAY + SDL RL +    G    +   ++++WN G IP+   HPAS GHGL
Sbjct: 315 EAASGSPVMVAYWYASDLERLLQ-AVPGAVELRSAESMRQWNAGCIPVGLIHPASAGHGL 373

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ LV+ +  W LE +QQ   R+      + G    V +++LIA  TID  VL+ 
Sbjct: 374 NLQAGGHHLVWLTAPWSLELYQQTNARLA-----RQGQTHPVSIHHLIAAGTIDVDVLRA 428

Query: 184 LRTKSTIQDLLLNALKKETI 203
           L  K   Q  L++A++ +  
Sbjct: 429 LERKDVTQSALVDAVRAQLT 448


>gi|254384222|ref|ZP_04999566.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
 gi|194343111|gb|EDX24077.1| SNF2/RAD54 family helicase [Streptomyces sp. Mg1]
          Length = 936

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 80/218 (36%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKAL 59
            Y     E    ++                   Q+ N    Y +E+  +  H   K+  L
Sbjct: 710 LYQAAVDEAMAVIEASEGMERRGMIMKLLASLKQICNHPAQYLKEEQPRIAHRSGKLALL 769

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   + +    +++              G  + +    +  +  G
Sbjct: 770 DELLDTILAEGGSVLVFTQYVTMARLIERHLAARGIANQLLHGGTPVPRREELVDRFQAG 829

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL   G+ ++ F  WW+       +E     R  + G  + V V
Sbjct: 830 EVPVFLLSLKAAGTGLNLTRAGH-VIHFDRWWNPA-----VEEQATDRAYRIGQTQPVQV 883

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ + + L  K  + D +L + +     +
Sbjct: 884 HRIIAEGTVEDRIAEMLEAKRALADAVLGSGESALTEL 921


>gi|159146264|gb|ABW90595.1| DEAD box helicase [Bacteriophage APSE-2]
          Length = 295

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 104/177 (58%), Positives = 140/177 (79%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           YH  ++EL+ +L    IEA N+A+KT+K LQ+A+GA+Y D+  +W  +HD KI+ALE I+
Sbjct: 119 YHAMEKELFLELSDSAIEALNAAAKTIKNLQIASGAIYSDDNHNWTAIHDAKIQALESIV 178

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            ++   P++VAYH+  DL RL KAFP+G+ LD +P T+  WN GKIPLLFAHPASCGHGL
Sbjct: 179 NESGGTPVLVAYHWKHDLERLLKAFPKGKMLDANPQTLTNWNSGKIPLLFAHPASCGHGL 238

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           NLQ GGNILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF+++++A++T+DE+V
Sbjct: 239 NLQDGGNILVFFSHWWDLEQYQQIIERIGPTRQAQAGHNRPVFIHHIVAKDTLDEVV 295


>gi|77412062|ref|ZP_00788388.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
 gi|77161867|gb|EAO72852.1| SNF2 domain protein [Streptococcus agalactiae CJB111]
          Length = 458

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 9/203 (4%)

Query: 4   YHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++    DL+   + A N+AS + K LQ+ANGAVY ++      +HD+K+ ALE I
Sbjct: 256 YKQFKKDYVLADLENGEVTAANAASLSNKLLQMANGAVYSNDH-QVVSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  D+ R+++   +     T+ K    I+EWN+GKI +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDVQRIEERLVKLKVKGTILKTEEDIREWNKGKISVGLLHPASA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ Q TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLIWSLELYQQTNARLWR----QGQQADTVVIQHIVTQGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L +K   Q  L+ A+K + 
Sbjct: 431 ILKALESKDAQQSRLIEAVKAQV 453


>gi|300812688|ref|ZP_07093097.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496315|gb|EFK31428.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 636

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 437 KSYQQLKKDQVLDLPGQEISADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 495

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL   + +     +     P  I+ WN+GKIP++   PA
Sbjct: 496 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 555

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 556 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 610

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 611 RHVLDSLKKKDLSQQALLAAVRR 633


>gi|50843064|ref|YP_056291.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|50840666|gb|AAT83333.1| conserved phage-associated protein [Propionibacterium acnes
           KPA171202]
 gi|315106939|gb|EFT78915.1| protein, SNF2 family [Propionibacterium acnes HL030PA1]
          Length = 458

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+ YDE     EVH  K+ ALE I
Sbjct: 255 VYEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAI-YDEHGDTVEVHGAKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN   ++VAY +  D  R+Q+ FPQ R   K    I+ WN G IPL   HPAS GHG
Sbjct: 314 IEAANGQTVLVAYWYRHDRERIQRRFPQAR-ELKTSADIEAWNRGDIPLGLIHPASAGHG 372

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L A  T+D+ VL+
Sbjct: 373 LNLQSGGHLLVWFSLTWSLELYQQTNARL-----YRQGQAEPVTITHLTATGTLDQAVLK 427

Query: 183 RLRTKSTIQDLLLNALKKETIHV 205
            L  K   Q  L++A+  E   +
Sbjct: 428 ALEAKDMTQAALIDAVATELTTI 450


>gi|313813466|gb|EFS51180.1| protein, SNF2 family [Propionibacterium acnes HL025PA1]
          Length = 458

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/203 (42%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + + +L  DL G+ ++A N+A+ + K LQLA+GA+ YDE     EVH  K+ ALE I
Sbjct: 255 VYEQLKADLVVDLDGQVVDAANAAALSGKLLQLASGAI-YDEHGDTVEVHGAKLDALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN   ++VAY +  D  R+Q+ FPQ R   K    I+ WN G IPL   HPAS GHG
Sbjct: 314 IEAANGQTVLVAYWYRHDRERIQRRFPQAR-ELKTSADIEAWNRGDIPLGLIHPASAGHG 372

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L A  T+D+ VL+
Sbjct: 373 LNLQSGGHLLVWFSLTWSLELYQQTNARL-----YRQGQAEPVTITHLTATGTLDQAVLK 427

Query: 183 RLRTKSTIQDLLLNALKKETIHV 205
            L  K   Q  L++A+  E   +
Sbjct: 428 ALEAKDMTQAALIDAVATELTTI 450


>gi|104773892|ref|YP_618872.1| hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422973|emb|CAI97646.1| Hypothetical protein Ldb0824 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 638

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL   + +     +     P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDSSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|116513899|ref|YP_812805.1| SNF2 family DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093214|gb|ABJ58367.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125562|gb|ADY84892.1| SNF2 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 638

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ I A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 439 KSYQQLKKDQVLDLPGQEISAENAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 497

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL   + +     +     P  I+ WN+GKIP++   PA
Sbjct: 498 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 557

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 558 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 612

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 613 RHVLDSLKKKDLSQQALLAAVRR 635


>gi|160898846|ref|YP_001564428.1| helicase-like protein [Delftia acidovorans SPH-1]
 gi|160364430|gb|ABX36043.1| helicase-like protein [Delftia acidovorans SPH-1]
          Length = 477

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/200 (45%), Positives = 136/200 (68%), Gaps = 2/200 (1%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY +  REL  ++ G+ IEAF++ +K+ K LQ+A+GA Y D++  W  VHDEKI+AL+ 
Sbjct: 275 RQYDEMARELATEIDGQVIEAFSAGTKSQKLLQIASGAAYTDDQGAWALVHDEKIEALKS 334

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E+A   P++V YHF SDLAR++KAFP+ RT   D    +++  G++ +L  HPAS GH
Sbjct: 335 VVEEALGMPLLVFYHFKSDLARIRKAFPKART-LDDKGAKEDFEAGRLQMLVVHPASAGH 393

Query: 122 GLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           G++ LQ+G    VFFS  W  E   Q IERIG TRQ Q+G+ R V V+ L+A++T++E  
Sbjct: 394 GVDGLQHGTCQCVFFSTNWSAENDAQAIERIGPTRQMQSGYDRPVTVHRLVARDTVEESA 453

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           + RLR++ ++ + L   LKK
Sbjct: 454 MYRLRSRVSVDEALRQGLKK 473


>gi|318064550|gb|ADV36504.1| helicase [Edwardsiella phage eiMSLS]
          Length = 449

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   +     K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|283851358|ref|ZP_06368640.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
 gi|283573308|gb|EFC21286.1| SNF2-related protein [Desulfovibrio sp. FW1012B]
          Length = 1072

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 1    MKQY----HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVH 52
            ++ Y     K + ++   +  + +     +     +K  Q+         D       + 
Sbjct: 845  LELYAALAKKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLP 904

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
              K  A + +I         ++V   F   L  ++              G + D+     
Sbjct: 905  SGKFDAFKDLITDCIEEGHKVLVFSQFVQMLHIIRSWMTISQMSFAYLDGSSKDRFDQVD 964

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +   +  I +      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 965  RFNEDESIKVFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQ 1018

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALK 199
            KR VF Y +I QNT++E +L+    K  + + ++   +A K
Sbjct: 1019 KRQVFSYKMICQNTVEEKILKLQEQKKDVAEAIIPGQDAFK 1059


>gi|302873665|ref|YP_003842298.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307686611|ref|ZP_07629057.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302576522|gb|ADL50534.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 457

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 117/200 (58%), Gaps = 7/200 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K ++EL    +  ++ A  +A  + K LQ+ANGAV YDE    KE+H+EK+KAL+ +I
Sbjct: 256 YKKLEKELLLPFEEADVVANTAAVLSNKLLQMANGAV-YDENGEVKEIHNEKLKALDDVI 314

Query: 64  EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           E AN   I+V Y +  DL R  +    +   +      I++WN+GKIP++  HPAS GHG
Sbjct: 315 EAANGKSILVFYSYKHDLERLSKHLKNKAFKVLNTSKDIEKWNKGKIPIMLVHPASAGHG 374

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+GGNI+V+F L W LE +Q         R  + G  + V V ++IA+ TIDE V++
Sbjct: 375 LNLQFGGNIIVWFGLTWSLELYQ-----QANARLYRQGQTQGVIVNHIIAKGTIDEEVMK 429

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K   Q  L+ A+K   
Sbjct: 430 ALENKEKGQSTLIEAVKARL 449


>gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/194 (41%), Positives = 108/194 (55%), Gaps = 7/194 (3%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + +   +L    I A N+AS T K  QLANGA+Y DE  +  E HD K+ ALE IIE A
Sbjct: 259 LKADFILELPEGEITAANAASLTGKLSQLANGAIYDDE-SNIVEFHDRKLDALEDIIESA 317

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           N  P++VAY F  DL R++          K    I +WN G IP+   HPAS GHGLNLQ
Sbjct: 318 NGKPLLVAYWFKHDLQRIK--KHFDVREIKTSKDIIDWNNGDIPVAVIHPASAGHGLNLQ 375

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            GG+ L++F L W LE +QQ   R+    Q        V + ++I + TIDE +L+ L  
Sbjct: 376 AGGSTLIWFGLTWSLELYQQTNARLWRQGQSSG----TVVIEHIITKGTIDERILKALSL 431

Query: 187 KSTIQDLLLNALKK 200
           K   Q+ L++A+K 
Sbjct: 432 KEVSQNALIDAVKA 445


>gi|320530608|ref|ZP_08031660.1| protein, SNF2 family [Selenomonas artemidis F0399]
 gi|320137135|gb|EFW29065.1| protein, SNF2 family [Selenomonas artemidis F0399]
          Length = 429

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 114/202 (56%), Gaps = 7/202 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + +REL   +   +I A  +A+ T K LQ+ANG+V YDE+     +H+ K  AL+
Sbjct: 226 MRKYAEMERELVLSIGASDITAVTAAALTGKLLQMANGSV-YDEDGEAVTIHEAKADALD 284

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            II       ++  Y +  D A             K P  I++WN GKI LL  HPAS G
Sbjct: 285 EIIACNEGKSVMAIYSYRHDRA-TLLRRHPEARELKTPEDIRDWNAGKISLLLVHPASAG 343

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ+GG+I+V++ L W LE++Q         R  + G    V +++LIA++T+DE V
Sbjct: 344 HGLNLQHGGHIVVWYGLTWSLEQYQ-----QTNKRLHRPGQTEPVILHHLIAKDTVDEDV 398

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
           ++ L  KST Q+ +L A+K   
Sbjct: 399 MRALERKSTGQEGMLQAVKARL 420


>gi|284032554|ref|YP_003382485.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283811847|gb|ADB33686.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 979

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 73/212 (34%), Gaps = 20/212 (9%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    RE    ++            S   +  Q+ N    +  E         K+ AL+
Sbjct: 736 LYQAVARETLAKIEQAQGIERRGLVLSLLTQLKQVCNHPAQFLHEPGPLPRRSGKLAALD 795

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK 108
            +++        +++   +      ++               G  + +    ++++  G+
Sbjct: 796 ELLDVILAEGESVLIFSQYVEMGRLIEAHLAARQIGALFLHGGVGVRRRQQMVEQFQAGE 855

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GL L      +V +  WW+       +E     R  + G  R V V+
Sbjct: 856 SQVFLLSLKAGGVGLTLTK-ATHVVHYDRWWNPA-----VEDQATDRAYRIGQDRPVQVH 909

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            L+ ++T+++ +   +  K  + D ++ + + 
Sbjct: 910 RLVTEHTLEDRIATVIAAKRELADAVIGSGEA 941


>gi|315654958|ref|ZP_07907863.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315490919|gb|EFU80539.1| SNF2 domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 452

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 119/199 (59%), Gaps = 7/199 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+ Y E      VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAVNAAVLAGKLTQLASGAI-YTEAGDSIVVHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ  +  K    I+ WN+G+IP+   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQA-SQLKTSADIEAWNDGEIPIGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ G +IL+++SL W LE +QQ   R+      + G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGSSILIWYSLTWSLELYQQTNARL-----YRQGQTKPVTITHIATKDSIDQRIL 426

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L +K+  Q  L++A+ +
Sbjct: 427 SALESKNMTQSALIDAVAQ 445


>gi|134288567|ref|YP_001110806.1| putative helicase [Salmonella phage SETP3]
 gi|125631932|gb|ABN47335.1| putative helicase [Salmonella phage SETP3]
          Length = 821

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY         K W++VHD K+
Sbjct: 611 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 670

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ + FPQ +   K       ++ WN G+I +L 
Sbjct: 671 DALESIVEELQGAPLLVAYQFKHELERILRRFPQAQAFAKGAKGNKQMESWNRGEIEILC 730

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 731 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 790

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 791 DTLDEVVAARTDEKKSVQEELLNYMKRRG 819


>gi|318064334|gb|ADV36398.1| helicase [Edwardsiella phage eiAU]
          Length = 449

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   +     K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 VHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|266623803|ref|ZP_06116738.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
 gi|288864375|gb|EFC96673.1| SNF2 domain protein [Clostridium hathewayi DSM 13479]
          Length = 457

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 9/204 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++ +RE+   L  E I   ++A+ + K LQLANGAVY ++     EVH+ KI+A   
Sbjct: 255 KAYYEMEREMVLALPEEEISVTSAAALSNKLLQLANGAVYDEDHSVH-EVHNCKIEAFME 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           +IE     P +V Y+F  D AR+ KA  +     ++        +WN  KI +L  HPAS
Sbjct: 314 LIESLQGKPALVFYNFQHDRARILKALEKTGLRVRELKTTQDEDDWNARKIDILLTHPAS 373

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W+ E +          R  + G +  V +++LI   T DE
Sbjct: 374 SAYGLNLQQGGNHVIWFGLTWNYELYT-----QANKRLHRQGQEEKVIIHHLICSGTRDE 428

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            V++ L+ K  +Q  ++ +LK   
Sbjct: 429 DVMEALKRKDDVQSWVMESLKARI 452


>gi|289450552|ref|YP_003475678.1| SNF2 family N-terminal domain-containing protein [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185099|gb|ADC91524.1| SNF2 family N-terminal domain protein [Clostridiales genomosp. BVAB3
            str. UPII9-5]
          Length = 1107

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 33/218 (15%)

Query: 2    KQYHKFQRELYCDL---------QGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWK 49
            K Y  +  E    L          GE I   +     S   +  Q+A     + E  H  
Sbjct: 878  KIYQTYLAEARRQLQSITGPDWQNGERISTKHTMEILSLLTRLRQIACHPALFLENYH-- 935

Query: 50   EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKD 97
                 K++ LE I+  A      I++   F + LA                  G +  + 
Sbjct: 936  -GSSGKLELLEEILTTALAGGHRILIFSQFTALLAIIKPLLERLAITYMYIDGGVSPKER 994

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               + ++N G+  +      + G GLNL  G + ++    WW+    Q         R  
Sbjct: 995  TDLVNKFNAGEGEVFLISLKAGGTGLNLT-GADTVILMDPWWNPAVEQ-----QATDRSH 1048

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G +R V VY LIA+ TI+E +      K  + D ++
Sbjct: 1049 RLGQQRRVQVYRLIAKGTIEEKIRNLQERKQNLIDQVV 1086


>gi|258405011|ref|YP_003197753.1| SNF2-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257797238|gb|ACV68175.1| SNF2-related protein [Desulfohalobium retbaense DSM 5692]
          Length = 1068

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 1    MKQY----HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVH 52
            M+ Y     K + ++  D+  + I     +     +K  Q+         D       + 
Sbjct: 841  MELYASLAKKLKEQVLRDVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLP 900

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTI 101
              K +  + ++     +   ++V   F   L  ++              G + D+     
Sbjct: 901  SGKFETFKDLVTGIIDDGHKVLVFSQFVQMLHIIRSWLSMNKVPFAYLDGTSKDRFEQVE 960

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               N   IP+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 961  NFNNNPDIPIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VEDQATDRTHRIGQ 1014

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + VF Y LI +NT++E +L+    K  + + ++
Sbjct: 1015 TKKVFSYKLICENTVEEKILKLQEQKKGVAEAII 1048


>gi|302561960|ref|ZP_07314302.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302479578|gb|EFL42671.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 652

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 21/212 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +                Q+ N    +  EE+        K++ L
Sbjct: 425 LYEAVVREALAEIAGADGVTRRGLIVKLLTGLKQICNHPAQFLKEERPVVAGRSGKLELL 484

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      L++              G  +      ++ + +G
Sbjct: 485 DELLDTVLTEGAGVLVFTQYVRMARLLERHLAARGVPAQFLHGGTPVAGREAMVRRFQDG 544

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 545 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 598

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + +IA+ T+++ +   L  K  + D +L + +
Sbjct: 599 HRIIAEGTVEDRIAALLERKRELADAVLGSGE 630


>gi|297587094|ref|ZP_06945739.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
 gi|297575075|gb|EFH93794.1| SNF2 domain protein [Finegoldia magna ATCC 53516]
          Length = 447

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 125/198 (63%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+V YDE+K+   +HD K+ ALE +
Sbjct: 255 IYETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSV-YDEDKNMIHIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++          K    ++EWN+G IP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIK--DRFDVRELKASEDLKEWNQGNIPVAIIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALENKNKTQAALIDAVKA 444


>gi|297190045|ref|ZP_06907443.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150349|gb|EFH30576.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 700

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    +   G                Q+ N    Y  EE+   E    K++ L
Sbjct: 473 LYEAVVRETLAAISEAGGMERRGLVVKLLTALKQICNHPAQYLKEERPRVEGRSGKLELL 532

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L+               G  + +    +  +  G
Sbjct: 533 DELLDTILSEDASVLVFTQYVQMARLLEGHLARRGVRTQFLHGGTPVPEREAMVNRFQNG 592

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 593 EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQDRPVQV 646

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ + + L  K  + D +L A +     +
Sbjct: 647 HRLIAEGTIEDRIARMLERKKDLADSVLGAGEAALTEL 684


>gi|291449545|ref|ZP_06588935.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|291352492|gb|EFE79396.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
          Length = 946

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++                    Q+ N    +  EE+        K++ L
Sbjct: 719 LYEAVVRETLAEISAADGFERRGLVMKLLTSLKQICNHPAQFLKEEQPRIADRSGKVELL 778

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   +      L++              G  + +    +  +  G
Sbjct: 779 DELLDTILAERGSVLVFTQYVQMARLLEEHLAARGVDTQFLHGGTPVARREEMVARFQSG 838

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL   G+ +V F  WW+       +E     R  + G  + V V
Sbjct: 839 EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEAQATDRAYRIGQTQPVQV 892

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 893 HRLIAEGTIEDRIAGMLARKQGLADAVLGSGEAALTEL 930


>gi|239946094|ref|ZP_04698031.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 15998]
 gi|239992567|ref|ZP_04713231.1| SNF2/RAD54 family helicase [Streptomyces roseosporus NRRL 11379]
          Length = 1005

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++                    Q+ N    +  EE+        K++ L
Sbjct: 778 LYEAVVRETLAEISAADGFERRGLVMKLLTSLKQICNHPAQFLKEEQPRIADRSGKVELL 837

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   +      L++              G  + +    +  +  G
Sbjct: 838 DELLDTILAERGSVLVFTQYVQMARLLEEHLAARGVDTQFLHGGTPVARREEMVARFQSG 897

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL   G+ +V F  WW+       +E     R  + G  + V V
Sbjct: 898 EAPVFLLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEAQATDRAYRIGQTQPVQV 951

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 952 HRLIAEGTIEDRIAGMLARKQGLADAVLGSGEAALTEL 989


>gi|318064442|gb|ADV36452.1| helicase [Edwardsiella phage eiDWF]
          Length = 449

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/208 (45%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           K Y   +  L+ +L+   IEA N+A+KT KCLQ+A GA Y   +     K W E+H  K+
Sbjct: 238 KIYDDMENALFAELESGEIEASNAAAKTAKCLQIAGGACYITTDDGEASKEWTEIHKAKL 297

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            ALE IIE+ N +P++VAY +  DL RL K FPQGR + K       + +WN GK+P++F
Sbjct: 298 DALESIIEELNGSPLLVAYQYKHDLVRLLKRFPQGRAMRKGLKGNNDMADWNAGKVPIMF 357

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG  L FF+  W+ E++ Q++ERIG  RQ QAG  R V++Y + A+
Sbjct: 358 XHPASAGHGLNLQDGGCHLAFFNDTWNYEQYAQIVERIGPVRQHQAGHPRTVYIYIIQAR 417

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE+V  R   K+ +QDLL++ +K++
Sbjct: 418 GTLDEVVALRRDDKAEVQDLLMDYMKRK 445


>gi|300933478|ref|ZP_07148734.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 453

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+ YDE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAI-YDEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  D  R+      G         I +WN  ++PL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDRERI-TTRFPGARELTTSADITQWNAREVPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|325478705|gb|EGC81816.1| type III restriction enzyme, res subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 448

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 125/198 (63%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L   ++ ++I+A N+A+ + K LQ+A+G+V YDE+K+   +HD K+ ALE +
Sbjct: 255 IYETLKKDLVVSIKDKDIDAVNAAALSNKLLQMASGSV-YDEDKNMIHIHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++          K     +EWN+GKIP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIK--DRFDLRELKTSEDFKEWNQGKIPVAIIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALENKNKTQAALIDAVKA 444


>gi|29826907|ref|NP_821541.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29604004|dbj|BAC68076.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 950

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEK-----HWKEVHDEK 55
            Y    RE    +      A             Q+ N    Y +E              K
Sbjct: 720 LYEAVVRETMAKIAEAEGIARRGLVLKLLTALKQICNHPAQYLKEHSLRQSTPLNGRSGK 779

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQE 103
           +  L+ +++        ++V   +      L+K              G  +      +  
Sbjct: 780 LDLLDELVDTITAEGESVLVFTQYKQMATLLEKHLAERGVPTLFLHGGTPVTAREEMVDR 839

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G++P+      + G GLNL      +V +  WW+       +E     R  + G  +
Sbjct: 840 FQRGEVPVFLLSLKAAGTGLNLTR-ATHVVHYDRWWNPA-----VEDQATDRAYRIGQDK 893

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ LIA+ T+++ V + L  K  + D ++ + +     +
Sbjct: 894 PVQVHKLIAEGTVEDKVAKLLEAKRALADAVVGSGEAALTEL 935


>gi|239908234|ref|YP_002954975.1| putative helicase [Desulfovibrio magneticus RS-1]
 gi|239798100|dbj|BAH77089.1| putative helicase [Desulfovibrio magneticus RS-1]
          Length = 1075

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 28/221 (12%)

Query: 1    MKQY----HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVH 52
            ++ Y     K + ++   +  + +     +     +K  Q+         D       + 
Sbjct: 848  LELYAALAKKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLP 907

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTI 101
              K  A + +I         ++V   F   L  ++              G + D+     
Sbjct: 908  SGKFDAFKDLITDCIEEGHKVLVFSQFVQMLHIIRSWMSISQMPFCYLDGSSKDRFDQVD 967

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +      I +      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 968  KFNQTEDIKVFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQ 1021

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALK 199
             R VF Y LI QNT++E +L+    K  + + ++   +A K
Sbjct: 1022 LRQVFSYKLICQNTVEEKILKLQEQKKDVAEAVIPGQDAFK 1062


>gi|315656930|ref|ZP_07909817.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492885|gb|EFU82489.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 458

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y      W  VH+ K+  LE 
Sbjct: 254 KVYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIYTS-NGQWTAVHERKLDVLED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY F  D  R+   FPQ R   K    I+ WN+G+I L   HPAS GH
Sbjct: 313 LIEAANGNPLLVAYWFTHDRQRITARFPQAR-ELKTSADIETWNKGEITLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V + +L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITHLVAEGTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  L++A+  E 
Sbjct: 427 KALDAKDATQAALIDAVAHEI 447


>gi|32141133|ref|NP_733524.1| helicase [Streptomyces coelicolor A3(2)]
 gi|24413742|emb|CAD55164.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 890

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  E++        K++ L
Sbjct: 663 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 722

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 723 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 782

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 783 DAPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 836

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 837 HRLIAEGTIEDRIAALLNRKRELADAVLGSGEAALTEL 874


>gi|50914495|ref|YP_060467.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
 gi|40218555|gb|AAR83209.1| phage helicase [Streptococcus pyogenes]
 gi|50261600|gb|AAT72368.1| helicase [Streptococcus pyogenes]
 gi|50903569|gb|AAT87284.1| Phage-related DNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 458

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F++E    +L G  + A N+AS   K +QL+NGAV Y ++     +H++K+ ALE I
Sbjct: 256 YIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAV-YSDDHTVVPLHEQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPASC 119
           +E AN  P++VAY F  DLAR+     + +   +       I+EWN+G +P+   HPA  
Sbjct: 315 LESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVLKTEEDIREWNKGNVPVGLIHPAGA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWR----QGQEAETVVIQHIVTEGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q+ L+ A+K + 
Sbjct: 431 ILKALGNKDAQQERLIEAVKAQV 453


>gi|126348422|emb|CAJ90145.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
          Length = 976

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 82/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  E++        K++ L
Sbjct: 749 LYEAVVREALAEIAGADSMARRGMIVKLLTSLKQICNHPAQFLKEDRPRITGRSGKLELL 808

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      + ++V   +      L++              G ++      ++ + +G
Sbjct: 809 DELLDTILAEESSVLVFTQYVQMARLLERHLTARGVSSLFLHGGTSVTARESLVRRFQDG 868

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V F  WW+       +E     R  + G  R V V
Sbjct: 869 EVPVFLLSLKAAGTGLNLTR-AEHVVHFDRWWNPA-----VEAQATDRAYRIGQTRPVQV 922

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + L+A+ T+++ +   L  K  + D +L A +     +
Sbjct: 923 HRLVAEGTVEDRIAALLHRKRKLADAVLGAGEAALTEL 960


>gi|328913305|gb|AEB64901.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens LL3]
          Length = 424

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 121/199 (60%), Gaps = 7/199 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++L       ++ A  +A  + K LQLANGAV YDE    +++HDEK+ ALE I+
Sbjct: 229 YKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAV-YDENGEIQKLHDEKLNALEDIV 287

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           + AN  PI+V Y +  DL R+Q+ F + +TLD     I +WN GKI +L AHPAS GHGL
Sbjct: 288 DAANGKPILVFYSYKHDLERIQQKFKKAKTLDSSRE-IADWNNGKIEMLLAHPASTGHGL 346

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+++V+F + W LE +Q         R  + G K +V V +L+ + T+DE V++ 
Sbjct: 347 NLQDGGHVIVWFGMTWSLELYQ-----QANARLDRQGQKHSVIVNHLVTEGTVDEDVMRA 401

Query: 184 LRTKSTIQDLLLNALKKET 202
           L  K+  Q+ L+ A+K   
Sbjct: 402 LEGKAVGQNALMEAVKARL 420


>gi|319757800|gb|ADV69742.1| phage related DNA helicase [Streptococcus suis JS14]
          Length = 458

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F++E    +L G  + A N+AS T K +QL+NGAV Y ++     +H++K+ ALE I
Sbjct: 256 YSQFKKEYVMSELDGLEVTAANAASLTNKLVQLSNGAV-YSDDHTVVALHEQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPASC 119
           +E AN  P++VAY F  DLAR+     + R   +       I+EWN+G +P+   HPA  
Sbjct: 315 LESANGEPVLVAYWFKHDLARIINRIEKLRVKSRVLKTEEDIREWNKGNVPVGLLHPAGA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHNLVWFGLTWSLELYQQTNARLWR----QGQESETVVIQHIVTEGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q+ L+ A+K + 
Sbjct: 431 ILKALENKDAQQERLIEAVKAQV 453


>gi|126660775|ref|ZP_01731871.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126617919|gb|EAZ88692.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   +           +  +K  +         ++     +   K+
Sbjct: 1180 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLVLDDAS---LKGSKL 1236

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            +  + I+E+   N    +V   F   L  ++    +               +    ++ +
Sbjct: 1237 QLFQEILEELLDNRHKALVFSQFVDHLQIIKSHLDRQKISYQYLDGSTPKKERQRRVKAF 1296

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1297 QSGEGDVFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQATDRAYRIGQQRP 1350

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 1351 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 1383


>gi|331085752|ref|ZP_08334835.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406675|gb|EGG86180.1| hypothetical protein HMPREF0987_01138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 448

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 7/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F+R++   +  E ++A N+A+ + K LQ+ANGAV Y E+K    +HD K+ ALE 
Sbjct: 252 KLYQSFERDMVLSIGEEELDAANAAALSNKLLQMANGAV-YGEDKKVISIHDRKLDALED 310

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  PI+VAY +  DL R+QK  P+ R +D     I +WN G+I +   HPAS GH
Sbjct: 311 LVEAANGKPILVAYWYKHDLMRIQKRLPEARVID-TSKDITDWNHGEIAIGLIHPASAGH 369

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG  +V+F L W LE +QQM  R+      + G K  V +++LI + T DE V+
Sbjct: 370 GLNLQEGGCTIVWFGLTWSLELYQQMNARLW-----RQGQKHTVVIHHLITKGTHDEDVM 424

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K T Q  L++A++   
Sbjct: 425 KALEKKETGQSALIHAVRARI 445


>gi|120555512|ref|YP_959863.1| SNF2-related protein [Marinobacter aquaeolei VT8]
 gi|120325361|gb|ABM19676.1| SNF2-related protein [Marinobacter aquaeolei VT8]
          Length = 1086

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 27/209 (12%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       R+L  + +G            +K  Q+       + E+        K
Sbjct: 866  LYETIRATMDKRIRKLLAE-KGAARSQIEILDALLKLRQICCHPALLNPEETA---GSAK 921

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWN 105
            + +L  ++E+       +I+   F S LA ++          +            ++ + 
Sbjct: 922  LDSLMEMLEQLLDEGRKVIIFSQFTSMLALIETTLKAAGIGYEKLTGQTRDRATPVKRFQ 981

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+ P+      + G GLNL    + ++ +  WW+    Q         R  + G  + V
Sbjct: 982  NGESPVFLISLKAGGTGLNLTA-ADCVIHYDPWWNPAAEQ-----QATDRAWRIGQDKPV 1035

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            FVY LI + T++E +      KS + D L
Sbjct: 1036 FVYRLITEGTVEERIQALQARKSQLADGL 1064


>gi|46449909|gb|AAS96558.1| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1055

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+         D       +   K  A +
Sbjct: 836  RKLKEQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKLDMPGFSTNLPSGKFDAFK 895

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N   I
Sbjct: 896  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQISGTPFCYLDGTSKDRFEQVDKFNNSPDI 955

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 956  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1009

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI QNT++E +L+    K  + + ++       +L +E + +
Sbjct: 1010 LICQNTVEEKILKLQDMKRGVAEAIIPGQETWKSLTREDLEM 1051


>gi|313895516|ref|ZP_07829072.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975642|gb|EFR41101.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 454

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y + ++++   L G  I+A ++A+ + K LQ+ANGAV Y E      +HD K+ ALE +
Sbjct: 255 LYDRMKQDMVVALGGTEIDAVSAAALSGKLLQMANGAV-YTENGKSVHLHDRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY +  DL R+++  P      +    I+ WN  KI +   HPAS GHG
Sbjct: 314 VESANGKPVLVAYWYRHDLERIKERLP--VQEIRSSADIENWNAEKISVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+GG+ L++F L W LE +QQ   RI      + G K  V ++++I   TIDE V+Q
Sbjct: 372 LNLQFGGSTLIWFGLTWSLELYQQTNARI-----YRQGQKGTVVIHHIITVGTIDENVMQ 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L++A+K 
Sbjct: 427 ALGRKNKTQTALIDAVKA 444


>gi|116623003|ref|YP_825159.1| SNF2-like protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116226165|gb|ABJ84874.1| SNF2-related protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 1073

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 78/215 (36%), Gaps = 25/215 (11%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + ++    +L      QG      +     ++  Q A      D  +  +     K
Sbjct: 851  KHYDELRKHYRENLLLRVQQQGIGKNKMHVLEALLRLRQAACHPGLLDAARIQE--PSAK 908

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEW 104
            +  L   + +        +V   F S LA ++           +  G T D+        
Sbjct: 909  LDVLLDQLAELREEGHKALVFSQFTSLLAIVRDRLDAAGVRYEYLDGSTRDRQARVDTFQ 968

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+ +  L      + G GLNL      +     WW+       +E   V R  + G  R 
Sbjct: 969  NDPQCTLFLISLKAGGLGLNLTA-AEYVFLLDPWWNPA-----VEAQAVDRAHRIGQTRP 1022

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VF Y LIA++T++E VL+  +TK  + D +L    
Sbjct: 1023 VFAYRLIARDTVEEKVLELQKTKRELADAILGEDN 1057


>gi|34495520|ref|NP_899735.1| SWI/SNF family helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101375|gb|AAQ57744.1| probable SWI/SNF family helicase [Chromobacterium violaceum ATCC
           12472]
          Length = 910

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 25/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   ++E    +   +  A      + ++  +  +          +     +   K+ A
Sbjct: 688 VYEAMRQEALARVAEADPAAGGQTMQALAELTRLRRFCCHPKLTQPDSA---LPASKLAA 744

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE 106
              I E+   N    +V   F   LA                  G    +   ++  +  
Sbjct: 745 FAEICEELLDNGHKALVFSQFVDHLALVAEHLRQRGVRFHYLDGGTPSRQRKASMDAFQA 804

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   L      + G GLNL    + ++    WW+       +E     R  + G +R V 
Sbjct: 805 GDGDLFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAYRMGQQRPVT 858

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L+A  TI+E +++  R K  + D LL
Sbjct: 859 VYRLVAAGTIEEKIVELHRDKRALADSLL 887


>gi|313123514|ref|YP_004033773.1| superfamily ii DNA/RNA helicase, snf2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280077|gb|ADQ60796.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 626

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 120/203 (59%), Gaps = 10/203 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + +++   DL G+ + A N+A    +  QLA+GA+Y ++ +H++E+  EKI++   
Sbjct: 427 KSYQQLKKDQVLDLPGQELSADNAAVLAGRLRQLASGAIYEEDGEHYQEIFAEKIESC-F 485

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----DPCTIQEWNEGKIPLLFAHPA 117
            +    A P +VAY+F SD +RL   + +     +     P  I+ WN+GKIP++   PA
Sbjct: 486 YLTSNTATPSLVAYYFKSDASRLLAFYRKNGVKAELFDGSPGMIRRWNKGKIPVMLVQPA 545

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ GG+ L++F+L W LE++QQM  R+      + G K+ V +++L+ + TID
Sbjct: 546 SAGAGLNLQEGGHTLIWFTLPWSLEQYQQMNGRL-----YRQGQKKPVIIHHLLTKGTID 600

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
             VL  L+ K   Q  LL A+++
Sbjct: 601 RHVLDSLKKKDLSQQALLAAVRR 623


>gi|120602191|ref|YP_966591.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|304569715|ref|YP_011298.2| Snf2 family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562420|gb|ABM28164.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|311234232|gb|ADP87086.1| SNF2-related protein [Desulfovibrio vulgaris RCH1]
          Length = 1071

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+         D       +   K  A +
Sbjct: 852  RKLKEQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKLDMPGFSTNLPSGKFDAFK 911

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N   I
Sbjct: 912  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQISGTPFCYLDGTSKDRFEQVDKFNNSPDI 971

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 972  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1025

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI QNT++E +L+    K  + + ++       +L +E + +
Sbjct: 1026 LICQNTVEEKILKLQDMKRGVAEAIIPGQETWKSLTREDLEM 1067


>gi|304439204|ref|ZP_07399122.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372336|gb|EFM25924.1| SNF2 domain protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 448

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 123/198 (62%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +++L  +++ ++I+A N+A+ + K LQ+A+G+V YDE K+   +H+ K+ ALE +
Sbjct: 255 IYETLKKDLVVNIKDKDIDAVNAAALSNKLLQMASGSV-YDEYKNMIHIHNRKLDALEDL 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P+++AY + SDL R++          K     +EWN+ KIP+   HPAS GHG
Sbjct: 314 IEGANGKPVLIAYWYKSDLKRIK--DRFDVRELKTSEDFKEWNQSKIPVAVIHPASAGHG 371

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L++FSL W LE ++Q   R+      + G K  V +++++A+ TIDE V++
Sbjct: 372 LNLQAGGSTLIWFSLTWSLELYEQTNARL-----YRQGQKETVVIHHILAKGTIDEDVMK 426

Query: 183 RLRTKSTIQDLLLNALKK 200
            L  K+  Q  L+ A+K 
Sbjct: 427 ALENKNKTQAALIEAVKA 444


>gi|302525636|ref|ZP_07277978.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
 gi|302434531|gb|EFL06347.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces sp.
           AA4]
          Length = 713

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 21/212 (9%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++                +  Q+ N   +Y  E          K+ A 
Sbjct: 488 LYEAVVRENLAQIREAQGVQRRGQVLKLLTELKQICNHPAHYLKESAGVLSGRSGKLAAF 547

Query: 60  EVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           E +++        ++V   +           ++               +    +  +  G
Sbjct: 548 EELLDVILDEGESVLVFSQYVRLCRLLERRLAERGLPTALLSGEVGPKQRDEMVAAFQSG 607

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      ++ +  WW+       +E     R  + G  R V V
Sbjct: 608 EVPVFLLSLKAGGVGLNLTQ-ATHVIHYDRWWNPA-----VEDQATDRAYRIGQDRPVQV 661

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + LIA+ T++E +   L TK  + D ++ A +
Sbjct: 662 HRLIAEGTLEERIAAVLETKRGLADAVVGAGE 693


>gi|260579063|ref|ZP_05846962.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602814|gb|EEW16092.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
          Length = 453

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 121/197 (61%), Gaps = 7/197 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + E+  DL G+ I+A N+A+ + K LQLA+GA+ YDE+ +   VHD K+ ALE 
Sbjct: 254 KAYERLRDEMVLDLDGQVIDAANAAALSGKLLQLASGAI-YDEDGNTVVVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E AN  P++VAY F  DL R+ + FPQ R L      I  WN  +IPL   HPAS GH
Sbjct: 313 LVEAANGQPLLVAYWFKHDLQRITERFPQARELT-TSTDIAAWNAREIPLALIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GGN+LV+FSL W LE +QQ   R+      + G  + V + +L A +T+DE VL
Sbjct: 372 GLNLQQGGNLLVWFSLTWSLELYQQTNARL-----YRQGQDQPVTITHLAADHTLDEAVL 426

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K   Q  L+NA+
Sbjct: 427 AALDNKDMTQAALINAV 443


>gi|126660084|ref|ZP_01731204.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
 gi|126618604|gb|EAZ89353.1| SWI/SNF family helicase [Cyanothece sp. CCY0110]
          Length = 1400

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   +           +  +K  +         +   +  +   K+
Sbjct: 1180 MALYEALRRDSLEKLSESDDSGGQKHLQVLAALMKLRRCCCHPSLILD---YSSLKGSKL 1236

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEW 104
            +  + I+E+   N    +V   F   L  +           +         +    ++ +
Sbjct: 1237 QLFQEILEELLDNRHKALVFSQFVDHLQIVKSHLERQKISYQYLDGSTPKKERQRRVKAF 1296

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1297 QSGEGDVFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQATDRAYRIGQQRP 1350

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L+A++TI+E ++Q    K  + D LL+ 
Sbjct: 1351 VTVYRLVAKDTIEEKIVQLHHRKRDLADSLLSG 1383


>gi|254452793|ref|ZP_05066230.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
 gi|198267199|gb|EDY91469.1| helicase, Snf2 family [Octadecabacter antarcticus 238]
          Length = 970

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 17/203 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               RE     +G            +K  Q+         +   K     K   L  I+E
Sbjct: 754 DARVREALAK-KGLAGSRITVLDALLKLRQVCCDPRLVKLDAAAKVKESAKFSRLMEIME 812

Query: 65  K--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           +  +    +++   F   L  ++                       I ++  G   +   
Sbjct: 813 ELMSEGRKVLIFSQFVEMLRLIESEVQSRGWSYAMLHGQTRDRSSEIDKFQSGDAQVFLI 872

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + ++ +  WW+       +ER  + R  + G  + VFVY L  + 
Sbjct: 873 SLKAGGTGLNLTA-ADTVILYDPWWNPA-----VERQAMDRAHRIGQDKPVFVYRLYTEG 926

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T++  +      K  + D L   
Sbjct: 927 TVESAIQNMQARKQALADALFEG 949


>gi|282534217|gb|ADA82325.1| putative helicase [Escherichia phage K1H]
          Length = 477

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY         K W++VHD K+
Sbjct: 267 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 326

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 327 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 386

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 387 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 446

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 447 DTLDEVVAARTDEKKSVQEELLNYMKRRG 475


>gi|168703233|ref|ZP_02735510.1| SNF2-related protein [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 32/228 (14%)

Query: 2    KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y + +      L       G         +  ++  Q A      D  K        K
Sbjct: 876  QVYDELRDHYRASLLAHVDSVGLKRSQIQVLAALMRLRQAACHPGLID--KKRTGDASAK 933

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEW 104
            +  L   +++   +    +V   F S L  ++           +  GRT D+D    +  
Sbjct: 934  LDYLLPQLQELAESGQKALVFSQFTSLLDIVRKRLTAEGIQFEYLDGRTRDRDKRVERFQ 993

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    L      + G GLNL      +     WW+        E   + R  + G  + 
Sbjct: 994  TDPACKLFLVSLKAGGVGLNLTA-AEYVFLLDPWWNPAA-----EAQAIDRSYRIGQTKP 1047

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-------ALKKETIHV 205
            VF Y LIA+ T++E VL+  ++K  + D +L         LK+E + +
Sbjct: 1048 VFAYRLIARGTVEEKVLELQQSKRELADAILGGDGKGVTDLKREDLEL 1095


>gi|303248715|ref|ZP_07334968.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
 gi|302489880|gb|EFL49808.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
          Length = 1072

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 24/213 (11%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++   +  + +     +     +K  Q+         D       +   K  A +
Sbjct: 853  KKLKEQVLATVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDLPGVNTNLPSGKFDAFK 912

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +   +  I
Sbjct: 913  DLITDCIEEGHKVLVFSQFVQMLHIIRSWVTISQIPFAYLDGSSKDRFDQVDRFNEDENI 972

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++ +  WW+       +E     R  + G +R VF Y 
Sbjct: 973  KVFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQQRQVFSYK 1026

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL---NALK 199
            +I QNT++E +L+    K  + + ++   +A K
Sbjct: 1027 MICQNTVEEKILKLQEQKKDVAEAIIPGQDAFK 1059


>gi|227015822|gb|ACP17919.1| putative non-specific serine/threonine protein kinase [Pseudomonas
            nitroreducens]
          Length = 1093

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 82/219 (37%), Gaps = 24/219 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y        R++  ++  + + +         +K  Q+         +      H  K+
Sbjct: 868  LYETVRLAMDRKVREEILQKGLASSQFVVLDALLKLRQVCCDPRLLQPDLPAT--HSGKL 925

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
             AL  ++++  A    +++   F S LA +Q                       + ++ +
Sbjct: 926  SALLEMLDELLAEGRRVLLFSQFTSMLALIQAQLQARNIPYALLTGETRDRRQPVDDFQQ 985

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++PL      + G GLNL    + ++ +  WW+    Q         R  + G  + VF
Sbjct: 986  GRVPLFLISLKAGGTGLNLTT-ADTVIHYDPWWNPAVEQ-----QATDRAYRIGQDKPVF 1039

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            VY LIA+ T++E + Q    K+ +   +L   K   + +
Sbjct: 1040 VYKLIARGTLEEKIQQLQARKAALAAGVLEDGKNTGLQL 1078


>gi|326329299|ref|ZP_08195624.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325952874|gb|EGD44889.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 907

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 23/220 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIK 57
            Y  F R     ++  + +         S      Q+ N    +  +E        +KI+
Sbjct: 670 LYEAFVRNAMERIERLDADDPQRRGLVLSLLTGLKQICNHPAQFLKQEAGRITGRSQKIE 729

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
            L+ ++      +  ++V   + +    L+  +            G  + +    ++ + 
Sbjct: 730 LLDELVSTVLAESGAVLVFTQYVAMARLLEAHWAASGVAHQFLHGGTPVAERSRMVERFQ 789

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG++P+      + G GLNL    + ++    WW+       +E     R  + G  R V
Sbjct: 790 EGEVPVFLLSLKAGGVGLNLTR-ADHVIHVDRWWNPA-----VEDQATDRAHRIGQTRTV 843

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+ LI Q T++E V + L+ K  + D +L A +     +
Sbjct: 844 QVHRLITQGTVEERVAELLQRKRVLADAVLGAGEAAFTEL 883


>gi|284031541|ref|YP_003381472.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283810834|gb|ADB32673.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 961

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 79/219 (36%), Gaps = 22/219 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y    REL   ++  +  A             Q+ N  V Y  +           K++ 
Sbjct: 733 LYEATVRELMDAVRASDAMARRGLIVKLLTGLKQICNHPVQYLKEPAGAKLTGRSGKLEL 792

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
           L+ ++         ++V   +      L++              G  + K    ++ +  
Sbjct: 793 LDELLGTILAEDGAVLVFTQYVEMARLLERHLADRGVPTQLLHGGTPVRKREEMVERFQA 852

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+IP+      + G GLNL    + +V +  WW+       +E     R  + G  R V 
Sbjct: 853 GEIPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEDQATDRAYRIGQIRPVQ 906

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V+ LIA+ TI++ +   L  K  + D +L A +     +
Sbjct: 907 VHRLIAEGTIEDRIAAMLAGKRALADSVLTAGEAALTEL 945


>gi|282535269|gb|ADA82475.1| putative helicase [Escherichia phage K1ind3]
 gi|282547318|gb|ADA82375.1| putative helicase [Escherichia phage K1ind1]
 gi|282547370|gb|ADA82426.1| putative helicase [Escherichia phage K1ind2]
          Length = 474

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY         K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDTKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|297569291|ref|YP_003690635.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925206|gb|ADH86016.1| SNF2-related protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1309

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 22/212 (10%)

Query: 3    QYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y   +R+    L+               ++ +K  +          +        E + 
Sbjct: 1089 LYEALRRQARATLKNGANRDRPGAPLQVLAEIMKLRRACCHPRLVLPDSTMPGAKLELLT 1148

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEG 107
             +   + + N   I+V   F   LA +++   + +   +              ++++  G
Sbjct: 1149 KVVAELLE-NRHRILVFSQFVDHLAIVRQYLDEQQISYQYFDGATPARVRQQRVRDFQAG 1207

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  L      + G GLNL    + ++    WW+       +E     R  + G  + V +
Sbjct: 1208 RGKLFLISLRAGGLGLNLTA-ADYVIHLDPWWNPA-----VEEQASDRAHRIGQDKPVTI 1261

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI   TI+E +L   + K  +   LL+A +
Sbjct: 1262 YRLITTGTIEEKILAMHQQKRHLAAELLDATR 1293


>gi|227875061|ref|ZP_03993206.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304390304|ref|ZP_07372257.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|306817348|ref|ZP_07451093.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
 gi|227844339|gb|EEJ54503.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304326060|gb|EFL93305.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304649789|gb|EFM47069.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 7/202 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + + +L  DL G  I+A N+A+ + K LQLA+GA+Y  +   W  VHD K+ ALE 
Sbjct: 254 KIYEQLKADLVLDLDGATIDAANAAALSGKLLQLASGAIYTGD-GQWAPVHDRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           + E AN +P++VAY F  D  R+   FPQ R   K    I+ WN G+I L   HPAS GH
Sbjct: 313 LYEAANGSPLLVAYWFTHDRKRITARFPQAR-ELKTSADIEAWNRGEIALGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG++LV+FSL W LE +QQ   R+      + G    V +  L+A+ T+DE VL
Sbjct: 372 GLNLQAGGHLLVWFSLTWSLELYQQTNARL-----YRQGQSEPVTITNLVAEGTLDETVL 426

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
           + L  K   Q  L++A+  E  
Sbjct: 427 KALDAKDATQAALIDAVAAEIT 448


>gi|256828244|ref|YP_003156972.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
 gi|256577420|gb|ACU88556.1| Non-specific serine/threonine protein kinase [Desulfomicrobium
            baculatum DSM 4028]
          Length = 1068

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+         D       +   K +A +
Sbjct: 849  KKLKEQVLQDVDEKGIGQSQISILDALLKLRQICCHPRLLKLDMPGFNANLSSGKFEAFK 908

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
             ++     +   ++V   F   L  ++              G + D+     +  N  +I
Sbjct: 909  DLVTTIIDDGHKVLVFSQFVQMLHIIRNWLHMVEIPFCYLDGTSKDRFEQVDKFNNTPEI 968

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 969  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VEDQATDRTHRIGQTRQVFAYK 1022

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I +NT++E +L+   +K  I D ++
Sbjct: 1023 MICENTVEEKILKLQESKKGIADSII 1048


>gi|218885893|ref|YP_002435214.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756847|gb|ACL07746.1| Non-specific serine/threonine protein kinase [Desulfovibrio vulgaris
            str. 'Miyazaki F']
          Length = 1069

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+         D       +   K  A +
Sbjct: 850  RKLKEQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  N  +I
Sbjct: 910  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINAIPFCYLDGTSKDRFDQVDRFNNTPEI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI +NT++E +L+    K  + + ++       +L +E + +
Sbjct: 1024 LICENTVEEKILKLQDMKRGVAEAIIPGQEAWKSLTREDLEM 1065


>gi|198283188|ref|YP_002219509.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218667367|ref|YP_002425417.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|198247709|gb|ACH83302.1| Non-specific serine/threonine protein kinase [Acidithiobacillus
            ferrooxidans ATCC 53993]
 gi|218519580|gb|ACK80166.1| DNA helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
          Length = 1113

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 74/210 (35%), Gaps = 18/210 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + ++E+    +G            +K  Q+         EK  K     K+  L  +I 
Sbjct: 894  ERIRQEIAA--KGFQRSQIVILDAMLKLRQVCCDPRLLKSEKARKVQDSAKLALLMEMIP 951

Query: 65   K--ANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +  A    I++   F   L                   +       I  +  G++PL   
Sbjct: 952  ELLAEGRQILLFSQFTEMLALISARLDKMHIPYVLLTGSTQDRKTPIDRFQRGEVPLFLI 1011

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ +  WW+        E     R  + G KR VFVY LI   
Sbjct: 1012 SLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRIGQKRQVFVYKLIVAG 1065

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +I+E +L     K+ +   +L   +KE + 
Sbjct: 1066 SIEEKILALQEKKAILAAGVLEKTQKEKLR 1095


>gi|291455081|ref|ZP_06594471.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
 gi|291358030|gb|EFE84932.1| LOW QUALITY PROTEIN: SNF2/RAD54 family helicase [Streptomyces albus
           J1074]
          Length = 690

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    +  E     E    K+  L
Sbjct: 464 LYEAVVRESMAAIERSEGIARRGLVLKLLTSLKQICNHPAQFLKESPARLEGRSGKLALL 523

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++         +V   +      +                   + +    +  + EG
Sbjct: 524 DELLDTLLAEDCSALVFTQYVGMAKLIGAHLAARAVPAELLHGATPVAERERMVDRFQEG 583

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+L     + G GLNL    + +  +  WW+       +E     R  + G  R V V
Sbjct: 584 RTPVLVLSLKAAGTGLNLTR-ASHVFHYDRWWNPA-----VEEQATDRAYRIGQTRPVQV 637

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LI + T+++ + + L  K  + D +L + +     +
Sbjct: 638 HRLITEGTVEDRIAELLTAKRALADAVLGSGEGALTEL 675


>gi|239983251|ref|ZP_04705775.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 616

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    ++     A             Q+ N    +  E     E    K+  L
Sbjct: 390 LYEAVVRESMAAIERSEGIARRGLVLKLLTSLKQICNHPAQFLKESPARLEGRSGKLALL 449

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++         +V   +      +                   + +    +  + EG
Sbjct: 450 DELLDTLLAEDCSALVFTQYVGMAKLIGAHLAARAVPAELLHGATPVAERERMVDRFQEG 509

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+L     + G GLNL    + +  +  WW+       +E     R  + G  R V V
Sbjct: 510 RTPVLVLSLKAAGTGLNLTR-ASHVFHYDRWWNPA-----VEEQATDRAYRIGQTRPVQV 563

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LI + T+++ + + L  K  + D +L + +     +
Sbjct: 564 HRLITEGTVEDRIAELLTAKRALADAVLGSGEGALTEL 601


>gi|159028978|emb|CAO87439.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1390

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 25/213 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R     L   +  A        ++ +K  +          +    ++   K+   
Sbjct: 1171 YEALRRRALEKLSESDSTAGAKHLQVLAEIMKLRRACCHPQLVAPD---LDLAGSKLSRF 1227

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+++   N    +V   F   L              +              ++ +  G
Sbjct: 1228 AEILDELLDNQHKALVFSQFVDHLAIVRSYLDQRQIKYQYLDGSTPASDRQKQVKAFQAG 1287

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+       +E     R  + G KR V +
Sbjct: 1288 EGDVFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRIGQKRPVTI 1341

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            Y L+A++TI+E ++     K  + D LL     
Sbjct: 1342 YRLVAKDTIEEKIVDLHHHKRDLADSLLEGTDA 1374


>gi|220904807|ref|YP_002480119.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869106|gb|ACL49441.1| Non-specific serine/threonine protein kinase [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1091

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+         D       +   K  A +
Sbjct: 872  RKLRAQVLADVDQKGLAKSQMSILDALLKLRQICCHPRLLKIDIPGFTTNLPSGKFDAFK 931

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 932  DMIMEIVEGGHKVLVFSQFVQMLQIIKQWLEFSQVPFCYLDGASKDRFDQVDRFNNSPDI 991

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 992  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1045

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI QNT++E +L+    K  + + ++       +L +E + +
Sbjct: 1046 LICQNTVEEKILKLQEAKRGVAEAIIPGQDTWKSLTREDLEM 1087


>gi|308174984|ref|YP_003921689.1| SWI/SNF chromatin-remodeling complex subunit snf22 [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607848|emb|CBI44219.1| SWI/SNF chromatin-remodeling complex subunit snf22 SWI/SNF complex
           subunit snf22; ATP-dependent helicase snf22 [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/198 (40%), Positives = 120/198 (60%), Gaps = 7/198 (3%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +++L       ++ A  +A  + K LQLANGAV YDE    +++HDEK+ ALE I+
Sbjct: 256 YKQLEKDLLLPFLDGDVVADTAAVLSNKLLQLANGAV-YDENGEIQKLHDEKLNALEDIV 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           + AN  PI+V Y +  DL R+Q+ F + + LD     I +WN GKI +L AHPAS GHGL
Sbjct: 315 DAANGKPILVFYSYKHDLERIQQKFKKAKPLDSSRE-IADWNNGKIEMLLAHPASTGHGL 373

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+++V+F + W LE +Q         R  + G K +V V +L+ + T+DE V++ 
Sbjct: 374 NLQDGGHVIVWFGMTWSLELYQ-----QANARLDRQGQKHSVIVNHLVTEGTVDEDVMRA 428

Query: 184 LRTKSTIQDLLLNALKKE 201
           L  K+  Q+ L+ A+K  
Sbjct: 429 LEGKAVGQNALMEAVKAR 446


>gi|212702386|ref|ZP_03310514.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
 gi|212674185|gb|EEB34668.1| hypothetical protein DESPIG_00400 [Desulfovibrio piger ATCC 29098]
          Length = 1085

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+                 +   K  A +
Sbjct: 866  RKLRAQVLADVDEKGLAKSQMSILDALLKLRQICCHPRLLKIDLPGFSNNLPSGKFDAFK 925

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             ++ +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 926  DMVMEIVEGGHKVLVFSQFVQMLQIIRQWLEFSQIPFCYLDGASKDRFEQVDRFNNSPDI 985

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 986  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1039

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI QNT++E +L+    K  + + ++       +L +E + +
Sbjct: 1040 LICQNTVEEKILKLQEAKRGVAEAIIPGQDTWKSLTREDLEM 1081


>gi|62327356|ref|YP_224069.1| hypothetical protein BPKS7gp47 [Salmonella phage SS3e]
 gi|57472390|gb|AAW51252.1| hypothetical protein [Salmonella phage SS3e]
          Length = 474

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY         K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKEWEKVHDTKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFSKGAKGNKQMESWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|262193501|ref|YP_003264710.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262076848|gb|ACY12817.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 777

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 2   KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y   +   + D+      +G    A       +K  Q+             +     K
Sbjct: 551 ELYESIRMSAHADVRSIIRKKGLAGSAIAILDALMKLRQVCCDPRLVTVPSARRVKESAK 610

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWN 105
                 ++  ++     I+V   F S L         R                 + E+ 
Sbjct: 611 YALFFDLLSTQREQGRRILVFSQFTSMLALLSQGLEERGVAHSVLTGATANRQRAVDEFQ 670

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           EG+  +      + G GLNL    + +V +  WW+              R  + G  R V
Sbjct: 671 EGRTEVFLISLKAGGTGLNLTR-ADTVVHYDPWWNPAAQ-----AQATDRAYRIGQTRPV 724

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           FVY LI   +++E +L   + K  + D +L 
Sbjct: 725 FVYNLITAGSVEERMLALQQRKRHLADTILG 755


>gi|220910355|ref|YP_002485666.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
 gi|219866966|gb|ACL47305.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
          Length = 1403

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +++    L   +  A        ++ +K  +    A     +     +   K+
Sbjct: 1179 MAFYEALRQQAITKLSESDATAGAKHLQVLAEIMKLRRACCNARLVMPDT---PLPSAKL 1235

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEW 104
            +    ++E+  AN    +V   F   L              +         +    +  +
Sbjct: 1236 QLFGEVLEELLANQHKALVFSQFVDHLQLIRAYLEEQKITYQYLDGSTPAAERKKRVDAF 1295

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+       +E     R  + G  R 
Sbjct: 1296 QAGQGDVFLISLKAGGTGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQHRP 1349

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+A++TI+E ++   + K  + D LL+ 
Sbjct: 1350 VTIYRLVAKHTIEEKIVDLHQHKRDLADSLLDG 1382


>gi|226360588|ref|YP_002778366.1| helicase [Rhodococcus opacus B4]
 gi|226239073|dbj|BAH49421.1| putative helicase [Rhodococcus opacus B4]
          Length = 934

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 3   QYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKAL 59
            Y    RE    +          +  S      Q+ N    Y  ++H       +KI  L
Sbjct: 702 LYEALVREAMERIATSEGIGRRGSIVSLLTGLKQICNHPAQYLGQEHAALTGRSQKIGLL 761

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +I+         +V  HF +    L++              G ++      ++ +  G
Sbjct: 762 DELIDTNLAEGGRSLVFTHFATMGRLLRRHLTTRGVTCEFLHGGTSVAAREELVERFQSG 821

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +P+L     + G GLNL    + +V F  WW+       +E     R  + G    V V
Sbjct: 822 DVPVLILSLKAAGTGLNLTR-ADHVVHFDRWWNPA-----VEDQATDRAYRIGQTHPVVV 875

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + L+   TI+E +   L +K  + D +L+
Sbjct: 876 HRLVTAGTIEEHIAAMLASKRQLADSVLS 904


>gi|291455433|ref|ZP_06594823.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
 gi|291358382|gb|EFE85284.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 958

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    +                    Q+ N    Y  E++        K++ L
Sbjct: 731 LYEAVVRETLAAVAAADGMERRGLIVQLLTSLKQICNHPAQYLKEDRPRVGGRSGKVELL 790

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A +++   +      L++                 +      ++ + +G
Sbjct: 791 DELLDTILAEGAGVLLFTQYVRMGRLLERHLAARGVATQFLHGQTPIPAREEMVRRFQDG 850

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V    WW+       +E     R  + G  R V V
Sbjct: 851 EVPVFLLSLKAAGTGLNLTR-AEHVVHVDRWWNPA-----VEAQATDRAYRIGQTRPVQV 904

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + ++ + TI++ + + L  K  + D +L   +     +
Sbjct: 905 HRIVTEGTIEDRIAELLVRKQALADAVLTGGEAALTEL 942


>gi|239983620|ref|ZP_04706144.1| SNF2/RAD54 family helicase [Streptomyces albus J1074]
          Length = 956

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    +                    Q+ N    Y  E++        K++ L
Sbjct: 729 LYEAVVRETLAAVAAADGMERRGLIVQLLTSLKQICNHPAQYLKEDRPRVGGRSGKVELL 788

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A +++   +      L++                 +      ++ + +G
Sbjct: 789 DELLDTILAEGAGVLLFTQYVRMGRLLERHLAARGVATQFLHGQTPIPAREEMVRRFQDG 848

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V    WW+       +E     R  + G  R V V
Sbjct: 849 EVPVFLLSLKAAGTGLNLTR-AEHVVHVDRWWNPA-----VEAQATDRAYRIGQTRPVQV 902

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + ++ + TI++ + + L  K  + D +L   +     +
Sbjct: 903 HRIVTEGTIEDRIAELLVRKQALADAVLTGGEAALTEL 940


>gi|78356607|ref|YP_388056.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219012|gb|ABB38361.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
          Length = 1068

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + I     +     +K  Q+         D       +   K  A +
Sbjct: 849  KKLKDQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLPSGKFDAFK 908

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWNE-GKI 109
             +I         ++V   F   L  ++               T       +  +N+   I
Sbjct: 909  DMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINDMPFCYLDGTSKDRFDQVDRFNDSPDI 968

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G K  VF Y 
Sbjct: 969  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRAHRIGQKNQVFAYK 1022

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I QNT++E +L+    K  + D ++
Sbjct: 1023 MICQNTVEEKILKLQDMKRGVADAII 1048


>gi|238854134|ref|ZP_04644481.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833210|gb|EEQ25500.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 450

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ A+E +
Sbjct: 253 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQVVQIHQRKLDAIEDL 311

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P+++AY F  DLA++++ F       K    I +WN GKIPL   HPAS GHG
Sbjct: 312 VEAANGKPVLIAYWFKHDLAQIKQRFQ--VREIKTTQDINDWNAGKIPLALIHPASAGHG 369

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L+++ L W LE +QQ   R+      + G ++ V +Y+LI + TIDE ++ 
Sbjct: 370 LNLQAGGSTLIWYGLTWSLELYQQTNARLW-----RQGQQQPVVIYHLITEGTIDENIMT 424

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 425 ALKQKDKTQLALINAVKA 442


>gi|298490375|ref|YP_003720552.1| SNF2-like protein ['Nostoc azollae' 0708]
 gi|298232293|gb|ADI63429.1| SNF2-related protein ['Nostoc azollae' 0708]
          Length = 1072

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y +   E   +++            +  +K  Q+ N    Y +E    + +  K++ L
Sbjct: 836  QLYQQLVDESLVEIESAEGLQRRGMILALLIKLKQICNHPAQYLKESSLAKHNSAKLQRL 895

Query: 60   EVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE 106
            E ++E+  A     ++   F              L R         + ++    I  +  
Sbjct: 896  EEMLEEVLAEENRALIFTQFAEWGKLLKPYLEKQLGREILFLYGSTSKNQREEIIDRFQN 955

Query: 107  GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  ++     + G GLNL    N +  F  WW+       +E     R  + G  + 
Sbjct: 956  DPQGPRIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQTKN 1009

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+  +   T++E +   + +K  +   ++ A ++
Sbjct: 1010 VQVHKFVCTGTVEEKINDMIESKKQLAQQVVGAGEE 1045


>gi|253581729|ref|ZP_04858953.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
 gi|251836078|gb|EES64615.1| SNF2 domain-containing protein [Fusobacterium varium ATCC 27725]
          Length = 459

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 124/205 (60%), Gaps = 9/205 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK+Y + ++++  +L+ + I+  ++A+ + K +QLANGA+ YDE +   EVH+ KI+A  
Sbjct: 255 MKEYEELEKKMILELEDKTIDVTSAAALSNKLMQLANGAI-YDENRGIHEVHNCKIEAFM 313

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE---WNEGKIPLLFAHPA 117
            +IEK N    +V Y+F  DLARLQ+A  +     +   T+++   WN+ +I +L  HPA
Sbjct: 314 ELIEKLNGKAALVFYNFQHDLARLQEALKKTGLKVRILKTVEDQDAWNKKEIDILLTHPA 373

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +GLNLQ GGN +++F L W LE +Q         R  + G K  V V++L+ Q+T D
Sbjct: 374 SSAYGLNLQEGGNHVIWFGLNWSLELYQ-----QANKRLHRQGQKEKVIVHHLVVQDTRD 428

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E V++ L TK  +Q+ LL +LK   
Sbjct: 429 EDVIKALNTKGDVQEALLESLKVRI 453


>gi|116630100|ref|YP_815272.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095682|gb|ABJ60834.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 450

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 119/198 (60%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 253 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQVVQIHQRKLDALEDL 311

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P+++AY F  DLA++++ F       K    I +WN GKIPL   HPAS GHG
Sbjct: 312 VEAANGKPVLIAYWFKHDLAQIKQRFQ--VREIKTTQDINDWNAGKIPLALIHPASAGHG 369

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ L+++ L W LE +QQ   R+      + G ++ V +Y+LI + TIDE ++ 
Sbjct: 370 LNLQAGGSTLIWYGLTWSLELYQQTNARLW-----RQGQQQPVVIYHLITEGTIDENIMT 424

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 425 ALKQKDKTQLALINAVKA 442


>gi|309790429|ref|ZP_07684991.1| SNF2-related helicase [Oscillochloris trichoides DG6]
 gi|308227542|gb|EFO81208.1| SNF2-related helicase [Oscillochloris trichoides DG6]
          Length = 1032

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y    RE   ++     E           +   K  Q+ N   ++ ++         K+
Sbjct: 800  LYEATVREALSEIADAESEEEQTRRRGLVLAMLTKLKQICNHPAHFLKDGSQLAERSGKL 859

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
              L+ ++E+        ++   F              L +       G         ++ 
Sbjct: 860  ARLDEMLEEVVAAEDRALIFTQFAEMGTLLQAHLSQRLGQEILFLHGGTPTRSRDGMVRR 919

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +  P+      + G GLNL    + +  F  WW+       +E     R  + G  
Sbjct: 920  FQAPEGPPIFILSLKAGGVGLNLTR-ASHVFHFDRWWNPA-----VEDQATDRSFRIGQT 973

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R V V+  ++  T++E + + +  K  +   +L A + 
Sbjct: 974  RNVQVHKFVSSGTLEEKIDEMIEGKRALAAQVLGAGEA 1011


>gi|293397496|ref|ZP_06641747.1| SNF2 family DNA helicase [Serratia odorifera DSM 4582]
 gi|291419984|gb|EFE93262.1| SNF2 family DNA helicase [Serratia odorifera DSM 4582]
          Length = 1224

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 4    YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y   +++    L   G +I+     ++  +  +         +      +   K+ A   
Sbjct: 1005 YEALRQQAVERLDSGGGDIKPLQVLTEITRLRRFCCHPSLVLDN---LPLAGSKLAACLD 1061

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            II++   N    +V   F   L              +      +  +    +  +  G+ 
Sbjct: 1062 IIDELRENHHKALVFSQFVDHLTLLRTALDERGIRYQYLDGSTSPTEREKRVAAFQSGEG 1121

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L      + G GLNL    + ++    WW+       +E     R  + G +R V VY 
Sbjct: 1122 ELFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAYRIGQERPVTVYR 1175

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+ ++TI+E ++     K  + + LL
Sbjct: 1176 LVMEDTIEEQMVALHGRKRQLAEDLL 1201


>gi|282533166|gb|ADA82275.1| putative helicase [Escherichia phage K1G]
          Length = 474

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 8/209 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHDEKI 56
           + Y   + +L+ +L+   +EA N+A+KT KCLQ+A+GAVY         K W++VHD K+
Sbjct: 264 QAYIDMEEKLFAELESGEVEAANAAAKTSKCLQIASGAVYVSGPDGEATKDWEKVHDMKL 323

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC---TIQEWNEGKIPLLF 113
            ALE I+E+   AP++VAY F  +L R+ K FPQ +   K       ++ WN G+I +L 
Sbjct: 324 DALESIVEELQGAPLLVAYQFKHELERILKRFPQAQAFAKGAKGNKQMEAWNRGEIEILC 383

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            HPAS GHGLNLQ GG+ L F S  W+LE + Q++ERIG  RQ+QAG +R VF+Y+++A+
Sbjct: 384 VHPASAGHGLNLQDGGHHLAFISQGWNLEHYLQVVERIGPVRQKQAGHERPVFLYHIVAK 443

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +T+DE+V  R   K ++Q+ LLN +K+  
Sbjct: 444 DTLDEVVAARTDEKKSVQEELLNYMKRRG 472


>gi|288799809|ref|ZP_06405268.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333057|gb|EFC71536.1| SNF2 domain protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 458

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 120/205 (58%), Gaps = 10/205 (4%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y+KF+R+   +L   + E I A ++A+ + K LQ + GA+Y ++      +H +K++A
Sbjct: 256 KDYNKFERDCVLELFTEEDETITAASAAALSNKLLQFSGGAIYDEDHNTHV-IHTKKLEA 314

Query: 59  LEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           LE ++E AN  PI++ Y F  + +R ++            P TI+ WN+G+I +  AHPA
Sbjct: 315 LEDVVEAANGQPILLFYAFKHEESRIIEHFKNLRVVKLDTPETIKAWNKGEIDIAIAHPA 374

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S GHGLNLQ+GGNI+V++ L W LE +Q         R  + G  + V +Y+LI++ TID
Sbjct: 375 SVGHGLNLQHGGNIIVWYGLTWSLELYQ-----QANARLHRQGQSKPVKIYHLISEGTID 429

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
           E +++ L  K   Q+ L+ A+K   
Sbjct: 430 EEIVKALSNKDKTQNGLMQAVKARI 454


>gi|298528668|ref|ZP_07016072.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512320|gb|EFI36222.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1387

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 78/211 (36%), Gaps = 25/211 (11%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y   + +   +L+   E   A N    ++  +  Q          E     V   K+  
Sbjct: 1165 MYEAMRMQALENLEQVSEQGGARNLRILTELTRLRQFCCHPRMVVPE---SRVPGSKLDL 1221

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            L+ II +  AN    +V   F   LA +++         +              IQ + E
Sbjct: 1222 LQEIITELLANKHKALVFSQFVKHLALVRERLEAMGIEYRYLDGSTPGHVREQEIQAFQE 1281

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  L      + G GLNL    + ++    WW+       +E     R  + G +  V 
Sbjct: 1282 GRGDLFLISLKAGGLGLNLTA-ADYVIHLDPWWNPA-----VEDQATDRSHRIGQENPVT 1335

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+A+NTI+E +++    K  + D LL  
Sbjct: 1336 VYRLVAENTIEEKIVRLHAEKRDLADSLLEG 1366


>gi|71279360|ref|YP_270079.1| Snf2 family protein [Colwellia psychrerythraea 34H]
 gi|71145100|gb|AAZ25573.1| Snf2 family protein [Colwellia psychrerythraea 34H]
          Length = 1134

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 24/217 (11%)

Query: 2    KQYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y   +       +++  D +G            +K  Q+ N       E   K     
Sbjct: 907  ELYESVRLAMDSRLKDIIAD-KGLKRSQIEVLDALLKLRQVCNHPKLLKLEGAKKVNQSA 965

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEW 104
            K+  L   + +       I++   F S L+ ++               +  K    + ++
Sbjct: 966  KLDYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKRQEVVDKF 1025

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G++P+      + G GLNL    + ++ F  WW+       +E     R  + G  + 
Sbjct: 1026 QRGEVPVFLISLRAGGVGLNLTA-ADTVIHFDPWWNPA-----VENQATDRAYRIGQNKP 1079

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VFVY LI +N+I+E + +  + K+ +   LL+    +
Sbjct: 1080 VFVYKLIIENSIEEKIQKIQQNKAELAKALLSEEVSD 1116


>gi|300764700|ref|ZP_07074691.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
 gi|300514586|gb|EFK41642.1| phage-associated helicase [Listeria monocytogenes FSL N1-017]
          Length = 451

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/200 (40%), Positives = 119/200 (59%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y +F+ +L   L+   I+A N+A  + K LQ+ANGA+ YDE      +HD+K+ ALE 
Sbjct: 255 QKYDEFKADLVLQLKEATIDAANTAVLSNKLLQMANGAI-YDEFNVSHHIHDQKLDALED 313

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE  N  PI++AY F  DL R+++ F       K    I +WNEG IP+   HPAS GH
Sbjct: 314 LIEGTNGKPILIAYWFQHDLERIKERFN--VRQIKTSQDIIDWNEGSIPIAVIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ LV+F L W LE + Q   R+      + G    V ++++IA++TIDE V+
Sbjct: 372 GLNLQAGGSTLVWFGLTWSLELYLQTNARLW-----RQGQSDTVVIHHIIAKDTIDEDVM 426

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L+ K   Q  L++A+K  
Sbjct: 427 LALKRKDKTQSCLIDAVKAR 446


>gi|303327511|ref|ZP_07357952.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862451|gb|EFL85384.1| Snf2 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 1085

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 27/222 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+                 +   K  A +
Sbjct: 866  RKLRAQVLADVDQKGLAKSQMSILDALLKLRQICCHPRLLKMDLPGFSNNLPSGKFDAFK 925

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             ++ +       ++V   F   L  +++          +  G + D+     +  N   I
Sbjct: 926  DMVLEIVEGGHKVLVFSQFVQMLQIIKQWLEFSQVPFCYLDGASKDRFDQVDRFNNSPDI 985

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y 
Sbjct: 986  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSYK 1039

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            LI QNT++E +L+    K  + + ++       +L +E + +
Sbjct: 1040 LICQNTVEEKILKLQEAKRGVAEAIIPGQDTWKSLTREDLEM 1081


>gi|119510052|ref|ZP_01629192.1| SNF2-related helicase [Nodularia spumigena CCY9414]
 gi|119465239|gb|EAW46136.1| SNF2-related helicase [Nodularia spumigena CCY9414]
          Length = 1087

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +       +++            +  VK  Q+ N    Y +    +E    K++ L+
Sbjct: 852  LYQQVVEASLVEIESAEGLQRRGMILALLVKLKQICNHPAQYLKAATLQEHSSAKLQRLD 911

Query: 61   VIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
             ++          ++   F              L +       G +  +    I  +   
Sbjct: 912  EMLTVALEEGDRALIFTQFAEWGKLLKAHLQQTLGKEIFFLYGGSSKKQREEMIDRFQHD 971

Query: 108  K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                P++     + G GLNL    N +  F  WW+       +E     R  + G  R V
Sbjct: 972  PQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQTRNV 1025

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V+  +   T++E +   + +K  + + ++ A ++
Sbjct: 1026 QVHKFVCTGTLEEKIHDMIESKKQLAEQVVGAGEE 1060


>gi|76788487|ref|YP_329361.1| prophage LambdaSa04, SNF2 family helicase [Streptococcus agalactiae
           A909]
 gi|76563544|gb|ABA46128.1| prophage LambdaSa04, helicase, SNF2 family [Streptococcus
           agalactiae A909]
          Length = 458

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F+++    DL+   + A N+AS + K +Q+ANGAV Y +++    +HD+K+ ALE I
Sbjct: 256 YSQFKKDYIMADLEDTEVTAANAASLSNKLVQMANGAV-YSDDQQVVSLHDQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           IE AN  P++VAY F  DL R+++         T+ K    I+EWN+G + +   HPAS 
Sbjct: 315 IEAANGEPVLVAYWFKHDLKRIEERLAKLKVKGTVLKTEEDIREWNKGNVSVGLLHPASS 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWR----QGQQAETVVIQHIVTECTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q  LL A+K + 
Sbjct: 431 ILKVLENKDAQQARLLEAVKAQV 453


>gi|325687762|gb|EGD29783.1| SNF2 domain protein [Streptococcus sanguinis SK72]
          Length = 450

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/201 (43%), Positives = 130/201 (64%), Gaps = 7/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG + YDE +    +HD+K+ ALE
Sbjct: 249 LAVYKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANG-MIYDENRDTVLLHDQKLVALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY F  DL R+++ FP+ R   +    I+EWN+GKIPL   HPAS G
Sbjct: 308 EMVESMNGRPLLVAYWFQHDLKRIKERFPEARV-IQSNQDIEEWNKGKIPLGLIHPASSG 366

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I +NTIDE V
Sbjct: 367 HGLNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKNTIDEQV 421

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++RL+ K   Q  L++A+K E
Sbjct: 422 MKRLKEKDISQQSLIDAVKYE 442


>gi|158341292|ref|YP_001522344.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
 gi|158311533|gb|ABW33144.1| helicase, SNF2 family [Acaryochloris marina MBIC11017]
          Length = 1406

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +++    L   +  +        ++ ++  +          E     +   K++  
Sbjct: 1187 YEALRQDALAKLNESDAASGPKHIQVLAELMRLRRACCNPRLVLPETD---LPSAKLQLF 1243

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEG 107
              ++ +   N    +V   F   L  +++   + +   +              +  +  G
Sbjct: 1244 AEVLNELLDNKHKALVFSQFVDHLEIIRRYLDEQQIQYQYLDGSTPAKNRHKRVDAFQAG 1303

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1304 EGEIFLISLKAGGTGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQQRPVTI 1357

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A+ TI+E +++    K  + D LL  
Sbjct: 1358 YRLVAKGTIEEKIVELHNQKRDLADSLLEG 1387


>gi|289768102|ref|ZP_06527480.1| helicase [Streptomyces lividans TK24]
 gi|289698301|gb|EFD65730.1| helicase [Streptomyces lividans TK24]
          Length = 974

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            Y    RE    ++                   Q+ +    + +E+H             
Sbjct: 743 LYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARSG 802

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++        ++V   +      +                G  + +    + 
Sbjct: 803 KLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMVD 862

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 863 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 916

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + V V+ LI + T+++ + + L++K  + D +L + +     +
Sbjct: 917 QPVQVHRLITEGTVEDRIAEMLQSKRALADAILGSGESALTEL 959


>gi|256784218|ref|ZP_05522649.1| helicase [Streptomyces lividans TK24]
          Length = 979

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            Y    RE    ++                   Q+ +    + +E+H             
Sbjct: 748 LYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARSG 807

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++        ++V   +      +                G  + +    + 
Sbjct: 808 KLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMVD 867

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 868 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 921

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + V V+ LI + T+++ + + L++K  + D +L + +     +
Sbjct: 922 QPVQVHRLITEGTVEDRIAEMLQSKRALADAILGSGESALTEL 964


>gi|139438973|ref|ZP_01772433.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
 gi|133775684|gb|EBA39504.1| Hypothetical protein COLAER_01439 [Collinsella aerofaciens ATCC
            25986]
          Length = 1173

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 32/216 (14%)

Query: 2    KQY--------HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
            K Y         + Q     + +    +     ++  K  Q+      + E+        
Sbjct: 948  KLYLANQDRIAQQVQHREVSEFKK---DKLKVLAELTKLRQICCDPHLHYEDYKA---GS 1001

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
             K+ A   ++         I++   F   L  + K   +            + +     +
Sbjct: 1002 AKLDACMELVHGALDGGHHILLFSQFTGMLDIIGKRLAKEDIGFLKLTGASSKESRAKMV 1061

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             ++  G++P+      + G GLNL    ++++ +  WW++             R  + G 
Sbjct: 1062 AQFQAGEVPVFLISLKAGGVGLNLTA-ADVVIHYDPWWNVAAQD-----QATDRAHRIGQ 1115

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  V VY LIA++TI+E +++   +K  + + +L  
Sbjct: 1116 QHTVTVYKLIAKDTIEERIMRMQESKRDLVNSVLGG 1151


>gi|21224583|ref|NP_630362.1| helicase [Streptomyces coelicolor A3(2)]
 gi|6273667|emb|CAB60181.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 977

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            Y    RE    ++                   Q+ +    + +E+H             
Sbjct: 746 LYEAVVRESMLAIEEAEGIGRRGLVLKLLTSLKQICDHPALFLKEEHPPGGTDRMTARSG 805

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++        ++V   +      +                G  + +    + 
Sbjct: 806 KLALLDELLDTVLAEDGSVLVFTQYVGMARLITSHLAARAVPVDLLHGGTPVPERERMVD 865

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 866 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 919

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + V V+ LI + T+++ + + L++K  + D +L + +     +
Sbjct: 920 QPVQVHRLITEGTVEDRIAEMLQSKRALADAILGSGESALTEL 962


>gi|260161780|emb|CAZ39324.1| phage related DNA helicase [Streptococcus suis]
 gi|313575362|emb|CBR26891.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 458

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F++E    +L G  + A N+AS T K +QL+NGAV Y ++     +H++K+ ALE I
Sbjct: 256 YIQFKKEYVLSELDGLEVTAANAASLTNKLVQLSNGAV-YSDDHTVVSLHEQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +E AN  PI+VAY F  DLAR+     +      + K    I+EWN+G +P+   HPA  
Sbjct: 315 LESANGEPILVAYWFKHDLARIMSRLEKLKLKSQVLKTEEDIREWNKGNVPVGLLHPAGA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWR----QGQESETVVIQHIVTEGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q+ L+ A+K + 
Sbjct: 431 ILKALENKDAQQERLIAAVKAQI 453


>gi|307323253|ref|ZP_07602463.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
 gi|306890742|gb|EFN21718.1| SNF2-related protein [Streptomyces violaceusniger Tu 4113]
          Length = 978

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 83/218 (38%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE+  ++ G    +             Q+ N    Y  E++        K++ L
Sbjct: 751 LYEAVVREILAEISGTGGLVRRGLIVKLLTGLKQICNHPAQYLKEDRPVIPGRSGKLELL 810

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      L+               G  + +    ++ + +G
Sbjct: 811 DELLDTILAEGASVLVFTQYVQMARILEGHLAARGVPTQLLHGGTPVARREEMVRSFQDG 870

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL   G+ +V +  WW+       +E     R  + G  + V V
Sbjct: 871 EVPVFLLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEAQATDRAYRIGQTQPVQV 924

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ T+++ +   L  K  + D +L + +     +
Sbjct: 925 HRIIAEGTVEDRIAAMLTRKQELADAVLGSGEGALTEL 962


>gi|146292471|ref|YP_001182895.1| SNF2-like protein [Shewanella putrefaciens CN-32]
 gi|145564161|gb|ABP75096.1| SNF2-related protein [Shewanella putrefaciens CN-32]
          Length = 1073

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K  ++ K+
Sbjct: 851  LYESIRLVMEKKLRDLFANQGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       +++   F S L  ++                       I  + +
Sbjct: 911  DWLKQNLPEMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQIDRFQD 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQNLADSILEG 1055


>gi|320353039|ref|YP_004194378.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320121541|gb|ADW17087.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 1447

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +++    +  E            ++  +  Q                +   K+   
Sbjct: 1228 YEALRQQALERIDAEQGTNGQKPMRILAEITRLRQACCHPRLLQ---ADSTIAGAKLALF 1284

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              ++ +   N    +V   F   LA             +         +    ++ +  G
Sbjct: 1285 GEVVAELLDNGHKALVFSQFVGHLALIREYLDARAIPYRYLDGSTPPKERQREVEAFQAG 1344

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  L      + G GLNL    + ++    WW+       +E     R  + G +R V V
Sbjct: 1345 QGDLFLISLKAGGLGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQQRPVTV 1398

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+AQ TI+E +++    K  + D LL+A
Sbjct: 1399 YRLVAQQTIEEKIVRLHAEKRDLADSLLDA 1428


>gi|319425773|gb|ADV53847.1| SNF2-related protein [Shewanella putrefaciens 200]
          Length = 1073

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K  ++ K+
Sbjct: 851  LYESIRLVMEKKLRDLFANQGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       +++   F S L  ++                       I  + +
Sbjct: 911  DWLKQNLPEMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQIDRFQD 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQNLADSILEG 1055


>gi|83591548|ref|YP_425300.1| SNF2 helicase-like protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574462|gb|ABC21013.1| SNF2 helicase-related protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1209

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 70/212 (33%), Gaps = 25/212 (11%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       RE+  + +G      +  +   +  Q+             K     K
Sbjct: 985  LYEAVRLAAHKAIREVLAE-KGLARGRIHILAALTRLRQVCCDPRLVK-GGPRKPPPSAK 1042

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN 105
            +  LE ++          +V   F S LA ++                       +  + 
Sbjct: 1043 LDRLEEMLRDLVDEGRRTLVFSAFPSMLALVEERLAAASIPWVSLTGETRDRDTPVTRFQ 1102

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G +P+      + G GL L    + ++ +  WW+       +E     R  + G  + V
Sbjct: 1103 SGAVPVFLISLKAGGTGLTLTA-ADTVIHYDPWWNPA-----VEAQATDRAHRIGQDKPV 1156

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            FV+ L+A  T++E +L     K  + D L + 
Sbjct: 1157 FVHKLVAAGTVEERILALQDRKRGLLDGLFDG 1188


>gi|298346380|ref|YP_003719067.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236441|gb|ADI67573.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 452

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 7/199 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   E+  +L  E I+A N+A    K  QLA+GA+ Y E      VH  K+ ALE 
Sbjct: 254 KVYDRLAAEMVVELGDEVIDAANAAVLAGKLTQLASGAI-YTEAGDSIVVHGRKLDALED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DLAR+++ FPQ R   K    I+ WN G+IPL   HPAS GH
Sbjct: 313 LIEAANGNPVLVAYWWQHDLARIRERFPQAR-QLKTSADIEAWNGGEIPLGLIHPASAGH 371

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+IL+++SL W LE HQQ   R+      + G  + V + ++  +++ID+ +L
Sbjct: 372 GLNLQQGGSILIWYSLTWSLELHQQTNARL-----YRQGQTKPVTITHIATKDSIDQQIL 426

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + L +K+  Q  L++A+ +
Sbjct: 427 RALESKNMTQSALIDAVAQ 445


>gi|328887305|emb|CCA60544.1| Helicase, SNF2 or RAD54 family [Streptomyces venezuelae ATCC 10712]
          Length = 1036

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 21/209 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    RE    +      A             Q+ N    Y  EE+   E    K++ L
Sbjct: 806  LYEAVVRETLAAIADAEGMARRGLVVKLLTGLKQICNHPAQYLKEERPRIEGRSGKLELL 865

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
            + +++      A  +V   +      L+               G  + +    +  +  G
Sbjct: 866  DELLDTILAEGACTLVFTQYVGMARLLKTHLAARGVRTQFLHGGTPVAEREAMVARFQSG 925

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            ++P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 926  EVPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQDRPVQV 979

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + LIA+ TI++ +   L  K  + D +L 
Sbjct: 980  HRLIAEGTIEDRIATMLDRKRELADTVLG 1008


>gi|296122550|ref|YP_003630328.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296014890|gb|ADG68129.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 1112

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 2    KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y + +      L G            +     ++  Q +       +    +     K
Sbjct: 890  RLYDELRDHFRDSLLGLIESQGLAKTKMHVLEALLRLRQASCHPALLHKSSDEEG--SAK 947

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEW 104
            +  L   +E+        +V   F S LA ++K          +  G+T D+  C  +  
Sbjct: 948  LDVLIPHLEELVGEGHKTLVFSQFTSMLAIVRKHLDRAGITYEYLDGQTRDRKECVERFQ 1007

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+    +      + G GLNL    + +     WW+       +E   + R  + G  R 
Sbjct: 1008 NDKDCGVFLISLKAGGLGLNLTA-ADYVFILDPWWNPA-----VETQAIDRAHRVGQTRQ 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            VF Y LI +NT++E + +  + K  + D +L        ++
Sbjct: 1062 VFAYRLICKNTVEEKIAELQKQKRELADAILEQDNSVMTNL 1102


>gi|256789242|ref|ZP_05527673.1| helicase [Streptomyces lividans TK24]
          Length = 887

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  E++        K++ L
Sbjct: 660 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 719

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 720 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 779

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 780 DAPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 833

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 834 HRLIAEGTIEDRIAALLNCKRELADAVLGSGEAALTEL 871


>gi|289773131|ref|ZP_06532509.1| helicase [Streptomyces lividans TK24]
 gi|289703330|gb|EFD70759.1| helicase [Streptomyces lividans TK24]
          Length = 988

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE   ++ G +  A             Q+ N    +  E++        K++ L
Sbjct: 761 LYEAVVREALAEIAGADHMARRGMIVKLLTNLKQICNHPAQFLKEDRPKITGRSGKLELL 820

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++   +  A ++V   +      L++              G ++      ++ + +G
Sbjct: 821 DELLDTILSEQASVLVFTQYVQMARLLEQHLAARGVSSLFLHGGTSVTARESLVRRFQDG 880

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL      +V +  WW+       +E     R  + G  R V V
Sbjct: 881 DAPVFLLSLKAAGTGLNLTR-AEHVVHYDRWWNPA-----VEAQATDRAYRIGQTRPVQV 934

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ TI++ +   L  K  + D +L + +     +
Sbjct: 935 HRLIAEGTIEDRIAALLNCKRELADAVLGSGEAALTEL 972


>gi|17232392|ref|NP_488940.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
 gi|17134038|dbj|BAB76599.1| SWI/SNF family helicase [Nostoc sp. PCC 7120]
          Length = 869

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y   +R+    L   N EA N      ++ +K  +          +    E+   K++  
Sbjct: 650 YEALRRQAISKLSDSNAEAGNKHLQVLAEIMKLRRACCNPSLVMPDT---ELSSSKLQLF 706

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
             ++ +   N    +V   F   L  ++    +            ++ +    +  +  G
Sbjct: 707 GEVLGELLENRHKALVFSQFVDHLHIIRNYLDKQGINYQYLDGSTSVSERKKRVDAFQAG 766

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 767 NGDVFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQQRPVTI 820

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+A++TI+E +++    K  + D LL  
Sbjct: 821 YRLVAKDTIEEKIVELHHHKRDLADSLLEG 850


>gi|302533833|ref|ZP_07286175.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
 gi|302442728|gb|EFL14544.1| SNF2/RAD54 family helicase [Streptomyces sp. C]
          Length = 645

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 32/229 (13%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVH------- 52
            Y     E    ++G                  Q+ N    +  E    + V        
Sbjct: 408 LYQAAVDEAMAVIEGSEGMERRGMIMKLLASLKQICNHPAQFLKEYGLREGVPAGAAAPR 467

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDK 96
                 K+  L+ +++        ++V   + +    L++              G  + +
Sbjct: 468 LAHRSGKLALLDELLDTILAEDGSVLVFTQYVTMARILERHLASRGIPSQLLHGGTPVPR 527

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +  G++P+      + G GLNL   G+ ++ +  WW+       +E     R 
Sbjct: 528 REELVDRFQSGEVPVFLLSLKAAGTGLNLTRAGH-VIHYDRWWNPA-----VEEQATDRA 581

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G  + V V+ +IA+ T+++ + + L  K  + D +L + +     +
Sbjct: 582 YRIGQTQPVQVHRIIAEGTVEDRIAELLEAKRALADAVLGSGEAALTEL 630


>gi|317122409|ref|YP_004102412.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
 gi|315592389|gb|ADU51685.1| SNF2-related protein [Thermaerobacter marianensis DSM 12885]
          Length = 1191

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 23/210 (10%)

Query: 2    KQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +     +  +  ++    I           ++  Q         +   ++     K
Sbjct: 967  KLYRELLAAYRARVLAEVDRAGIARSRMTILEALLRLRQACCHPALL-DLPGYRNAGSAK 1025

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------PCTIQEWN 105
            ++A   ++         ++V   F S L  LQ+   +     +            ++ + 
Sbjct: 1026 LEAFRELVHHVAGGGGKVLVFSQFTSMLDILQRELDRLGLGWERLDGRVRNREERVRRFQ 1085

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG +P+      + G GLNL    + ++ +  WW+       +E     R  + G  R V
Sbjct: 1086 EGDVPVFLISLKAGGTGLNLTA-ASYVIHYDPWWNPA-----VEEQATGRAHRIGQDRPV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F Y LI + T++E +LQ    K  +   LL
Sbjct: 1140 FSYKLITRGTVEEKILQLQEQKRALAGALL 1169


>gi|120599532|ref|YP_964106.1| SNF2-like protein [Shewanella sp. W3-18-1]
 gi|120559625|gb|ABM25552.1| SNF2-related protein [Shewanella sp. W3-18-1]
          Length = 1073

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K  ++ K+
Sbjct: 851  LYESIRLVMEKKLRDLFANQGVNSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       +++   F S L  ++                       I  + +
Sbjct: 911  DWLKQNLPEMVQEGRKVLIFSQFTSMLTLIEAELQSLNIDYSKLTGQTRWRQAQIDRFQD 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQNLADSILEG 1055


>gi|162451262|ref|YP_001613629.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
 gi|161161844|emb|CAN93149.1| hypothetical protein sce2990 [Sorangium cellulosum 'So ce 56']
          Length = 1141

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3    QYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y +  RE+   + GE              +   +  Q A         + + +    K+
Sbjct: 916  LYLQVAREVRAQVLGEVERVGLAKSQLQILAGLTRLRQAACDPRLLGLPREFGDDDSGKL 975

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWN 105
             A+  +I         ++V   F   L  ++           +  G T D+     +  N
Sbjct: 976  VAVRELIANAVEGGHKVLVFSQFVMMLRLIEKAMKEDGVAYEYLDGSTKDRAERVERFQN 1035

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +P+      + G GLNL    + ++ F  WW+    Q         R  + G  + V
Sbjct: 1036 DPSVPVFLISLKAGGTGLNLTA-ADTVIHFDPWWNPAVEQ-----QATDRAHRIGQTKVV 1089

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              Y LIA+ TI+E +L     K  +   +L+ 
Sbjct: 1090 TAYRLIAEGTIEEKILLLKDKKRQLVASVLSE 1121


>gi|317484825|ref|ZP_07943719.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923919|gb|EFV45111.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1073

 Score =  134 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 28/223 (12%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
             K + ++  D++ + +     +     +K  Q+                  +   K +A 
Sbjct: 853  RKLRDQVLADVESKGMAKSQMSILDALLKLRQICCHPRLLKVDMPGFSTGSLPSGKFEAF 912

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGK 108
            + +I         ++V   F   L  ++           +  G + D+     +  N  +
Sbjct: 913  KDMIFDVVEGGHKVLVFSQFVQMLQIIRGWLQLTDIPFCYLDGTSKDRLDQVDRFNNSPE 972

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G G+NL    + ++ +  WW+       +E     R  + G  R VF Y
Sbjct: 973  IPIFLISLKAGGTGINLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSY 1026

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
             LI QNT++E +L+    K  + + ++       +L KE + +
Sbjct: 1027 KLICQNTVEEKILKLQEMKRGVAEAVIPGQDTWKSLTKEDLEM 1069


>gi|300909415|ref|ZP_07126876.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893280|gb|EFK86639.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 254 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQIVQIHQRKLDALEDL 312

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  DL +++          K P  IQ+WN GKIPL   HPAS GHG
Sbjct: 313 VEAANGKPVLVAYWFKHDLIQIK--SRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHG 370

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L 
Sbjct: 371 LNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILA 425

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 426 ALKRKDKTQLALINAVKA 443


>gi|226943915|ref|YP_002798988.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
 gi|226718842|gb|ACO78013.1| DEAD box and SNF-like helicase domain-containing protein [Azotobacter
            vinelandii DJ]
          Length = 1357

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y   +++    +     E  ++    ++  +  +          +     +   K+ A 
Sbjct: 1138 LYEAMRQQALESISQSGEEGSQSLRVLTEITRLRRFCCHPSLVLPDSD---LPGSKLAAF 1194

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
              I+E+   +    +V   F   L+ ++K   +               +    ++ +  G
Sbjct: 1195 AEIVEELLDSRHKALVFSQFVDHLSIVRKWLEERGIRYQYLDGATPAKERMARVEAFQGG 1254

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1255 DGDIFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRMGQQRPVTI 1308

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A+NTI+E +L     K  + D LL   +
Sbjct: 1309 YRLVAENTIEERILALHGQKRDLADSLLEGGE 1340


>gi|298528450|ref|ZP_07015854.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512102|gb|EFI36004.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1068

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++   +  + I A   +     +K  Q+         +       +   K +A +
Sbjct: 849  KKLKEQVLQRVDEKGISASQMSILDALLKLRQICCHPRLLRLNMPGLNNNIPSGKFEAFK 908

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
             +      +   ++V   F   L  ++              G + D+        N   I
Sbjct: 909  DLTTNIIEDGHKVLVFSQFVQMLHIIRSWLNMNEIPHAYLDGSSKDRLEQVDLFNNNPDI 968

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G  + VF Y 
Sbjct: 969  PVFLISLKAGGTGLNLTA-ADYVIHYDPWWNPA-----VENQATDRTHRIGQTKQVFSYK 1022

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I +NT++E +L+    K  + + ++
Sbjct: 1023 MICENTVEEKILKLQEQKKGVAEAVI 1048


>gi|308535304|ref|YP_002139277.2| helicase [Geobacter bemidjiensis Bem]
 gi|308052649|gb|ACH39481.2| helicase, putative [Geobacter bemidjiensis Bem]
          Length = 1386

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L      +G+        ++ ++  +          +     +   K+
Sbjct: 1165 LYEAIRKSALDNLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDT---PIPSTKL 1221

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEW 104
             A   I+E+   N    +V   F   L              +         +    +  +
Sbjct: 1222 AAFGEIVEELRENRHKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKKRVDAF 1281

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   L      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1282 QSGSGDLFLISLKAGGVGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQQRP 1335

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+ + TI+E ++   + K  + D LL+ 
Sbjct: 1336 VTIYRLVTRGTIEEKIVGLHQQKRGLADSLLDE 1368


>gi|94271432|ref|ZP_01291955.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93450447|gb|EAT01631.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 940

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 21/208 (10%)

Query: 3   QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y   +R+     + Q E        S  +K  +          E       H+   K +
Sbjct: 724 LYEALRRQALRNLEQQDEQRAPLKILSAIMKLRRACCHPRLVLPESDLPCAKHELFSKVV 783

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKI 109
             ++   N   I+V   F   L  +++         +              ++++  G  
Sbjct: 784 SELL--ENGHRILVFSQFVDHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK 841

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L      + G GLNL  G + ++    WW+    Q         R  + G  R V VY 
Sbjct: 842 DLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQ-----QASDRAHRIGQDRPVTVYR 895

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           LI  NTI+E +L   + K  +   LL+ 
Sbjct: 896 LITSNTIEEKILSLHQRKRNLAGDLLDG 923


>gi|302879469|ref|YP_003848033.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
 gi|302582258|gb|ADL56269.1| SNF2-related protein [Gallionella capsiferriformans ES-2]
          Length = 1100

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 17/203 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +  RE   + +G            +K  Q+             K     K+  L  ++ 
Sbjct: 879  DQRVREEIAE-KGFARSHIIILDALLKLRQVCCDPRLLKLTSAKKVKEHAKLDLLMEMLP 937

Query: 65   K--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +  +    I+V   F S L  ++                       ++++ +G++P+   
Sbjct: 938  ELVSEGRRILVFSQFTSMLELIEGELTKEKLTYVKLTGDTQNREEVVRQFQDGEVPIFLI 997

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY L+   
Sbjct: 998  SLKAGGVGLNLTS-ADTVIHYDPWWNPA-----VENQATDRAHRLGQTKNVFVYKLVVAG 1051

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +I+E +L     K+ +   +L+ 
Sbjct: 1052 SIEEKILALQEKKAELAAGILSE 1074


>gi|94264348|ref|ZP_01288140.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93455242|gb|EAT05455.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 1285

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 21/208 (10%)

Query: 3    QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y   +R+     + Q E        S  +K  +          E       H+   K +
Sbjct: 1069 LYEALRRQALRNLEQQDEQRAPLKILSAIMKLRRACCHPRLVLPESNLPCAKHELFSKVV 1128

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKI 109
              ++   N   I+V   F   L  +++         +              ++++  G  
Sbjct: 1129 SELL--ENGHRILVFSQFVDHLTLIRQLLDNQGIGYQYLDGSTPPAVRQRRVEDFQRGGK 1186

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L      + G GLNL  G + ++    WW+    Q         R  + G  R V VY 
Sbjct: 1187 DLFLISLRAGGLGLNLT-GADYVIHLDPWWNPAVEQ-----QASDRAHRIGQDRPVTVYR 1240

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI  NTI+E +L   + K  +   LL+ 
Sbjct: 1241 LITSNTIEEKILSLHQRKRNLAGDLLDG 1268


>gi|304310231|ref|YP_003809829.1| predicted helicase [gamma proteobacterium HdN1]
 gi|301795964|emb|CBL44165.1| predicted helicase [gamma proteobacterium HdN1]
          Length = 990

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 23/212 (10%)

Query: 4   YHKF----QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y       QRE+       G      +     ++  QL          +  K +   K+ 
Sbjct: 751 YDALHALTQREITDLLLADGHETTRISILDALLRLRQLCCDPRLL-PLEDAKSLPSAKLD 809

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
            L V++E+       I+V   F S L         R                 ++ +   
Sbjct: 810 HLLVMLEELVEEGRRILVFSQFTSMLALIREALQQRKIPHLLLTGATQNRQALVERFQAE 869

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+      + G GLNL    + ++ F  WW+        E     R  + G  + VFV
Sbjct: 870 NEPIFLISLKAGGVGLNLTA-ADTVIHFDPWWNPAA-----EEQATDRAYRIGQDKPVFV 923

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y LI + TI+E ++     K  +QD +  A +
Sbjct: 924 YKLICEGTIEEKIVLLQERKRALQDAITGAAE 955


>gi|294812014|ref|ZP_06770657.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326440261|ref|ZP_08214995.1| helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294324613|gb|EFG06256.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 986

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 36/227 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY----------------DE 44
            Y    RE    ++G    A             Q+ N    +                  
Sbjct: 745 LYEAAVREAMAAIEGAEGMARRGMVMKLLTDLKQICNHPAQFLKEPGRTGPGHRGSPGRG 804

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGR 92
                     K+  L+ ++E        +++   + +    L +              G 
Sbjct: 805 PGTRLAGRSGKLALLDELLETILAEEGAVLIFTQYVTMARLLLEHLSARSVPAQLLHGGT 864

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +    +  +  G+IP+      + G GLNL   G+ ++ +  WW+       +E   
Sbjct: 865 PVAERQRMVDRFQSGEIPVFVLSLKAAGTGLNLTRAGH-VIHYDRWWNPA-----VEEQA 918

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  R V V+ LI + T+++ +   L  K  + D +L + +
Sbjct: 919 TDRAYRIGQTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVLGSGE 965


>gi|254391562|ref|ZP_05006762.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197705249|gb|EDY51061.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 754

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 36/227 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY----------------DE 44
            Y    RE    ++G    A             Q+ N    +                  
Sbjct: 513 LYEAAVREAMAAIEGAEGMARRGMVMKLLTDLKQICNHPAQFLKEPGRTGPGHRGSPGRG 572

Query: 45  EKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGR 92
                     K+  L+ ++E        +++   + +    L +              G 
Sbjct: 573 PGTRLAGRSGKLALLDELLETILAEEGAVLIFTQYVTMARLLLEHLSARSVPAQLLHGGT 632

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +    +  +  G+IP+      + G GLNL   G+ ++ +  WW+       +E   
Sbjct: 633 PVAERQRMVDRFQSGEIPVFVLSLKAAGTGLNLTRAGH-VIHYDRWWNPA-----VEEQA 686

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  R V V+ LI + T+++ +   L  K  + D +L + +
Sbjct: 687 TDRAYRIGQTRPVQVHRLITEGTVEDRIAGMLAAKRALADAVLGSGE 733


>gi|225593133|gb|ACN96051.1| SNF2-related helicase [Fischerella sp. MV11]
          Length = 828

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 76/217 (35%), Gaps = 24/217 (11%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKA 58
           + Y K   E   +++            +  VK  Q+ N    Y ++    E H   K+  
Sbjct: 591 ELYQKVVEESLAEIETAEGMQRRGMILALLVKLKQVCNHPAQYLKKTTLSEPHLSGKLLR 650

Query: 59  LEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L+ ++E+  +     ++   F              L R         +  +    I  + 
Sbjct: 651 LQEMLEEVLSEGDRALIFTQFAEWGKLLKPYLEQKLGREIFFLYGSTSKKQREEMIDRFQ 710

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                 P++     + G GLNL    N +  F  WW+       +E     R  + G  R
Sbjct: 711 HDPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQTR 764

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+  +   T++E +   + +K  + + ++ A ++
Sbjct: 765 NVQVHKFVCTGTLEEKIHDMIESKKQLAEQVVGAGEE 801


>gi|253700367|ref|YP_003021556.1| SNF2-related protein [Geobacter sp. M21]
 gi|251775217|gb|ACT17798.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1386

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L      +G+        ++ ++  +          +     +   K+
Sbjct: 1165 LYEAIRKSALDNLAGVGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDT---PIPSTKL 1221

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEW 104
             A   I+E+   N    +V   F   L              +         +    +  +
Sbjct: 1222 AAFGEIVEELRENRHKALVFSQFVGHLELIRQYVEKNGIPYQYLDGSTPPQERKRRVDAF 1281

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   L      + G GLNL    + ++    WW+       +E     R  + G KR 
Sbjct: 1282 QSGSGDLFLISLKAGGVGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQKRP 1335

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+ + TI+E ++   + K  + D LL+ 
Sbjct: 1336 VTIYRLVTRGTIEEKIVGLHQQKRGLADSLLDE 1368


>gi|259502599|ref|ZP_05745501.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
 gi|259169414|gb|EEW53909.1| SNF2 domain protein [Lactobacillus antri DSM 16041]
          Length = 451

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 254 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQIVQIHQRKLDALEDL 312

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           IE AN  P++VAY F  DL++++          K    IQ+WN G IPL   HPAS GHG
Sbjct: 313 IEAANGKPVLVAYWFKHDLSQIK--QRFTAREIKTVKDIQDWNAGNIPLALIHPASAGHG 370

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L 
Sbjct: 371 LNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQTVVIHHIITEGTIDENILA 425

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 426 ALKRKDKTQLALINAVKA 443


>gi|262199410|ref|YP_003270619.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262082757|gb|ACY18726.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 1019

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     E    ++            S  +   Q+ N    Y  E         K++ + 
Sbjct: 750 LYQAVVTEALRRIESLDGIERRGRVLSLLMGLKQICNHPAQYLGEAGPLRRRSGKLERVT 809

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            ++E+A   +   +V   F     RL   F             G         ++ + E 
Sbjct: 810 EMLEEALAGSDKALVFTQFREMGERLVAHFEDRLGVEVAFLHGGTRRSARDEMVRRFQEQ 869

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    + +  F  WW+       +E     R  + G    V
Sbjct: 870 PNGPRVFVLSVKAGGVGLNLTA-ASHVFHFDRWWNPA-----VEDQATDRAYRIGQTHIV 923

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VY  +   T++E + + L  K  +   +++A ++
Sbjct: 924 QVYKFLCAGTLEEKIDRMLTKKRELASQVVSAGEQ 958


>gi|238018846|ref|ZP_04599272.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
 gi|237864612|gb|EEP65902.1| hypothetical protein VEIDISOL_00706 [Veillonella dispar ATCC 17748]
          Length = 428

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 8/199 (4%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y + +RE    L   +++ A N+A+   K LQLANG   Y+++     VH+EKI+ L+
Sbjct: 229 ELYKQMEREHVLSLASDDDVSALNAAALAGKLLQLANG-SIYNDDGEIVVVHNEKIERLK 287

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E     P++V Y+F  DL +  K         K    + +WN+G I +L AHPAS G
Sbjct: 288 ELVETNEGKPMLVFYNFKHDL-QSIKEAFPKAVELKTDDDVAKWNKGNIQMLLAHPASAG 346

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GLNLQ GGNI+V++ L W LE++Q         R  + G  + V +++L+ + T+DE V
Sbjct: 347 YGLNLQAGGNIIVWYGLTWSLEQYQ-----QANARLHRQGQTQPVIIHHLVTKGTMDEQV 401

Query: 181 LQRLRTKSTIQDLLLNALK 199
           ++ L  K   QD LL A+K
Sbjct: 402 MKALERKEAGQDALLEAIK 420


>gi|297583090|ref|YP_003698870.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141547|gb|ADH98304.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 458

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/197 (39%), Positives = 123/197 (62%), Gaps = 8/197 (4%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +R+L   ++GE+I A N+A+ + K LQ+ANGAV YD++     +H+ K+ ALE ++E
Sbjct: 257 EAIKRDLIITVEGEDITASNAAALSGKLLQMANGAV-YDDQGQPIAIHERKLDALEDMVE 315

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            AN  P+++AY F  DL R+Q       T+  +  +IQ+WNEG+I +   HPAS GHGLN
Sbjct: 316 AANGKPVLIAYWFKHDLDRIQ--AWIEATVLSNAASIQQWNEGRIQVGLIHPASAGHGLN 373

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ+GG+ L++F L W LE +QQ   R+      + G   +V +++LI + T+DE V++ L
Sbjct: 374 LQFGGSTLIWFGLTWSLELYQQTNARL-----YRQGQTESVAIHHLIGKGTLDERVMKAL 428

Query: 185 RTKSTIQDLLLNALKKE 201
           + K   Q   ++A+K E
Sbjct: 429 KKKDVSQTAFIDAVKAE 445


>gi|104781117|ref|YP_607615.1| SNF2 family DNA helicase [Pseudomonas entomophila L48]
 gi|95110104|emb|CAK14811.1| putative DNA helicases, SNF2 family [Pseudomonas entomophila L48]
          Length = 946

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-VHDEKIKA 58
            Y   +++   ++         +F   ++  +  +                         
Sbjct: 725 LYEALRQQAVSNVSDLAPGAGRSFQILTEITRLRRFCCHPALVTPGSTLPGSKFQAVTAI 784

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
           +E ++   N    ++   +   L+ ++  F +               +    +  +  G 
Sbjct: 785 VEELL--DNGHKALIFSQYVDHLSIVRTWFDEKGIAYQYLDGSVPAKERESRVNAFQAGA 842

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL    + ++    WW+       +E     R  + G +R V +Y
Sbjct: 843 GEVFLISLKAGGSGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAYRIGQQRPVTIY 896

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L+A+NTI+E ++     K  + D LL   +
Sbjct: 897 RLVAENTIEEQIVALHARKRDLADSLLEGGE 927


>gi|227530256|ref|ZP_03960305.1| helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227349829|gb|EEJ40120.1| helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 451

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 254 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQIVQIHQRKLDALEDL 312

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  DL +++  F            IQ+WN GKIPL   HPAS GHG
Sbjct: 313 VEAANGKPVLVAYWFKHDLIQIKSRFKVREIKTPRD--IQDWNAGKIPLALIHPASAGHG 370

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L 
Sbjct: 371 LNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILA 425

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 426 ALKRKDKTQLALINAVKA 443


>gi|262113725|emb|CAR95392.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 458

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 9/203 (4%)

Query: 4   YHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y +F++E    +L G  + A N+AS T K +QL+NGAV Y ++     +H++K+ ALE I
Sbjct: 256 YIQFKKEYVLSELDGLEVTAANAASLTSKLVQLSNGAV-YSDDHSVVALHEQKLDALEDI 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPASC 119
           +E AN  P++ AY F  DLAR+     + +   +       I+EWN+G + +   HPA  
Sbjct: 315 LESANGEPVLGAYWFKHDLARILGRLEKLKVKSRVLKTEEDIREWNKGNVSVGLLHPAGA 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ GG+ LV+F L W LE +QQ   R+      Q      V + +++ + TIDE 
Sbjct: 375 GHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWR----QGQESETVIIQHIVTEGTIDEE 430

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           +L+ L  K   Q+ L+ A+K + 
Sbjct: 431 ILKALENKDAQQERLIAAVKAQV 453


>gi|257094640|ref|YP_003168281.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047164|gb|ACV36352.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1003

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 22/214 (10%)

Query: 3   QYH----KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y         ++  ++  +             +K  Q+             K     K+
Sbjct: 777 LYETVRVAMDEKVREEIANKGFNRSQIVILDALLKLRQVCCDPRLVKARSAQKVKERAKL 836

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNE 106
             L  ++ +       I++   F S LA ++                       ++ +  
Sbjct: 837 DLLMTMLPEQVEEGRRILLFSQFTSMLALIEKELKLAGIDYVILTGDTRDREAQVRRFQA 896

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P+      + G GLNL    + ++ +  WW+        E     R  + G  + VF
Sbjct: 897 CEVPVFLISLKTGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRLGQDKPVF 950

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           VY LI   +I+E +L     K+ +   +L+  + 
Sbjct: 951 VYKLIVAGSIEEKILALQERKAELAAHILSEDRG 984


>gi|317153779|ref|YP_004121827.1| SNF2-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944030|gb|ADU63081.1| SNF2-related protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1069

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D++ + +     +     +K  Q+         D       +   K  A +
Sbjct: 850  KKLKDQVLRDVEEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             ++         ++V   F   L  ++           +  G + D+     +  +   I
Sbjct: 910  DLVIDIIEGGHKVLVFSQFVRMLHVIRSWLQIREIPFAYLDGSSKDRFEQVDRFNDNPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I QNT++E +L+    K  + + ++
Sbjct: 1024 MICQNTVEERILKLQEQKKDVAESII 1049


>gi|320354706|ref|YP_004196045.1| SNF2-like protein [Desulfobulbus propionicus DSM 2032]
 gi|320123208|gb|ADW18754.1| SNF2-related protein [Desulfobulbus propionicus DSM 2032]
          Length = 1363

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 78/212 (36%), Gaps = 24/212 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            ++ Y   +++   +++G + +        ++ ++  +        +++    ++   K++
Sbjct: 1142 LQFYEALRQQAIENIEGSSEKTGRHLRILAEIMRLRRACCNPRLINDQ---VDIPSTKLQ 1198

Query: 58   ALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
                 +E+        ++   F            D     K         +    ++ + 
Sbjct: 1199 VFAETVEELLGGGHKALIFSQFTGHLALIRDFLDDRGISYKYLDGTTPAKERQQQVERFQ 1258

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  L      + G GLNL    + ++    WW+       +E     R  + G KR V
Sbjct: 1259 AGEGDLFLISLKAGGLGLNLTA-ADYVIHMDPWWNPA-----VEDQAADRAYRIGQKRPV 1312

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+  NTI+E +++  + K  + + LL  
Sbjct: 1313 TVYRLVTANTIEEKIVRLHQEKRDLANSLLEG 1344


>gi|325110937|ref|YP_004272005.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
 gi|324971205|gb|ADY61983.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
          Length = 1120

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 2    KQYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +           D QG      +     ++  Q A      D  K  +     K
Sbjct: 898  KLYDELKEYYRNSIFTLMDEQGLGKTKMHVLEALLRLRQAACHPGLLDSAKTGE--SSTK 955

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEW 104
            +  L   +E+  A     +V   F S LA ++           +  G T D+D       
Sbjct: 956  LDVLTEHLEELIAENHKTLVFSQFTSLLAIVKNHLDKANIPYVYLDGSTKDRDAVVQTFQ 1015

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  IP+      + G GLNL    + +     WW+       +E   + R  + G  R 
Sbjct: 1016 NDKDIPVFLISLKAGGLGLNLTA-ADYVFLLDPWWNPA-----VEAQAIDRAHRVGQTRN 1069

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y LIA+ TI+E + +  + K  + D +L+ 
Sbjct: 1070 VIAYRLIARGTIEEKIAELQQNKRKLADAILSE 1102


>gi|75909484|ref|YP_323780.1| SNF2-like helicase [Anabaena variabilis ATCC 29413]
 gi|75703209|gb|ABA22885.1| SNF2-related helicase [Anabaena variabilis ATCC 29413]
          Length = 1078

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 31/223 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K       +++            +  +K  Q+ N    Y +    ++    K++ LE
Sbjct: 835  LYQKVVETSLAEIESAEGLQRRGMILALLIKLKQICNHPAQYLKTNTLEQYSSGKLQRLE 894

Query: 61   VIIEKA----------NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPC 99
             ++E+            A   ++   F              L R         +  +   
Sbjct: 895  EMLEEVLAESNTYGVAGAGRALIFTQFAEWGKLLKPHLEKQLGREVFFLYGSTSKKQREE 954

Query: 100  TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +       P++     + G GLNL    N +  F  WW+       +E     R  
Sbjct: 955  MIDRFQHDPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVF 1008

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V V+  +   T++E +   + +K  + + ++ A ++
Sbjct: 1009 RIGQTRNVQVHKFVCNGTLEEKIHDMIESKKQLAEQVVGAGEE 1051


>gi|320103193|ref|YP_004178784.1| SNF2-like protein [Isosphaera pallida ATCC 43644]
 gi|319750475|gb|ADV62235.1| SNF2-related protein [Isosphaera pallida ATCC 43644]
          Length = 1912

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 21/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y + +      L G+     +       ++  Q +        ++  +     K+  L
Sbjct: 1694 KDYEELRTHYRRALLGKTKGGSHLEVLEALLRLRQASCHPGLIHPDRVDQ--PSAKLDVL 1751

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGK 108
               + +        ++   F   L  ++           +  G+T ++     +  N+  
Sbjct: 1752 LPHLAEVIEEGHKALIFSQFTRFLNIVKDRLDKEGIVYEYLDGKTHNRAERVERFQNDPN 1811

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL      +     WW+       +E   + R  + G    VF Y
Sbjct: 1812 VPVFLISLKAGGLGLNLTA-AEYVYLLDPWWNPA-----VEAQAIDRSHRIGQTSHVFAY 1865

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI ++T+++ +++  +TK  + D +L  
Sbjct: 1866 RLICRDTVEQKIIELQKTKRALADAILGG 1894


>gi|330840007|ref|YP_004414587.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
 gi|329747771|gb|AEC01128.1| SNF2-related protein [Selenomonas sputigena ATCC 35185]
          Length = 1091

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K YH    + ++E   +L+  G         +   +  Q+A     + E+         K
Sbjct: 869  KVYHAWFVQAKKEFAAELKAHGFGESRIKILAILTRLRQIACDPALFLEDYT---GGSGK 925

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
            +  LE ++  A      I++   F + L+ +                     +    +++
Sbjct: 926  LDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVRD 985

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G  PL      + G GLNL  G ++++ +  WW+       +E     R  + G K 
Sbjct: 986  FNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWNPA-----VEDQATDRAYRIGQKN 1039

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   I ++TI+E + +    K  + D ++ 
Sbjct: 1040 NVQVLKFITKDTIEEKIYELQEKKKALIDQMIQ 1072


>gi|323697573|ref|ZP_08109485.1| SNF2-related protein [Desulfovibrio sp. ND132]
 gi|323457505|gb|EGB13370.1| SNF2-related protein [Desulfovibrio desulfuricans ND132]
          Length = 1069

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             K + ++  D+  + +     +     +K  Q+         D       +   K  A +
Sbjct: 850  KKLKDQVLKDVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGVSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             ++         ++V   F   L  ++           +  G + D+     +      I
Sbjct: 910  DLVVDIIEGGHKVLVFSQFVQMLHVIRNWLQIREIPFAYLDGSSKDRFEQVDRFNENPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I QNT++E +L+    K  + + ++
Sbjct: 1024 MIRQNTVEERILKLQEQKKDVAEAII 1049


>gi|260888136|ref|ZP_05899399.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
 gi|260862165|gb|EEX76665.1| helicase, Snf2 family [Selenomonas sputigena ATCC 35185]
          Length = 1098

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K YH    + ++E   +L+  G         +   +  Q+A     + E+         K
Sbjct: 876  KVYHAWFVQAKKEFAAELKAHGFGESRIKILAILTRLRQIACDPALFLEDYT---GGSGK 932

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
            +  LE ++  A      I++   F + L+ +                     +    +++
Sbjct: 933  LDMLEEVVADAVAAGHRILIFSQFTTMLSHIAARLDVMNLSYAYLDGSTPALERMRRVRD 992

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G  PL      + G GLNL  G ++++ +  WW+       +E     R  + G K 
Sbjct: 993  FNAGAEPLFLISLKAGGTGLNLT-GADMVIHYDPWWNPA-----VEDQATDRAYRIGQKN 1046

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   I ++TI+E + +    K  + D ++ 
Sbjct: 1047 NVQVLKFITKDTIEEKIYELQEKKKALIDQMIQ 1079


>gi|313902711|ref|ZP_07836109.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467008|gb|EFR62524.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
          Length = 1191

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 2    KQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +     +  +  ++    I           ++  Q         +   ++     K
Sbjct: 967  KLYRELLAAYRARVLAEVDRAGIARSRMTILEALLRLRQACCHPALL-DLPGYRNAGSAK 1025

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------PCTIQEWN 105
            ++A   ++         ++V   F S L  LQ+   +     +            ++ + 
Sbjct: 1026 LEAFRDLVHHVAGGGGKVLVFSQFTSMLDILQRELDRLGLGWERLDGRVRNREERVRRFQ 1085

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG +P+      + G GLNL    + ++ +  WW+        E     R  + G  R V
Sbjct: 1086 EGDVPVFLISLKAGGTGLNLTA-ASYVIHYDPWWNPAA-----EEQATGRAHRIGQDRPV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            F Y LI + T++E +LQ    K  +   LL
Sbjct: 1140 FSYKLITRGTVEEKILQLQEQKRALAGALL 1169


>gi|108756872|ref|YP_635387.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108460752|gb|ABF85937.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1093

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 23/214 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     E    ++            +  +   Q+AN    Y  E         K+  + 
Sbjct: 834  LYKAVVDEELRRIEEADGMERRGRVLALLLYTKQIANHPAQYLGESGPLPGRSGKLARVV 893

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
             ++E++       +V   F              L         G         ++ + E 
Sbjct: 894  EMLEESLAAGDKALVFTQFREMGDKLVAHLSEYLGHEVLFLHGGTPRKARDEMVRRFQED 953

Query: 108  K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G GLNL    + +  +  WW+       +E     R  + G  RAV
Sbjct: 954  VHGPRVFVLSVKAGGTGLNLTA-ASHVFHYDRWWNPA-----VEDQATDRAYRIGQTRAV 1007

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V+ L+   T++E V + L  K  + + ++ A +
Sbjct: 1008 QVHKLVCAGTVEEKVDRLLEQKRQLAEKVVGAGE 1041


>gi|260201211|ref|ZP_05768702.1| helicase helZ [Mycobacterium tuberculosis T46]
 gi|289443605|ref|ZP_06433349.1| helicase helZ [Mycobacterium tuberculosis T46]
 gi|289416524|gb|EFD13764.1| helicase helZ [Mycobacterium tuberculosis T46]
          Length = 1009

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKANAAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEWNE 106
            I+ +     ++    F                   R       G    +    +  +  
Sbjct: 840 EILAE--GDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 897

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+       +E     R  + G +R V
Sbjct: 898 GDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRRTV 951

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 952 QVRKFICTGTLEEKIDEMIEEKKALADLVV 981


>gi|254416145|ref|ZP_05029900.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
 gi|196177078|gb|EDX72087.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
          Length = 1059

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKE-VHDEKIKAL 59
             Y K   E   +++            +  ++  Q+ N      +EK  K+     K+  L
Sbjct: 826  LYQKLVDESLVEIEAAEGIKRKGLILTLLMRLKQVCNHPAQLLKEKSLKDAKRSGKLLRL 885

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNE 106
            + ++++  +     ++   F      L+                     +    I  +  
Sbjct: 886  QEMLDEAISEGDRALIFTQFAEWGKLLKPYLAKQFDQEILFLYGATRKKQREEMIDRFQN 945

Query: 107  GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P+L     + G GLNL    N +     WW+       +E     R  + G  R 
Sbjct: 946  DPEGPPILILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQTRN 999

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  +   T++E +   + +K  + +  + A +
Sbjct: 1000 VQVHKFVCTGTLEERINDMIESKKQLAEQTVEAGE 1034


>gi|190572706|ref|YP_001970551.1| putative helicase [Stenotrophomonas maltophilia K279a]
 gi|190010628|emb|CAQ44237.1| putative helicase [Stenotrophomonas maltophilia K279a]
          Length = 1105

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++   + G  +   +       +K  Q+             +     K+
Sbjct: 863  LYETVRAAMEKQVREAISGSGLARSHIVVLDALLKLRQVCCDPRLLPGNAPARAAGSAKL 922

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNE 106
              L  ++         I+V   F   L+ + +                      +Q + +
Sbjct: 923  DLLREMLPPMVEEGRRILVFSQFTGMLSLIAQALDDLGLAYVTLTGDTQDRATPVQRFMQ 982

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+IP+      + G GLNL    + ++ F  WW+        E     R  + G ++ VF
Sbjct: 983  GEIPVFLISLKAGGVGLNLTA-ADTVIHFDPWWNPAA-----ENQASDRAHRIGQQQPVF 1036

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI   +I+E + +    K+ + + +L  
Sbjct: 1037 VYRLITAGSIEERIAELQERKALLAESILEG 1067


>gi|71909481|ref|YP_287068.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
 gi|71849102|gb|AAZ48598.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Dechloromonas
            aromatica RCB]
          Length = 1091

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 3    QYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +  +   ++ E                 +K  Q+             K     K+
Sbjct: 865  LYETVRAAMDAKVRDEIASKGFARSQIVILDALLKLRQVCCDPRLVKASSARKVTERAKL 924

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
              L  ++ +       ++V   F S LA ++    +                  I+ + +
Sbjct: 925  DLLMAMLPELVDEGRRVLVFSQFTSMLALIEHELDKAGITYVTLTGDTVDREVPIRRFQD 984

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++P+      + G GLNL    + ++ +  WW+       +E     R  + G  + VF
Sbjct: 985  CEVPIFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAHRLGQDKPVF 1038

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI   +I+E +L     K+ +   +L+ 
Sbjct: 1039 VYKLIVSGSIEEKILALQERKAELAAGILSE 1069


>gi|22299156|ref|NP_682403.1| putative helicase [Thermosynechococcus elongatus BP-1]
 gi|22295338|dbj|BAC09165.1| tlr1613 [Thermosynechococcus elongatus BP-1]
          Length = 999

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 72/216 (33%), Gaps = 23/216 (10%)

Query: 1   MKQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           M+ Y     +    ++         N  +   K  Q+ N    Y +++ +      K++ 
Sbjct: 765 MQLYTAVVEDSLAAIENSQGIQRRGNILATLTKLKQICNHPAQYLKQEDYAPDRSGKLQR 824

Query: 59  LEVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  +++         +V   F              L +            +    ++ + 
Sbjct: 825 LIEMLQALQEVGDRALVFTQFAEFGTHLKTYLEKALQQEVFFLSGRTPKAQRELMVERFQ 884

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL    N +  +  WW+       +E     R  + G  R
Sbjct: 885 HDPEAPRVFILSLKAGGVGLNLTR-ANHVFHYDRWWNPA-----VENQASDRVFRIGQAR 938

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V ++  I   T++E + +++  K  + ++++ + +
Sbjct: 939 NVQIHKFICTGTLEEKIHEQIEQKKALAEMIVGSGE 974


>gi|83649604|ref|YP_438039.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83637647|gb|ABC33614.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis KCTC
            2396]
          Length = 1106

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 77/215 (35%), Gaps = 23/215 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y        +++   +  + ++  +       +K  Q+         +   K     K+
Sbjct: 882  LYESIRVAMDKKIRDAIAKKGVKRSHIEILDALLKLRQVCCDPSLLKLDSARKVKSSAKL 941

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
              L  ++         I++   F S L  ++    +                  +  +  
Sbjct: 942  DTLMSMLPSLLEEGRKILLFSQFTSMLGLIEAQLDKAGIEYVKLTGATKDRDTPVNRFQN 1001

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++ L      + G GLNL    + ++ +  WW+       +E     R  + G  + VF
Sbjct: 1002 GEVSLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAYRIGQDKPVF 1055

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY LI + T++E +++  + K  + D LL A K E
Sbjct: 1056 VYKLITEGTVEEKIVELQKQKQALADNLL-ADKAE 1089


>gi|307947430|ref|ZP_07662764.1| helicase superfamily protein II [Roseibium sp. TrichSKD4]
 gi|307769572|gb|EFO28799.1| helicase superfamily protein II [Roseibium sp. TrichSKD4]
          Length = 906

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 22/214 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   +L   L+            +  ++  Q+ N    + ++  W E    K+  L 
Sbjct: 674 LYAQTVDDLAKKLEHLDGIQRRGLVLATLMRLKQICNHPSQWLDDDDWNEADSGKLARLR 733

Query: 61  VI--IEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-E 106
            I  +  +    ++V   F   +  L+                G  + K    +  +  +
Sbjct: 734 EISEVVASRQEKMLVFTQFQEVIEPLRTFLGSVFGKDGLVLHGGTAVAKRKKLVSAFQED 793

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP       + G GL L    + +V F  WW+       +E     R  + G K+ V 
Sbjct: 794 ETIPFFILSLKAGGSGLTLTA-ASHVVHFDRWWNPA-----VENQATDRAYRIGQKKNVL 847

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+ L+ + T++E +   + TK  + D LL+  K+
Sbjct: 848 VHKLLCRGTMEEKIDAMINTKQELADALLSKTKE 881


>gi|237654129|ref|YP_002890443.1| SNF2-related protein [Thauera sp. MZ1T]
 gi|237625376|gb|ACR02066.1| SNF2-related protein [Thauera sp. MZ1T]
          Length = 1100

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y         ++  ++ G+             +K  Q+             +     K+
Sbjct: 871  LYETVRAAMDEKVRAEIAGKGFARSQIVILDALLKLRQVCCDPRLLKSPAALRVKERAKL 930

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNE 106
              L  ++ +       I+V   F + L  +                        ++++ +
Sbjct: 931  DLLMDMLPELIDEGRRILVFSQFTTMLGLIAAELDKAKIGWVALTGDTRDRRVPVEDFQK 990

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + VF
Sbjct: 991  GRVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRIGQDKPVF 1044

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ L+   +I+E +L     K+ + + +L+ 
Sbjct: 1045 VFKLVCAGSIEEKILALQERKAALAESVLSE 1075


>gi|89902690|ref|YP_525161.1| SNF2-like protein [Rhodoferax ferrireducens T118]
 gi|89347427|gb|ABD71630.1| SNF2-related [Rhodoferax ferrireducens T118]
          Length = 1178

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 24/209 (11%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       RE   D +G            +K  Q+             K  +  K
Sbjct: 951  LYETIRLGMEKSVREAL-DTKGMAKSQITILDALLKLRQVCCDPHLVTLAAAKKVSNSAK 1009

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN 105
            ++ L  ++ +       I++   F S L  ++                  K    I+++ 
Sbjct: 1010 LERLMEMLPEMLAEGRRILLFSQFTSMLKLIEAELQKRNIPWIKLTGQSQKRDALIEQFT 1069

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G +PL      + G GLNL    + ++ +  WW+       +E     R  + G  ++V
Sbjct: 1070 SGAVPLFLISLKAGGVGLNLPQ-ADTVIHYDPWWNPA-----VENQATDRAHRIGQTQSV 1123

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +V  L+AQ TI+E +L     K+ + + +
Sbjct: 1124 WVVKLVAQGTIEERILGLQERKAALAESM 1152


>gi|219558075|ref|ZP_03537151.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis T17]
          Length = 527

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 298 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 357

Query: 61  VIIEKANAAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEWNE 106
            I+ +     ++    F                   R       G    +    +  +  
Sbjct: 358 EILAE--GDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 415

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+       +E     R  + G +R V
Sbjct: 416 GDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRRTV 469

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 470 QVRKFICTGTLEEKIDEMIEEKKALADLVV 499


>gi|312878818|ref|ZP_07738618.1| SNF2-related protein [Aminomonas paucivorans DSM 12260]
 gi|310782109|gb|EFQ22507.1| SNF2-related protein [Aminomonas paucivorans DSM 12260]
          Length = 1027

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y        E   +            +   +  Q+ N   ++  +    E    K+  L
Sbjct: 797  LYRAVLDRGEERVAE-SQGMTRRGEVLALLTRLKQVCNHPAHFLGDGSPLEGRSGKLARL 855

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN- 105
              ++ +        +V   F      L+                G    +    ++ +  
Sbjct: 856  VELLAQVREQGECALVFSQFAEMGGLLRDYLQRRLGEEVLFLHGGVPRVRRDEMVERFQG 915

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG   +      + G GL L    N +V +  WW+       +E     R  + G ++ V
Sbjct: 916  EGGPGVFVLSLKAGGTGLTL-SRANHVVHYDRWWNPA-----VEDQATDRAYRIGQRKNV 969

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            FV+ LI   T++E +   L +K+ + D ++ A ++
Sbjct: 970  FVHPLIVAGTLEERIDALLESKADLADRVVGAGER 1004


>gi|37521987|ref|NP_925364.1| helicase [Gloeobacter violaceus PCC 7421]
 gi|35212986|dbj|BAC90359.1| gll2418 [Gloeobacter violaceus PCC 7421]
          Length = 1054

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 74/216 (34%), Gaps = 24/216 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
             Y    +E+   ++     A      +   +  Q+ N  + + ++   +      K+  L
Sbjct: 822  LYAAVLKEVEAQIEQVEGIARKGLILATLTRLKQICNHPMQFLQDGSAFSPERSHKLCRL 881

Query: 60   EVIIEKA--NAAPIIVAY-----------HFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
            + + E+       ++V             HF             G + +K    I ++ +
Sbjct: 882  DEMAEEVLAEGESLLVFTQFHEIGAALERHFRQVRRWGTYYIHGGVSREKREKLIADFQD 941

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G G+ L    N +  F  WW+       +E     R  + G  + 
Sbjct: 942  PDSEPAVFILSLKAGGVGITLTR-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQTKN 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VFV+  +A  T++E + + L  K  +   ++ + + 
Sbjct: 996  VFVHKFVALGTLEERIDRMLEEKKRLASAIVGSDEG 1031


>gi|312897717|ref|ZP_07757133.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
 gi|310621101|gb|EFQ04645.1| protein, SNF2 family [Megasphaera micronuciformis F0359]
          Length = 463

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 4   YHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y + +  +  +L   GE I A ++A+ + K  QLANGAV YDE ++  E+HD KI+A + 
Sbjct: 256 YDEMETRMVLELVESGEEITAVSAAALSTKLQQLANGAV-YDELRNVHEIHDCKIEAFKE 314

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPAS 118
           +IE+ +  P +V Y+F  DL RL+ A  + + + K+       +EWNEGKI +L AHPAS
Sbjct: 315 LIEQLSGKPALVFYNFKHDLERLKAALDKSKLIVKELKGATEEREWNEGKIDVLLAHPAS 374

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             +GLNLQ GGN +++F L W LE +Q         R  + G +  V +++LI+  T DE
Sbjct: 375 TAYGLNLQDGGNHVIWFGLNWSLELYQ-----QANKRLHRQGQREKVIIHHLISIGTRDE 429

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            +++ L  K+  Q+ +L +LK   
Sbjct: 430 DMMEALNRKADAQEYVLQSLKARI 453


>gi|160935260|ref|ZP_02082643.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441991|gb|EDP19688.1| hypothetical protein CLOBOL_00156 [Clostridium bolteae ATCC
           BAA-613]
          Length = 456

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 7/206 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M++Y + ++E   +L G+ I A ++A+   K LQLANGA Y  E  +   +HD K+ AL 
Sbjct: 253 MRKYRELEKEKLLELDGKEITALSAAAVWGKLLQLANGAAYDGE-GNVIPLHDRKLDALA 311

Query: 61  VIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            I+E +   P++V Y+F  D  R + +         K    I++WNEG+IPLL A PAS 
Sbjct: 312 EILEASGGHPVLVFYNFRHDYDRLMGRFKGYNPRTLKSQQDIRDWNEGRIPLLLAQPASM 371

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLN+Q GG+I+V+F L   LE +          R  + G   AV ++ LI + T+DE 
Sbjct: 372 GHGLNIQAGGHIIVWFGLNPSLELYL-----QANARLHRQGQTEAVIIHRLITKGTVDED 426

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           V+++L  K   QD L+ +LK     +
Sbjct: 427 VVKKLWVKDETQDGLMESLKARIRRI 452


>gi|224826766|ref|ZP_03699866.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
 gi|224600986|gb|EEG07169.1| Non-specific serine/threonine protein kinase [Lutiella nitroferrum
            2002]
          Length = 1370

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 24/214 (11%)

Query: 1    MKQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y   +++    L     ++ +     ++  +  +          +    E+   K+K
Sbjct: 1149 LHLYEALRQQAVDKLDALGEQDNKPLKVLAEITRLRRFCCHPRLALPD---SELAGSKLK 1205

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            A   I ++   N    +V   F   LA ++    +               +    +  + 
Sbjct: 1206 AFAEIADELLENRHKALVFSQFVDHLAIVRAWLDERGIAYQYLDGSTPARERKARVDAFQ 1265

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  L      + G GLNL    + ++    WW+       +E     R  + G +R V
Sbjct: 1266 AGQGDLFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRMGQQRPV 1319

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VY L+A++TI+E ++     K  + D LL   +
Sbjct: 1320 TVYRLVAEHTIEEQIVALHAAKRDLADSLLEGGE 1353


>gi|256847828|ref|ZP_05553273.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715517|gb|EEU30493.1| superfamily II DNA/RNA helicase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 451

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 114/198 (57%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+  N+ S + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 254 IYDELNAQLVVSTQGKQIDVLNATSLSNKLCQMANGCV-YDDQQQIVQIHQRKLDALEDL 312

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  DL +++          K P  IQ+WN G IPL   HPAS GHG
Sbjct: 313 VEAANGKPVLVAYWFKHDLIQIK--SRFKVREIKTPRDIQDWNAGNIPLALIHPASAGHG 370

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L 
Sbjct: 371 LNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILA 425

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 426 ALKRKDKTQLALINAVKA 443


>gi|159898290|ref|YP_001544537.1| non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159891329|gb|ABX04409.1| Non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1055

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDL----QGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +++ +    L      + I           ++  Q+ N        +     H  K
Sbjct: 834  KLYQRYRDQYRAMLLSLIDDQGINDSRIKVLEGLLRLRQICNHPQLV---EATFRGHSAK 890

Query: 56   IKALEVIIE--KANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWN 105
               L   +E   A     ++   F   L         R           +     +  + 
Sbjct: 891  FDQLLETLEVLHAEGHKALIFSQFVQMLTLLWKELDRRNLSYAYLDGKTNNRAAVVDRFQ 950

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + +I        + G GLNL    + ++    WW+    Q         R  + G  + 
Sbjct: 951  TDPQIHFFLISLKAGGVGLNLTA-ADYVIHIDPWWNPAVEQ-----QATDRTHRIGQDKP 1004

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VF+Y LI +N+++E +LQ    K  + + ++ +
Sbjct: 1005 VFIYKLIVRNSVEEKILQLQERKRALANNIITS 1037


>gi|186686080|ref|YP_001869276.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186468532|gb|ACC84333.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + EA        ++ +K  +               E+   K++  
Sbjct: 1184 YEALRRQAISKLTESDAEAGKKHLQVLAEIMKLRRACCNPSLVMPGT---ELPSSKLQLF 1240

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++    Q            ++ +    +  +  G
Sbjct: 1241 GEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQAG 1300

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1301 SGDVFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQQRPVTI 1354

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A++TI+E +++    K  + D LL   +
Sbjct: 1355 YRLVAKDTIEEKIVELHHHKRDLADSLLEGTE 1386


>gi|253580974|ref|ZP_04858236.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847816|gb|EES75784.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1114

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  +             ++  K  Q+         +         K+
Sbjct: 891  KLYDAHVKRMMLMLDKQSEEEFKTSKITILAELTKLRQICCDPSLIFADYKA---DSAKV 947

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
                 +I     +   I++   F + L                     + +K    ++ +
Sbjct: 948  DMCLNMISNAVESGHKILLFSQFTTMLDHLAKRLEEEKISYYMLTGSTSKEKRAQMVENF 1007

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N     +      + G GLNL    +I++ F  WW+L      ++     R  + G K  
Sbjct: 1008 NTDDTQVFCISLKAGGTGLNLTA-ADIVIHFDPWWNLA-----VQNQATDRAHRIGQKNV 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY LI ++TI+E +L+    K  + D +L  
Sbjct: 1062 VNVYKLIVKDTIEENILKLQEKKRELADQILEG 1094


>gi|296132117|ref|YP_003639364.1| SNF2-related protein [Thermincola sp. JR]
 gi|296030695|gb|ADG81463.1| SNF2-related protein [Thermincola potens JR]
          Length = 1084

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + Q E+  ++   G         +   +  Q+      + E          K
Sbjct: 861  KIYLAYLKQAQGEIMREIGTVGFEKSRMKILAALTRLRQICCHPGLFIENYT---GDSGK 917

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
            ++ L+ +IE A      I++   F S L                       ++    ++ 
Sbjct: 918  MQLLQEVIEDALAGGHRILLFSQFTSMLGIIREYLVSQNIEYHYLDGNTRAEQRQEMVRA 977

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G   +      + G GLNL  G +++V F  WW+       +E     R  + G ++
Sbjct: 978  FNAGDGQVFLISLKAGGTGLNLT-GADMVVHFDPWWNPA-----VEDQATDRAYRIGQQQ 1031

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V+ L+ + TI+E +    + K  + D ++ 
Sbjct: 1032 VVQVFKLVTRGTIEEKIFTLQQKKKELIDSVIQ 1064


>gi|289570215|ref|ZP_06450442.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289543969|gb|EFD47617.1| predicted protein [Mycobacterium tuberculosis T17]
          Length = 517

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 288 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 347

Query: 61  VIIEKANAAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEWNE 106
            I+ +     ++    F                   R       G    +    +  +  
Sbjct: 348 EILAE--GDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 405

Query: 107 GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G   P+      + G GLNL    N +V    WW+       +E     R  + G +R V
Sbjct: 406 GDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRRTV 459

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V   I   T++E + + +  K  + DL++
Sbjct: 460 QVRKFICTGTLEEKIDEMIEEKKALADLVV 489


>gi|225405817|ref|ZP_03761006.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
 gi|225042657|gb|EEG52903.1| hypothetical protein CLOSTASPAR_05038 [Clostridium asparagiforme
           DSM 15981]
          Length = 459

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 11/207 (5%)

Query: 1   MKQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +  Y + +R++  +L     +I   ++A+ + K LQLANGAV YDE++   E+H  KI+A
Sbjct: 254 LNAYTELERKMILELPEDESDISVTSAAALSNKLLQLANGAV-YDEDRTVHEIHGCKIEA 312

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAH 115
              +IE     P +V Y++  D  R+ KA    +   +    P    +WN  KI +L  H
Sbjct: 313 FLELIESLQGKPALVFYNYQHDRERILKALAGSKLRIRELKKPQDEDDWNARKIDILLTH 372

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           PAS  +GLNLQ GGN +++F L W+ E +          R  + G    V +++L+   T
Sbjct: 373 PASSAYGLNLQQGGNHVIWFGLTWNYELYT-----QANKRLHRQGQTEKVIIHHLVCSGT 427

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
            DE V+Q L+ K  +Q+ ++ +LK   
Sbjct: 428 RDEDVMQALQRKDDVQNWVMESLKARI 454


>gi|29840686|ref|NP_829792.1| Snf2/Rad54 family helicase [Chlamydophila caviae GPIC]
 gi|29835036|gb|AAP05670.1| helicase, Snf2/Rad54 family [Chlamydophila caviae GPIC]
          Length = 1205

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DE 54
            K Y    +     +      + + +   +  +      Q+ N    + +       H   
Sbjct: 956  KLYQSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K  A   ++ ++  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWNAFVRLLHESLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQNSNILHM 1171


>gi|78186764|ref|YP_374807.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166666|gb|ABB23764.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 1006

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     EL   ++            +  VK  Q+ N  V +  +         K++ L 
Sbjct: 775 LYKAVVDELQEKIESSEGIERRGMVLALLVKLKQVCNHPVQFLGDNSSVADRSGKLQRLL 834

Query: 61  VIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
            ++ +   ++   +V   F              L           +  K    I+ +  G
Sbjct: 835 ELLAEIRESSERTLVFTQFREMGSLLQAHLQERLGEEVFFLHGSLSRKKRDEMIEAFQNG 894

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    + ++ +  WW+       +E     R  + G K  V
Sbjct: 895 DDAPRIFILSLKAGGSGLNLTK-ASHVIHYDRWWNPA-----VENQATDRAFRIGQKHNV 948

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+  I   T++E + + +  K+T+   +L   ++
Sbjct: 949 EVHKFITAGTLEERIDEMIEKKTTVSGTVLGNGEQ 983


>gi|303239099|ref|ZP_07325629.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302593437|gb|EFL63155.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 452

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 111/201 (55%), Gaps = 8/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y K +RE        +++A N+A    K LQ++NGAV YDE    + +H  K++ LE 
Sbjct: 254 ELYRKLEREALLPFVDGDVDAVNAAVLAGKLLQMSNGAV-YDENGGVRSIHRRKLEMLED 312

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++V Y +  D  R+ KAF         P  I +WN+G+I +  AHPAS GH
Sbjct: 313 LIESANGKPVLVYYAYKHDRERILKAFKARDIDT--PKDISDWNDGRIGIAIAHPASAGH 370

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ GG+ +++F L W LE +QQ   RI      + G    V V ++I   T+DE V+
Sbjct: 371 GLNLQAGGSTIIWFGLTWSLELYQQANGRI-----HRQGQTETVIVNHIITAGTMDEQVM 425

Query: 182 QRLRTKSTIQDLLLNALKKET 202
             L  K T Q  L+NA++   
Sbjct: 426 AALNRKETGQTALINAVRARM 446


>gi|298242061|ref|ZP_06965868.1| SNF2-related protein [Ktedonobacter racemifer DSM 44963]
 gi|297555115|gb|EFH88979.1| SNF2-related protein [Ktedonobacter racemifer DSM 44963]
          Length = 1068

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y    +E+   +             S  ++  Q+ N   ++  ++        K+  LE
Sbjct: 837  LYDAVVKEMLEKIDDAKGIERKGMILSALLRLKQVCNHPAHFMGDESALGKRSGKVLRLE 896

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE- 106
             ++E+        ++   F              L R       G         +  + + 
Sbjct: 897  EMLEEVLAEGDKALIFTQFAEMGQLLRRHLQEQLGREVLFLHGGTPKKVRDQLVTRFQDE 956

Query: 107  -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL      + G GLNL    N +  F  WW+       +E     R  + G  R V
Sbjct: 957  RDDAPLFLLSLKAGGVGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAFRIGQHRNV 1010

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V+  +   T++E +   + +K  + + ++ + +
Sbjct: 1011 QVHKFVCVGTLEERIDAMIESKKALAENIIGSGE 1044


>gi|322419843|ref|YP_004199066.1| SNF2-like protein [Geobacter sp. M18]
 gi|320126230|gb|ADW13790.1| SNF2-related protein [Geobacter sp. M18]
          Length = 1385

 Score =  131 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   ++    +L      +G+        ++ ++  +          +     +   K+
Sbjct: 1162 LYQAIRKSALDNLAGIGKVEGKGELHLKILAEIMRLRRACCNPRLVLPDSA---IASAKL 1218

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
             A   I+E+   N    +V   F   L  +++   +               +    +  +
Sbjct: 1219 AAFAEIVEELRENRHKALVFSQFVGHLEIIREHVERAGIPYQYLDGSTPAVERKRRVDAF 1278

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  L      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1279 QSGEGDLFLISLKAGGVGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQQRP 1332

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+ + TI+E ++   + K  + D LL  
Sbjct: 1333 VTIYRLVTKGTIEEKIVGLHQQKRGLADSLLEE 1365


>gi|327461127|gb|EGF07460.1| SNF2 domain protein [Streptococcus sanguinis SK1057]
          Length = 450

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 82/199 (41%), Positives = 128/199 (64%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +F+ E+   L+G+ ++A NSAS + K LQ+ANG V YD+ +    +HD+K+ ALE +
Sbjct: 251 VYKEFKAEMVVSLKGQVLDAVNSASLSNKLLQMANGMV-YDDNRKTVLLHDQKLVALEEM 309

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E  N  P+++AY F  DL R+++ +P+ R   +    I++WN+GKI L   HPAS GHG
Sbjct: 310 VESMNGRPLLIAYCFQHDLRRIKERYPEARV-IQSNQDIEDWNKGKIVLGLIHPASSGHG 368

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I +N+IDE V++
Sbjct: 369 LNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKNSIDEQVMK 423

Query: 183 RLRTKSTIQDLLLNALKKE 201
           RL+ K   Q  L++A+K E
Sbjct: 424 RLKEKDISQQSLIDAVKYE 442


>gi|17231890|ref|NP_488438.1| hypothetical protein alr4398 [Nostoc sp. PCC 7120]
 gi|17133534|dbj|BAB76097.1| alr4398 [Nostoc sp. PCC 7120]
          Length = 1075

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 31/223 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K       +++            +  +K  Q+ N    Y +    ++    K++ LE
Sbjct: 832  LYQKAVETSLAEIESAEGLQRRGMILALLIKLKQICNHPAQYLKINTLEQHSSGKLQRLE 891

Query: 61   VIIEKA----------NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPC 99
             ++E+            A   ++   F              L R       G +  +   
Sbjct: 892  EMLEEVLAESNTYGVAGAGRALIFTQFAEWGKLLKPHLEKQLGREIFFLYGGTSKKQREE 951

Query: 100  TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +       P++     + G GLNL    N +  F  WW+       +E     R  
Sbjct: 952  MIDRFQHDPQGPPIMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVF 1005

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V V+  +   T++E +   + +K  + + ++ A ++
Sbjct: 1006 RIGQTRNVQVHKFVCNGTLEEKIHDMIESKKQLAEQVVGAGEE 1048


>gi|271968044|ref|YP_003342240.1| SNF2/helicase domain-containing protein [Streptosporangium roseum DSM
            43021]
 gi|270511219|gb|ACZ89497.1| SNF2/helicase domain protein [Streptosporangium roseum DSM 43021]
          Length = 1040

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 2    KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y     ++   + G        N  +   +  Q+ N   +  ++         K+  L
Sbjct: 810  ELYKAVVNDMLDRIDGSRGIERRGNVLATMTRLKQICNHPAHLLKDGSRLAGRSGKLARL 869

Query: 60   EVIIEKAN--AAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWN- 105
            E + E+        +V   +              L R       G   ++    ++ +  
Sbjct: 870  EELAEEIVEEGDKALVFTQYTEFGSLLQPYLAAHLDRPVLWLHGGLPKNRREELVERFQR 929

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + +  L      + G GLNL    N ++    WW+       +E     R  + G  R V
Sbjct: 930  DDEPMLFLLSLKAAGTGLNLTA-ANHVIHVDRWWNPA-----VENQATDRAFRIGQTRNV 983

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V   I  +T++E + + +  K  + + ++ A +
Sbjct: 984  QVRKFICVDTLEERIDEMIERKKALAESVVGAGE 1017


>gi|258545090|ref|ZP_05705324.1| Snf2 family protein [Cardiobacterium hominis ATCC 15826]
 gi|258519667|gb|EEV88526.1| Snf2 family protein [Cardiobacterium hominis ATCC 15826]
          Length = 1017

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 76/217 (35%), Gaps = 25/217 (11%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y   ++     L       G      +     +K  Q+ N      + + +      K
Sbjct: 796  KLYDATKKRYREQLLHQIAADGIEKSQLHILDGLLKLRQICNSPALLADREDY-GDDSAK 854

Query: 56   IKALEVIIEKANA-APIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWN 105
            +  L   I++      I+V   F   L  +Q           +  G+T D+         
Sbjct: 855  LDLLLENIKEKTGAHKILVFSSFVKMLGLIQARLDAENIPYEYLDGQTRDRKAKVENFQT 914

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               + +      + G GLNL    + +     WW+       +E   + R  + G ++ V
Sbjct: 915  NDAVRVFLISTKAGGTGLNLTE-ADYVFIVDPWWNPA-----VENQAIDRSHRIGQEKHV 968

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKK 200
              Y +I +N+I+E +L     K  I + ++  ++ KK
Sbjct: 969  MAYRIICKNSIEEKILALQDKKRRIAESIISVDSDKK 1005


>gi|225376574|ref|ZP_03753795.1| hypothetical protein ROSEINA2194_02216 [Roseburia inulinivorans DSM
            16841]
 gi|225211611|gb|EEG93965.1| hypothetical protein ROSEINA2194_02216 [Roseburia inulinivorans DSM
            16841]
          Length = 1098

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 34/230 (14%)

Query: 1    MKQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            +  Y    +++   L G+             ++  K  QL        E+   +     K
Sbjct: 876  LALYDAHVQQMKQMLDGKSEAEFKSNKIQILAELTKLRQLCCDPALLFEDYKGE---SAK 932

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
            ++    +I         +++   F + L R                     +K    +  
Sbjct: 933  VQMCMDLIGNAVHGGHKVLLFSQFTTMLDRLAEQLTKLGIDYYMLTGSVNKEKRMQMVDS 992

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+  +P+      + G GL+L    +I++ +  WW++      ++     R  + G K 
Sbjct: 993  FNKDDVPVFCISLKAGGTGLSLTA-ADIVIHYDPWWNVA-----VQNQATDRAHRIGQKN 1046

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             V VY L++Q TI+E ++     K  + + +L           K+E + +
Sbjct: 1047 VVTVYKLVSQGTIEEKIIDIQEKKKKLAEQVLEGEGMDSVVFTKEEIMEL 1096


>gi|37521835|ref|NP_925212.1| helicase [Gloeobacter violaceus PCC 7421]
 gi|35212834|dbj|BAC90207.1| glr2266 [Gloeobacter violaceus PCC 7421]
          Length = 1008

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   E    ++            +  VK  Q+ N   +Y  +         K+  L 
Sbjct: 772 LYERVVNESLAKIEQSTGIQRRGTVLATLVKLKQICNHPSHYLGDDGPLANRSGKLSRLG 831

Query: 61  VIIEKA--NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEG 107
            ++E+   +    ++   F                        G + ++    I+ +   
Sbjct: 832 EMLEEVLADEERALIFTQFAEWGHLLQAHLSRQLGSEVFFLYGGTSKNQREAMIERFQSD 891

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    N +  F  WW+       +E     R  + G  + V
Sbjct: 892 PQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQTKNV 945

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY  +   T++E +   + +K  + + +++A +
Sbjct: 946 QVYKYVCTGTLEERINALIESKKALAEQVVSAGE 979


>gi|158334343|ref|YP_001515515.1| SNF2 family helicase putative [Acaryochloris marina MBIC11017]
 gi|158304584|gb|ABW26201.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
          Length = 1407

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 25/215 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+   +L   + +A        ++ +K  +    A     E         K+
Sbjct: 1185 MALYEALRRQAIANLADSDAQAGAKHLQVLAEIMKLRRTCCNAQLVMPESPPA---SAKL 1241

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEW 104
            +    ++E+  AN    +V   F   L  LQ    + +   +              ++ +
Sbjct: 1242 QLFGEVLEELLANHHKALVFSQFVDHLKILQDYLEKKQIAYQYLDGSTPAKIRQLRVKAF 1301

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G+  +      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1302 QSGEGEVFLISLKAGGTGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQRRP 1355

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +Y L+A+NTI+E ++   R K  + D LL   +
Sbjct: 1356 VTIYRLVAKNTIEEKIVDLHRHKRDLADSLLEGTE 1390


>gi|254425442|ref|ZP_05039160.1| SNF2 family N-terminal domain protein [Synechococcus sp. PCC 7335]
 gi|196192931|gb|EDX87895.1| SNF2 family N-terminal domain protein [Synechococcus sp. PCC 7335]
          Length = 1081

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 24/217 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKA 58
            + Y K       ++                VK  Q+ N    + ++    K     K++ 
Sbjct: 846  RLYQKLVDSTLGEIDEATGLQRRGMILGLLVKLKQICNHPAQFLQQDSLGKSRRSGKLQR 905

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
            L+ ++E+        ++   F      L                   + +K    +  + 
Sbjct: 906  LDEMLEEVVAEGDRALIFTQFAEWGKLLSSHLEHRLGTESLFLYGSTSKNKREEMVDRFQ 965

Query: 106  EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +      + G GLNL    N +  F  WW+       +E     R  + G  +
Sbjct: 966  LDPNGPKIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRAFRIGQTK 1019

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V+  +   T++E + + + +K  + + ++ A ++
Sbjct: 1020 NVQVHKFVCTGTLEERINEMINSKKALAEQVVGAGEQ 1056


>gi|186687055|ref|YP_001870198.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
 gi|186469358|gb|ACC85157.1| SNF2-related protein [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +A        ++ +K  +          +     +   K++  
Sbjct: 1184 YEALRRQAISKLTESDADAGKKHLQVLAEIMKLRRACCNPSLVMPDTV---LPSSKLQLF 1240

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L  ++    Q            ++ +    +  +  G
Sbjct: 1241 GEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQAG 1300

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1301 SGDVFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQQRPVTI 1354

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E ++Q    K  + D LL  
Sbjct: 1355 YRLVAKDTIEEKIVQLHHQKRDLADSLLEG 1384


>gi|159901735|ref|YP_001547981.1| non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159894774|gb|ABX07853.1| Non-specific serine/threonine protein kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1021

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 2    KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +++ +    L       G N          ++  Q+ N     +     +    E+
Sbjct: 800  KLYQRYRDQYRAQLLSLIDDHGMNDSRMKVLEGLLRLRQICNHPRLVESTFRGRSAKFEQ 859

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN-E 106
            +     I+ +A     ++   F   L  L++   Q                  +  +  +
Sbjct: 860  LLETLAIL-QAEGHKALIFSQFVQMLTILREHLDQQNVSYTYLDGKTQNRAAVVDRFQTD 918

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +        + G GLNL    + ++    WW+    Q         R  + G ++ VF
Sbjct: 919  PHVHFFLISLKAGGVGLNLTA-ADYVIHIDPWWNPAVEQ-----QATDRTHRIGQEKPVF 972

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y LI + +++E ++     K  + D ++ +
Sbjct: 973  IYKLIVRESVEEKMVHLQERKRALADSIITS 1003


>gi|240145145|ref|ZP_04743746.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|257202823|gb|EEV01108.1| superfamily II DNA/RNA helicase, SNF2 family [Roseburia intestinalis
            L1-82]
 gi|291537657|emb|CBL10769.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            M50/1]
 gi|291537792|emb|CBL10903.1| Superfamily II DNA/RNA helicases, SNF2 family [Roseburia intestinalis
            XB6B4]
          Length = 1099

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 34/230 (14%)

Query: 1    MKQYHKF---QRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            M+ Y  +    +E+      +          S+  K  QL        E+ H +     K
Sbjct: 877  MQLYDAYATRMKEMLSQQNEKEFHKGRMQILSELTKLRQLCCDPGLLLEDYHGE---SAK 933

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
                  +I  A      I++   F S L R                     +K    ++ 
Sbjct: 934  TDMCMELIVNAVGAGHKILLFSQFTSMLDRLTERLKKEGIDYYLLTGSVNKEKRMQMVES 993

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N   +P+      + G GLNL    +I++ +  WW++      ++     R  + G K 
Sbjct: 994  FNNDDVPVFCISLKAGGTGLNLTS-ADIVIHYDPWWNVA-----VQNQATDRAHRIGQKH 1047

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             V VY L+A+ TI+E ++     K  + + +L           K+E + +
Sbjct: 1048 VVTVYKLVAEGTIEEKIIDIQERKKKLAEQVLEGEGMDSASFTKEEILEL 1097


>gi|303238661|ref|ZP_07325194.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302593780|gb|EFL63495.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 1088

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F ++   ++      +G         +   +  Q+      + E          K
Sbjct: 865  KLYAAFLKQAQGEVAAEIREKGIERSKIKILALLTRLRQICCHPAMFVENYK---GGSGK 921

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
            +  L  II     +   +++   F S    +                     +    +  
Sbjct: 922  LDTLLEIIGDSIDSGHRLLLFSQFTSMHDIIGKALKESGKSYFYIDGSTKAKERIDMVNR 981

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  L      + G GLNL  G ++++ +  WW+       +E     R  + G  +
Sbjct: 982  FNNGENDLFLISLKAGGTGLNLT-GADMVIHYDPWWNPA-----VEDQATDRAYRIGQTK 1035

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            AV V+ +I + TI+E + +    K  + + ++ 
Sbjct: 1036 AVQVFKIITKGTIEEKIYELQEKKRGLINNVIQ 1068


>gi|121604005|ref|YP_981334.1| SNF2-like protein [Polaromonas naphthalenivorans CJ2]
 gi|120592974|gb|ABM36413.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
          Length = 899

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L   L+               ++  Q+ N    +  +  WK     K   L 
Sbjct: 667 LYQDAVHNLAAALEDAEGIGRKGLVLSFLMRFKQICNHPSQWLGDGAWKAQDSGKFARLR 726

Query: 61  VII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            ++    A    ++V   F                R       G  + +    ++ +  +
Sbjct: 727 ELVEVIAAKQEKVLVFTQFRETTEPLAAFLGSIFGREGLVLHGGTPVARRRELVRRFQED 786

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            + P       + G GLNL    + ++ F  WW+       +E     R  + G +R V 
Sbjct: 787 EQTPFFVLSLKAGGAGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAFRIGQQRNVL 840

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  I + T+++ + Q + +K  +   +L  
Sbjct: 841 VHKFICRGTVEDRIDQLIESKQQLVQDVLEG 871


>gi|162451641|ref|YP_001614008.1| SWF/SNF family helicase [Sorangium cellulosum 'So ce 56']
 gi|161162223|emb|CAN93528.1| SWF/SNF family helicase [Sorangium cellulosum 'So ce 56']
          Length = 1011

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 23/220 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     E    ++            S      Q+ N       E         K+  L 
Sbjct: 769 LYQAALDEAMRRIEEAEGIERRGLVLSLLTVLKQICNHPAQCLGEAGPLAGRSGKLARLT 828

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            ++E+A       +V   F     RL +               G         ++ + + 
Sbjct: 829 EMLEEALAAGDRALVFTQFREMGDRLVRHLAPSLDAEVLFLHGGTPRLARDEMVRRFQDD 888

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    + +  F  WW+       +E     R  + G +RAV
Sbjct: 889 PRGPHVFVLSLKAGGAGLNLTA-ASHVFHFDRWWNPA-----VEDQATDRAHRIGQRRAV 942

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+ L+   T++E V + L  K  +   ++   +     +
Sbjct: 943 QVHKLVCAGTVEEKVDRMLEQKRDLAAQVVGQGEAWITEL 982


>gi|120611497|ref|YP_971175.1| SNF2-like protein [Acidovorax citrulli AAC00-1]
 gi|120589961|gb|ABM33401.1| SNF2-related protein [Acidovorax citrulli AAC00-1]
          Length = 991

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y   +           + QG            +K  Q+               +   K
Sbjct: 731 ELYEAVRTGADKQVRRVLERQGFEGGLITILDALLKLRQVCCDPRLVKGLPDASGMESAK 790

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDK-DPCTIQE 103
           +  L  ++    A    ++V   F   L          RL      G T  +     ++ 
Sbjct: 791 LDRLAELLPPLVAEGRRVLVFSQFTGMLDLAGQRLDALRLPWLALTGATAPRQRASVVRR 850

Query: 104 WNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +    G  P+L A   + G GLNL    + ++    WW+    +         R  + 
Sbjct: 851 FQDPSAEGSAPILLASLKAGGTGLNLTA-ADTVIHLDPWWNPAVME-----QASARAHRI 904

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  R VF+++L+A+ +I+E +L+    K  + D +L 
Sbjct: 905 GQDRPVFIHHLVAEGSIEERMLELQARKQALADGVLG 941


>gi|94986612|ref|YP_594545.1| SNF2 family DNA/RNA helicase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730861|emb|CAJ54224.1| Superfamily II DNA/RNA helicases, SNF2 family [Lawsonia
            intracellularis PHE/MN1-00]
          Length = 1073

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 22/207 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
             K + ++  D++ + I     +     +K  Q+                  +   K +A 
Sbjct: 853  KKLRSQVLADIETKGIAKSQMSILDALLKLRQICCHPRLLKVDMPGFSIGSLASGKFEAF 912

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGK 108
            + +I         ++V   F   L  ++           +  G + D+     +  N  +
Sbjct: 913  KDMIFDIVEGGHKVLVFSQFVQMLQLIKSWLQITDIPFCYLDGTSKDRLEQVDKFNNTPE 972

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            IP+      + G GLNL    + ++ +  WW+       +E     R  + G  R VF Y
Sbjct: 973  IPVFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VESQATDRTHRIGQTRQVFSY 1026

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI QNT++E +L+    K  + + ++
Sbjct: 1027 KLICQNTVEEKILKLQEMKRGVAEAII 1053


>gi|124515406|gb|EAY56916.1| DNA/RNA helicase, SNF2 family [Leptospirillum rubarum]
          Length = 882

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y K  +EL   L   +  A         ++  Q+ N    +  +  W      K   L  
Sbjct: 650 YRKTVKELESALDKTDGIARKGLVLAFLMRFKQICNHPSQWLGDGGWNPKDSGKFHRLAE 709

Query: 62  I--IEKANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWN-EG 107
           I     A    +++   F                R       G  + K    ++ +  + 
Sbjct: 710 IAETVAAKQEKMLIFTQFQEATLPLAAFLGGIFGRDGLVLHGGTPVGKRRELVRRFQEDE 769

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P       + G GLNL    + +V F  WW+       +E     R  + G  + V V
Sbjct: 770 DTPFFVLSLKAGGTGLNLTA-ASHVVHFDRWWNPA-----VENQATDRAWRIGQHKNVLV 823

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  + + T++E + + +R+K+ +   +L 
Sbjct: 824 HKFLCRGTVEERIDKLIRSKTELVREVLE 852


>gi|302555175|ref|ZP_07307517.1| helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302472793|gb|EFL35886.1| helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 284

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 25/222 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
            Y    RE    ++     A             Q+ +    + +E+H +          K
Sbjct: 54  LYEAVVRESMLAIETAEGIARRGMVLKLLTSLKQICDHPALFLKEEHAQSGDRLAARSGK 113

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQE 103
           +  L+ +++         +V   +      +                G  + +    +  
Sbjct: 114 LALLDELLDTLLAEDGSALVFTQYVGMARLITSHLATRAVPVDLLHGGTPVPERERMVDR 173

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  +
Sbjct: 174 FQAGSTPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQ 227

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ LI + T+++ + + L  K  + D +L + +     +
Sbjct: 228 PVQVHRLITEGTVEDRIAEMLEAKRALADAILGSGESALTEL 269


>gi|317484163|ref|ZP_07943092.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924512|gb|EFV45669.1| SNF2 family domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1343

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 27/212 (12%)

Query: 4    YHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +R     L+    E       F+  ++ +K  +     V  D       +   K+ 
Sbjct: 1125 YEALRRNALASLEAAKQEDAEGSQKFSILTELMKLRRACCAPVLIDPGTS---LTGAKLS 1181

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWN 105
            A   ++E+        +V   F   L+             +         +    +  + 
Sbjct: 1182 AFMELVEELVRGGHKALVFSQFVGCLSEARRLLDAAGYGYQYLDGSTPDRERQAAVAAFQ 1241

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             GK  L      + G GLNL    + ++    WW+       +E     R  + G +R V
Sbjct: 1242 SGKGDLFLISLKAGGQGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAYRLGQQRPV 1295

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY L+A+ T++E +L+  R+K  +   +L  
Sbjct: 1296 TVYRLVARGTVEESILKLHRSKRALAADVLEG 1327


>gi|303257421|ref|ZP_07343434.1| SNF2/helicase domain protein [Burkholderiales bacterium 1_1_47]
 gi|302859778|gb|EFL82856.1| SNF2/helicase domain protein [Burkholderiales bacterium 1_1_47]
          Length = 1361

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +  Y   +      LQ E I    +     K  Q A      D       +   KI+   
Sbjct: 1143 LAIYENIRTRTLSGLQSEKINPIEALMALTKLRQAACSPELVD---KHLTIPSSKIRVFL 1199

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK 108
             ++ +   N    +V   F S LA +++                   +    ++ +  G 
Sbjct: 1200 ELVRELKENKHRALVFSQFTSFLALVRQALDKAGIEYLYLDGSVPAAQRKKLVETFQNGD 1259

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+       +E     R  + G KR V +Y
Sbjct: 1260 MPLFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAYRIGQKRPVTIY 1313

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI++ T+++ +L+  +TK  + D LL  
Sbjct: 1314 KLISEKTVEQKILELHKTKKNLADALLEG 1342


>gi|331090252|ref|ZP_08339139.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401871|gb|EGG81446.1| hypothetical protein HMPREF1025_02722 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 453

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 118/201 (58%), Gaps = 8/201 (3%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y + ++++    +  +++A N+A+ + K LQ+ANGAV YDE    + +HD+K+ ALE 
Sbjct: 250 KLYRQKEKDMLLPFEDGDVDAVNAAALSGKLLQMANGAV-YDENHKVRHIHDKKLDALED 308

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE AN  P++VAY +  DL R+           K    I++W EGKIP+   HPAS GH
Sbjct: 309 LIEAANGKPVLVAYWYQHDLDRIV--ERFKAVPLKAAGDIRKWKEGKIPVAAIHPASAGH 366

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG+IL++F L W LE + Q   R+      + G +  V +Y++I + T+DE  +
Sbjct: 367 GLNIQDGGHILIWFGLTWSLELYMQCNARLW-----RQGQRETVMIYHIINKGTLDEDAM 421

Query: 182 QRLRTKSTIQDLLLNALKKET 202
           + L  K   Q  +++A+K   
Sbjct: 422 RSLEQKDCGQSAIIDAVKARI 442


>gi|255524582|ref|ZP_05391536.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296185768|ref|ZP_06854175.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255511735|gb|EET88021.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|296049596|gb|EFG89023.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 929

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 27/220 (12%)

Query: 2   KQY----HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y     + + E+  +++ + I        S   +  Q+      + E     E  + K
Sbjct: 704 KVYAAYLQQAKEEVNNEIRDKGINKSKIKILSIITRLRQICCDPSTFIENY---EGDNGK 760

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
           ++AL+ I++    +   I++   F S L                       +     ++E
Sbjct: 761 MEALKDIVQNNVNDGHKILLFSQFTSVLKNIGEMFKSENIKYMYLDGSVKAEDRGEIVRE 820

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +NEG+IP+      + G GLNL    +I++ +  WW+       +E     R  + G K+
Sbjct: 821 FNEGEIPIFLISLKAGGTGLNLTS-ADIVIHYDPWWNPA-----VENQASDRAHRIGQKK 874

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V V  LIA+ TI+E + +    K  I + ++     E I
Sbjct: 875 TVEVIRLIAKGTIEEKIHKIQEKKKEIINDVIEENAGEEI 914


>gi|257064183|ref|YP_003143855.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
            heliotrinireducens DSM 20476]
 gi|256791836|gb|ACV22506.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
            heliotrinireducens DSM 20476]
          Length = 1082

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 28/222 (12%)

Query: 1    MKQY---HKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
            ++ Y    +  R+       E+++         ++ +   Q+                  
Sbjct: 857  LELYRAHEQMLRQKIASQTDEDMKDGTQKIEVLAELMHLRQICCDPHLM---TSRYNGPA 913

Query: 54   EKIKALEVII--EKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLD-KDPCTI 101
             K+ AL  +I         ++V   F S L          R+      G T   K    +
Sbjct: 914  AKLDALSDLIGSCMDAGQKMLVFSQFKSFLDIIADRLDEQRIAHFAITGDTPSAKRLELV 973

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + +N    P+      + G GLNL  G ++++    WW+              R  + G 
Sbjct: 974  ERFNADDTPVFLISLKAGGTGLNLT-GASVVIHADPWWNAAAQ-----NQATDRAHRIGQ 1027

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               V V+ +IA++TI+E ++     K  + + ++ A +  ++
Sbjct: 1028 THVVSVHKIIAKDTIEERIMALQDAKRDLAEQIIGATEGSSL 1069


>gi|196233486|ref|ZP_03132329.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
 gi|196222482|gb|EDY17009.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
          Length = 815

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 3   QYHKFQR---ELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y +  +       DL G            +  ++  Q         ++    E    KI
Sbjct: 593 VYAELVKATRRTLSDLAGGKDQGKARIAMLTALLRLRQACCDLRLLGQDDIESEQASAKI 652

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNE 106
           + L  ++ +       +++   F S L  L+               +       +  +  
Sbjct: 653 ELLRELLAEAVDGGHRVLIFSQFVSMLTLLREALTEDEIPYCYLDGSTKDRAAEVDRFQA 712

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+ P       + G GLNL    + ++ F  WW+       +E     R  + G ++ V 
Sbjct: 713 GETPAFLISLKAGGVGLNLTA-ADTVIHFDPWWNPA-----VEAQATDRAHRIGQQKVVT 766

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++T++E +L   + K  + D  + +
Sbjct: 767 AYKLIARDTVEEKILALQQKKRALVDATIES 797


>gi|171915800|ref|ZP_02931270.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 18/202 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-VII 63
            K  RE   D QG            +K  Q+         E   K     K + L   ++
Sbjct: 681 DKRVREAIAD-QGIEKSQLIVLDALLKLRQVCCHPSLLKTESAKKVETSAKTEYLMDEML 739

Query: 64  EK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLLF 113
            +       I++   F S L  L++   +                  ++++  G +P+  
Sbjct: 740 PELIEEGRRILIFSQFTSMLDILERMLKERGIRYVKLTGSTEDRMKPVEQFQNGDMPVFL 799

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+ L    + ++ +  WW+       IE     R  + G K+ VFV+ LI Q
Sbjct: 800 ISLKAGGVGITLTA-ADTVIHYDPWWNPA-----IEAQATDRAYRIGQKKPVFVHKLICQ 853

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TI+E +++  R KS + + LL
Sbjct: 854 GTIEERIVEMQRRKSALINGLL 875


>gi|209696433|ref|YP_002264364.1| putative helicase [Aliivibrio salmonicida LFI1238]
 gi|208010387|emb|CAQ80731.1| putative helicase [Aliivibrio salmonicida LFI1238]
          Length = 1284

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 21/208 (10%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y   ++E   +L+   +       +   K  Q+        +    +     K+   + 
Sbjct: 1067 AYEAVRKESLANLKSASSRGVVEVFAALTKLRQICCDVSLVFD--SMQGEASTKLSEAQS 1124

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKI 109
            +IE+       ++V   F   L R      +               +    I  + +G  
Sbjct: 1125 LIEEALDGDHKVLVFSQFVGVLKRFSAQLTESNISFSYLDGKLSTKQRQAAIDSFKDGTN 1184

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++    WW+       +E     R  + G ++ V VY 
Sbjct: 1185 SVFLISLKAGGTGLNLTE-ADTVIHIDPWWNPA-----VEDQASDRAYRMGQQKPVTVYR 1238

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+ ++TI+E ++     K  + D +L+A
Sbjct: 1239 LVTKDTIEEKIIALHHDKRDLADQVLSA 1266


>gi|194364294|ref|YP_002026904.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194347098|gb|ACF50221.1| Non-specific serine/threonine protein kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1104

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++   +    +   +       +K  Q+         E   +     K+
Sbjct: 863  LYETVRAAMEKQVREAISDSGLARSHIRVLDALLKLRQVCCDPRLLPGETPARNAGSAKL 922

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNE 106
            + L  ++         I++   F   LA + +                      +Q + +
Sbjct: 923  ELLREMLPSMVEEGRRILLFSQFTGMLALIAQALDGLGLAYVTLTGDTQDRVTPVQRFMQ 982

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++PL      + G GLNL    + ++ F  WW+        E     R  + G ++ VF
Sbjct: 983  GEVPLFLISLKAGGVGLNLTA-ADTVIHFDPWWNPAA-----ENQASDRAHRIGQQQPVF 1036

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA  +I+E + +    K+ + + +L  
Sbjct: 1037 VYRLIAAGSIEERIAELQERKAMLAESILEG 1067


>gi|256375189|ref|YP_003098849.1| Non-specific serine/threonine protein kinase [Actinosynnema mirum DSM
            43827]
 gi|255919492|gb|ACU35003.1| Non-specific serine/threonine protein kinase [Actinosynnema mirum DSM
            43827]
          Length = 1028

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 22/210 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   + G   +           K  Q+ N       +         K+  LE
Sbjct: 798  LYQAVLDDMLAKVDGSEGQERRGLVLASLSKLKQVCNHPAQLLGDGSRVAGRSGKVNRLE 857

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-E 106
             ++E+   +    +    F    + L                 G         ++ +  E
Sbjct: 858  EVLEEVLADGDKALCFTQFTEFGSLLAPHLSARFDTDVLFLHGGTPKRARDAMVERFQGE 917

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL    N ++    WW+       +E     R  + G +R V 
Sbjct: 918  GGPSVFLLSLKAGGTGLNLTA-ANHVIHLDRWWNPA-----VEDQATDRAFRIGQRRHVQ 971

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V   +   T++E + + +  K  +  +++ 
Sbjct: 972  VRKFVCAGTVEERIDRMVEQKRGLARMVVG 1001


>gi|300909460|ref|ZP_07126921.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
 gi|300893325|gb|EFK86684.1| SNF2 domain protein [Lactobacillus reuteri SD2112]
          Length = 451

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 8/198 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 254 IYDELNAQLVVSAQGKQIDALNAASLSNKLCQMANGCV-YDDQQQIIQIHQRKLDALEDL 312

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  DL +++          K P  IQ+WN GKIPL   HPAS GHG
Sbjct: 313 VEAANGKPVLVAYWFKHDLIQIK--SRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHG 370

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ GG  L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L 
Sbjct: 371 LNLQAGGATLIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILA 425

Query: 183 RLRTKSTIQDLLLNALKK 200
            L+ K   Q  L+NA+K 
Sbjct: 426 ALKRKDKTQLALINAVKA 443


>gi|331697415|ref|YP_004333654.1| SNF2-like protein [Pseudonocardia dioxanivorans CB1190]
 gi|326952104|gb|AEA25801.1| SNF2-related protein [Pseudonocardia dioxanivorans CB1190]
          Length = 1053

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++G +  A   N  +   K  Q+ N       +         K+  LE
Sbjct: 806  LYRTVVDDMLDRIEGTDGIARRGNVLAAMAKLKQVCNHPAQLLHDGSPIGRRSGKVTRLE 865

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
             I+E        ++    +                +       G    +    ++ +   
Sbjct: 866  EILESILAEGDKVLCFTQYAEFASMLVPHLSGRFDQEVLYLHGGTPKKRRDEMVERFQSP 925

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P +      + G GL L    + +V    WW+       +E     R  + G +R V 
Sbjct: 926  DGPAIFLLSLKAGGTGLTLTA-ASHVVHLDRWWNPA-----VENQATDRAFRIGQRRNVQ 979

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V  L+   T++E +   + +K  +   ++   +
Sbjct: 980  VRTLVCPGTVEERIDDLITSKKALSGKVIGDGE 1012


>gi|323487763|ref|ZP_08093021.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
 gi|323398497|gb|EGA91285.1| non-specific serine/threonine protein kinase [Planococcus donghaensis
            MPA1U2]
          Length = 1047

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 2    KQYH----KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + +++ +  L  +          +   +  QL      + E          K
Sbjct: 824  KLYAAYLAELKQDAFKHLNKDSFQKNRIRILAGLTRLRQLCCHPALFVEGYD---GGSAK 880

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
               L  ++ +       ++V   F   L                        +     + 
Sbjct: 881  FDQLMELLTECRATGRRVLVFSQFTQMLGIIGNQLAKEGVPYFYLDGQTPPQERVELCRR 940

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + +V + LWW+    Q         R  + G ++
Sbjct: 941  FNEGQGELFLISLKAGGTGLNLT-GADTVVLYDLWWNPAVEQ-----QAADRAHRMGQEK 994

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V  LIA+ TI+E + +    K  + D ++
Sbjct: 995  EVQVVRLIAKGTIEEKINELQMKKKNLIDDVI 1026


>gi|229824793|ref|ZP_04450862.1| hypothetical protein GCWU000182_00142 [Abiotrophia defectiva ATCC
            49176]
 gi|229791122|gb|EEP27236.1| hypothetical protein GCWU000182_00142 [Abiotrophia defectiva ATCC
            49176]
          Length = 1073

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 5    HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
               ++++  ++             +   +  Q+      + E     E    K+  L  +
Sbjct: 857  EDMKKKINNEINKNGFEKSRMMILASLTRLRQICCHPSTFLENY---EGGSGKLSLLLQL 913

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            ++    +   I+V   F S L                      + +    ++ +N G   
Sbjct: 914  VQNAVESGHRILVFSQFTSMLNLVEEEFKKLKISYYYLDGSTPIAQRSEDVKAFNNGSRE 973

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G ++++ +  WW+       +E     R  + G K +V V  L
Sbjct: 974  VYLISLKAGGTGLNL-VGADMVIHYDPWWNPA-----VEDQATDRVYRIGQKNSVNVVKL 1027

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I + TI+E + +    K  + D ++ A +
Sbjct: 1028 ITKGTIEEKIYKLQEKKKNLADSVIKAGE 1056


>gi|318081201|ref|ZP_07988533.1| helicase [Streptomyces sp. SA3_actF]
          Length = 770

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
            Y    RE    ++     +             Q+ N    Y     +         K+ 
Sbjct: 541 LYEAVVRESLAAIESAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 600

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
           AL+ ++         ++V   +      L                G  +D     +  + 
Sbjct: 601 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVDARDQLVDRFQ 660

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+       +E     R  + G  R V
Sbjct: 661 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEDQATDRAHRIGQTRHV 714

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ L+A+ T+++ +   +  K  + D +L 
Sbjct: 715 QVHRLLAEGTVEDRIADLVAGKQALADAVLG 745


>gi|318057744|ref|ZP_07976467.1| helicase [Streptomyces sp. SA3_actG]
          Length = 939

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
            Y    RE    ++     +             Q+ N    Y     +         K+ 
Sbjct: 710 LYEAVVRESLAAIESAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 769

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
           AL+ ++         ++V   +      L                G  +D     +  + 
Sbjct: 770 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVDARDQLVDRFQ 829

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+       +E     R  + G  R V
Sbjct: 830 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEDQATDRAHRIGQTRHV 883

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ L+A+ T+++ +   +  K  + D +L 
Sbjct: 884 QVHRLLAEGTVEDRIADLVAGKQALADAVLG 914


>gi|284053180|ref|ZP_06383390.1| SNF2-related helicase [Arthrospira platensis str. Paraca]
          Length = 1068

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-------DEEKHWKEVHD 53
             Y K   E   +++               VK  Q+ N  +          E       + 
Sbjct: 825  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKEMPTLNPGYS 884

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCT 100
             K++ L  ++E+  +     ++   F              L R       G    +    
Sbjct: 885  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREVLFLYGGSRKLQREQM 944

Query: 101  IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+       +E     R  +
Sbjct: 945  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFR 998

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G  R V V+  +   T++E +   + +K  + + ++++ +
Sbjct: 999  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSSGE 1039


>gi|296163436|ref|ZP_06846189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295886324|gb|EFG66189.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1117

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y         ++   +  + +   +       +K  Q+          +  +     K+
Sbjct: 873  LYETVRAAMHEKVRAAVTAKGLARSHIVVLEALLKLRQVCCDPRLVKISQAARIKESAKL 932

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
              L  ++ +       I++   F   L  +  A  +                  I+ + +
Sbjct: 933  ALLLEMLPELIEEGRRILLFSQFTGMLELIAAALNEAGIPYVVLTGDTTDRRTPIRRFQQ 992

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +PL      + G GLNL    + ++ +  WW+       +E     R  + G  + VF
Sbjct: 993  RAVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAHRLGQDKPVF 1046

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VY LI   +++E ++     K+ + D +L+    
Sbjct: 1047 VYKLITAGSVEEKIVAMQEQKAALADAILSEDAA 1080


>gi|119943907|ref|YP_941587.1| SNF2-related protein [Psychromonas ingrahamii 37]
 gi|119862511|gb|ABM01988.1| SNF2-related protein [Psychromonas ingrahamii 37]
          Length = 1080

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 22/215 (10%)

Query: 3    QYHKFQ---RELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +    E   DL  E   A +        +K  Q          E         K+
Sbjct: 855  LYESIRVTMEEKVRDLLKEKGLARSRIEFLDALLKLRQACCDPRLVKLEHAKNIKSSAKL 914

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
              L  ++ +       I++   F   L  ++++                     I ++  
Sbjct: 915  DYLMGVLPEMIEEGRRILIFSQFAQMLGLIEQSLLASDIDFVKLTGQTRNRSEVIDKFQN 974

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G +P+      + G GLNL    + ++ +  WW+       +E     R  + G  + VF
Sbjct: 975  GNVPIFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAYRIGQDKPVF 1028

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY LI ++T++E VL     K  + D +  + ++E
Sbjct: 1029 VYKLICEHTVEERVLALQTRKQKLADSVYGSEQEE 1063


>gi|227872572|ref|ZP_03990908.1| helicase [Oribacterium sinus F0268]
 gi|227841573|gb|EEJ51867.1| helicase [Oribacterium sinus F0268]
          Length = 449

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y + ++ +   L+   I A ++   T K  Q ANGA+ YDE+K    +HD K++   
Sbjct: 248 LKAYQELEKNMVLSLEESEITAVSAGVLTNKLSQCANGAI-YDEDKVVNHIHDCKLERFT 306

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPA 117
            ++E+ N    +V Y+F  D  R+ KA  +     ++   P   ++WN+GKI +L AHPA
Sbjct: 307 ELVEELNGESALVFYNFKHDKDRILKALEKSGLEVREFKSPKDEEDWNKGKIDILLAHPA 366

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S  +G+NLQYGG  +++FSL W  E +          R  + G ++ V V+ L+  +T+D
Sbjct: 367 STAYGINLQYGGRNIIWFSLPWSYELY-----AQANARLFRQGQEKPVIVHELLCTDTVD 421

Query: 178 ELVLQRLRTKSTIQDLLLNALKKET 202
             + + L  K   Q+ +L ALK   
Sbjct: 422 HDIKKSLSEKGQNQEDVLRALKARL 446


>gi|296445439|ref|ZP_06887396.1| SNF2-related protein [Methylosinus trichosporium OB3b]
 gi|296257005|gb|EFH04075.1| SNF2-related protein [Methylosinus trichosporium OB3b]
          Length = 890

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     EL   L+  + +        +  ++  Q+ N    +  +  ++     K   L
Sbjct: 656 LYEVAVDELEQRLKQADDDIARRGLVLAMLMRLKQICNHPSQWLSDGAYEPAQSGKFARL 715

Query: 60  EVI--IEKANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN- 105
             I     +    ++V   F   +A           R          + K    ++++  
Sbjct: 716 AEIAETVASRQEKLLVFTQFKEIIAPLERLLASVFGRSGLVLHGDTPVAKRKDLVKKFQE 775

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  IP       + G GL L    + +  F  WW+       +E     R  + G KR V
Sbjct: 776 DETIPFFVLSLKAGGSGLTLTA-ASHVAHFDRWWNPS-----VENQATDRAFRIGQKRNV 829

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+  + + TI+E + Q + +K  +   +L   ++
Sbjct: 830 LVHKFVCRGTIEERIDQLIESKRQLAQDVLGGGQE 864


>gi|209525614|ref|ZP_03274152.1| Non-specific serine/threonine protein kinase [Arthrospira maxima
            CS-328]
 gi|209493947|gb|EDZ94264.1| Non-specific serine/threonine protein kinase [Arthrospira maxima
            CS-328]
          Length = 1058

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-------DEEKHWKEVHD 53
             Y K   E   +++               VK  Q+ N  +          E       + 
Sbjct: 815  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKESPTLNPSYS 874

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCT 100
             K++ L  ++E+  +     ++   F              L R       G    +    
Sbjct: 875  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREILFLYGGTRKLQREQM 934

Query: 101  IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+       +E     R  +
Sbjct: 935  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFR 988

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G  R V V+  +   T++E +   + +K  + + ++++ +
Sbjct: 989  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSSGE 1029


>gi|158339003|ref|YP_001520180.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
 gi|158309244|gb|ABW30861.1| SNF2 family helicase [Acaryochloris marina MBIC11017]
          Length = 1091

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIK 57
            K Y    +E    +             +  VK  Q+ N    Y  +E          K+K
Sbjct: 853  KLYQTTVQESLDAVDAAKGIQRRGIILATLVKLKQICNHPAQYLHEETLDLDLQRSGKLK 912

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEW 104
             L+ ++E+        ++   F              L R       G +  +    I  +
Sbjct: 913  RLQEMLEELLDEGDRALIFTQFAELGKLLQQYLQTKLQRETLLLYGGSSKKQRESMIDRF 972

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                    +      + G GLNL    N +  F  WW+       +E     R  + G  
Sbjct: 973  QHDPQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQT 1026

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R V V+  +   T++E + ++L +K  + + ++ A +
Sbjct: 1027 RNVQVHKFVCTGTLEERIHEQLESKKALAEQVVGAGE 1063


>gi|168701069|ref|ZP_02733346.1| Non-specific serine/threonine protein kinase [Gemmata obscuriglobus
           UQM 2246]
          Length = 894

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     +L   L+G +         ++ ++  Q+ N          +      K + L 
Sbjct: 660 LYQHAVDDLARQLEGTDGIQRRGIVLAQLMRLKQICNHPAQVAGTGDYAADRSGKFRRLA 719

Query: 61  VIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E+  +    ++V   F                R       G ++ K    + ++  E
Sbjct: 720 EIAEEIASRQEKVLVFTQFREIADPLAEFLATLFGRSGLVLHGGTSVKKRKEFVDQFQRE 779

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + +V F  WW+       IE     R  + G K+ V 
Sbjct: 780 DGPPFFVLSLKAGGTGLNLTAAAH-VVHFDRWWNPA-----IENQATDRAFRIGQKKNVL 833

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  I + T++E + + +  KS + D  +  
Sbjct: 834 VHKFICRGTVEERIDEMIARKSRVADEAIGG 864


>gi|304406180|ref|ZP_07387837.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
 gi|304344764|gb|EFM10601.1| SNF2 helicase associated domain protein [Paenibacillus
            curdlanolyticus YK9]
          Length = 1110

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K ++E    L  ++   +     +   +  Q+      + E+         K
Sbjct: 887  KLYTAYLAKLRQETLKHLDEDDFGRQRIKILAGITRLRQICCHPGLFVEDYR---GGSAK 943

Query: 56   IKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQE 103
            ++ L  I+   +     +++   F   L  ++                   ++     Q 
Sbjct: 944  LEQLLDIVEDCRGAGKRMLLFSQFTGMLGIIREELGVRGVPLFYLDGSTPPEERAELCQR 1003

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G + ++ + +WW+    Q         R  + G K 
Sbjct: 1004 FNAGEKEVFLISLKAGGTGLNLT-GADTVIMYDMWWNPAVEQ-----QAADRAHRIGQKN 1057

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ T+++ +      K  + D ++ 
Sbjct: 1058 VVQVIRLVAQGTVEDKMHALQERKKQLIDEVIQ 1090


>gi|257869721|ref|ZP_05649374.1| Snf2 family protein [Enterococcus gallinarum EG2]
 gi|257803885|gb|EEV32707.1| Snf2 family protein [Enterococcus gallinarum EG2]
          Length = 1074

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 26/221 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  + R++  ++   +  A      +  +   +  Q+      + E+    E    K+
Sbjct: 849  KIYLAYLRQMREEIAQMDTAAFRKNRISILAGLTRLRQICCDPRLFVEDY---EGTSGKL 905

Query: 57   KALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            + ++ +I+  K N   +++   F S L+ ++                    +    +  +
Sbjct: 906  EQVKDLIQAAKENGRRVLLFSQFTSMLSIIEEELAQEGIETFYLRGSTPPQERLSMVDAF 965

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ 
Sbjct: 966  NNGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRIGQKKV 1019

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ +IA+ TI+E +    + K  +   ++   + +   +
Sbjct: 1020 VEVWRMIAEGTIEERMDALQQEKRELFQKVIQGNEAQLNQM 1060


>gi|91793580|ref|YP_563231.1| SNF2-related [Shewanella denitrificans OS217]
 gi|91715582|gb|ABE55508.1| SNF2-related [Shewanella denitrificans OS217]
          Length = 1088

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 18/206 (8%)

Query: 7    FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +++L      + + + +       +K  Q          E+      + K+  L   + 
Sbjct: 874  MEKKLRELFAQKGVSSSHIEFLDALLKLRQACCDPRLVKLEQAQNVKSNAKLTWLTENLT 933

Query: 65   KA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFA 114
            +       I++   F   L+ +++   +                  I ++ EG+ P+   
Sbjct: 934  EMVEEGRKILIFSQFTGMLSLIEEELQRLNIDYSLLTGKTRSRQTQIDDFQEGRKPVFLI 993

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ F  WW+        ER    R  + G    VFVY LIAQ 
Sbjct: 994  SLKAGGTGLNLTT-ADTVIHFDPWWNPAA-----ERQATDRAHRIGQLNPVFVYKLIAQG 1047

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKK 200
            T++E + +  + K  + D +L+  ++
Sbjct: 1048 TVEEKIHEMQQHKQGLADSILSDKEQ 1073


>gi|269120031|ref|YP_003308208.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613909|gb|ACZ08277.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 11/206 (5%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y + ++E+  +L   GE I+  ++A+ T K LQL+NGAVY ++ K   EVH+ KI+A 
Sbjct: 254 KAYDELEKEMILELIETGETIDVTSAAALTNKLLQLSNGAVYDEDRKVH-EVHNCKIEAF 312

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHP 116
             ++E  N  P +V Y F  D  R++KA  + +   ++      + +WN  +I +L +HP
Sbjct: 313 MELVEALNGQPALVFYSFQHDKDRIKKALSKLKLRVRELKTDQDVTDWNNREIDILLSHP 372

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           AS  +GLNLQ GGN +++F L W LE +Q         R  + G    VF+++LI + T 
Sbjct: 373 ASSAYGLNLQRGGNHIIWFGLNWSLELYQ-----QANKRLHRQGQTEKVFIHHLITEGTR 427

Query: 177 DELVLQRLRTKSTIQDLLLNALKKET 202
           D  V+  L  K  IQ+ LLN+LK   
Sbjct: 428 DTDVMAALGDKGDIQESLLNSLKARI 453


>gi|38637850|ref|NP_942824.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527188|gb|AAP85938.1| putative helicase, superfamily II [Ralstonia eutropha H16]
          Length = 1106

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       Q ++   +  + +   +       +K  Q+         ++  +     K+
Sbjct: 862  LYETVRAAMQEKVRAAVAAKGLARSHIIVLEALLKLRQVCCDPRLVKIKEAARIKESAKL 921

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNE 106
              L  ++ +       I++   F S L  +                        ++ + +
Sbjct: 922  DLLLHMLPELIEEGRRILLFSQFTSMLDLIAAALRNAGIPYVMLTGDTTDRITPVERFQQ 981

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++PL      + G GLNL    + ++ +  WW+       +E     R  + G  + VF
Sbjct: 982  GEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAHRLGQDKPVF 1035

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VY LI   +++E ++     K+ + + +L+    
Sbjct: 1036 VYKLITGGSVEEKIVAMQAQKAALAEAILSEDAA 1069


>gi|242280237|ref|YP_002992366.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
 gi|242123131|gb|ACS80827.1| SNF2-related protein [Desulfovibrio salexigens DSM 2638]
          Length = 1069

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 21/206 (10%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKALE 60
             + + ++  D+  + +     +     +K  Q+         D       +   K  A +
Sbjct: 850  KRLKDQVLRDVDEKGMAKSQMSILDALLKLRQICCHPRLLKLDMPGLSTNLPSGKFDAFK 909

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKI 109
             +I         ++V   F   L  ++           +  G + D+     +  +   I
Sbjct: 910  DLIFDIVEGGHKVLVFSQFVQMLHVIRSWLTIKDIPFAYLDGSSKDRFEQVDRFNDSPDI 969

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL    + ++ +  WW+       +E     R  + G KR VF Y 
Sbjct: 970  PIFLISLKAGGTGLNLTS-ADYVIHYDPWWNPA-----VENQATDRTHRIGQKRQVFAYK 1023

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            +I QNT++E +L     K ++ D ++
Sbjct: 1024 MICQNTVEEKILGLQEMKKSVADAII 1049


>gi|108763874|ref|YP_633501.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108467754|gb|ABF92939.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1083

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 23/217 (10%)

Query: 3    QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y +   E    +              +  +  ++  Q+                   K+
Sbjct: 857  LYREVLEESRRKVHESIEKVGFKRSRVSILAALMRLRQVCCDPRLLKMPPGTLMPPSAKV 916

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWN 105
            +    ++E   A     +V   F   L  L         +  +  GRT D+     +  N
Sbjct: 917  ERFLQLVEDLVAEGHRALVFSQFTEMLELLKQEADKKGLRYLYLDGRTKDRMGKVDEYNN 976

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL F    + G GLNL    + ++ F  WW+       +E     R  + G  RAV
Sbjct: 977  PDGPPLFFISLKAGGTGLNLTA-ADYVIHFDPWWNPA-----VEDQATDRTHRIGQTRAV 1030

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              Y LI + T++E +L   R K  +   +L     E 
Sbjct: 1031 ISYKLITRGTVEEKILALQRRKRELAAGVLGGDGDEM 1067


>gi|24373219|ref|NP_717262.1| Snf2 family protein [Shewanella oneidensis MR-1]
 gi|24347445|gb|AAN54706.1|AE015611_4 Snf2 family protein [Shewanella oneidensis MR-1]
          Length = 1070

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++      + +   +       +K  Q          E+  K  ++ K+
Sbjct: 848  LYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 907

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L   + +       I++   F S L  +++                      I ++ E
Sbjct: 908  NWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQVQIDKFQE 967

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        ER    R  + G +  VF
Sbjct: 968  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ERQATDRAHRIGQENPVF 1021

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1022 VYKLIAEGTVEEKIQEMQQHKQGLADSILEG 1052


>gi|217974039|ref|YP_002358790.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
 gi|217499174|gb|ACK47367.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS223]
          Length = 1073

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K   + K+
Sbjct: 851  LYESIRLVMEKKLRDLFATQGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       I++   F S L+ ++                       I ++ E
Sbjct: 911  DWLKQNLPEMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQIDKFQE 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K ++ D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQSLADSILEG 1055


>gi|152999998|ref|YP_001365679.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
 gi|151364616|gb|ABS07616.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS185]
          Length = 1073

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K   + K+
Sbjct: 851  LYESIRLVMEKKLRDLFATQGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       I++   F S L+ ++                       I ++ E
Sbjct: 911  DWLKQNLPEMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQIDKFQE 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K ++ D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQSLADSILEG 1055


>gi|302607772|emb|CBW45684.1| putative helicase [Streptomyces pristinaespiralis]
          Length = 936

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 86/218 (39%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKAL 59
            Y K  +E+   ++     A +           Q+ N   ++ ++          K++ L
Sbjct: 710 LYRKHAQEVMDRIRASQGIARSGLVLKLLTGLKQICNHPAHFLKQDDTALSGRSGKLELL 769

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   + +    L++              G  + +    +Q + +G
Sbjct: 770 DELLDTITAEGGAVLVFTQYVAMAKLLERHLRERGIGAQLLHGGTPVPRREELVQRFQDG 829

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+       +E     R  + G  R+V V
Sbjct: 830 EVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEAQATDRAYRIGQTRSVQV 883

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ TI++ +   L +K  + D +L + +     +
Sbjct: 884 HKMIAEGTIEDRIAALLESKKDLADAVLGSGEGALTEL 921


>gi|297196538|ref|ZP_06913936.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153265|gb|EFH32249.1| SNF2/RAD54 family helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 923

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 86/218 (39%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKAL 59
            Y K  +E+   ++     A +           Q+ N   ++ ++          K++ L
Sbjct: 697 LYRKHAQEVMDRIRASQGIARSGLVLKLLTGLKQICNHPAHFLKQDDTALSGRSGKLELL 756

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++        ++V   + +    L++              G  + +    +Q + +G
Sbjct: 757 DELLDTITAEGGAVLVFTQYVAMAKLLERHLRERGIGAQLLHGGTPVPRREELVQRFQDG 816

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL    + +V +  WW+       +E     R  + G  R+V V
Sbjct: 817 EVPVFLLSLKAAGTGLNLTR-ADHVVHYDRWWNPA-----VEAQATDRAYRIGQTRSVQV 870

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + +IA+ TI++ +   L +K  + D +L + +     +
Sbjct: 871 HKMIAEGTIEDRIAALLESKKDLADAVLGSGEGALTEL 908


>gi|119512991|ref|ZP_01632051.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
 gi|119462365|gb|EAW43342.1| SWI/SNF family helicase [Nodularia spumigena CCY9414]
          Length = 1404

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            M  Y   +R+    L   + EA        ++ +K  +          +    E+   K+
Sbjct: 1182 MAFYEALRRQAISKLTESDAEAGKKHLQVLAEIMKLRRACCNPSLVMPDT---ELPSSKL 1238

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            +    ++ +   N    +V   F   L  ++    Q             + +    +  +
Sbjct: 1239 QLFGEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTPVAERKKRVDAF 1298

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G   +      + G GLNL    + ++    WW+       +E     R  + G +R 
Sbjct: 1299 QAGTGDVFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQQRP 1352

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y L+A++TI++ ++     K  + D LL  
Sbjct: 1353 VTIYRLVAKDTIEDKIVALHHHKRDLADTLLEG 1385


>gi|225166221|ref|ZP_03727929.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
 gi|224799535|gb|EEG18056.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
          Length = 552

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 27/216 (12%)

Query: 2   KQY----HKFQRELY-CDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           + Y     + +REL   +  G +  A    + ++ ++  Q+         +         
Sbjct: 326 RLYRDWQERSERELLDLETGGASESALRLATLTQLLRLRQICCDPRLVAPDSAA-PADSA 384

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQ 102
           K++A   ++ +   +   ++V   F S          +            T  +    + 
Sbjct: 385 KLEAFRELLAEAIDDGHRLLVFSQFTSLLALLRAEFDEQQLPYCYLDGTMTPRQRQAEVD 444

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N    IPL      + G GLNL  G + +V F  WW+        E     R  + G 
Sbjct: 445 RFNTNDDIPLFLISLKAGGTGLNLT-GADTVVHFDPWWNPAA-----EAQATDRAHRIGQ 498

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V  Y LI   T++E VLQ    K  +   +  A
Sbjct: 499 TRVVTSYKLICTGTVEEKVLQLQEQKRALLANVFEA 534


>gi|126173709|ref|YP_001049858.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS155]
 gi|125996914|gb|ABN60989.1| SNF2-related protein [Shewanella baltica OS155]
          Length = 1073

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K   + K+
Sbjct: 851  LYESIRLVMEKKLRDLFATQGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       I++   F S L+ ++                       I ++ E
Sbjct: 911  DWLKQNLPEMVQEGRKILIFSQFTSMLSLIEAELVDLGLEYSKLTGQTRLRQAQIDKFQE 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K ++ D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQSLADSILEG 1055


>gi|209363583|ref|YP_002268001.1| phage helicase [Staphylococcus phage phi2958PVL]
 gi|208973084|dbj|BAG74400.1| phage helicase [Staphylococcus phage phi2958PVL]
          Length = 423

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 225 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 398 YKALQNKELTQEELMKAIKARI 419


>gi|291569923|dbj|BAI92195.1| SNF2 helicase homolog [Arthrospira platensis NIES-39]
          Length = 1068

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-------DEEKHWKEVHD 53
             Y K   E   +++               VK  Q+ N  +          E       + 
Sbjct: 825  LYQKLVDESLSEIESSTGIQRRGMILGLLVKLKQVCNHPLLLGAKTKAKKEMPTLNSAYS 884

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCT 100
             K++ L  ++E+  +     ++   F              L R       G    +    
Sbjct: 885  GKLQRLNEMLEELISEGDRALIFTQFAEWGKLLKPYLEAKLNREVLFLYGGSRKLQREQM 944

Query: 101  IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     P++     + G GLNL    N +  F  WW+       +E     R  +
Sbjct: 945  VDRFQQDPQGPPVMILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFR 998

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G  R V V+  +   T++E +   + +K  + + ++++ +
Sbjct: 999  IGQTRNVQVHKFVCTGTLEEKIHDLIESKQALAEQVVSSGE 1039


>gi|296125777|ref|YP_003633029.1| SNF2-related protein [Brachyspira murdochii DSM 12563]
 gi|296017593|gb|ADG70830.1| SNF2-related protein [Brachyspira murdochii DSM 12563]
          Length = 1031

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 22/215 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++ +   +R+ +              S   +  Q+        ++   +     K     
Sbjct: 819  IEIFETVKRKGFAQ------SHIEIFSALTRLRQVCCHPRLMHDDLRGESHTSGKFNMFI 872

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIP 110
             +I +  +    ++V   F   L  ++          F            +  +N G+ P
Sbjct: 873  EMIREAISGGHSVLVFSSFTRMLNLMRSAFKKLGIDYFYLDGATKDRMDLVHRFNAGEAP 932

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GL L    + ++ + LWW+       +E     R  + G KR V  Y L
Sbjct: 933  VFLLSLKAAGTGLTLTQ-ADTVMHYDLWWNPA-----VEDQATDRAYRIGQKRVVTNYKL 986

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + TI+E +L+    K  + D ++     +   +
Sbjct: 987  ITRGTIEEKILELQNKKRVLIDTVVGDSMGDINKL 1021


>gi|160874619|ref|YP_001553935.1| non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|160860141|gb|ABX48675.1| Non-specific serine/threonine protein kinase [Shewanella baltica
            OS195]
 gi|315266860|gb|ADT93713.1| SNF2-related protein [Shewanella baltica OS678]
          Length = 1073

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K   + K+
Sbjct: 851  LYESIRLVMEKKLRDLFATQGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       I++   F S L+ ++                       I ++ E
Sbjct: 911  DWLKQNLPEMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQIDKFQE 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K ++ D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQSLADSILEG 1055


>gi|21227581|ref|NP_633503.1| SWF/SNF family helicase [Methanosarcina mazei Go1]
 gi|20905965|gb|AAM31175.1| SWF/SNF family helicase [Methanosarcina mazei Go1]
          Length = 1089

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 73/212 (34%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y     ++   ++G            S   +  Q+ N    + ++         K+  L
Sbjct: 857  LYAAVLEDIREAIEGAEEGIQRKGIILSALSRLKQVCNHPAQFLKDNSTIPGRSGKLARL 916

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNE 106
              +++    N    +V   F      +++               G    +    ++ + E
Sbjct: 917  TEMLDVVLENGEKALVFTQFAEMGKMVKEHLQASFGCEVLFLHGGVPRKQRDRMLERFQE 976

Query: 107  G--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            G   +P+      + G GLNL  G N +  F  WW+       +E     R  + G K+ 
Sbjct: 977  GKEYLPIFVLSLKAGGTGLNLT-GANHVFHFDRWWNPA-----VENQATDRAFRIGQKKN 1030

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V V+  I   T++E + + +  K  + + ++ 
Sbjct: 1031 VEVHKFICAGTLEEKIDEIIERKVQVAENVVG 1062


>gi|261854732|ref|YP_003262015.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
 gi|261835201|gb|ACX94968.1| SNF2-related protein [Halothiobacillus neapolitanus c2]
          Length = 1086

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 26/215 (12%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y         ++   +    +   +       +K  Q+          K  +       
Sbjct: 855  LYETVRSAMDEKVRQSIDSMGLARSHIVILDALLKLRQVCCDPRLLPSSKTGQSAKRPTQ 914

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQ 102
              K+  L  ++ +       I+V   F S LA + +                      ++
Sbjct: 915  SAKLDLLLTMLPELVDEGRRILVFSQFTSMLALISEALTKAKLAHSMLTGETRDRETVVR 974

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++  G  P+      + G GLNL    + ++ +  WW+        E     R  + G  
Sbjct: 975  QFQNGDTPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQATDRAHRIGQT 1028

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R VFVY L+ + +I+E +L     K+ + + +L+ 
Sbjct: 1029 RQVFVYKLVTEGSIEEKILALQDKKAKLAEGVLSG 1063


>gi|223986447|ref|ZP_03636451.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
 gi|223961599|gb|EEF66107.1| hypothetical protein HOLDEFILI_03763 [Holdemania filiformis DSM
           12042]
          Length = 471

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 17/210 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y     E + +L    + A N  ++ ++  QL  G +  D+    ++V + K+  LE
Sbjct: 261 MKLYKNLVDESFAELSDGEVTATNVLTRLLRLNQLTGGFICSDDSSKAEQVSNAKMSVLE 320

Query: 61  VIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            I++        +++   F  +L           ++ +   G   ++D    Q  N+ ++
Sbjct: 321 DIVDASLQEGKKLVIIARFIPELHAICKMLGKKGIRHSLIMGGVNNRDEQVAQFQNDPEV 380

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      +AG K      Y
Sbjct: 381 SVFVGQIATAGMGITLTA-ASTMVFYSLDYSMSNFEQTKARI-----HRAGQKFPCTYLY 434

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           L A+ TID  VL+ L++K+++   L++  +
Sbjct: 435 LTAEGTIDTKVLKALKSKASLAKTLVDDYR 464


>gi|257432448|ref|ZP_05608811.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257283327|gb|EEV13459.1| SNF2 family protein [Staphylococcus aureus subsp. aureus E1410]
          Length = 455

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|317131242|ref|YP_004090556.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
 gi|315469221|gb|ADU25825.1| SNF2-related protein [Ethanoligenens harbinense YUAN-3]
          Length = 1081

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 23/210 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y      +  +L G    +      +   +  QL      Y E+         K++  
Sbjct: 855  KLYMANLASIRQELTGSLQNSNKLIVLAMLTRLRQLCCDPSLYYEDYT---GGSAKLELC 911

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
              ++     +   +++   F S L+ +                  + ++       +N  
Sbjct: 912  MELLRSVTESGHKVLLFSQFTSMLSIIADRLTGDGIGYYVLKGSTSKEERARLTTRFNND 971

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +I++ +  WW++             R  + G K +V V
Sbjct: 972  DTPVFLISLKAGGTGLNLTA-ADIVIHYDPWWNVSAQ-----NQATDRAHRIGQKSSVQV 1025

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++TI+E +L+  + K  + D +++ 
Sbjct: 1026 YKLIAKDTIEEKILKLQQDKLKLADSVISE 1055


>gi|288553478|ref|YP_003425413.1| SNF2 helicase [Bacillus pseudofirmus OF4]
 gi|288544638|gb|ADC48521.1| SNF2 helicase [Bacillus pseudofirmus OF4]
          Length = 998

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 73/219 (33%), Gaps = 22/219 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   L   +     +       K  Q+ N    + +          K   L 
Sbjct: 767 LYQAVVDDILSRLNQVSQLERRALILKSLTKLKQICNHPAQFLKTDEVSRHDSRKWDELF 826

Query: 61  VIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            +IE  +     +++   +                +         T  K    I+ +  +
Sbjct: 827 ALIEDIHNRNEKVLIFSQYKEMGRLIAEELERRYQKDVPFLHGSLTRPKRQEAIERFQED 886

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++        + G GLNL    N ++ +  WW+       +E     R  + G  + V 
Sbjct: 887 PEVTAFVLSLKAGGVGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAFRIGQTKDVT 940

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V+ L+   T++E + + L  K ++ D +L A +++   +
Sbjct: 941 VHKLMTSGTLEERIDKMLTQKQSLADQVLQAGEQQVTEL 979


>gi|304311942|ref|YP_003811540.1| Predicted helicase [gamma proteobacterium HdN1]
 gi|301797675|emb|CBL45896.1| Predicted helicase [gamma proteobacterium HdN1]
          Length = 883

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   EL   L+  +            ++  Q+ N    +  +  WK     K   L 
Sbjct: 652 LYQRTVEELASALEKSDGVERKGLVLAFLMRFKQICNHPSQWLGDGTWKPADSGKFARLA 711

Query: 61  VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E        ++V   F                R       G  + K    ++ +  +
Sbjct: 712 EITETIAAKQEKVLVFTQFRETTAPLAAFLGNVFGREGLVLHGGTAVGKRRELVKRFQED 771

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP       + G GLNL    + ++ F  WW+       +E     R  + G  R V 
Sbjct: 772 EAIPFFVLSLKAGGTGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAWRIGQHRNVL 825

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  + + TI+E +   +R+K  +   +L  
Sbjct: 826 AHKFVCRGTIEERIDALIRSKQQLVQDVLEG 856


>gi|288962950|ref|YP_003453244.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
 gi|288915216|dbj|BAI76700.1| SNF2 family DNA/RNA helicase [Azospirillum sp. B510]
          Length = 1172

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 21/209 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALE 60
             +  RE     +G            +K  Q+         E   K V       K+  L 
Sbjct: 951  DQRVREEVAR-KGLARSHITILDALLKLRQVCCDPRLVKLESARKRVAKGAASAKLDRLL 1009

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIP 110
             ++ +  A+   I++   F S    ++                       +  +  G++P
Sbjct: 1010 EMLPELLADGRRILLFSQFTSMFDLMRPELERLAIPFVELTGDTRDRETPVNRFQAGEVP 1069

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY L
Sbjct: 1070 LFLISLKAGGTGLNLTA-ADTVIHYDPWWNPA-----VEDQATDRAHRIGQDKPVFVYKL 1123

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +   T++E ++Q    K  + + + +  +
Sbjct: 1124 VTTGTVEERMVQLQERKRRLGEAVYDQDR 1152


>gi|114048179|ref|YP_738729.1| SNF2-like protein [Shewanella sp. MR-7]
 gi|113889621|gb|ABI43672.1| SNF2-related protein [Shewanella sp. MR-7]
          Length = 1082

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++      + +   +       +K  Q          E+  K  ++ K+
Sbjct: 860  LYESIRLSMEKKIRELFASQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 919

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L   + +       I++   F S L  +++                      I ++ E
Sbjct: 920  NWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLDIDYSKLTGQTRLRQGQIDKFQE 979

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G +  VF
Sbjct: 980  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQENPVF 1033

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1034 VYKLIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|66395458|ref|YP_239852.1| ORF008 [Staphylococcus phage 2638A]
 gi|62635885|gb|AAX90996.1| ORF008 [Staphylococcus phage 2638A]
          Length = 452

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   I A + AS + K LQL+NGAV Y +++  + +HD K+  LE
Sbjct: 254 KLYDELEKHYILESEEDGTIVAQSGASLSQKLLQLSNGAV-YTDDESVRHLHDRKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   P++V Y+F  D  R+            D      W +GK+ +L AHPAS G
Sbjct: 313 EIIEESQGQPLLVFYNFKHDKERI-MERFDEVVTLGDESYKDRWIKGKVKILLAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQKGGHIIVWFGLTWSLELYQ-----QANARLYRQGQTHTTIIHHIMTDNTIDQKV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            Q L+ K   Q+ L+ A+K   
Sbjct: 427 YQALQNKELTQEDLMQAIKARI 448


>gi|113970955|ref|YP_734748.1| SNF2-like protein [Shewanella sp. MR-4]
 gi|113885639|gb|ABI39691.1| SNF2-related protein [Shewanella sp. MR-4]
          Length = 1082

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++      + +   +       +K  Q          E+  K  ++ K+
Sbjct: 860  LYESIRLSMEKKIRELFASQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 919

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L   + +       I++   F S L  +++                      I ++ E
Sbjct: 920  NWLSQNLPEMVQEGRKILIFSQFTSMLILIEELLQSLDIDYSKLTGQTRLRQGQIDKFQE 979

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G +  VF
Sbjct: 980  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQENPVF 1033

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1034 VYKLIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|66395597|ref|YP_239997.1| ORF009 [Staphylococcus phage 3A]
 gi|62635943|gb|AAX91054.1| ORF009 [Staphylococcus phage 3A]
          Length = 455

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|304409583|ref|ZP_07391203.1| SNF2-related protein [Shewanella baltica OS183]
 gi|307303941|ref|ZP_07583694.1| SNF2-related protein [Shewanella baltica BA175]
 gi|304352101|gb|EFM16499.1| SNF2-related protein [Shewanella baltica OS183]
 gi|306912839|gb|EFN43262.1| SNF2-related protein [Shewanella baltica BA175]
          Length = 1073

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  K   + K+
Sbjct: 851  LYESIRLVMEKKLRDLFATQGVGSSHIEFLDALLKLRQACCDPRLVKLEQAQKVKSNAKL 910

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L+  + +       I++   F S L+ ++                       I ++ E
Sbjct: 911  DWLKQNLPEMVQEGRKILIFSQFTSMLSLIEAELVDLGLDYSKLTGQTRLRQAQIDKFQE 970

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G  + VF
Sbjct: 971  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQDKPVF 1024

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K ++ D +L  
Sbjct: 1025 VYKLIAEGTVEEKIQEMQQHKQSLADSILEG 1055


>gi|237749385|ref|ZP_04579865.1| helicase [Oxalobacter formigenes OXCC13]
 gi|229380747|gb|EEO30838.1| helicase [Oxalobacter formigenes OXCC13]
          Length = 1125

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 24/221 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y    REL      E I                +K  Q+                   
Sbjct: 892  QTYES-VRELMDKKVQEEIAKLGIAHCQIIILEALLKLRQVCCDPRLLRGSAKKANTSSA 950

Query: 55   KIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEW 104
            K+  L  ++++        +V   F S L+ ++          +            I+ +
Sbjct: 951  KLNELMEMLDELLLEKRHILVFSQFTSMLSLIETELKNRSIPYEILTGDTTDRASAIRNF 1010

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +GK+ +      + G GLNL    + ++ +  WW+       +E     R  + G  + 
Sbjct: 1011 QDGKVSVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAWRIGQDKP 1064

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            VFVY LIA+ T++E + +  + K+ +   +L++ + + + +
Sbjct: 1065 VFVYKLIAKGTLEEKIQELQQRKADLATAMLSSGQAQHVQI 1105


>gi|21283134|ref|NP_646222.1| hypothetical protein MW1405 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483700|ref|YP_040924.1| hypothetical protein SAR1523 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|148267489|ref|YP_001246432.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393543|ref|YP_001316218.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282905864|ref|ZP_06313719.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282919229|ref|ZP_06326964.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282921765|ref|ZP_06329482.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927343|ref|ZP_06334961.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|21204574|dbj|BAB95270.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49241829|emb|CAG40521.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|147740558|gb|ABQ48856.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945995|gb|ABR51931.1| SNF2-related protein [Staphylococcus aureus subsp. aureus JH1]
 gi|282317039|gb|EFB47413.1| hypothetical protein SASG_00535 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282331156|gb|EFB60670.1| hypothetical protein SDAG_01488 [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590667|gb|EFB95743.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594027|gb|EFB99016.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|283470735|emb|CAQ49946.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|302333125|gb|ADL23318.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 452

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|223936025|ref|ZP_03627939.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223895247|gb|EEF61694.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1046

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 24/216 (11%)

Query: 3    QYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-VHDEK 55
             Y +       ++       G N       +  ++  Q+       + +   K      K
Sbjct: 821  LYQQVLEASRKEIVNAVDANGLNKSRMVVLTALLRLRQICCDLRLLESKLEAKPSEPSGK 880

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEW 104
            ++    ++E+       ++V   F + L  L+           +  G T D+     +  
Sbjct: 881  VELFGELLEEVVDGGHRVLVFSQFTTMLGLLRERLAAENIEFCYLDGATKDRAQVVERFQ 940

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + +IP+      + G GLNL  G + ++ F  WW+       +E     R  + G KR 
Sbjct: 941  RDSRIPVFLISLKAGGTGLNLT-GADTVIHFDPWWNPA-----VEAQATDRAHRIGQKRV 994

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V  Y LI + T++E +L     K  +   +L   ++
Sbjct: 995  VTSYKLITRGTVEEKILNLQTRKRALFQGMLGGEEQ 1030


>gi|326445095|ref|ZP_08219829.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 932

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 22/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y    RE    +Q     A             Q+ N    Y +E     +     K+  
Sbjct: 705 LYETVVRETMVQIQAAEGIARRGLVLKLLTSLRQICNHPAQYLKETASPRLAGRSGKLDL 764

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            + ++    A    ++V   +      +     Q     +           P  +  +  
Sbjct: 765 FDDLLGVMLAEQQSVLVFTQYVEMAHLVSARLEQQNVNHRLLHGGTPVAARPALVDAFQR 824

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GL L      ++F   WW+       +      R  + G +  V 
Sbjct: 825 GDFPVFLLSLRAAGTGLTLTR-AQHVIFLDQWWNPA-----VMDQAADRAYRIGTRHPVQ 878

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+ LI++ T++E + + L  K  + D +L+ +
Sbjct: 879 VHTLISEGTVEERIAELLAAKKDLADTVLSDV 910


>gi|254393510|ref|ZP_05008646.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197707133|gb|EDY52945.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 480

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 22/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y    RE    +Q     A             Q+ N    Y +E     +     K+  
Sbjct: 253 LYETVVRETMVQIQAAEGIARRGLVLKLLTSLRQICNHPAQYLKETASPRLAGRSGKLDL 312

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNE 106
            + ++    A    ++V   +      +     Q     +           P  +  +  
Sbjct: 313 FDDLLGVMLAEQQSVLVFTQYVEMAHLVSARLEQQNVNHRLLHGGTPVAARPALVDAFQR 372

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GL L      ++F   WW+       +      R  + G +  V 
Sbjct: 373 GDFPVFLLSLRAAGTGLTLTR-AQHVIFLDQWWNPA-----VMDQAADRAYRIGTRHPVQ 426

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           V+ LI++ T++E + + L  K  + D +L+ +
Sbjct: 427 VHTLISEGTVEERIAELLAAKKDLADTVLSDV 458


>gi|160942559|ref|ZP_02089806.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
 gi|158446143|gb|EDP23146.1| hypothetical protein FAEPRAM212_00034 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1098

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 22/206 (10%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     +    L   +  +     +  ++  ++        +          K+ A  
Sbjct: 878  KLYLAAVVDAREKLRAAKPEDKMTVFAVLMRLREICCDPRLVADN---WTGSSAKLDACL 934

Query: 61   VIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++ +A      I++   F S L                             ++ +N+G+
Sbjct: 935  ELVTEAVAGGHRILLFSQFTSMLELLAKRLDEAGVSHFTLQGSTPKPVRAEQVRRFNQGE 994

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    +I++ +  WW+L             R  + G +  V VY
Sbjct: 995  ADVFLISLRAGGTGLNLTA-ADIVIHYDPWWNLAAQ-----NQATDRAYRIGQRNPVQVY 1048

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLL 194
             LIAQ+TI+E +++  + K ++ D +
Sbjct: 1049 RLIAQDTIEEKIVELQQAKQSLADTV 1074


>gi|295103966|emb|CBL01510.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1098

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 22/206 (10%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     +    L   +  +     +  ++  ++        +          K++A  
Sbjct: 878  KLYLAAVVDAREKLRAAKPEDKMTVFAVLMRLREICCDPRLVADN---WTGSSAKLEACL 934

Query: 61   VIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++ +A      I++   F S L                             ++ +N+G+
Sbjct: 935  ELVTEAVAGGHRILLFSQFTSMLELLAKRLDEAGVSHFTLQGSTPKPVRAEQVRRFNQGE 994

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    +I++ +  WW+L             R  + G +  V VY
Sbjct: 995  ADVFLISLRAGGTGLNLTA-ADIVIHYDPWWNLAAQ-----NQATDRAYRIGQRNPVQVY 1048

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLL 194
             LIAQ+TI+E +++  + K ++ D +
Sbjct: 1049 RLIAQDTIEEKIVELQQAKQSLADTV 1074


>gi|326203945|ref|ZP_08193807.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
            DSM 2782]
 gi|325986043|gb|EGD46877.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
            DSM 2782]
          Length = 1077

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 2    KQY----HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + + +++ ++             S   +  QL      + +     E    K
Sbjct: 854  KLYIAYLEQAKGDIFKEINQNGYERSQIKILSVLTRLRQLCCHPALFVDNY---EGDSGK 910

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            +  L+ I+     +   I++   F S LA +++   +              ++    ++ 
Sbjct: 911  LLLLKEIVVDSLTSGHRILLFSQFTSMLAIIRQWLQEDGVDYLYLDGSTPAEERMKMVKN 970

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      S G GLNL  G + ++ +  WW+       +E     R  + G  +
Sbjct: 971  FNNGQGQIFLLSLKSGGTGLNLT-GADTVIHYDPWWNPA-----VEDQATDRAYRIGQLK 1024

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V  L+   TI+E +L+    K  + D ++ + +
Sbjct: 1025 TVHVMKLVTHGTIEEKILRLKDRKKQLVDAVIQSGE 1060


>gi|307822478|ref|ZP_07652709.1| SNF2-related protein [Methylobacter tundripaludum SV96]
 gi|307736082|gb|EFO06928.1| SNF2-related protein [Methylobacter tundripaludum SV96]
          Length = 1083

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 24/216 (11%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       R+     +G +          +K  Q          ++  K     K
Sbjct: 858  LYESIRLTMEKKVRDAIAQ-KGLSRSHITILDALLKLRQTCCDPRTLSLKEAQKVQESAK 916

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
            +  L  ++ +       I+V   F   +  ++      +                I+ + 
Sbjct: 917  LDLLMELLPEQLEEGRRILVFSQFTRMIGLIENELNDMKIGYAKLTGQTRNRDEAIERFK 976

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 977  SGEVNVFLISLKAGGVGLNLTE-ADTVIIYDPWWNPAA-----ESQAADRAHRIGQDKPV 1030

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            FVY LI +NT++E ++     K  + + +     KE
Sbjct: 1031 FVYKLITENTVEEKIIAMQDKKRALAEGIYKGGAKE 1066


>gi|257428238|ref|ZP_05604636.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257275079|gb|EEV06566.1| SNF2 family protein [Staphylococcus aureus subsp. aureus 65-1322]
          Length = 455

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|186474348|ref|YP_001863319.1| non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
 gi|184198307|gb|ACC76269.1| Non-specific serine/threonine protein kinase [Burkholderia phymatum
           STM815]
          Length = 892

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +  ++L   L+G +         S  ++  Q+ N    +  +  W      K   L 
Sbjct: 660 LYERAVKDLAAALEGADGIERKGIVLSYLMRFKQICNHPSQWLGDAAWSPEASGKFGRLR 719

Query: 61  VII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            ++    A    ++V   F                R       G  + K    ++++  +
Sbjct: 720 ELVDVMAAKQEKVLVFTQFRETTEPLAAFLGSLFGREGLILHGGTAVGKRRELVRQFQED 779

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + ++ F  WW+       +E     R  + G ++ V 
Sbjct: 780 ESTPFFVLSLKAGGSGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAFRIGQRKNVL 833

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  + Q T+++ + Q + +K  + + +L  
Sbjct: 834 VHKFVCQGTVEDRIDQLIESKQQLVNDMLEG 864


>gi|326444829|ref|ZP_08219563.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 980

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 21/218 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    RE    +                    Q+ N    Y  EE+        K++ L
Sbjct: 751 LYEAVVRETLDAVAAAQGMERRGLVVRLLTSLKQICNHPAQYLKEEEPVLGGRSGKLELL 810

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
           + +++      A ++V   +      L+               G  +      +  +  G
Sbjct: 811 DELLDTIVAEGAGVLVFTQYVRMARLLESHLAARGIAAQLLHGGTPVPVRDEMVTRFQNG 870

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P+      + G GLNL      +V    WW+       +E     R  + G  R V V
Sbjct: 871 EVPVFLLSLKAAGTGLNLTR-AEHVVHLDRWWNPA-----VEAQATDRAYRIGQTRPVQV 924

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + LIA+ T+++ + + L  K  + D +L + +     +
Sbjct: 925 HRLIAEGTVEDRIAELLARKRELADAVLGSGEGALTEL 962


>gi|294816509|ref|ZP_06775152.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
 gi|294329108|gb|EFG10751.1| Putative SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1040

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 21/218 (9%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    RE    +                    Q+ N    Y  EE+        K++ L
Sbjct: 811  LYEAVVRETLDAVAAAQGMERRGLVVRLLTSLKQICNHPAQYLKEEEPVLGGRSGKLELL 870

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEG 107
            + +++      A ++V   +      L+               G  +      +  +  G
Sbjct: 871  DELLDTIVAEGAGVLVFTQYVRMARLLESHLAARGIAAQLLHGGTPVPVRDEMVTRFQNG 930

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            ++P+      + G GLNL      +V    WW+       +E     R  + G  R V V
Sbjct: 931  EVPVFLLSLKAAGTGLNLTR-AEHVVHLDRWWNPA-----VEAQATDRAYRIGQTRPVQV 984

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + LIA+ T+++ + + L  K  + D +L + +     +
Sbjct: 985  HRLIAEGTVEDRIAELLARKRELADAVLGSGEGALTEL 1022


>gi|258420304|ref|ZP_05683251.1| helicase [Staphylococcus aureus A9719]
 gi|258448843|ref|ZP_05696953.1| phage helicase [Staphylococcus aureus A6224]
 gi|257843729|gb|EEV68131.1| helicase [Staphylococcus aureus A9719]
 gi|257857880|gb|EEV80771.1| phage helicase [Staphylococcus aureus A6224]
 gi|329730625|gb|EGG67010.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 452

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|295835764|ref|ZP_06822697.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
 gi|295825680|gb|EFG64393.1| SNF2/helicase domain-containing protein [Streptomyces sp. SPB74]
          Length = 788

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY---DEEKHWKEVHDEKIK 57
            Y    RE    +      +             Q+ N    Y     +         K+ 
Sbjct: 559 LYEAVVRESLAAIGSAEGMSRRGLVLRLITSLKQICNHPAQYLKEHPDTARLPGRSGKLD 618

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
           AL+ ++         ++V   +      L                G  ++     +  + 
Sbjct: 619 ALDELLGTILAEDGSVLVFTQYVRMARLLTAHLAAQAVPAGLLHGGTPVEARDALVDRFQ 678

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P+L     + G GLNL   G+ +V +  WW+       +E     R  + G  R V
Sbjct: 679 SGALPVLVLSLKAAGTGLNLTRAGH-VVHYDRWWNPA-----VEDQATDRAHRIGQTRHV 732

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ L+A+ T+++ +   +  K  + D +L 
Sbjct: 733 QVHRLLAEGTVEDRIADLVAGKQALADAVLG 763


>gi|301056711|ref|YP_003794922.1| SNF2 family helicase [Bacillus anthracis CI]
 gi|300378880|gb|ADK07784.1| SNF2 family helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 918

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|292492078|ref|YP_003527517.1| SNF2-related protein [Nitrosococcus halophilus Nc4]
 gi|291580673|gb|ADE15130.1| SNF2-related protein [Nitrosococcus halophilus Nc4]
          Length = 1042

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 3    QYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKI-- 56
             Y       ++   + +G   +     S  ++  Q+ N    + ++   + E    K+  
Sbjct: 810  LYEAVIQKVKDSLAETEGIQRKGL-ILSTLMRLKQICNHPAQFLQDGSEFSEGRSHKLER 868

Query: 57   --KALEVIIEKANAAPIIVAY---------HFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              + +E ++ +     +   +          F             G    +    I E+ 
Sbjct: 869  VAQMVEEVMAEGEGLLLFTQFTEIGQALEKRFQHHYHYPTYYLHGGTARRRRERMIAEFQ 928

Query: 106  EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      +      + G G+NL    N +  F  WW+       +E     R  + G  +
Sbjct: 929  DPDTGPAVFILSLKAGGVGINLTR-ANHVFHFDRWWNPA-----VENQATDRAYRIGQTK 982

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VFV+ ++   T++E + Q L  K  +   ++ 
Sbjct: 983  QVFVHKMVTLGTLEERIDQMLEEKQRLAGSIVG 1015


>gi|145298464|ref|YP_001141305.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
            A449]
 gi|142851236|gb|ABO89557.1| SWI/SNF family helicase [Aeromonas salmonicida subsp. salmonicida
            A449]
          Length = 1280

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E         K+    
Sbjct: 1063 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPELVMPEWSQT---SSKLDEAM 1119

Query: 61   VIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++++A  N   ++V   F   L                   G +      +I  +    
Sbjct: 1120 ALLDEAIGNGHRVLVFSQFVDLLSLLRARIEQKKWDYCYLDGGCSAKSRQDSILRFRHEP 1179

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+       +E     R  + G  + V VY
Sbjct: 1180 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPA-----VEDQASDRAHRMGQTQPVTVY 1233

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1234 RLVCEQTVEEKIVALHDEKRALADGLLSG 1262


>gi|148658072|ref|YP_001278277.1| non-specific serine/threonine protein kinase [Roseiflexus sp. RS-1]
 gi|148570182|gb|ABQ92327.1| Non-specific serine/threonine protein kinase [Roseiflexus sp. RS-1]
          Length = 1068

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y K +      L G    A             ++  Q+ N     + +        E 
Sbjct: 847  RLYIKQRDYYRALLLGLIDNAGIDNARMQVLEGLLRLRQICNHPRLIEPDFRGSSGKFEL 906

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            +      +  A     +V   F   L          R+  A+  G+T  +     +  ++
Sbjct: 907  LIETLETL-AAEGRKALVFSQFVQMLTLIREALDARRIPYAYLDGQTRQRQQEVDRFQSD 965

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +P       + G GLNL    + ++    WW+              R  + G ++ VF
Sbjct: 966  ETLPFFLISLKAGGVGLNLTA-ADYVIHVDPWWNPAVEM-----QATDRTHRIGQEKPVF 1019

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY L+ +++++E +L     K  + + L+ A
Sbjct: 1020 VYKLVTRDSVEEKILHLQNRKRELVEQLITA 1050


>gi|88857230|ref|ZP_01131873.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
 gi|88820427|gb|EAR30239.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas tunicata
            D2]
          Length = 1060

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 23/217 (10%)

Query: 2    KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDE 54
            K Y + ++++   L+      G +          +K  Q+        +E   +      
Sbjct: 836  KCYGEIRQKMEFKLKDLFAEIGIDKSRLAFLEALLKLRQICCSPQLLSDEGLQFSFADST 895

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEW 104
            K+  L   +         +I+   F S L+ +++                      +  +
Sbjct: 896  KLDWLAKHLPAMLQQGRKVIIFSQFTSMLSLIEQQLQALNLGYAILTGQTRDRQSAVDSF 955

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +G   +      + G GLNL    + ++ F  WW+    Q         R  + G K+ 
Sbjct: 956  QQGDKSIFLISLKAGGTGLNLTA-ADTVIHFDPWWNPAVEQ-----QATDRAYRIGQKKP 1009

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VFVY LI Q+TI+E V +  + K+ + +   +A  K+
Sbjct: 1010 VFVYKLICQDTIEERVYEMQQNKAALAESFFDAASKQ 1046


>gi|254497098|ref|ZP_05109919.1| DNA helicase [Legionella drancourtii LLAP12]
 gi|254353678|gb|EET12392.1| DNA helicase [Legionella drancourtii LLAP12]
          Length = 1091

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 23/220 (10%)

Query: 3    QYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDEK 55
             Y   +  +   ++   +               +K  Q+          E         K
Sbjct: 865  LYEAIRMSMEKKVRDAIVRQGLGKSHIIILDALLKLRQICCDPRLLSLPEATMAHGTSGK 924

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWN 105
            ++ L  +++        ++V   F S L         R                 ++++ 
Sbjct: 925  LETLMELLDNLVGEGRRVLVFSQFTSMLQLIENELQARHYDYLKLTGQTQNRQAMVEKFQ 984

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EGK P+      + G GLNL    + ++ +  WW+       +E     R  + G +  V
Sbjct: 985  EGKTPVFLISLKAGGTGLNLTR-ADTVIHYDPWWNPA-----VEDQATDRTHRIGQENPV 1038

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            FVY LI   T++E +L     K  + D +L+A   + I +
Sbjct: 1039 FVYKLITAGTVEEAILGMQERKRQLVDGILSADPAKAITL 1078


>gi|295428024|ref|ZP_06820656.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591005|ref|ZP_06949643.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300911909|ref|ZP_07129352.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
 gi|295128382|gb|EFG58016.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575891|gb|EFH94607.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|300886155|gb|EFK81357.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH70]
          Length = 455

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|117619195|ref|YP_857375.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
 gi|117560602|gb|ABK37550.1| SNF2 family helicase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
          Length = 1280

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E         K+    
Sbjct: 1063 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPQLVMPEWSQA---SSKLDEAM 1119

Query: 61   VIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++E+A  N   ++V   F   L                   G +      +I  +    
Sbjct: 1120 ALLEEAIGNGHRVLVFSQFVDLLSLLRARIEQQQWDYCYLDGGCSAKSRQESILRFRHEA 1179

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+       +E     R  + G  + V VY
Sbjct: 1180 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPA-----VEDQASDRAHRMGQTQPVTVY 1233

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1234 RLVCEQTVEEKIVALHDEKRALADGLLSG 1262


>gi|317126523|ref|YP_004100635.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
 gi|315590611|gb|ADU49908.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
          Length = 1043

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++G        N  +   K  Q+ N       ++        K+  LE
Sbjct: 813  LYQTIVDDMMARIEGSEGIERRGNVLAAMAKLKQVCNHPAQVLHDRSAIGSRSGKVIRLE 872

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-E 106
             ++E+       ++    +      L                 G    +    + ++  +
Sbjct: 873  ELLEEILAEGDRVLCFTQYTEFAEMLVPHLSARFDTDVAYLHGGTPKKRRDELVTQFQGD 932

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    N ++    WW+       +E     R  + G +R V 
Sbjct: 933  GGAPIFLLSLKAGGTGLNLTA-ANHVIHLDRWWNPA-----VENQATDRAYRIGQQRRVQ 986

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E + Q +  K  + +L++   ++
Sbjct: 987  VRKFVCTGTLEEKIDQMIEEKLALANLVVGDGER 1020


>gi|42784409|ref|NP_981656.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42740341|gb|AAS44264.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 918

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|47569742|ref|ZP_00240415.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
 gi|47553593|gb|EAL11971.1| helicase, SNF2/RAD54 family [Bacillus cereus G9241]
          Length = 918

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|284024515|ref|ZP_06378913.1| SNF2-related protein [Staphylococcus aureus subsp. aureus 132]
          Length = 452

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|251773065|gb|EES53621.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 1381

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 26/213 (12%)

Query: 4    YHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   +R+    L+      +     +  ++  K  +        +       +   K+ A
Sbjct: 1162 YEALRRKALETLEKLSGREKGSSRIHILAEITKLRRALCHPALVEPLT---LLPGAKLDA 1218

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE 106
              +++ +  +N    +V   F   L R            +         +    +  +  
Sbjct: 1219 FHLLVNELLSNRHKALVFSQFTGFLDRVAKSLDAKKIPYQYLDGSTPPKEREKRVAAFQA 1278

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  L      + G GLNL    + ++    WW+       +E     R  + G +R V 
Sbjct: 1279 GQGDLFLISLRAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRIGQQRPVT 1332

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +Y LI + +++E +L+  + K  +   LL   +
Sbjct: 1333 IYRLIVRESLEEKILELHKKKRDLATDLLEGGE 1365


>gi|87160506|ref|YP_494105.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87126480|gb|ABD20994.1| phage helicase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
          Length = 423

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 225 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T   D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LDDSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 398 YKALQNKELTQEELMKAIKARI 419


>gi|52140319|ref|YP_086511.1| SNF2 family helicase [Bacillus cereus E33L]
 gi|51973788|gb|AAU15338.1| SNF2 family helicase [Bacillus cereus E33L]
          Length = 918

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|295407565|ref|ZP_06817358.1| helicase [Staphylococcus aureus A8819]
 gi|297246595|ref|ZP_06930428.1| helicase [Staphylococcus aureus A8796]
 gi|294967584|gb|EFG43620.1| helicase [Staphylococcus aureus A8819]
 gi|297176553|gb|EFH35818.1| helicase [Staphylococcus aureus A8796]
          Length = 455

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|330819988|ref|YP_004348850.1| SNF2-related protein [Burkholderia gladioli BSR3]
 gi|327371983|gb|AEA63338.1| SNF2-related protein [Burkholderia gladioli BSR3]
          Length = 1119

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 18/206 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K ++    + +G            +K  Q+         E+  +     K+  L  ++ 
Sbjct: 885  EKMRK-AVAE-KGLARSHIVVLEALLKLRQVCCDPRLVKLERAARVEESAKLALLMEMLP 942

Query: 65   K--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +       +++   F   L  + +                      +Q + +G++PL   
Sbjct: 943  ELIEEGRRVLLFSQFTGMLELIAEALDAAGIAHVMLTGDTTDRVTPVQRFQQGEVPLFLI 1002

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + ++ +  WW+       +E     R  + G  + VFVY LI   
Sbjct: 1003 SLKAGGVGLNLTA-ADTVIHYDPWWNPS-----VENQATDRAHRLGQDKPVFVYKLIVAG 1056

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKK 200
            +++E +L     K+ +   +L+    
Sbjct: 1057 SVEEKILVLQEQKAALASAILSEDAA 1082


>gi|261404584|ref|YP_003240825.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261281047|gb|ACX63018.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 1033

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYD--EEKHWKEVHDEKIKA 58
             Y     E+   ++     A          K  Q+ +        + +  +     K++ 
Sbjct: 802  MYQAVVDEMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDDGRAVRPESSGKMER 861

Query: 59   LEVIIEKAN--AAPIIVAYHFN-------SDLARLQ----KAFPQGRTLDKDPCTIQEWN 105
            +  I++         ++   +        S L R           G    +    ++ + 
Sbjct: 862  MLEILDSIADVGESALIFTQYVGMGELLVSMLGRKYGKQPYFLHGGVQKRERDEMVRAFQ 921

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+          + G GLNL    N ++ +  WW+       +E     R  + G  R 
Sbjct: 922  AGEGTEFFVLSLKAGGVGLNLTR-ANHVLHYDRWWNPA-----VENQATDRVFRIGQNRN 975

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ LI+Q T++E + + +  K  + + ++ + +
Sbjct: 976  VQVHKLISQGTLEERIDELIEQKKALSEQVVGSGE 1010


>gi|298693629|gb|ADI96851.1| putative DNA helicase [Staphylococcus aureus subsp. aureus ED133]
          Length = 455

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y K ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEKLEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|225619641|ref|YP_002720898.1| superfamily II D/R helicase [Brachyspira hyodysenteriae WA1]
 gi|225214460|gb|ACN83194.1| HepA, Superfamily II D/R helicase, SNF2 family [Brachyspira
            hyodysenteriae WA1]
          Length = 1033

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 22/215 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++ +   +R+ +              S   +  Q+        ++   +     K     
Sbjct: 821  IEIFETVKRKGFAQ------SHIEIFSALTRLRQVCCHPRLMHDDLRGESHTSGKFHMFI 874

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIP 110
             +I++  +    ++V   F   L  ++          F            +  +N G+ P
Sbjct: 875  EMIKEAISGGHSVLVFSSFTRMLNLMRSAFKKLGIDYFYLDGATKDRMDLVHRFNAGEAP 934

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GL L    + ++ + LWW+       +E     R  + G KR V  Y L
Sbjct: 935  IFLLSLKAAGTGLTLTQ-ADTVMHYDLWWNPA-----VEDQATDRAYRIGQKRVVTNYKL 988

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + TI+E +L+    K  + D ++     +   +
Sbjct: 989  ITRGTIEEKILELQNKKRLLIDTVVGDSMGDINKL 1023


>gi|302527381|ref|ZP_07279723.1| SNF2/RAD54 family helicase [Streptomyces sp. AA4]
 gi|302436276|gb|EFL08092.1| SNF2/RAD54 family helicase [Streptomyces sp. AA4]
          Length = 873

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 3   QYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y    REL  D+                    Q+ N    +  E     +     K++ 
Sbjct: 646 LYEATVRELMADIAASDGMARRGRVVKLLAALKQICNHPAQFLGEPADSTLAGRSGKLEL 705

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
           L+ +++        ++V   +      L++              G  + +    +  +  
Sbjct: 706 LDELLDTILAEDGAVLVFTQYVVMARLLERHLAARGVPSRLLHGGTPVARREELVCGFQN 765

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G +P+      + G GL L    + +V +  WW+       +E     R  + G  R V 
Sbjct: 766 GDVPVFLLSLKAAGTGLTLTR-ADHVVHYDRWWNPA-----VEDQATDRAYRIGQTRPVQ 819

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V+ L+A+ T+++ +   LR K  + D +L + +     +
Sbjct: 820 VHRLVAEGTVEDRIAAMLREKRALADAVLASGEAALTEL 858


>gi|118480284|ref|YP_897435.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196045586|ref|ZP_03112816.1| putative helicase [Bacillus cereus 03BB108]
 gi|118419509|gb|ABK87928.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196023417|gb|EDX62094.1| putative helicase [Bacillus cereus 03BB108]
          Length = 918

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|325270384|ref|ZP_08136989.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987328|gb|EGC19306.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1326

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D      ++   K+ A  
Sbjct: 1107 MAMYEVRRRETEEKVRANAADKVSTLAEITRLRQMACSCSLVD---RKWKLPSSKVLAFI 1163

Query: 61   VIIEKAN--AAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S L                      + +    +Q++  G+
Sbjct: 1164 DLAESLNDSGNRALVFSQFTSFLDEVRRAMDKARLPYLYLDGSTPMAQREKLVQDFQTGR 1223

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    Q         R  + G K+ V VY
Sbjct: 1224 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQ-----QATDRAYRIGQKQEVTVY 1277

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  RTK  + D LL  
Sbjct: 1278 HLISQHTIEEKILRLHRTKRNLSDSLLEG 1306


>gi|253699069|ref|YP_003020258.1| SNF2-related protein [Geobacter sp. M21]
 gi|251773919|gb|ACT16500.1| SNF2-related protein [Geobacter sp. M21]
          Length = 901

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +  ++L   L+ +          +   +  Q+ N       +  +   +  K   L 
Sbjct: 670 LYRQGVQDLARSLKEKAGMERRGLVLAALTRFKQICNHPSQALGDGEYGAGNSGKYDRLR 729

Query: 61  VIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E+       ++V   F                R       G  + +    +  +  E
Sbjct: 730 EICEEIESRGEKVLVFSQFKEMALQLTSFLGTVFGRSGLVLHGGTPVAERQRIVDRFQHE 789

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P L     + G GLNL    + ++ F  WW+       +E     R  + G KR V 
Sbjct: 790 DGPPFLVLSLKAGGTGLNLTA-ASQVIHFDRWWNPA-----VENQATDRAFRIGQKRNVL 843

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  + + T++E +   +  K+ +   +L  
Sbjct: 844 VHKFVCRGTVEEKIDALIAEKTRLAVDILEG 874


>gi|254443939|ref|ZP_05057415.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198258247|gb|EDY82555.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 799

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 22/218 (10%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K+Y     E    L+     G++  AFN     ++  Q+       D     ++V   K+
Sbjct: 577 KRYDLELDEARAMLKSAKEGGQSTGAFNVLQALLRLRQICCDPELLDTSGDREDVESAKM 636

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNE 106
           +AL  ++E   A    ++V   F S L   ++                 +    ++ + +
Sbjct: 637 QALLDLLEPLVAEGHKVLVFSQFVSLLEIAERELHAIGIGSLKLTGKTKRRGELVEHFQK 696

Query: 107 GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G    +      + G GL L    + +V    WW+       +E   + R  + G K  V
Sbjct: 697 GNEEQVFLLSLKAAGSGLTLTA-ASYVVLLDPWWNPA-----VEAQAIDRAHRIGQKDQV 750

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             Y ++A++T++E + +    KS +   L      E+ 
Sbjct: 751 IAYRILAKDTVEEKIRKIQAEKSELAAALFGEGGGEST 788


>gi|217962731|ref|YP_002341307.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|222098706|ref|YP_002532764.1| helicase, putative [Bacillus cereus Q1]
 gi|217063978|gb|ACJ78228.1| SNF2 family helicase [Bacillus cereus AH187]
 gi|221242765|gb|ACM15475.1| helicase, putative [Bacillus cereus Q1]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|225867216|ref|YP_002752594.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786779|gb|ACO26996.1| putative helicase [Bacillus cereus 03BB102]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|196036261|ref|ZP_03103659.1| putative helicase [Bacillus cereus W]
 gi|218906422|ref|YP_002454256.1| putative helicase [Bacillus cereus AH820]
 gi|195991053|gb|EDX55023.1| putative helicase [Bacillus cereus W]
 gi|218539910|gb|ACK92308.1| putative helicase [Bacillus cereus AH820]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|206976890|ref|ZP_03237792.1| SNF2 family helicase [Bacillus cereus H3081.97]
 gi|206744856|gb|EDZ56261.1| SNF2 family helicase [Bacillus cereus H3081.97]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|297203431|ref|ZP_06920828.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
 gi|297148407|gb|EFH28976.1| SNF2/RAD54 family helicase [Streptomyces sviceus ATCC 29083]
          Length = 297

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEE------KHWKEVHDE 54
            Y    RE    ++     A             Q+ +    Y +E               
Sbjct: 66  LYEAVVRESLLAIETAQGIARRGLVLKLLGALKQICDHPALYLKEEVPPTAGERLVARSG 125

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++         +V   +      +                G  + +    + 
Sbjct: 126 KLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAARAVPVDLLHGGTPVPERERMVD 185

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G IP+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 186 RFQSGAIPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 239

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + V V+ LI + T+++ + + L +K  + D +L + +     +
Sbjct: 240 QPVQVHRLITEGTVEDRIAEMLESKRALADAILGSGESALTEL 282


>gi|254724328|ref|ZP_05186112.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|315197730|gb|EFU28064.1| possible helicase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 452

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T   D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LDDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|38637840|ref|NP_942814.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527178|gb|AAP85928.1| putative helicase, superfamily II [Ralstonia eutropha H16]
          Length = 892

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +  ++L   L+  +         S  ++  Q+ N    +  +  WK     K   L 
Sbjct: 660 LYQRAVKDLAAALEDADGIGRKGVVLSYLMRFKQICNHPSQWLGDAAWKAEDSGKFARLR 719

Query: 61  VI--IEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            +  +  A    ++V   F                R       G  + K    ++ +  +
Sbjct: 720 QLAEVIAAKQEKVLVFTQFRETTEPLAAFLGSIFGREGLVLHGGTPVAKRRELVKRFQED 779

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + ++ +  WW+       +E     R  + G +R V 
Sbjct: 780 ELTPFFVLSLKAGGAGLNLTA-ASHVIHYDRWWNPA-----VENQATDRAFRIGQRRNVL 833

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  I + T+++ + Q +  K  +   +L  
Sbjct: 834 VHKFICRGTVEDRIDQLIEAKQQLVKDVLEG 864


>gi|196039505|ref|ZP_03106810.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196029665|gb|EDX68267.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 918

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|117921236|ref|YP_870428.1| SNF2-like protein [Shewanella sp. ANA-3]
 gi|117613568|gb|ABK49022.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 1082

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       ++++      + +   +       +K  Q          E+  K  ++ K+
Sbjct: 860  LYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVKLEQAQKVKNNAKL 919

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNE 106
              L   + +       I++   F S L  +++                      I ++ E
Sbjct: 920  NWLNQNLPEMVQEGRKILIFSQFTSMLLLIEELLQSLNIDYSKLTGQTRLRQGQIDKFQE 979

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+        E+    R  + G +  VF
Sbjct: 980  GDTPVFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----EKQATDRAHRIGQENPVF 1033

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA+ T++E + +  + K  + D +L  
Sbjct: 1034 VYKLIAEGTVEEKIQEMQQHKQGLADSILEG 1064


>gi|258646424|ref|ZP_05733893.1| SNF2 domain protein [Dialister invisus DSM 15470]
 gi|260403827|gb|EEW97374.1| SNF2 domain protein [Dialister invisus DSM 15470]
          Length = 459

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 114/203 (56%), Gaps = 10/203 (4%)

Query: 4   YHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           Y++ ++++  DL  +++ +  ++A+ + K  QLANGAV Y ++  W+E+H++KI+A   +
Sbjct: 256 YNELEKKMVLDLGDDHVLDVTSAAALSNKLQQLANGAV-YTDDGGWQEIHNDKIEAFMEL 314

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPASC 119
           IE+ N    IV Y+F  DL RL+ A  +     +         +WN GK+ +L AHPAS 
Sbjct: 315 IEQLNGKHAIVFYNFRHDLDRLRAALQKTNLHIRQLQTSADELDWNAGKVDILLAHPAST 374

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLNLQ GGN +V+F L W LE +Q         R  + G K  V V+ LI + T DE 
Sbjct: 375 AYGLNLQDGGNHVVWFGLNWSLELYQ-----QANKRLHRQGQKNRVIVHQLICEGTRDED 429

Query: 180 VLQRLRTKSTIQDLLLNALKKET 202
           + + L  K   Q  ++++LK   
Sbjct: 430 LARALLMKDAAQQYVMDSLKARV 452


>gi|107100261|ref|ZP_01364179.1| hypothetical protein PaerPA_01001285 [Pseudomonas aeruginosa PACS2]
          Length = 773

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 540 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 599

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 600 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 659

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 660 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 713

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 714 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 754


>gi|329927070|ref|ZP_08281440.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328938698|gb|EGG35076.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 1030

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYD--EEKHWKEVHDEKIKA 58
             Y     E+   ++     A          K  Q+ +        + +  +     K++ 
Sbjct: 802  MYQAVVDEMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDDGRAVRPESSGKMER 861

Query: 59   LEVIIEKAN--AAPIIVAYHFN-------SDLARLQ----KAFPQGRTLDKDPCTIQEWN 105
            +  I++         ++   +        S L R           G    +    ++ + 
Sbjct: 862  MLEILDSIADVGESALIFTQYVGMGELLVSMLGRKYGKQPYFLHGGVQKRERDEMVRAFQ 921

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+          + G GLNL    N ++ +  WW+       +E     R  + G  R 
Sbjct: 922  AGEGTEFFVLSLKAGGVGLNLTR-ANHVLHYDRWWNPA-----VENQATDRVFRIGQNRN 975

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ LI+Q T++E + + +  K  + + ++ + +
Sbjct: 976  VQVHKLISQGTLEERIDELIEQKKALSEQVVGSGE 1010


>gi|324329191|gb|ADY24451.1| helicase, putative [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 918

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K +     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKNIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|30265272|ref|NP_847649.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47530804|ref|YP_022153.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188082|ref|YP_031335.1| helicase [Bacillus anthracis str. Sterne]
 gi|65317216|ref|ZP_00390175.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           anthracis str. A2012]
 gi|165870042|ref|ZP_02214699.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167636534|ref|ZP_02394830.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167641825|ref|ZP_02400066.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170689422|ref|ZP_02880614.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170708948|ref|ZP_02899380.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177654075|ref|ZP_02936085.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190567743|ref|ZP_03020655.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227818007|ref|YP_002818016.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229602583|ref|YP_002869461.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254686332|ref|ZP_05150191.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254735172|ref|ZP_05192881.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254737051|ref|ZP_05194756.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744378|ref|ZP_05202058.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755680|ref|ZP_05207713.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759588|ref|ZP_05211613.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30259950|gb|AAP29135.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47505952|gb|AAT34628.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182009|gb|AAT57385.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714365|gb|EDR19885.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167510237|gb|EDR85642.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167528066|gb|EDR90866.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170126113|gb|EDS95008.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170666649|gb|EDT17420.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172080958|gb|EDT66037.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190561159|gb|EDV15132.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003185|gb|ACP12928.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229266991|gb|ACQ48628.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 918

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|225174512|ref|ZP_03728511.1| Non-specific serine/threonine protein kinase [Dethiobacter
            alkaliphilus AHT 1]
 gi|225170297|gb|EEG79092.1| Non-specific serine/threonine protein kinase [Dethiobacter
            alkaliphilus AHT 1]
          Length = 1185

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +        +             +      Q+ N  V++ +       +  K +   
Sbjct: 959  LYQQIVEREMSAVSESSGMERRGRILALMTSLKQICNHPVHFSKNGAPYPQNSGKAQLAF 1018

Query: 61   VIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEW-NE 106
             ++ +   +    ++   +              L +    F    T  +    I+E+ N 
Sbjct: 1019 QLLRQILQDGEKALIFTQYKQMGDILIRMLEAELNQPLPFFHGSLTPKQREQRIEEFQNN 1078

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               PL+     + G GLNL      ++ + LWW+       +E     R  + G  + V 
Sbjct: 1079 PHTPLMVVSLKAGGTGLNLTA-ATHVLHYDLWWNPA-----VEDQATDRAYRIGQTKNVT 1132

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V+  I   T++E +   L  K  + DL ++A +
Sbjct: 1133 VHRFITLGTLEEKIDTILTAKKDLADLTISAGE 1165


>gi|254443232|ref|ZP_05056708.1| Type III restriction enzyme, res subunit family [Verrucomicrobiae
           bacterium DG1235]
 gi|198257540|gb|EDY81848.1| Type III restriction enzyme, res subunit family [Verrucomicrobiae
           bacterium DG1235]
          Length = 824

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE-------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y   ++    ++                + ++ ++  Q        D+          
Sbjct: 602 KTYEAARQNAEAEISQLEKSGASEGALRMKTLTQLLRLRQTCCDPRLLDKSLDATA--SS 659

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQE 103
           K+ +   ++E+       I+V   F S L+ L+           +  G T ++     + 
Sbjct: 660 KLNSFLELLEESIDGGHRILVFSQFVSLLSILKEQLDSENIPYCYIDGSTRNRMAEVDRF 719

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +   IP+      + G GLNL    + +V F  WW+        E     R  + G  +
Sbjct: 720 NDSDDIPIFLISLKAGGTGLNLTA-ADTVVHFDPWWNPAA-----EAQATDRAHRIGQTK 773

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V  Y LI  ++++E VLQ  + K  + + +  A + 
Sbjct: 774 VVTSYKLIVSDSVEEKVLQLQQQKRKLLEDVFEASEA 810


>gi|49481223|ref|YP_039235.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332779|gb|AAT63425.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 918

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|296390849|ref|ZP_06880324.1| helicase [Pseudomonas aeruginosa PAb1]
          Length = 773

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 540 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 599

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 600 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 659

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 660 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 713

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 714 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 754


>gi|313105624|ref|ZP_07791890.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310878392|gb|EFQ36986.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 773

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 540 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 599

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 600 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 659

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 660 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 713

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 714 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 754


>gi|317482426|ref|ZP_07941443.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316916086|gb|EFV37491.1| SNF2 family domain-containing protein [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1394

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1213

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1214 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1273

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1274 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1327

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1328 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|312134029|ref|YP_004001368.1| superfamily ii DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
 gi|311773336|gb|ADQ02824.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum subsp. longum
            BBMN68]
          Length = 1286

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1049 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1105

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1106 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1165

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1166 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1219

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1220 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1252


>gi|296454690|ref|YP_003661833.1| SNF2-like protein [Bifidobacterium longum subsp. longum JDM301]
 gi|296184121|gb|ADH01003.1| SNF2-related protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 1420

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1183 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1239

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1240 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1299

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1300 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1353

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1354 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1386


>gi|239621668|ref|ZP_04664699.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239515543|gb|EEQ55410.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1388

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1151 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1207

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1208 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1267

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1268 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1321

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1322 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1354


>gi|213691499|ref|YP_002322085.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|213522960|gb|ACJ51707.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|320457574|dbj|BAJ68195.1| putative helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1423

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1186 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1242

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1243 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1302

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1303 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1356

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1357 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1389


>gi|189440776|ref|YP_001955857.1| superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
 gi|189429211|gb|ACD99359.1| Superfamily II DNA/RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1394

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1213

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1214 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1273

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1274 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1327

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1328 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|171909776|ref|ZP_02925246.1| SNF2-related protein [Verrucomicrobium spinosum DSM 4136]
          Length = 916

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y +    L  +L     +        +  +K  Q+ N    +  +  +      K + 
Sbjct: 681 QLYQRVVTALARELGDTEDQIQRQGVILAALMKLKQICNHPSQWSGDSRYLPADSGKFQR 740

Query: 59  LEVIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           LE +          +IV   F                R       G  + K    ++E+ 
Sbjct: 741 LEELCSGIADRQEKVIVFTQFKEMTLPVADYLATVFGRPGLVLHGGTAVGKRGQLVEEFQ 800

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G  P       + G GL L    + ++ F  WW+       +E     R  + G  +A
Sbjct: 801 SPGGPPFFVISVKAGGTGLTLTA-ASHVIHFDRWWNPA-----VEDQATDRAYRIGQTKA 854

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  + Q T++E +   +R K  + + +L  
Sbjct: 855 VMVHKFVCQGTLEEKIDGIIREKRALANEILGG 887


>gi|23466281|ref|NP_696884.1| helicase [Bifidobacterium longum NCC2705]
 gi|322689764|ref|YP_004209498.1| helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691713|ref|YP_004221283.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23327031|gb|AAN25520.1| possible helicase [Bifidobacterium longum NCC2705]
 gi|320456569|dbj|BAJ67191.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461100|dbj|BAJ71720.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1394

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1213

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1214 AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1273

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1274 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1327

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1328 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|46190976|ref|ZP_00120784.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
            [Bifidobacterium longum DJO10A]
          Length = 1062

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 825  KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 881

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 882  AAITELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 941

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 942  NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 996  VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1028


>gi|330829013|ref|YP_004391965.1| SWI/SNF family helicase [Aeromonas veronii B565]
 gi|328804149|gb|AEB49348.1| SWI/SNF family helicase [Aeromonas veronii B565]
          Length = 1291

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y   +RE+   +Q  +  A  +  S   +  +L         E         K+    
Sbjct: 1074 QLYEATRREVVQQVQSADGRALMHVLSGLTRLRRLCCSPELVMPEWSQT---SSKLDEAM 1130

Query: 61   VIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++E+       ++V   F   L+                  G +      +I  +   +
Sbjct: 1131 ALLEEAIDGGHRVLVFSQFVDLLSLLRARIEQKSWDYCYLDGGCSAKSRQDSILRFRHEE 1190

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +PL      + G GLNL    + ++    WW+       +E     R  + G  + V VY
Sbjct: 1191 VPLFLISLKAGGTGLNLTQ-ADTVLHLDPWWNPA-----VEDQASDRAHRMGQTQPVTVY 1244

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + T++E ++     K  + D LL+ 
Sbjct: 1245 RLVCEQTVEEKIVALHDEKRALADGLLSG 1273


>gi|329943269|ref|ZP_08292043.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|313848419|emb|CBY17423.1| putative DNA helicase-related protein [Chlamydophila psittaci RD1]
 gi|325506669|gb|ADZ18307.1| putative DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814816|gb|EGF84806.1| helicase conserved C-terminal domain protein [Chlamydophila psittaci
            Cal10]
 gi|328915108|gb|AEB55941.1| helicase, Snf2/Rad54 family [Chlamydophila psittaci 6BC]
          Length = 1205

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DE 54
            K Y    +     +      + + +   +  +      Q+ N    + +       H   
Sbjct: 956  KLYLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K +A   ++  +  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWEAFVRLLHDSLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|15615476|ref|NP_243779.1| SNF2 helicase [Bacillus halodurans C-125]
 gi|10175535|dbj|BAB06632.1| SNF2 helicase [Bacillus halodurans C-125]
          Length = 995

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      +   L                 K  Q+ N   ++ ++K+      EK + L 
Sbjct: 772 LYQAVVDNMVHQLGDVTHMERRALILKTLTKLKQICNHPAHFLKDKNVDAHQSEKWELLL 831

Query: 61  VIIEKANAA--PIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQEWNE 106
            + E+       +++   F      +Q AF                   +     +  N+
Sbjct: 832 TLSEQIMDRQEKMLIFTQFKEMGHLMQDAFQSQIGTPIPFLHGSLSRQQRQEAVERFQND 891

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P+      + G GLNL    N ++ +  WW+       +E     R  + G    V 
Sbjct: 892 RELPIFILSLKAGGVGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQTADVT 945

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V+ L+ + T++E + Q L +K  + + +L A + +   +
Sbjct: 946 VHKLMTEGTLEERIHQMLESKQALAEQILTAGENQLTEL 984


>gi|29028643|ref|NP_803332.1| helicase [Staphylococcus phage phi 12]
 gi|18920567|gb|AAL82307.1| phage helicase [Staphylococcus phage phi 12]
          Length = 423

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 225 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 283

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 284 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 342

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 343 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 397

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 398 YKALQNKELTQEELMKAIKARI 419


>gi|161509685|ref|YP_001575344.1| helicase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294848484|ref|ZP_06789230.1| helicase [Staphylococcus aureus A9754]
 gi|160368494|gb|ABX29465.1| possible helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294824510|gb|EFG40933.1| helicase [Staphylococcus aureus A9754]
 gi|320140665|gb|EFW32519.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142763|gb|EFW34566.1| protein, SNF2 family [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 455

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T   D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LDDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|114562478|ref|YP_749991.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
 gi|114333771|gb|ABI71153.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
          Length = 1070

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +++L      + + + +       +K  Q          E+  +   + K+
Sbjct: 848  LYESIRLVMEKKLRELFAKKGVSSSHIEFLDALLKLRQACCDPRLVKLEQAQQVKDNAKM 907

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNE 106
              L   + +       I++   F   LA ++                       I  + E
Sbjct: 908  TWLIQNLPEMIEEGRKILIFSQFTGMLALIEDELKRLTISYSKLTGQTRDRQTQIDAFQE 967

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL    + ++ F  WW+        ER    R  + G    VF
Sbjct: 968  GDNSVFLISLKAGGTGLNLTA-ADTVIHFDPWWNPAA-----ERQATDRAHRIGQLNPVF 1021

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIAQ T++E + +  + K  + D +L+ 
Sbjct: 1022 VYKLIAQGTVEEKIQEMQQHKQGLADSILSD 1052


>gi|253573733|ref|ZP_04851076.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
 gi|251847261|gb|EES75266.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
          Length = 1111

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K Q+E    L  +          +   +  QL      + +          K
Sbjct: 888  KLYLAYLAKLQQETLKHLDADTFGQNRIRILAGLTRLRQLCCHPALFVDGYD---GGSAK 944

Query: 56   IKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
               L  +IE+       +++   F   L                        +       
Sbjct: 945  FDQLMEMIEECQSAGKRVLIFSQFTEMLGLIGRELGYRGLPFFYLDGKTPAAERVELCSR 1004

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  L      + G GLNL  G + ++ + LWW+    Q         R  + G K 
Sbjct: 1005 FNDGERDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRIGQKN 1058

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V  ++AQ T+++ + +  + K  + + +L
Sbjct: 1059 IVHVIRMVAQGTVEDKMYELQQKKKHLVEEVL 1090


>gi|227546637|ref|ZP_03976686.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212954|gb|EEI80833.1| helicase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 1394

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  K  Q+         +   +     K+
Sbjct: 1157 KLYAAHEQRLRMQLEHSEEADFNTSKIRILAELTKLRQICCDPRLLYADAKDQ---SAKL 1213

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1214 AAITDLVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKKKRLELVDQF 1273

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+              R  + G    
Sbjct: 1274 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQD-----QATDRAHRIGQTED 1327

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1328 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1360


>gi|62185500|ref|YP_220285.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
 gi|62148567|emb|CAH64339.1| putative DNA helicase-related protein [Chlamydophila abortus S26/3]
          Length = 1206

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DE 54
            K Y    +     +      + + +   +  +      Q+ N    + +       H   
Sbjct: 956  KLYLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESG 1015

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K +A   ++  +  +   ++V   +   +  +         + A  QG++L++       
Sbjct: 1016 KWEAFVRLLHDSLSSGYKVVVFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYF 1075

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              + +  +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1076 TTDPECRVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKN 1129

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+ ++T++E +   +  K  + D +++      +H+
Sbjct: 1130 TVFIYKLMTEDTLEERIHYLIEKKIRLLDKVISTQDSNILHM 1171


>gi|218233440|ref|YP_002370024.1| putative helicase [Bacillus cereus B4264]
 gi|218161397|gb|ACK61389.1| putative helicase [Bacillus cereus B4264]
          Length = 918

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|218900369|ref|YP_002448780.1| putative helicase [Bacillus cereus G9842]
 gi|218544351|gb|ACK96745.1| putative helicase [Bacillus cereus G9842]
          Length = 918

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|312794614|ref|YP_004027537.1| SNF2-like protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181754|gb|ADQ41924.1| SNF2-related protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 1108

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     + E   + +G         S   +  Q+      + E     E    K++  E
Sbjct: 892  LKAREDIKNE--IEQKGFEKSKIKIFSILTRLRQICCHPKLFLENY---EGSSGKLELFE 946

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             I+E    +    IV   +   L                       ++       +N G+
Sbjct: 947  EILEDVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKSEERIDMANSFNSGQ 1006

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+       +E   + R  + G + +V V+
Sbjct: 1007 KQVFLISLKAGGFGLNLT-GADVVILYDLWWNPA-----VENQAMDRAHRIGQENSVQVF 1060

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI +NTI+E + +  + K  + D ++ +
Sbjct: 1061 RLITKNTIEERIFELQQKKKDLFDSIVQS 1089


>gi|229175913|ref|ZP_04303410.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
 gi|228607507|gb|EEK64832.1| Helicase, SNF2/RAD54 [Bacillus cereus MM3]
          Length = 855

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LI   T++E + + L  K ++ + ++
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVI 835


>gi|239623482|ref|ZP_04666513.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521513|gb|EEQ61379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1088

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 32/225 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            MK   K +   + +            ++ ++  QL        E    +     K++   
Sbjct: 869  MKLKEKLESGGFSESGDG---RLQILAELMRLRQLCCDPRLCYENYKHE---SAKLETCM 922

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
             ++ +  +    I++   F S L  ++                 + ++    + E+    
Sbjct: 923  DLVRRGISGEHKILLFSQFTSMLELIEKRLSKEGMASHKLTGATSKEERIRMVGEFQRDD 982

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL    +I++ +  WW++             R  + G ++ V VY
Sbjct: 983  VPVFLISLKAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRTHRIGQEKQVTVY 1036

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             LI +NTI+E +L+   +K  + D ++           K++ +++
Sbjct: 1037 KLITRNTIEENILKLQESKQYLADQIVTEGTVSFGSLTKEDILNI 1081


>gi|254412572|ref|ZP_05026346.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
 gi|196180882|gb|EDX75872.1| SNF2 family N-terminal domain protein [Microcoleus chthonoplastes PCC
            7420]
          Length = 1061

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +++   L+            S  +K  Q+ N    +  +   +      K++ L
Sbjct: 830  LYEAVVKDVEAKLEDAEGINRKGLILSTLLKLKQVCNHPAQFLQDNSEFSPTRSHKLERL 889

Query: 60   EVIIEKAN--AAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              +IE+ N     +++   F              L         G +  K    I  + +
Sbjct: 890  LEMIEEVNAEGESLLIFTQFTDIGSALTNYLKQTLHYNTYYIHGGISRAKREQMITAFQD 949

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                         + G G+ L    N +  F  WW+       +E     R  + G K+ 
Sbjct: 950  PDTEPSAFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQKKN 1003

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  +A  T++E + Q +  K  +   ++ A +
Sbjct: 1004 VFVHKFVALGTLEERIDQMIEEKKKLSGAIVGADE 1038


>gi|254239157|ref|ZP_04932480.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
 gi|126171088|gb|EAZ56599.1| hypothetical protein PACG_05345 [Pseudomonas aeruginosa C3719]
          Length = 663

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----V 51
           + Y   +    R++  ++   G            +K  Q+         ++        +
Sbjct: 430 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGTRSGRAL 489

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 490 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 549

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 550 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 603

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 604 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 644


>gi|206970363|ref|ZP_03231316.1| putative helicase [Bacillus cereus AH1134]
 gi|206734940|gb|EDZ52109.1| putative helicase [Bacillus cereus AH1134]
          Length = 918

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|313112827|ref|ZP_07798474.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624897|gb|EFQ08205.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1100

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     +    L   +  +     +  ++  ++        +     +    K+ A  
Sbjct: 881  KLYLAAVVDAREKLRAAKPEDKMAVFAVLMRLREICCDPRLVADN---WDGGSAKLDACM 937

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++         I++   F S L                             ++ +N G+
Sbjct: 938  ELVTAAVEGGHRILLFSQFTSMLELLAKRLDEAGVSHFTLQGSTPKPVRAELVRRFNSGE 997

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    +I++ +  WW++             R  + G +  V VY
Sbjct: 998  ADVFLISLRAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRAYRIGQRNPVQVY 1051

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             LIAQ+TI+E +++  + K  + + +  +     + +
Sbjct: 1052 KLIAQDTIEEKIVELQQAKQDLAETVTGSADGAILSM 1088


>gi|312877116|ref|ZP_07737087.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796090|gb|EFR12448.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 1126

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     + E   + +G         S   +  Q+      + E     E    K++  E
Sbjct: 910  LKAREDIKNE--IEQKGFEKSKIKIFSILTRLRQICCHPKLFLENY---EGSSGKLELFE 964

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             I+E    +    IV   +   L                       ++       +N G+
Sbjct: 965  EILEDVLESGHRAIVFSQWTEMLRILEERIKDRGFEYFYLDGSTKPEERIDMANSFNSGQ 1024

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+       +E   + R  + G + +V V+
Sbjct: 1025 KQVFLISLKAGGFGLNLT-GADVVILYDLWWNPA-----VENQAMDRAHRIGQENSVQVF 1078

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI +NTI+E + +  + K  + D ++ +
Sbjct: 1079 RLITKNTIEERIFELQQKKKDLFDTIIQS 1107


>gi|254444760|ref|ZP_05058236.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259068|gb|EDY83376.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 831

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           ++Y +   E       +   A  +      S   +  Q++         +   E    K+
Sbjct: 600 REYKRICEEGLARFGDDLGSALRTNRFATLSLLTRLRQVSCDPNLLPWMESSIE-DSGKL 658

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQE 103
             L   + +       +++   F   L R +                G T D++    + 
Sbjct: 659 MVLLEKLIEVLGTGHKVVIFSQFVRFLKRARIMVEESFPELPIFELTGSTHDREAPVREF 718

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N  +   +     +   G+ L    + +     WW+     Q I+R+      + G   
Sbjct: 719 QNTDQTAAMLVSLKAASVGITLHT-ADYVFLLDPWWNPAVESQAIDRV-----HRIGQTN 772

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VFVY L+AQ TI+E +    + K  + D ++N  K 
Sbjct: 773 NVFVYRLLAQGTIEEKIHHLQKEKRDLFDSIVNDSKA 809


>gi|326317215|ref|YP_004234887.1| SNF2-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374051|gb|ADX46320.1| SNF2-related protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 947

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y   +           + +G            +K  Q+               +   K
Sbjct: 687 ELYEAVRTGADKQVRRVLERRGFEGGLITILDALLKLRQVCCDPRLVKGLPDAHGMESAK 746

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQE 103
           +  L  ++    A    ++V   F   L    +                   +    ++ 
Sbjct: 747 LDRLAELLPALVAEGRRVLVFSQFTGMLELAGQRLDALGLTWLALTGATAPRQRASVVRC 806

Query: 104 WNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +    G  P+L A   + G GLNL    + +V    WW+    +         R  + 
Sbjct: 807 FQDPSAEGSAPILLASLKAGGTGLNLTA-ADTVVHLDPWWNPAVME-----QASARAHRI 860

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + VFV++L+A+ +I+E +L+    K  + D +L 
Sbjct: 861 GQDKPVFVHHLVAEGSIEERMLELQARKQALADGVLG 897


>gi|296505669|ref|YP_003667369.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296326721|gb|ADH09649.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 918

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|163942929|ref|YP_001647813.1| non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865126|gb|ABY46185.1| Non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 918

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + +     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 755 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|260906271|ref|ZP_05914593.1| putative helicase [Brevibacterium linens BL2]
          Length = 1041

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     E+   ++            +   K  Q+ N   +   +         K++  E
Sbjct: 811  LYQSVVAEMMGRIEESSGIERRGLVLAAMTKLKQVCNHPAHLLHDGSAIGQRSGKLERFE 870

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEG 107
             I+ +       ++    F      L                   +  +    ++++ E 
Sbjct: 871  EIMSETLAEGDRVLCFTQFTDFGEMLVPHLAAKFDTDVAYLAGSTSKQRRTQIVKDFQEP 930

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    N +V    WW+       +E     R  + G KR V 
Sbjct: 931  DGPKIFVLSLKAGGTGLNLTA-ANQVVHLDRWWNPA-----VENQATDRAFRIGQKRRVQ 984

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V   I   T++E +   L  K  + D+++   +
Sbjct: 985  VRKFIGIGTLEERIDAILEEKKELADMVVGEGE 1017


>gi|49485834|ref|YP_043055.1| hypothetical protein SAS0928 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244277|emb|CAG42704.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 455

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/200 (37%), Positives = 114/200 (57%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAVY DE +  + +HD+K+  LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE-EDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKK 200
            + L+ K   Q+ L+ A+K 
Sbjct: 427 YKALQNKELTQEELMKAIKA 446


>gi|302335213|ref|YP_003800420.1| SNF2-related protein [Olsenella uli DSM 7084]
 gi|301319053|gb|ADK67540.1| SNF2-related protein [Olsenella uli DSM 7084]
          Length = 1079

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 34/227 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y   ++ L   L  +  EA         ++ ++  QL        ++    E    K+
Sbjct: 856  RLYQAHEQALRVSLSRQTDEAFGRGKIQVLAELMRLRQLCCDPRLLYDDY---EGGSAKL 912

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
              +  ++     ++  +++   F S L+                       +       +
Sbjct: 913  ATVMDLVGSVVDSSHKMLLFSQFTSYLSLIASELDARGVRYYTITGATPKHRRLELADAF 972

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  + P+      + G GLNL  G +++V    WW+              R  + G  R 
Sbjct: 973  NADETPVFLISLKAGGTGLNL-VGASVVVHADPWWNAAAQD-----QATDRAHRIGQTRD 1026

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--------NALKKETI 203
            V VY +IA++TI++ +L     KS + + ++        +AL+KE +
Sbjct: 1027 VSVYKVIAKDTIEDRILALQEVKSDLAEQVIGVGGGAGLSALRKEDL 1073


>gi|229094348|ref|ZP_04225422.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
 gi|228689026|gb|EEL42851.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-42]
          Length = 855

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229158809|ref|ZP_04286867.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
 gi|228624793|gb|EEK81562.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 4342]
          Length = 855

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|300785422|ref|YP_003765713.1| helicase [Amycolatopsis mediterranei U32]
 gi|299794936|gb|ADJ45311.1| putative helicase [Amycolatopsis mediterranei U32]
          Length = 1005

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     E+   ++         +  +   K  Q+ N   +   +         K+  LE
Sbjct: 775 LYCAIVDEMMKKIENSQGIKRRGHILAAITKLKQVCNHPAHLLHDGSPIGQRSGKVTRLE 834

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            I+ +   +   ++    +      L                 G         ++ +  G
Sbjct: 835 EILAEILASGDRVLCFTQYTEFGHLLVPHLSDRLGAEVAFLHGGLAKGARDAIVERFQAG 894

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +L     + G GL L      ++    WW+       +E     R  + G +R V 
Sbjct: 895 DGPRILVLSLKAGGSGLTLTA-AGQVLHLDRWWNPA-----VENQATDRAFRIGQRRNVQ 948

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V   +   TI+E +   +  K  +  +++  
Sbjct: 949 VRKFVCPGTIEERIDSLITRKRALAGMVVGE 979


>gi|315128428|gb|EFT84436.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329729408|gb|EGG65813.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 452

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 254 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|229099671|ref|ZP_04230598.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
 gi|228683741|gb|EEL37692.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-29]
          Length = 855

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   + S    L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|196045190|ref|ZP_03112423.1| putative helicase [Bacillus cereus 03BB108]
 gi|229184042|ref|ZP_04311255.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
 gi|196024192|gb|EDX62866.1| putative helicase [Bacillus cereus 03BB108]
 gi|228599425|gb|EEK57032.1| Helicase, SWF/SNF [Bacillus cereus BGSC 6E1]
          Length = 1064

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++ + +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLLSI 1053


>gi|118477275|ref|YP_894426.1| SWF/SNF family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|118416500|gb|ABK84919.1| helicase, SWF/SNF family [Bacillus thuringiensis str. Al Hakam]
          Length = 1064

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++ + +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLLSI 1053


>gi|229178258|ref|ZP_04305628.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
 gi|228605137|gb|EEK62588.1| Helicase, SWF/SNF [Bacillus cereus 172560W]
          Length = 1064

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                     + +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPVQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            AQ TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|310640172|ref|YP_003944930.1| helicase, swf/snf [Paenibacillus polymyxa SC2]
 gi|309245122|gb|ADO54689.1| Helicase, SWF/SNF [Paenibacillus polymyxa SC2]
          Length = 1121

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K Q E    L  E          +   +  QL      + E          K
Sbjct: 898  KLYTAYLAKLQHETLKHLNEEGFQKNRIKILAGLTRLRQLCCHPGLFIEGYT---GSSAK 954

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L  II +   +   +++   F + L                        +       
Sbjct: 955  FEQLLEIITECLGSGKRMLIFSQFTTMLQMVGRELSREGVPYFYLDGQTPAPERVELCSR 1014

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+       +E     R  + G K+
Sbjct: 1015 FNEGERELFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQATNRAHRMGQKK 1068

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ T+++ + +  + K  + D ++ 
Sbjct: 1069 VVQVIRLVAQGTVEDKMYELQQKKKNLIDQVIQ 1101


>gi|326943035|gb|AEA18931.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 918

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKI 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|253574567|ref|ZP_04851908.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
 gi|251846272|gb|EES74279.1| non-specific serine/threonine protein kinase [Paenibacillus sp. oral
            taxon 786 str. D14]
          Length = 1053

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK---EVHDEKI 56
            + Y     EL   +  ++  A          +  Q+ +        +  K        K+
Sbjct: 814  RLYQSVTAELLDQIGSQSGIARKGLVLSSLTRLKQICDHPELVVGSRPAKTAAFGRSGKM 873

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQE 103
            + L  +++    N    ++   +      LQ                G    +    ++ 
Sbjct: 874  ERLGELLDMIMDNGEGALIFTQYVRMGELLQERLTERYGVRPFFLHGGVPKAERDQMVRA 933

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + EG+  P+      + G GLNL    N +V +  WW+       +E     R  + G +
Sbjct: 934  FQEGEGSPIFVLSLKAGGVGLNLTR-ANHVVHYDRWWNPA-----VENQATDRVFRIGQQ 987

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V V+ LI Q T++E + + +  K T+ + ++ + ++
Sbjct: 988  KNVEVHKLICQGTLEERIDELIERKKTLSEQVVGSGEQ 1025


>gi|228936530|ref|ZP_04099326.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823118|gb|EEM68954.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 855

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|15595996|ref|NP_249490.1| helicase [Pseudomonas aeruginosa PAO1]
 gi|218893257|ref|YP_002442126.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|9946691|gb|AAG04188.1|AE004515_4 probable helicase [Pseudomonas aeruginosa PAO1]
 gi|218773485|emb|CAW29297.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 663

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 430 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 489

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 490 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 549

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 550 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 603

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 604 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 644


>gi|51244847|ref|YP_064731.1| helicase [Desulfotalea psychrophila LSv54]
 gi|50875884|emb|CAG35724.1| probable helicase [Desulfotalea psychrophila LSv54]
          Length = 1399

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 24/209 (11%)

Query: 4    YHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   ++     L+G            ++ +K  Q                +   K+K   
Sbjct: 1180 YEALRQNALDILEGNKDRKGRHLQILTEIMKLRQACCNPRL---IDKNTSISSSKMKVFG 1236

Query: 61   VIIEKANA--APIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGK 108
             ++E+        +V   F   L  +++   +     +              + ++  GK
Sbjct: 1237 DVVEELLGGNHKALVFSQFIGHLHIIREYLDERGISYQYLDGSTSSKMREKGVNDFQAGK 1296

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L      + G GLNL    + ++    WW+       IE     R  + G  R V VY
Sbjct: 1297 GDLFLISLKAGGLGLNLTA-ADYVLHMDPWWNPA-----IEDQASDRAHRIGQTRPVTVY 1350

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+++N+I+E +++  + K  +   LL  
Sbjct: 1351 RLVSKNSIEEKIVKLHQEKRDLAGSLLEG 1379


>gi|125974159|ref|YP_001038069.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714384|gb|ABN52876.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 452

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 94/211 (44%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y +  ++ Y +L    + A N  ++ ++  QL  G +  D+    ++V D K+KALE
Sbjct: 233 LKKYKELVKQSYTELSAGEVTATNILTRLLRLSQLTGGFIGSDDGGKIEQVSDAKLKALE 292

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKI 109
            I+E        ++V   F  ++  +           A   G T D+     +   +   
Sbjct: 293 DILESSIQEGHKLVVIARFIPEIHAICRLLEKKNIGYACIYGATKDRQEQVNRFQYDPDC 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +Q   RI      + G K      Y
Sbjct: 353 MVFVGQIATAGLGITLTA-ASTMVFYSLDYSMSNFEQTKARI-----HRVGQKNGCTYIY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA+ T+D  +L  LR K+ +  +L++  +K
Sbjct: 407 LIAKGTVDSKILTALRNKADLAKMLIDDYRK 437


>gi|308178507|ref|YP_003917913.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307745970|emb|CBT76942.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1049

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDL-QGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     E+   +   E IE      +   K  Q+ N       +         K+  LE
Sbjct: 819  LYQSVVGEMMDKIANSEGIERRGLVLAAMAKLKQVCNHPAQLLHDGSTVAGRSGKVARLE 878

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
             ++E+       ++    +              L         G +  K    +Q +   
Sbjct: 879  ELLEQIVAEGDKVLCFTQYTEFAQMLLPHLASRLDAEVFYLHGGTSRAKRTELVQRFQAT 938

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P +      + G GLNL    N ++    WW+       +E     R  + G KR V 
Sbjct: 939  DRPAIFLLSLKAGGTGLNLTA-ANHVLHLDRWWNPA-----VENQATDRAFRIGQKRNVQ 992

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   I + T++E + + ++ K  + DL++   + 
Sbjct: 993  VRKFICRGTLEERIDEMIKDKQALADLVVGDGEG 1026


>gi|87300749|ref|ZP_01083591.1| SNF2 related domain:DEAD/DEAH box helicase:Helicase C-terminal
            [Synechococcus sp. WH 5701]
 gi|87284620|gb|EAQ76572.1| SNF2 related domain:DEAD/DEAH box helicase:Helicase C-terminal
            [Synechococcus sp. WH 5701]
          Length = 1037

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 26/220 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY---DEEKHWKEVHDEK 55
            +K Y +   +    +    +   +        K  Q+ N         E          K
Sbjct: 806  VKLYRRTVEDTLDAIARAPVGQKHGQVLGLLTKLKQVCNHPALMLKEGEVGAGFSARSAK 865

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQ 102
            ++ LE I+E+        ++   F                +         +  +    + 
Sbjct: 866  LQRLEEIVEEVIAAGDRALLFTQFAEWGHLLQTHLQQRFHQEVPFLYGSTSKGERQAMVD 925

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             + +      L      + G GLNL    + +     WW+       +E     R  + G
Sbjct: 926  RFQDDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIG 979

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                V V+  I   +++E + + +R K+ + + ++ + ++
Sbjct: 980  QTNRVMVHKFITSGSVEEKIDRMIREKARLAEDIVGSGEE 1019


>gi|229542960|ref|ZP_04432020.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
 gi|229327380|gb|EEN93055.1| SNF2 helicase associated domain protein [Bacillus coagulans 36D1]
          Length = 1081

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + E    L   +         +   +  QL      + E    +     K++ L  +
Sbjct: 865  DRIRHETAQTLAEGDFNRNRIKILAGLTRLRQLCCHPALFVENYRGE---SGKLEQLVEL 921

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
                  N   +++   F+S L  ++                    +       +N G+  
Sbjct: 922  AHTAIENGKRLLIFSQFSSMLQLIRTRLSDEGIDSFYLDGQTPSRERVEMADRFNSGEKN 981

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G + +V + LWW+       +E     R  + G K  V V  L
Sbjct: 982  VFLISLKAGGTGLNLT-GADTVVLYDLWWNPA-----VEEQAAGRAHRIGQKNVVQVIRL 1035

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            IA+ TI+E + +  + K  + + ++ 
Sbjct: 1036 IARGTIEEKIYELQQKKKELIEKVIQ 1061


>gi|229828003|ref|ZP_04454072.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
 gi|229792597|gb|EEP28711.1| hypothetical protein GCWU000342_00052 [Shuttleworthia satelles DSM
            14600]
          Length = 1314

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y      +   + G             ++  K  Q+      + E          K K
Sbjct: 1094 RLYDAQVARMRAMIAGAGEAYNRNKIQVLAELTKIRQICCDPSIFVEGYR---GKSAKRK 1150

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN 105
            A   +I         ++V   F S LA L++   + +             +    +  +N
Sbjct: 1151 ACLDLIGSAIDGGHKMLVFSQFTSMLALLEEDLSRAKIPFYKITGATGKEERLRLVHAFN 1210

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + + P+      + G GLNL  G ++++ +  WW+L             R  + G  + V
Sbjct: 1211 DDETPVFLISLKAGGTGLNLT-GADLVIHYDPWWNLAAQ-----NQATDRAHRIGQTKDV 1264

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ LIA+ TI++ +L+    K  + D +L+ 
Sbjct: 1265 SVFRLIAKGTIEDRILEMQEKKKDLADAILSG 1296


>gi|229118736|ref|ZP_04248087.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
 gi|228664704|gb|EEL20195.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-3]
          Length = 855

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   + S    L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229187464|ref|ZP_04314606.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
 gi|228595985|gb|EEK53663.1| Helicase, SNF2/RAD54 [Bacillus cereus BGSC 6E1]
          Length = 855

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKNQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|23100530|ref|NP_693997.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22778763|dbj|BAC15031.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1056

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q+E     +            +   +  Q+      + E     E    K++ L   
Sbjct: 840  RQVQQEAVQSFKENGFQQNRMKILAGLTRLRQICCHPSMFIENY---EGASGKLEQLMET 896

Query: 63   IEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            I+    N   +++   F S    +                  +  +     + +N G+  
Sbjct: 897  IKTALDNGKRMLIFSQFTSMHEIIQERLKKEGYGYFYLHGQTSSKERVEMSERFNHGEND 956

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G + ++ F LWW+       +E     R  + G K+ V V  L
Sbjct: 957  IFLISLKAGGTGLNLT-GADTVILFDLWWNPA-----VEDQATGRAHRFGQKKVVQVIRL 1010

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TI+E +    + K  + D ++ 
Sbjct: 1011 VTEGTIEEKIYDLQQRKRELIDQVIQ 1036


>gi|258427143|ref|ZP_05688065.1| SNF2 family protein [Staphylococcus aureus A9299]
 gi|257849921|gb|EEV73880.1| SNF2 family protein [Staphylococcus aureus A9299]
          Length = 455

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|229124753|ref|ZP_04253933.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
 gi|228658730|gb|EEL14390.1| Helicase, SNF2/RAD54 [Bacillus cereus 95/8201]
          Length = 855

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|116048717|ref|YP_792483.1| helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583938|gb|ABJ09953.1| probable helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 663

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 430 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 489

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 490 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 549

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 550 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 603

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 604 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 644


>gi|66395664|ref|YP_240070.1| ORF008 [Staphylococcus phage 47]
 gi|88195255|ref|YP_500058.1| SNF2 family protein [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|258445562|ref|ZP_05693744.1| phage helicase [Staphylococcus aureus A6300]
 gi|258455568|ref|ZP_05703525.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|297207823|ref|ZP_06924257.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|62636088|gb|AAX91199.1| ORF008 [Staphylococcus phage 47]
 gi|87202813|gb|ABD30623.1| SNF2 family N-terminal domain protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|257855609|gb|EEV78542.1| phage helicase [Staphylococcus aureus A6300]
 gi|257862256|gb|EEV85027.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|296887539|gb|EFH26438.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus ATCC
           51811]
          Length = 455

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|229032866|ref|ZP_04188821.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
 gi|228728411|gb|EEL79432.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1271]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ LI   T++E + + L  K ++ + ++
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVI 835


>gi|254245052|ref|ZP_04938374.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
 gi|126198430|gb|EAZ62493.1| hypothetical protein PA2G_05937 [Pseudomonas aeruginosa 2192]
          Length = 663

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEV 51
           + Y   +    R++  ++   G            +K  Q+         ++      + +
Sbjct: 430 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDGARSGRAL 489

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 490 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALIEDALRQRGVDYVLLTGETRDRRAPV 549

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 550 QRFQSGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 603

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 604 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 644


>gi|146282998|ref|YP_001173151.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145571203|gb|ABP80309.1| helicase/SNF2 family domain protein [Pseudomonas stutzeri A1501]
          Length = 773

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 4   YHKFQ----RELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEK--HWKEVHDEK 55
           Y   +    R++  +++ + +           +K  Q+         +     +     K
Sbjct: 547 YETLRLAMDRKVREEIERKGLARSQMVILEALLKLRQVCCDLRLLKGDAVATSRGSSSGK 606

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWN 105
           + +L  ++++  +    +++   F S LA +++                D     ++ + 
Sbjct: 607 LDSLLDMLDELMSEGRRVLLFSQFTSMLALIEQALLKRGITYVKLTGETDDRRTPVERFQ 666

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++PL      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 667 AGEVPLFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPV 720

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LI + T++E + +    K+ +   +L  
Sbjct: 721 FVYRLITRGTVEERIRELQARKAELAAGVLEG 752


>gi|228917853|ref|ZP_04081390.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228841789|gb|EEM86899.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|33239499|ref|NP_874441.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus subsp. marinus
            str. CCMP1375]
 gi|33237024|gb|AAP99093.1| Superfamily II DNA/RNA helicases, SNF2 family [Prochlorococcus
            marinus subsp. marinus str. CCMP1375]
          Length = 1062

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIK 57
             Y +   +   +L    I            +  Q+ N      +E   ++   +   K++
Sbjct: 829  LYKQTVEKSLDELASLPIGQRQGKTLGLLTRLKQICNHPAIALKETQVEKNFLLRSSKLQ 888

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW 104
             LE I+++   +    ++   F                        G    K    I  +
Sbjct: 889  RLEEILQEVKESHDRALLFTQFAEWGHLLQAYLQTKWESEVPFLHGGTPKGKRQEMIDRF 948

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +      +      + G GLNL    N +     WW+       +E     R  + G K
Sbjct: 949  QDDPRGPNIFLLSLKAGGVGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAYRIGQK 1002

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++V V+  I   TI+E + Q +  K+ + + ++ + +
Sbjct: 1003 KSVIVHKFITTGTIEEKINQMILEKTELAENIVGSGE 1039


>gi|229076456|ref|ZP_04209418.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
 gi|228706642|gb|EEL58853.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-18]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   + S    L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|260221226|emb|CBA29577.1| hypothetical protein Csp_A12850 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 784

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 18/186 (9%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
            +     +K  Q+              ++   K+ AL  ++         ++V   F   
Sbjct: 557 ISILDALLKLRQVCCDPYLVKGSDIAPDMERAKLHALTDLLVPLVDEGRRVLVFSQFTEL 616

Query: 81  LARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           L  +            +        +    +Q +   ++P+L     + G GLNL    +
Sbjct: 617 LELIADALSALRLPFLSLTGNTCPAQRGDIVQRFQNQEVPVLLVSLKTGGVGLNLTA-AD 675

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++    WW+       +E     R  + G  + VFVY L+ + +I+E +L+    K  +
Sbjct: 676 TVIHMDPWWNPA-----VEEQATARAHRIGQDQPVFVYKLVVEGSIEERMLELQARKLAL 730

Query: 191 QDLLLN 196
            D +L 
Sbjct: 731 SDSVLG 736


>gi|229105848|ref|ZP_04236475.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
 gi|228677569|gb|EEL31819.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-28]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   + S    L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYISMGNMLKSILEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|218960404|ref|YP_001740179.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729061|emb|CAO79972.1| hypothetical protein CLOAM0057 [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1065

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 20/210 (9%)

Query: 2    KQYHK---FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y +      +       E     +  +   K  Q+ N     + +   +     K++ 
Sbjct: 841  KLYLQILDMVHKKLLPEGKEMPSYIHILAALTKLRQVCNHPHLANGDILPELEASSKLEQ 900

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEG 107
            L  ++ +       +++   F   L+ ++           +  G+T D+           
Sbjct: 901  LLELVTEATNAGHKVLIFSQFVQMLSIIRKVLEANSLPYCYLDGQTKDRVTPIKSFETNP 960

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I L      + G GLNL    + ++ +  WW+      M+E   + R  + G    V V
Sbjct: 961  EIKLFLISLKAGGTGLNLTA-ADTVILYDPWWNP-----MVENQAIDRTHRIGQTHKVQV 1014

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + LI + T++E +LQ  + K  + + ++  
Sbjct: 1015 FRLITKGTVEEKILQLQQNKRELFETVIEG 1044


>gi|152986052|ref|YP_001350061.1| helicase [Pseudomonas aeruginosa PA7]
 gi|150961210|gb|ABR83235.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 773

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 26/221 (11%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---- 51
           + Y   +    R++  ++   G            +K  Q+         ++         
Sbjct: 540 ELYETVRLALDRKVREEIARRGLARSRIVILEALLKLRQVCCDTRLLQRQEDSARGGRAA 599

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTI 101
              K+  L  ++++  A    +++   F S LA ++ A  Q                  +
Sbjct: 600 SSGKLAYLLDMLDELIAEGRRVLLFSQFTSMLALVEDALRQRGVDYVLLTGETRDRRAPV 659

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q +  G++P+      + G GLNL    + ++ +  WW+       +E     R  + G 
Sbjct: 660 QRFQGGQVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQASDRAYRIGQ 713

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + VFVY LIA+ T++E +    + K+ + D L +    + 
Sbjct: 714 DKPVFVYRLIARGTVEEKIQHLQQEKAALADGLFSEGNGDG 754


>gi|152975221|ref|YP_001374738.1| non-specific serine/threonine protein kinase [Bacillus cereus subsp.
            cytotoxis NVH 391-98]
 gi|152023973|gb|ABS21743.1| Non-specific serine/threonine protein kinase [Bacillus cytotoxicus
            NVH 391-98]
          Length = 1066

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 851  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 907

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 908  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 967

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 968  FLISLKAGGTGLNLT-GADTVILYDLWWNPSVEQ-----QAADRAYRMGQKNTVQVIKLV 1021

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A+ TI+E + +   +K  +   ++   +++   +
Sbjct: 1022 ARGTIEEKIHELQESKKNLIAEVIEPGEEKLFSI 1055


>gi|228930248|ref|ZP_04093256.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829389|gb|EEM75018.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229141981|ref|ZP_04270506.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
 gi|228641270|gb|EEK97576.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST26]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|149279882|ref|ZP_01886009.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter sp.
            BAL39]
 gi|149229472|gb|EDM34864.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter sp.
            BAL39]
          Length = 1139

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 20/208 (9%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  ++RE+   L  +       +  N     +K  Q+ N      +++++     +  
Sbjct: 913  KVYDAYEREIRDYLTNQTDAEIASDTMNVLKGIMKLRQICNSPSLLSDDEYYGASSAKME 972

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWNEGK 108
              LE I+ K+    I+V   F   L         R                 +  + + +
Sbjct: 973  VLLEQILSKSPQHKILVFSQFVGMLNLIRAELEKRQVSFAMLTGQTRNRQAVVDRFQDDE 1032

Query: 109  -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I +      + G GLNL    + +     WW+       +E   + R  + G  + V  
Sbjct: 1033 SIRVFLISLKAGGVGLNLTQ-ADYVYIVDPWWNPA-----VENQAIDRTYRIGQHKNVVA 1086

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              LI  +T++E +++    K  +   L+
Sbjct: 1087 VRLICPDTVEEKIMEMQEHKRDLVTDLV 1114


>gi|325000735|ref|ZP_08121847.1| putative ATP-dependent helicase [Pseudonocardia sp. P1]
          Length = 571

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 27/214 (12%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKE-----VHDEK 55
            Y     ++   ++G +      N  +   K  Q+ N       +              K
Sbjct: 329 LYRTVVDDMMEKIEGSDGIERRGNVLAAMSKLKQVCNHPAQLLHDGSPIHRAGGAHRSGK 388

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQ 102
           +  LE I+E        +++   +    A L+                G    +    + 
Sbjct: 389 VARLEEILESVLAAGDKVLLFTQYTEFAAMLRPHLSARFDTEVLYLHGGTPKKRRDEMVA 448

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  +G   +      + G GL L    N ++    WW+       +E     R  + G 
Sbjct: 449 RFQGDGGPSVFLLSLKAGGTGLTLTA-ANHVIHLDRWWNPA-----VEDQATDRAFRIGQ 502

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           KR+V V   +   T++E +   + +K ++ DL++
Sbjct: 503 KRSVQVRKFVCPGTVEERIDTLVASKRSLSDLVV 536


>gi|229020462|ref|ZP_04177215.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
 gi|229026691|ref|ZP_04183032.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228734643|gb|EEL85296.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1272]
 gi|228740838|gb|EEL91083.1| Helicase, SNF2/RAD54 [Bacillus cereus AH1273]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  +++     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQDIIERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   +      L++                    +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKRMLEEKFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229164183|ref|ZP_04292118.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
 gi|228619300|gb|EEK76191.1| Helicase, SNF2/RAD54 [Bacillus cereus R309803]
          Length = 840

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 617 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 676

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                    +    I+++ 
Sbjct: 677 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEENFGQRVLFLNGSVPKKERDKMIEQFQ 736

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 737 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 790

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 791 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 822


>gi|163798351|ref|ZP_02192275.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159176371|gb|EDP60962.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1048

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 830  YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 886

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              +++    N    +V   F + LA             +              +  +  G
Sbjct: 887  LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 946

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+       +E     R  + G +R V +
Sbjct: 947  TADVFLISLRAGGTGLNLTA-ADYVVHLDPWWNPA-----VEDQASDRAHRIGQERPVTI 1000

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI Q++I+E +L+  R K  +   +L   +
Sbjct: 1001 YRLIMQDSIEEQILRLHRDKRDLAADILEGGE 1032


>gi|228948966|ref|ZP_04111239.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810722|gb|EEM57070.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|229199361|ref|ZP_04326026.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
 gi|228584075|gb|EEK42228.1| Helicase, SNF2/RAD54 [Bacillus cereus m1293]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E   K++     K   
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKETEPKDIIERSMKTST 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKDVLEKHFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|327481349|gb|AEA84659.1| helicase/SNF2 domain-containing protein [Pseudomonas stutzeri DSM
           4166]
          Length = 773

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 80/212 (37%), Gaps = 24/212 (11%)

Query: 4   YHKFQ----RELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEK--HWKEVHDEK 55
           Y   +    R++  +++ + +           +K  Q+         +     +     K
Sbjct: 547 YETLRLAMDRKVRDEIERKGLARSQMVILEALLKLRQVCCDLRLLKGDAVATSRGSSSGK 606

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWN 105
           + +L  ++++  +    +++   F S LA +++                D     ++ + 
Sbjct: 607 LDSLLDMLDELMSEGRRVLLFSQFTSMLALIEQALLKRGITYVKLTGETDDRRTPVERFQ 666

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G++PL      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 667 AGEVPLFLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPV 720

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LI + T++E + +    K+ +   +L  
Sbjct: 721 FVYRLITRGTVEERIRELQARKAELAAGVLEG 752


>gi|310823284|ref|YP_003955642.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309396356|gb|ADO73815.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1081

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 3    QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y +   E    +              +  +  ++  Q+           +       K+
Sbjct: 856  LYREVLEESRRKVSESIEKVGFKRSRVSILAALMRLRQVCCDPRLLKLPPNTLLPSSAKL 915

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWN 105
            +    +++   A     +V   F   L  L+           +  GRT D+         
Sbjct: 916  ERFGQLVDDLVAEGHRALVFSQFTEMLELLKTEADKRGLNYLYLDGRTKDRMAKVDDFNR 975

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL F    + G GLNL    + ++ +  WW+       +E     R  + G  RAV
Sbjct: 976  PEGPPLFFISLKAGGTGLNLTA-ADYVIHYDPWWNPA-----VEDQATDRTHRIGQTRAV 1029

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Y LI + T++E +L   R K  +   +L 
Sbjct: 1030 ISYKLITRGTVEEKILSLQRRKKELAAGVLG 1060


>gi|115378604|ref|ZP_01465757.1| Snf2 family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364391|gb|EAU63473.1| Snf2 family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1130

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 3    QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y +   E    +              +  +  ++  Q+           +       K+
Sbjct: 905  LYREVLEESRRKVSESIEKVGFKRSRVSILAALMRLRQVCCDPRLLKLPPNTLLPSSAKL 964

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWN 105
            +    +++   A     +V   F   L  L+           +  GRT D+         
Sbjct: 965  ERFGQLVDDLVAEGHRALVFSQFTEMLELLKTEADKRGLNYLYLDGRTKDRMAKVDDFNR 1024

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                PL F    + G GLNL    + ++ +  WW+       +E     R  + G  RAV
Sbjct: 1025 PEGPPLFFISLKAGGTGLNLTA-ADYVIHYDPWWNPA-----VEDQATDRTHRIGQTRAV 1078

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Y LI + T++E +L   R K  +   +L 
Sbjct: 1079 ISYKLITRGTVEEKILSLQRRKKELAAGVLG 1109


>gi|282898570|ref|ZP_06306558.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281196438|gb|EFA71347.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 1427

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 72/210 (34%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +         ++ ++  +                +   K++ L
Sbjct: 1208 YEALRRQAISKLNESDADPGKKHLQVLAEIMRLRRACCNPSLVMPNTD---LSSSKLQLL 1264

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEG 107
              ++ +   N    +V   F   L              +       + +   ++  +  G
Sbjct: 1265 GEVLAELLENHHKALVFSQFVDHLHIIRNYLESKSIKYQYLDGSTPMAERKRSVDSFQAG 1324

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1325 DGDIFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQQRPVTI 1378

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI++ +++    K  + D LL  
Sbjct: 1379 YRLVAKDTIEDKIVELHHHKRDLADTLLEG 1408


>gi|229017133|ref|ZP_04174048.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
 gi|229023310|ref|ZP_04179819.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228738015|gb|EEL88502.1| Helicase, SWF/SNF [Bacillus cereus AH1272]
 gi|228744153|gb|EEL94240.1| Helicase, SWF/SNF [Bacillus cereus AH1273]
          Length = 1064

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   K++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEIIEPGKEK 1049


>gi|70729334|ref|YP_259071.1| helicase/SNF2 domain-containing protein [Pseudomonas fluorescens
           Pf-5]
 gi|68343633|gb|AAY91239.1| helicase/SNF2 family domain protein [Pseudomonas fluorescens Pf-5]
          Length = 875

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 22/214 (10%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   +    +++  ++  + +           +K  Q+       ++    +     K+
Sbjct: 644 VYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDSPPTRGSSSGKL 703

Query: 57  K--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
                 +         I++   F S L+ ++    +                  ++++  
Sbjct: 704 DSLMEMLEELFEEGRRILLFSQFTSMLSLIEAELKRRNIAYALLTGQTRDRRTPVRDFQS 763

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK+ +      + G GLNL    + ++ +  WW+        E     R  + G ++ VF
Sbjct: 764 GKLQIFLISLKAGGVGLNLTE-ADTVIHYDPWWNPAT-----ESQATDRAYRIGQEKPVF 817

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           VY LIA+ T++E +    + KS +   +L+  K 
Sbjct: 818 VYKLIARGTVEEKIQHLQQEKSDLAAGVLDGRKA 851


>gi|291436286|ref|ZP_06575676.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291339181|gb|EFE66137.1| SNF2/RAD54 family helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 692

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 76/217 (35%), Gaps = 26/217 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            Y    RE    ++                   Q+ +    Y +E+H +           
Sbjct: 461 LYEAVVRESLLAIESAQGMGRRGLVLKLLTSLKQICDHPALYLKEEHARAGGGRLAARSG 520

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++         +V   +      +                G  + +    + 
Sbjct: 521 KLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAERAVPVDLLHGGTPVPERERMVD 580

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 581 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 634

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V V+ LI + T+++ + + L++K  + D +L + +
Sbjct: 635 QPVQVHRLITEGTVEDRIAEMLQSKRALADAILGSGE 671


>gi|229169956|ref|ZP_04297649.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
 gi|228613474|gb|EEK70606.1| Helicase, SNF2/RAD54 [Bacillus cereus AH621]
          Length = 855

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + +     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|239927952|ref|ZP_04684905.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 701

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 76/217 (35%), Gaps = 26/217 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            Y    RE    ++                   Q+ +    Y +E+H +           
Sbjct: 470 LYEAVVRESLLAIESAQGMGRRGLVLKLLTSLKQICDHPALYLKEEHARAGGGRLAARSG 529

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++         +V   +      +                G  + +    + 
Sbjct: 530 KLALLDELLDTLLAEDGSALVFTQYVGMARLITAHLAERAVPVDLLHGGTPVPERERMVD 589

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 590 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 643

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V V+ LI + T+++ + + L++K  + D +L + +
Sbjct: 644 QPVQVHRLITEGTVEDRIAEMLQSKRALADAILGSGE 680


>gi|228964841|ref|ZP_04125946.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228794779|gb|EEM42280.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 1064

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229069404|ref|ZP_04202693.1| Helicase, SWF/SNF [Bacillus cereus F65185]
 gi|228713543|gb|EEL65429.1| Helicase, SWF/SNF [Bacillus cereus F65185]
          Length = 1064

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   + +
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEGK 1049


>gi|308275178|emb|CBX31775.1| hypothetical protein N47_N26000 [uncultured Desulfobacterium sp.]
          Length = 889

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 76/223 (34%), Gaps = 33/223 (14%)

Query: 1   MKQYHKFQRELYC-------DLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKH 47
           MK Y    R+          +L+   +E           S  +K  QL N    Y+    
Sbjct: 650 MKTYSDLSRKQVLLYNKVVEELKRAIVETEGIQRKGLVLSSIIKFKQLCNHPDQYNGTTE 709

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTL 94
           ++E    K   L  I          ++V   F                R       G  +
Sbjct: 710 YEEKDSGKFARLREICETIYEKREKVLVFTQFKEMTEPLSVFLESIFFRKGLILHGGVPV 769

Query: 95  DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    ++E+     IP +     + G GLNL    N ++ F  WW+       +E    
Sbjct: 770 SRRKKIVEEFQSQSYIPFMVLSLKAGGVGLNLTE-ANHVIHFDRWWNPA-----VEDQAT 823

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+ V V+  I + T++E +   L  K  + + +++
Sbjct: 824 DRAFRIGQKKNVIVHKFITKGTVEEKIDNMLEEKKKLSNDVIS 866


>gi|196041238|ref|ZP_03108533.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196027946|gb|EDX66558.1| putative helicase [Bacillus cereus NVH0597-99]
          Length = 1064

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMYELQESKKNLIAEVIEPGEEK 1049


>gi|114777053|ref|ZP_01452073.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
 gi|114552574|gb|EAU55034.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Mariprofundus
            ferrooxydans PV-1]
          Length = 1095

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 23/209 (11%)

Query: 2    KQYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y       Q+ +   +    +           +K  Q+          +        K
Sbjct: 870  ELYESVRLAMQKRVRDAVASMGVAQSQIVVLDALMKMRQVCCDPRLVSGLQGALPA-SAK 928

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN 105
            +  L  ++ +       +++   F S L  ++                       ++ + 
Sbjct: 929  LTMLMEMLPEMIEEGRRVLLFSQFTSMLKLIEAEVTAAGIDYVKLTGQTRDRETPVERFQ 988

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++PL      + G GLNL    + ++ +  WW+       +E     R  + G  +AV
Sbjct: 989  NGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VEAQATDRAHRIGQDKAV 1042

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            FVY L+ + T++E +L+    K  + D +
Sbjct: 1043 FVYKLLTEGTVEERILEMQDRKRELADSI 1071


>gi|325113188|ref|YP_004277134.1| putative helicase [Acidiphilium multivorum AIU301]
 gi|325052655|dbj|BAJ82992.1| putative helicase [Acidiphilium multivorum AIU301]
          Length = 918

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 22/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   +L   L+     A         V+  Q+ N   ++  + +W E    K + L 
Sbjct: 686 LYSEAVGDLARSLEEAEGMARRGLVLASLVRLKQICNHPAHWLNDGNWDEAGSGKFRRLR 745

Query: 61  VIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E        ++V   F                R       G  + +    +Q +  +
Sbjct: 746 EIAEAVAARQDKMLVFTQFREMVAPLAALLASVFGRDGLELHGGTPVRQRRTLVQRFQED 805

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++P       + G GL L    + +V F  WW+       +E     R  + G K  V 
Sbjct: 806 EEVPFFVLSLKAGGTGLTLTA-ASHVVHFDRWWNPA-----VEAQATDRAFRIGQKSNVL 859

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V+  I + T++E +   +  K ++   LL+   +
Sbjct: 860 VHKFICRGTVEERIDAMIEAKQSLSTELLSGENE 893


>gi|119489573|ref|ZP_01622333.1| SNF2-related helicase [Lyngbya sp. PCC 8106]
 gi|119454485|gb|EAW35633.1| SNF2-related helicase [Lyngbya sp. PCC 8106]
          Length = 1061

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYD-----------EEKHWK 49
             Y K   +   D+             +  VK  Q+ N  +  +           E +   
Sbjct: 816  LYQKIVDQSLADIDSAAGIQRRGMILALLVKLKQVCNHPILLNGKATKTGKKKVETQGLS 875

Query: 50   EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDK 96
                 K++  + ++E+  +     IV   F              L R           +K
Sbjct: 876  LQSSGKLQRFKEMLEELLSEGDRAIVFTQFAEWGKVLQPYLEQQLNREVLFLYGATRKNK 935

Query: 97   DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  + +     P+      + G GLNL    N +  F  WW+       +E     
Sbjct: 936  REEMIDRFQQDPQGPPIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATD 989

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  R V V+  +   T++E +   + +K  + + ++ + +
Sbjct: 990  RVFRIGQTRNVQVHKFVCTGTLEEKIHDLIESKKVLAEQVVGSGE 1034


>gi|88857070|ref|ZP_01131713.1| helicase [Pseudoalteromonas tunicata D2]
 gi|88820267|gb|EAR30079.1| helicase [Pseudoalteromonas tunicata D2]
          Length = 1402

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 27/210 (12%)

Query: 4    YHKFQRELYCDLQGEN------IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   ++     L   +       +     ++  K  Q          +     +   K+ 
Sbjct: 1180 YEALRQTAITKLTEASNHSNAAEQRIRMLAELTKLRQACCHPALIMPDTT---LTSSKLA 1236

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
            AL  ++ +   N    ++   F   L              +         +    +  + 
Sbjct: 1237 ALNTLLIELQQNNHKALIFSQFVGHLALIKQHLDAQDISYQYLDGSTPTKERQQRVNAFQ 1296

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL    + ++    WW+       +E     R  + G +R V
Sbjct: 1297 RGEGDVFLISLKAGGSGLNLTA-ADYVIHMDPWWNPA-----VEEQASDRAHRMGQQRPV 1350

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             VY LIA+ TI+E ++   + K  + D LL
Sbjct: 1351 TVYRLIAKGTIEEQIVAMHQHKRDLADTLL 1380


>gi|229063904|ref|ZP_04200205.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
 gi|229136057|ref|ZP_04264813.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228647378|gb|EEL03457.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST196]
 gi|228716374|gb|EEL68082.1| Helicase, SNF2/RAD54 [Bacillus cereus AH603]
          Length = 855

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + +     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNIVERSMKTKT 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN 105
           +  +I   K      ++   +      L+                     +    I+++ 
Sbjct: 692 VMELIENIKDQNESCLIFTQYIGMGNMLKSMLEETFGQRVLFLNGSVPKKERDKMIEQFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|163795414|ref|ZP_02189381.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159179400|gb|EDP63931.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1385

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1167 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 1223

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              +++    N    +V   F + LA             +              +  +  G
Sbjct: 1224 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1283

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+       +E     R  + G +R V +
Sbjct: 1284 TADVFLISLRAGGTGLNLTA-ADYVVHLDPWWNPA-----VEDQASDRVHRIGQERPVTI 1337

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI Q++I+E +L+  R K  +   +L   +
Sbjct: 1338 YRLIMQDSIEEQILRLHRDKRDLAADILEGGE 1369


>gi|163796791|ref|ZP_02190749.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159178045|gb|EDP62592.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1385

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1167 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 1223

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              +++    N    +V   F + LA             +              +  +  G
Sbjct: 1224 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1283

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+       +E     R  + G +R V +
Sbjct: 1284 TADVFLISLRAGGTGLNLTA-ADYVVHLDPWWNPA-----VEDQASDRVHRIGQERPVTI 1337

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI Q++I+E +L+  R K  +   +L   +
Sbjct: 1338 YRLIMQDSIEEQILRLHRDKRDLAADILEGGE 1369


>gi|290956330|ref|YP_003487512.1| helicase [Streptomyces scabiei 87.22]
 gi|260645856|emb|CBG68947.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 968

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEE------KHWKEVHDE 54
            Y    RE    ++  +  A             Q+ +    Y +E               
Sbjct: 737 LYEAVVRESLLAIETADGMARRGLVLKLLGALKQICDHPALYLKEEPATATGERFVGRSG 796

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           K+  L+ +++         +V   +      +                G  + +    + 
Sbjct: 797 KLALLDELLDTLLSEDGSALVFTQYVGMARLITAHLAARAVPVELLHGGTPVTEREHMVD 856

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  
Sbjct: 857 RFQSGATPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQT 910

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + V V+ LI + T+++ + + L +K  + D +L + +     +
Sbjct: 911 QPVQVHRLITEGTVEDRIAEMLESKRALSDAVLGSGEAALTEL 953


>gi|222528088|ref|YP_002571970.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222454935|gb|ACM59197.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1112

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 23/209 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +K     ++E   DL+G         S   +  Q+      + +     E    KI+  E
Sbjct: 896  LKAREDIKKE--IDLKGFEKSKIKIFSIFTRLRQICCHPKLFLQNY---EGSSGKIELFE 950

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             I+E    +   ++V   +   L                       ++    + ++N G+
Sbjct: 951  EILEDVIESGHRVVVFSQWVEMLKILEERIKEKGFEYFYLDGSTKSEERIDMVNKFNSGQ 1010

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+       +E   + R  + G + +V V+
Sbjct: 1011 KQVFLVSLKAGGFGLNLT-GADVVILYDLWWNPA-----VENQAMDRAHRIGQENSVQVF 1064

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI +NTI+E + +  + K  + D ++++
Sbjct: 1065 RLITRNTIEERIFELQQKKKDLFDSIVSS 1093


>gi|315648297|ref|ZP_07901398.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315276943|gb|EFU40286.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 1109

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K ++E    L   G         +   +  Q+      + E     E    K
Sbjct: 884  KLYTAYLAKLRQETLKHLAQDGFQKSRIRILAGITRLRQICCHPALFVEGY---EGSSAK 940

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
             + L   IE+       ++V   F   L                        +     + 
Sbjct: 941  FEQLLETIEECRLAGRRMLVFSQFTGMLKLIAGELGYRGIPSFYLDGQTPSAERVELCER 1000

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  +      + G GLNL  G + ++ + LWW+    Q         R  + G K+
Sbjct: 1001 FNEGEREVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QATDRAHRIGQKK 1054

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ+TI++ +    + K  + + L+ 
Sbjct: 1055 VVQVIRLVAQDTIEDKMYALQQKKKNLIEELVQ 1087


>gi|309791592|ref|ZP_07686086.1| non-specific serine/threonine protein kinase [Oscillochloris
            trichoides DG6]
 gi|308226372|gb|EFO80106.1| non-specific serine/threonine protein kinase [Oscillochloris
            trichoides DG6]
          Length = 1064

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y+K +           + +G +          ++  Q+ N     DE+        E 
Sbjct: 843  KLYNKTRDHYRSLLLGMIEQEGIDDARMKILEGLLRLRQICNHPRLMDEKFRGTSGKFE- 901

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNE 106
            +    +   +A     ++   F   L  ++          A+  G T  +        N+
Sbjct: 902  LLLETLETLQAEGHKALIFSQFVQMLTIIREALDARKIPYAYLDGSTRKRQEVVDTFQND 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +P       + G GLNL    + ++    WW+              R  + G  R VF
Sbjct: 962  PDLPFFLISLKAGGVGLNLTA-ADYVIHVDPWWNPAIEM-----QATDRTHRIGQTRPVF 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY LI + T++E +L     K  + + L+
Sbjct: 1016 VYKLITRETVEEKILLLQEQKRALVEQLI 1044


>gi|229153405|ref|ZP_04281583.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
 gi|228630009|gb|EEK86660.1| Helicase, SNF2/RAD54 [Bacillus cereus m1550]
          Length = 856

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +                +                 I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVPFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|20089087|ref|NP_615162.1| SNF2 family helicase [Methanosarcina acetivorans C2A]
 gi|19913949|gb|AAM03642.1| helicase (SNF2 family) [Methanosarcina acetivorans C2A]
          Length = 1078

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 35/225 (15%)

Query: 1    MKQYHKFQRE----LYCDLQG----------ENIEAFNSASKTVKCLQLANGAVYYDEEK 46
            MK Y    +E        L+                    S   +  Q+ N    + ++ 
Sbjct: 833  MKTYCTLTKEQASLYAAVLEDIEETMEEAEEGIQRKGIILSALTRLKQVCNHPAQFLKDN 892

Query: 47   HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRT 93
                    K+  L  +++    N    +V   F      L++               G  
Sbjct: 893  SAVPGRSGKLARLTEMLDVILENGEKALVFTQFAEMGKMLKEHLQASFGCEVLFLHGGVP 952

Query: 94   LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    ++ + EG   +P+      + G GLNL  G N +  F  WW+       +E  
Sbjct: 953  RKQRDRMLERFQEGKEYLPIFVLSLKAGGTGLNLT-GANHVFHFDRWWNPA-----VENQ 1006

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G  + V V+  I   T++E + + +  K  + + ++ 
Sbjct: 1007 ATDRAFRIGQTKNVEVHKFICAGTLEEKIDEIIERKVQVAENVVG 1051


>gi|89897890|ref|YP_515000.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331262|dbj|BAE80855.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1206

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 81/202 (40%), Gaps = 18/202 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEKA--NAAPII 72
            + + +   +  +      Q+ N    + +       H   K +A   ++  +  +   ++
Sbjct: 976  EEQTVNYLHVFALLNHLKQICNHPAIFFKNPDKYREHESGKWEAFVRLLHDSLASGCKVV 1035

Query: 73   VAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            V   +   +  +         + A  QG++L++         + +  +      + G G+
Sbjct: 1036 VFSQYIHMIRIIMLYLEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGTGI 1095

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL   GN+++ +  WW+  +     E   + R  + G K  VF+Y L+ ++T++E +   
Sbjct: 1096 NLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKNTVFIYKLMTEDTLEERIHYL 1149

Query: 184  LRTKSTIQDLLLNALKKETIHV 205
            +  K  + D +++      +H+
Sbjct: 1150 IEKKIRLLDKVISTQDSNILHM 1171


>gi|229189952|ref|ZP_04316960.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
 gi|228593444|gb|EEK51255.1| Helicase, SWF/SNF [Bacillus cereus ATCC 10876]
          Length = 1064

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|228907542|ref|ZP_04071399.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
 gi|228852034|gb|EEM96831.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 200]
          Length = 1064

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|77361962|ref|YP_341536.1| helicase domain-containing protein [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76876873|emb|CAI89090.1| putative protein with helicase domain [Pseudoalteromonas haloplanktis
            TAC125]
          Length = 1351

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 70/207 (33%), Gaps = 21/207 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y   +         E+ +     +   K  +         E      +   K+   E I
Sbjct: 1135 LYEATRLNALEQASQEDSQYITILASLTKLRRACIAPQLLIENSK---LPSSKLDTAEAI 1191

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            IE+   N    ++   F   L                     + +K    + ++  G+ P
Sbjct: 1192 IEELLENDHQALIFSQFVDVLKLVEQRLKKRGIAYCYLDGSMSSNKRKQQVDKFQAGEAP 1251

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL    + ++    WW+    Q         R  + G  R V VY L
Sbjct: 1252 LFLISLKAGGTGLNLTA-ADYVLHLDPWWNPAVEQ-----QASDRAHRLGQTRPVTVYRL 1305

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            IAQNTI+E +LQ    K  + D +L+ 
Sbjct: 1306 IAQNTIEEKILQLHEHKQALADKVLSG 1332


>gi|229147777|ref|ZP_04276120.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
 gi|228635790|gb|EEK92277.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-ST24]
          Length = 856

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|149924028|ref|ZP_01912411.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149815111|gb|EDM74664.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1158

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 2    KQYHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEV-HDE 54
            + Y + +      + G   +        +      +  Q           +    V    
Sbjct: 869  ELYERVRHTYRATVLGAVDDRGVRGATLHILEALTRLRQACCHPALLPFPEAQAMVARSA 928

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEW 104
            KI+ L +++ +A       +V   + S L         +         +       +  W
Sbjct: 929  KIELLVLLLREAIAGGHRSLVFSQWPSFLDHVSAALDEQTVAHLRLDGSTRDRGAVLDRW 988

Query: 105  NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    P+      + G GL+L    + +     WW+        E     R  + G  R
Sbjct: 989  QDPAGPPVFLISTKAGGVGLDLTA-ADHVFHLDPWWNPAA-----EDQATDRAHRIGQDR 1042

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V VY L+A +T+++ +L+    K  +    ++  + E   +
Sbjct: 1043 PVMVYKLVAADTVEDKILELQARKRKLFQATVDTDRLEVAEL 1084


>gi|315926199|ref|ZP_07922399.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620643|gb|EFV00624.1| snf2 family helicase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 478

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 17/211 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y+    + + +L+ + +   N  +K ++  QL  G +  DE    ++V   K+  LE
Sbjct: 268 LKLYYSLVEDSFAELEEDEVTTTNILTKLLRLSQLTGGFISGDESDVPEQVSTAKLSVLE 327

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKI 109
            II+        +++   F  +L  +           +   G   +++    Q  N+  +
Sbjct: 328 DIIDSAADEGRKLVIIARFVPELHAICSLLDKKGINHSLIMGGVKNREEQISQFQNDPDV 387

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L     ++ F+SL + +  ++Q   RI      +AG K      +
Sbjct: 388 TVFVGQIATAGLGITLTASSTMV-FYSLDYSMSTYEQTKARI-----HRAGQKYPCTYIH 441

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LIA  T+D+ VL+ LR+K+ +   L++  ++
Sbjct: 442 LIADGTVDQKVLRALRSKANLAKTLVDDYRR 472


>gi|206970802|ref|ZP_03231754.1| putative helicase [Bacillus cereus AH1134]
 gi|206734438|gb|EDZ51608.1| putative helicase [Bacillus cereus AH1134]
          Length = 1064

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|229050914|ref|ZP_04194465.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
 gi|228722459|gb|EEL73853.1| Helicase, SNF2/RAD54 [Bacillus cereus AH676]
          Length = 856

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229112656|ref|ZP_04242192.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
 gi|228670788|gb|EEL26096.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
          Length = 856

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQLVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|92118340|ref|YP_578069.1| SNF2-related [Nitrobacter hamburgensis X14]
 gi|91801234|gb|ABE63609.1| SNF2-related protein [Nitrobacter hamburgensis X14]
          Length = 902

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   EL   L+  +         +  ++  Q+ N    +  +  W E    K+  L 
Sbjct: 667 LYQQAVAELAGHLEEVDGIKRRGIVLAFLMRLKQICNHPSQWLGDGAWNEEDSGKLGRLR 726

Query: 61  VI--IEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I  +  A     +V   F                R          + K    ++++  +
Sbjct: 727 DIAEVVAARQEKALVFTQFKETTAPLLAFLGSVFGRPGLVLHGETEVKKRKDLVRQFQED 786

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +P       + G GLNL    + ++ F  WW+       +E     R  + G  + V 
Sbjct: 787 EDVPFFVLSVKAGGTGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAFRVGQTKNVL 840

Query: 167 VYYLIAQNTIDELVLQRLRTKSTI--------QDLLLNALKKETI 203
           V+  + + T++E +   + +K  +         D+LL  +K E +
Sbjct: 841 VHKFLCRGTVEEKIDHMIESKKQLAGDFLSGGADILLTEMKGEEL 885


>gi|312959636|ref|ZP_07774153.1| SNF2-like protein [Pseudomonas fluorescens WH6]
 gi|311286353|gb|EFQ64917.1| SNF2-like protein [Pseudomonas fluorescens WH6]
          Length = 896

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 82/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHW-KEVHDEK 55
            Y   +    +++  ++  + +           +K  Q+       ++     +     K
Sbjct: 664 VYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDATPPARGSSSGK 723

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           + +L  ++++  A    I++   F S L+ ++    +                  ++++ 
Sbjct: 724 LDSLLEMLDELFAEGRRILLFSQFTSMLSLIEAELKKRGIAYALLTGQTRDRRTPVKDFQ 783

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            GK+ +      + G GLNL    + ++ +  WW+        E     R  + G ++ V
Sbjct: 784 SGKLQIFLISLKAGGVGLNLTE-ADTVIHYDPWWNPAT-----ENQATDRAYRIGQEKPV 837

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY +IA+ T++E +    + KS +   +L+ 
Sbjct: 838 FVYKMIARGTVEEKIQHLQKEKSDLAAGVLDG 869


>gi|228900434|ref|ZP_04064661.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
 gi|228859174|gb|EEN03607.1| Helicase, SWF/SNF [Bacillus thuringiensis IBL 4222]
          Length = 1064

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGEL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|134288423|ref|YP_001110586.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134133073|gb|ABO59783.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 948

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 24/216 (11%)

Query: 3   QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            Y   +       RE   D +G         S+ +K  Q+         E+  ++    K
Sbjct: 709 LYETVRASAQFVVREAVAD-RGLGRSTITVLSQILKLRQVCCDPRLLRLEQSEQKKPSAK 767

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWN 105
           ++ L  ++ +   +   ++V   F + +  +       +   +             + + 
Sbjct: 768 LEYLMNMLRELLGDGRRVVVFSAFLTMVDIIADRLRDDQVEFEVITGETQNTDRAKERFQ 827

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             ++PLL       G G NL    + ++ +  WW+        E   + R  + G  +A+
Sbjct: 828 NQEVPLLLCTLKVGGVGHNLTA-ADTVILYDPWWNPAA-----ENQAMDRAHRIGQTKAL 881

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           FVY LI   +I+E ++     K  +   +L+    E
Sbjct: 882 FVYKLIMAGSIEERIVAMQERKDALMKAILDDDFGE 917


>gi|237747228|ref|ZP_04577708.1| helicase [Oxalobacter formigenes HOxBLS]
 gi|229378579|gb|EEO28670.1| helicase [Oxalobacter formigenes HOxBLS]
          Length = 1126

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 25/222 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDEEKHWKEVH-D 53
            + Y    REL      + I  +             +K  Q+           + K ++  
Sbjct: 892  QIYES-VRELMDKKVQDEIAKYGIAHCQIIILEALLKLRQVCCDPRLLRGSAYKKTLNAS 950

Query: 54   EKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQE 103
             K+  L  ++E+        +V   F S L+ ++K     R                I+ 
Sbjct: 951  AKLSELMEMLEELLLEKRHILVFSQFTSMLSLIEKELNSRRIPYALLTGDTADRASAIRH 1010

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + +GK+P+      + G GLNL    + ++ +  WW+       +E     R  + G  +
Sbjct: 1011 FQDGKVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAWRIGQDK 1064

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VFVY LIA+ T++E + +  + K+ + + +L++ + + + +
Sbjct: 1065 PVFVYKLIAKGTLEEQIQELQQRKADLANAMLSSGQAQHVQI 1106


>gi|257867846|ref|ZP_05647499.1| Snf2 family protein [Enterococcus casseliflavus EC30]
 gi|257874174|ref|ZP_05653827.1| Snf2 family protein [Enterococcus casseliflavus EC10]
 gi|257801929|gb|EEV30832.1| Snf2 family protein [Enterococcus casseliflavus EC30]
 gi|257808338|gb|EEV37160.1| Snf2 family protein [Enterococcus casseliflavus EC10]
          Length = 1054

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  + R++  ++   +  +      +  +   +  Q+      + E+    E    K+
Sbjct: 828  KIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVEDY---EGSSGKL 884

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            + ++ ++   K N   +++   F S L+ ++                         +  +
Sbjct: 885  EQVKDLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVDAF 944

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K  
Sbjct: 945  NSGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRIGQKNV 998

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ +IA+ TI+E +    + K  +   ++   + +   +
Sbjct: 999  VEVWRMIAEGTIEERMDALQQEKRELFQKVIQGNETQLQQM 1039


>gi|228952232|ref|ZP_04114322.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
 gi|228807447|gb|EEM53976.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar kurstaki str.
            T03a001]
          Length = 1064

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|229079035|ref|ZP_04211586.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
 gi|228704209|gb|EEL56644.1| Helicase, SWF/SNF [Bacillus cereus Rock4-2]
          Length = 1064

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNHQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|229193493|ref|ZP_04320440.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
 gi|228590025|gb|EEK47897.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
          Length = 856

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|296502447|ref|YP_003664147.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
 gi|296323499|gb|ADH06427.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
          Length = 1064

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            A  TI+E + +   +K  +   ++   +++   +
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEKLASI 1053


>gi|228968365|ref|ZP_04129360.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791331|gb|EEM38938.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 856

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|81299683|ref|YP_399891.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
 gi|81168564|gb|ABB56904.1| DEAD/DEAH box helicase-like [Synechococcus elongatus PCC 7942]
          Length = 1019

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 26/216 (12%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKH---WKEVHDEKIKA 58
           Y     E   +++            +   +  QL N      E+            K++ 
Sbjct: 782 YQVLVNEALANIEASEGIQRRGQILALLTRLKQLCNHPSLLLEKPKLDPNFGDRSAKLQR 841

Query: 59  LEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  ++ +        +V   F              L R                 +  + 
Sbjct: 842 LLEMLAELTDAGDRALVFTQFAGWGSLLQQFLQEQLGREVLFLSGSTKKGDRQQMVDRFQ 901

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL    N +  +  WW+       +E     R  + G +R
Sbjct: 902 NDPQAPAIFILSLKAGGVGLNLTK-ANHVFHYDRWWNPA-----VENQATDRAFRIGQRR 955

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  +   T++E + Q + +K  +   ++ + +
Sbjct: 956 NVQVHKFVCAGTLEEKIDQMIASKQALAQQIVGSGE 991


>gi|56750675|ref|YP_171376.1| putative SNF2 helicase [Synechococcus elongatus PCC 6301]
 gi|56685634|dbj|BAD78856.1| putative SNF2 helicase [Synechococcus elongatus PCC 6301]
          Length = 1019

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 26/216 (12%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKH---WKEVHDEKIKA 58
           Y     E   +++            +   +  QL N      E+            K++ 
Sbjct: 782 YQVLVNEALANIEASEGIQRRGQILALLTRLKQLCNHPSLLLEKPKLDPNFGDRSAKLQR 841

Query: 59  LEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  ++ +        +V   F              L R                 +  + 
Sbjct: 842 LLEMLAELTDAGDRALVFTQFAGWGSLLQQFLQEQLGREVLFLSGSTKKGDRQQMVDRFQ 901

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL    N +  +  WW+       +E     R  + G +R
Sbjct: 902 NDPQAPAIFILSLKAGGVGLNLTK-ANHVFHYDRWWNPA-----VENQATDRAFRIGQRR 955

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  +   T++E + Q + +K  +   ++ + +
Sbjct: 956 NVQVHKFVCAGTLEEKIDQMIASKQALAQQIVGSGE 991


>gi|228923978|ref|ZP_04087255.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835777|gb|EEM81141.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 856

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229072708|ref|ZP_04205910.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
 gi|229181505|ref|ZP_04308833.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228602080|gb|EEK59573.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
 gi|228710684|gb|EEL62657.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
          Length = 856

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228911082|ref|ZP_04074889.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
 gi|228848586|gb|EEM93433.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 200]
          Length = 856

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|291009114|ref|ZP_06567087.1| Snf2/Rad54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 994

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   +             +   K  Q+ N    +  +         K+  LE
Sbjct: 764 LYQAVVDDMLRRIDESDGMERRGLVLATMSKLKQVCNHPAQFLGDGSPLAGRSGKLARLE 823

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            I+E+   +    +    F      L                 G    +    ++ +   
Sbjct: 824 EILEEVLADGDKALCFTQFAGFGGMLVPHLSARFDTEVLYLHGGTPKKQRDAMVERFQSA 883

Query: 108 KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             P +      + G GL L  G N ++    WW+       +E     R  + G +R V 
Sbjct: 884 DGPAVFMLSLKAGGTGLTLT-GANHVIHLDRWWNPA-----VEDQATDRAFRIGQRRDVQ 937

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V  L    T++E + + L  K  +  L++ A +
Sbjct: 938 VRKLTCIGTLEEKIDRMLEDKKALAQLVVGAGE 970


>gi|134098193|ref|YP_001103854.1| Snf2/Rad54 family helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910816|emb|CAM00929.1| probable helicase, Snf2/Rad54 family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 988

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   +             +   K  Q+ N    +  +         K+  LE
Sbjct: 758 LYQAVVDDMLRRIDESDGMERRGLVLATMSKLKQVCNHPAQFLGDGSPLAGRSGKLARLE 817

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            I+E+   +    +    F      L                 G    +    ++ +   
Sbjct: 818 EILEEVLADGDKALCFTQFAGFGGMLVPHLSARFDTEVLYLHGGTPKKQRDAMVERFQSA 877

Query: 108 KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             P +      + G GL L  G N ++    WW+       +E     R  + G +R V 
Sbjct: 878 DGPAVFMLSLKAGGTGLTLT-GANHVIHLDRWWNPA-----VEDQATDRAFRIGQRRDVQ 931

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V  L    T++E + + L  K  +  L++ A +
Sbjct: 932 VRKLTCIGTLEEKIDRMLEDKKALAQLVVGAGE 964


>gi|220930817|ref|YP_002507726.1| SNF2-related protein [Clostridium cellulolyticum H10]
 gi|220001145|gb|ACL77746.1| SNF2-related protein [Clostridium cellulolyticum H10]
          Length = 1077

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 27/216 (12%)

Query: 2    KQY----HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + ++  ++             S   +  QL      + +     E    K
Sbjct: 854  KLYVAYLEKAKGDILKEINENGYERSQIKILSVLTRLRQLCCHPSLFVDNY---EGDSGK 910

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            +  L+ I+     +   I++   F S LA +++   +              D+    +  
Sbjct: 911  LLLLKEIVGDSLTSGHRILLFSQFTSMLAIIRQWLQEDGIDYLYLDGSTPADERMKMVTN 970

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      S G GLNL  G + ++ +  WW+       +E     R  + G  +
Sbjct: 971  FNNGQGQIFLLSLKSGGTGLNLT-GADTVIHYDPWWNPA-----VEDQATDRAYRIGQLK 1024

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V  L+   TI+E +L     K  + D ++ + +
Sbjct: 1025 TVHVMKLVTHGTIEEKILHLKDRKKQLVDAVIQSGE 1060


>gi|218896786|ref|YP_002445197.1| putative helicase [Bacillus cereus G9842]
 gi|218540700|gb|ACK93094.1| putative helicase [Bacillus cereus G9842]
          Length = 1064

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGEL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|29828520|ref|NP_823154.1| SNF2/RAD54 family helicase [Streptomyces avermitilis MA-4680]
 gi|29605624|dbj|BAC69689.1| putative SNF2/RAD54 family helicase [Streptomyces avermitilis
           MA-4680]
          Length = 962

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 24/221 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEE----KHWKEVHDEKI 56
            Y    RE    ++                   Q+ +    Y +E             K+
Sbjct: 733 LYEAVVRESMLAIETAEGIGRRGLVLKLLTSLKQICDHPALYLKEDAGGTAGLAARSGKL 792

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
             L+ +++         +V   +      +                G  + +    +  +
Sbjct: 793 ALLDELLDTLLSEDGSALVFTQYVGMARLITAHLASRAVPVELLHGGTPVPERERMVDRF 852

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G  P+L     + G GLNL   G+ +V F  WW+       +E     R  + G  + 
Sbjct: 853 QSGTTPVLVLSLKAAGTGLNLTRAGH-VVHFDRWWNPA-----VEEQATDRAYRIGQTQP 906

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V+ LI + T+++ + + L  K  + D +L + +     +
Sbjct: 907 VQVHRLITEGTVEDRIAEMLEAKRALADAILGSGESSLTEL 947


>gi|256003807|ref|ZP_05428794.1| SNF2-related protein [Clostridium thermocellum DSM 2360]
 gi|255992145|gb|EEU02240.1| SNF2-related protein [Clostridium thermocellum DSM 2360]
 gi|316939145|gb|ADU73179.1| SNF2 helicase associated domain protein [Clostridium thermocellum DSM
            1313]
          Length = 1087

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + ++   ++       G         S   +  Q+      + E    +     K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIENYSGE---SGK 920

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            I+ALE I+     +   I++   F S L  +++   Q                    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+       +E     R  + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPA-----VEDQASDRAHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|257876739|ref|ZP_05656392.1| Snf2 family protein [Enterococcus casseliflavus EC20]
 gi|257810905|gb|EEV39725.1| Snf2 family protein [Enterococcus casseliflavus EC20]
          Length = 1054

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  + R++  ++   +  +      +  +   +  Q+      + E+    E    K+
Sbjct: 828  KIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVEDY---EGSSGKL 884

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            + ++ ++   K N   +++   F S L+ ++                         +  +
Sbjct: 885  EQVKDLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVDAF 944

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K  
Sbjct: 945  NSGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRIGQKNV 998

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ +IA+ TI+E +    + K  +   ++   + +   +
Sbjct: 999  VEVWRMIAEGTIEERMDALQQEKRELFQKVIQGNETQLQQM 1039


>gi|149918387|ref|ZP_01906877.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
 gi|149820687|gb|EDM80097.1| swf/snf family helicase [Plesiocystis pacifica SIR-1]
          Length = 1385

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 20/204 (9%)

Query: 4    YHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y   +R     L+G     +     ++  +  Q A      DE        D   + L  
Sbjct: 1170 YEALRRRALESLEGGEQHTQRVRILAELTRLRQAAVDPRLLDERGPAGAKIDALTRQLLS 1229

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPL 111
            +  +      +V   F   +A +++AF                 +    +  +  G+  +
Sbjct: 1230 L--REEGHRALVFTQFLGAMALMRQAFEAAGIEYLELDGATPAAERARRVDAFQAGEGDV 1287

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G G+NL  G + ++    WW+       +E     R  + G  R V VY L+
Sbjct: 1288 FMLSLRAGGVGMNLT-GADYVLHLDPWWNPA-----VEDQATDRAHRLGQSRPVTVYRLV 1341

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
            ++ TI+E +L     K  + D LL
Sbjct: 1342 SKGTIEEKILALHAEKRELTDDLL 1365


>gi|311896870|dbj|BAJ29278.1| putative truncated ATP-dependent helicase [Kitasatospora setae
           KM-6054]
          Length = 441

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 22/209 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     +L   L G           +   +  Q+ N       ++        K++ L 
Sbjct: 211 LYQAVVADLLDRLGGVRGVERKGAVLAALGRLKQVCNHPAQLLRDRSPLGGRSGKVERLV 270

Query: 61  VIIEKA--NAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
            ++ +A      ++V   +              L         G +  +    +  +   
Sbjct: 271 ALLREALAEGDRVLVFTQYAEFGALLQPHLRRRLDTPVLYLHGGLSAPRRQELVDSFQSP 330

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GLNL    N +V    WW+        E     R  + G  R V 
Sbjct: 331 DGPRVFLLSLKAGGTGLNLTA-ANQVVHLDRWWNPAT-----EDQATDRAHRIGQHRDVQ 384

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V  L+   TI+E + + + TK  + D ++
Sbjct: 385 VRKLVCTGTIEERIAELIDTKRELADSVV 413


>gi|229082458|ref|ZP_04214921.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
 gi|228700890|gb|EEL53413.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock4-2]
          Length = 856

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|149196784|ref|ZP_01873837.1| SNF2-related protein [Lentisphaera araneosa HTCC2155]
 gi|149139894|gb|EDM28294.1| SNF2-related protein [Lentisphaera araneosa HTCC2155]
          Length = 880

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKA 66
           RE   D +G   +     S  +K  Q+ N    +     +K     K + L  I    K 
Sbjct: 659 REAIADSEGIQRKGL-VLSSLMKFKQICNHPDQFLGGGPYKTTESGKFQRLMEICETIKE 717

Query: 67  NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
               ++V   F                          ++ K    +  +  +  +P    
Sbjct: 718 KREKVLVFTQFKEITEELAKFMESYFGHSGLVLHGSISVKKRKEMVARFQSDEYVPFFIL 777

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    N +V F  WW+       +E     R  + G K+ V V+  + + 
Sbjct: 778 SIKAGGTGLNLTA-ANHVVHFDRWWNPA-----VENQATDRAFRIGQKKNVMVHKFVCKG 831

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           TI+E +   L  K  I D +L++
Sbjct: 832 TIEEKISTMLEDKQKISDEVLSS 854


>gi|171913352|ref|ZP_02928822.1| Non-specific serine/threonine protein kinase [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1140

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 2    KQY-HKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +  +  +  L     E  N           +  Q+             +E    K
Sbjct: 910  KLYREQLAQAQHMILTSTGAEMLNKRRFAILQAITRLRQICCHPALVQPGADDEE--SAK 967

Query: 56   IKALEVIIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEW 104
            + AL  ++++ +     ++V   F + L  ++           +  G + ++        
Sbjct: 968  LNALMELLDQLHDEGHKVLVFSQFVAMLKIIRDKLTGLNRPFHWLTGASQNRADIVKSFQ 1027

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G GLNL    + ++ +  WW+       +E   + R  + G  + 
Sbjct: 1028 ETPDPSVFLLSLKAGGSGLNLTA-ASYVILYDPWWNPA-----VENQAIDRAHRIGQTQP 1081

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y L+A+N+I+E +    + KS +   +L  
Sbjct: 1082 VMAYRLLAKNSIEEKIRHLQQQKSLLSSDVLGE 1114


>gi|228961502|ref|ZP_04123113.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798216|gb|EEM45218.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 856

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|228975316|ref|ZP_04135873.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228981952|ref|ZP_04142247.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228778064|gb|EEM26336.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis Bt407]
 gi|228784449|gb|EEM32471.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 855

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 632 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKI 691

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 692 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 751

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 752 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 805

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 806 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 837


>gi|281418599|ref|ZP_06249618.1| SNF2-related protein [Clostridium thermocellum JW20]
 gi|281407683|gb|EFB37942.1| SNF2-related protein [Clostridium thermocellum JW20]
          Length = 1087

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + ++   ++       G         S   +  Q+      + E    +     K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIENYSGE---SGK 920

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            I+ALE I+     +   I++   F S L  +++   Q                    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+       +E     R  + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPA-----VEDQASDRAHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|149919778|ref|ZP_01908255.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149819385|gb|EDM78816.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1047

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 1    MKQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +  Y++  +    ++       G         +   +  Q+       +  +        
Sbjct: 810  LALYNRILKAAKSEITTRVGEVGIEKSQMTILAALTRLRQVCTDPKLLNLPEGTTVPKST 869

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQE 103
            K++A   +I +A  +    +V   F S             +   +  G T ++D    + 
Sbjct: 870  KLEAFRALIGEAVGSGRKALVFSQFVSMQKILAGTLEELEIDYLWLHGGTTNRDELVQRF 929

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +   P+      + G GL L    + ++ +  WW+       +E     R  + G ++
Sbjct: 930  QQKSGPPVFLISLKAGGAGLTLTE-ADTVIHYDPWWNPA-----VEDQATDRAHRIGQEK 983

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V VY L+ ++T+++ +++    K  I +  L 
Sbjct: 984  PVMVYRLVVEHTVEQKMVELGAEKRKIAESALG 1016


>gi|125974936|ref|YP_001038846.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125715161|gb|ABN53653.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 1087

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + ++   ++       G         S   +  Q+      + E    +     K
Sbjct: 864  KIYLAYLKKAKAEVAMELQTNGFEKSQIKILSLLTRLRQICCHPSLFIENYSGE---SGK 920

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            I+ALE I+     +   I++   F S L  +++   Q                    ++ 
Sbjct: 921  IQALEEIMTDAFDSGHRILLFSQFTSMLEIIKQFLDQKSVEYFYLDGSTKAQDRVEMVKA 980

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   L      + G GLNL  G ++++ F  WW+       +E     R  + G K 
Sbjct: 981  FNQGTGKLFLISLKAGGTGLNLT-GADMVIHFDPWWNPA-----VEDQASDRAHRIGQKN 1034

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI++ + +  + K  + D ++ 
Sbjct: 1035 VVQVMKLITQGTIEDKIFELQQKKKEMIDSVIQ 1067


>gi|300854652|ref|YP_003779636.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434767|gb|ADK14534.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1088

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + + EL  +++ + I        S   +  Q+      + E     E  + K++AL  I+
Sbjct: 871  QAKEELNNEIRDKGINKSKIKILSIITRLRQICCDPSTFIENY---ESDNGKMEALMGIV 927

Query: 64   EK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            +    +   I++   F S L                       +K    ++E+NEG+IP+
Sbjct: 928  QNSVNDGHKILLFSQFTSVLKNIGDMFKNENIKYMYLDGSVKAEKRGEMVREFNEGQIPI 987

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    +I++ +  WW+       +E     R  + G K+ V V  LI
Sbjct: 988  FLISLKAGGTGLNLTS-ADIVIHYDPWWNPA-----VENQASDRAHRIGQKKTVEVIRLI 1041

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            A+ TI+E + +    K  I + ++     E I
Sbjct: 1042 AKGTIEEKIHKIQDKKKEIINNVIEENTGEEI 1073


>gi|295695581|ref|YP_003588819.1| SNF2-related protein [Bacillus tusciae DSM 2912]
 gi|295411183|gb|ADG05675.1| SNF2-related protein [Bacillus tusciae DSM 2912]
          Length = 1189

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 17/204 (8%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + + +      G         +   +  Q+         E        E +  L     +
Sbjct: 966  QLRAQQLMQKGGLTENRIAILALITRLRQVCADPALVVPEYDGSSAKLEALLELLRD-YR 1024

Query: 66   ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                  +V   F   L R++                            +N G+  +    
Sbjct: 1025 VAGRRALVFSQFTQMLERIRGRLAQEGIEAFYLDGRTPPKDRLAMADAFNAGERGVFLIS 1084

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL  G + ++ + LWW+       ++   + R  + G K  V V  +IA+ T
Sbjct: 1085 LRAGGTGLNLT-GADTVILYDLWWNPA-----VDAQAIGRAHRIGQKNPVLVLRVIAKGT 1138

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E +      K  + D ++ + K
Sbjct: 1139 IEERMYALQMKKQALFDRVIESEK 1162


>gi|30023277|ref|NP_834908.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|29898838|gb|AAP12109.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
          Length = 918

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LIELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 900


>gi|228955491|ref|ZP_04117496.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804283|gb|EEM50897.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 856

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|291298955|ref|YP_003510233.1| SNF2-like protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568175|gb|ADD41140.1| SNF2-related protein [Stackebrandtia nassauensis DSM 44728]
          Length = 621

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y         D  G   E          +  Q+ N    +  ++H       K+    
Sbjct: 389 KLYSAAVERAMNDGLGSGFERHGRVLKLLTELKQICNHPAQFLRQEHPLTGRSGKLARAT 448

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKDPCTIQEWN- 105
            ++ +A    A  +V   +      L                  G +       + E+  
Sbjct: 449 EMLAEAVAEGAQSLVFTQYRVMGELLATHLAAELGLEKVPFLHGGVSQPGRDAMVAEFQS 508

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P+L     + G GLNL      ++ +  WW+       +E     R  + G  + 
Sbjct: 509 GDDPPPILIVSLKAGGTGLNLTA-ATHVLHYDRWWNPA-----VEDQATDRAHRIGQTKP 562

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V VY L+   T++E +   L  K ++ + ++ 
Sbjct: 563 VTVYKLVTGGTLEERISDLLERKRSLAESIVG 594


>gi|171912733|ref|ZP_02928203.1| hypothetical protein VspiD_16175 [Verrucomicrobium spinosum DSM
           4136]
          Length = 803

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 78/213 (36%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y +   E   +++      G+        +  ++  Q+ N         H+K     K
Sbjct: 577 EVYQRLLEEGREEIRSARKRTGQGSARMTMFTVLLRLRQVCNDLRLLKLGDHFKGQPGGK 636

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEW 104
              LE ++++        ++   F   L  ++          ++  G T D+        
Sbjct: 637 WPMLEELLQEIIDGGGKALIFSQFVGMLRLVRDKVQSLEIAHSYLDGGTQDRGGQVSAFQ 696

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           ++ +  L      + G+GLNL    + ++    WW+       +E   + R  + G  R 
Sbjct: 697 SDPERKLFLISLKAGGYGLNLTA-ADHVLLVDPWWNPA-----VEAQAIDRAHRIGQGRP 750

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V  Y L  + T++E +L+    K +I D+ L  
Sbjct: 751 VTAYRLATRGTVEEKILKLQEKKRSIMDMTLED 783


>gi|296276324|ref|ZP_06858831.1| SNF2 family protein [Staphylococcus aureus subsp. aureus MR1]
          Length = 455

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 8/200 (4%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 254 KVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKK 200
            + L+ K   Q+ L+ A+K 
Sbjct: 427 YKALQNKELTQEELMKAIKA 446


>gi|258404421|ref|YP_003197163.1| SNF2-like protein [Desulfohalobium retbaense DSM 5692]
 gi|257796648|gb|ACV67585.1| SNF2-related protein [Desulfohalobium retbaense DSM 5692]
          Length = 1062

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 28/218 (12%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +      +      +G      +     ++  Q+A           ++     K
Sbjct: 839  KLYSEIRDHYRAQVLSRVEEKGLAQSKMHVLEGLLRLRQVACHPKLVGGNGQYE---SGK 895

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
            ++ L   I     +    +V   F   L  +            +        +    +  
Sbjct: 896  LQELRERITAVVGSGHKALVFSQFTRFLRLIKDMLESEGIAYCSLDGRTPAKRRQERVAR 955

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +    P+      + G GLNL    + +     WW+     Q ++R       + G  
Sbjct: 956  FQDVDGPPVFTISLKAGGTGLNLTA-ADYVFIADPWWNPAVEMQAVDR-----THRIGQD 1009

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + VF Y  + + T++E +      K  +   +L+  K 
Sbjct: 1010 KTVFTYRFVTEGTVEEKIRTLQNQKQELVQSVLSGSKG 1047


>gi|70726780|ref|YP_253694.1| hypothetical protein SH1779 [Staphylococcus haemolyticus JCSC1435]
 gi|68447504|dbj|BAE05088.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 452

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    + +    I A + AS + K LQL+NGAV Y +++  + +HD K+  LE
Sbjct: 254 KLYDELEKYYILEDETDGTIVAQSGASLSQKILQLSNGAV-YTDDEDVRHIHDRKLDKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            II++A   PI++ Y+F  D  R+ + F    T   D     +WN GK  +L AHPAS G
Sbjct: 313 EIIDEAQGQPILLFYNFKHDRDRILERFDDVLT-LDDKGYKDKWNSGKAKILLAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQTHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            Q L+ K   QD L+ A+K   
Sbjct: 427 YQALQNKELTQDELMKAIKARI 448


>gi|228938966|ref|ZP_04101566.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|228971848|ref|ZP_04132469.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228978456|ref|ZP_04138833.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228781473|gb|EEM29674.1| Helicase, SWF/SNF [Bacillus thuringiensis Bt407]
 gi|228787938|gb|EEM35896.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228820815|gb|EEM66840.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar berliner ATCC
            10792]
 gi|326939468|gb|AEA15364.1| SWF/SNF family helicase [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1064

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229043607|ref|ZP_04191314.1| Helicase, SWF/SNF [Bacillus cereus AH676]
 gi|228725682|gb|EEL76932.1| Helicase, SWF/SNF [Bacillus cereus AH676]
          Length = 1064

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|288802766|ref|ZP_06408204.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
 gi|288334916|gb|EFC73353.1| SNF2/helicase domain protein [Prevotella melaninogenica D18]
          Length = 1343

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    +     +  ++ ++     Q+A      D      ++   K+ A  
Sbjct: 1124 MAMYEVKRRETEAKILENKADKVSTLAEITHLRQMACSCSLVD---KRWKLPSSKVLAFI 1180

Query: 61   VIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S                        +      ++E+  GK
Sbjct: 1181 DLAESLNDSGNRALVFSQFTSFFEEIKKAMETAKLPYLYLDGSTPMSMREKLVKEFQSGK 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    Q         R  + G K+ V VY
Sbjct: 1241 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQ-----QATDRAYRIGQKQDVTVY 1294

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1295 RLISQHTIEEKILRLHKTKRNLSDSLLEG 1323


>gi|238063663|ref|ZP_04608372.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
 gi|237885474|gb|EEP74302.1| SNF2/RAD54 family helicase [Micromonospora sp. ATCC 39149]
          Length = 929

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 22/209 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKA 58
            Y +   ++  +++                V   Q+ N   +Y  E         EK+  
Sbjct: 702 LYQRVVDDVLAEIRASTTSMARRGLVLKLLVGLKQVCNHPAHYLKEPHGRLTGRSEKLHL 761

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE 106
           L+ ++E         +V   +      L++              G  + +    ++ +  
Sbjct: 762 LDDLLETILAEEGGALVFTQYVQMARLLKRHLAERGVPAQLLHGGTPVPQREEMVRRFQA 821

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G++P+      + G GLNL    + ++ F  WW+       +E     R  + G  + V 
Sbjct: 822 GEVPVFLLSLKAAGTGLNLTR-ADHVIHFDRWWNPA-----VEEQATDRAYRIGQTKPVQ 875

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ LIAQ T+++ +   L +K  + D +L
Sbjct: 876 VHRLIAQGTLEDRIAALLESKRELADAVL 904


>gi|221124460|ref|XP_002165434.1| PREDICTED: similar to TATA-binding protein-associated factor 172
           [Hydra magnipapillata]
          Length = 562

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 18/186 (9%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
            +     +K  Q+              ++   K+ AL  ++         ++V   F   
Sbjct: 335 ISILDALLKLRQVCCDPYLVKGSDIAPDMERAKLHALTDLLVPLVDEGRRVLVFSQFTEL 394

Query: 81  LARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           L  +            +        +    +Q +   ++P+L     + G GLNL    +
Sbjct: 395 LELIADALSALRLPFLSLTGNTCPAQRGDIVQRFQNQEVPVLLVSLKTGGVGLNLTA-AD 453

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++    WW+       +E     R  + G  + VFVY L+ + +I+E +L+    K  +
Sbjct: 454 TVIHMDPWWNPA-----VEEQATARAHRIGQDQPVFVYKLVVEGSIEERMLELQARKLAL 508

Query: 191 QDLLLN 196
            D +L 
Sbjct: 509 SDSVLG 514


>gi|229011148|ref|ZP_04168341.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
 gi|228750031|gb|EEL99863.1| Helicase, SWF/SNF [Bacillus mycoides DSM 2048]
          Length = 1064

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            A  TI+E + +   +K  +   ++   +++ 
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEIIEPGEEKL 1050


>gi|218780869|ref|YP_002432187.1| serine/threonine protein kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762253|gb|ACL04719.1| Non-specific serine/threonine protein kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 896

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K  +EL   ++            S  ++  Q+ N    Y  +  +      K   L+
Sbjct: 665 LYAKSVQELAKSIETAEGIERRGIVLSFLMRFKQICNHPSQYIGDGEYSPNKSGKFLRLK 724

Query: 61  VIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E+  +     ++   F                R       G  + K    +  +  +
Sbjct: 725 EICEEIASRQEKALIFTQFREMTDPLAAYLGEIFGREGLILHGGTPVKKRKNLVDVFQRD 784

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + ++ F  WW+       +E     R  + G  + V 
Sbjct: 785 DGPPFFVLSLKAGGTGLNLTN-ASHVIHFDRWWNPA-----VENQATDRAFRIGQHKNVL 838

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  + + T++E +   +  K  + + +L A
Sbjct: 839 VHKFVCRGTLEEKIDALIEEKIGLAEGVLKA 869


>gi|311742706|ref|ZP_07716515.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
 gi|311314334|gb|EFQ84242.1| SNF2/RAD54 family helicase [Aeromicrobium marinum DSM 15272]
          Length = 867

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
            Y    R     ++  +             +  Q+ N    +  E +        K+  L
Sbjct: 643 LYEATVRATMAQIESASGIHRRGLIIKLLTQLKQICNHPGQFLRETEGRLTGRSGKLLLL 702

Query: 60  E----VIIEKANAAPIIVAY--------HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           +     I+ +  AA +   Y           +D          G  + +    +Q+++ G
Sbjct: 703 DDLLPEIVAEDGAALVFTQYARMGHLLSRHLADRGIDHFYLHGGTPIPRRERMVQQFSAG 762

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GLNL    + ++ +  WW+       +E     R  + G  ++V V
Sbjct: 763 EAPVFVLSLKAAGTGLNLTR-ADHVIHYDRWWNPA-----VEDQATDRAHRIGQTKSVQV 816

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + L+++ TI+E + + + +K  + D ++NA +
Sbjct: 817 HRLMSEGTIEESIAELIASKRALADAVVNAGE 848


>gi|229132678|ref|ZP_04261525.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
 gi|228650805|gb|EEL06793.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST196]
          Length = 1068

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            A  TI+E + +   +K  +   ++   +++ 
Sbjct: 1024 AHGTIEEKMHELQESKKNLIAEIIEPGEEKL 1054


>gi|229166704|ref|ZP_04294454.1| Helicase, SWF/SNF [Bacillus cereus AH621]
 gi|228616701|gb|EEK73776.1| Helicase, SWF/SNF [Bacillus cereus AH621]
          Length = 1064

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            A  TI+E + +   +K  +   ++   +++ 
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEIIEPGEEKL 1050


>gi|163939654|ref|YP_001644538.1| non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
 gi|163861851|gb|ABY42910.1| Non-specific serine/threonine protein kinase [Bacillus
            weihenstephanensis KBAB4]
          Length = 1068

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            A  TI+E + +   +K  +   ++   +++ 
Sbjct: 1024 AHGTIEEKMHELQESKKNLIAEIIEPGEEKL 1054


>gi|229059502|ref|ZP_04196884.1| Helicase, SWF/SNF [Bacillus cereus AH603]
 gi|228719785|gb|EEL71379.1| Helicase, SWF/SNF [Bacillus cereus AH603]
          Length = 1068

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K   L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRVLAGLTRLRQICCHPALFVDDYK---GSSAKFDQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            A  TI+E + +   +K  +   ++   +++ 
Sbjct: 1024 AHGTIEEKMHELQESKKNLIAEIIEPGEEKL 1054


>gi|326381641|ref|ZP_08203335.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199888|gb|EGD57068.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 1154

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y  +    +++L   L+  +           +  QL+   V  D       V+  KI+
Sbjct: 933  KVYDTYLARDRQQLLGLLENFDGNRIQVLRALTRLRQLSLHPVLVD--GEHANVNSAKIE 990

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
             L   +          +V   F   L                      + K    I+++ 
Sbjct: 991  YLSEQLPMLIDEGHSALVFSSFTGFLKLIAGRLDAEDIPYSYLDGSTAITKRAKQIEQFT 1050

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+  +      + G GLNL    +       WW+        E   V R  + G  RAV
Sbjct: 1051 DGRTRVFLISLKAGGFGLNLTA-ADYCFMTDPWWNPAA-----EAQAVDRAHRIGQHRAV 1104

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY +++  TI+E V+     K  + D LL+ 
Sbjct: 1105 TVYRMVSTGTIEEKVIDLQTRKRELFDALLDE 1136


>gi|312139122|ref|YP_004006458.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311888461|emb|CBH47773.1| putative ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 945

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   ++            S   +  Q+ N   ++  +             K+
Sbjct: 711 LYRAVVDDMLKKIKDTEGMQRKGAVLSALTRLKQVCNHPAHFLGDGSGVLRRGRHRSGKL 770

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
             +E I++    +    ++   F      +                 G    +    ++ 
Sbjct: 771 ALVEDILDSVTADGERALLFTQFREFGDLVVPYLEERFGTDVPFLHGGVPKARRDRMVER 830

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +   P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 831 FQGDDGPPVMLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQR 884

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V V  L+   T++E +   +  K  + DL +   +K
Sbjct: 885 RDVQVRKLVCVGTLEERIDAMISNKQELADLAIGTGEK 922


>gi|325673577|ref|ZP_08153268.1| SNF2 family superfamily II DNA/RNA helicase [Rhodococcus equi ATCC
           33707]
 gi|325555598|gb|EGD25269.1| SNF2 family superfamily II DNA/RNA helicase [Rhodococcus equi ATCC
           33707]
          Length = 945

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   ++            S   +  Q+ N   ++  +             K+
Sbjct: 711 LYRAVVDDMLKKIKDTEGMQRKGAVLSALTRLKQVCNHPAHFLGDGSGVLRRGRHRSGKL 770

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
             +E I++    +    ++   F      +                 G    +    ++ 
Sbjct: 771 ALVEDILDSVTADGERALLFTQFREFGDLVVPYLEERFGTDVPFLHGGVPKARRDRMVER 830

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +   P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 831 FQGDDGPPVMLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQR 884

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V V  L+   T++E +   +  K  + DL +   +K
Sbjct: 885 RDVQVRKLVCVGTLEERIDAMISNKQELADLAIGTGEK 922


>gi|330808509|ref|YP_004352971.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
 gi|327376617|gb|AEA67967.1| Putative non-specific serine/threonine protein [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1096

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 77/206 (37%), Gaps = 20/206 (9%)

Query: 6    KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDE--KIKALEV 61
               R++  ++    +           +K  Q+       +  +  K +     K+ +L  
Sbjct: 874  AMDRKVRDEIARSGVARSQIIILDALLKLRQVCCDLRLLNTVQTAKALRSGSGKLISLME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            ++E+  +    I++   F S L         R         +       ++E+  GK+ L
Sbjct: 934  MLEELLSEGRKILLFSQFTSMLSLIEEELQKRSLTYSLLTGSTTDRRTPVREFQSGKVSL 993

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    + ++ F  WW+       +E     R  + G  + VFVY LI
Sbjct: 994  FLISLKAGGTGLNLTA-ADTVIHFDPWWNPA-----VENQATDRAYRIGQNKPVFVYKLI 1047

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
            A+ T++E +      K+ +   LL+ 
Sbjct: 1048 ARGTVEEKIQALQEDKAALAGSLLDG 1073


>gi|218233639|ref|YP_002366534.1| putative helicase [Bacillus cereus B4264]
 gi|218161596|gb|ACK61588.1| putative helicase [Bacillus cereus B4264]
          Length = 1064

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|228903720|ref|ZP_04067840.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
 gi|228855988|gb|EEN00528.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
          Length = 856

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKNRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|229109309|ref|ZP_04238907.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
 gi|228674146|gb|EEL29392.1| Helicase, SWF/SNF [Bacillus cereus Rock1-15]
          Length = 1064

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229144464|ref|ZP_04272868.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
 gi|228638999|gb|EEK95425.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST24]
          Length = 1064

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229150056|ref|ZP_04278279.1| Helicase, SWF/SNF [Bacillus cereus m1550]
 gi|228633355|gb|EEK89961.1| Helicase, SWF/SNF [Bacillus cereus m1550]
          Length = 1064

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            AQ TI+E + +   +K  +   ++   +++
Sbjct: 1020 AQGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|51891795|ref|YP_074486.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855484|dbj|BAD39642.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 989

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 22/208 (10%)

Query: 3   QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    +E                  +   +  Q+ N       +         KI  L 
Sbjct: 764 LYEAIVQETLERAAQADGIQRQAAVLAGLTRLKQVCNHPAAATGDGPLVG-RSGKIDRLV 822

Query: 61  VIIEKA--NAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
            ++++        ++   F              L         G    +    +  +  G
Sbjct: 823 QLLQEVLAAGEQALLFTQFARFGGRLQAYLAETLGCEVLFLHGGTPQPERDRLVARFQAG 882

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + PL      + G GLNL      +     WW+       +E     R  + G  R V V
Sbjct: 883 EAPLFILSLKAGGLGLNLTA-ATHVFHVDRWWNPA-----VEDQATDRAYRIGQTRRVLV 936

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + LI   T++E + + L  K  +   ++
Sbjct: 937 HRLITAGTLEERIDRLLAEKRALAGQVI 964


>gi|94309439|ref|YP_582649.1| SNF2-like protein [Cupriavidus metallidurans CH34]
 gi|93353291|gb|ABF07380.1| Superfamily II DNA/RNA helicase, SNF2 family [Cupriavidus
            metallidurans CH34]
          Length = 1025

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 37/228 (16%)

Query: 4    YHKFQRELYCDLQG----------------ENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
            Y   +R+   + +                 E     +  ++ ++  + A        +  
Sbjct: 789  YEALRRQALSEAERALLRPRKDKKAPAAMTEPEARIHVLAQLMRMRRAACDPRLVTPD-- 846

Query: 48   WKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLD 95
                   K++A   +     AN    +V   F   L  L++                   
Sbjct: 847  -VGQPGAKVRAFAELAATLAANGHKTLVFSQFVDFLQMLRQALVDAGLAWQYLDGATPAG 905

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +    +  +  G+  +      + G GLNL    + +V    WW+        E   + R
Sbjct: 906  ERTRRVAAFQAGEGDVFLISLKAGGFGLNLTA-ADYIVIADPWWNPAA-----EDQAMGR 959

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              + G +R V VY LIA  TI+E ++   + K  + D +L+A+  E I
Sbjct: 960  AHRIGQQRPVTVYRLIAAGTIEERIVDLHQGKRALADGVLDAMDGEAI 1007


>gi|213964455|ref|ZP_03392655.1| SNF2/RAD54 family protein [Corynebacterium amycolatum SK46]
 gi|213952648|gb|EEB64030.1| SNF2/RAD54 family protein [Corynebacterium amycolatum SK46]
          Length = 1079

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
             Y +  +++   L+                    +K  Q+ N   +Y  +      H   
Sbjct: 789  LYQEAVKDIEDKLKRSKRNRSGNFGRKSIILGGIMKLKQICNHPAHYQHDGSGLLNHGQH 848

Query: 53   -DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDP 98
               K+  LE ++++   N    +V   F      L   F               T  +  
Sbjct: 849  RSGKVARLEELVDEIVQNGERALVFTQFVEFGKMLAPHFSKRLGVDIPFIQGAMTPAQRE 908

Query: 99   CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + E+N     P++     + G G+NL    N ++    WW+       +E     R  
Sbjct: 909  KVVAEFNAPDGPPIILLSTLAAGVGINLVA-ANHVIHIDRWWNPA-----VENQATDRSY 962

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G ++ V V+ L++  T++E + + +  K+ + D ++ A + +   +
Sbjct: 963  RIGQRKDVHVHKLVSVGTLEERIDELIFEKAELADAVVRAGETKLTEM 1010


>gi|220907028|ref|YP_002482339.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
 gi|219863639|gb|ACL43978.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7425]
          Length = 1112

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 65/216 (30%), Gaps = 25/216 (11%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----KI 56
             Y    ++    +             +   K  Q+ N       +   +++       K 
Sbjct: 876  LYEATVQDSLAAISAAAGIQRRGLILATLTKLKQICNHPAQLLRQTSLQDLPHRSGKLKR 935

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +    A     ++   F              L              +    +  + 
Sbjct: 936  LEEMLEEALAEGDRALIFSQFAEMGKLLQLYLREQLGWETLFLSGSTPKPQREAMVDRFQ 995

Query: 106  EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      +      + G GLNL    N +  F  WW+       +E     R  + G KR
Sbjct: 996  QDPQGPRIFILSLKAGGVGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVFRIGQKR 1049

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+  ++  T++E + ++L +K  + + ++ A +
Sbjct: 1050 NVQVHKFVSTGTLEEKIHEQLESKKALAEQVVGAGE 1085


>gi|88812636|ref|ZP_01127883.1| helicase, SNF2 family protein [Nitrococcus mobilis Nb-231]
 gi|88790052|gb|EAR21172.1| helicase, SNF2 family protein [Nitrococcus mobilis Nb-231]
          Length = 1171

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y    RE    +QGE+             +   Q+ N    Y  +     +H  K + L
Sbjct: 945  VYESVVREGLEVIQGESDTFQRQGLVLQMILALKQICNHPRQYLNDGATTPMHSGKAQRL 1004

Query: 60   EVIIEKAN--AAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++ + +     ++V   F                R       G +  +    ++ +  
Sbjct: 1005 LELLTETHRLHEKVLVFTQFRKAGELLQGWIAEAFGRTPAFLHGGLSRKQRDALVERFQG 1064

Query: 107  GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +   +      + G GLNL    + +V F LWW+       +E     R  + G  + V
Sbjct: 1065 ERTERVFILSLKAAGTGLNLTA-ASQVVHFDLWWNPA-----VEAQATDRAYRIGQSQTV 1118

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V+ LI + T +E +   +R+K  + +L +   ++
Sbjct: 1119 QVHRLITRATFEERINAMIRSKRALSELTVGTGEQ 1153


>gi|118722509|gb|ABL09965.1| helicase [Streptomyces echinatus]
          Length = 1011

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DE 54
           + Y     E +     L        N      +  Q+ N    +  E+            
Sbjct: 773 RLYRAALDEAFDTDDGLGSGIQRQGNVLRLLTRLKQICNHPAQFLGEEDTDAGRLAGRSG 832

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKDPCT 100
           K++    ++ +   +    +V   +      L +                G   +     
Sbjct: 833 KLERATEMLGEVVASGERALVFTQYRVMGDLLARHLSGELGLARVPFLHGGTPTEHRDRM 892

Query: 101 IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +   +   PLL     + G GLNL    + ++ +  WW+       +E     R  +
Sbjct: 893 VRAFQEDDDAPPLLLISLKAGGFGLNLTR-ASHVMHYDRWWNPA-----VEDQATDRAHR 946

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  + V V+ L+  +T +E +   L++K ++ D ++ A +
Sbjct: 947 IGQTKTVLVHKLVTADTFEERIDALLQSKRSLADAVVGAGE 987


>gi|260434360|ref|ZP_05788330.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
            8109]
 gi|260412234|gb|EEX05530.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
            8109]
          Length = 1065

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +    +   +  Q+ N       E    +       K++
Sbjct: 835  LYSKTVEDTLDAIARAPRGQRHGQVLALLTRLKQICNHPALAMSEGAVDDGFLGRSAKLQ 894

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             LE I+++        ++   F      LQ                G    +    +  +
Sbjct: 895  RLEEILDEVIEAGDRALLFTQFAEWGHLLQAWMQQRWKSEVPFLHGGTRKSERQAMVDRF 954

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 955  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1008

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1009 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDVIGSGE 1045


>gi|163798146|ref|ZP_02192082.1| swf/snf family helicase [alpha proteobacterium BAL199]
 gi|159176589|gb|EDP61167.1| swf/snf family helicase [alpha proteobacterium BAL199]
          Length = 1381

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 25/212 (11%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 1163 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 1219

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              +++    N    +V   F + LA             +              +  +  G
Sbjct: 1220 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 1279

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V    WW+       +E     R  + G +R V +
Sbjct: 1280 TADVFLISLRAGGTGLNLTA-ADYVVHLDPWWNPA-----VEDQASDRAHRIGQERPVTI 1333

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI Q++I+E +L   R K  +   +L   +
Sbjct: 1334 YRLIMQDSIEEQILHLHRDKRDLAAGILEGGE 1365


>gi|329904224|ref|ZP_08273705.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
 gi|327548098|gb|EGF32821.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium IMCC9480]
          Length = 1101

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y         ++   +    +   +       +K  Q+         ++        K+
Sbjct: 872  LYEIVRTAMHDKVRAVIAEMGLARSHIVVLDALLKLRQVCCDPRLVKLDQATNVKESAKL 931

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
            + L  ++         +++   F   LA + KA  +                  ++ + E
Sbjct: 932  ELLLSMLPDMIEEGRKVLLFSQFTGMLALVAKAVEKAGIPYVLLTGDTTDRATPVRRFQE 991

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++PL      + G GLNL    + ++ +  WW+        E     R  + G ++ VF
Sbjct: 992  GEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRLGQEKPVF 1045

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI   +I+E ++     K+ + + +L+ 
Sbjct: 1046 VYKLIVAGSIEEKIVALQDKKAALAEGILSE 1076


>gi|147676745|ref|YP_001210960.1| hypothetical protein PTH_0410 [Pelotomaculum thermopropionicum SI]
 gi|146272842|dbj|BAF58591.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 1256

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +   ++  +++                   Q+ N  V+Y ++    + H  K +   
Sbjct: 1030 LYRQVVEQVMEEIEHSEGITRKGLVFKLITSLKQICNHPVHYSKKGKPAKEHSGKAEKAL 1089

Query: 61   VIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE- 106
             ++ +        ++   +              L      F  G    K    ++++ E 
Sbjct: 1090 DLLAQIAAAGEKALIFTQYREMGELLVEMIREELQEEALFFHGGLPRQKRDEMVKKFQED 1149

Query: 107  -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G  P +     + G GLNL      ++ + LWW+       +E     R  + G  R V
Sbjct: 1150 KGAAPFMVVSLKAGGTGLNLTA-ATHVIHYDLWWNPA-----VEDQATDRTYRIGQTRTV 1203

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V+ LI+  T +E +   + +K  +  L + A +
Sbjct: 1204 MVHRLISLGTFEEKINTMMASKRELAGLTVAAGE 1237


>gi|78214026|ref|YP_382805.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78198485|gb|ABB36250.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 1065

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +    +   +  Q+ N       E    +       K++
Sbjct: 835  LYSKTVEDTLDAIARAPRGQRHGQVLALLTRLKQICNHPALALSEGAVDDGFLGRSAKLQ 894

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             LE I+++        ++   F      L+                G   ++    +  +
Sbjct: 895  RLEEILDEVIEAGDRALLFTQFAEWGHLLRAWMQQRWKSEVPFLHGGTRKNERQAMVDRF 954

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 955  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1008

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1009 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDVIGSGE 1045


>gi|329940611|ref|ZP_08289892.1| helicase [Streptomyces griseoaurantiacus M045]
 gi|329300672|gb|EGG44569.1| helicase [Streptomyces griseoaurantiacus M045]
          Length = 940

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 24/221 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y    RE    ++     A             Q+ +    Y +E             K+
Sbjct: 710 LYEAVVRESMLAIETAEGMARRGMVLKLLTSLKQICDHPALYLKEDPATARALGERSGKL 769

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
             L+ +++         +V   +      +                G  + +    +  +
Sbjct: 770 ALLDELLDTLLSEDGSALVFTQYVGMARLITAHLAARAVPVDLLHGGTPVPERERMVDRF 829

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            EG  P+L     + G GLNL   G+ +V    WW+       +E     R  + G  + 
Sbjct: 830 QEGATPVLVLSLKAAGTGLNLTRAGH-VVHVDRWWNPA-----VEEQATDRAYRIGQTQP 883

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V+ LI + T+++ +   LR K  + D +L + +     +
Sbjct: 884 VQVHRLITEGTVEDRIDDMLRAKRALADAILGSGETSLTEL 924


>gi|228920559|ref|ZP_04083904.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
 gi|228839189|gb|EEM84485.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
          Length = 1064

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGNL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|284038229|ref|YP_003388159.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283817522|gb|ADB39360.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1127

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 19/205 (9%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  R      +  +I     +      K  Q+ N  V  ++ + +      KI  L 
Sbjct: 910  AYEQEFRNYLLSTKEGDIPRAKLHILQGLTKLRQICNAPVLLND-EEFYGNSSAKIDVLM 968

Query: 61   V-IIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWN-EGKIP 110
              I  K+    I+V   F + L         R           +     +  +  +  + 
Sbjct: 969  EQIENKSPNHKILVFSQFVTMLDLIKKELEARQIGFEYLTGQTNDRQAIVNRFQTDASVR 1028

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    + +     WW+       +E   + R  + G K+ V    L
Sbjct: 1029 VFLISLKAGGTGLNLTQ-ADYVYLVDPWWNPA-----VENQAIDRSYRIGQKKNVVAVRL 1082

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I  NTI+E +L    TK  + D L+
Sbjct: 1083 ICPNTIEEKILLLQETKQELADKLV 1107


>gi|259907055|ref|YP_002647411.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
 gi|224962677|emb|CAX54132.1| Putative helicase [Erwinia pyrifoliae Ep1/96]
          Length = 883

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y + ++      +L    QG            +K  Q+        + +  K  H  K
Sbjct: 659 ELYDQVRKAMQDRVQLAVQQQGAGRSHLLVLDALLKLRQICCDPRLLADARAEKVRHSAK 718

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           +  L  ++    A    I++   F + L  +     + R                ++ + 
Sbjct: 719 LALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQKARIPFVTLTGATRDRNEPVRSFQ 778

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 779 QGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAWRLGQDKPV 832

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LIA  TI+E ++   + K+ +   +L+ 
Sbjct: 833 FVYKLIAAGTIEEKIVALQQQKAELAGEILDD 864


>gi|148262677|ref|YP_001229383.1| non-specific serine/threonine protein kinase [Geobacter
           uraniireducens Rf4]
 gi|146396177|gb|ABQ24810.1| Non-specific serine/threonine protein kinase [Geobacter
           uraniireducens Rf4]
          Length = 898

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 2   KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y +  +E      + Q          S  ++  Q+ N       +  + E    K   
Sbjct: 666 RLYGQSVKELAEALREQQEGMKRRGLILSSLMRFKQICNHPGQALGDGDYAEERSGKFVR 725

Query: 59  LEVIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  + E+  +    +++   F                R       G  + +    +  + 
Sbjct: 726 LRELAEEIASRQEKVLIFTQFREMTAPIATFLATLFGRPGLVLHGGTPVAERKKLVDRFQ 785

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E   P       + G GLNL    + ++ F  WW+       +E     R  + G K+ 
Sbjct: 786 HEDGPPFFVLSLKAGGSGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAFRIGQKKN 839

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V V+  + + T++E +   +  KS +   LL+  +
Sbjct: 840 VMVHKFVCKGTVEEKIDALIAAKSGMATELLDGGE 874


>gi|308067420|ref|YP_003869025.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
 gi|305856699|gb|ADM68487.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
          Length = 1121

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K Q E    L  E          +   +  QL      + E          K
Sbjct: 898  KLYTAYLAKLQHETLKHLNEEGFQKNRIKILAGLTRLRQLCCHPGLFIEGYT---GSSAK 954

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
             + L  II +   +   I++   F + L  +                     +       
Sbjct: 955  FEQLLEIITECLSSGKRILIFSQFTTMLQMIGRELAREGVSYFYLDGQTPAPERVELCSR 1014

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+       +E     R  + G K+
Sbjct: 1015 FNEGERELFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQATNRAHRMGQKK 1068

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+AQ T+++ + +  + K  + D ++ 
Sbjct: 1069 VVQVIRLVAQGTVEDKMYELQQKKKNMIDQVIQ 1101


>gi|309388673|gb|ADO76553.1| SNF2-related protein [Halanaerobium praevalens DSM 2228]
          Length = 1082

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 24/211 (11%)

Query: 4    YHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y     +L  +L      +G N    N  +   K  Q+ N       EK     +  K++
Sbjct: 855  YQTVLADLRGELSQTVSDKGFNRSRINILAALTKLRQICNHPALILGEKA-STYNSGKLE 913

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNE 106
            AL+ ++    +    IIV   F   L  ++           +  G T  +     +  N 
Sbjct: 914  ALKELLADALSGGHKIIVFSQFVKMLKLIRSELDQQGLNYLYLDGSTRKRMQKVKEFNNN 973

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++ +      + G GLNL    +++V    WW+      M+ER    R  + G +  V 
Sbjct: 974  CEVKIFLISLKAGGVGLNLTA-ADMVVHVDPWWNP-----MVERQATDRAHRLGQQNRVM 1027

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + T++E +L+    K  + + ++  
Sbjct: 1028 VYKLITRGTVEEKMLKLQERKQDLFNNVIED 1058


>gi|291005462|ref|ZP_06563435.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 959

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y    R +  +  +                  Q+ N   ++  +         K++  
Sbjct: 728 ELYRATVRGMLDEQGMGEGIARRGRILKLLTALKQICNHPAHFLRQPGPLHGRSGKLERT 787

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPCTIQEWN 105
             ++ +        +V   +                         G +  +    ++E+ 
Sbjct: 788 AEMLSEVVAAGDRALVFTQYRVMGELLAGHLAAELELPAVPFLHGGVSAARRSRMVEEFQ 847

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +   P+L     + G GLNL      +V +  WW+       +E     R  + G  R
Sbjct: 848 HSDDAAPVLVVSLKAGGTGLNLTR-ATHVVHYDRWWNPA-----VEDQATDRAHRIGQTR 901

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ L+   T++E +   L  K  + D ++ + +
Sbjct: 902 GVHVHKLVTHGTLEERIADLLDCKRGLADAVVGSGE 937


>gi|134099632|ref|YP_001105293.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912255|emb|CAM02368.1| SNF2/RAD54 family helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 956

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y    R +  +  +                  Q+ N   ++  +         K++  
Sbjct: 725 ELYRATVRGMLDEQGMGEGIARRGRILKLLTALKQICNHPAHFLRQPGPLHGRSGKLERT 784

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPCTIQEWN 105
             ++ +        +V   +                         G +  +    ++E+ 
Sbjct: 785 AEMLSEVVAAGDRALVFTQYRVMGELLAGHLAAELELPAVPFLHGGVSAARRSRMVEEFQ 844

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +   P+L     + G GLNL      +V +  WW+       +E     R  + G  R
Sbjct: 845 HSDDAAPVLVVSLKAGGTGLNLTR-ATHVVHYDRWWNPA-----VEDQATDRAHRIGQTR 898

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ L+   T++E +   L  K  + D ++ + +
Sbjct: 899 GVHVHKLVTHGTLEERIADLLDCKRGLADAVVGSGE 934


>gi|158333854|ref|YP_001515026.1| SNF2 family helicase putative [Acaryochloris marina MBIC11017]
 gi|158304095|gb|ABW25712.1| helicase, SNF2 family, putative [Acaryochloris marina MBIC11017]
          Length = 1060

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +E+  D+             S  +K  Q+ N    +  +E  +      K+  L
Sbjct: 828  LYEAVVKEISKDIDEVDGIQRKGMILSTLLKLKQICNHPRQFLQDESDFTPERSHKLSRL 887

Query: 60   EVIIEK--ANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
              +I +       ++V   F                        G   +K    I E+ +
Sbjct: 888  TEMITEVMEEGESLLVFTQFTELGDALEKYLRQTHHYTTYYIHGGTNRNKREQMITEFQD 947

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+       +E     R  + G K+ 
Sbjct: 948  PETGPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQKKN 1001

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  +A  T++E + + +  K  +   ++ + +
Sbjct: 1002 VFVHKFVAIGTLEERIDEMIEDKKKLAGAIVGSDE 1036


>gi|310766267|gb|ADP11217.1| SWI/SNF-like matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia sp. Ejp617]
          Length = 852

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y + ++      +L    QG            +K  Q+        + +  K  H  K
Sbjct: 628 ELYDQVRKAMQDRVQLAVQQQGAGRSHLLVLDALLKLRQICCDPRLLADARAEKVRHSAK 687

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           +  L  ++    A    I++   F + L  +     + R                ++ + 
Sbjct: 688 LALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQKARIPFVTLTGATRDRNEPVRSFQ 747

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 748 QGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAWRLGQDKPV 801

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LIA  TI+E ++   + K+ +   +L+ 
Sbjct: 802 FVYKLIAAGTIEEKIVALQQQKAELAGEILDD 833


>gi|297195014|ref|ZP_06912412.1| helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152588|gb|EDY65843.2| helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 969

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 46/243 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEE-------KHWKEVH- 52
            Y    RE    ++     A             Q+ N    + +E         W E   
Sbjct: 718 LYEAVVRETMAAIEAAEGIARRGLVMKLLTALKQICNHPAQFLKESGGGRGAGAWSEGDS 777

Query: 53  ------------------DEKIKALEVIIEK--ANAAPIIVAYHFNSD----------LA 82
                               K+  L+ ++E   +    ++V   + S            A
Sbjct: 778 RSGARSGSGGASVRLAGRSGKLALLDELLETILSEDGSVLVFTQYVSMARLLSAHLTSRA 837

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              +    G  + +    +  +  G++P+      + G GLNL   G+ ++ +  WW+  
Sbjct: 838 IPSQLLHGGTPITERERMVDRFQSGEVPVFILSLKAAGTGLNLTRAGH-VIHYDRWWNPA 896

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +E     R  + G  + V V+ L+ + T+++ + + L +K  + D +L + +   
Sbjct: 897 -----VEEQATDRAYRIGQTQPVQVHRLVTEGTVEDRIAEMLASKRALADAVLGSGEAAL 951

Query: 203 IHV 205
             +
Sbjct: 952 TEL 954


>gi|256617084|ref|ZP_05473930.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|257088353|ref|ZP_05582714.1| phage-associated helicase [Enterococcus faecalis D6]
 gi|256596611|gb|EEU15787.1| phage-associated helicase [Enterococcus faecalis ATCC 4200]
 gi|256996383|gb|EEU83685.1| phage-associated helicase [Enterococcus faecalis D6]
          Length = 451

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 8/198 (4%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y KF+ +L   L+  +I+A N+A  + K LQ+ANGA+ YDE      +HD+K+ ALE +I
Sbjct: 256 YDKFKADLVLQLKDADIDAANAAVLSNKLLQMANGAI-YDEFNVSHHIHDQKLDALEDLI 314

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           E AN   I++AY F  DL R+++ F       K    I+EWN+G IP+   HPAS GHGL
Sbjct: 315 EGANGKSILIAYWFQHDLERIKERFK--VRQIKTAKDIEEWNKGNIPIGVIHPASAGHGL 372

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ GG+ LV+F L W LE +QQ   R+      + G    V ++++IA++TIDE V+  
Sbjct: 373 NLQAGGSTLVWFGLTWSLELYQQTNARLW-----RQGQNETVVIHHIIAKDTIDEDVMLA 427

Query: 184 LRTKSTIQDLLLNALKKE 201
           L+ K   Q  L++A+K  
Sbjct: 428 LKLKDKTQASLIDAVKAR 445


>gi|224367136|ref|YP_002601299.1| SWI/SNF helicase family protein [Desulfobacterium autotrophicum HRM2]
 gi|223689852|gb|ACN13135.1| SWI/SNF helicase family protein [Desulfobacterium autotrophicum HRM2]
          Length = 1392

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 25/209 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y   + +   +++              ++  K  QL               +   K+K 
Sbjct: 1171 LYEAHRLKAVENIEAAEDTPGQKHLRILAELTKLRQLCCNPSLVLPGTK---ITSSKLKV 1227

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
               ++++   N    +V   F   L              +         +    I  +  
Sbjct: 1228 FGDMVDELLENNHKALVFSQFVGHLAILKKFLDAKKISYQYLDGSTRAGQRRERINAFQS 1287

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   L      + G GLNL    + ++    WW+       +E     R  + G  R V 
Sbjct: 1288 GVGELFLISLKAGGFGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAYRIGQTRPVT 1341

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY L+ + +I+E +L   R K  + + LL
Sbjct: 1342 VYRLVVKGSIEERILDLHREKRDLAESLL 1370


>gi|308067308|ref|YP_003868913.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
 gi|305856587|gb|ADM68375.1| Superfamily II DNA/RNA helicase, SNF2 family [Paenibacillus polymyxa
            E681]
          Length = 1041

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
             Y     +L   L G+   A          K  Q+ +        +       +  K++ 
Sbjct: 809  LYRGVVDQLLGTLDGQIGMARKGLVLSSLTKLKQICDHPGLIIPGRADSGKTENSGKMER 868

Query: 59   LEVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
            L  ++   + N    ++   + S                      G    +    +  + 
Sbjct: 869  LLELVETIRENGESALIFTQYVSMGELLVSRLAKIFGEEPYFLHGGLAKTRRDEMVHNFQ 928

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +G+ P +      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 929  QGEGPNIFVLSLRAGGVGLNLTR-ASHVIHYDRWWNPA-----VENQATDRVFRIGQSRN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ LI Q T++E + + + +K  + + ++ + +
Sbjct: 983  VQVHKLICQGTLEERIDELIESKKALSEQVVGSGE 1017


>gi|262374572|ref|ZP_06067846.1| predicted protein [Acinetobacter junii SH205]
 gi|262310568|gb|EEY91658.1| predicted protein [Acinetobacter junii SH205]
          Length = 1115

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQ---RELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +   +E    +   +G            +K  Q+         +     + H  
Sbjct: 889  KLYEAVRATMQENIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKTGQAHSA 948

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEW 104
            K++ L  ++         I++   F S L  +++                 K    I  +
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQQLHHAEIGYVKLTGKTKKRDEVITAF 1008

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + 
Sbjct: 1009 QSGQVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQASDRAWRIGQDKP 1062

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFVY LI   +I+E +L   + K+ +   +L+
Sbjct: 1063 VFVYKLITNKSIEEKILALQQNKAELAQSILS 1094


>gi|283476853|emb|CAY72692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
           12163]
          Length = 852

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 2   KQYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y + ++      +L    QG            +K  Q+        + +  K  H  K
Sbjct: 628 ELYDQVRKAMQDRVQLAVQQQGAGRSHLLVLDALLKLRQICCDPRLLADARAEKVRHSAK 687

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           +  L  ++    A    I++   F + L  +     + R                ++ + 
Sbjct: 688 LALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELQKARIPFVTLTGATRDRNEPVRSFQ 747

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 748 QGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAWRLGQDKPV 801

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LIA  TI+E ++   + K+ +   +L+ 
Sbjct: 802 FVYKLIAAGTIEEKIVALQQQKAELAGEILDD 833


>gi|253798840|ref|YP_003031841.1| helicase helZ [Mycobacterium tuberculosis KZN 1435]
 gi|297634684|ref|ZP_06952464.1| helicase helZ [Mycobacterium tuberculosis KZN 4207]
 gi|297731672|ref|ZP_06960790.1| helicase helZ [Mycobacterium tuberculosis KZN R506]
 gi|313659007|ref|ZP_07815887.1| helicase helZ [Mycobacterium tuberculosis KZN V2475]
 gi|253320343|gb|ACT24946.1| helicase helZ [Mycobacterium tuberculosis KZN 1435]
 gi|328458599|gb|AEB04022.1| helicase helZ [Mycobacterium tuberculosis KZN 4207]
          Length = 849

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 616 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 675

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 676 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 735

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 736 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 789

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 790 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 821


>gi|215446324|ref|ZP_03433076.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis T85]
          Length = 547

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 314 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 373

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 374 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 433

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 434 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 487

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 488 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 519


>gi|329922954|ref|ZP_08278470.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328941727|gb|EGG38012.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 1111

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K ++E    L   G         +   +  Q+      + +     E    K
Sbjct: 886  KLYTAYLAKLRQETLKHLAQDGFQKNRIRILAGITRLRQICCHPALFVDGY---EGGSAK 942

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            ++ L   IE+       ++V   F   L                        +     + 
Sbjct: 943  LEQLLETIEECRLAGRRMLVFSQFTGMLNLIAGELGYRGIPFFYLDGQTPGSERVELCER 1002

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  +      + G GLNL  G + ++ + LWW+    Q       + R  + G K+
Sbjct: 1003 FNEGEREVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAMDRAHRIGQKK 1056

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   +AQ+TI++ ++   + K  + + L+ 
Sbjct: 1057 VVQVIRFVAQDTIEDKMVALQQKKKDLIEELVQ 1089


>gi|215431026|ref|ZP_03428945.1| helicase helZ [Mycobacterium tuberculosis EAS054]
 gi|289754211|ref|ZP_06513589.1| helicase helZ [Mycobacterium tuberculosis EAS054]
 gi|289694798|gb|EFD62227.1| helicase helZ [Mycobacterium tuberculosis EAS054]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|306780129|ref|ZP_07418466.1| helicase helZ [Mycobacterium tuberculosis SUMu002]
 gi|306789239|ref|ZP_07427561.1| helicase helZ [Mycobacterium tuberculosis SUMu004]
 gi|306793568|ref|ZP_07431870.1| helicase helZ [Mycobacterium tuberculosis SUMu005]
 gi|308326957|gb|EFP15808.1| helicase helZ [Mycobacterium tuberculosis SUMu002]
 gi|308334225|gb|EFP23076.1| helicase helZ [Mycobacterium tuberculosis SUMu004]
 gi|308338024|gb|EFP26875.1| helicase helZ [Mycobacterium tuberculosis SUMu005]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|289554116|ref|ZP_06443326.1| LOW QUALITY PROTEIN: helicase helZ [Mycobacterium tuberculosis KZN
           605]
 gi|289438748|gb|EFD21241.1| LOW QUALITY PROTEIN: helicase helZ [Mycobacterium tuberculosis KZN
           605]
          Length = 911

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 678 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 737

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 738 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 797

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 798 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 851

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 852 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 883


>gi|237804906|ref|YP_002889060.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
 gi|231273206|emb|CAX10119.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/TZ1A828/OT]
          Length = 1199

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ N   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  +G++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|15609238|ref|NP_216617.1| helicase HelZ [Mycobacterium tuberculosis H37Rv]
 gi|2909552|emb|CAA17284.1| PROBABLE HELICASE HELZ [Mycobacterium tuberculosis H37Rv]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|76789292|ref|YP_328378.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|237802984|ref|YP_002888178.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
 gi|76167822|gb|AAX50830.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|231274218|emb|CAX11012.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            B/Jali20/OT]
          Length = 1199

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ N   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  +G++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|15841592|ref|NP_336629.1| Snf2/Rad54 family helicase [Mycobacterium tuberculosis CDC1551]
 gi|13881841|gb|AAK46443.1| helicase, SNF2/RAD54 family [Mycobacterium tuberculosis CDC1551]
          Length = 954

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 721 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 780

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 781 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 840

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 841 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 894

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 895 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 926


>gi|31793283|ref|NP_855776.1| helicase HelZ [Mycobacterium bovis AF2122/97]
 gi|121637985|ref|YP_978209.1| putative helicase helZ [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990479|ref|YP_002645166.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31618875|emb|CAD96980.1| PROBABLE HELICASE HELZ [Mycobacterium bovis AF2122/97]
 gi|121493633|emb|CAL72108.1| Probable helicase helZ [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224773592|dbj|BAH26398.1| putative helicase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|148823314|ref|YP_001288068.1| helicase helZ [Mycobacterium tuberculosis F11]
 gi|215403485|ref|ZP_03415666.1| putative helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|215411805|ref|ZP_03420597.1| putative helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|254232263|ref|ZP_04925590.1| helicase helZ [Mycobacterium tuberculosis C]
 gi|254551134|ref|ZP_05141581.1| putative helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260205390|ref|ZP_05772881.1| putative helicase [Mycobacterium tuberculosis K85]
 gi|289574781|ref|ZP_06455008.1| helicase helZ [Mycobacterium tuberculosis K85]
 gi|289745376|ref|ZP_06504754.1| helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|294997044|ref|ZP_06802735.1| putative helicase [Mycobacterium tuberculosis 210]
 gi|298525599|ref|ZP_07013008.1| helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|306784872|ref|ZP_07423194.1| helicase helZ [Mycobacterium tuberculosis SUMu003]
 gi|306797957|ref|ZP_07436259.1| helicase helZ [Mycobacterium tuberculosis SUMu006]
 gi|306803836|ref|ZP_07440504.1| helicase helZ [Mycobacterium tuberculosis SUMu008]
 gi|306808409|ref|ZP_07445077.1| helicase helZ [Mycobacterium tuberculosis SUMu007]
 gi|306968232|ref|ZP_07480893.1| helicase helZ [Mycobacterium tuberculosis SUMu009]
 gi|124601322|gb|EAY60332.1| helicase helZ [Mycobacterium tuberculosis C]
 gi|148721841|gb|ABR06466.1| helicase helZ [Mycobacterium tuberculosis F11]
 gi|289539212|gb|EFD43790.1| helicase helZ [Mycobacterium tuberculosis K85]
 gi|289685904|gb|EFD53392.1| helicase helZ [Mycobacterium tuberculosis 02_1987]
 gi|298495393|gb|EFI30687.1| helicase helZ [Mycobacterium tuberculosis 94_M4241A]
 gi|308330390|gb|EFP19241.1| helicase helZ [Mycobacterium tuberculosis SUMu003]
 gi|308341711|gb|EFP30562.1| helicase helZ [Mycobacterium tuberculosis SUMu006]
 gi|308345201|gb|EFP34052.1| helicase helZ [Mycobacterium tuberculosis SUMu007]
 gi|308349504|gb|EFP38355.1| helicase helZ [Mycobacterium tuberculosis SUMu008]
 gi|308354134|gb|EFP42985.1| helicase helZ [Mycobacterium tuberculosis SUMu009]
 gi|323719315|gb|EGB28456.1| helicase helZ [Mycobacterium tuberculosis CDC1551A]
 gi|326903713|gb|EGE50646.1| helicase helZ [Mycobacterium tuberculosis W-148]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|311742708|ref|ZP_07716517.1| helicase [Aeromicrobium marinum DSM 15272]
 gi|311314336|gb|EFQ84244.1| helicase [Aeromicrobium marinum DSM 15272]
          Length = 717

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 25/209 (11%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y +        ++            +   +C Q+ +     +           K+  L
Sbjct: 498 RLYEQTVAAGMQRVRESTSMQRRGQVLALITRCKQVCDHPALVEHRGA-----SAKLDVL 552

Query: 60  EVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEG 107
           + +++         +V   +      L   + +     +              + E+  G
Sbjct: 553 DDLVDTIVAEDGRALVFTQYVRMGELLVDHWTEREVSHRFLHGSLPVGQRQRMVDEFQAG 612

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +P+L     + G GLNL    + ++ +  WW+       +E     R  + G  + V V
Sbjct: 613 DLPVLLLSLRAGGTGLNLTA-ADHVIHYDRWWNPA-----VEDQATDRAHRIGQTKPVQV 666

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + L    T+++ +   +  K  + D ++N
Sbjct: 667 HRLTVGGTVEDGIADLIERKRALADAVIN 695


>gi|260187090|ref|ZP_05764564.1| putative helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289447722|ref|ZP_06437466.1| helicase helZ [Mycobacterium tuberculosis CPHL_A]
 gi|289420680|gb|EFD17881.1| helicase helZ [Mycobacterium tuberculosis CPHL_A]
          Length = 1014

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 781 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 840

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 841 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 900

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 901 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 954

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 955 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 986


>gi|148661915|ref|YP_001283438.1| putative helicase HelZ [Mycobacterium tuberculosis H37Ra]
 gi|306776343|ref|ZP_07414680.1| helicase helZ [Mycobacterium tuberculosis SUMu001]
 gi|306972457|ref|ZP_07485118.1| helicase helZ [Mycobacterium tuberculosis SUMu010]
 gi|307080168|ref|ZP_07489338.1| helicase helZ [Mycobacterium tuberculosis SUMu011]
 gi|307084748|ref|ZP_07493861.1| helicase helZ [Mycobacterium tuberculosis SUMu012]
 gi|148506067|gb|ABQ73876.1| putative helicase HelZ [Mycobacterium tuberculosis H37Ra]
 gi|308215227|gb|EFO74626.1| helicase helZ [Mycobacterium tuberculosis SUMu001]
 gi|308358097|gb|EFP46948.1| helicase helZ [Mycobacterium tuberculosis SUMu010]
 gi|308362031|gb|EFP50882.1| helicase helZ [Mycobacterium tuberculosis SUMu011]
 gi|308365678|gb|EFP54529.1| helicase helZ [Mycobacterium tuberculosis SUMu012]
          Length = 1013

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 840 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 899

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 900 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 953

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 954 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 985


>gi|303240851|ref|ZP_07327363.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
 gi|302591579|gb|EFL61315.1| SNF2-related protein [Acetivibrio cellulolyticus CD2]
          Length = 969

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 23/206 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y  F+ EL   ++   IE  +    +   +  Q+      + ++         K++    
Sbjct: 753 YKSFKEELIPKIEEFGIEKNHIEILAALTRLRQICAHPATFLDDYT---GGSGKLELAMD 809

Query: 62  IIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           II +   +   I+V   F   L  +                    ++    I  +N  + 
Sbjct: 810 IIIQSIDSGHSILVFSQFTKMLKIIRNELENSGINYYYLDGSMKPEERMMEIDNFNSDRE 869

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    ++++ F  WW+       +E     R  + G K  V VY 
Sbjct: 870 AVFLISLKAGGTGLNLTK-ADVIIHFDPWWNPA-----VEDQASDRAHRMGQKNVVQVYK 923

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           L+ + TI+E +      K  + + ++
Sbjct: 924 LLTEGTIEEKIANLQDRKRDLIESII 949


>gi|291520743|emb|CBK79036.1| Superfamily II DNA/RNA helicases, SNF2 family [Coprococcus catus
            GD/7]
          Length = 1096

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 79/221 (35%), Gaps = 30/221 (13%)

Query: 6    KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + Q+EL                ++  K  QL        +  H       K+     +I+
Sbjct: 883  QLQKELESQNDSMFKASKIQILAELTKLRQLCCDPALIYKNYH---GGSAKLDTCIQLIQ 939

Query: 65   --KANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              +A    I++   F S L            L          ++    +  +NE  IP+ 
Sbjct: 940  NARAGGHKILLFSQFTSMLDIIEHRLKLEHILYYRLDGSTKSEQRTRLVNAFNENAIPVF 999

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G +I++ +  WW+              R  + G    V VY LIA
Sbjct: 1000 LISLKAGGTGLNLT-GADIVIHYDPWWNAAAQ-----NQATDRAHRIGQTHTVTVYKLIA 1053

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
            ++TI+E +L+    K  + D +L+          K+E + +
Sbjct: 1054 RHTIEEKILELQENKKALSDQILSEEGVTASQLTKEELLQI 1094


>gi|229087719|ref|ZP_04219842.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
 gi|228695554|gb|EEL48416.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock3-44]
          Length = 858

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+   ++     K + 
Sbjct: 635 LYEQLVQDTLQNIEGLTGIERRGFILLMLNKLKQICNHPALYLKEETPIDIVQRSMKTQT 694

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      LQK                    +    I+++ 
Sbjct: 695 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKAERDKMIEQFQ 754

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 755 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 808

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 809 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 840


>gi|159027170|emb|CAO86802.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1020

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKA 58
           + Y +        ++       +    +  ++  Q+ N   ++  E          K+  
Sbjct: 782 QLYQQLVETTLQKIEETQGIQRHGLILTLLMQLKQICNHPAHFLKENSLETSQRSGKLLR 841

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           LE ++E+        ++   F      LQ    +                     I+ + 
Sbjct: 842 LEAMVEEVIAEGDRALIFTQFAEWGKLLQTHLQKKLAEEILFLSGSTKTKDRVEMIERFQ 901

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 902 NDPQGPKIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKR 955

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  I   T++E + + + +K  + +  ++A +
Sbjct: 956 NVQVHKFICTGTLEERINEMIESKKQLAEQTVDAGE 991


>gi|228999987|ref|ZP_04159559.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
 gi|228759929|gb|EEM08903.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock3-17]
          Length = 867

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  K++     K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      LQK                    +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|300869843|ref|YP_003784714.1| HepA Superfamily II D R helicase [Brachyspira pilosicoli 95/1000]
 gi|300687542|gb|ADK30213.1| HepA Superfamily II D R helicases SNF2 family [Brachyspira
           pilosicoli 95/1000]
          Length = 1005

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 22/215 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ +   +R+ +              S   +  Q+        ++         K     
Sbjct: 793 IEIFETVKRKGFAQ------SHIEIFSALTRLRQVCCHPRLMHQDLRGDSHTSGKFNMFI 846

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +I +  +    ++V   F   L  ++               T       +  +N G+ P
Sbjct: 847 EMIREAISGGHSVLVFSSFTRMLNIMRDAFNKLNINYLYLDGTTKNRMDLVHRFNAGEAP 906

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GL L    + ++ + LWW+       +E     R  + G KR V  Y L
Sbjct: 907 IFLLSLKAAGTGLTLTQ-ADTVIHYDLWWNPA-----VEDQATDRAYRIGQKRVVTNYKL 960

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + + TI+E +L+    K  + D ++     +   +
Sbjct: 961 VTRGTIEEKILELQNKKRVLIDTVVGDSMGDINKL 995


>gi|296436088|gb|ADH18262.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9768]
 gi|296437949|gb|ADH20110.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/11074]
 gi|297140449|gb|ADH97207.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            G/9301]
          Length = 1199

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ N   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  +G++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|196033339|ref|ZP_03100751.1| putative helicase [Bacillus cereus W]
 gi|195993773|gb|EDX57729.1| putative helicase [Bacillus cereus W]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|289758218|ref|ZP_06517596.1| superfamily II DNA/RNA helicase [Mycobacterium tuberculosis T85]
 gi|289713782|gb|EFD77794.1| superfamily II DNA/RNA helicase [Mycobacterium tuberculosis T85]
          Length = 545

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 312 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 371

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 372 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 431

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 432 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 485

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 486 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 517


>gi|282899415|ref|ZP_06307382.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281195679|gb|EFA70609.1| SNF2-related helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 1081

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y     +   ++Q  +         S  VK  Q+ N    Y  E   ++    K++ L
Sbjct: 845  ELYQNAVDKSLSEIQSASGLQRRGMILSLLVKLKQICNHPAQYLHESSLEKYSSAKLQRL 904

Query: 60   EVIIEK--ANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
            + ++E+  A  +  ++   F              L R            +    +  + +
Sbjct: 905  QEMLEEVIAEKSRALIFTQFAELGKLLQPYLAKHLDREIFFLYGTTGKKQREEMVDRFQQ 964

Query: 107  GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P++     + G GLNL    N +  F  WW+       +E     R  + G  + 
Sbjct: 965  DPQGPPIMILSLKAGGVGLNLTR-ANYVFHFDRWWNPA-----VENQATDRAFRIGQTQN 1018

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+  + + T++E +   + +K  +   ++++ ++
Sbjct: 1019 VQVHKFVCRGTLEEKIHDMIESKKQLAQQVISSGEE 1054


>gi|255311373|ref|ZP_05353943.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276]
 gi|255317674|ref|ZP_05358920.1| putative helicase (SWF/SNF family) protein [Chlamydia trachomatis
            6276s]
          Length = 1199

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ N   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICNHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  +G++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVRGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|228933137|ref|ZP_04095994.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
 gi|228826494|gb|EEM72270.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229090820|ref|ZP_04222049.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
 gi|228692523|gb|EEL46253.1| Helicase, SWF/SNF [Bacillus cereus Rock3-42]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229130493|ref|ZP_04259449.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
 gi|228652832|gb|EEL08714.1| Helicase, SNF2/RAD54 [Bacillus cereus BDRD-Cer4]
          Length = 856

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 633 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 692

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 693 LIELIENIKDQNESCLIFTQYIGMGNMLKRVLEEKFGQRVLFLNGSVPKKDRDKMIEEFQ 752

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 753 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 806

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 807 HVHKLITTGTLEEKIDEMLERKQSLNNAVITS 838


>gi|49481102|ref|YP_035985.1| SWF/SNF family helicase [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49332658|gb|AAT63304.1| helicase, SWF/SNF family [Bacillus thuringiensis serovar konkukian
            str. 97-27]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|295102130|emb|CBK99675.1| Superfamily II DNA/RNA helicases, SNF2 family [Faecalibacterium
            prausnitzii L2-6]
          Length = 1109

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 22/206 (10%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     +    LQ  +  +     +  ++  ++        +     E    K+ A  
Sbjct: 888  KLYLAAVVDAREKLQAAKPEDKMAVFAVLMRLREICCDPRLIADN---WEGGSAKLDACA 944

Query: 61   VIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++         I++   F S L                             ++ +N G+
Sbjct: 945  ELVSSAVEGGHRILLFSQFTSMLELLAKRLDAEGISHFTLQGSTPKPVRAELVRRFNGGE 1004

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    +I++ +  WW++             R  + G +  V VY
Sbjct: 1005 VSVFLISLRAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRAYRIGQQNPVQVY 1058

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLL 194
             LIAQ+TI+E +++  + K ++ D +
Sbjct: 1059 KLIAQDTIEEKIVELQQAKQSLADTV 1084


>gi|229008128|ref|ZP_04165659.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
 gi|228753134|gb|EEM02641.1| Helicase, SNF2/RAD54 [Bacillus mycoides Rock1-4]
          Length = 867

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  K++     K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      LQK                    +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|156743267|ref|YP_001433396.1| non-specific serine/threonine protein kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156234595|gb|ABU59378.1| Non-specific serine/threonine protein kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1066

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 4    YHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y      L   +  E I           ++  Q+ N     D           K + L  
Sbjct: 854  YRAL---LLGLIDNEGINKARIKVLEGLLRLRQICNHPRLVD---ASFRGSSGKFELLLE 907

Query: 62   IIEKAN--AAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIP 110
             +E  N      ++   F   L  ++          A+  G+T  +     +  N+  +P
Sbjct: 908  TLETLNAEGHKALIFSQFVQMLHLIREALDTRSIRYAYLDGQTHQRQQEVDRFQNDETLP 967

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL    + ++    WW+              R  + G ++ +FVY L
Sbjct: 968  FFLISLKAGGVGLNLTA-ADYVIHVDPWWNPAVEM-----QATDRTHRIGQEKPIFVYKL 1021

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I +N+++E +L   + K  +   L+ A
Sbjct: 1022 ITRNSVEEKILSLQQRKRELVAQLITA 1048


>gi|94272618|ref|ZP_01292159.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93450064|gb|EAT01427.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 596

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 26/210 (12%)

Query: 5   HKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              +R     LQ +  EA         ++ ++  + A        E     +   K+   
Sbjct: 374 ETIRRRAVEVLQEDEGEAAGSRHLKVLAELMRLRRAACHPRLVLGEGA---LMAGKLPLF 430

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
             ++    +N    +V   F + LA +           +         +    +  +  G
Sbjct: 431 AEVLHDIISNRHKALVFSQFVAHLAIVREYLDGQGIGYQYLDGSTPARERKRAVAAFQAG 490

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 491 EGEVFCISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRIGQERPVTI 544

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+ + +I+E +L     K  + + LL+ 
Sbjct: 545 YRLVTKGSIEEKILALHGRKRDLAENLLSG 574


>gi|30019888|ref|NP_831519.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|229127175|ref|ZP_04256172.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
 gi|29895433|gb|AAP08720.1| SWF/SNF family helicase [Bacillus cereus ATCC 14579]
 gi|228656291|gb|EEL12132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-Cer4]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                               +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQDRVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|228945457|ref|ZP_04107809.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
 gi|228814210|gb|EEM60479.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
          Length = 1064

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|163797448|ref|ZP_02191399.1| SWI/SNF family helicase [alpha proteobacterium BAL199]
 gi|159177197|gb|EDP61756.1| SWI/SNF family helicase [alpha proteobacterium BAL199]
          Length = 421

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 4   YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y   +R+    L   +  A        ++  +  +        D++     V   K+ A 
Sbjct: 203 YEALRRQSLDRLAAVDAPAGQRKIQILAEITRLRRACCNPALIDQDA---GVPSGKLAAF 259

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
             +++    N    +V   F + LA             +              +  +  G
Sbjct: 260 LDLVDDLVRNRHRALVFSQFVAHLALVRAALDARGIRYEYLDGSTPAADRERRVAAFQAG 319

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL    + +V    WW+       +E     R  + G +R V +
Sbjct: 320 TADVFLISLRAGGTGLNLTA-ADYVVHLDPWWNPA-----VEDQASDRVHRIGQERPVTI 373

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y LI Q++I+E +L+  R K  +   +L   +
Sbjct: 374 YRLIMQDSIEEQILRLHRDKRDLAADILEGGE 405


>gi|282857036|ref|ZP_06266287.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
 gi|282585197|gb|EFB90514.1| helicase, SNF2/RAD54 family [Pyramidobacter piscolens W5455]
          Length = 1419

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 24/209 (11%)

Query: 4    YHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   ++     +       E  + F   ++ +K  +         +      +   K++A
Sbjct: 1196 YEALRQSAVEAIDAAGNSPEEDKRFAVFAQLMKLRRCCCAVSLVSD-GVGAAIPSSKLEA 1254

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE 106
            L  ++++   +    +V   F   L  +++                   K    +  +  
Sbjct: 1255 LLELVDELRESGHRALVFSQFTDHLRLIERALAERGVPCLYLDGSTPPGKRAELVSSFQS 1314

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+         + G GLNL  G + +V    WW+       +E     R  + G  R V 
Sbjct: 1315 GRGDCFLISLRAGGTGLNLT-GADFVVHMDPWWNPA-----VEDQASDRAYRIGQTRPVT 1368

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY  +A +T++E +++  R K  + + LL
Sbjct: 1369 VYRFVAAHTVEEKIVELHRRKRGLAESLL 1397


>gi|228994365|ref|ZP_04154249.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
 gi|228765382|gb|EEM14052.1| Helicase, SNF2/RAD54 [Bacillus pseudomycoides DSM 12442]
          Length = 867

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  K++     K + 
Sbjct: 644 LYEQLVQDTLQNIEGLTGIERRGFILMMLSKLKQICNHPALYLKEEAPKDIVQRSMKTQT 703

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      LQK                    +    I+++ 
Sbjct: 704 LMDLIENIKDQNESCLIFTQYIGMGNMLQKILEEKFGQRVLFLNGSVPKIERDKMIEQFQ 763

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 764 NGTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 817

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E + + L  K ++   ++ +
Sbjct: 818 HVHKLITTGTLEEKIDEMLERKQSLSSAIITS 849


>gi|218902968|ref|YP_002450802.1| putative helicase [Bacillus cereus AH820]
 gi|228930936|ref|ZP_04093897.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
 gi|229121402|ref|ZP_04250630.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|218535984|gb|ACK88382.1| putative helicase [Bacillus cereus AH820]
 gi|228662045|gb|EEL17657.1| Helicase, SWF/SNF [Bacillus cereus 95/8201]
 gi|228828715|gb|EEM74390.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pondicheriensis
            BGSC 4BA1]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|217959332|ref|YP_002337880.1| putative helicase [Bacillus cereus AH187]
 gi|229138547|ref|ZP_04267132.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
 gi|217067719|gb|ACJ81969.1| putative helicase [Bacillus cereus AH187]
 gi|228644907|gb|EEL01154.1| Helicase, SWF/SNF [Bacillus cereus BDRD-ST26]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|149177854|ref|ZP_01856453.1| Snf2 family protein [Planctomyces maris DSM 8797]
 gi|148843344|gb|EDL57708.1| Snf2 family protein [Planctomyces maris DSM 8797]
          Length = 1110

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 3    QYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--HWKEVHDE 54
             Y + ++          + +G      +     ++  Q A      D  +        D 
Sbjct: 889  LYDELRQHYRDSILGMVESKGLGKTKIHVLEALLRLRQAACHPALLDRGRALDASAKMDV 948

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWN 105
             I  LE +IE+      +V   F S L+ +Q+          +  G+T D+     +   
Sbjct: 949  LIPHLEELIEE--GHKALVFSQFTSMLSIVQEHLDQKNIVYEYLDGQTRDRKERVDRFQT 1006

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +      + G GLNL    + +     WW+       +E   + R  + G  + V
Sbjct: 1007 DKDCGVFLISLKAGGLGLNLTA-ADYVFILDPWWNPA-----VETQAIDRAHRVGQTKRV 1060

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F Y LI +NT++E + +  + K  + D +L  
Sbjct: 1061 FAYKLICRNTVEEKITELQQQKRELADAILEE 1092


>gi|327538183|gb|EGF24865.1| SWF/SNF family helicase [Rhodopirellula baltica WH47]
          Length = 966

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDL-------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y   +     +L         E      + S   +  QLA      +      +    
Sbjct: 740 KLYEDARLAALAELTAGGGAPSHEGRRRIQTLSWLTRLRQLACHPSLVEPS---WKGTSS 796

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           K++    ++E+        +V   F            +     +         +    + 
Sbjct: 797 KLQLFLSLVEELREGDHRALVFSQFVKHLSVVRAALDERGISYQYLDGATPSHERQRRVD 856

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+  L      + G GLNL    + ++    WW+       +E     R  + G +
Sbjct: 857 AFQNGEGDLFLISLKAGGTGLNLTA-ADYVLHLDPWWNPA-----VEDQATDRAHRIGQE 910

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RAV VY L+A+ TI+E +LQ    K  +   +L+    
Sbjct: 911 RAVTVYRLVAERTIEEQILQLHADKRELVAGILDGTDA 948


>gi|30261851|ref|NP_844228.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47527092|ref|YP_018441.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184685|ref|YP_027937.1| helicase [Bacillus anthracis str. Sterne]
 gi|165869343|ref|ZP_02214002.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167633415|ref|ZP_02391740.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167638796|ref|ZP_02397071.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170686032|ref|ZP_02877254.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170707256|ref|ZP_02897711.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177650600|ref|ZP_02933567.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190566481|ref|ZP_03019399.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227815374|ref|YP_002815383.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229599991|ref|YP_002866233.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254683351|ref|ZP_05147212.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254734706|ref|ZP_05192418.1| putative helicase [Bacillus anthracis str. Western North America
            USA6153]
 gi|254741114|ref|ZP_05198802.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254755357|ref|ZP_05207391.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254759895|ref|ZP_05211919.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|30256079|gb|AAP25714.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47502240|gb|AAT30916.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178612|gb|AAT53988.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|164714783|gb|EDR20301.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167513260|gb|EDR88631.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167531453|gb|EDR94131.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170127755|gb|EDS96627.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170669729|gb|EDT20470.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172083744|gb|EDT68804.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190562616|gb|EDV16583.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|227003172|gb|ACP12915.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|229264399|gb|ACQ46036.1| putative helicase [Bacillus anthracis str. A0248]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|32470671|ref|NP_863664.1| helicase [Rhodopirellula baltica SH 1]
 gi|32442816|emb|CAD71334.1| helicase [Rhodopirellula baltica SH 1]
          Length = 1176

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 2    KQYHKFQRELYCDL-------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y   +     +L         E      + S   +  QLA      +      +    
Sbjct: 950  KLYEDARLAALAELTAGGGAPSHEGRRRIQTLSWLTRLRQLACHPSLVEPS---WKGTSS 1006

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
            K++    ++E+        +V   F            +     +         +    + 
Sbjct: 1007 KLQLFLSLVEELREGDHRALVFSQFVKHLSVVRAALDERGISYQYLDGATPSHERQRRVD 1066

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G+  L      + G GLNL    + ++    WW+       +E     R  + G +
Sbjct: 1067 AFQNGEGDLFLISLKAGGTGLNLTA-ADYVLHLDPWWNPA-----VEDQATDRAHRIGQE 1120

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            RAV VY L+A+ TI+E +LQ    K  +   +L+    
Sbjct: 1121 RAVTVYRLVAERTIEEQILQLHADKRELVAGILDGTDA 1158


>gi|228958135|ref|ZP_04119868.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
 gi|228801518|gb|EEM48402.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pakistani str.
            T13001]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|224282308|ref|ZP_03645630.1| helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139453|ref|ZP_07801646.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
 gi|313131963|gb|EFR49580.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 1339

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 53/243 (21%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            K Y   +++L   +  +             ++  +  Q+        E            
Sbjct: 1081 KLYAALEQQLRSVILSQRPADFNTGKIQILAQLTRLRQVCCDPRLIYENADGHASALSAG 1140

Query: 48   ---------------------WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR- 83
                                  K V   K+ A+  ++   +     +++   F S L   
Sbjct: 1141 VQSAAKDPQQSVKQPVKQSKARKTVSSAKLDAIIELVDSCRDAGRKMLIFSQFTSYLDLI 1200

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                                 +    +  +N    P+      +   GLNL  G  ++V 
Sbjct: 1201 AQRLRADGVEYDMITGATPKKRRLELVDRFNADATPVFLISLKAGNTGLNLT-GACVVVH 1259

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW+              R  + G  + V VY ++A++TI+E +L   R+K+ +    
Sbjct: 1260 ADPWWNAAAQD-----QATDRAHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRF 1314

Query: 195  LNA 197
            +++
Sbjct: 1315 VDS 1317


>gi|228984941|ref|ZP_04145110.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
 gi|228774764|gb|EEM23161.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar tochigiensis BGSC
            4Y1]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229155427|ref|ZP_04283536.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
 gi|228627988|gb|EEK84706.1| Helicase, SWF/SNF [Bacillus cereus ATCC 4342]
          Length = 1064

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229589086|ref|YP_002871205.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|229360952|emb|CAY47812.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 897

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 81/212 (38%), Gaps = 23/212 (10%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK-HWKEVHDEK 55
            Y   +    +++  ++  + +           +K  Q+       ++     +     K
Sbjct: 665 VYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDATLPARGSSSGK 724

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           + +L  ++E+       I++   F S L+ ++    +                  ++++ 
Sbjct: 725 LDSLMTMLEELFEEGRRILLFSQFTSMLSLIEVELKKRGVAYALLTGQTRDRRTPVKDFQ 784

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            GK+ +      + G GLNL    + ++ +  WW+        E     R  + G ++ V
Sbjct: 785 SGKLQIFLISLKAGGVGLNLTE-ADTVIHYDPWWNPAT-----ENQATDRAYRIGQEKPV 838

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY +IA+ T++E +    + KS +   +L+ 
Sbjct: 839 FVYKMIARGTVEEKIQHLQKEKSDLAAGVLDG 870


>gi|119714405|ref|YP_921370.1| SNF2-related protein [Nocardioides sp. JS614]
 gi|119535066|gb|ABL79683.1| SNF2-related protein [Nocardioides sp. JS614]
          Length = 903

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 24/221 (10%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKI 56
            Y  F R+    ++  +            +      Q+ N   ++ +          EK+
Sbjct: 674 LYESFVRDTMARIERADPSDPVARRGLVLTLLTGLKQICNHPDHFLKRSGARLSGRSEKV 733

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
             L+ ++         ++V   + +    L+               G  + +    +  +
Sbjct: 734 DLLDELVGTVLAEDGAVLVFTQYVAMARLLEGHLARAGVPHQLLHGGTPVREREAMVARF 793

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+ P+      + G GLNL    + +V    WW+       +E     R  + G  + 
Sbjct: 794 QAGETPVFLLSLKAGGTGLNLTR-ADHVVHVDRWWNPA-----VEEQATDRAYRIGQTKP 847

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V+ +I + T++E V + L  K  + D +L+  +     +
Sbjct: 848 VQVHRMITRGTVEEKVAELLTRKRALADAVLSRGEAALTEL 888


>gi|325570841|ref|ZP_08146524.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156351|gb|EGC68533.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
          Length = 1054

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 26/221 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  + R++  ++   +  +      +  +   +  Q+      + E+    E    K+
Sbjct: 828  KIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQICCDPRLFVEDY---EGSSGKL 884

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            + ++ ++   K N   +++   F S L+ ++                         +  +
Sbjct: 885  EQVKDLLLAAKENGRRVLLFSQFTSMLSIIEEELAQEGFESFYLRGSTPPQDRLTMVNAF 944

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K  
Sbjct: 945  NSGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRIGQKNV 998

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V V+ +IA+ TI+E +    + K  +   ++   + +   +
Sbjct: 999  VEVWRMIAEGTIEERMDALQQEKRELFQKVIQGNETQLQQM 1039


>gi|311063653|ref|YP_003970378.1| helicase [Bifidobacterium bifidum PRL2010]
 gi|310865972|gb|ADP35341.1| Helicase [Bifidobacterium bifidum PRL2010]
          Length = 1339

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 73/243 (30%), Gaps = 53/243 (21%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            K Y   +++L   +        N       ++  +  Q+        E            
Sbjct: 1081 KLYAALEQQLRSVILRQRPADFNTGKIQILAQLTRLRQVCCDPRLIYENADGHASALSAG 1140

Query: 48   ---------------------WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR- 83
                                  K V   K+ A+  ++   +     +++   F S L   
Sbjct: 1141 VQSAAKDPQQSVKQPVKQSKARKTVSSAKLDAIIELVDSCRDAGRKMLIFSQFTSYLDLI 1200

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                                 +    +  +N    P+      +   GLNL  G  ++V 
Sbjct: 1201 AQRLRADGVEYDMITGATPKKRRLELVDRFNADATPVFLISLKAGNTGLNLT-GACVVVH 1259

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW+              R  + G  + V VY ++A++TI+E +L   R+K+ +    
Sbjct: 1260 ADPWWNAAAQD-----QATDRAHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRF 1314

Query: 195  LNA 197
            +++
Sbjct: 1315 VDS 1317


>gi|310286756|ref|YP_003938014.1| helicase [Bifidobacterium bifidum S17]
 gi|309250692|gb|ADO52440.1| helicase [Bifidobacterium bifidum S17]
          Length = 1339

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 73/243 (30%), Gaps = 53/243 (21%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            K Y   +++L   +        N       ++  +  Q+        E            
Sbjct: 1081 KLYAALEQQLRSVILRQRPADFNTGKIQILAQLTRLRQVCCDPRLIYENADGHASALSAG 1140

Query: 48   ---------------------WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR- 83
                                  K V   K+ A+  ++   +     +++   F S L   
Sbjct: 1141 VQSAAKDPQQSVKQPVKQSKARKTVSSAKLDAIIELVDSCRDAGRKMLIFSQFTSYLDLI 1200

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                                 +    +  +N    P+      +   GLNL  G  ++V 
Sbjct: 1201 AQRLRADGVEYDMITGATPKKRRLELVDRFNADATPVFLISLKAGNTGLNLT-GACVVVH 1259

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW+              R  + G  + V VY ++A++TI+E +L   R+K+ +    
Sbjct: 1260 ADPWWNAAAQD-----QATDRAHRIGQTQDVNVYQIVAKDTIEERILNLQRSKTDLAQRF 1314

Query: 195  LNA 197
            +++
Sbjct: 1315 VDS 1317


>gi|257438160|ref|ZP_05613915.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199491|gb|EEU97775.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 1119

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     +    L   +  +     +  ++  ++        +          K+ A  
Sbjct: 899  KLYLAAVVDAREKLRAAKPEDKMAVFAVLMRLREICCDPRLIADN---WTGGSAKLDACI 955

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             ++     +   I++   F S L                             ++ +N G+
Sbjct: 956  ELVTSAVESGHRILLFSQFTSMLELLAKRLDAEGVSHFTLQGSTPKPVRAELVRRFNGGE 1015

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    +I++ +  WW++             R  + G +  V VY
Sbjct: 1016 ASVFLISLRAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRAYRIGQQNPVQVY 1069

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             LI Q+TI+E +++  + K  + + +  +     + +
Sbjct: 1070 KLITQDTIEEKIVELQQAKQDLAETVTGSADGAILRM 1106


>gi|229160810|ref|ZP_04288801.1| Helicase, SWF/SNF [Bacillus cereus R309803]
 gi|228622658|gb|EEK79493.1| Helicase, SWF/SNF [Bacillus cereus R309803]
          Length = 1068

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1024 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1053


>gi|54309827|ref|YP_130847.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
 gi|46914265|emb|CAG21045.1| hypothetical protein PBPRA2667 [Photobacterium profundum SS9]
          Length = 1298

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 22/207 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y   ++E     +          +   +  Q+   +     E         K+     +
Sbjct: 1083 AYEAIRKESVAVAKSGKGM-VEVLACLTRLRQVCCDSRLVFSEMDQ---PSSKLNEALQL 1138

Query: 63   IEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +++       I+V   F + L                     +  +    I  +  GK  
Sbjct: 1139 VKEAREGQHRILVFSQFVTLLKMFADQLEGDGINYSYLDGKSSSRQRKQAIDAFTSGKKE 1198

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    + ++    WW+       +E     R  + G  + V VY L
Sbjct: 1199 VFLISLKAGGTGLNLTE-ADTVIHLDPWWNPA-----VEDQASDRAYRMGQTKPVTVYRL 1252

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A NTI+E ++   ++K  + D +L+ 
Sbjct: 1253 VATNTIEEKIVLLHQSKRDLADKVLSG 1279


>gi|324325873|gb|ADY21133.1| helicase, putative [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 1064

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|229196057|ref|ZP_04322809.1| Helicase, SWF/SNF [Bacillus cereus m1293]
 gi|228587439|gb|EEK45505.1| Helicase, SWF/SNF [Bacillus cereus m1293]
          Length = 1064

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|134301077|ref|YP_001114573.1| SNF2 helicase associated domain-containing protein [Desulfotomaculum
            reducens MI-1]
 gi|134053777|gb|ABO51748.1| SNF2 helicase associated domain protein [Desulfotomaculum reducens
            MI-1]
          Length = 1084

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 5    HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             K ++E      ++G         +   +  QL      + E    +     K++ L  I
Sbjct: 868  EKIRQETKDALQIEGFEKSRIKILAGLTRLRQLCCHPSLFLENYSGQ---SGKLEQLMEI 924

Query: 63   IEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            IE    N   ++V   F S L  +                           Q +N G+  
Sbjct: 925  IENTLENKRRLLVFSQFASMLGIICEELDRLNKSYFYLDGQTPAKDRVEMTQRFNNGEKD 984

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G GLNL  G + ++ + LWW+       IE     R  + G K  V V  L
Sbjct: 985  LFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRMGQKNCVQVIKL 1038

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            I + TI+E + +  + K  + + ++
Sbjct: 1039 ITKGTIEEKIYEMQQQKKELIEQVI 1063


>gi|225863710|ref|YP_002749088.1| putative helicase [Bacillus cereus 03BB102]
 gi|225786052|gb|ACO26269.1| putative helicase [Bacillus cereus 03BB102]
          Length = 1064

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|218753823|ref|ZP_03532619.1| helicase helZ [Mycobacterium tuberculosis GM 1503]
 gi|289762264|ref|ZP_06521642.1| helicase [Mycobacterium tuberculosis GM 1503]
 gi|289709770|gb|EFD73786.1| helicase [Mycobacterium tuberculosis GM 1503]
          Length = 559

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 326 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 385

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEW 104
            I+E+       ++    F                   R       G    +    +  +
Sbjct: 386 EILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARF 445

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G   P+      + G GLNL    N +V    WW+       +E     R  + G +R
Sbjct: 446 QSGDGPPIFLLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQRR 499

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V V   I   T++E + + +  K  + DL++
Sbjct: 500 TVQVRKFICTGTLEEKIDEMIEEKKALADLVV 531


>gi|52143616|ref|YP_083212.1| SWF/SNF family helicase [Bacillus cereus E33L]
 gi|51977085|gb|AAU18635.1| helicase, SWF/SNF family [Bacillus cereus E33L]
          Length = 1064

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|301053386|ref|YP_003791597.1| helicase, SWF/SNF family [Bacillus anthracis CI]
 gi|300375555|gb|ADK04459.1| helicase, SWF/SNF family [Bacillus cereus biovar anthracis str. CI]
          Length = 1064

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|261408135|ref|YP_003244376.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261284598|gb|ACX66569.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 1111

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K ++E    L   G         +   +  Q+      + E     E    K
Sbjct: 886  KLYTAYLAKLRQETLKHLAQDGFQKNRIRILAGITRLRQICCHPALFVEGY---EGGSAK 942

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            ++ L   IE+       ++V   F   L                        +     + 
Sbjct: 943  LEQLLETIEECRLAGRRMLVFSQFTGMLNLIAGELGYRGIPFFYLDGQTPGSERVELCER 1002

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  +      + G GLNL  G + ++ + LWW+    Q       + R  + G K+
Sbjct: 1003 FNEGEREVFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAMDRAHRIGQKK 1056

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   ++Q+TI++ ++   + K  + + L+ 
Sbjct: 1057 VVQVIRFVSQDTIEDKMVALQQKKKDLIEELVQ 1089


>gi|149200479|ref|ZP_01877493.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
 gi|149136441|gb|EDM24880.1| hypothetical protein LNTAR_13447 [Lentisphaera araneosa HTCC2155]
          Length = 1021

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 2    KQYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y         D+  +         +  S   +  Q  +      EE   KE+   K +
Sbjct: 799  ELYKNIAENFLQDILQDQTAFSKRRLDILSLITRLRQTCSHPALLPEEFKAKEIESSKFQ 858

Query: 58   ALEVIIEKANA--APIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWN-E 106
              + ++E+        +V   F S L+ +++              +  K    + ++N +
Sbjct: 859  LFQELVEEIRDSSHRALVFSQFTSMLSLMREWLDEQGIKYCYLDGSTKKRQDLVDQFNED 918

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I        + G GLNL  G + ++ +  WW+      M+      R  + G  R V 
Sbjct: 919  DSIQFFLLSLKAGGTGLNLT-GADTVIHYDNWWNP-----MVVNQASDRAHRIGQTRNVN 972

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  L+AQNTI++ ++Q  +TK  + D L+  
Sbjct: 973  IIKLVAQNTIEDKIIQLQKTKEKLFDQLVEG 1003


>gi|158320075|ref|YP_001512582.1| non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
 gi|158140274|gb|ABW18586.1| Non-specific serine/threonine protein kinase [Alkaliphilus oremlandii
            OhILAs]
          Length = 1085

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + +E+   L+ E              +   +  Q+      + E          K
Sbjct: 861  KIYVGYLKEIQGSLEEEIREYGFERSQIKILAALTRLRQICCHPAMFIENYTGT---SGK 917

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L+ IIE        I++   F S L                      +++    + +
Sbjct: 918  FELLQEIIENAIEGKHRILLFSQFTSMLSIIREMLESLNISYYYLDGSTPMEERGKLVSD 977

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   +      + G GLNL  G ++++ F  WW+       +E     R  + G + 
Sbjct: 978  FNKGNSDVFLISLKAGGTGLNLT-GADMVIHFDPWWNPA-----VEEQATDRAYRIGQQN 1031

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +V V  LI + TI+E + +    K  + D ++
Sbjct: 1032 SVHVMKLITKGTIEEKIAKLQERKRELIDAVI 1063


>gi|17233188|ref|NP_490278.1| hypothetical protein all7172 [Nostoc sp. PCC 7120]
 gi|17135710|dbj|BAB78256.1| all7172 [Nostoc sp. PCC 7120]
          Length = 1055

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    R++   LQ            S  +K  Q+ N    +  +   +      K+  L
Sbjct: 823  LYEVVVRDVEEKLQEAEGIQRKGLILSTLMKLKQICNHPRQFLQDNSEFLPERSHKLSRL 882

Query: 60   EVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++++  +    +++   F             +L         G +  +    I ++  
Sbjct: 883  VEMVDEAISEGESLLIFSQFTEVCEQIEKYLKHNLHCNTYYLHGGTSRQRREQMISDFQN 942

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +      + G G+ L    N +  F  WW+       +E     R  + G K+ 
Sbjct: 943  PDTEASVFVLSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQKKN 996

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  +A  T++E + Q +  K  +   ++ + +
Sbjct: 997  VFVHKFVALGTLEERIDQMIEDKKKLSSAVVGSDE 1031


>gi|307149654|ref|YP_003891024.1| SNF2-like protein [Cyanothece sp. PCC 7822]
 gi|306986783|gb|ADN18659.1| SNF2-related protein [Cyanothece sp. PCC 7822]
          Length = 1048

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +++   ++            S  +K  Q+ N    +  +   +      K++ L
Sbjct: 817  LYEAVVKDVMEQIEETEGIQRKGLILSTLMKLKQICNHPRQFLQDNSEFTPERSHKLERL 876

Query: 60   EVIIEKA--NAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++E+       +++   F                        G   +K    I  + +
Sbjct: 877  GEMVEEVIAEGESLLIFSQFTEIGEALQHYIKHTRHYNTYYLHGGTPRNKREQMIASFQD 936

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+       +E     R  + G ++ 
Sbjct: 937  PETDPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQQKN 990

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  +   T++E + Q +  K  +   ++ + +
Sbjct: 991  VFVHKFVTLGTLEERIDQMIEDKKKVASSIVGSDE 1025


>gi|254723933|ref|ZP_05185719.1| putative helicase [Bacillus anthracis str. A1055]
          Length = 1064

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            A  TI+E + +   +K  +   ++ 
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIE 1044


>gi|150391520|ref|YP_001321569.1| non-specific serine/threonine protein kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951382|gb|ABR49910.1| Non-specific serine/threonine protein kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 883

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 22/217 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   ++   L+            S  +K  Q+ N    Y   + +K  H  K + L 
Sbjct: 655 LYKQLIEQISEKLKVAEGIERKGLVLSSIMKFKQICNHPDQYMGREDYKSEHSGKFEQLR 714

Query: 61  VI--IEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I  I       +++   F               ++       G  + K    ++++N E
Sbjct: 715 EICQIIHEKRERVLIFTQFREMTEPLSDFLSGIFSKEGFVLHGGTPVKKRNEMVEQFNGE 774

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP +     + G GLNL    N ++ F  WW+       +E     R  + G  + V 
Sbjct: 775 HYIPYMVLSLKAGGVGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAFRIGQTKNVM 828

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+  + + TI+E +   +  K  +   +L+A  ++ I
Sbjct: 829 VHKFVTKGTIEEKIDAIIEEKQKLSGDILSAGGEQWI 865


>gi|317473515|ref|ZP_07932807.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899026|gb|EFV21048.1| SNF2 family domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1116

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  +             S+  +  QL        ++   K V  + +
Sbjct: 895  KLYDAHVKRMQLMLDKQSEEEFKSSKIQILSELTRLRQLCCSPELVFDQYTGKSVKSD-L 953

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
                +    +    I++   F S ++ L+                   +K    ++++N 
Sbjct: 954  CIDLIKNAVSGGHKILLFSQFTSMISILEERLQAEKISFYTLIGSVNKEKRARMVEDFNN 1013

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    +I++ +  WW+L      ++     R  + G +  V 
Sbjct: 1014 DDTSVFCISLKAGGTGLNLTS-ADIVIHYDPWWNLA-----VQNQATDRAHRIGQENVVM 1067

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + TI++ +++    K  + D +L  
Sbjct: 1068 VYRLIVEGTIEDNIVKLQEKKKELADQILGG 1098


>gi|222095476|ref|YP_002529536.1| helicase, putative [Bacillus cereus Q1]
 gi|221239534|gb|ACM12244.1| helicase, putative [Bacillus cereus Q1]
          Length = 1064

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|310640034|ref|YP_003944792.1| snf2-like protein [Paenibacillus polymyxa SC2]
 gi|309244984|gb|ADO54551.1| SNF2-like protein [Paenibacillus polymyxa SC2]
          Length = 1041

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
             Y     +L   L G+   A          K  Q+ +        +       +  K++ 
Sbjct: 809  LYRGVVDQLLGTLDGQVGMARKGLVLSSLTKLKQICDHPGLIIPGRADSSKTENSGKMER 868

Query: 59   LEVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
            L  ++   + N    ++   + S            L         G    +    +  + 
Sbjct: 869  LLELVETIRENNESALIFTQYVSMGELLVSRLAKILGEEPYFLHGGLAKTRRDEMVHNFQ 928

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +GK P +      + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 929  QGKGPNIFVLSLRAGGVGLNLTR-ASHVIHYDRWWNPA-----VENQATDRVFRIGQSRN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ LI Q T++E + + + +K  + + ++ + +
Sbjct: 983  VQVHKLICQGTLEERIDELIESKKALSEQVVGSGE 1017


>gi|56964329|ref|YP_176060.1| DNA/RNA helicase [Bacillus clausii KSM-K16]
 gi|56910572|dbj|BAD65099.1| SNF2 family DNA/RNA helicase [Bacillus clausii KSM-K16]
          Length = 997

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 24/211 (11%)

Query: 3   QYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y        E    +     +A        +  Q+ N    + ++         K  A 
Sbjct: 767 LYQAVVEDVSERLATVAHLERKAM-ILRAITRMKQICNHPAQFYKDGDIAGHQSGKWDAF 825

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN- 105
             I+    +    +++   +      +                 G +  +    I+++  
Sbjct: 826 LDIVASIFSKGESVLIFTQYKEMGKLISHELQARYEVPVPFLHGGLSRSQRRMAIEQFQH 885

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +           + G GLNL      ++ +  WW+       +E     R  + G  + V
Sbjct: 886 DPHAAAFVLSLKAGGVGLNLTK-ATNVIHYDRWWNPA-----VENQATDRAYRIGQTKPV 939

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY L+   T++E + Q +  K  + + +L 
Sbjct: 940 QVYKLLTAGTVEERIDQLINGKKALAEGVLQ 970


>gi|325690428|gb|EGD32431.1| SNF2 domain protein [Streptococcus sanguinis SK115]
          Length = 450

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/201 (40%), Positives = 128/201 (63%), Gaps = 7/201 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y +F+ E+   ++G+ ++A NSAS + K LQ++NG V YDE +    +HD+K+ ALE
Sbjct: 249 LAVYKEFKTEMMVSIKGQVLDAVNSASLSNKLLQMSNGMV-YDENRKAVLLHDQKLVALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY F  DL R+++ F + R   +    I++WN+GKI L   HPAS G
Sbjct: 308 EMVESMNNRPLLVAYWFQHDLKRIKERFSEARV-IQSNQDIEDWNKGKIVLGLVHPASSG 366

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+ + +F L W LE +QQ+  R+      + G K  V V+++I ++T+DE V
Sbjct: 367 HGLNLQAGGHTICWFGLTWSLELYQQLNARLW-----RQGQKETVVVHHIITKSTMDEQV 421

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
           ++RL+ K   Q  L++A+K E
Sbjct: 422 MKRLKEKDISQQSLIDAVKYE 442


>gi|160944098|ref|ZP_02091328.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444774|gb|EDP21778.1| hypothetical protein FAEPRAM212_01600 [Faecalibacterium prausnitzii
           M21/2]
          Length = 562

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 88/211 (41%), Gaps = 21/211 (9%)

Query: 2   KQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + +R  + +L   + I A    +K ++ +QL  G    D+    ++V+  K+ ALE
Sbjct: 353 KLYEQLRRSSFAELDSGDSITATTVLTKMLRLMQLTGGFTQTDDGTRPQQVNTAKLDALE 412

Query: 61  VIIEKA---NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-E 106
            I++       + +++   F +++A              +        +    + ++   
Sbjct: 413 DILDDYVLETGSKLVIFARFRAEIAAIENALRKKGIPYGSIYGDVPQAERGKIVDDFQQN 472

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +  A   + G G+ L    ++ VF+S+ ++   +        + R  + G    V 
Sbjct: 473 PEAKVFVAQIQTAGLGITLHA-ASMAVFYSIDYNYANY-----AQALARIHRIGQHNPVT 526

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +L+ +++ID+ VL  L  K  I   ++++
Sbjct: 527 YIHLLVEDSIDDKVLAALENKEDIAKSIVDS 557


>gi|206975015|ref|ZP_03235930.1| putative helicase [Bacillus cereus H3081.97]
 gi|206747034|gb|EDZ58426.1| putative helicase [Bacillus cereus H3081.97]
          Length = 1064

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|262199842|ref|YP_003271051.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262083189|gb|ACY19158.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 1121

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 24/214 (11%)

Query: 1    MKQYHKFQ----RELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-HD 53
            +K Y        REL   L+     +   +  +      Q+                   
Sbjct: 893  VKLYRDAVESRGRELLAALRDPEQPVPYMHVFALLTLLKQICCHPALVAGTPAAYGDYRS 952

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQ 102
            +K +  + ++ +   +   ++V   F   L   ++             GRT  +     +
Sbjct: 953  DKWELAKELVRESLDSGQKVVVYSQFLGMLEIFERHLRALGIGYAKLTGRTRKRGEVVAR 1012

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              ++ +  +  A   + G G++L    ++++ +  WW+        E     R  + G  
Sbjct: 1013 FQDDPECRVFLASLTAGGVGIDLVA-ASVVLHYDRWWNAAR-----EDQATDRVHRMGQT 1066

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V V  L+ + T++E +   +  K  + + ++ 
Sbjct: 1067 RGVQVIKLVTEGTLEEKIAALIAKKRQLMERVVQ 1100


>gi|228914427|ref|ZP_04078038.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
 gi|228845210|gb|EEM90250.1| Helicase, SWF/SNF [Bacillus thuringiensis serovar pulsiensis BGSC
            4CC1]
          Length = 1064

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+      + ++    +    K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDY---QGSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +    K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQEGKKNLIAEVIEPGEEK 1049


>gi|319650819|ref|ZP_08004956.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
 gi|317397417|gb|EFV78118.1| hypothetical protein HMPREF1013_01562 [Bacillus sp. 2_A_57_CT2]
          Length = 939

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y +  ++ +  ++                +  QL N    Y  +E+         K++ 
Sbjct: 715 LYEQLVQDTFAQIEKLSGFERKGLILQLLSRLKQLCNHPALYLKEEKPKHVLERSVKLEK 774

Query: 59  LEVII--EKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWN 105
           L  ++          ++   +                             +    I  + 
Sbjct: 775 LSELVSAVHEQGESCLIFTQYIEMGNMIARLLKKQFGFDVPFLNGSVPKQERDNMISRFQ 834

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + + P+      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 835 DHEFPVFLLSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 888

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +IA  T++E +   L  K ++ D ++ +
Sbjct: 889 HVHKMIATGTLEEKIDAMLEKKQSLNDQIITS 920


>gi|323340857|ref|ZP_08081108.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
 gi|323091708|gb|EFZ34329.1| SWF/SNF family helicase [Lactobacillus ruminis ATCC 25644]
          Length = 975

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 26/212 (12%)

Query: 3   QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y     EL  +L  +             +K  K  Q+         +   +     K  
Sbjct: 756 LYQAMVNELRTELSQKSADEFKQSKIEILAKLTKIRQICCDPSLVYSDYDGE---SGKTD 812

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
               +IE   +    IIV   F S L+ L+                   ++    ++E+N
Sbjct: 813 NCMELIESALSGGHRIIVFSQFVSMLSILEKKLKQRKIEFYKIVGETPKEERFKMVEEFN 872

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  +P+      + G GLNL  G ++++ +  WW+     +  +     R  + G  + V
Sbjct: 873 QNDVPIFLISLKAGGTGLNL-VGADVIIHYDPWWN-----EAAQNQATDRAHRIGQTKNV 926

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI ++TI+E +L+    KS + D +L+ 
Sbjct: 927 LVYKLIVKDTIEEKILKMQEQKSKLADDILSG 958


>gi|229029537|ref|ZP_04185617.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
 gi|228731736|gb|EEL82638.1| Helicase, SWF/SNF [Bacillus cereus AH1271]
          Length = 1064

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCDRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|329903743|ref|ZP_08273604.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548223|gb|EGF32923.1| DNA helicase, SNF2/RAD54 family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 824

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 20/208 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R      +G            +K  Q+               +   K++ L  ++ 
Sbjct: 607 EQVRR--VLARKGFRSGQITILDALLKLRQVCCDPYLLKGPAMVPAMERAKLELLRDLLP 664

Query: 65  --KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL 112
              A    ++V   F   LA +Q                  + +    +  + E ++P+L
Sbjct: 665 GLVAEGRRMLVFSQFTELLALVQTELDALDLPWLALTGATPVGQRAAIVAAFQERQVPIL 724

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + ++    WW+       +E     R  + G  + V VY LI 
Sbjct: 725 LISLKAGGVGLNLTA-ADTVIHLDPWWNPA-----VEEQATARAHRIGQTQTVLVYKLIV 778

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + +I+E +L     K+ + D ++ +   
Sbjct: 779 EGSIEERILALQARKAALADGVIGSDAA 806


>gi|323705524|ref|ZP_08117098.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535001|gb|EGB24778.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1065

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y  +      +++ E              +   +  Q+      + E          K
Sbjct: 842  ELYMAYLENAKTEIEEEIRNKGFERSQIKIITALTRLRQICCHPSMFVENYKGT---SGK 898

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++ L  +I++   +    ++   F + L  ++    + +             +    ++ 
Sbjct: 899  MELLMELIQELKESGHRALIFSQFTTALKLIEDNLKKEKISYLYLDGDTKTKERGELVKA 958

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G   +      + G GLNL  G + ++ F  WW+       IE     R  + G   
Sbjct: 959  FNKGDSDVFLISLKAGGTGLNL-IGADTVIHFDPWWNPA-----IEDQATDRAHRIGQVN 1012

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI+E +++    K  + + ++N
Sbjct: 1013 TVQVIKLITQGTIEEKIVKLQEKKKEMINSVIN 1045


>gi|294499255|ref|YP_003562955.1| SNF2 helicase family protein [Bacillus megaterium QM B1551]
 gi|294349192|gb|ADE69521.1| SNF2 helicase family protein [Bacillus megaterium QM B1551]
          Length = 1068

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 23/209 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y  +  +L   L GE+         +   +  Q+      + E     E +  K++ L
Sbjct: 849  ELYVGYLEQLKSSLAGEDFNKNRMKILAGLTRLRQICCHPSLFVENY---EGYSSKLEQL 905

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
              I   A  N   +++   F S L  +                     +       +N G
Sbjct: 906  LEITRSAVANGKRLLIFSQFTSMLHIIREELQKDNLSYFYLDGQTPSKERVEMADRFNNG 965

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V V
Sbjct: 966  EQDIFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVVQV 1019

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              LI+Q TI+E +    + K  + + ++ 
Sbjct: 1020 IKLISQGTIEEKIYGLQQKKKELIEQVIQ 1048


>gi|262371025|ref|ZP_06064348.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
 gi|262314101|gb|EEY95145.1| helicase superfamily protein II [Acinetobacter johnsonii SH046]
          Length = 1115

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +  +   +      +G            +K  Q+         +     + +  
Sbjct: 889  KLYEAVRATMQASIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKIGQANSA 948

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEW 104
            K++ L  ++         I++   F S L  +++                 K    I  +
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQHLHYAEIGYVKLTGKTKKRDEVITAF 1008

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + 
Sbjct: 1009 QSGQVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQASDRAWRIGQNKP 1062

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFVY LI   +I+E ++   + K+ +   +L+
Sbjct: 1063 VFVYKLITNKSIEEKIIALQQNKAELAHSILS 1094


>gi|91204322|emb|CAJ71975.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
          Length = 1383

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 74/210 (35%), Gaps = 25/210 (11%)

Query: 4    YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +++   +++    G+        ++ +K  +    +           +   KI+  
Sbjct: 1164 YEALRQKAIDNIESFDFGKGEGYLRVLAEIMKLRRACCHSRLVVPGHS---LESSKIRLF 1220

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
              ++++   N    +V   F   L              +       + +   ++  +  G
Sbjct: 1221 GEVVQELMENNHKALVFSQFVDYLAIIREYVEGLNISYQYLDGSTPMKERKRSVDAFQSG 1280

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  L      + G GLNL    + ++    WW+       +E     R  + G KR V +
Sbjct: 1281 EGELFLISLKAGGLGLNLTA-ADYVIHMDPWWNPA-----VEDQASDRAHRIGQKRPVTI 1334

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+ + TI+E ++   + K  + D LL  
Sbjct: 1335 YRLVTKGTIEEKIVNLHQHKRELADSLLEG 1364


>gi|188532517|ref|YP_001906314.1| Putative helicase [Erwinia tasmaniensis Et1/99]
 gi|188027559|emb|CAO95406.1| Putative helicase [Erwinia tasmaniensis Et1/99]
          Length = 890

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 703 RQICCDPRLLSDPRAEKVRHSAKLALLREMLRDLLAEDRRILIFSQFTTMLTIIAGELQK 762

Query: 91  GRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                             ++ + +G++P+      + G GLNL    + ++ +  WW+  
Sbjct: 763 AHIPFVTLTGSTRDRNEPVRRFQQGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA 821

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 E     R  + G  + VFVY LIA +TI+E ++   + K+ + + +L+ 
Sbjct: 822 A-----ENQATDRAYRLGQDKPVFVYKLIAADTIEEKIVALQQQKADLAEEILSD 871


>gi|166363078|ref|YP_001655351.1| putative SNF2 helicase [Microcystis aeruginosa NIES-843]
 gi|166085451|dbj|BAG00159.1| putative SNF2 helicase [Microcystis aeruginosa NIES-843]
          Length = 1040

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +E+   L+            S  ++  Q+ N    +  +   +      K++ L
Sbjct: 809  LYEVVIKEVEKQLEEAEGIKRKGLILSTLMRLKQICNHPRQFLQDNSAFTPERSHKLERL 868

Query: 60   EVIIEKA--NAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++E+       +++   F                        G +  K    I+E+  
Sbjct: 869  GEMLEEVILEGDSLLIFTQFTEIGDSLQKYLKQTFRYNTYYLHGGTSQPKREQMIEEFQH 928

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+       +E     R  + G ++ 
Sbjct: 929  PETEPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VENQATDRAFRIGQQKN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFV+  +   T++E + + +  K  + + +++
Sbjct: 983  VFVHKFVTLGTLEERIDEMIEEKKKVANAIVS 1014


>gi|251797236|ref|YP_003011967.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247544862|gb|ACT01881.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 1026

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 41/238 (17%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
             Y +  +EL  +++            S   +  QL N  V   +E               
Sbjct: 778  LYEQTVKELMDEVKKLEGIQRKGAILSALTRLKQLCNHPVLLTKEVVPVPEDEREEAAES 837

Query: 53   ------DEKIKALEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRT 93
                    K++ L  ++++        ++   +             +L         G +
Sbjct: 838  AMLISRSAKLERLLDLVKELREEGERCLIFTQYIGMGEMLQRVLGRELGEPVLYLHGGSS 897

Query: 94   LDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   I+++   ++P      +      + G GLNL    N +  F  WW+       
Sbjct: 898  KTARDRMIEQFQSRELPPAEQPNVFILSIKAGGVGLNLTA-ANHVFHFDRWWNPA----- 951

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +E     R  + G  R V V+  I+  T++E + + L +K  + D ++ + +     +
Sbjct: 952  VENQATDRAYRMGQTRDVQVHKFISLGTLEERIDEMLESKQQLSDDVITSSEGWITEL 1009


>gi|148243480|ref|YP_001228637.1| SNF2 family DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147851790|emb|CAK29284.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp.
           RCC307]
          Length = 1016

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 26/219 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY---DEEKHWKEVHDEKI 56
           K Y K        +Q   +   +        K  Q+ N        +E          K+
Sbjct: 784 KLYRKTVDNTLEAIQRAPLGQRHGQVLGLLTKLKQICNHPALLLGEEEVGTDFASRSAKL 843

Query: 57  KALEVIIEK--ANAAPIIVAYHF--------NSDLARLQK---AFPQGRTLDKDPCTIQE 103
           + LE I+E+        ++   F             R ++       G + ++    +  
Sbjct: 844 QRLEEILEEVMEAGDRALLFTQFASWGHLLKTHLQQRWRQEVPFLHGGSSKNERQAMVDR 903

Query: 104 WNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +      L      + G GLNL    + +     WW+       +E     R  + G 
Sbjct: 904 FQQDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQ 957

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V V+  I   +++E + + ++ K+++   ++ + ++
Sbjct: 958 TQRVLVHKFITTGSLEEKIDRMIQEKASLAADIVGSGEE 996


>gi|315639730|ref|ZP_07894869.1| Snf2 family protein [Enterococcus italicus DSM 15952]
 gi|315484507|gb|EFU74964.1| Snf2 family protein [Enterococcus italicus DSM 15952]
          Length = 1055

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 24/215 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E    +          +  +   +  Q+      + +E    +    K++ ++ +
Sbjct: 837  RQMQEE-ISQMDSSTFKKNRISILAGLTRLRQICCDPRLFVDEY---QGGSGKLEQVKDL 892

Query: 63   I--EKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K N   +++   F S L+ +                          +  +NEG+  
Sbjct: 893  LLAAKENKRRVLLFSQFTSMLSLIADELDEMGLSHFYLRGSTPPKDRIEMVDAFNEGEAD 952

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G N ++ + LWW+       +E     R  + G K+ V ++ +
Sbjct: 953  VFLISLKAGGTGLNLT-GANTVILYDLWWNPA-----VEEQAAGRAHRMGQKQVVEIWRM 1006

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I++ TI+E +      K  +   ++   + +   +
Sbjct: 1007 ISEGTIEERMDDLQNEKRELFQKVIQGNEAQLQQM 1041


>gi|304315749|ref|YP_003850894.1| SNF2-related protein [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
 gi|302777251|gb|ADL67810.1| SNF2-related protein [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
          Length = 1065

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y  +      +++ E              +   +  Q+      + E          K
Sbjct: 842  ELYMAYLENAKTEIEEEIRNKGFERSQIKIITALTRLRQICCHPSMFVENYKGT---SGK 898

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++ L  +I++   +    ++   F + L  ++    + +             +    ++ 
Sbjct: 899  MELLMELIQELKESGHRALIFSQFTTALKLIEDNLKKEKISYLYLDGDTKTKERGELVKA 958

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG   +      + G GLNL  G + ++ F  WW+       IE     R  + G   
Sbjct: 959  FNEGDSDVFLISLKAGGTGLNL-VGADTVIHFDPWWNPA-----IEDQATDRAHRIGQVN 1012

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LI Q TI+E +++    K  + + ++N
Sbjct: 1013 TVQVIKLITQGTIEEKIVKLQERKKEMINSVIN 1045


>gi|307700797|ref|ZP_07637822.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307613792|gb|EFN93036.1| SNF2 family N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 970

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y K+      + +G   +  N  +   +  QL+  A   +           KI  L  
Sbjct: 754 ELYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPA---VPEDGAKIDYLVD 810

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +    A    I+V   F S LA L+          A+  G T ++    +  +  G   
Sbjct: 811 ALPDLAAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSAR 869

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G GLNL    + +     WW+ +     +E   + R  + G  R V VY L
Sbjct: 870 VFLISLKSGGFGLNLTA-ADYVFLCDPWWNPQ-----VESQAIDRAHRIGQTRPVNVYRL 923

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
           +A+NTI++ VL     K  + D +L  +  +E  
Sbjct: 924 VAKNTIEQRVLAMQAQKRELFDQVLRGSENREVT 957


>gi|306818666|ref|ZP_07452388.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
 gi|304648352|gb|EFM45655.1| SNF2 family protein [Mobiluncus mulieris ATCC 35239]
          Length = 970

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y K+      + +G   +  N  +   +  QL+  A   +           KI  L  
Sbjct: 754 ELYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPA---VPEDGAKIDYLVD 810

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +    A    I+V   F S LA L+          A+  G T ++    +  +  G   
Sbjct: 811 ALPDLAAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSAR 869

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G GLNL    + +     WW+ +     +E   + R  + G  R V VY L
Sbjct: 870 VFLISLKSGGFGLNLTA-ADYVFLCDPWWNPQ-----VESQAIDRAHRIGQTRPVNVYRL 923

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
           +A+NTI++ VL     K  + D +L  +  +E  
Sbjct: 924 VAKNTIEQRVLAMQAQKRELFDQVLRGSENREVT 957


>gi|269976365|ref|ZP_06183357.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
 gi|269935436|gb|EEZ91978.1| helicase/SNF2 family domain-containing protein [Mobiluncus mulieris
           28-1]
          Length = 970

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y K+      + +G   +  N  +   +  QL+  A   +           KI  L  
Sbjct: 754 ELYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPA---VPEDGAKIDYLVD 810

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +    A    I+V   F S LA L+          A+  G T ++    +  +  G   
Sbjct: 811 ALPDLAAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSAR 869

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G GLNL    + +     WW+ +     +E   + R  + G  R V VY L
Sbjct: 870 VFLISLKSGGFGLNLTA-ADYVFLCDPWWNPQ-----VESQAIDRAHRIGQTRPVNVYRL 923

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
           +A+NTI++ VL     K  + D +L  +  +E  
Sbjct: 924 VAKNTIEQRVLAMQAQKRELFDQVLRGSENREVT 957


>gi|227875351|ref|ZP_03993493.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
 gi|227844256|gb|EEJ54423.1| SNF2 family superfamily II DNA/RNA helicase [Mobiluncus mulieris
           ATCC 35243]
          Length = 966

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y K+      + +G   +  N  +   +  QL+  A   +           KI  L  
Sbjct: 750 ELYQKYLVAARLEAEGLRAKRLNVLTALTRLRQLSLSARLINPA---VPEDGAKIDYLVD 806

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +    A    I+V   F S LA L+          A+  G T ++    +  +  G   
Sbjct: 807 ALPDLAAQDHNILVFSQFTSFLALLRARLEDQGITYAYLDGSTRNRRDQ-VDCFQRGSAR 865

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G GLNL    + +     WW+ +     +E   + R  + G  R V VY L
Sbjct: 866 VFLISLKSGGFGLNLTA-ADYVFLCDPWWNPQ-----VESQAIDRAHRIGQTRPVNVYRL 919

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
           +A+NTI++ VL     K  + D +L  +  +E  
Sbjct: 920 VAKNTIEQRVLAMQAQKRELFDQVLRGSENREVT 953


>gi|149180418|ref|ZP_01858923.1| helicase, SWF/SNF family protein [Bacillus sp. SG-1]
 gi|148852610|gb|EDL66755.1| helicase, SWF/SNF family protein [Bacillus sp. SG-1]
          Length = 1051

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 27/218 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      + +     +    K
Sbjct: 828  KLYAAYLAKLKHDTLKHLDKDTLRKNKIKILAGITRLRQICCHPALFVDGY---QGKSAK 884

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
            ++ L  IIE++  +   +++   F   L                       ++       
Sbjct: 885  LQQLMEIIEESKSSGRRVLIFSQFTRMLGLIGRELTGEGLPYFYLDGATPSEERMDLCNR 944

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL    + ++ +  WW+    Q         R  + G + 
Sbjct: 945  YNTGERDIFLISLKAGGTGLNLHS-ADTVILYDTWWNPAVEQ-----QAADRAHRMGQQN 998

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V V  L+A  TI+E + +    K  + + L+++ +  
Sbjct: 999  TVQVIRLVATGTIEEKMNELQEKKRHLVEELIDSQENR 1036


>gi|251795916|ref|YP_003010647.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247543542|gb|ACT00561.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 1088

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 28/213 (13%)

Query: 2    KQY----HKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y     K + E    L  +           +   +  Q+      +       E    
Sbjct: 857  KLYVSYLAKLRTETVKHLDNDRSLQQNRIKILAGLTRLRQICCHPALFI---TDYEGSSA 913

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQ 102
            K + L  I+E+       +++   F   L+                       +      
Sbjct: 914  KFEQLFEIVEECRSTGKRMLIFSQFTEMLSLISKELVRQGISYFYLDGSTKASERVELCN 973

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +N+G+  +  A   + G GLNL  G + ++ + LWW+    Q         R  + G  
Sbjct: 974  RFNDGEKDIFLASLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAHRIGQT 1027

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + V V  L A  T+++ +      K  + D ++
Sbjct: 1028 KVVQVIRLAAHGTVEDKMYALQERKKNMIDDII 1060


>gi|94263787|ref|ZP_01287593.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93455798|gb|EAT05965.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 1439

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 5    HKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
               +R     LQ +  EA         ++ ++  + A        +     +   K+   
Sbjct: 1217 ETIRRRAVEVLQEDEGEAAGSRHLKVLAELMRLRRAACHPRLVLGKGA---LMAGKLPLF 1273

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
              ++    +N    +V   F   LA +           +         +    +  +  G
Sbjct: 1274 AEVLHDIISNRHKALVFSQFVDHLAIVREYLDGQGIGYQYLDGSTPARERQRAVAAFQAG 1333

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 1334 EGEVFCISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRIGQERPVTI 1387

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y L+ + +I+E +L     K  + + LL
Sbjct: 1388 YRLVTKGSIEEKILALHGHKRDLAENLL 1415


>gi|293192909|ref|ZP_06609753.1| putative helicase [Actinomyces odontolyticus F0309]
 gi|292819965|gb|EFF78964.1| putative helicase [Actinomyces odontolyticus F0309]
          Length = 1043

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYHKF---QRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y ++   +R    DL    +    +  +   +  QLA      +E          KI+
Sbjct: 825  RIYDQYLARERARILDLLRDVDANRMSVLAAITRLRQLALDPALVEESYAHVG--SAKIE 882

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEG 107
             L   +++        +V   F S L R++    +          +       I+++  G
Sbjct: 883  YLADRLDEIVPLGHQALVFSQFTSFLERIRHMLERRGISAVQLDGSTRGRAEVIEKFRSG 942

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GL L    + +     WW+    +Q I+R       + G  + V V
Sbjct: 943  DAQVFLISLKAGGSGLTLTE-ADYVYVMDPWWNPAAEEQAIDR-----AHRIGQMKKVNV 996

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y ++A +TI+  V++    K  +   ++N 
Sbjct: 997  YRMVATDTIEAKVVELQDRKRQLISSVMNG 1026


>gi|154508745|ref|ZP_02044387.1| hypothetical protein ACTODO_01253 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798379|gb|EDN80799.1| hypothetical protein ACTODO_01253 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1043

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYHKF---QRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y ++   +R    DL    +    +  +   +  QLA      +E          KI+
Sbjct: 825  RIYDQYLARERARILDLLRDVDANRMSVLAAITRLRQLALDPALVEESYAHVG--SAKIE 882

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEG 107
             L   +++        +V   F S L R++    +          +       I+++  G
Sbjct: 883  YLADRLDEIVPLGHQALVFSQFTSFLERIRHMLERRGISAVQLDGSTRGRAEVIEKFRSG 942

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GL L    + +     WW+    +Q I+R       + G  + V V
Sbjct: 943  DAQVFLISLKAGGSGLTLTE-ADYVYVMDPWWNPAAEEQAIDR-----AHRIGQMKKVNV 996

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y ++A +TI+  V++    K  +   ++N 
Sbjct: 997  YRMVATDTIEAKVVELQDRKRQLISSVMNG 1026


>gi|167747531|ref|ZP_02419658.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
 gi|167652893|gb|EDR97022.1| hypothetical protein ANACAC_02252 [Anaerostipes caccae DSM 14662]
          Length = 1117

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 22/211 (10%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    + +   L  +             S+  +  QL        ++   K V  + +
Sbjct: 896  KLYDAHVKRMQLMLDKQSEEEFKSSKIQILSELTRLRQLCCSPELVFDQYTGKSVKSD-L 954

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
                +    +    I++   F S ++ L+                   +K    ++++N 
Sbjct: 955  CIDLIKNAVSGGHKILLFSQFTSMISILEERLQAEKISFYTLTGSVNKEKRARMVEDFNN 1014

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    +I++ +  WW+L      ++     R  + G +  V 
Sbjct: 1015 DDTSVFCISLKAGGTGLNLTS-ADIVIHYDPWWNLA-----VQNQATDRAHRIGQENVVM 1068

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LI + TI++ +++    K  + D +L  
Sbjct: 1069 VYRLIVEGTIEDNIVKLQEKKKELADQILGG 1099


>gi|229172496|ref|ZP_04300055.1| Helicase, SWF/SNF [Bacillus cereus MM3]
 gi|228610967|gb|EEK68230.1| Helicase, SWF/SNF [Bacillus cereus MM3]
          Length = 1064

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKNLIAEVIEPGEEK 1049


>gi|255034080|ref|YP_003084701.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
 gi|254946836|gb|ACT91536.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
          Length = 1129

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y+ ++ E Y  L             +      K  Q+ N      ++ ++      KI
Sbjct: 907  KVYNAYELEFYNFLNTRNQGDIERSRLHVLQGLTKLRQICNSPALLRDDLYY-GDSSAKI 965

Query: 57   KALEVIIEKA-NAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNE 106
              L   IE       I+V   F S L  ++           +  G+T D+          
Sbjct: 966  DVLMEQIEDTAPWHKILVFSQFTSMLDLIRPRLEERGIGYEYLTGQTRDRGARVENFQTN 1025

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              + +      + G GLNL    + +     WW+       +E   + R  + G ++ V 
Sbjct: 1026 AHVRIFLISLKAGGTGLNLTE-ADYVYLIDPWWNPA-----VENQAIDRSHRIGQQKNVI 1079

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               LI   TI+E V++   TK  + + L+
Sbjct: 1080 AVRLICPGTIEEKVMELQETKKDLANDLV 1108


>gi|159028539|emb|CAO87345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1040

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +E+   L+            S  ++  Q+ N    +  +   +      K++ L
Sbjct: 809  LYEVVIKEVEKQLEEAEGIKRKGLILSTLMRLKQICNHPRQFLQDNSAFTPERSHKLERL 868

Query: 60   EVIIEKA--NAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++E+       +++   F                        G +  K    I+E+  
Sbjct: 869  GEMLEEVILEGDSLLIFTQFTEIGDSLQKYLKQTFRYNTYYLHGGTSQPKREQMIEEFQH 928

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+ L    N +  F  WW+       +E     R  + G ++ 
Sbjct: 929  PETEPSVFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VENQATDRAFRIGQQKN 982

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFV+  +   T++E + + +  K  + + +++
Sbjct: 983  VFVHKFVTLGTLEERIDEMIEEKKKVANAIVS 1014


>gi|300868337|ref|ZP_07112963.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333630|emb|CBN58149.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 1109

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 28/219 (12%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
             Y K   E    ++            +  VK  Q+ N  +   EE   K++        K
Sbjct: 869  IYQKVVEESLAAIESADGIQRRGMILALLVKLKQICNYPILSKEEGKSKKLEINSQESGK 928

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQ 102
            ++ L+ ++E+  +     ++   F              L R       G    +    I 
Sbjct: 929  LQRLDEMLEEVLSAEDRALIFTQFAEWGHLLKAHLEKHLGREILFLYGGTRQQQREEMID 988

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +       P++     + G GLNL      +  +  WW+       +E     R  + G
Sbjct: 989  RFQHDPQGPPIMILSLKAGGTGLNLTR-ATHVFHYDRWWNPA-----VENQATDRVFRIG 1042

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R V V+  +   T++E +   + +K  + + ++   +
Sbjct: 1043 QTRNVQVHKFVCTGTLEEKIHDMIESKKALAEQVVGGGE 1081


>gi|153870520|ref|ZP_01999904.1| SNF2 family protein [Beggiatoa sp. PS]
 gi|152073016|gb|EDN70098.1| SNF2 family protein [Beggiatoa sp. PS]
          Length = 1036

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +E+   L+               +K  Q+ N    +  +   + +    K++ L
Sbjct: 804  LYEAVVKEVAAQLEEAEGIQRKGLMLSTLMKLKQICNHPRQFLQDSSIFSKERSHKLERL 863

Query: 60   EVIIEKA--NAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++E+        ++   F             +L         G T +K    I E+ E
Sbjct: 864  TEMLEEVIAEQESALIFTQFTEIGENLNKYLKHNLNYNSYYLHGGTTRNKREQMITEFQE 923

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P  +      + G G+ L    N +  F  WW+       +E     R  + G  + 
Sbjct: 924  SDTPPSVFVLSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEDQATDRAFRIGQHKN 977

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  ++  T++E + + +  K  I   ++ + +
Sbjct: 978  VFVHKFVSLGTLEERIDEMIEDKKKIARSIVGSDE 1012


>gi|295704607|ref|YP_003597682.1| SNF2 helicase family protein [Bacillus megaterium DSM 319]
 gi|294802266|gb|ADF39332.1| SNF2 helicase family protein [Bacillus megaterium DSM 319]
          Length = 1068

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 23/209 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            + Y  +  +L   L GE+         +   +  Q+      + E     E +  K++ L
Sbjct: 849  ELYVGYLEQLKSSLAGEDFNKNRMKILAGLTRLRQICCHPSLFVENY---EGYSSKLEQL 905

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
              I   A  N   +++   F S L  +                     +       +N G
Sbjct: 906  LEITRNAVANGKRLLIFSQFTSMLHIIREELQKENLSYFYLDGQTPSKERVEMADRFNNG 965

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V V
Sbjct: 966  EQDIFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVVQV 1019

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              LI+Q TI+E +    + K  + + ++ 
Sbjct: 1020 IKLISQGTIEEKIYGLQQKKKELIEQVIQ 1048


>gi|153006894|ref|YP_001381219.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030467|gb|ABS28235.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 931

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 20/187 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSD-- 80
             +  ++  Q+ N    +  +  +      K   L  I +   +     +V   F     
Sbjct: 722 VLAYLLRLKQICNHPSQWLGDGEYGPGASGKFARLAEIADTVASRQEKALVFTQFREMTE 781

Query: 81  ---------LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
                      R          +      ++ +  +  +P L     + G GLNL    +
Sbjct: 782 PLARFLAGPFGRPGLVLHGHTRVKDRAALVRRFQEDETLPFLVLSLKAGGTGLNLTA-AS 840

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +V F  WW+       +E     R  + G KR V V+ L+ + T++E +   L  K  +
Sbjct: 841 HVVHFDRWWNPA-----VENQATDRAFRIGQKRPVLVHKLVCRGTVEERIDSMLEDKRRL 895

Query: 191 QDLLLNA 197
              LL  
Sbjct: 896 SQELLEG 902


>gi|152977445|ref|YP_001376962.1| non-specific serine/threonine protein kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026197|gb|ABS23967.1| Non-specific serine/threonine protein kinase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 918

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++                K  Q+ N    Y +E   K++     K++ 
Sbjct: 695 LYEQLVQDTLKNVENLNGIERRGFILLMLNKLKQICNHPALYLKEDVPKDIVQRSMKMQT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      LQ                     +    I+++ 
Sbjct: 755 LMDLIENIKNQNESCLIFTQYIGMGHMLQTVLEETFGQRVLYLNGSVPKKERDKMIEQFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 815 NRTYDIFILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V+ LI   T++E + + L  K ++ + ++ +  
Sbjct: 869 HVHKLITTGTLEEKIDEMLERKQSLNNAVITSDN 902


>gi|291547356|emb|CBL20464.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus sp.
            SR1/5]
          Length = 1130

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y          L                ++  +  Q+        E       +  K+
Sbjct: 908  ELYEAHTERFRLMLGMQSDAEFRTSKLQILAEITRLRQICCYPGLVYEGYK---GNSSKL 964

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
            +    +++        I++   F + L                     + +K    +  +
Sbjct: 965  EMCMELVQNAVNGGHKILLFSQFTTMLDVLAVRLKKAKVSFYMLTGSTSKEKRAQMVHAF 1024

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            NE    +      + G GLNL    +I++ +  WW+L      ++     R  + G +  
Sbjct: 1025 NEDDTSVFCISLKAGGTGLNLTA-ADIVIHYDPWWNLA-----VQNQATDRAHRIGQQNV 1078

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L  ++TI+E +      K  + D +LN 
Sbjct: 1079 VSVYRLFMKDTIEERIRALQERKRELADEILNG 1111


>gi|156603990|ref|YP_001429936.1| hypothetical protein SPTP3102_gp41 [Staphylococcus phage tp310-2]
 gi|154818076|gb|ABS87503.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 455

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y ++   +E+HD+K++ LE
Sbjct: 257 KLYDELEKHYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDGDVREIHDKKLEKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILERFKEATT-LEDSNYKERWNSGNIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YEALQNKELTQEELMKAIKARI 451


>gi|293400001|ref|ZP_06644147.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306401|gb|EFE47644.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 446

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 9/203 (4%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           M  YH+F+RE    + +   I A N+   T K LQ   GAV YDE    +E+HD K+KAL
Sbjct: 250 MVAYHRFKREKILQICEDGVITAANAGVVTNKLLQFTAGAV-YDENHEVQELHDTKLKAL 308

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPAS 118
           E ++E AN  P++V Y+F  D  R+   FP       +    +++WN+GKI +L  HPAS
Sbjct: 309 EDLLEAANGNPVMVFYYFKHDRDRIIDHFPDVEIRAIECQQDVKDWNDGKIEMLLVHPAS 368

Query: 119 CGHGLNLQYGGNILVFFS-LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            GHGLNLQ GGNI+++++   W+LE +          R  + G +  V +Y+LIA+ T+D
Sbjct: 369 VGHGLNLQQGGNIIIWYTLPNWNLELYL-----QANARLHRQGQQNTVMIYHLIAKGTVD 423

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           E +++ L  K   Q  L+ ALK+
Sbjct: 424 EDMIRSLEQKDISQKTLIEALKR 446


>gi|1769947|emb|CAA67095.1| SNF [Bacillus cereus ATCC 10987]
          Length = 1064

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K++ L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKLEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKHLIAEVIEPGEEK 1049


>gi|145595877|ref|YP_001160174.1| non-specific serine/threonine protein kinase [Salinispora tropica
            CNB-440]
 gi|145305214|gb|ABP55796.1| Non-specific serine/threonine protein kinase [Salinispora tropica
            CNB-440]
          Length = 1050

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   +  Q+ N   +   +         K+  LE
Sbjct: 820  LYRAVVDDMMAQIESSEGIERRGLVLAAMTRLKQVCNHPAHLLRDNSALVGRSGKLARLE 879

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
             I+++        ++   +      L+                G         +  +   
Sbjct: 880  EILDEVLVAGEKALLFTQYAEFGGMLRGHLSARFGQETLFLHGGVGKADRDAMVTRFQSP 939

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P L      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 940  DGPALFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQRRRVQ 993

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E V   +  K  +   ++ A ++
Sbjct: 994  VRKFVCAGTVEEKVAALIADKRRLASTVVGAGEQ 1027


>gi|315223118|ref|ZP_07864986.1| protein, SNF2 family [Streptococcus anginosus F0211]
 gi|315187807|gb|EFU21554.1| protein, SNF2 family [Streptococcus anginosus F0211]
          Length = 1036

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + +  +    + E N       S  ++  Q+ +    + E+ H +     K+++L  ++
Sbjct: 815  KQMRERVLTSTEEELNRSKMEILSGLMRLRQICDTPALFMEDYHGE---SGKLESLMELL 871

Query: 64   EKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+    +  +++   F   L  ++                    +       +N G+   
Sbjct: 872  EQIQTGSHRVLIFSQFRGMLDIIEKELKKMKIETFKITGSTPAKERQEMTNAFNNGEGDA 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY LI
Sbjct: 932  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VESQAIGRAHRMGQERNVEVYRLI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 986  TRGTIEEKIQELQESKRHLVSTILDGTESR 1015


>gi|303245900|ref|ZP_07332182.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
 gi|302492683|gb|EFL52551.1| SNF2-related protein [Desulfovibrio fructosovorans JJ]
          Length = 755

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 23/215 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    ++L   L             +   K  Q+ N    +  +         K+  L 
Sbjct: 524 LYAAVLKDLEKTLAEAEGIKRKGIILATLSKLKQVCNHPAQFLGDNSAIADRSGKLSRLT 583

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-- 105
            ++E+        +V   F      L+                G T +     ++ +   
Sbjct: 584 EMLEEVVEAGDRALVFTQFKEMGDLLKTHLQETFGQELLFLHGGVTKNLRDKMVERFQSS 643

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G  P+      + G GLNL    N +  +  WW+       +E     R  + G  + V
Sbjct: 644 AGAPPIFILSLKAGGTGLNLTN-ANHVFHYDRWWNPA-----VENQATDRAFRIGQHKNV 697

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+  +   T+++ +   +  K ++ + ++   + 
Sbjct: 698 LVHKFLCVGTLEDKIDAMIEQKQSLANAVVGTGEA 732


>gi|266625310|ref|ZP_06118245.1| helicase, SNF2/RAD54 family [Clostridium hathewayi DSM 13479]
 gi|288862792|gb|EFC95090.1| helicase, SNF2/RAD54 family [Clostridium hathewayi DSM 13479]
          Length = 889

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            ++          +     ++  +  Q+                   K++    +I    
Sbjct: 679 VKQQLELAGDGGSDRIQILAQLTRLRQICCDPHL---CYSNYNGSSAKLETCIDLIRNGV 735

Query: 66  ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                I++   F S L                       ++    +  + +  +P+    
Sbjct: 736 EGGHKILLFSQFTSMLEIIEKRLKKEGMAYYILTGATPKEERLHMVSSFKDDGVPVFLIS 795

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    ++++ +  WW++             R  + G ++ V V+ LI + T
Sbjct: 796 LKAGGTGLNLTA-ADVVIHYDPWWNVAAQ-----NQATDRTHRIGQEKQVTVFKLITKGT 849

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E +L+   +K  + + ++
Sbjct: 850 IEENILKLQESKKNLAEQII 869


>gi|166362977|ref|YP_001655250.1| SNF2 helicase-like protein [Microcystis aeruginosa NIES-843]
 gi|166085350|dbj|BAG00058.1| SNF2 helicase homolog [Microcystis aeruginosa NIES-843]
          Length = 1020

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKA 58
           + Y +        ++       +    +  ++  Q+ N   ++  E          K+  
Sbjct: 782 QLYQQLVETTLQKIEEIQGIQKHGLILTLLMQLKQICNHPAHFLKENSLETSQRSGKLLR 841

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWN 105
           LE ++E+  A     ++   F      LQ    +                     I+ + 
Sbjct: 842 LEAMVEEVIAEGDRALIFTQFAEWGKLLQTHLQKKLAEEILFLSGSTKAKDRVEMIERFQ 901

Query: 106 EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 902 NDPQGPKIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKR 955

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  I   T++E + + + +K  + +  ++A +
Sbjct: 956 NVQVHKFICTGTLEERINEMIESKKQLAEQTVDAGE 991


>gi|330897626|gb|EGH29045.1| SNF2-related:helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 559

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 331 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 390

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 391 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 450

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 451 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 504

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 505 ARGTVEEKIQRLQREKSALASGVLDG 530


>gi|315604148|ref|ZP_07879214.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313854|gb|EFU61905.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1045

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYHK----FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y +     +  +   L   +    +  S   +  QLA      D    +  V   KI+
Sbjct: 827  RIYDQHLARVRARILDLLADVDANRMSVLSSLTRLRQLALDPALVD--GAYSRVGSAKIE 884

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +++        +V   F S LAR++               +       I+E+  G
Sbjct: 885  YLADHLDEIVPLGHQALVFSQFTSFLARIRGALERRGIAVVQLDGSTRDRDRVIEEFRSG 944

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GL L    + +     WW+    +Q I+R       + G  + V V
Sbjct: 945  QAQVFLISLKAGGAGLTLTE-ADYVYVMDPWWNPAAEEQAIDR-----AHRIGQTKKVNV 998

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A +TI+  V++    K  +   ++N 
Sbjct: 999  YRLVAADTIEAKVVELQDRKRRLISSVMNG 1028


>gi|297561233|ref|YP_003680207.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
            DSM 43111]
 gi|296845681|gb|ADH67701.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
            DSM 43111]
          Length = 1033

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 24/210 (11%)

Query: 3    QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y     E+     +   +  +     +   +  Q+ N    +  +         K++ +
Sbjct: 803  LYKAVVDEMGERLAEATEKERKGL-VLATMSRLKQICNHPAQFLGDGSALSGRSGKLERV 861

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNE 106
            E I+  A       +    +     R                  G    +     Q + E
Sbjct: 862  EAILASAAAEGDKALCFTQYARFGERLAPYLRSRLGVPVLWLHGGTPRAEREEMTQRFQE 921

Query: 107  GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P +      + G GLNL    N +V    WW+       +E     R  + G +R V
Sbjct: 922  MEGPAVFLLSLKAAGTGLNLTA-ANHVVHVDRWWNPA-----VENQATDRAFRIGQRRDV 975

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V  ++   T++E V + +  KS + D  +
Sbjct: 976  QVRKMVCVGTVEERVDEMIERKSALADGAV 1005


>gi|269127783|ref|YP_003301153.1| SNF2-like protein [Thermomonospora curvata DSM 43183]
 gi|268312741|gb|ACY99115.1| SNF2-related protein [Thermomonospora curvata DSM 43183]
          Length = 990

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 23/210 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     ++   +      A       +   +  Q+ N       +         K++ L
Sbjct: 759 LYQATVDDMLAQIAEAGSSAARRGLVLATMARLKQVCNHPAQLLRDGSRLAGRSGKLERL 818

Query: 60  EVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE 106
           E I  +        +    +              L         G         ++ + E
Sbjct: 819 EEICAQVVERGEKALAFTQYAEFGAMLQPYLAARLGCPVLWLHGGTPRRVRDELVRRFQE 878

Query: 107 GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              P +      + G GL L    N +V    WW+       +E     R  + G  R V
Sbjct: 879 EAEPAVFLLSLKAAGTGLTLTA-ANHVVHIDRWWNPA-----VEDQATDRAFRIGQTRDV 932

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  LI   T++E V + +  K  +   ++
Sbjct: 933 QVRKLICVGTLEERVEEMIERKKALAGSVV 962


>gi|42780946|ref|NP_978193.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|42736867|gb|AAS40801.1| helicase, putative [Bacillus cereus ATCC 10987]
          Length = 1064

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K++ L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKLEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEEKMHELQESKKHLIAEVIEPGEEK 1049


>gi|229096334|ref|ZP_04227307.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
 gi|228687294|gb|EEL41199.1| Helicase, SWF/SNF [Bacillus cereus Rock3-29]
          Length = 1068

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   TK  +   ++   + +
Sbjct: 1024 AHGTIEEKMHELQETKKNLIAEVIEPGEGK 1053


>gi|229102446|ref|ZP_04233153.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
 gi|228680931|gb|EEL35101.1| Helicase, SWF/SNF [Bacillus cereus Rock3-28]
          Length = 1068

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   TK  +   ++   + +
Sbjct: 1024 AHGTIEEKMHELQETKKNLIAEVIEPGEGK 1053


>gi|282898428|ref|ZP_06306418.1| SNF2-related helicase [Raphidiopsis brookii D9]
 gi|281196594|gb|EFA71500.1| SNF2-related helicase [Raphidiopsis brookii D9]
          Length = 1427

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 71/208 (34%), Gaps = 21/208 (10%)

Query: 4    YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   +R+    L   + +         ++ ++  +          + +       ++   
Sbjct: 1208 YEALRRQAISKLNESDADPGRKHLQVLAEIMRLRRACCSPSLVMPDINLSS-SKLQLLGE 1266

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
             +     N    +V   F   L  ++    +             + +   ++  +  G  
Sbjct: 1267 LLAELLENHHKALVFSQFVDHLHIIRNYLERKSIKYQYLDGSTPMAERKRSVDSFQAGDG 1326

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    + ++    WW+       +E     R  + G +R V +Y 
Sbjct: 1327 DVFLISLKAGGTGLNLTA-ADYVIHTDPWWNPA-----VEDQASDRAHRIGQERPVTIYR 1380

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+A++TI++ +++    K  + D LL  
Sbjct: 1381 LVAKDTIEDKIVELHHHKRDLADTLLEG 1408


>gi|302871105|ref|YP_003839741.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573964|gb|ADL41755.1| SNF2-related protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 1139

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 35/230 (15%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++   G         S   +  Q+        E+         K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFEDYK---GSSGK 973

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ ++K   + + L                +  
Sbjct: 974  MEALKEILQDCLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G K 
Sbjct: 1034 FNSGEKNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPA-----VENQATARSHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             V  + +IA+N+I+E +L   + K  + D L+ A         K+E + +
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEASQSFIGKLTKEEIMEL 1137


>gi|229074784|ref|ZP_04207799.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
 gi|228708296|gb|EEL60454.1| Helicase, SWF/SNF [Bacillus cereus Rock4-18]
          Length = 1068

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   TK  +   ++   + +
Sbjct: 1024 AHGTIEEKMHELQETKKNLIAEVIEPGEGK 1053


>gi|229115289|ref|ZP_04244698.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
 gi|228668121|gb|EEL23554.1| Helicase, SWF/SNF [Bacillus cereus Rock1-3]
          Length = 1068

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 853  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLEIL 909

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 910  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCNRFNEGEGDL 969

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 970  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1023

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+E + +   TK  +   ++   + +
Sbjct: 1024 AHGTIEEKMHELQETKKNLIAEVIEPGEGK 1053


>gi|113475235|ref|YP_721296.1| hypothetical protein Tery_1543 [Trichodesmium erythraeum IMS101]
 gi|110166283|gb|ABG50823.1| Protein splicing site [Trichodesmium erythraeum IMS101]
          Length = 1531

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 33/223 (14%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDE 54
             Y         ++   G         +  +K  QL N  V    +K         + +  
Sbjct: 1292 LYQNIVENSLAEIDTVGGIQRKGKILALLIKLKQLCNHPVLLQIKKGSRKKVEITDKNSG 1351

Query: 55   KIK----ALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPC 99
            K++     LE II +      I+   F              L R            K   
Sbjct: 1352 KLQRLGAMLEEIISEEE--RAIIFTQFAEWGKVLQPYLQKSLGREVSFLYGSTQRSKREE 1409

Query: 100  TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++       P++     + G GLNL    N +  F  WW+       +E     R  
Sbjct: 1410 MIDQFQLDPQGPPVMILSLKAGGTGLNLTR-ANHVFHFDRWWNPA-----VENQATDRVF 1463

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V V+  +   T++E +   + +K  + + ++ A +K
Sbjct: 1464 RIGQTRNVQVHKFVCTGTLEEKIHDLIESKKELAEQVVGAGEK 1506


>gi|212640482|ref|YP_002317002.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
 gi|212561962|gb|ACJ35017.1| SWF/SNF family helicase [Anoxybacillus flavithermus WK1]
          Length = 898

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++    L+  +  A             QL N    Y +EKH K++     K++ 
Sbjct: 674 LYEQIVQQSLEKLEQVDGFARRGIILQMLNSLKQLCNHPALYLKEKHPKQIVERSHKVEK 733

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  ++E+   N    ++   +      +Q                          I+++ 
Sbjct: 734 LLELVEQIRENGESCLIFTQYIQMGEMIQHLLSTHLKETVVFLNGSTPKQTRDEMIEQFQ 793

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 794 NGQFHIFILSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 847

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I   TI+E +   L  K  + + L+ +
Sbjct: 848 HVHKFITTGTIEEKIDDMLEKKQALNEQLIQS 879


>gi|300718555|ref|YP_003743358.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
 gi|299064391|emb|CAX61511.1| helicase/SNF2 domain-containing protein [Erwinia billingiae Eb661]
          Length = 877

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 16/175 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+         +K  K  H  K+  L  +++   A    I++   F + L+ + +   +
Sbjct: 689 RQICCDPRLVKTDKAAKVKHSAKLALLREMLDDLLAEDRRILIFSQFTTMLSLIAEELQK 748

Query: 91  GRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R                ++ + EG++P+      + G GLNL    + ++ +  WW+  
Sbjct: 749 ARIPFVTLTGSTRDRIEPVRRFQEGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA 807

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 E     R  + G  + VFVY LIA  +I+E ++     K+ + D +L  
Sbjct: 808 A-----ENQATDRAYRLGQDKPVFVYKLIAAGSIEEKIVALQGQKAELADSILED 857


>gi|167630922|ref|YP_001681421.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
 gi|167593662|gb|ABZ85410.1| snf2 family helicase [Heliobacterium modesticaldum Ice1]
          Length = 449

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 17/210 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK Y    R+ Y +L    + A N  ++ ++  Q+  G +   E    + V   K +ALE
Sbjct: 233 MKIYRDLVRDSYAELGKGEVTATNILTRLLRLSQITGGFIGGGEGGPVQRVSTAKEEALE 292

Query: 61  VIIEK--ANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            IIE    +   +++   F  ++           ++ +   G   D++       N  ++
Sbjct: 293 DIIEDVLQSGKKLVIIARFIPEINAICRLLEKKGIRYSLLMGGVKDREEQVSAFQNGPEV 352

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G+ L    + +VF+SL + +   +         R  + G K      Y
Sbjct: 353 QVFVGQIATAGLGVTLTA-ASTMVFYSLDYSMSNFE-----QARARIHRVGQKENCTYLY 406

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           L A+ T+DE VL+ LR K+ +  +L++  +
Sbjct: 407 LTAKGTVDEKVLKALRDKADLARMLVDDYR 436


>gi|255348934|ref|ZP_05380941.1| SWI/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503474|ref|ZP_05381864.1| SWI/SNF family helicase [Chlamydia trachomatis 70s]
          Length = 1199

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|302345308|ref|YP_003813661.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
 gi|302150135|gb|ADK96397.1| SNF2 family N-terminal domain protein [Prevotella melaninogenica ATCC
            25845]
          Length = 1343

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    +     +  ++ ++     Q+A      D      ++   K+ A  
Sbjct: 1124 MAMYEVKRRETEAKILENKADKVSTLAELTHLRQMACSCSLVD---KKWKLPSSKVLAFI 1180

Query: 61   VIIEKANA--APIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S                       ++      ++E+  GK
Sbjct: 1181 DLAESLNDSDNRALVFSQFTSFFEEVRKAMDKAKLPYLYLDGSTSMAMREKLVKEFQTGK 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N +V    WW+    Q         R  + G ++ V VY
Sbjct: 1241 CPFFLISLKAGGLGLNLT-GANYVVHLDPWWNPAIEQ-----QATDRAYRIGQQQDVTVY 1294

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1295 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1323


>gi|255507152|ref|ZP_05382791.1| SWI/SNF family helicase [Chlamydia trachomatis D(s)2923]
          Length = 1199

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|89095677|ref|ZP_01168571.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
 gi|89089423|gb|EAR68530.1| hypothetical protein B14911_03069 [Bacillus sp. NRRL B-14911]
          Length = 942

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y +  ++ + +++                +  QL N    Y  +E+         K++ 
Sbjct: 718 LYEQLVKDTFAEIEKLSGFERKGLILQLLSRLKQLCNHPALYLKEEKPSHLLERSSKLEK 777

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWN 105
           L  +++         ++   +      +QK   +             + ++    I  + 
Sbjct: 778 LNELVDAVLEQEESCLIFTQYIEMGHMIQKIMKKRHGIDVPFLNGSVSKNERDRMITRFQ 837

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+ P+      + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 838 DGEFPVFLLSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 891

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   T++E +   L  K T+ D ++ +
Sbjct: 892 HVHKLICTGTLEEKIDLMLEKKQTLNDQVIQS 923


>gi|289525600|emb|CBJ15078.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis Sweden2]
 gi|296435160|gb|ADH17338.1| SWI/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296438880|gb|ADH21033.1| SWI/SNF family helicase [Chlamydia trachomatis E/11023]
          Length = 1199

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|326789214|ref|YP_004307035.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
 gi|326539978|gb|ADZ81837.1| SNF2-related protein [Clostridium lentocellum DSM 5427]
          Length = 1119

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 27/217 (12%)

Query: 2    KQYHK----FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E+  +L+ + + A +    +   +  QL      Y ++         K
Sbjct: 895  KLYTAHLALAKKEMEEELKAKGVGASHIKMLALLTRLRQLCCHPSMYLQDYTET---SGK 951

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
            ++    I++        I++   F + L                       ++    + E
Sbjct: 952  LEQCMEIVKDSIEAGHKILLFSQFTTMLDILSNRLYSEGIEHFMLTGSTKAEERMRLVNE 1011

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N   IP+      + G GLNL  G ++++ +  WW+L             R  + G K 
Sbjct: 1012 FNTSDIPVFLISLKAGGTGLNLT-GADVVIHYDPWWNLSSQ-----NQATDRAYRIGQKN 1065

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V+ +I +N+I+E + +    K  + + +L   + 
Sbjct: 1066 KVQVFQMITKNSIEEKIKELQDKKIGLTESVLQEGEA 1102


>gi|292900753|ref|YP_003540122.1| helicase [Erwinia amylovora ATCC 49946]
 gi|291200601|emb|CBJ47732.1| putative helicase [Erwinia amylovora ATCC 49946]
          Length = 852

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R                ++ + +G++P+      + G GLNL    + ++ +  WW+  
Sbjct: 725 ARIPFVTLTGATRDRNEPVRSFQQGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA 783

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 E     R  + G  + VFVY LIA  TI+E ++   + K+ + + +LN 
Sbjct: 784 A-----ENQATDRAWRLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILND 833


>gi|292486850|ref|YP_003529720.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
 gi|291552267|emb|CBA19304.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora
           CFBP1430]
          Length = 852

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R                ++ + +G++P+      + G GLNL    + ++ +  WW+  
Sbjct: 725 ARIPFVTLTGATRDRNEPVRSFQQGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA 783

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 E     R  + G  + VFVY LIA  TI+E ++   + K+ + + +LN 
Sbjct: 784 A-----ENQATDRAWRLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILND 833


>gi|330443940|ref|YP_004376926.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
 gi|328807050|gb|AEB41223.1| helicase, Snf2/Rad54 family [Chlamydophila pecorum E58]
          Length = 1117

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 86/213 (40%), Gaps = 19/213 (8%)

Query: 6    KFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVII 63
            + ++     L+  E     +  +      Q+ +   V++ + + +   H  K      ++
Sbjct: 887  QQEKSQIQQLETEETTNFLHIFALLNHLKQICDHPAVFFKKPEEYHHHHSGKWNVFVKLL 946

Query: 64   EKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  +   ++V   +   +  +         + A  QG++L++     +   +    + 
Sbjct: 947  QDSLASGYKVVVFSQYIHMIQIITQYLEEIGIKYASIQGKSLNRKEEIERFSTDPTCRVF 1006

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL   GNI++ +  WW+  +     E   + R  + G K  VF+Y LI 
Sbjct: 1007 VGSLLAAGTGINLTA-GNIVIMYDRWWNPAK-----ENQALDRVHRFGQKNTVFIYKLIT 1060

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +NT++E +   +  K  + D ++       +H+
Sbjct: 1061 ENTLEERIHYLIEKKIHLLDKVIVTQDSNILHM 1093


>gi|326803590|ref|YP_004321408.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650654|gb|AEA00837.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 970

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y  +  ++   L+  ++   +      +   +  Q+       +      +    K + 
Sbjct: 746 VYLAYLEDIRDRLKDNDVNGSHKHMEMLAAITRLRQICCHPALVN---SDYQGTSGKFEY 802

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
            + ++E+  +N   I+V   F S LA +Q    Q               K    +  +N+
Sbjct: 803 FKRMLERALSNHRRILVFSQFTSMLAIMQDYLDQEAINYFIIEGKTNKEKRQDQVNRFNQ 862

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  +      + G G+NL  G + +  + LWW+       +E   + R  + G  + V 
Sbjct: 863 GEGSVFLISLRAGGVGINLT-GADTVFLYDLWWNPS-----VEEQAIGRAHRIGQTKDVE 916

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY  I + TI+E + +    K  + D L    +
Sbjct: 917 VYRFITEGTIEERIAELQEEKRHLFDELFQDEE 949


>gi|119897130|ref|YP_932343.1| SWI/SNF family helicase [Azoarcus sp. BH72]
 gi|119669543|emb|CAL93456.1| SWI/SNF family helicase [Azoarcus sp. BH72]
          Length = 1098

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 3    QYHKFQRELYCDLQGEN------IEAFNSASKTVKCLQLANGAVYYDEEKHW-KEVHDEK 55
             Y   +  +   ++ E                 +K  Q+              K     K
Sbjct: 870  LYETVRAAMDSKIRDEIAAKGYARSQIVILDALLKLRQVCCDPRLLKTTAAAAKVKERAK 929

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN 105
            +  L  ++ +       I+V   F   LA +                        ++++ 
Sbjct: 930  LDLLMSMLPELIDEGRRILVFSQFTQMLALIAAELDKAKIGWVALTGDTRDRRIPVEDFQ 989

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G+ P+      + G GLNL    + ++ +  WW+        E     R  + G  + V
Sbjct: 990  KGRAPVFLISLKAGGVGLNLTT-ADTVIHYDPWWNPAA-----ENQATDRAHRIGQDKPV 1043

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            FV+ LI   +I+E +L     K+ +   +L+ 
Sbjct: 1044 FVFKLICAGSIEERILSLQDKKAALAASVLSE 1075


>gi|312623213|ref|YP_004024826.1| SNF2-like protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203680|gb|ADQ47007.1| SNF2-related protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 1140

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 35/230 (15%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++   G         S   +  Q+        E+         K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFEDYK---GSSGK 973

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ +                    +     +  
Sbjct: 974  MEALKEILQDCLESGHRVIIYSQWTSMLSIINKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPA-----VENQATARAHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             V  + +IA+N+I+E +L   + K  + D L+ A         K+E + +
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEASQSFIGKFTKEEIMEL 1137


>gi|150388431|ref|YP_001318480.1| non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
 gi|149948293|gb|ABR46821.1| Non-specific serine/threonine protein kinase [Alkaliphilus
            metalliredigens QYMF]
          Length = 1141

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + + ++  +++            +   +  Q+      + E     E    K
Sbjct: 919  KLYLAYLKQIKGQIQEEIEQNGFERSQMKILAGLTRLRQICCHPSLFVENY---EGGSGK 975

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
            +  LE ++         I++   F S L  +++                 ++     ++E
Sbjct: 976  LDLLEEVVAASLEAGHRILLFSQFTSMLKMIREKLDQQGIEYAYLDGSTPMEARGEIVKE 1035

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEGK  +      + G GLNL  G + ++ F  WW+       +E     R  + G K 
Sbjct: 1036 FNEGKGSIFLISLKAGGTGLNLT-GADTVIHFDPWWNPA-----VEDQATDRAYRIGQKN 1089

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V   IAQ TI+E + +    K  + + ++ 
Sbjct: 1090 KVHVMKFIAQGTIEEKIFKLQERKKEMINAVIQ 1122


>gi|56421797|ref|YP_149115.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56381639|dbj|BAD77547.1| DNA/RNA helicase (SNF2 family) [Geobacillus kaustophilus HTA426]
          Length = 919

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ +    Y +E+  +++     K++ 
Sbjct: 688 LYEQLVNDTLERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVERSHKLEK 747

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +IE+   N    ++   +      +Q+               G         + E+ 
Sbjct: 748 LIELIEQIRANDESCLIFTQYVRMGEMIQELLSDLFDERVLFLHGGVPKQTRDRMVDEFQ 807

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 808 AKKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 861

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + + L  K  + D++   
Sbjct: 862 HVHKLITTGTIEEKIDEMLEQKQALADVITEG 893


>gi|326798632|ref|YP_004316451.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326549396|gb|ADZ77781.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 1176

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y K+ +    +L     +G +          +K  Q+ N        K     H  K+
Sbjct: 954  RVYEKYLQYFRGELANKIEEGRDKATMFVLEALMKLRQICNSPAILP--KETYPNHSSKL 1011

Query: 57   KALEV-IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEW 104
            + ++  I+EK     +++   F S L  L+    +                +     +  
Sbjct: 1012 EEIQEHILEKTQGHKLLIFSSFTSMLGLLKIELEKMGIAYAYLDGKTSGEQRQQEVTRFQ 1071

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G GLNL    + +     WW+        E   + R  + G ++ 
Sbjct: 1072 EQDDCRVFLISLKAGGTGLNLTA-ADYVYILDPWWNPAA-----EAQAIDRCYRIGQEKH 1125

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y +I ++TI+E +L     K  + D L+ 
Sbjct: 1126 VMAYRMICKDTIEEKILNMQANKKALADSLIQ 1157


>gi|121607802|ref|YP_995609.1| SNF2-like protein [Verminephrobacter eiseniae EF01-2]
 gi|121552442|gb|ABM56591.1| SNF2-related protein [Verminephrobacter eiseniae EF01-2]
          Length = 917

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K    L   LQ            +  ++  Q+ N    +  +  +      K   L 
Sbjct: 681 LYQKSVEALARQLQTLEGIERRGVVLAFLMRFKQICNHPSQWLGDGAYGPSDSGKFARLR 740

Query: 61  VIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            + E        ++V   F               AR       G  + +    +  +  E
Sbjct: 741 ELAEAVAGRQEKVLVFTQFQEMTAPLVQFLQSVFARPGLVLHGGTAVKERAALVDAFQRE 800

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + +V F  WW+       +E     R  + G K+ V 
Sbjct: 801 QGPPFFVLSLKAGGTGLNLTA-ASHVVHFDRWWNPA-----VENQATDRAYRIGQKKNVL 854

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  + + T++E +   +  K  + + ++  
Sbjct: 855 VHKFVCRGTVEERIDALVEAKLGLSNQIIEG 885


>gi|15605284|ref|NP_220070.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328995|gb|AAC68157.1| SWI/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|296437016|gb|ADH19186.1| SWI/SNF family helicase [Chlamydia trachomatis G/11222]
          Length = 1199

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 954  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|90409119|ref|ZP_01217240.1| Snf2 family protein [Psychromonas sp. CNPT3]
 gi|90309770|gb|EAS37934.1| Snf2 family protein [Psychromonas sp. CNPT3]
          Length = 1080

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 24/209 (11%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       R+L  + +G            +K  Q          E   +     K
Sbjct: 855  LYESIRITMEAKVRDLLKE-KGMARSRIEFLDALLKLRQACCDPRLVKLEHAKEVKSSAK 913

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN 105
            +  L  ++ +       I++   F + L  ++                       I+ + 
Sbjct: 914  LDFLMNMVSEMVEEGRRILIFSQFATMLTLIEEELIEKGIDFVKLTGQTRDRGAIIERFQ 973

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++P+      + G GLNL    + ++ +  WW+       +E     R  + G  + V
Sbjct: 974  SGEVPIFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA-----VENQATDRAYRIGQDKPV 1027

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            FVY LI + T++E VL     K  + D +
Sbjct: 1028 FVYKLICEQTVEERVLALHARKQKLADSV 1056


>gi|312170918|emb|CBX79177.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 852

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+        + +  K  H  K+  L  ++    A    I++   F + L  +     +
Sbjct: 665 RQICCDPRLLADARAEKVRHSAKLALLREMLHDLLAEDRRILIFSQFTTMLTIIAGELHK 724

Query: 91  GRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R                ++ + +G++P+      + G GLNL    + ++ +  WW+  
Sbjct: 725 ARIPFVTLTGATRDRNEPVRSFQQGEVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPA 783

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 E     R  + G  + VFVY LIA  TI+E ++   + K+ + + +LN 
Sbjct: 784 A-----ENQATDRAWRLGQDKPVFVYKLIAAGTIEEKIVALQQQKADLAEEILND 833


>gi|315499178|ref|YP_004087982.1| snf2-related protein [Asticcacaulis excentricus CB 48]
 gi|315417190|gb|ADU13831.1| SNF2-related protein [Asticcacaulis excentricus CB 48]
          Length = 1107

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 3    QYHKFQ----RELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +     ++   +    +   +       +K  Q+         +   ++    K+
Sbjct: 886  LYDTIRLSLHTQVRKAIAERGLAKSHIIVLDALLKLRQVCCDPSLLKIDGT-EDAPSAKL 944

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNE 106
              L  ++         +I+   F S L  +                        +  +  
Sbjct: 945  DRLMEMVTALAEEGRRLIIFSQFTSMLDLIAARLDKAGLGYGILTGKTQNRKKEVDAFQS 1004

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G  P+      + G GLNL    + ++ +  WW+       +E   + R  + G  + VF
Sbjct: 1005 GDNPIFLISLKAGGTGLNLTS-ADTVILYDPWWNPA-----VEAQAIDRAYRIGQDKPVF 1058

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            VY L A+ TI++ + +    K  +   L +    + + 
Sbjct: 1059 VYRLCAEGTIEDKMDEMKARKQALSHALFDED-ADMVE 1095


>gi|33866892|ref|NP_898451.1| SNF2 helicase-like protein [Synechococcus sp. WH 8102]
 gi|33639493|emb|CAE08877.1| SNF2 helicase homolog [Synechococcus sp. WH 8102]
          Length = 1063

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +        +  Q+ N       E    +       K++
Sbjct: 833  LYSKTVEDTLDAIARAPRGQRHGQVLGLLTRLKQICNHPALALSENAVDDGFLGRSAKLQ 892

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             LE I+++        ++   F      LQ                G   ++    +  +
Sbjct: 893  RLEEILDEVIEAGDRALLFTQFAEWGHLLQSWMQQRWKADVPFLHGGTRKNERQAMVDRF 952

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 953  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1006

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1007 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDVIGSGE 1043


>gi|228996916|ref|ZP_04156549.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
 gi|228762795|gb|EEM11709.1| Helicase, SWF/SNF [Bacillus mycoides Rock3-17]
          Length = 1025

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E    L  + +        +   +  Q+      + ++         K
Sbjct: 802  KLYAAYLAKLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR---GSSAK 858

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L  I+E+       I++   F   L+                       +       
Sbjct: 859  FEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPAFERVELCNR 918

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    Q         R  + G K 
Sbjct: 919  FNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKN 972

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+A  TI+E + +   +K  +   ++ 
Sbjct: 973  TVQVIKLVAHGTIEEKMNELQESKKNLIAEVIE 1005


>gi|319652149|ref|ZP_08006268.1| helicase [Bacillus sp. 2_A_57_CT2]
 gi|317396138|gb|EFV76857.1| helicase [Bacillus sp. 2_A_57_CT2]
          Length = 1072

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 27/214 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      + +          K
Sbjct: 849  KLYAAYLAKLREDTLKHLNKDTLRKNRIRILAGLTRLRQICCHPALFVDGYK---GSSAK 905

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L+ IIE++  +   +++   F   L                        +     + 
Sbjct: 906  FEQLKRIIEESRLSGRRVLIFSQFTKMLDLIGRELALLDLPFFYLDGQIPSAERVEICRR 965

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+         + G GLNL  G + ++ + LWW+       +E     R  + G K 
Sbjct: 966  FNEGERDFFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAADRAHRIGQKN 1019

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  L+++ TI+E + +    K  + + ++++
Sbjct: 1020 TVQVIKLLSRGTIEEKMNELQDKKKNLIEEIIDS 1053


>gi|297748685|gb|ADI51231.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749565|gb|ADI52243.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1202

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 957  QLYSSTLKKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1016

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1017 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1076

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1077 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1130

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1131 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1173


>gi|317968221|ref|ZP_07969611.1| SNF2 family DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 1039

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 32/224 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y K   E    +    +   +    +   K  Q+ N      ++              
Sbjct: 802  KLYSKTVDESLDAIARAPLGQKHGQVLALLTKLKQICNHPALALKQDPADADASFFKEFA 861

Query: 52   -HDEKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKD 97
                K++ LE I+E+        ++   F                +         +  + 
Sbjct: 862  ARSAKVQRLEEILEEVMEAGDRALLFTQFAEWGHLLKAHLEHKWRQEVPFLYGSTSKTER 921

Query: 98   PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  + +      L      + G GLNL    + +     WW+       +E     R
Sbjct: 922  QAMVDRFQDDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDR 975

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G +  V V+  I   +++E + + ++ KS + + ++ + +
Sbjct: 976  AYRIGQQNRVMVHKFITSGSVEERIDRMIKEKSKLAEDIVGSGE 1019


>gi|172057599|ref|YP_001814059.1| non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990120|gb|ACB61042.1| Non-specific serine/threonine protein kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 876

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 26/221 (11%)

Query: 2   KQYH----KFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K Y     K Q E    L   +  +     +   +  Q+      + E+   +     K+
Sbjct: 647 KLYASYLAKLQLETLQHLDETKREDRIKLLAGLTRLRQICCDPALFVEDYTGE---STKL 703

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + L  +IE+       I++   +   LAR+++                 ++      + +
Sbjct: 704 ERLLTLIEEKLAAGHRILIFSQYTKMLARIRERLAAQQRAHFLLTGETPVEDRVALCERF 763

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N G++ L      + G GLNL    + ++ +  WW+    Q         R  + G +  
Sbjct: 764 NAGEVDLFLISLKAGGTGLNL-ATADTVILYDSWWNPAVEQ-----QAADRAHRLGQQSP 817

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V V  L+   TI+E + +    K+T+ D +L+  K + + +
Sbjct: 818 VEVIKLLMTGTIEEKMAELQDRKATMIDAVLSDQKPDILTI 858


>gi|301062656|ref|ZP_07203283.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300443246|gb|EFK07384.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 895

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 3   QYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y K  ++      + +G   +     S  +K  Q+ N    Y     ++E    K + L
Sbjct: 669 LYGKLVQDIRGSILETEGIERKGM-ILSSLMKFKQICNHPDQYLGAGGFEEKESGKFQRL 727

Query: 60  EVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE 106
             I          ++V   F                           + K    I+++  
Sbjct: 728 RDICTTIYEKREKVLVFTQFKEMTQPLHDFLEDVFHGKGLILHGSVAVGKRKKIIEQFQS 787

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +P +     + G GLNL    N ++ F  WW+       +E     R  + G K+ V
Sbjct: 788 PGYVPFMVLSLKAGGIGLNLTE-ANHVIHFDRWWNPA-----VENQATDRAFRIGQKKNV 841

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+  + Q T++E +   L  KS +   ++
Sbjct: 842 VVHKFLTQGTVEEKIDAMLEEKSRLSREVI 871


>gi|308446187|ref|XP_003087115.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
 gi|308262104|gb|EFP06057.1| hypothetical protein CRE_23866 [Caenorhabditis remanei]
          Length = 437

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHD 53
           K Y   +       REL    +G +       S  +K  Q+         ++   + V  
Sbjct: 213 KLYEAVRATMQKNIRELIAA-KGFHRSQIQILSALLKLRQVCCHPSLLQLDQVKNQNVES 271

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQE 103
            K+  L  +++        I++   F + L  +++                 K    I  
Sbjct: 272 AKLDHLLEMVQDMVEEGRKILIFSQFTTMLQLIEEHLKTLNIRNVKLTGQTKKRDEVITA 331

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G IP+      + G GLNL    + ++ +  WW+        E     R  + G  +
Sbjct: 332 FQAGDIPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQASDRAWRIGQDK 385

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFVY LI   +I+E +L   + K+ +   +L+
Sbjct: 386 PVFVYKLITNQSIEEKILALQKNKADLAKSILS 418


>gi|226360675|ref|YP_002778453.1| helicase [Rhodococcus opacus B4]
 gi|226239160|dbj|BAH49508.1| putative helicase [Rhodococcus opacus B4]
          Length = 947

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   ++ +          +   K  Q+ N   ++  +        +    K+
Sbjct: 713 LYRAVVDDMMAQIKDKKGMKRKGAVLAALTKLKQVCNHPAHFLRDGSAVMRRGQHRSGKL 772

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
             +E I++    +    ++   F                        G    K    +  
Sbjct: 773 GLVEDILDSVVADGEKALLFTQFREFGDLVVPYLAERFGTPVPFLHGGVPKQKRDDMVAS 832

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +   P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 833 FQGDDGPPIMMLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQR 886

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V  L+   T++E +   + TK  + DL + 
Sbjct: 887 RDVQVRKLVCVGTLEERIDAMIATKQELADLAVG 920


>gi|315504405|ref|YP_004083292.1| snf2-related protein [Micromonospora sp. L5]
 gi|315411024|gb|ADU09141.1| SNF2-related protein [Micromonospora sp. L5]
          Length = 1136

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   +  Q+ N       +    +    K++ L+
Sbjct: 906  LYRAVVDDMMAKIESSDGIERRGLVLATMTRLKQVCNHPAQLLHDGSALDGRSGKLERLD 965

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
             I+++        ++   +      L+                G    +    +  +   
Sbjct: 966  EIVDEVLAAEEKALLFTQYAEFGGMLRGHLSARTGREVLLLHGGVGKAERDAMVTRFQTP 1025

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  PL      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 1026 QGPPLFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQRRRVQ 1079

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E V   +  K ++   ++ + ++
Sbjct: 1080 VRKFVCAGTVEEKVAAMIADKRSLARSVVGSGEQ 1113


>gi|302869123|ref|YP_003837760.1| SNF2-like protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571982|gb|ADL48184.1| SNF2-related protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1078

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   +  Q+ N       +    +    K++ L+
Sbjct: 848  LYRAVVDDMMAKIESSDGIERRGLVLATMTRLKQVCNHPAQLLHDGSALDGRSGKLERLD 907

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
             I+++        ++   +      L+                G    +    +  +   
Sbjct: 908  EIVDEVLAAEEKALLFTQYAEFGGMLRGHLSARTGREVLLLHGGVGKAERDAMVTRFQTP 967

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  PL      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 968  QGPPLFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQRRRVQ 1021

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E V   +  K ++   ++ + ++
Sbjct: 1022 VRKFVCAGTVEEKVAAMIADKRSLARSVVGSGEQ 1055


>gi|315650529|ref|ZP_07903595.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
 gi|315487184|gb|EFU77500.1| Snf2 family helicase [Eubacterium saburreum DSM 3986]
          Length = 1142

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 21/200 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--A 66
            +++    +  N +     ++  K  Q+        ++   +     K+     +++    
Sbjct: 932  KKILLGDKDYNNKKMIVLAEITKLRQICCDPNLIFDDYSGE---SAKLDTCIDLVKSGIE 988

Query: 67   NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                I++   F+S L                       DK    + ++N     +     
Sbjct: 989  AGHKILLFSQFSSMLDIISKRFEKEKITSFMITGSTPKDKRLTLVNKFNHDDTNVFLISL 1048

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G +I++ +  WW+              R  + G K  V VY LIA+ TI
Sbjct: 1049 KAGGTGLNLT-GADIVIHYDPWWNFAAQ-----NQATDRAHRIGQKNTVTVYRLIAKGTI 1102

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +++   +K  + D +LN
Sbjct: 1103 EERIVKLQESKKDLADRVLN 1122


>gi|312128395|ref|YP_003993269.1| SNF2-like protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778414|gb|ADQ07900.1| SNF2-related protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 1139

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 35/230 (15%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++   G         S   +  Q+        E+         K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSAGFEKSQIKIFSLLTRLRQICCHPKLVFEDYK---GSSGK 973

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ ++K   + + L                +  
Sbjct: 974  LEALKEILQDCLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNS 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPA-----VENQATARAHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--------LKKETIHV 205
             V  + +I +N+I+E +L   + K  + D L+ A         K+E + +
Sbjct: 1088 VVQSFKIITKNSIEEKILALQQKKKDLFDSLIEASQSFIGKFSKEEILEL 1137


>gi|54022998|ref|YP_117240.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54014506|dbj|BAD55876.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 956

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 26/217 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   L+     A   A      +  Q+ N   ++  +             K+
Sbjct: 722 LYQAVVDDMLVKLRSAKGMARKGAVLGALTRLKQVCNHPAHFLGDGSPVLHRGRHRSGKL 781

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
             +E +++    +    ++   F                        G T       ++ 
Sbjct: 782 ALVEDVLDTVVADGEKALLFTQFREFGDLLAPYLSERFGAPIPFLHGGVTKKNRDTMVER 841

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  G   P++     + G GL L    N +V    WW+       +E     R  + G +
Sbjct: 842 FQSGDGPPVMLLSLKAGGTGLTLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQR 895

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R V V  L+  +TI+E + + +  KS + DL ++A +
Sbjct: 896 RDVQVRKLVCVDTIEERIDEMITGKSRLADLAVDAGE 932


>gi|166154770|ref|YP_001654888.1| helicase [Chlamydia trachomatis 434/Bu]
 gi|166155645|ref|YP_001653900.1| helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336044|ref|ZP_07224288.1| helicase [Chlamydia trachomatis L2tet1]
 gi|165930758|emb|CAP04255.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis 434/Bu]
 gi|165931633|emb|CAP07209.1| putative helicase (SWF/SNF family) [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1199

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 25/223 (11%)

Query: 2    KQYH-KFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E     +   +  +   +  Q+ +   VY+ + + +K    
Sbjct: 954  QLYSSTLEKEKCQIQQLEKEEDPASVNYLHVFALLNQLKQICDHPAVYFKDPESYKNHSS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         + A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIALYLEEHAIEYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|262377834|ref|ZP_06071049.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262307224|gb|EEY88372.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 1115

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHDE 54
            K Y   +  +  ++      +G            +K  Q+         +     + +  
Sbjct: 889  KLYEAVRATMQANIQKIVAEKGFKRSQIQILDALLKLRQVCCHPSLLKLDSVKTGQAYSA 948

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEW 104
            K++ L  ++         I++   F S L  +++                 K    I  +
Sbjct: 949  KLEQLMDMVVPMVEEGRKILIFSQFTSMLELIEQQLYHAEIGYVKLTGKTKKRDEVITAF 1008

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G++P+      + G GLNL    + ++ +  WW+        E     R  + G  + 
Sbjct: 1009 QSGQVPVFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQASDRAWRIGQDKP 1062

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VFVY LI   +I+E ++   + K+ +   +L+
Sbjct: 1063 VFVYKLITNKSIEEKIIALQQNKAELAQSILS 1094


>gi|218440726|ref|YP_002379055.1| non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7424]
 gi|218173454|gb|ACK72187.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            7424]
          Length = 1048

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAV-YYDEEKHWKEVHDEKIKAL 59
             Y K   +    ++            +  ++  Q+ N    YY E          K+  L
Sbjct: 815  LYQKLVDDSLAKIEETTGIQRRGLILTLLMQLKQVCNHPAQYYKENSLDSAQRSGKLLRL 874

Query: 60   EVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE 106
            E ++E+        ++   F              L R            +    I  +  
Sbjct: 875  EEMLEELVDEGDRALIFTQFAEWGKLLQPYLTKKLGRQVLFLYGATPRQQRQEMIDRFQN 934

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P+      + G GLNL    N +     WW+       +E     R  + G K+ 
Sbjct: 935  DPAAPPIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKQN 988

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  I   T++E +   + +K  + +  ++A +
Sbjct: 989  VQVHKFICTGTLEEKINDMIESKKQLAEQTVDAGE 1023


>gi|158312364|ref|YP_001504872.1| non-specific serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158107769|gb|ABW09966.1| Non-specific serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 617

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 23/210 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y +     + +  G  IE      +      Q+ N    Y  E         K     
Sbjct: 386 RLYREAVDRAFTEGLGAGIERSGRVLALLTALKQICNHPAQYLREDTATPGRSGKFDRAT 445

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARL------------QKAFPQGRTLDKDPCTIQEWN- 105
            ++ +       ++V   + +    L                  G ++ +    +  +  
Sbjct: 446 EMLSEVVEQDDRVLVFTQYRAMGKLLSRYLGTALGVGLVPFLHGGLSMQRRDELVHAFQE 505

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P+L     + G GLNL    + ++ +  WW+       +E     R  + G  R 
Sbjct: 506 DDDAPPVLLLSLRAAGFGLNLTR-ASHVMHYDRWWNPA-----VEEQATDRAHRIGQSRT 559

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + VY L+   TI++ + Q    K  + +++
Sbjct: 560 LNVYTLVTGGTIEDHIAQMHENKRGVAEIV 589


>gi|213692059|ref|YP_002322645.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523520|gb|ACJ52267.1| SNF2-related protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 464

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL     + A N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 264 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 323

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 324 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHE-QGVLEEWRNGRVPLLAAHPQAA 381

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  +++     R    R  + G KR V V+ L+  NT+D  
Sbjct: 382 KYGLNIQDGGHEIVWTSLPWSFDDY-----RQACDRLHRQGQKRTVRVHRLLESNTVDRR 436

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 437 KLDVLTGRMMLHEAVMDAVEGETTGI 462


>gi|167629617|ref|YP_001680116.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592357|gb|ABZ84105.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
          Length = 1006

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 29/221 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKA 58
            Y    +     ++     A      S   +  QL N      +E     +     K++ 
Sbjct: 770 LYESVLQAAMEKIEESTGIARRGAILSTLTQLKQLCNHPTLLLKEGKASVLRGRSHKVER 829

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  ++E+        +V   +      L++               G    +    I+ + 
Sbjct: 830 LVEMVEELRQEGERCLVFTQYVETGHLLKETLEAALGEEVLFLHGGTPASQREKMIERFQ 889

Query: 106 EGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +          +      + G GLNL    N +     WW+       +E     R  + 
Sbjct: 890 QSDPSPGKGCGVFLLSLKAGGTGLNLTA-ANHVFHVDRWWNPA-----VENQATDRAYRI 943

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  R V V+  I   T++E + + +  K  + + ++   ++
Sbjct: 944 GQSRNVHVHKFITLGTLEERIDEMIERKQGLSEEVIGGGEQ 984


>gi|89097017|ref|ZP_01169908.1| helicase, SWF/SNF family protein [Bacillus sp. NRRL B-14911]
 gi|89088397|gb|EAR67507.1| helicase, SWF/SNF family protein [Bacillus sp. NRRL B-14911]
          Length = 1061

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      + +          K
Sbjct: 838  KLYAAYLAKLRHDTLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDGYK---GSSAK 894

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQE 103
             + L  II+++  +   +++   F   L  +                    ++       
Sbjct: 895  YEQLLQIIKESRLSGRRVLIFSQFTKMLDMIGRELARQGIGFFYLDGQTPSEERVKLCGR 954

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+         + G GLNL  G + ++ + LWW+       +E     R  + G + 
Sbjct: 955  FNSGEHDFFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VENQAADRAYRMGQRH 1008

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+A+ TI+E + +    K  + + ++ 
Sbjct: 1009 NVQVIKLLARGTIEEKMNELQDKKRNLIEEVIE 1041


>gi|15618744|ref|NP_225030.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|16752203|ref|NP_445571.1| Snf2/Rad54 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242195|ref|NP_877136.1| SNF protein [Chlamydophila pneumoniae TW-183]
 gi|4377149|gb|AAD18973.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae CWL029]
 gi|7189947|gb|AAF38809.1| helicase, Snf2/Rad54 family [Chlamydophila pneumoniae AR39]
 gi|33236706|gb|AAP98793.1| SNF protein [Chlamydophila pneumoniae TW-183]
          Length = 1215

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 2    KQYH---KFQRELYCDLQGENIEAFN---SASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y    + ++     L+     A N     +      Q+ +   V++ +   +K     
Sbjct: 958  KLYMATLQREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESG 1017

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K  A   ++++       ++V   +   +  +         + A  QG++L++       
Sbjct: 1018 KWNAFVKLLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETF 1077

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1078 TTDPNCQVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKN 1131

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y LI ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1132 TVFIYKLITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|322411161|gb|EFY02069.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1030

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + + + +     D+    IE     S   +  Q+ +    + +     +    K+++L  
Sbjct: 816  QMHDQIRTASDADINRRKIE---ILSGITRLRQICDTPSLFMDY----DGESGKLESLRT 868

Query: 62   II--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++   K N    ++   F   L   +                   ++     + +N G  
Sbjct: 869  LLLQIKENGHRALIFSQFRGMLDLAKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSK 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL  G + +V   LWW+            ++R  + G +  V VY 
Sbjct: 929  DVFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 983  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1014


>gi|111018558|ref|YP_701530.1| helicase [Rhodococcus jostii RHA1]
 gi|110818088|gb|ABG93372.1| probable helicase [Rhodococcus jostii RHA1]
          Length = 961

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   ++ +          +   K  Q+ N   ++  +        +    K+
Sbjct: 727 LYRAVVDDMMAQIKDKKGMKRKGAVLAALTKLKQVCNHPAHFLRDGSAVMRRGQHRSGKL 786

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
             +E I++    +    ++   F                        G +  K    +  
Sbjct: 787 GLVEDILDSVVADGEKALLFTQFREFGDLVTPYLAERFGTPVPFLHGGVSKQKRDDMVAS 846

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +   P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 847 FQGDDGPPIMMLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRAFRIGQR 900

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V  L+   T++E +   + TK  + DL + 
Sbjct: 901 RDVQVRKLVCVGTLEERIDAMIATKQELADLAVG 934


>gi|66395514|ref|YP_239930.1| ORF006 [Staphylococcus phage 42E]
 gi|215401142|ref|YP_002332397.1| putative helicase [Staphylococcus phage phiSauS-IPLA35]
 gi|62636007|gb|AAX91118.1| ORF006 [Staphylococcus phage 42E]
 gi|215260493|gb|ACJ64623.1| gp34 [Staphylococcus phage phiSauS-IPLA35]
          Length = 455

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +    +E+HD+K++ LE
Sbjct: 257 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAV-YTDNGDVREIHDKKLEKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIMHHIMTDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|227548395|ref|ZP_03978444.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079533|gb|EEI17496.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1039

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y    R+   +L+     A      +   +  Q+ N   ++  +     +       K+
Sbjct: 807  LYTALVRDAQAELEEREGMARKGMVLATITRIKQICNHPAHFLGDGSAVTLKGKHRSGKV 866

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
              L  ++ +   +   +++   + +            L         G + D     +  
Sbjct: 867  AMLMELLGEAINSEQRVLIFTQYKAFGALLQPYLSERLGEPVPFLHGGVSKDARDAMVDS 926

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   G    +     + G GLNL    ++++    WW+       +E     R  + G  
Sbjct: 927  FQSVGGPRAMLLSLKAGGTGLNLTA-ASVVIHLDRWWNPA-----VENQATDRAYRIGQD 980

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY +I + T++E +   L  K  +   ++   +     +
Sbjct: 981  KNVTVYKMITRGTLEESIQDVLDGKMHLAGTVVGEGEGWITEL 1023


>gi|222528487|ref|YP_002572369.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
 gi|222455334|gb|ACM59596.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
            bescii DSM 6725]
          Length = 1139

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 27/214 (12%)

Query: 2    KQYHKF----QRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F    ++E+  ++   G         S   +  Q+        E+         K
Sbjct: 917  KIYKQFLVSAKKEIEKEIDSVGFEKSQIKIFSLLTRLRQICCHPKLVFEDYK---GSSGK 973

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++AL+ I++    +   +I+   + S L+ ++K   + + L                +  
Sbjct: 974  MEALKEILQDSLESGHRVIIYSQWTSMLSIIKKMLDKEKILYFYLDGATKAEDRVEMVNR 1033

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLN+  G ++++ F  WW+       +E     R  + G K 
Sbjct: 1034 FNSGERNVFLLSLKAGGFGLNIT-GADVVIHFDAWWNPA-----VENQATARAHRLGQKN 1087

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  + +IA+N+I+E +L   + K  + D L+ A
Sbjct: 1088 VVQSFKIIAKNSIEEKILALQQKKKDLFDSLIEA 1121


>gi|331003253|ref|ZP_08326760.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330412906|gb|EGG92286.1| hypothetical protein HMPREF0491_01622 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1137

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--A 66
            +E+    +  N       S+  K  Q+        E          K++    +++    
Sbjct: 927  KEVLEGDKEYNSSKMIILSEITKLRQICCDPGLIFENYS---GGAAKLETCVDLVKSGIE 983

Query: 67   NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                I++   F S L  ++                 + +K    + ++N     +     
Sbjct: 984  AGHKILLFSQFTSMLDIIEKRFKEENISSYMITGSTSKEKRIQLVNDFNNDDTNVFLISL 1043

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL  G +I++ +  WW+              R  + G K  V VY LI + TI
Sbjct: 1044 KAGGTGLNL-VGADIVIHYDPWWNFAAQ-----NQATDRAHRIGQKNNVTVYRLITKGTI 1097

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +++   +K  + D +LN
Sbjct: 1098 EERIVKLQESKKDLADRVLN 1117


>gi|254445212|ref|ZP_05058688.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259520|gb|EDY83828.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 917

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 22/209 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +   EL  DL+            +  ++  Q+ N       +  +K     K   L+
Sbjct: 688 LYKRTVEELAKDLREVEGIQRRGLVLTYLMRFKQICNHPSQALGDNGYKPDASGKFTRLQ 747

Query: 61  VIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
            + E        +++   F                R       G  + +    +  +   
Sbjct: 748 ELCEDIAARQEKVLIFTQFREMTAPIAQHLATIFGREGLVLHGGTPVAQRKALVDSFQSP 807

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GL L    + ++ F  WW+       +E     R  + G K+ V 
Sbjct: 808 DGPPFFVLSLKAGGSGLTLTA-ASHVIHFDRWWNPA-----VENQATDRAYRIGQKKNVL 861

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+  I++ TI+E V   +++K  +   LL
Sbjct: 862 VHKFISRGTIEEKVDTLIQSKLALSTELL 890


>gi|160935631|ref|ZP_02083006.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
 gi|158441375|gb|EDP19085.1| hypothetical protein CLOBOL_00521 [Clostridium bolteae ATCC BAA-613]
          Length = 1075

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 21/186 (11%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
                 ++ ++  Q+        +          K++    ++ +  A    I++   F S
Sbjct: 877  KLQILAELMRLRQICCDPRLCYDNYR---GSSAKLETCMDLVRRGVAGGHKILLFSQFTS 933

Query: 80   DLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             L            +        + ++    + ++ + ++P+      + G GLNL    
Sbjct: 934  MLDIIHTRFEKEGIMSHMLTGATSKEERIRLVGDFGKDEVPVFLISLKAGGTGLNLTA-A 992

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            +I++ +  WW++             R  + G  + V VY LI +NTI+E +L+    KS 
Sbjct: 993  DIVIHYDPWWNVAAQ-----NQATDRTHRIGQDKQVTVYKLITRNTIEENILKLQEAKSH 1047

Query: 190  IQDLLL 195
            + D ++
Sbjct: 1048 LADAVV 1053


>gi|238060401|ref|ZP_04605110.1| non-specific serine/threonine protein kinase [Micromonospora sp.
           ATCC 39149]
 gi|237882212|gb|EEP71040.1| non-specific serine/threonine protein kinase [Micromonospora sp.
           ATCC 39149]
          Length = 795

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 22/214 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++            +   +  Q+ N       +         K+  LE
Sbjct: 565 LYQAVVDDMLARIESSDGIERRGLVLAAMTRLKQVCNHPAQLLRDGSALTGRSGKLARLE 624

Query: 61  VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I+++        ++   +                R       G         +  +  +
Sbjct: 625 EILDEVLAAGEKALLFTQYAEFGGMLRGHLSARFGREVLFLHGGVGKADRDAMVTRFQSD 684

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              PL      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 685 AGPPLFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQRRRVQ 738

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V   +   T++E V   +  K ++   ++   ++
Sbjct: 739 VRKFVCAGTLEEKVAAMIAEKRSLAASVVGTGEQ 772


>gi|261420703|ref|YP_003254385.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|319768373|ref|YP_004133874.1| SNF2-related protein [Geobacillus sp. Y412MC52]
 gi|261377160|gb|ACX79903.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|317113239|gb|ADU95731.1| SNF2-related protein [Geobacillus sp. Y412MC52]
          Length = 924

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ +    Y +E+  +++     K++ 
Sbjct: 693 LYEQLVNDTLERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVERSHKLEK 752

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +IE+   N    ++   +      +Q+               G         + E+ 
Sbjct: 753 LIELIEQIRTNDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLHGGVPKQTRDRMVDEFQ 812

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 813 AKKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 866

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + + L  K  + DL+   
Sbjct: 867 HVHKLITIGTIEEKIDEMLEQKQALADLITEG 898


>gi|269302622|gb|ACZ32722.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1215

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 2    KQYH---KFQRELYCDLQGENIEAFN---SASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y    + ++     L+     A N     +      Q+ +   V++ +   +K     
Sbjct: 958  KLYMATLQREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESG 1017

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K  A   ++++       ++V   +   +  +         + A  QG++L++       
Sbjct: 1018 KWNAFVKLLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETF 1077

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1078 TTDPNCQVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQKN 1131

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y LI ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1132 TVFIYKLITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|297583264|ref|YP_003699044.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141721|gb|ADH98478.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 1102

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
             G         +   +  QL      + E+   +     K+  L+ ++     N   +++
Sbjct: 899  DGFQESRMKILAGLTRLRQLCCHPSLFIEDYKGE---SGKLNDLKELVANAVENGRRLLI 955

Query: 74   AYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
               F+S L  ++                          + +N+G+  L      + G GL
Sbjct: 956  FSQFSSMLTMMKDVLEEEGYSLFYLDGQTPGKDRVDMAERFNQGEKELFLISLKAGGTGL 1015

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G +++V + LWW+       +E     R  + G K+ V V  ++++ TI+E +   
Sbjct: 1016 NL-PGADLVVLYDLWWNPA-----VEEQAAGRAHRMGQKKVVQVIRMVSEGTIEEKIHAL 1069

Query: 184  LRTKSTIQDLLLN 196
             + K  + D ++ 
Sbjct: 1070 QQRKRELIDTVIQ 1082


>gi|320458171|dbj|BAJ68792.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 460

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL     + A N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTAANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIIGAADG-PVLVFYQFTDELERMRARFPGMREVHE-QGVLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  +++     R    R  + G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDY-----RQACDRLHRQGQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++A++ ET  +
Sbjct: 433 KLDVLTGRMMLHEAVMDAVEGETTGI 458


>gi|254443940|ref|ZP_05057416.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
 gi|198258248|gb|EDY82556.1| SNF2 family N-terminal domain protein [Verrucomicrobiae bacterium
            DG1235]
          Length = 1069

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 73/186 (39%), Gaps = 19/186 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            E FN  +  ++  Q+            + +V   K++ L  ++ +       +++   F 
Sbjct: 872  ERFNILASLLRLRQICCHPALISP--EYAKVRSAKLEGLVDLVSELQEEGHKVLIFSQFV 929

Query: 79   SDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
              L  +         +     G+T +++    Q  N+  +        + G GLNL    
Sbjct: 930  EMLKIISESLKGIDCKHLTLTGQTKNREELVDQFQNDETVTAFLLSLRAAGSGLNLTA-A 988

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +V +  WW+       +E   + R  + G K  V  Y LIA++++++ +      K +
Sbjct: 989  SYVVLYDPWWNPA-----VEAQAIDRTHRIGQKNTVNAYRLIAKDSVEQKIQSLQVKKES 1043

Query: 190  IQDLLL 195
            + + ++
Sbjct: 1044 LANEIV 1049


>gi|283469596|emb|CAQ48807.1| SNF2 family N-domain protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 452

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +    +E+HD+K++ LE
Sbjct: 254 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDNGDVREIHDKKLEKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      +++++  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|330889124|gb|EGH21785.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 914

 Score =  121 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALASGVLDG 885


>gi|255037622|ref|YP_003088243.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
 gi|254950378|gb|ACT95078.1| Non-specific serine/threonine protein kinase [Dyadobacter fermentans
            DSM 18053]
          Length = 1261

 Score =  121 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 21/211 (9%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  F+     ++      +G N  +F      +K  Q+ +       ++ +     + 
Sbjct: 1039 KVYDTFRERYRQEIAEKLATEGLNKSSFLILEALLKLRQICDSPSILSGDEDFGNESAKL 1098

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNE 106
             +    I E A+   I++   F   L  ++K          +  G+T+D+     +  N+
Sbjct: 1099 EEITREIEENASNHKILIFSQFLGMLDLIRKHLEKMNIPYEYLDGQTVDRAGRVNRFQND 1158

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    + +     WW+       +ER  + R  + G  R VF
Sbjct: 1159 DTCRVFLMSLKAGGVGLNLTE-ADYVYLVDPWWNPA-----VERQAIDRTHRIGQTRKVF 1212

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Y +I ++TI+E +L   + K  + + L+  
Sbjct: 1213 AYKMICKDTIEEKILLLQQRKQDLAEDLVGG 1243


>gi|323692122|ref|ZP_08106366.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
            WAL-14673]
 gi|323503809|gb|EGB19627.1| hypothetical protein HMPREF9475_01229 [Clostridium symbiosum
            WAL-14673]
          Length = 1079

 Score =  121 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 26/211 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y     +L   L+ +   A         ++  +  QL        E  + +     K+
Sbjct: 857  ELYRAAALKLRQSLEEDEKTAETSGKFQILAELTRLRQLCCDPSLCFERYNGE---SAKL 913

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            +    ++     +   I++   F S L  +     +            T ++    +  +
Sbjct: 914  ETCVSLLLSAAESGHKILLFSQFASMLGIIGNRLKKEGIPFYLLTGSTTKEERNKMVNAF 973

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  ++P+      + G GLNL    +I++ +  WW++             R  + G ++ 
Sbjct: 974  HRDQVPVFLISLKAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRAHRIGQEKQ 1027

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY LI ++TI+E +L     K  + D ++
Sbjct: 1028 VTVYKLIMKDTIEENILNLQEAKKNLADQIV 1058


>gi|270285639|ref|ZP_06195033.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270289648|ref|ZP_06195950.1| SNF2 family helicase [Chlamydia muridarum Weiss]
 gi|301337035|ref|ZP_07225237.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1199

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 90/223 (40%), Gaps = 25/223 (11%)

Query: 2    KQY-HKFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E+    +   +  +   +  Q+ +   +Y+ + + +K    
Sbjct: 954  QLYASTLKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDHPAIYFKDPESYKNYAS 1013

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         Q A  QG++ ++     +
Sbjct: 1014 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIISLYLEEQNIQYALVQGKSQNRKEEIDR 1073

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1074 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1127

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1128 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1170


>gi|323438429|gb|EGA96184.1| phage helicase [Staphylococcus aureus O11]
          Length = 452

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y ++   + +HD+K++ LE
Sbjct: 254 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAV-YTDDGDVRGIHDKKLEKLE 312

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 313 EIIEESQGQPILLFYNFKHDKERILERFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 371

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V F L W LE +Q         R  + G      +++L+  NTID+ V
Sbjct: 372 HGLNLQQGGHIIVSFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHLMTDNTIDQRV 426

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 427 YKALQNKELTQEELMKAIKARI 448


>gi|257791730|ref|YP_003182336.1| Non-specific serine/threonine protein kinase [Eggerthella lenta DSM
            2243]
 gi|317487799|ref|ZP_07946392.1| SNF2 family domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325831768|ref|ZP_08164957.1| SNF2 family N-terminal domain protein [Eggerthella sp. HGA1]
 gi|257475627|gb|ACV55947.1| Non-specific serine/threonine protein kinase [Eggerthella lenta DSM
            2243]
 gi|316913074|gb|EFV34590.1| SNF2 family domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486437|gb|EGC88887.1| SNF2 family N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1089

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 30/217 (13%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVH 52
            + Y     + +  L       N + F+       ++  K  QL        E       H
Sbjct: 863  RLYAAHEQQLRDALTLQKNNRNNKQFHERKVEVLAELTKLRQLCCDPRLLYENYA---GH 919

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCT 100
              K+ A+  I+E         +V   F S L+                       +    
Sbjct: 920  AAKLDAIAEIVESAMDAGEKTLVFSQFTSFLSLIAEVLDAHGVPYFTITGTTPKKRRLDL 979

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  +N+   P+      + G GLNL  G +++V    WW+              R  + G
Sbjct: 980  VNAFNDDDTPVFLVSLKAGGTGLNLT-GASVVVHADPWWNAAAQ-----NQATDRAHRIG 1033

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V V+ +IA++T++E +L     K+ + D ++ A
Sbjct: 1034 QTQVVSVHKVIAKDTVEERILHLQDAKTDLADQVIGA 1070


>gi|300781455|ref|ZP_07091309.1| chromodomain helicase [Corynebacterium genitalium ATCC 33030]
 gi|300533162|gb|EFK54223.1| chromodomain helicase [Corynebacterium genitalium ATCC 33030]
          Length = 1006

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y      +  +L+     A          +  Q+ N   +Y  +             K+
Sbjct: 773 LYTALVNAMQKELESRTGMARKGLVLSTITRIKQICNHPAHYQADGSPVTDKGKHRSGKV 832

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
             L  ++++       ++V   + +            L         G +  +    ++ 
Sbjct: 833 AMLMELLDQAIETDQRVLVFTQYKAFGDILQPYLSDRLGHEIPFLHGGLSKTQRDTMVER 892

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           + +      +     + G GLNL    ++++    WW+       +E     R  + G  
Sbjct: 893 FQDPNGPRAMILSLRAGGTGLNLTA-ASMVIHMDRWWNPA-----VENQATDRAYRIGQN 946

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R V VY +I + T++E +   L  K  +   ++   +     +
Sbjct: 947 RNVQVYKMITRGTMEESIQDILDGKLKLAGAVVGEGEGWITEL 989


>gi|295699426|ref|YP_003607319.1| SNF2-related protein [Burkholderia sp. CCGE1002]
 gi|295438639|gb|ADG17808.1| SNF2-related protein [Burkholderia sp. CCGE1002]
          Length = 1172

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 32/219 (14%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKE------ 50
             Y       Q+++   +  + +   +       +K  Q+            + +      
Sbjct: 931  LYETVRTAMQQKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTASGFTDGAATGG 990

Query: 51   ----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDK 96
                +   K+  L  ++ +       +++   F   LA + +                  
Sbjct: 991  GERAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLALIAQALDEAAIPYAMLTGDTTD 1050

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++ + +G++PL      + G GLNL    + ++ +  WW+        E     R 
Sbjct: 1051 RVTPVERFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRA 1104

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1105 HRLGQDKPVFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1143


>gi|224368240|ref|YP_002602403.1| SNF2-related helicase [Desulfobacterium autotrophicum HRM2]
 gi|223690956|gb|ACN14239.1| SNF2-related helicase [Desulfobacterium autotrophicum HRM2]
          Length = 903

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y  F ++L   L+  +          S  VK  Q+ N    Y     +      K   L
Sbjct: 674 LYMDFVKKLADKLECSDPGIQRKGLVLSALVKFKQICNHPDQYLGTGDFIPKESGKFTRL 733

Query: 60  EVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN- 105
             I    +     ++V   F                +          + K    I+E+  
Sbjct: 734 MEICATIHAKRERVLVFTQFKEMVAPLAEFLETVFHQKGHIIHGSLNVKKRHQAIEEFQG 793

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  IP +     + G GLNL    N ++ F  WW+       IE     R  + G  R V
Sbjct: 794 KAYIPFMVISLKAGGTGLNLTR-ANHVIHFDRWWNPA-----IENQATDRAFRIGQTRGV 847

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+  I + TI+E +   +  K  + + +++
Sbjct: 848 LVHKFITRGTIEEKIDLMIEKKKALTNQIIS 878


>gi|323486739|ref|ZP_08092059.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
            WAL-14163]
 gi|323399958|gb|EGA92336.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
            WAL-14163]
          Length = 1059

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 26/211 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y     +L   L+ +   A         ++  +  QL        E  + +     K+
Sbjct: 837  ELYRAAALKLRQSLEEDEKTAETSGKFQILAELTRLRQLCCDPSLCFERYNGE---SAKL 893

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            +    ++     +   I++   F S L  +     +            T ++    +  +
Sbjct: 894  ETCVSLLLSAAESGHKILLFSQFASMLGIIGNRLKKEGIPFYLLTGSTTKEERNKMVNAF 953

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  ++P+      + G GLNL    +I++ +  WW++             R  + G ++ 
Sbjct: 954  HRDQVPVFLISLKAGGTGLNLTA-ADIVIHYDPWWNVAAQ-----NQATDRAHRIGQEKQ 1007

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY LI ++TI+E +L     K  + D ++
Sbjct: 1008 VTVYKLIMKDTIEENILNLQEAKKNLADQIV 1038


>gi|300778365|ref|ZP_07088223.1| Snf2 family protein [Chryseobacterium gleum ATCC 35910]
 gi|300503875|gb|EFK35015.1| Snf2 family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1113

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y  +++EL   +        N  + +  +   +  Q+ N  V   E    +     +I
Sbjct: 890  KIYDAYEKELREFVAANDDDDLNKNSMHVLTGLTRLRQICNSPVLMKEGYSGENAVKIEI 949

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEG 107
               E I+ K+    I+V   F   L  ++           +  G+T D+        N  
Sbjct: 950  L-TEQILGKSKDHKILVFSQFVGMLDLIKAELEQHNIGYEYLTGQTKDRGEKVTHFQNNE 1008

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I +      + G GLNL    + +     WW+        E   + R  + G  + V  
Sbjct: 1009 DIRVFLISLKAGGVGLNLTQ-ADYIYLVDPWWNPAA-----ENQAIDRSYRIGQTKNVIA 1062

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +I  NT++E +L   + K  +   LL
Sbjct: 1063 IRMICSNTVEEKILTLQKKKKQLAQNLL 1090


>gi|302184809|ref|ZP_07261482.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 880

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 652 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 711

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 712 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 771

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 772 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 825

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 826 ARGTVEEKIQRLQREKSALASGVLDG 851


>gi|226313275|ref|YP_002773169.1| hypothetical protein BBR47_36880 [Brevibacillus brevis NBRC 100599]
 gi|226096223|dbj|BAH44665.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 1090

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 2    KQY----HKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + Q+E    L  +G         +   +  Q+      + +E         K
Sbjct: 867  KLYVAYLAQLQQETVKHLYNKGFQKNRIKILAGLTRLRQICCHPALFVKEYD---GGSAK 923

Query: 56   IKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            ++ L  I+ +       +++   F   L  + +                   +       
Sbjct: 924  LEQLFEILGECKNAGKRVLLFSQFTEMLGMIGRELGYHGVPFFYLDGQTPVAERLDLCNR 983

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLN+  G + ++ + LWW+    Q         R  + G K 
Sbjct: 984  FNEGERDLFLMSLKAGGTGLNVT-GADTVILYDLWWNPAVEQ-----QAADRAHRIGQKN 1037

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V V  L+A+ T++E + +  + K  + + ++
Sbjct: 1038 VVQVIRLVAEGTVEEKMYELQQKKKNLIEEII 1069


>gi|330954490|gb|EGH54750.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae Cit
           7]
          Length = 914

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALASGVLDG 885


>gi|15836368|ref|NP_300892.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
 gi|8979209|dbj|BAA99043.1| SWI/SNF family helicase_1 [Chlamydophila pneumoniae J138]
          Length = 1215

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 2    KQYH---KFQRELYCDLQGENIEAFN---SASKTVKCLQLANGA-VYYDEEKHWKEVHDE 54
            K Y    + ++     L+     A N     +      Q+ +   V++ +   +K     
Sbjct: 958  KLYMATLQREKSHIQKLETPEEPATNFLHIFALLNHLKQICDHPAVFFKDPDQYKNYESG 1017

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQE 103
            K  A   ++++       ++V   +   +  +         + A  QG++L++       
Sbjct: 1018 KWNAFVKLLKESLNAGYKVVVFSQYIHMIRIITLYLEEIGIKYASIQGKSLNRKEEIETF 1077

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K 
Sbjct: 1078 TTDPNCQVFVGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----EIQALDRVHRIGQKN 1131

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y LI ++T++E +   +  K  + D ++ +     +H+
Sbjct: 1132 TVFIYKLITEDTLEERIHYLIEKKIRLLDKVIASQDSNILHM 1173


>gi|297531489|ref|YP_003672764.1| SNF2-related protein [Geobacillus sp. C56-T3]
 gi|297254741|gb|ADI28187.1| SNF2-related protein [Geobacillus sp. C56-T3]
          Length = 924

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ +    Y +E+  +++     K++ 
Sbjct: 693 LYEQLVNDTLERAKEASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVERSHKLEK 752

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +IE+   N    ++   +      +Q+               G         + E+ 
Sbjct: 753 LIELIEQIRTNDESCLIFTQYVRMGEMIQELLSDLFDERVLFLHGGVPKQTRDRMVDEFQ 812

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 813 AKKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 866

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V+ LI   TI+E + + L  K  + D++
Sbjct: 867 HVHKLITIGTIEEKIDEMLEQKQALADII 895


>gi|295396955|ref|ZP_06807077.1| Snf2 family helicase [Aerococcus viridans ATCC 11563]
 gi|294974808|gb|EFG50513.1| Snf2 family helicase [Aerococcus viridans ATCC 11563]
          Length = 1051

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 21/205 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L  D            +   +  Q+         +   +     K +  +++++
Sbjct: 832  KKIQDQLNNDSSNAGQTHMELLAGITRLRQICCHPRLVKNDYTGQ---SGKFEYFKIMLK 888

Query: 65   K--ANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK-DPCTIQEWNEGKIPLL 112
            +   +   ++V   F S L  +               G+T  K     + E+N G   + 
Sbjct: 889  RAIQSGRKVLVFSQFTSMLDVMSEYLAEEGIDYYMMTGQTNKKIRQEQVDEFNTGDKSVF 948

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL  G + +  + LWW+       +E   + R  + G K  V V   I 
Sbjct: 949  LISLRAGGVGINLT-GADTIFLYDLWWNPA-----VEEQAIGRAHRIGQKNDVEVVRFIT 1002

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI++ + +    K  + + L + 
Sbjct: 1003 EGTIEQRIAELQEEKRYLFEQLFDD 1027


>gi|257058201|ref|YP_003136089.1| SNF2-related protein [Cyanothece sp. PCC 8802]
 gi|256588367|gb|ACU99253.1| SNF2-related protein [Cyanothece sp. PCC 8802]
          Length = 1047

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 24/216 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDE---KI 56
            + Y K       +L+ +          S  VK  Q+ N    + +EK     H       
Sbjct: 813  ELYQKLVDSSLEELEDKTGIQRQGLILSLLVKLKQICNHPAQFLKEKQLNFPHRSGKLMR 872

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +          ++   F+              ++       G   ++    I  + 
Sbjct: 873  LEEMLEELIEEGDRALIFTQFSEWGKLLQPYLMAKFSQEVLFLHGGTRREQRQVMIDRFQ 932

Query: 106  E--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   L      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 933  NAPDGPQLFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKR 986

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+  +   T+++ + + L TK  + +  ++A +
Sbjct: 987  NVQVHKFVCTGTLEDKINEMLETKKQLAEQTVDAGE 1022


>gi|15835457|ref|NP_297216.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163332|gb|AAF73609.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1202

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 90/223 (40%), Gaps = 25/223 (11%)

Query: 2    KQY-HKFQREL--YCDLQGEN----IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHD 53
            + Y    ++E      L+ E+    +   +  +   +  Q+ +   +Y+ + + +K    
Sbjct: 957  QLYASTLKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDHPAIYFKDPESYKNYAS 1016

Query: 54   EKIKALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQ 102
             K  A   ++  +  +   ++V   +   +  +         Q A  QG++ ++     +
Sbjct: 1017 GKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIISLYLEEQNIQYALVQGKSQNRKEEIDR 1076

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              N+    +      + G G+NL   GN+++ +  WW+  +     E   + R  + G K
Sbjct: 1077 FSNDPNCRVFIGSLLAAGTGINLTA-GNVVIMYDRWWNPAK-----ENQALDRVHRIGQK 1130

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              VF+Y L+ ++T++E +   +  K  + + +        +HV
Sbjct: 1131 NTVFIYKLVTEDTLEEHIHYLIEKKMRLLNQVTTTQDSNILHV 1173


>gi|67924074|ref|ZP_00517522.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854073|gb|EAM49384.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 1045

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y    +++   L+            S  ++  Q+ N    +  +   +      K++ L
Sbjct: 814  LYEAVVKDVLEKLEDTEGIQRKGLILSTLLRLKQICNHPRQFLQDNSDFIPNRSHKLERL 873

Query: 60   EVIIEKA--NAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWNE 106
              ++E+        ++   F              L         G    K    I ++ +
Sbjct: 874  GEMLEEVIAEGDSFLIFTQFTEIGEALKTYLKQTLYYNTYYIHGGTNRQKRQQMITQFQD 933

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P         + G G+ L    N +  F  WW+       +E     R  + G K+ 
Sbjct: 934  QDTPPSAFILSLKAGGVGITLTK-ANHVFHFDRWWNPA-----VEEQATDRAFRIGQKKN 987

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VFV+  +   TI+E +   +  K  +   ++ + +
Sbjct: 988  VFVHKFVTLGTIEERIDVMIEDKKKMASAIVGSDE 1022


>gi|218245175|ref|YP_002370546.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            8801]
 gi|218165653|gb|ACK64390.1| Non-specific serine/threonine protein kinase [Cyanothece sp. PCC
            8801]
          Length = 1047

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 24/216 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDE---KI 56
            + Y K       +L+ +          S  VK  Q+ N    + +EK     H       
Sbjct: 813  ELYQKLVDSSLEELEDKTGIQRQGLILSLLVKLKQICNHPAQFLKEKQLNFPHRSGKLMR 872

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +          ++   F+              ++       G   ++    I  + 
Sbjct: 873  LEEMLEELIEEGDRALIFTQFSEWGKLLQPYLMAKFSQEVLFLHGGTRREQRQVMIDRFQ 932

Query: 106  E--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   L      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 933  NAPDGPQLFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKR 986

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+  +   T+++ + + L TK  + +  ++A +
Sbjct: 987  NVQVHKFVCTGTLEDKINEMLETKKQLAEQTVDAGE 1022


>gi|209521910|ref|ZP_03270580.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
 gi|209497652|gb|EDZ97837.1| Non-specific serine/threonine protein kinase [Burkholderia sp. H160]
          Length = 1162

 Score =  120 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 32/219 (14%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDE----------EK 46
             Y       Q+++   +  + +   +       +K  Q+                     
Sbjct: 921  LYETVRTAMQQKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTASGITDGAAASG 980

Query: 47   HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDK 96
              + +   K+  L  ++ +       +++   F   LA +                    
Sbjct: 981  GERAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLALIAKALDEAAIPYAMLTGDTTD 1040

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++ + +G++PL      + G GLNL    + ++ +  WW+        E     R 
Sbjct: 1041 RVTPVERFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRA 1094

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + VFVY LIA  +I+E +++    K+ + D +L
Sbjct: 1095 HRLGQDKPVFVYKLIAAGSIEEKIVELQEHKAGLADSIL 1133


>gi|255038325|ref|YP_003088946.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254951081|gb|ACT95781.1| Non-specific serine/threonine protein kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 982

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 20/213 (9%)

Query: 2   KQYHKFQ---RELYCD-LQGENIEAFN--SASKTVKCLQLANGAVYY-DEEKHWKEVHDE 54
           K Y + +   R L    +  E +            +  QLAN  V    E  H     ++
Sbjct: 761 KAYEEAKAYYRNLILQSIDSEGMSKSQLVVLQGLTRLRQLANHPVMVDPEYAHDSGKFED 820

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQ-------KAFPQGRTLDKDPCTIQEWNEG 107
            +  L+ ++ + +   I   Y  + DL R          A+  G T D+        N+ 
Sbjct: 821 VLYKLQTVMSEDHKILIFSQYIKHLDLFRHYLDEKEINYAYLDGATRDRQEQVESFQNDE 880

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +      + G GLNL    + +     WW+       IE   V R  + G  R VF 
Sbjct: 881 NIKIFLISLKAGGLGLNLTA-ADYVFILDPWWNPA-----IEAQAVDRAHRIGQDRTVFT 934

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           Y  I +N+++E +L   R+K  + D L+++ + 
Sbjct: 935 YKFITKNSVEEKILALQRSKKQLADDLISSEEG 967


>gi|223940436|ref|ZP_03632288.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223890881|gb|EEF57390.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1099

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 30/214 (14%)

Query: 2    KQY-HKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            K Y  + +R      +   + +G +    +  +   +  Q+         +         
Sbjct: 879  KLYLAELRRSREQVFQTVAE-KGLSQSKIHVLAALTRLRQICCHPQLVGNDAQ-----SG 932

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
            K + L  +++    +   ++V   F   L  L+    Q         G+T  +       
Sbjct: 933  KTETLFELLDPLLTDGQKVLVFSQFVQVLKILEAECQQRQIRTHLLTGQTKQRQEVVAAF 992

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             ++    +      + G GLNL    + +V +  WW+       +E   + R  + G   
Sbjct: 993  QSDPNAAVFLLSLRAAGTGLNLTN-ASYVVLYDPWWNPA-----VEAQAIDRSHRIGQVN 1046

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  Y LIA  T++E + +  ++K+     +L  
Sbjct: 1047 TVNAYRLIAPGTVEEKIWELQQSKAQTIADVLGE 1080


>gi|310827837|ref|YP_003960194.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
 gi|308739571|gb|ADO37231.1| HepA/SNF2 family protein [Eubacterium limosum KIST612]
          Length = 1029

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 8    QRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + +L  +L G + E       +   +  Q+        E+         K++    I++ 
Sbjct: 817  REDLAYELDGGDFERRKLIILAMLTRLRQICCDPSLVYEDYTDV---SAKLELCLEILDT 873

Query: 66   A--NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +  +   +++   F S L  ++                    +    +  +NE   P+  
Sbjct: 874  SLASGHKVLLFSQFTSMLEIIEKELIKREIDFYKITGRTKAQERLRQVNAFNEDDTPVFL 933

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G ++++ +  WW+L             R  + G   +V VY LIA+
Sbjct: 934  ISLKAGGTGLNLT-GADVVIHYDPWWNLSAQ-----NQATDRAHRIGQTNSVQVYNLIAK 987

Query: 174  NTIDELVLQRLRTKSTIQDLLL 195
            ++I+E + +  + K+ + D ++
Sbjct: 988  DSIEEKIQKMQQAKAELADSII 1009


>gi|330973232|gb|EGH73298.1| SNF2-related:helicase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 880

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       ++    + K+    K+ +L  
Sbjct: 652 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDLPVNSKQGTSGKLNSLME 711

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 712 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 771

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 772 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 825

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 826 ARGTVEEKIQRLQREKSALASGVLDG 851


>gi|228990815|ref|ZP_04150780.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
 gi|228769341|gb|EEM17939.1| Helicase, SWF/SNF [Bacillus pseudomycoides DSM 12442]
          Length = 1071

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E    L  + +        +   +  Q+      + ++         K
Sbjct: 848  KLYAAYLAKLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR---GSSAK 904

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L  I+E+       I++   F   L+                       +       
Sbjct: 905  FEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPACERIELCNR 964

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    Q         R  + G K 
Sbjct: 965  FNEGEGDLFLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKN 1018

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+A  TI+E + +   +K  +   ++ 
Sbjct: 1019 TVQVIKLVAHGTIEEKMNELQESKKNLIAEVIE 1051


>gi|261337693|ref|ZP_05965577.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277134|gb|EFA22988.1| SNF2 family protein [Bifidobacterium gallicum DSM 20093]
          Length = 1221

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 2    KQYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y   +R+L   LQ       + F   S   +  QL        E          K+ A
Sbjct: 1001 KLYAASERKLRMMLQSSQDMNEDRFQVLSALTQLRQLCCDPRLVFENVSHAG---AKMDA 1057

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNE 106
            +  ++   + +   +++   F S L  +            A        +    +  +N 
Sbjct: 1058 IAELVTAARESGQKVLIFSQFVSFLDLIADMLDELGVAHMAITGSTPKQRRLELVDTFNM 1117

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P++     + G GLNL  G ++++    WW+     +  +     R  + G +  V 
Sbjct: 1118 DDTPVMLISLKAGGTGLNLT-GASVVIHADPWWN-----EAAQNQATDRAHRIGQRHTVN 1171

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++A +T++E +L     KS +   LL+
Sbjct: 1172 VYKIVASDTVEERILGLQERKSELARTLLD 1201


>gi|297622033|ref|YP_003710170.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377334|gb|ADI39164.1| putative SWI/SNF helicase family protein [Waddlia chondrophila WSU
           86-1044]
          Length = 868

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 23/210 (10%)

Query: 3   QYHKFQ---RELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y +F    ++       L G            ++  Q+       + ++      +  I
Sbjct: 647 MYDQFAASAQQSLIQKIKLDGAGKHRMEIFETLLRLRQICCHPYLVNGQEGTSGKLEALI 706

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEG 107
             +E I E+      ++   F S L+           +  +  G+T ++         + 
Sbjct: 707 ADMETIKEE--GKKALIFSQFTSMLSIIKKSCSKEGWKFCYLDGQTKERKEQVDHFQTDP 764

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +IP       + G GLNL    + ++ F  WW+       +ER  + R  + G K  V  
Sbjct: 765 EIPFFLISLKAGGVGLNLTA-ADYVLLFDPWWNPA-----VERQAIDRAHRIGRKDTVIA 818

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  ++I+E +L     K  + D LL+ 
Sbjct: 819 KRYLCLDSIEEKMLHLNTAKQHLADQLLDE 848


>gi|108760346|ref|YP_630479.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108464226|gb|ABF89411.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1006

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + E+   L+        +    ++  Q A            +     K++AL   
Sbjct: 794 IYAATREEVVSQLEAGG-SVLKALEALLRLRQAACHPALVP---GQQAKTSSKVQALVEA 849

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGK-IPL 111
           +     +    +V   + S L  ++               +          + + K  P+
Sbjct: 850 LGTAVEDGHKALVFSQWTSMLDLIEPALQEAGIGFIRLDGSTANRGAVAASFQDPKGPPV 909

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLNL    + +     WW+       +E     R  + G +R V VY L+
Sbjct: 910 MLISLKAGATGLNLTA-ADHVFLVDPWWNPS-----VEAQAADRAHRIGQQRPVMVYRLV 963

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q T++E +L     K  + +  L  
Sbjct: 964 SQGTVEEKILTLQAKKRELFEAALGG 989


>gi|168335382|ref|ZP_02693475.1| Non-specific serine/threonine protein kinase [Epulopiscium sp. 'N.t.
            morphotype B']
          Length = 1031

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 23/207 (11%)

Query: 8    QRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL  ++             +  ++  Q+      + E+         K+++   II+ 
Sbjct: 819  KKELMAEIAEDSREKNTIKMLAALMRLRQICAHPSMFLEDY---FGGSAKLESALEIIQD 875

Query: 66   A--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLF 113
                   +++   F S LA + +   +                    ++E+NEG + +  
Sbjct: 876  CVEAGHKVLLFSQFTSMLAMISQKLHEKMIRHNTLXGDVRPKDRMKMVEEFNEGDMQVFL 935

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ +  WW+L             R  + G K  V V+ LIA+
Sbjct: 936  ISLKAGGVGLNLTA-ADIVIHYDPWWNLSAQ-----NQATDRAYRMGQKNTVQVFKLIAK 989

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
            NTI+E + Q   +K+ + + +L+   K
Sbjct: 990  NTIEEKIKQLQDSKALLSESILSNENK 1016


>gi|229004592|ref|ZP_04162330.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
 gi|228756633|gb|EEM05940.1| Helicase, SWF/SNF [Bacillus mycoides Rock1-4]
          Length = 887

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 6   KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           K + E    L  + +        +   +  Q+      + ++         K + L  I+
Sbjct: 672 KLREETLKHLNKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYR---GSSAKFEQLLEIV 728

Query: 64  EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           E+       I++   F   L+                       +       +NEG+  L
Sbjct: 729 EECRSTGKRILIFSQFTKMLSIIGRELNRQAVPYFYLDGNTPAFERVELCNRFNEGEGDL 788

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 789 FLISLRAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 842

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           A  TI+E + +   +K  +   ++ 
Sbjct: 843 AHGTIEEKMNELQESKKNLIAEVIE 867


>gi|71733698|ref|YP_274080.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554251|gb|AAZ33462.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 914

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|320324786|gb|EFW80858.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330986243|gb|EGH84346.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013173|gb|EGH93229.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 914

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|154687749|ref|YP_001422910.1| YwqA [Bacillus amyloliquefaciens FZB42]
 gi|154353600|gb|ABS75679.1| YwqA [Bacillus amyloliquefaciens FZB42]
          Length = 924

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIK 57
            Y +  ++       L G   +A    S   +  Q+ +    Y +E+  + ++    K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
            L  ++   +      ++   +      ++           +      +  +    ++ +
Sbjct: 753 KLLDLMAVIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|159039139|ref|YP_001538392.1| non-specific serine/threonine protein kinase [Salinispora arenicola
            CNS-205]
 gi|157917974|gb|ABV99401.1| Non-specific serine/threonine protein kinase [Salinispora arenicola
            CNS-205]
          Length = 1074

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   +  Q+ N       +         K+  LE
Sbjct: 844  LYRAVVDDMLAQIESSDGIERRGLVLAAMTRLKQVCNHPAQLLRDGSALAGRSGKLARLE 903

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE- 106
              +++        ++   +                R       G         +  +   
Sbjct: 904  ETLDEVLAAGEKALLFTQYAEFGGMLRGHLSARFGRETLFLHGGVGKADRDAMVTRFQAT 963

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               PL      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 964  DGPPLFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQQRRVQ 1017

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E V   +  K  +   ++   ++
Sbjct: 1018 VRKFVCAGTVEEKVAALIADKRRLASTVVGTGEQ 1051


>gi|158320324|ref|YP_001512831.1| helicase domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158140523|gb|ABW18835.1| helicase domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 419

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +  ++ Y  L+   + A N  +K ++  QL  G +   ++   K++   K+ AL+ 
Sbjct: 211 KLYKRILKDSYVQLEKGEVTAQNLLTKLLRLSQLTGGFIG-ADDGTIKQISKAKLDALKE 269

Query: 62  II--EKANAAPIIVAYHF---------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           II   K     ++V   F           D   +  ++  G   D+     +   E  + 
Sbjct: 270 IIEDMKDAGKKLVVFARFLPEINAIKNMLDEMEISYSYITGEVKDRGEEVRKFQEEDGVR 329

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +  A   + G G+ L    + +VF+SL ++   +          R  + G K      +L
Sbjct: 330 VFIAQIQTAGLGITLHA-ADTVVFYSLDFNYANYS-----QARARIHRIGQKNTCTYIHL 383

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           IA  T+DE +L+ L  K  I   +++
Sbjct: 384 IAPGTVDEKILKALEKKENIAKQIVD 409


>gi|255659992|ref|ZP_05405401.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
 gi|260847745|gb|EEX67752.1| helicase, Snf2 family [Mitsuokella multacida DSM 20544]
          Length = 1078

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 23/208 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            MK    F RE+     GE        +   +  Q+A     + E  H       K+  LE
Sbjct: 862  MKSQRDFMREVSLASPGER--RIKILAILTRLRQIACDPALFLESYH---GGSGKLDMLE 916

Query: 61   VIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGK 108
             +IE+A      +++   F + LA +            +             ++E+N G 
Sbjct: 917  ELIEEAIEGGHRLLIFSQFTTMLAHIAERLRRKGLAYFSLDGATPALTRMKLVREFNRGA 976

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL  G +++V F  WW+       +E     R  + G +  V V+
Sbjct: 977  VPIFLISLKAGGTGLNLT-GADMVVHFDPWWNPA-----VEDQATDRAYRLGQRNNVQVF 1030

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI + T++E + +    K ++ D ++ 
Sbjct: 1031 KLIMKGTVEEKIYELQEKKKSLIDQMIQ 1058


>gi|239828513|ref|YP_002951137.1| non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
 gi|239808806|gb|ACS25871.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
          Length = 925

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ +    Y +E+  +++     K++ 
Sbjct: 694 LYEQLVNDTLERAKNASPFARRGLILQMLNGVKQICDHPALYLKERRPRQLVERSHKLEK 753

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +IE+   N    ++   +      +Q+               G         ++E+ 
Sbjct: 754 LVELIEQIRANDESCLIFTQYVRMGEMIQQLLSDLFDERVLFLHGGVPKQTRDRMVEEFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 814 ARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + + L  K  + D++   
Sbjct: 868 HVHKLITVGTIEEKIDEMLEQKQALADIITEG 899


>gi|171059597|ref|YP_001791946.1| non-specific serine/threonine protein kinase [Leptothrix cholodnii
            SP-6]
 gi|170777042|gb|ACB35181.1| Non-specific serine/threonine protein kinase [Leptothrix cholodnii
            SP-6]
          Length = 1449

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 27/214 (12%)

Query: 4    YHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +R+   D +      G      N  ++ ++  + A        +         K+ 
Sbjct: 1225 YEALRRQALRDAERAMSADGAGQAHLNILAQLMRLRRAACDPRLVTPDLVQ---PGAKVM 1281

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +  +  AN    +V   F   LA             +         +    +  + 
Sbjct: 1282 AFGELAAELVANGHKALVFSQFVDFLALLREPLDAAGLRYQYLDGSTPSAERTRRVAAFQ 1341

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+         + G GLNL    + +V    WW+        E     R  + G +R V
Sbjct: 1342 AGEGDFFLISLKAGGFGLNLT-VADYVVIADPWWNPAA-----EDQASGRAHRIGQQRPV 1395

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VY L+ + T++E ++     K  + D +L A +
Sbjct: 1396 TVYRLVNKGTLEEKIVALHADKRELADSVLEADR 1429


>gi|66045135|ref|YP_234976.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255842|gb|AAY36938.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae B728a]
          Length = 914

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALASGVLDG 885


>gi|91778444|ref|YP_553652.1| putative helicase [Burkholderia xenovorans LB400]
 gi|91691104|gb|ABE34302.1| Putative helicase [Burkholderia xenovorans LB400]
          Length = 1150

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 39/231 (16%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y       Q ++   +  + +   +       +K  Q+          K   + H    
Sbjct: 902  LYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRMLKAAGDAHETHD 961

Query: 53   -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K+  L  ++ +       +++   F   L+ + +A  +       
Sbjct: 962  RTDRVEKGARAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAEALEEAAIPYVI 1021

Query: 96   ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                       ++ + +G++PL      + G GLNL    + ++ +  WW+        E
Sbjct: 1022 LTGDTADRVTPVERFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----E 1075

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 R  + G  + VFVY LIA  +I+E +++    K+ + D +L+    
Sbjct: 1076 NQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAA 1126


>gi|328555338|gb|AEB25830.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens TA208]
 gi|328913706|gb|AEB65302.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens LL3]
          Length = 924

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIK 57
            Y +  ++       L G   +A    S   +  Q+ +    Y +E+  + ++    K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
            L  ++   +      ++   +      ++           +      +  +    ++ +
Sbjct: 753 KLLDLMAAIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|320329151|gb|EFW85148.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 914

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       ++    + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQGMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|308175364|ref|YP_003922069.1| ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307608228|emb|CBI44599.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 924

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIK 57
            Y +  ++       L G   +A    S   +  Q+ +    Y +E+  + ++    K++
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAL-ILSMLGRLKQICDHPALYLKEEQTELLNGRSVKLE 752

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
            L  ++   +      ++   +      ++           +      +  +    ++ +
Sbjct: 753 KLLDLMAAIRGQGESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDSLVERF 812

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R 
Sbjct: 813 QKKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERF 866

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI   TI+E +   L TK T+ D ++ +
Sbjct: 867 VHVHKLITTGTIEEKIDAMLETKQTLNDQIIQS 899


>gi|47565536|ref|ZP_00236577.1| Snf2 family protein [Bacillus cereus G9241]
 gi|47557526|gb|EAL15853.1| Snf2 family protein [Bacillus cereus G9241]
          Length = 1064

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + E    L  + +        +   +  Q+ N    + ++         K + L  I+
Sbjct: 849  KLREETLKHLDKDTLRKNKIRILAGLTRLRQICNHPALFVDDYK---GSSAKFEQLLDIL 905

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       I++   F   L+                       +       +NEG+  L
Sbjct: 906  EECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGDL 965

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+    Q         R  + G K  V V  L+
Sbjct: 966  FLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKNTVQVIKLV 1019

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            A  TI+  + +   +K  +   ++   +++
Sbjct: 1020 AHGTIEGKMHELQESKKNLIAEVIEPGEEK 1049


>gi|237797684|ref|ZP_04586145.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020534|gb|EGI00591.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 918

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       ++    + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPANSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|325283092|ref|YP_004255633.1| SNF2-related protein [Deinococcus proteolyticus MRP]
 gi|324314901|gb|ADY26016.1| SNF2-related protein [Deinococcus proteolyticus MRP]
          Length = 1322

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 22/211 (10%)

Query: 3    QYHKFQRELY------CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +  L        + +G    +       ++  Q A               ++ K 
Sbjct: 961  LYETVRANLEGRVRRELEARGLARSSVTILDALLRLRQAATDPRLVRLSAAASVQNNAKR 1020

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNE 106
            + L   + +       ++V   F S L  L+                  +    I+++  
Sbjct: 1021 EWLRSQLPELVQEGHRVLVFSQFASLLGLLEADLKELGISYSKLTGQTRRRAEAIEQFQS 1080

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL    + ++    WW+        E     R  + G  + VF
Sbjct: 1081 GHADVFLISLKAGGVGLNLTA-ADTVIHLDPWWNPAA-----EAQATDRAYRIGQDQPVF 1134

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA  +++E +L     K+ +   +L+ 
Sbjct: 1135 VYKLIAAGSVEERILDLQARKAALASGVLDG 1165


>gi|115372534|ref|ZP_01459842.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310819012|ref|YP_003951370.1| swi/snf family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115370496|gb|EAU69423.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309392084|gb|ADO69543.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1000

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 21/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   + E+   L+        +    ++  Q A            +     K+ AL   
Sbjct: 788 VYAATREEVVSQLEEGG-SVLKALEALLRLRQAACHPALVP---GQQAKTSSKVLALIEA 843

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGK-IPL 111
           +     +    +V   + S L  ++ A  +                     +   +  P+
Sbjct: 844 LGTAVEDGHKALVFSQWTSMLDLIEPALREAGIGFVRLDGGTADRGGVAASFQAPEGPPV 903

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLNL    + +     WW+       +E     R  + G +R V VY L+
Sbjct: 904 MLISLKAGATGLNLTA-ADHVFLVDPWWNPS-----VEAQAADRAHRIGQQRPVMVYRLV 957

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q T++E +L     K  + +  L  
Sbjct: 958 SQGTVEEKILTLQEKKRALFEAALGG 983


>gi|291234127|ref|XP_002737002.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5-like [Saccoglossus kowalevskii]
          Length = 1241

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 23/211 (10%)

Query: 3    QYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y    RE+   +   + +               Q+ N    Y + K     H  K+K L
Sbjct: 1016 LYESLVREMMQKIIECKEKGQRNKYIFKILTHLKQICNHPANYLDSKPSIVEHSGKMKML 1075

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWN- 105
              ++E        +++   +   ++ + K                 +  K    I  +  
Sbjct: 1076 VELLEPILQQGEKVLIFSQYVRMISLMAKMLEHHFHIKPLTLEGSMSQIKRDKVIHAFKT 1135

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +      + G GLNL    N ++ + LW++       +E     R  + G  ++V
Sbjct: 1136 EPHQQVFIISLKAGGTGLNLTE-ANHVIHYDLWYNPA-----VENQATDRAYRIGQSKSV 1189

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FVY +I + T +E + + +  K  + DL +N
Sbjct: 1190 FVYRMITEKTFEERIDEMIVKKKDLSDLSVN 1220


>gi|330961339|gb|EGH61599.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 885

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 657 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 716

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 717 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 776

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 777 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 830

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 831 ARGTVEEKIQRLQREKSALAAGVLDG 856


>gi|325261436|ref|ZP_08128174.1| helicase, SNF2/RAD54 family [Clostridium sp. D5]
 gi|324032890|gb|EGB94167.1| helicase, SNF2/RAD54 family [Clostridium sp. D5]
          Length = 871

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 26/217 (11%)

Query: 7   FQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             R++  DL+ +  EA          +  +K  Q+ N    Y  ++ +      K   L+
Sbjct: 646 LYRKVILDLENKLAEAEGIERCGLVLTSIMKLKQICNHPDQYMGQQTFALEDSGKFAMLK 705

Query: 61  VII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I          +++   F                        G  + K    ++ +  E
Sbjct: 706 EICETIYEKRERVLIFTQFKEITEYLGDFLKSIFKTEGYVLHGGTPVKKRSEIVEAFQGE 765

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP +     + G GLNL    N ++ F  WW+       +E     R  + G ++ V 
Sbjct: 766 KYIPYIVLSVKAGGTGLNLTK-ANHVIHFDRWWNPA-----VENQATDRAFRIGQEKNVM 819

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+ L+   TI+E +   + +K  + + ++ +  ++ I
Sbjct: 820 VHKLVCTGTIEEKIDAMINSKKELAENVIGSGGEKWI 856


>gi|297621810|ref|YP_003709947.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila WSU 86-1044]
 gi|297377111|gb|ADI38941.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila WSU 86-1044]
          Length = 1156

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 4    YHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K  RE    L   +G +    +  +   +  Q+      + +EK  ++    K   L 
Sbjct: 937  YAKSAREELSQLVKKEGFDKVQIHVLATLTRLKQICCHPAIFAKEKA-EDGDSSKYDMLV 995

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKI 109
             +++         ++   +   L  ++           +  G T ++     +   +  I
Sbjct: 996  ELLQTLIEGGHKTVIFSQYTKMLQIMRKDLQTLGIRFEYLDGATKNRMNIVKKFNEDHNI 1055

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y 
Sbjct: 1056 PVFLVSLKAGGSGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQTRSVSSYK 1109

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            L+   TI+E +L+    K  +   ++N  ++
Sbjct: 1110 LVTMGTIEEKILELQERKKGLVKKVINTDEE 1140


>gi|293379105|ref|ZP_06625256.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
 gi|292642246|gb|EFF60405.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
          Length = 705

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 479 VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 535

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 536 QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 595

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 596 AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 649

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 650 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 689


>gi|68536447|ref|YP_251152.1| putative DNA/RNA helicase [Corynebacterium jeikeium K411]
 gi|68264046|emb|CAI37534.1| putative DNA/RNA helicase [Corynebacterium jeikeium K411]
          Length = 1023

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 27/218 (12%)

Query: 3   QYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y  F +  E+   L G    A N     VK  Q+ N   ++  +             KI
Sbjct: 786 LYETFIKDMEMRLQLPGGKRRA-NILGALVKIKQICNHPAHFAGDGSGILADGKHRSAKI 844

Query: 57  KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
           + +  I ++       +++   F            S           G +  K    +++
Sbjct: 845 ERIFEITDQALEQGKKVLMFTQFPTFGKMLAPELQSTFGVEVPVLHGGLSRAKRTQMVRD 904

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +      P++     + G G+ L    ++++    WW+       +E     R  + G  
Sbjct: 905 FQSADGPPIMILSVRAGGTGITLTE-ASVVIHIDRWWNPA-----VEDQATDRAYRIGQN 958

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           ++V VY L+ Q TIDE +   + +K  +   ++ A + 
Sbjct: 959 KSVEVYKLVVQGTIDERIHDIIMSKRELAGDIVGAGEG 996


>gi|325662084|ref|ZP_08150703.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471747|gb|EGC74966.1| hypothetical protein HMPREF0490_01441 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 451

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 9/202 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY + + +     + E I A N+A+ + K  Q+ANGA+ Y +      +HD K++ALE I
Sbjct: 255 QYDEMREDYLLPYKEEAITAANAAALSGKLCQMANGAI-YSDSGEAVHIHDRKLEALEDI 313

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLFAHPASC 119
           IE A   PI++ Y F  DL R+ +   Q +           I++WNEGK  +   HPAS 
Sbjct: 314 IEAAQG-PILLCYWFKHDLERITEKLEQLKVFYSRIVTEENIRKWNEGKYDVGLIHPASA 372

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           GHGLNLQ+  N +V+F L W LE +QQ   R+    Q+Q      V V +++   TIDE 
Sbjct: 373 GHGLNLQHSSNHIVWFGLTWSLELYQQTNARLWRQGQKQD----TVVVQHIVTAGTIDED 428

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           +L  L  K   Q  L++A+K  
Sbjct: 429 ILDALTHKDASQTRLIDAVKAR 450


>gi|257067534|ref|YP_003153789.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
 gi|256558352|gb|ACU84199.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
          Length = 1026

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 30/218 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
             Y     EL   + G + +   +       +  Q+ N   +Y  +        E    K+
Sbjct: 789  LYEAIVEELMTQIDGADEKNRRTLVVSAITRLKQVCNHPAHYLGDGSALVREGEHRSGKL 848

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF--------------PQGRTLDKDPCT 100
            + ++ +++         ++   F +    L   +                G +       
Sbjct: 849  ELVDDLLQTAFEKGHKALLFTQFTTFGHLLVPYWRERFAEFGIDVPFLHGGVSKRDRDQM 908

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+ + +    L+     + G GL L    N +V    WW+       +E     R  +
Sbjct: 909  VAEFQQHRDRPGLMLLSLRAGGTGLTLTA-ANHVVHLDRWWNPA-----VENQATDRAFR 962

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G +R V V  L++  T++E +   L+ K  + +L + 
Sbjct: 963  IGQRRDVTVNTLVSAGTVEEKIDTVLQDKQALAELTVG 1000


>gi|289648568|ref|ZP_06479911.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 914

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|289624075|ref|ZP_06457029.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869863|gb|EGH04572.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 914

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|289706474|ref|ZP_06502828.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
 gi|289556793|gb|EFD50130.1| SNF2 family N-terminal domain protein [Micrococcus luteus SK58]
          Length = 1143

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 22/210 (10%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +     +R++   L   +   F           LA      D+   +  V   K++
Sbjct: 916  KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTLLRMLALAPQIVDD--QYASVPSSKLE 973

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
                 + +       +IV   F S L            +      +       I+ + EG
Sbjct: 974  RFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGRAEVIRGFREG 1033

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GL L    + +     WW+        E   V R  + G +R V V
Sbjct: 1034 EAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAA-----EAQAVDRAHRIGQERTVMV 1087

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+++ TI+E VL+  R K+ +   L++ 
Sbjct: 1088 YRLVSEGTIEEKVLELQRRKAELFGALMDE 1117


>gi|301381674|ref|ZP_07230092.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato Max13]
          Length = 918

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|229084801|ref|ZP_04217060.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
 gi|228698515|gb|EEL51241.1| Helicase, SWF/SNF [Bacillus cereus Rock3-44]
          Length = 1071

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 27/213 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + E    L  + +        +   +  Q+      + ++         K
Sbjct: 848  KLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPGLFVDDYK---GSSAK 904

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L  I+E+       I++   F   L+                       +       
Sbjct: 905  FEQLLEIVEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSAERVELCNR 964

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +NEG+  L      + G GLNL  G + ++ + LWW+    Q         R  + G K 
Sbjct: 965  FNEGEGDLFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKN 1018

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  L+A  TI+E + +    K  +   ++ 
Sbjct: 1019 TVQVIKLVAHGTIEEKMNELQENKKHLIAEVIE 1051


>gi|229542511|ref|ZP_04431571.1| SNF2-related protein [Bacillus coagulans 36D1]
 gi|229326931|gb|EEN92606.1| SNF2-related protein [Bacillus coagulans 36D1]
          Length = 933

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 23/214 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y +  +  +  +                 +  QL N    +  +E+         K++ 
Sbjct: 708 LYEETVQNAFKGIDQLSGLGRRALILQMLNRLKQLCNHPALFLKEEKPAHLLERSFKLEK 767

Query: 59  ----LEVIIEKANAAPIIVAY---------HFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                E I+    +  I   Y                             K    I+++ 
Sbjct: 768 LATLTEAILNTGESCLIFTQYIGMGQMIRQMMKELFGLDVPFLNGSMPKAKRDQLIRDFQ 827

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               P+      + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 828 NKAFPVFLLSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAHRIGQQRFV 881

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V+ LIA  T++E +   L  K  + D ++ +  
Sbjct: 882 HVHKLIATGTLEEKIDAMLEKKQALNDEIIQSDN 915


>gi|52082146|ref|YP_080937.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52787537|ref|YP_093366.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|319648023|ref|ZP_08002240.1| YwqA protein [Bacillus sp. BT1B_CT2]
 gi|52005357|gb|AAU25299.1| putative helicase YwqA [Bacillus licheniformis ATCC 14580]
 gi|52350039|gb|AAU42673.1| YwqA [Bacillus licheniformis ATCC 14580]
 gi|317389658|gb|EFV70468.1| YwqA protein [Bacillus sp. BT1B_CT2]
          Length = 921

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKA 58
            Y +  ++ +  +             S   K  Q+      Y +E   + ++    K++ 
Sbjct: 691 LYEQLVKDTFEHMSSLAGMQRKALILSMLGKLKQICGHPALYLKETGSELLNGRSVKLEK 750

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +    + +    ++   +      +++                 +  +    ++++ 
Sbjct: 751 LLELTKTIRESDESCLIFTQYLGMGDMMKRLLEKSFGEPVKFLNGSLSKLERDKMVEQFQ 810

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P+L     + G GLNL    N ++ +  WW+       +E     R  + G KR V
Sbjct: 811 NKEFPILILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKRFV 864

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + Q L +K ++ D ++ +
Sbjct: 865 HVHKLITTGTIEEKIDQMLESKQSLNDQIIQS 896


>gi|298486414|ref|ZP_07004475.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159042|gb|EFI00102.1| helicase/SNF2 family domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 914

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 686 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 745

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 746 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 805

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 806 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 859

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 860 ARGTVEEKIQRLQREKSALAAGVLDG 885


>gi|322691254|ref|YP_004220824.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456110|dbj|BAJ66732.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 460

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 11/206 (5%)

Query: 4   YHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVY---YDEEKHWKEVHDEKIKAL 59
           Y + +R++  DL     +   N+   T K  QL  G +Y    D E   + V D K+ AL
Sbjct: 260 YDRLRRQMVADLDDGTTVTVANAGVLTAKLAQLTCGCLYPDADDPEGTIRHVDDVKLDAL 319

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             II  A+  P++V Y F  +L R++  FP  R + +    ++EW  G++PLL AHP + 
Sbjct: 320 ADIISAADG-PVLVFYQFTDELERMRARFPGMREVHE-QGVLEEWRNGRVPLLAAHPQAA 377

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GLN+Q GG+ +V+ SL W  +++     R    R  + G KR V V+ L+  NT+D  
Sbjct: 378 KYGLNIQDGGHEIVWTSLPWSFDDY-----RQACDRLHRQGQKRTVRVHRLLESNTVDRR 432

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
            L  L  +  + + +++AL+ ET  V
Sbjct: 433 KLDVLTGRMMLHEAVMDALEGETAGV 458


>gi|94265883|ref|ZP_01289612.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93453578|gb|EAT03977.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 389

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 26/208 (12%)

Query: 5   HKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
              +R     LQ    EA         ++ ++  + A        +     +   K+   
Sbjct: 167 ETIRRRALEVLQENEGEAAGRRHLKVLAELMRLRRAACHPRLVLGKGA---LMAGKLPLF 223

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
             ++    +N    +V   F   LA +           +         +    +  +  G
Sbjct: 224 AEVLHDIISNRHKALVFSQFVDHLAIVREYLDGQGIGYQYLDGSTPARERQRAVAAFQAG 283

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GLNL    + ++    WW+       +E     R  + G +R V +
Sbjct: 284 EGEVFCISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----VEDQASDRAHRIGQERPVTI 337

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y L+ + +I+E +L     K  + + LL
Sbjct: 338 YRLVTKGSIEEKILALHGHKRDLAENLL 365


>gi|326332924|ref|ZP_08199181.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325949282|gb|EGD41365.1| SNF2/helicase domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 1055

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 22/210 (10%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y       ++ +   L   N       S   +  QL+      D E         K+ 
Sbjct: 836  KIYDAHLAKERQRILHLLDDFNDNRVAILSALTRLRQLSLDPGLVDPEDDHVG--SAKLD 893

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWNEG 107
             L   IE+  A     +V   F S L R +                       I+ + +G
Sbjct: 894  TLVDHIEELAAEGHKALVFSQFTSFLGRARTRLAEAGIDAAYLDGATRDRGAVIESFRDG 953

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GL L    + +     WW+        E   V R  + G  + V V
Sbjct: 954  DAPVFLISLKAGGVGLTLTE-ADYVFVLDPWWNPAA-----EAQAVDRAHRIGQTQHVMV 1007

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L++ +TI+E V++    K+ +   +++ 
Sbjct: 1008 YRLVSTDTIEEKVMELKERKAELFAKVVDG 1037


>gi|302386693|ref|YP_003822515.1| SNF2-related protein [Clostridium saccharolyticum WM1]
 gi|302197321|gb|ADL04892.1| SNF2-related protein [Clostridium saccharolyticum WM1]
          Length = 1047

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 22/202 (10%)

Query: 7    FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
              ++    L+     +     +   +  Q+             +     K++    +I  
Sbjct: 834  LLKQELERLEDRRGRDNIQILAALTRLRQICCDPHLCYNNYKGE---SAKLETCMDLIRN 890

Query: 66   --ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                   I++   F S L  +                    ++    +  + + +IPL  
Sbjct: 891  GVEGGHKILLFSQFTSMLEIMEQRLKKEAVPYYMLTGATPKEERLHMVNSFKDDEIPLFL 950

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    ++++ F  WW++             R  + G ++ V V+ LI +
Sbjct: 951  ISLKAGGTGLNLTA-ADVVIHFDPWWNVAAQ-----NQATDRAHRIGQEKQVSVFKLITK 1004

Query: 174  NTIDELVLQRLRTKSTIQDLLL 195
            NTI+E +L+   +K  + + ++
Sbjct: 1005 NTIEENILKLQESKKDLAEQII 1026


>gi|260577578|ref|ZP_05845517.1| DNA/RNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258604302|gb|EEW17540.1| DNA/RNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 1029

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 27/218 (12%)

Query: 3    QYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y  F +  E+   L G    A N     VK  Q+ N   ++  +             KI
Sbjct: 792  LYETFIKDMEMRLQLPGGKRRA-NILGALVKIKQICNHPAHFAGDGSGILADGKHRSAKI 850

Query: 57   KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
            + +  I ++       +++   F            S           G +  K    +++
Sbjct: 851  ERIFEITDQALEQGKKVLMFTQFPTFGKMLAPELQSTFGVEVPVLHGGLSRAKRTQMVRD 910

Query: 104  WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +      P++     + G G+ L    ++++    WW+       +E     R  + G  
Sbjct: 911  FQSVDGPPIMILSVRAGGTGITLTE-ASVVIHIDRWWNPA-----VEDQATDRAYRIGQN 964

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++V VY L+ Q TIDE +   + +K  +   ++ A + 
Sbjct: 965  KSVEVYKLVVQGTIDERIHDIIMSKRELAGDIVGAGEG 1002


>gi|251795483|ref|YP_003010214.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247543109|gb|ACT00128.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 965

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 27/224 (12%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKH----WKEVHDEKI 56
            Y     +L   L   G         +   +  QL +     +EE+     W E    K+
Sbjct: 730 IYENIVADLLEKLDKLGPMQRRGLILASLTRLKQLCDHPAMLNEERELQQQWDESRSNKV 789

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
             L  ++E+  +     ++   F              L         G    K    I +
Sbjct: 790 ARLLEMVEEIASEGERCLIFTQFVDMGEQLKKLLEERLGLPVPYLHGGVPKAKRDDMIDK 849

Query: 104 WNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +   + P         + G GLNL    N +  F  WW+       +E     R  + G 
Sbjct: 850 FQNPEEPCCAFVLSLKAGGTGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAFRIGQ 903

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V V+  I   T++E + + +  K  + + ++   ++    +
Sbjct: 904 TKQVQVHKFITLGTLEEKIDEMIDRKQQLNEQVVGQSEQWITEL 947


>gi|330878594|gb|EGH12743.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 918

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|317491226|ref|ZP_07949662.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
 gi|316920773|gb|EFV42096.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
            9_2_54FAA]
          Length = 1085

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 22/211 (10%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKH--WKEVHDE 54
             Y       Q ++   +  + +   +       +K  Q+       + EK    KE    
Sbjct: 860  LYETVRTAMQEKVRTAIDSQGMARSHIIVLDALLKLRQVCCDPRLVNLEKAALVKESAKL 919

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNE 106
            ++    +         I++   F   L  + +              +       +Q +  
Sbjct: 920  ELLLELLPEMIEEGRRILLFSQFTGMLDLISQALDKAGIAYVTLTGSTADRHAPVQRFQR 979

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++PL      + G GLNL    + ++ +  WW+        E     R  + G  + VF
Sbjct: 980  GEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRMGQDKPVF 1033

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA  +I+E ++     K+ + + +L+ 
Sbjct: 1034 VYKLIAAGSIEEKIVALQDKKAALANSILSE 1064


>gi|113866590|ref|YP_725079.1| SNF2 family DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113525366|emb|CAJ91711.1| Superfamily II DNA/RNA helicase, SNF2 family [Ralstonia eutropha
           H16]
          Length = 1023

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 18/188 (9%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
             +  ++ ++  + A        E   +     K++A   +  +  A+    +V   F  
Sbjct: 818 RIHVLAQLMRLRRAACDPRLVTPELSGQLSEGAKVRAFVELASELAASGHKTLVFSQFVD 877

Query: 80  DLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            L  L++                   +    +  +  G+  +      + G GLNL    
Sbjct: 878 FLQLLRQGLERAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNLTA-A 936

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++    WW+        E   + R  + G +R V VY LI   TI+E ++   R K  
Sbjct: 937 DYVIIADPWWNPAA-----EDQAMGRAHRIGQQRPVTVYRLINAGTIEERIVDLHRDKRA 991

Query: 190 IQDLLLNA 197
           + D LL A
Sbjct: 992 LADGLLEA 999


>gi|28869303|ref|NP_791922.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852544|gb|AAO55617.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 918

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|330967945|gb|EGH68205.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 918

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|295092105|emb|CBK78212.1| Superfamily II DNA/RNA helicases, SNF2 family [Clostridium cf.
            saccharolyticum K10]
          Length = 1085

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 32/216 (14%)

Query: 2    KQYHK--------FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
            K Y           +++   +LQ          ++  +  Q+        E         
Sbjct: 863  KLYEAHAVRLMESLEKQSDEELQKGK---LQILAELTRLRQICCAPEMLYENYSET---S 916

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             K++    +I +  +    I++   F S                       + +      
Sbjct: 917  CKVETCMELIHQAMSGNHKILLFSQFTSVFPILEKRLLQEKIPYYELTGQTSKENRMRMT 976

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +++N G +P+      + G GLNL    +I++ F  WW+L             R  + G 
Sbjct: 977  EQFNSGDVPVFLISLKAGGTGLNLTA-ASIVIHFDPWWNLAAQ-----NQATDRAHRIGQ 1030

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ V V+ LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 1031 EKQVTVFKLIAQNTIEEKIIKLQQEKQKLSSQILDG 1066


>gi|213967360|ref|ZP_03395508.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|302058432|ref|ZP_07249973.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131163|ref|ZP_07257153.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213927661|gb|EEB61208.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 918

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|227893708|ref|ZP_04011513.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
 gi|227864568|gb|EEJ71989.1| Snf2 family helicase [Lactobacillus ultunensis DSM 16047]
          Length = 1180

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    ++L   L G+         F   ++ +K  ++        E  H       K+ 
Sbjct: 959  LYQLQTQKLIAQLNGQEETDFKKSRFEIFAQIIKLREICCDPRLLYENYH---GKSNKLI 1015

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
                +I+    N   I++   F S L                       +K    I+E+N
Sbjct: 1016 TTVDLIKTNLENGHKILLFSQFTSMLEILQSKLKKAKIPLFMLTGSTPKEKRQEYIREFN 1075

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              + P +      + G G+NL    ++++ +  WW+L       E     R  + G K +
Sbjct: 1076 TMEQPGVFLISLKAGGTGINLTS-ADVVIHYDPWWNLAA-----ENQATDRAHRIGQKHS 1129

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY ++ +NTI+E +++  + K+ +   +L 
Sbjct: 1130 VKVYKMVTKNTIEERIIKLQQKKAELAQAILG 1161


>gi|255530347|ref|YP_003090719.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
 gi|255343331|gb|ACU02657.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
          Length = 1130

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 20/208 (9%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y    +++   ++G+        +        +  Q+ N A    ++K +     +  
Sbjct: 909  EVYEAAVQDIKEYIEGKAEDELAKSSMYVLQGITRLRQICNSATLLKDDKFYGNASSKME 968

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEG 107
              LE I  K+    I+V   F   L  ++           +  G+T ++        +  
Sbjct: 969  VLLEQIESKSPNHKILVFSQFVGMLDLIRAQLGERGIAHEYLTGQTRNRQQVVNSFQDNP 1028

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +I +      + G GLNL    + +     WW+       +E   + R  + G ++ V  
Sbjct: 1029 EIRVFLISLKAGGVGLNLTR-ADYVYLVDPWWNPA-----VENQAIDRTYRIGQEKNVVA 1082

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              LI  +TI+E +++   TK  + D L+
Sbjct: 1083 VRLICPDTIEEKIMKLQNTKRDLVDDLI 1110


>gi|296159842|ref|ZP_06842663.1| SNF2-related protein [Burkholderia sp. Ch1-1]
 gi|295889825|gb|EFG69622.1| SNF2-related protein [Burkholderia sp. Ch1-1]
          Length = 1150

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 39/231 (16%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y       Q ++   +  + +   +       +K  Q+          K   + H    
Sbjct: 902  LYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTLKAAGDAHETHD 961

Query: 53   -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K+  L  ++ +       +++   F   L+ + +A  +       
Sbjct: 962  RTDRIEKGARAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAEALEEAAIPYVI 1021

Query: 96   ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                       ++ + +G++PL      + G GLNL    + ++ +  WW+        E
Sbjct: 1022 LTGDTADRVTPVERFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----E 1075

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 R  + G  + VFVY LIA  +I+E +++    K+ + D +L+    
Sbjct: 1076 NQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAA 1126


>gi|229489423|ref|ZP_04383286.1| Non-specific serine/threonine protein kinase [Rhodococcus
           erythropolis SK121]
 gi|229323520|gb|EEN89278.1| Non-specific serine/threonine protein kinase [Rhodococcus
           erythropolis SK121]
          Length = 609

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     + +    G  I    N  +      Q+ N       +         K+    
Sbjct: 378 RIYRSAVADAFDSGLGTGIARRGNILALLTTLKQVCNHPAQVTGDTDDLYGRSGKLDRAT 437

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKDPCTIQEWNE 106
            +I +   +    ++   + +    L +                G   DK    +  +  
Sbjct: 438 EMISEIVDDGDRALIFTQYRTMGEMLSRHLGAELGIGAVPFLHGGLNTDKRDAMVDAFQN 497

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P+L     + G GLNL    + +V +  WW+       +E     R  + G KR 
Sbjct: 498 DTDSPPVLILSLRAAGFGLNLTR-ASHVVHYDRWWNPA-----VEDQATDRAHRIGQKRT 551

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V V+ L+   T+++ +     +K  + D +
Sbjct: 552 VNVHTLVTGGTVEDHIAAMHESKRAVADAV 581


>gi|225871163|ref|YP_002747110.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225700567|emb|CAW95068.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 1034

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  L      +         S   +  Q+ +    + +     +    K+  L  ++
Sbjct: 819  RQMQERLSAATDDDINRSKLEILSGITRLRQICDTPSLFMDY----QGGSGKLDNLRTLL 874

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
               K N    ++   F   LA +++   Q              +      + +N G    
Sbjct: 875  LQIKENGHRALLFSQFKGMLALVKQEMDQLGLSSYTITGSTPANDRQEMTRAFNNGSKDA 934

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G +  V VY LI
Sbjct: 935  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYRLI 988

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 989  TRGTIEEKILELQENKRHLITTVLDG 1014


>gi|330881511|gb|EGH15660.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 337

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       ++    + K+    K+ +L  
Sbjct: 109 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQGMPVNSKQGTSGKLNSLME 168

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 169 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 228

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 229 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 282

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 283 ARGTVEEKIQRLQREKSALAAGVLDG 308


>gi|313637601|gb|EFS03000.1| DNA/RNA helicase protein [Listeria seeligeri FSL S4-171]
          Length = 512

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 21/204 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 292 EKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 348

Query: 65  --KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK-DPCTIQEWNEGKIPLL 112
             + N   +++   F   LA ++           +  G+T  K     +  +NEG+  + 
Sbjct: 349 TARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIF 408

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 409 LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 462

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           + TI+E + +  + K  + D L+ 
Sbjct: 463 KGTIEERIFELQKKKQALVDELIQ 486


>gi|283798366|ref|ZP_06347519.1| superfamily II DNA/RNA helicase, SNF2 family [Clostridium sp. M62/1]
 gi|291073950|gb|EFE11314.1| superfamily II DNA/RNA helicase, SNF2 family [Clostridium sp. M62/1]
          Length = 1044

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 74/208 (35%), Gaps = 23/208 (11%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y     +     +  GE        +   +  Q+        E    +     K++  
Sbjct: 825  KLYGANVLRLRQELEAGGELPGKIQILAGLTRLRQICCDPSLCYENYKGE---SAKLETC 881

Query: 60   EVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEG 107
              ++    A    +++   F S    ++K   +            + ++      ++  G
Sbjct: 882  LALLSGAVAAGHRVLLFSQFASMFPIIKKRLDRAGIGCFVLTGATSKEERSRLTAKFYAG 941

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             +P+      + G GLNL    ++++ +  WW+              R  + G K+ V V
Sbjct: 942  DVPVFLISLKAGGTGLNLTA-ADVVIHYDPWWNAAAQD-----QATDRAHRIGQKKQVTV 995

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + LI + T++E +L    +KS + + ++
Sbjct: 996  FRLIMKGTVEESILHLQESKSELAERIV 1023


>gi|312197752|ref|YP_004017813.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311229088|gb|ADP81943.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 1045

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 23/214 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y     ++   L+  +          +   +  Q+ N   +   +         K+  L
Sbjct: 814  LYRAVVDDMMERLRDASSPVRRNGVVLAAMTRLKQVCNHPAHLLGDGSALAGRSGKLARL 873

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNE 106
            E ++ +        +    F    A L                 G    +    I+ +  
Sbjct: 874  EELLTQVVAGGERALCFTQFARFGAMLAPYLSTRLGVEVSFLHGGLRAAERDALIERFQT 933

Query: 107  GKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G  P +      + G G+NL    N +V    WW+       +E     R  + G +R V
Sbjct: 934  GTGPGVFLLSLKAGGTGVNLTA-ANHVVHVDRWWNPA-----VEAQATDRAHRIGQRRDV 987

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +V  L+   T++E + + L  K+ +   ++   +
Sbjct: 988  WVRTLLCMGTLEERIDRILVDKAALARTVVGGGE 1021


>gi|331019536|gb|EGH99592.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 918

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       + +   + K+    K+ +L  
Sbjct: 690 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNHDMPVNSKQGTSGKLNSLME 749

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 750 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 809

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 810 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 863

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 864 ARGTVEEKIQRLQREKSALAAGVLDG 889


>gi|328957397|ref|YP_004374783.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
 gi|328673721|gb|AEB29767.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
            sp. 17-4]
          Length = 1075

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 23/207 (11%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  +E    + G           +   +  Q+      + ++    E    K++ L+
Sbjct: 852  AYLQRIQESVNSMNGAEFKKNRIEILAGLTRLRQICCDPKLFIDDY---EGSSGKLEQLK 908

Query: 61   VIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
              I+  + N   I++   F S LA ++                    +    + ++N G+
Sbjct: 909  ETIQTARENGRRILIFSQFTSMLAIIEKELDEQEVETFYLSGQTKPKERIEMVNKFNAGE 968

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+       +E     R  + G K+ V V 
Sbjct: 969  KDVFLISLKAGGTGLNLT-GADMVILYDLWWNPA-----VEEQAAGRAHRIGQKKVVQVL 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LIA+ TI+E + Q  + K  + D ++
Sbjct: 1023 RLIAEGTIEEKIDQLQQEKKALFDQII 1049


>gi|312866392|ref|ZP_07726610.1| SNF2 family N-terminal domain protein [Streptococcus downei F0415]
 gi|311098086|gb|EFQ56312.1| SNF2 family N-terminal domain protein [Streptococcus downei F0415]
          Length = 1036

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 25/209 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               ++    +L  + I      S   +  Q+ +    + +          KI +L  ++ 
Sbjct: 819  DSVRQSSDAELNRQKI---QILSGITRLRQICDTPALFMDYGG----SSGKIDSLHQLLS 871

Query: 65   KAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +        ++   F   L                       +      + +N G   + 
Sbjct: 872  QIQESGHRTLIFSQFRQMLDIAEDLVAQLGMTSYKITGSTPAETRQEMTKAFNNGSKDVF 931

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+            ++R  + G K +V VY LI 
Sbjct: 932  LVSLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRLGQKESVEVYRLIT 985

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E +L+   +K  +   +L+  +  
Sbjct: 986  RGTIEEKILELQDSKRNLVTTVLDGNESR 1014


>gi|159902591|ref|YP_001549935.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159887767|gb|ABX07981.1| Superfamily II DNA/RNA helicase, SNF2 family [Prochlorococcus marinus
            str. MIT 9211]
          Length = 1067

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIK 57
             Y+K       ++    I   ++       +  Q+ N      +EK+  +   +   K++
Sbjct: 836  LYNKTVDNTLQEIARSPIGQRHAKTLGLLTRLKQICNHPALALKEKNISDDFGIRSTKLQ 895

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             LE +++   A     ++   F      LQ                G         + ++
Sbjct: 896  RLEELLDVIFATEDRALLFTQFAEWGHLLQAYLEKKWGHSILFLHGGTRKIDRQSMVDQF 955

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    N ++    WW+       +E     R  + G K
Sbjct: 956  QEDPRGPKLFLLSLKAGGIGLNLTR-ANHVLHIDRWWNPA-----VENQATDRAYRIGQK 1009

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +V V+  IA  +++E + Q +  KS + + ++ A +
Sbjct: 1010 NSVMVHKFIATGSVEEKIDQMITEKSKLAENIIGAGE 1046


>gi|303238092|ref|ZP_07324632.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302481727|gb|EFL44782.1| SNF2 family N-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 1337

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M +Y   + +    ++ E   + ++ ++  +  QLA      D      E    K  A  
Sbjct: 1119 MARYELQRAQAEAMVEVEKNVSVSTLAEITRLRQLACSTALVD---KKWEGVSSKTLAFI 1175

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK 108
             + E  N      +V   F S  A ++K   +             + K    ++E+ EG 
Sbjct: 1176 DLAESLNDSGNRALVFSQFTSYFAEIKKMMDKTHLPYLYLDGSTPMKKREQLVREFQEGD 1235

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    Q         R  + G ++ V VY
Sbjct: 1236 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQ-----QATDRAYRIGQEQDVTVY 1289

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LIAQ+TI+E +L+  +TK  + D LL  
Sbjct: 1290 RLIAQHTIEEKILRLHKTKRDLADSLLEG 1318


>gi|157694030|ref|YP_001488492.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
 gi|157682788|gb|ABV63932.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
          Length = 925

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 26/214 (12%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKI 56
            Y +  ++       L G   +A    S   +  Q+ +    Y +E            K+
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAI-ILSMLGRLKQICDHPALYLKESGTDVKLLKRSLKM 752

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQE 103
             L  ++          ++   +      +++                 +  +    +  
Sbjct: 753 DKLAELLKAIHEQGESCLIFTQYIGMGNMIKQLAEKMFGEPVQFLNGSLSKQERDKMVDR 812

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +  +L     + G GLNL    N ++ +  WW+       +E     R  + G KR
Sbjct: 813 FQKKEFNILILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKR 866

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ +I   TI+E + Q L TK T+ D ++ +
Sbjct: 867 FVHVHKMITTGTIEEKIDQMLETKQTLNDQIIQS 900


>gi|196250406|ref|ZP_03149098.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
 gi|196210065|gb|EDY04832.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
          Length = 926

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ N    Y +E+  +++     K++ 
Sbjct: 695 LYEQLVNDTLERAKAASPFARRGLILQMLNGIKQICNHPALYLKERSPRQLVERSHKLEK 754

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  ++E+   N    ++   +      +Q+                         + E+ 
Sbjct: 755 LVELVEQIRANDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLNGSVPKPTRDRMVDEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 815 ARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + + L  K  + D++   
Sbjct: 869 HVHKLITTGTIEEKIDEMLEQKQALADVITEG 900


>gi|116074100|ref|ZP_01471362.1| hypothetical protein RS9916_36657 [Synechococcus sp. RS9916]
 gi|116069405|gb|EAU75157.1| hypothetical protein RS9916_36657 [Synechococcus sp. RS9916]
          Length = 1060

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +        K  Q+ N      +E+   +       K++
Sbjct: 830  LYAKTVEDTLDAIARAPRGQRHGQVLGLLTKLKQICNHPALALKEEQATDDFLQRSAKLQ 889

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             LE I+++        ++   F      LQ    +             +  +    +  +
Sbjct: 890  RLEEILDEVIEAGDRALLFTQFAEWGHLLQGYLQRRWRSEVPFLSGSTSKKERQAMVDRF 949

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 950  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1003

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1004 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIIGSGE 1040


>gi|325695119|gb|EGD37021.1| Snf2 family protein [Streptococcus sanguinis SK150]
          Length = 1033

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+ ++ +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGVEAK 1016


>gi|194016601|ref|ZP_03055215.1| SNF2 family helicase [Bacillus pumilus ATCC 7061]
 gi|194012074|gb|EDW21642.1| SNF2 family helicase [Bacillus pumilus ATCC 7061]
          Length = 925

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 26/214 (12%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKI 56
            Y +  ++       L G   +A    S   +  Q+ +    Y +E            K+
Sbjct: 694 LYEQLVKDTFEHMASLTGMQRKAI-ILSMLGRLKQICDHPALYLKESGTDVKLLKRSLKM 752

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQE 103
             L  ++          ++   +      +++                 +  +    +  
Sbjct: 753 DKLAELLKAIHEQGESCLIFTQYIGMGNMIKQLAEKMFGEPVQFLNGSLSKQERDKMVDR 812

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +  +L     + G GLNL    N ++ +  WW+       +E     R  + G KR
Sbjct: 813 FQKKEFNILILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQKR 866

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ +I   TI+E + Q L TK T+ D ++ +
Sbjct: 867 FVHVHKMITTGTIEEKIDQMLETKQTLNDQIIQS 900


>gi|157150075|ref|YP_001449829.1| Snf2 family protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074869|gb|ABV09552.1| Snf2 family protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1029

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +      E N +     S  ++  Q+ +    + +E    +    K+ +L  ++
Sbjct: 812  QQMQERVRSATDEELNRDKIEILSGLMRLRQICDTPALFLDEY---QGDSGKLDSLRELL 868

Query: 64   EKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+ +     +++   F   L                                +N+G+   
Sbjct: 869  EQIHSSNHRVLIFSQFRGMLDLIEQELQSLEMESFKITGSTPAKDRQEMTTAFNDGQKDA 928

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY LI
Sbjct: 929  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQERNVEVYRLI 982

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 983  TRGTIEEKIQELQESKKNLISTILDGTESR 1012


>gi|147921752|ref|YP_684426.1| DNA/RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110619822|emb|CAJ35100.1| putative DNA/RNA helicase (SNF2 family) [uncultured methanogenic
            archaeon RC-I]
          Length = 1042

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 26/214 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEK----HWKEVHDEKI 56
             Y      +   +             +  +K  Q+ +    Y +          +   K+
Sbjct: 806  LYEAIVENMLKSIDKATAMQRRGIVLASLMKLKQVCDHPSLYIKTGAVTDDKTLIRSGKL 865

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
            K L  ++E+A      +++   F      L+                G         +  
Sbjct: 866  KRLTELLEEALAEGDSVLIFTQFVEMGEMLKAYLQSTFDEEALFLHGGVPQKARDKMVLR 925

Query: 104  W-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  +    +      + G GLNL    + +  F  WW+       +E     R  + G  
Sbjct: 926  FGEKDGPRIFIVSLKAGGVGLNLTK-ASHVFHFDRWWNPA-----VENQATDRAYRIGQS 979

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V V+  +   T++E + + + +K  +   +L 
Sbjct: 980  KNVLVHKFVCAGTLEEKIDELIESKKALSANILG 1013


>gi|163791108|ref|ZP_02185528.1| Snf2 family protein [Carnobacterium sp. AT7]
 gi|159873664|gb|EDP67748.1| Snf2 family protein [Carnobacterium sp. AT7]
          Length = 1075

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +  +E    + G           +   +  Q+      + ++    E    K++ L+
Sbjct: 852  AYLQRIQESVNSMNGAEFKKNRIEILAGLTRLRQICCDPKLFIDDY---EGDSGKLEQLK 908

Query: 61   VIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
              ++  + N   I++   F S LA ++                    +    +  +N G+
Sbjct: 909  ETVQTARENGRRILIFSQFTSMLAIIEKELAQQSVETFYLSGQTKPKERIEMVNRFNAGE 968

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL  G ++++ + LWW+       +E     R  + G K+ V V 
Sbjct: 969  KEVFLISLKAGGTGLNLT-GADMVILYDLWWNPA-----VEEQAAGRAHRIGQKKVVQVL 1022

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKETIHV 205
             LIA+ TI+E + Q  + K  + D ++    ++++E   +
Sbjct: 1023 RLIAEGTIEEKIDQLQQEKKALFDQIITEDGSIQREGSQL 1062


>gi|219668528|ref|YP_002458963.1| non-specific serine/threonine protein kinase [Desulfitobacterium
            hafniense DCB-2]
 gi|219538788|gb|ACL20527.1| Non-specific serine/threonine protein kinase [Desulfitobacterium
            hafniense DCB-2]
          Length = 1082

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + + ++  +L   G         +   +  Q+ +    + +    +     K
Sbjct: 858  KIYLAYLQQTKSQIAQELATHGFAKSQIQILAALTRLRQICSHPGMFIDNYTGE---SGK 914

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            +   + ++E +      ++V   F S L  + +                   +       
Sbjct: 915  MLLFQELLEDSLAGGHRVLVFSQFTSMLDIIGEYLHSENIDYFYLSGSTKALERSRMAAS 974

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+  +      + G GLNL  G + ++ F  WW+       +E     R  + G + 
Sbjct: 975  FNNGEGQVFLISLKAGGTGLNLT-GADTVIHFDPWWNPA-----VEDQATDRAHRIGQQN 1028

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +V V  L+ Q TI+E V      K  + D ++ 
Sbjct: 1029 SVQVIKLLTQGTIEEKVNALQAKKKKLIDSVIQ 1061


>gi|226305488|ref|YP_002765448.1| helicase [Rhodococcus erythropolis PR4]
 gi|226184605|dbj|BAH32709.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 609

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     + +    G  I    N  +      Q+ N       +         K+    
Sbjct: 378 RIYRSAVADAFDTGLGTGIARRGNILALLTTLKQVCNHPAQVTGDTDDLYGRSGKLDRAT 437

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKDPCTIQEWNE 106
            +I +   +    ++   + +    L +                G   DK    +  +  
Sbjct: 438 EMIAEIVDDGDRALIFTQYRTMGEMLSRHLGSELGIGAIPFLHGGLNTDKRDAMVDAFQN 497

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P+L     + G GLNL    + +V +  WW+       +E     R  + G KR 
Sbjct: 498 DTDSPPVLILSLRAAGFGLNLTR-ASHVVHYDRWWNPA-----VEDQATDRAHRIGQKRT 551

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V V+ L+   T+++ +     +K  + D +
Sbjct: 552 VNVHTLVTGGTVEDHIAAMHESKRAVADAV 581


>gi|171780271|ref|ZP_02921175.1| hypothetical protein STRINF_02059 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281619|gb|EDT47054.1| hypothetical protein STRINF_02059 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1027

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +     +    K+ +L  +
Sbjct: 812  RQMQ-ETIAGASDADINRRKIEILSGITRLRQICDTPALFMDY----QGESGKLDSLRDL 866

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F   L   +                   +      + +N G   
Sbjct: 867  LTQIKENGHRALIFSQFRGMLDIAEKEIEEIGLTSYKITGSTPANARQEMTRAFNNGSKD 926

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 927  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKENVEVYRL 980

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 981  ITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|319950443|ref|ZP_08024358.1| helicase [Dietzia cinnamea P4]
 gi|319435907|gb|EFV91112.1| helicase [Dietzia cinnamea P4]
          Length = 935

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     ++   ++     A      S      Q+ N   +Y  +             K+
Sbjct: 700 LYQAVVEDMMEQVKESEGTARKGAILSGLTALKQVCNHPAHYLGDGSALLRGGRHRSGKL 759

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQE 103
            AL+ ++ +       +++   + +    +                 G T       ++E
Sbjct: 760 AALDEVLTEILDAGEKVLLFTQYRAFGDLILPLLERRAASSVPFLHGGVTAAGRAQMVEE 819

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   +  P++ A   + G GL L    N +V    WW+       +E     R  + G  
Sbjct: 820 FQSTQGPPVMLASLRAGGTGLTLTE-ANHVVHLDRWWNPA-----VENQATDRVHRIGQT 873

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R V V  L+A  T+++ + + L  K  + +L L  L      +
Sbjct: 874 RRVQVRTLVAPGTVEDRIDELLEAKRDLAELTLGPLAGALTEL 916


>gi|325299080|ref|YP_004258997.1| SNF2-like protein [Bacteroides salanitronis DSM 18170]
 gi|324318633|gb|ADY36524.1| SNF2-related protein [Bacteroides salanitronis DSM 18170]
          Length = 1168

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 77/219 (35%), Gaps = 28/219 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--------SASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
             YH+       +++G +                  +   Q+ N    + +  + +     
Sbjct: 940  LYHRTLEAAMAEIKGIDTTDHESLFKRQGLILQMILALKQICNHPAQFLKNGNARIELFG 999

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTI 101
            K + L   +    AN   ++V   F              L +    +  G  + +    +
Sbjct: 1000 KAEMLLDRLEGIVANGEKVLVFTQFREMGDLLVRFIEERLGQHPLFYHGGCCVKQRQEMV 1059

Query: 102  QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +   +   +      + G GLNL    + ++ + LWW+       +E     R  + G
Sbjct: 1060 ERFQNLRSDKIFILSLKAAGTGLNLTA-ASHVIHYDLWWNPA-----VEAQATDRAYRIG 1113

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +R V V+  I ++T +E +   ++ K  + D+ + + +
Sbjct: 1114 QQRNVMVHRFITKDTFEERINDMIQQKKHLADMTVASGE 1152


>gi|255020423|ref|ZP_05292489.1| helicase, SNF2 family [Acidithiobacillus caldus ATCC 51756]
 gi|254970136|gb|EET27632.1| helicase, SNF2 family [Acidithiobacillus caldus ATCC 51756]
          Length = 1165

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKA 58
             Y    RE    ++GE+             +   Q+ N   +Y  E+         K   
Sbjct: 939  LYESVVRESLQVIRGESDTFHRKGLVLQMILALKQVCNHPAHYLKEQGDRGPSISGKASL 998

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN 105
            L  ++E    N    ++   F      L+                G T  +    + ++ 
Sbjct: 999  LLDLLEPILANHEKCLIFTQFREMGELLRPWIREATGHLPPFLHGGVTRKQRDVMVDKFQ 1058

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + +  +L     + G GLNL    + +V + LWW+       +E     R  + G +R 
Sbjct: 1059 QDPRERILILSLKAGGTGLNLTA-ASHVVHYDLWWNPA-----VEAQATDRAYRIGQQRN 1112

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+ LI + T +E + + ++TK  + +L + A ++
Sbjct: 1113 VQVHRLITRATFEERINELMKTKRDLANLTVGAGEQ 1148


>gi|291457361|ref|ZP_06596751.1| protein, SNF2 family [Bifidobacterium breve DSM 20213]
 gi|291381196|gb|EFE88714.1| protein, SNF2 family [Bifidobacterium breve DSM 20213]
          Length = 1358

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L+               ++  +  Q+         +   +     K+
Sbjct: 1121 KLYAAHEQRLRMQLEHSEEAEFNTSKIRILAELTRLRQICCDPRLLYADAKDQ---SAKL 1177

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++          ++   F S L                        K    + ++
Sbjct: 1178 AAIAELVETCVNEGKKALIFSQFTSFLDLIAERFDAQGLRYYTITGSTPKRKRLELVDQF 1237

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P       +   GLNL  G ++++    WW+     Q        R  + G    
Sbjct: 1238 NADDTPAFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQDQA-----ADRAHRIGQTED 1291

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+   TKS +     +A
Sbjct: 1292 VNVYQVVAKDTIEERILELQHTKSELARQFTDA 1324


>gi|325475354|gb|EGC78539.1| Snf2 family protein [Treponema denticola F0402]
          Length = 1216

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 23/216 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y          + G   +               Q+ N    YD+E   +  +  K  
Sbjct: 990  LAIYENLVETELHKVMGAETKIERQAYVLKLLTALKQVCNHPRAYDKETPVEMKYSGKAA 1049

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             L  ++ +  ++    I+   +   L  L+                     K    +  +
Sbjct: 1050 LLIELLNEIISSGEKAIIFSQYVGTLDILKNIIQKELGTEPLLLHGQMPASKRKKAVDVF 1109

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G GLNL    N ++ F LW++       +E     R  + G  +
Sbjct: 1110 QTDPAYRIFLISLKAGGTGLNLTA-ANRVIHFDLWYNPA-----VEDQATDRAFRIGQTK 1163

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VFV+ LI   T +E + + ++ K  I  + ++A +
Sbjct: 1164 NVFVHRLICSGTFEEKIDEMIQKKREISGMSISAGE 1199


>gi|281355238|ref|ZP_06241732.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
 gi|281318118|gb|EFB02138.1| SNF2-related protein [Victivallis vadensis ATCC BAA-548]
          Length = 884

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 22/211 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +    +  +L+   E  +        ++  QL N    Y  E  +K     K   L 
Sbjct: 653 LYQQVVDRMRRELEAADEFQKKGVVLKSLMQFKQLCNHPAQYTGEGDFKAEESGKFLELA 712

Query: 61  VI--IEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            +          ++V   F                R       G ++      ++ +  E
Sbjct: 713 ELAEKIAMKQEKVLVFTQFREMTDPLHELLSRVFGRPGLILHGGTSIRARARLVEAFQKE 772

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GLNL    + ++ F  WW+       +E     R  + G  R V 
Sbjct: 773 EGPPFFVLSLKAAGTGLNLTA-ASHVIHFDRWWNPA-----VENQATDRAYRIGQHRNVL 826

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  I   TI+E +   + +K  + D ++ +
Sbjct: 827 VHKFICSGTIEEKINSLIWSKRKLADSVVTS 857


>gi|138896831|ref|YP_001127284.1| helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134268344|gb|ABO68539.1| Helicase, putative [Geobacillus thermodenitrificans NG80-2]
          Length = 926

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +   +     +  +  A             Q+ N    Y +E+  +++     K++ 
Sbjct: 695 LYEQLVNDTLERAKAASPFARRGLILQMLNGIKQICNHPALYLKERSPRQLVERSHKLEK 754

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  ++E+   N    ++   +      +Q+                         + E+ 
Sbjct: 755 LVELVEQIRANDESCLIFTQYVRMGEMIQELLSDLFDEPVLFLNGSVPKPTRDRMVDEFQ 814

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 815 ARKAPIFLLSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 868

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E + + L  K  + D++   
Sbjct: 869 HVHKLITTGTIEEKIDEMLEQKQALADVITEG 900


>gi|119357048|ref|YP_911692.1| SNF2-related protein [Chlorobium phaeobacteroides DSM 266]
 gi|119354397|gb|ABL65268.1| SNF2-related protein [Chlorobium phaeobacteroides DSM 266]
          Length = 1007

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 34/228 (14%)

Query: 1   MKQYHKFQRE-------LYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKH 47
           MKQY    RE       +  +LQ +   A          +  VK  Q+ N  V +  +  
Sbjct: 763 MKQYCTLTREQASLYKAVIDELQEKIETAEGIDRRGLVLALLVKLKQVCNHPVQFLGDNS 822

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTL 94
             E    K++ L  ++ +        +V   F                          + 
Sbjct: 823 SVEHRSGKLQRLTELLSEIRECGQRTLVFTQFMEMGKILQRYLQELFGEEVFFLHGSLSR 882

Query: 95  DKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            K    I  + +G+    +      + G  LNL    N +V +  WW+       +E   
Sbjct: 883 KKRDAMIDAFQQGEHAPHIFILSLKAGGSCLNLTN-ANHVVHYDRWWNPA-----VENQA 936

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             R  + G KR V V+  I   T++E + + +  K  +   +L   ++
Sbjct: 937 TDRAFRIGQKRNVEVHKFITAGTLEERIDEMIDKKRAVSGSVLGTGEQ 984


>gi|187919690|ref|YP_001888721.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
 gi|187718128|gb|ACD19351.1| Non-specific serine/threonine protein kinase [Burkholderia
            phytofirmans PsJN]
          Length = 1155

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 42/234 (17%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKE------ 50
             Y       Q ++   +  + +   +       +K  Q+          K   E      
Sbjct: 904  LYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVKTLKAAAEANDVPE 963

Query: 51   --------------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-------- 86
                          +   K+  L  ++ +       +++   F   L+ + +        
Sbjct: 964  KSDRTGKIEKGARAMRSAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAQALEEVGIP 1023

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                          ++ + +G++PL      + G GLNL    + ++ +  WW+      
Sbjct: 1024 YMMLTGDTTDRVTPVERFQKGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA--- 1079

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              E     R  + G  + VFVY LIA  +I+E +++    K+ + D +L+    
Sbjct: 1080 --ENQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAA 1131


>gi|309812493|ref|ZP_07706246.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308433548|gb|EFP57427.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
          Length = 1119

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 21/210 (10%)

Query: 2    KQYHK-FQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y +  +RE   L   L+  +       +   +  +LA      D+E   + V   K++
Sbjct: 899  RVYKRHLRREQQRLMGLLKDPDANRVEILAALTRLRRLALDPALVDDEFAGRSV-SRKVE 957

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             +   + +        +V   F   LA +++              +       + E+  G
Sbjct: 958  TVVQQLAEIAAEGHRALVFSQFTDFLAIVREAAADAGVSTTYLDGSTRNRQQVVDEFKSG 1017

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +    F    + G GL L    + ++    WW+        E   + R  + G  + V V
Sbjct: 1018 EADAFFISLKAGGTGLTLTE-ADYVIVLDPWWNPAA-----EDQAIDRAHRIGQTKHVMV 1071

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y  ++  TI+E V++    K  + D +++A
Sbjct: 1072 YRYVSAGTIEEKVMELQEKKRKLFDDVVDA 1101


>gi|269119290|ref|YP_003307467.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
 gi|268613168|gb|ACZ07536.1| SNF2-related protein [Sebaldella termitidis ATCC 33386]
          Length = 1125

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 8    QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++E+  +++ E +        S   +  Q+      + +         E +  L   +  
Sbjct: 912  KKEIENEIKNEKLSRSQIKIFSLLTRLRQICCHPKLFIDNYAHSSGKFETLFELFDDLIS 971

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
             N    +V   F + L                             +  +N G  P+    
Sbjct: 972  GNH-KTLVFSQFTTMLKLISGELKKKGIEHFYLDGSMKARDRLELVNSFNAGNTPIFLIS 1030

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL  G + ++    WW+       +E     R  + G K +V V  LI + T
Sbjct: 1031 LKAGGTGLNLT-GSDTVIHVDPWWNPS-----VENQASDRSHRIGQKNSVQVIKLITKGT 1084

Query: 176  IDELVLQRLRTKSTIQDLLLNA 197
            I+E +++    K  + D +L +
Sbjct: 1085 IEEKIMKLQNKKKKLIDNVLTS 1106


>gi|266620561|ref|ZP_06113496.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
 gi|288867854|gb|EFD00153.1| SNF2 family protein [Clostridium hathewayi DSM 13479]
          Length = 1154

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 26/211 (12%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y    ++L   L  ++     +      ++     QL        E  +       K+
Sbjct: 924  EIYEARVQKLLDSLSKQSQEEFRVGKLQILAELTHLRQLCCDPSLVYENYN---GGAAKV 980

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEW 104
                 +++        I++   F S L  +                  + +K    ++ +
Sbjct: 981  DTCVELVKNAVEAGNKILLFSQFTSMLDIIRKRLDEEEIGYYILTGAVSKEKRSELVRAF 1040

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            NE   P+      + G GLNL    +I++ F  WW+              R  + G ++ 
Sbjct: 1041 NEDDTPVFLISLKAGGTGLNLTA-ASIVIHFDPWWNQAAQ-----NQATDRAHRIGQQQV 1094

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V VY LI ++T++E +L+    K+ + + ++
Sbjct: 1095 VTVYKLIMKDTLEEKILEMQEKKAGLSEEII 1125


>gi|262203175|ref|YP_003274383.1| SNF2-like protein [Gordonia bronchialis DSM 43247]
 gi|262086522|gb|ACY22490.1| SNF2-related protein [Gordonia bronchialis DSM 43247]
          Length = 988

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 27/218 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     EL   L+ +   A    N  +   +  Q+ N   +Y  +              
Sbjct: 753 LYRAVIDELMEALRDKQQRALRRRNVLAALTRLKQICNHPAHYLADGTAMAPRGRHRSGK 812

Query: 60  EVIIEK------ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQ 102
             ++              +V   F              L         G    +    + 
Sbjct: 813 VELLADTLTTLIDEGDRALVFTQFAAFGEMLSGWLTDTLGTEIPLLHGGLGRSERDRMVA 872

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  +   P++ A   + G GLNL    N +V    WW+       +E     R  + G 
Sbjct: 873 GFQGDDGPPVMLATLKAGGTGLNLTA-ANHVVHVDRWWNPA-----VEDQATDRAYRIGQ 926

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + V V+  I   TI+E +   +  K  +  L + A +
Sbjct: 927 DQRVDVHRFICVGTIEERIDDMITRKRELSQLTVAAGE 964


>gi|262200392|ref|YP_003271600.1| SNF2-like protein [Gordonia bronchialis DSM 43247]
 gi|262083739|gb|ACY19707.1| SNF2-related protein [Gordonia bronchialis DSM 43247]
          Length = 1159

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 24/214 (11%)

Query: 2    KQYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y      +R+    L G+     F          QL+  A   D       V+  K+ 
Sbjct: 938  KIYDTRLARERQKVLGLLGDWEKNRFQVFRSLSMLRQLSLHAALVD--SSHDSVNSAKVD 995

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
             L   +          +V   F   L  L+                 +  +    +Q + 
Sbjct: 996  YLIEQLPGLVDEGHSSLVFSQFTGFLDILRAHLDAEGIVYSYLDGSMSAKQRAAAVQRFR 1055

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G   +      + G GLNL    +       WW+        E   V R  + G +R V
Sbjct: 1056 SGAAQVFLISLKAGGFGLNLTE-ADYCFVCDPWWNPAA-----EAQAVDRAHRIGQQRPV 1109

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VY L++ +TI+E V++    K  + D +++  +
Sbjct: 1110 NVYRLVSADTIEERVVRLQERKRALFDAVVDDGE 1143


>gi|146308259|ref|YP_001188724.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
 gi|145576460|gb|ABP85992.1| Non-specific serine/threonine protein kinase [Pseudomonas mendocina
           ymp]
          Length = 876

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 76/211 (36%), Gaps = 23/211 (10%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHW-KEVHDEKI 56
           Y   +    +++  ++  + +   +       ++  Q         +           K+
Sbjct: 651 YETLRLAMDQKVRDEIARQGLARSHIVILEALLRLRQSCCDLRLLGDAGSQLTAADSGKL 710

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWNE 106
            AL  ++E+       +++   F S LA        R         +       ++ +  
Sbjct: 711 SALLDMLEELVDEGRRVLLFSQFTSMLALIEAELQARKIAYAKLTGSTQDRRTPVERFQA 770

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+ P+      + G GLNL    + ++ F  WW+        E     R  + G  + VF
Sbjct: 771 GEFPVFLISLKAGGSGLNLTA-ADTVIHFDPWWNPAA-----EAQASDRAYRIGQDKPVF 824

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VY LI + +++E + Q  + K+++   +L  
Sbjct: 825 VYKLITRGSVEEKIQQLQQAKASLARGVLEG 855


>gi|261209238|ref|ZP_05923630.1| Snf2 family protein [Enterococcus faecium TC 6]
 gi|289565987|ref|ZP_06446425.1| Snf2 family protein [Enterococcus faecium D344SRF]
 gi|294616209|ref|ZP_06696006.1| Snf2 family protein [Enterococcus faecium E1636]
 gi|260076784|gb|EEW64519.1| Snf2 family protein [Enterococcus faecium TC 6]
 gi|289162185|gb|EFD10047.1| Snf2 family protein [Enterococcus faecium D344SRF]
 gi|291590964|gb|EFF22676.1| Snf2 family protein [Enterococcus faecium E1636]
          Length = 1064

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 78/214 (36%), Gaps = 22/214 (10%)

Query: 5    HKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + + E+   D +          +   +  Q+      + E+    +    K++ ++ ++
Sbjct: 844  RQMREEIISMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLEQVKDLL 900

Query: 64   E--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K N   +++   F   L  LQ                         +  +N G+  +
Sbjct: 901  VAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFNTGEKDV 960

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+       IE     R  + G K  V V+ +I
Sbjct: 961  FLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVVEVWRMI 1014

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++ TI+E +    + K  +   ++   +++   +
Sbjct: 1015 SEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|237805059|ref|YP_002889213.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273359|emb|CAX10274.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1163

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++++
Sbjct: 1128 LSLQNRKKGLVKKVIDS 1144


>gi|76789448|ref|YP_328534.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
 gi|76167978|gb|AAX50986.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]
          Length = 1163

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++++
Sbjct: 1128 LSLQNRKKGLVKKVIDS 1144


>gi|295424920|ref|ZP_06817632.1| possible non-specific serine/threonine protein kinase [Lactobacillus
            amylolyticus DSM 11664]
 gi|295065359|gb|EFG56255.1| possible non-specific serine/threonine protein kinase [Lactobacillus
            amylolyticus DSM 11664]
          Length = 1090

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 27/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y    ++L   L  ++ +      F   +   K  +L        E+         K+
Sbjct: 867  ELYQAQTQKLIAQLNKQDDKDFKKQRFQVLAAITKLRELCCDPHLLYEDYR---GKSAKL 923

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
             A   +IE +  +   I++   F S L  +++   Q               K    I+++
Sbjct: 924  AATMELIEDSIADGHKILLFSQFTSMLELIEQKLKQAKIVTFVITGSTPKQKRQELIKQF 983

Query: 105  NE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+     +      + G G+NL    ++++ +  WW++       E     R  + G K 
Sbjct: 984  NKLDHPAIFLISLKAGGTGINLTS-ADVVIHYDPWWNVAA-----ENQATDRAHRIGQKH 1037

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V +Y ++A+ TI+E +++    K  + D +L+ 
Sbjct: 1038 NVQIYKMVAKGTIEEKIVELQERKEKLADEVLSG 1071


>gi|237803138|ref|YP_002888332.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274372|emb|CAX11167.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 1163

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++++
Sbjct: 1128 LSLQNRKKGLVKKVIDS 1144


>gi|256827746|ref|YP_003151705.1| DNA/RNA helicase, superfamily II, SNF2 family [Cryptobacterium curtum
            DSM 15641]
 gi|256583889|gb|ACU95023.1| DNA/RNA helicase, superfamily II, SNF2 family [Cryptobacterium curtum
            DSM 15641]
          Length = 1102

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 26/212 (12%)

Query: 3    QYHKFQ---RELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y   +   R+                  ++  +  QL        ++         K+ 
Sbjct: 881  LYQAHEARLRQSIKSTDDARFSTGKLEVLAEITRLRQLCCDPALVYDDYR---GPASKLD 937

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWN 105
            A+  I+E  +      +V   F S L+R+                          +  +N
Sbjct: 938  AIADIVEGSRDAGEKTLVFSQFTSFLSRIAQRLDEMDIAYHTITGATPKQTRVQLVNAFN 997

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              ++P+      + G GLNL  G +++V    WW+        E     R  + G KR V
Sbjct: 998  SDEVPVFLISLKAGGTGLNLT-GASVVVHADPWWNAAA-----EDQATDRAHRIGQKRDV 1051

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             VY LI  +TI+E +++   TK T  D ++ A
Sbjct: 1052 TVYKLIEHDTIEERIVKLQETKHTFVDQIIGA 1083


>gi|71910102|ref|YP_281652.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS5005]
 gi|71852884|gb|AAZ50907.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS5005]
          Length = 1032

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGKSGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|311032686|ref|ZP_07710776.1| SWF/SNF family helicase [Bacillus sp. m3-13]
          Length = 1044

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 27/217 (12%)

Query: 2    KQYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     K + +    L  + +        +   +  Q+      +            K
Sbjct: 821  KLYAAYLAKLRHDTLKHLNKDTLRKNKIRILAGLTRLRQICCHPSLFVNGYK---GSSAK 877

Query: 56   IKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             + L  +IE++      +++   F   L                       ++     + 
Sbjct: 878  FEMLLQLIEESQRSGRRVLIFSQFTKMLELIGRELAYQGLPYFYLDGQTPSEERVERCER 937

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N G+         + G GLNL  G + ++ + LWW+       +E     R  + G  +
Sbjct: 938  FNSGERDFFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAADRAHRMGQTQ 991

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V  L+A+ TI+E + +    K  + + +++  ++
Sbjct: 992  TVQVIKLVARGTIEEKMNELQDKKRHLIEEIIDPDER 1028


>gi|113955603|ref|YP_731958.1| helicase [Synechococcus sp. CC9311]
 gi|113882954|gb|ABI47912.1| helicase, Snf2 family protein [Synechococcus sp. CC9311]
          Length = 1064

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +        K  Q+ N      +E+   E       K++
Sbjct: 832  LYAKTVEDTLDAIARAPRGKRHGQVLGLLTKLKQICNHPALALKEQGASEDFLKRSVKLQ 891

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             LE I+++        ++   F      LQ    +             +  +    +  +
Sbjct: 892  RLEEILDEVVEAGDRALLFTQFAEWGKLLQDYLQRRWRSEVPFLSGSTSKSERQAMVDRF 951

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 952  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1005

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1006 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIIGSGE 1042


>gi|15674499|ref|NP_268673.1| putative SNF helicase [Streptococcus pyogenes M1 GAS]
 gi|13621600|gb|AAK33394.1| putative SNF helicase [Streptococcus pyogenes M1 GAS]
          Length = 1032

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGKSGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|306824889|ref|ZP_07458233.1| Snf2 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433100|gb|EFM36072.1| Snf2 family protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 1031

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + +          K+ +L  +
Sbjct: 812  QQM-RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDNYQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L ++++  P                      + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPNLGLTSFKITGSTPAQDRQEMTKIFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY L
Sbjct: 928  IFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQERKVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITRGTIEEKIQELQEQKKHLISQVLDGTESR 1012


>gi|71902946|ref|YP_279749.1| phage-related DNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71802041|gb|AAX71394.1| phage-related DNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 1032

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            MK   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L 
Sbjct: 818  MK--DQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGKSGKLDSLR 868

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
            +++ +   N    ++   F   L   +                   ++     + +N G 
Sbjct: 869  ILLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGS 928

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                     + G G+NL  G + ++   LWW+            ++R  + G K  V VY
Sbjct: 929  KDAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVY 982

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 983  RLITRGTIEEKILELQESKRNLVTTVLDGNENR 1015


>gi|225867923|ref|YP_002743871.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225701199|emb|CAW98123.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 1034

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  L      +         S   +  Q+ +    + +     +    K+  L  ++
Sbjct: 819  RQMQERLSAATDDDIHRSKLEILSGITRLRQICDTPSLFMDY----QGGSGKLDNLRTLL 874

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
               K N    ++   F   LA +++   Q              +      + +N G    
Sbjct: 875  LQIKENGHRTLLFSQFKGMLALVKQEMDQLGLSSYTITGSTPANDRQEMTRAFNNGSKDA 934

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G +  V VY LI
Sbjct: 935  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYRLI 988

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 989  TRGTIEEKMLELQENKRHLITTVLDG 1014


>gi|302874211|ref|YP_003842844.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|307689525|ref|ZP_07631971.1| SNF2-related protein [Clostridium cellulovorans 743B]
 gi|302577068|gb|ADL51080.1| SNF2-related protein [Clostridium cellulovorans 743B]
          Length = 1078

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  + + +  +L  E              +   +  Q+      + ++         K
Sbjct: 853  KLYFAYVKHIQGELDDEVKEKGFNNSKIKILAALTRLRQICCDPASFLDDYK---GGSGK 909

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
             +AL  ++ +       +++   F S L              K         +    + E
Sbjct: 910  YEALSEVLAEVLAGNHKVLLFSQFTSVLKNIEKLLTKNKITYKYLDGSTKSQERLKIVDE 969

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N     +      + G GLNL  G ++++ F  WW+       +E     R  + G K 
Sbjct: 970  FNNDDSQVFLISLKAGGTGLNLT-GADVVIHFDPWWNPS-----VENQATDRAHRIGQKN 1023

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  LI++ TI+E + +  R K+ +   +L+ 
Sbjct: 1024 TVEVIKLISKGTIEEKIEKLQRKKTEVIKNVLDE 1057


>gi|294619479|ref|ZP_06698922.1| Snf2 family protein [Enterococcus faecium E1679]
 gi|291594275|gb|EFF25706.1| Snf2 family protein [Enterococcus faecium E1679]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|310828799|ref|YP_003961156.1| hypothetical protein ELI_3224 [Eubacterium limosum KIST612]
 gi|308740533|gb|ADO38193.1| hypothetical protein ELI_3224 [Eubacterium limosum KIST612]
          Length = 573

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 31/224 (13%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVY--------YDEEKHWKEVH 52
           + Y    ++   +L     + A +  ++ ++  Q+  G V                  + 
Sbjct: 349 RAYRDLVKDSIAELDNLPAVTAQHVITQLLRLSQICGGFVKLDTEGYENDPNAGKLIPIS 408

Query: 53  DEKIKALEVIIEK---ANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDK 96
             KIK  E ++          ++V   F +++                +          +
Sbjct: 409 KAKIKLFEELLGDLLSVEGKKVVVFARFTAEIKLLREVLEKQLGADGYRMIDGSVPKDVR 468

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                       I +  A   + G G+ L      + ++S  +    ++         R 
Sbjct: 469 GEYVEDFQKNPAIRVFLAQIQTAGLGITLTAADTTV-YYSTDYSYAAYE-----QSRART 522

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G K      +L+ ++T+DE +L+ L  K +I DL ++  +K
Sbjct: 523 HRIGQKNNCTYIHLVVKDTVDEKILEALSQKKSIADLCVDNYQK 566


>gi|257885356|ref|ZP_05665009.1| Snf2 family protein [Enterococcus faecium 1,231,501]
 gi|257821212|gb|EEV48342.1| Snf2 family protein [Enterococcus faecium 1,231,501]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|69247670|ref|ZP_00604446.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
            helicase, N-terminal [Enterococcus faecium DO]
 gi|257882164|ref|ZP_05661817.1| Snf2 family protein [Enterococcus faecium 1,231,502]
 gi|258614743|ref|ZP_05712513.1| Snf2 family protein [Enterococcus faecium DO]
 gi|260562387|ref|ZP_05832901.1| Snf2 family protein [Enterococcus faecium C68]
 gi|293559937|ref|ZP_06676447.1| Snf2 family protein [Enterococcus faecium E1162]
 gi|294621010|ref|ZP_06700206.1| Snf2 family protein [Enterococcus faecium U0317]
 gi|314937677|ref|ZP_07845002.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
 gi|314940927|ref|ZP_07847833.1| protein, SNF2 family [Enterococcus faecium TX0133C]
 gi|314948052|ref|ZP_07851454.1| protein, SNF2 family [Enterococcus faecium TX0082]
 gi|314952331|ref|ZP_07855341.1| protein, SNF2 family [Enterococcus faecium TX0133A]
 gi|314991945|ref|ZP_07857400.1| protein, SNF2 family [Enterococcus faecium TX0133B]
 gi|314995203|ref|ZP_07860317.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
 gi|68194742|gb|EAN09222.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
            helicase, N-terminal [Enterococcus faecium DO]
 gi|257817822|gb|EEV45150.1| Snf2 family protein [Enterococcus faecium 1,231,502]
 gi|260073311|gb|EEW61652.1| Snf2 family protein [Enterococcus faecium C68]
 gi|291599410|gb|EFF30431.1| Snf2 family protein [Enterococcus faecium U0317]
 gi|291606102|gb|EFF35526.1| Snf2 family protein [Enterococcus faecium E1162]
 gi|313590612|gb|EFR69457.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
 gi|313593529|gb|EFR72374.1| protein, SNF2 family [Enterococcus faecium TX0133B]
 gi|313595546|gb|EFR74391.1| protein, SNF2 family [Enterococcus faecium TX0133A]
 gi|313600285|gb|EFR79128.1| protein, SNF2 family [Enterococcus faecium TX0133C]
 gi|313642950|gb|EFS07530.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
 gi|313645468|gb|EFS10048.1| protein, SNF2 family [Enterococcus faecium TX0082]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|293568350|ref|ZP_06679673.1| Snf2 family protein [Enterococcus faecium E1071]
 gi|291588959|gb|EFF20784.1| Snf2 family protein [Enterococcus faecium E1071]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|42525525|ref|NP_970623.1| Snf2 family protein [Treponema denticola ATCC 35405]
 gi|41815536|gb|AAS10504.1| Snf2 family protein [Treponema denticola ATCC 35405]
          Length = 1194

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 23/216 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y          + G   +               Q+ N    YD+E   +  +  K  
Sbjct: 968  LAIYENLVETELHKVMGAETKIERQAYVLKLLTALKQVCNHPRAYDKETPIEMKYSGKAA 1027

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
             L  ++ +  ++    I+   +   L  L+                     K    ++ +
Sbjct: 1028 VLIELLNEIISSGEKAIIFSQYVGTLDILKNIIQKELGTEPLLLHGQMPASKRKKAVEVF 1087

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +    +      + G GLNL    N ++ F LW++       +E     R  + G  +
Sbjct: 1088 QTDSAYRIFLISLKAGGTGLNLTA-ANRVIHFDLWYNPA-----VEDQATDRAFRIGQTK 1141

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VFV+ LI   T +E + + ++ K  I  + ++A +
Sbjct: 1142 NVFVHRLICSGTFEEKIDEMIQKKREISGMSISAGE 1177


>gi|170693768|ref|ZP_02884925.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
 gi|170141186|gb|EDT09357.1| Non-specific serine/threonine protein kinase [Burkholderia graminis
            C4D1M]
          Length = 1162

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 44/236 (18%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYD------------- 43
             Y       Q  +   +  + +   +       +K  Q+                     
Sbjct: 909  LYETVRTAMQERVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTLRTAQNVGEVSE 968

Query: 44   ---------EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR 92
                      +K  K V   K+  L  ++ +       +++   F   L+ + +A  +  
Sbjct: 969  GSSTQTARASDKTEKGVRSAKLDLLLSMLPELIDEGRRVLLFSQFTGMLSLIAQALDEAA 1028

Query: 93   TLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                            +Q + +G++PL      + G GLNL    + ++ +  WW+    
Sbjct: 1029 IPYVILTGDTTDRVTPVQRFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA- 1086

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                E     R  + G  + VFVY LIA  +I+E +++    K+ + D +L+    
Sbjct: 1087 ----ENQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAA 1138


>gi|322391674|ref|ZP_08065142.1| Snf2 family protein [Streptococcus peroris ATCC 700780]
 gi|321145485|gb|EFX40878.1| Snf2 family protein [Streptococcus peroris ATCC 700780]
          Length = 1032

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 82/212 (38%), Gaps = 24/212 (11%)

Query: 5    HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q  L    +L+          +  ++  Q+ +    +    +  +    K+ +L  +
Sbjct: 813  QQMQEHLGKVTELE-FQRNRVEILTGLMRLRQICDTPALFM---NDYQGDSGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L R+++  P                +     + +N+G+  
Sbjct: 869  LNQIGEANHRVLIFSQFRGMLDRIEQELPHIGLTSFKITGSTPSQERQEMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL  G + ++   LWW+       +E   ++R  + G ++AV VY L
Sbjct: 929  VFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VESQAISRAHRMGQEQAVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTRGTIEEKIQELQEQKKNLVSEVLDGTESRG 1014


>gi|257880309|ref|ZP_05659962.1| Snf2 family protein [Enterococcus faecium 1,230,933]
 gi|257890968|ref|ZP_05670621.1| Snf2 family protein [Enterococcus faecium 1,231,410]
 gi|257894223|ref|ZP_05673876.1| Snf2 family protein [Enterococcus faecium 1,231,408]
 gi|257814537|gb|EEV43295.1| Snf2 family protein [Enterococcus faecium 1,230,933]
 gi|257827328|gb|EEV53954.1| Snf2 family protein [Enterococcus faecium 1,231,410]
 gi|257830602|gb|EEV57209.1| Snf2 family protein [Enterococcus faecium 1,231,408]
          Length = 1067

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 897

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1051


>gi|323126628|gb|ADX23925.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1030

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+    IE     S   +  Q+ +    + +     +    K+++L  
Sbjct: 816  QMQDQIRTASDADINRRKIE---ILSGITRLRQICDTPSLFMDY----DGESGKLESLRT 868

Query: 62   II--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++   K N    ++   F   L   +                   ++     + +N G  
Sbjct: 869  LLLQIKENGHRALIFSQFRGMLDLAKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSK 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL  G + +V   LWW+            ++R  + G +  V VY 
Sbjct: 929  DAFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 983  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1014


>gi|319938677|ref|ZP_08013041.1| Snf2 family protein [Streptococcus anginosus 1_2_62CV]
 gi|319811727|gb|EFW07993.1| Snf2 family protein [Streptococcus anginosus 1_2_62CV]
          Length = 1036

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 18/208 (8%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E N       S  ++  Q+ +    + E+ H +    E +  L   I
Sbjct: 815  KQMQERVLASTEEELNRSKMEILSGLMRLRQICDTPALFMEDYHGESGKLESLLELLEQI 874

Query: 64   EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +  +   +++   F   L                        +       +N G+     
Sbjct: 875  QTGSH-RVLIFSQFRGMLDIIEKELKKMKMEAFKITGSTPAKERQEMTNAFNNGEGDAFL 933

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY LI +
Sbjct: 934  ISLKAGGVGLNLT-GADTVILVDLWWNPA-----VESQAIGRAHRMGQERNVEVYRLITR 987

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKE 201
             TI+E + +   +K  +   +L+  +  
Sbjct: 988  GTIEEKIQELQESKRHLVSTILDGTESR 1015


>gi|148240736|ref|YP_001226123.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147849275|emb|CAK24826.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH
            7803]
          Length = 1070

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y K   +    +        +        +  Q+ N      +E+   +       K++
Sbjct: 835  LYAKTVEDTLDAIARAPRGKRHGQVLGLLTRLKQICNHPALALKEEVASDDFLQRSVKLQ 894

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             LE I+++        ++   F      LQ    +             +  +    +  +
Sbjct: 895  RLEEILDEVIEAGDRALLFTQFAEWGHLLQGYLQRRWRSEVPFLSGSTSKGERQAMVDRF 954

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 955  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1008

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V V+  I   +++E + + +R KS + + ++ + ++
Sbjct: 1009 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIVGSGEE 1046


>gi|227552615|ref|ZP_03982664.1| Snf2 family helicase [Enterococcus faecium TX1330]
 gi|227178241|gb|EEI59213.1| Snf2 family helicase [Enterococcus faecium TX1330]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|330944324|gb|EGH46382.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 468

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 83/204 (40%), Gaps = 20/204 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 271 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 330

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 331 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 390

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 391 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 444

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
           A+ T++E + +  R KS +   +L
Sbjct: 445 ARGTVEEKIQRLQREKSALASGVL 468


>gi|330469460|ref|YP_004407203.1| non-specific serine/threonine protein kinase [Verrucosispora maris
            AB-18-032]
 gi|328812431|gb|AEB46603.1| non-specific serine/threonine protein kinase [Verrucosispora maris
            AB-18-032]
          Length = 1040

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++   ++            +   +  Q+ N       +         K+  LE
Sbjct: 810  LYQVVVDDMMARIEASEGIERRGLVLATMTRLKQVCNHPAQLLRDGSALAGRSGKLARLE 869

Query: 61   VIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
             I+++        ++   +                R       G         +  +   
Sbjct: 870  EILDEVLAAGEKALLFTQYAEFGGMLRGHLSARFGREVLFLHGGLGKADRDEMVTRFQSD 929

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P L      + G GL L    N +V    WW+       +E     R  + G +R V 
Sbjct: 930  DGPALFVLSLKAGGTGLTLTA-ANHVVHVDRWWNPA-----VEDQATDRAFRIGQRRRVQ 983

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V   +   T++E V   +  K ++   ++   ++
Sbjct: 984  VRKFVCAGTVEEKVAALIADKRSLAASVVGTGEQ 1017


>gi|293553056|ref|ZP_06673698.1| Snf2 family protein [Enterococcus faecium E1039]
 gi|291602765|gb|EFF32975.1| Snf2 family protein [Enterococcus faecium E1039]
          Length = 1064

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|262195025|ref|YP_003266234.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
 gi|262078372|gb|ACY14341.1| SNF2-related protein [Haliangium ochraceum DSM 14365]
          Length = 985

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 21/211 (9%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   +    R++   L         +    ++  Q A         +       E +  
Sbjct: 767 AYDAVRAATQRDVLERLAHGGG-VMEALEALLRLRQAACHPALLPGREADTSAKMEMLVD 825

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWNEGKIP 110
              ++  A     +V   +   L  ++               +       +  + +   P
Sbjct: 826 ALSVV-AAEGGKALVFSQWTGLLDLIEPHLRAAEISFNRLDGSTRDRGGVVAAFQDESGP 884

Query: 111 -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++     + G GLNL    + +     WW+       +E     R  + G  R V VY 
Sbjct: 885 TVMLISLKAGGTGLNLTA-ADHVFLCDPWWNPA-----VEEQAADRAHRIGQDRPVMVYR 938

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           L++++T++E +L     K  + +  +    +
Sbjct: 939 LVSKDTVEERILALQEQKRALAEAAIGEGAR 969


>gi|257888157|ref|ZP_05667810.1| Snf2 family protein [Enterococcus faecium 1,141,733]
 gi|257824211|gb|EEV51143.1| Snf2 family protein [Enterococcus faecium 1,141,733]
          Length = 1067

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 897

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1051


>gi|257896952|ref|ZP_05676605.1| Snf2 family protein [Enterococcus faecium Com12]
 gi|257833517|gb|EEV59938.1| Snf2 family protein [Enterococcus faecium Com12]
          Length = 1067

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 897

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1051


>gi|89894130|ref|YP_517617.1| hypothetical protein DSY1384 [Desulfitobacterium hafniense Y51]
 gi|89333578|dbj|BAE83173.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 967

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 2   KQY----HKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y     + + ++  +L   G         +   +  Q+ +    + +    +     K
Sbjct: 743 KIYLAYLQQTKSQIAQELATHGFAKSQIQILAALTRLRQICSHPGMFIDNYTGE---SGK 799

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
           +   + ++E +      ++V   F S L  + +                   +       
Sbjct: 800 MLLFQELLEDSLAGGHRVLVFSQFTSMLDIIGEYLHSENIDYFYLSGSTKALERSRMAAS 859

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +N G+  +      + G GLNL  G + ++ F  WW+       +E     R  + G + 
Sbjct: 860 FNNGEGQVFLISLKAGGTGLNLT-GADTVIHFDPWWNPA-----VEDQATDRAHRIGQQN 913

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +V V  L+ Q TI+E V      K  + D ++ 
Sbjct: 914 SVQVIKLLTQGTIEEKVNALQAKKKKLIDSVIQ 946


>gi|325696368|gb|EGD38259.1| Snf2 family protein [Streptococcus sanguinis SK160]
          Length = 1033

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|315656771|ref|ZP_07909658.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492726|gb|EFU82330.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 988

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 20/214 (9%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-- 61
           Y K+       +   N    N  +   +  QLA  A   D + H        +       
Sbjct: 767 YAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGL 826

Query: 62  ----IIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKI 109
                +        +V   F S LA L+               T       +  +  G++
Sbjct: 827 RDDSNLNPRQRHQALVFSQFTSFLAILRERLDQAGIDYAYLDGTSRDRDRQVARFQNGEV 886

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    + +     WW+        E   V R  + G KR V VY 
Sbjct: 887 DVFLISLKAGGFGLNLTQ-ADYVFLTDPWWNPAA-----EAQAVDRAHRLGQKRFVNVYR 940

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           L+A +TI++ VL+    K  +   +L+  +   +
Sbjct: 941 LVATDTIEQRVLELQEKKRDLIGAVLSGQENREV 974


>gi|304389525|ref|ZP_07371488.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327335|gb|EFL94570.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 988

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 20/214 (9%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-- 61
           Y K+       +   N    N  +   +  QLA  A   D + H        +       
Sbjct: 767 YAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGL 826

Query: 62  ----IIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKI 109
                +        +V   F S LA L+               T       +  +  G++
Sbjct: 827 RDDSNLNPRQRHQALVFSQFTSFLAILRERLDQAGIDYAYLDGTSRDRDRQVARFQNGEV 886

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    + +     WW+        E   V R  + G KR V VY 
Sbjct: 887 DVFLISLKAGGFGLNLTQ-ADYVFLTDPWWNPAA-----EAQAVDRAHRLGQKRFVNVYR 940

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           L+A +TI++ VL+    K  +   +L+  +   +
Sbjct: 941 LVATDTIEQRVLELQEKKRDLIGAVLSGQENREV 974


>gi|302671400|ref|YP_003831360.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
 gi|302395873|gb|ADL34778.1| helicase SNF2 family [Butyrivibrio proteoclasticus B316]
          Length = 1034

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 26/212 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y    + +   +  +N E          S+  +  QL        +          K 
Sbjct: 813  ELYKAHLQRIKLMVDSKNEEDFRRDRIMILSELTRLRQLCCDPGLIYDNYT---GGSAKA 869

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
                 +I     +   +++   F S L R                     +     +  +
Sbjct: 870  DLCLEMIRSAAESGHKVLLFSQFTSMLERLTAILKKEGIKHYLLTGSTQKEDRIRMVDAF 929

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             E   P+      + G GLNL    +I++ +  WW++      +E     R  + G K  
Sbjct: 930  QEDDTPVFCISLKAGGTGLNLTA-ADIVIHYDHWWNIA-----VENQATDRAHRIGQKNV 983

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY LI QNTI+E ++     K  + D LLN
Sbjct: 984  VTVYRLIMQNTIEERIILLQNKKKELADQLLN 1015


>gi|298346771|ref|YP_003719458.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236832|gb|ADI67964.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 988

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 20/214 (9%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-- 61
           Y K+       +   N    N  +   +  QLA  A   D + H        +       
Sbjct: 767 YAKYLTAARAQVADANSPRINILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGL 826

Query: 62  ----IIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKI 109
                +        +V   F S LA L+               T       +  +  G++
Sbjct: 827 RDDSNLNPRQRHQALVFSQFTSFLAILRERLDQAGIDYAYLDGTSRDRDRQVARFQNGEV 886

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    + +     WW+        E   V R  + G KR V VY 
Sbjct: 887 DVFLISLKAGGFGLNLTQ-ADYVFLTDPWWNPAA-----EAQAVDRAHRLGQKRFVNVYR 940

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           L+A +TI++ VL+    K  +   +L+  +   +
Sbjct: 941 LVATDTIEQRVLELQEKKRDLIGAVLSGQENREV 974


>gi|270208570|ref|YP_003329341.1| putative helicase [Sinorhizobium meliloti]
 gi|76880844|gb|ABA56014.1| putative helicase [Sinorhizobium meliloti]
          Length = 1126

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 26/214 (12%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVY----YDEEKHWKEVH 52
             Y          +   +  + +   +       +K  Q             ++    +  
Sbjct: 900  IYESIRLAMHTRVQAAIAEKGLARSHIVILDALLKLRQACCDPRLLKLTDTKKPSSVQAE 959

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQ 102
              K+  L  ++ +       +IV   F S L  +++                      ++
Sbjct: 960  SAKLDRLMELVGELADEGRKVIVFSQFTSMLDLIRRRLDDADIAYALLTGDTVDRGTQVE 1019

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  G +P+      + G GLNL    + ++ +  WW+       +E   + R  + G  
Sbjct: 1020 SFQHGTMPVFLISLKAGGVGLNLTA-ADTVILYDPWWNPA-----VEEQAIDRAHRIGQD 1073

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + VFVY L+A +TI+E +      K  +   L +
Sbjct: 1074 KPVFVYRLVAADTIEEKMDVLKDKKRALAASLFD 1107


>gi|56808747|ref|ZP_00366465.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            pyogenes M49 591]
 gi|209558846|ref|YP_002285318.1| Putative SNF helicase [Streptococcus pyogenes NZ131]
 gi|209540047|gb|ACI60623.1| Putative SNF helicase [Streptococcus pyogenes NZ131]
          Length = 1032

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGESGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|301336251|ref|ZP_07224453.1| SNF2 family helicase [Chlamydia muridarum MopnTet14]
          Length = 1163

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPNLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1128 LSLQNRKKGLVKKVINS 1144


>gi|19745454|ref|NP_606590.1| putative SNF helicase [Streptococcus pyogenes MGAS8232]
 gi|19747568|gb|AAL97089.1| putative SNF helicase [Streptococcus pyogenes MGAS8232]
          Length = 1031

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    +       +    K+ +L +
Sbjct: 816  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMNY----QGKSGKLDSLRI 868

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 869  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 929  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 983  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1014


>gi|21909786|ref|NP_664054.1| putative SNF helicase [Streptococcus pyogenes MGAS315]
 gi|28896521|ref|NP_802871.1| SNF helicase [Streptococcus pyogenes SSI-1]
 gi|21903971|gb|AAM78857.1| putative SNF helicase [Streptococcus pyogenes MGAS315]
 gi|28811775|dbj|BAC64704.1| putative SNF helicase [Streptococcus pyogenes SSI-1]
          Length = 1032

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGESGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|306827970|ref|ZP_07461237.1| Snf2 family protein [Streptococcus pyogenes ATCC 10782]
 gi|304429889|gb|EFM32931.1| Snf2 family protein [Streptococcus pyogenes ATCC 10782]
          Length = 1032

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGESGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|50913662|ref|YP_059634.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10394]
 gi|50902736|gb|AAT86451.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10394]
          Length = 1032

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGESGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|325978978|ref|YP_004288694.1| SNF2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            ATCC BAA-2069]
 gi|325178906|emb|CBZ48950.1| SNF2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            ATCC BAA-2069]
          Length = 1029

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 815  RQMQ-ETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDY----NGESGKLDSLRTL 869

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F   L   +K   +              +      + +N G   
Sbjct: 870  LTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 930  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKENVEVYRL 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 984  ITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|293571575|ref|ZP_06682597.1| Snf2 family protein [Enterococcus faecium E980]
 gi|291608381|gb|EFF37681.1| Snf2 family protein [Enterococcus faecium E980]
          Length = 1064

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 838  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 894

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 895  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 954

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 955  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1008

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1009 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1048


>gi|195978760|ref|YP_002124004.1| SWF/SNF family helicase [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195975465|gb|ACG62991.1| SWF/SNF family helicase [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 1034

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  L      +         S   +  Q+ +    + +     +    K+  L  ++
Sbjct: 819  RQMQERLSAATDDDINRSKLEILSGITRLRQICDTPSLFMDY----QGGSGKLDNLRTLL 874

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
               K N    ++   F   LA +++   Q              +      + +N G    
Sbjct: 875  LQIKENGHRALLFSQFKGMLALVKQEIDQLGLSSYTITGSTPANDRQEMTRAFNNGSKDA 934

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G +  V VY LI
Sbjct: 935  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYRLI 988

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 989  TRGTIEEKMLELQENKRHLITTVLDG 1014


>gi|320547398|ref|ZP_08041686.1| Snf2 family protein [Streptococcus equinus ATCC 9812]
 gi|320447943|gb|EFW88698.1| Snf2 family protein [Streptococcus equinus ATCC 9812]
          Length = 1030

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +     +    KI +L  +
Sbjct: 815  RQMQ-ETITSASDADINRRKIEILSGITRLRQICDTPALFMDY----DGESGKIDSLRDL 869

Query: 63   IEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F            DL             D      + +N G   
Sbjct: 870  LTQIKENGHRALIFSQFRGMLDIAEKEIEDLGLTSYKITGSTPADARQEMTRAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 930  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKENVEVYRL 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 984  ITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|288906011|ref|YP_003431233.1| SWF/SNF family helicase [Streptococcus gallolyticus UCN34]
 gi|288732737|emb|CBI14311.1| putative SWF/SNF family helicase [Streptococcus gallolyticus UCN34]
          Length = 1029

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 815  RQMQ-ETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDY----NGESGKLDSLRTL 869

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F   L   +K   +              +      + +N G   
Sbjct: 870  LTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 930  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKENVEVYRL 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 984  ITRGTIEEKILEMQESKKNLVTTVLDG 1010


>gi|325277313|ref|ZP_08142939.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
 gi|324097548|gb|EGB95768.1| non-specific serine/threonine protein kinase [Pseudomonas sp. TJI-51]
          Length = 1105

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 78/208 (37%), Gaps = 19/208 (9%)

Query: 6    KFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKALEVI 62
               +++  ++   G            +K  Q+          +    +    K+ AL  +
Sbjct: 881  AMDKKVRDEIARNGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLQM 940

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLL 112
            +++  +    +++   F S LA +++   + +                +Q++ +G   + 
Sbjct: 941  LDELLSEGRRVLLFSQFTSMLALIEQELQKRQIRYSLLTGDTRDRRTPVQQFQQGDSEVF 1000

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI 
Sbjct: 1001 LISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLIT 1054

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + T++E +    + K+ +   LL+  + 
Sbjct: 1055 RGTVEEKIQALQQEKAALAASLLDGGQA 1082


>gi|139474374|ref|YP_001129090.1| putative helicase [Streptococcus pyogenes str. Manfredo]
 gi|134272621|emb|CAM30888.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 1032

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGESGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|325690932|gb|EGD32932.1| Snf2 family protein [Streptococcus sanguinis SK115]
          Length = 1033

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|251781815|ref|YP_002996117.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390444|dbj|BAH80903.1| SWF/SNF family helicase [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1032

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+    IE     S   +  Q+ +    + +     +    K+++L  
Sbjct: 818  QMQDQIRTASDADINRRKIE---ILSGITRLRQICDTPSLFMDY----DGESGKLESLRT 870

Query: 62   II--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++   K N    ++   F   L   +                   ++     + +N G  
Sbjct: 871  LLLQIKENGHRALIFSQFRGMLDLAKQEMDALGLTAYQMTGSTPANERQEMTRAFNNGSK 930

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL  G + +V   LWW+            ++R  + G +  V VY 
Sbjct: 931  DAFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRIGQEDNVEVYR 984

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 985  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1016


>gi|323350997|ref|ZP_08086654.1| Snf2 family protein [Streptococcus sanguinis VMC66]
 gi|322122721|gb|EFX94430.1| Snf2 family protein [Streptococcus sanguinis VMC66]
          Length = 1033

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|170720849|ref|YP_001748537.1| non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
 gi|169758852|gb|ACA72168.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            W619]
          Length = 1108

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 19/208 (9%)

Query: 6    KFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEVI 62
               +++  ++   G            +K  Q+          +    +    K+ AL  +
Sbjct: 884  AMDKKVREEIARNGAARSQIVILDALLKLRQVCCDLRLVKGVEIKGNQADKGKLGALLDM 943

Query: 63   IEK--ANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +E+  +    +++   F S L         R  +              +Q++ +G   + 
Sbjct: 944  LEELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGDSEVF 1003

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI 
Sbjct: 1004 LISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLIT 1057

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + T++E + Q  + K+ +   LL+  + 
Sbjct: 1058 RGTVEEKIQQLQQEKAALAASLLDGAEA 1085


>gi|94989794|ref|YP_597894.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10270]
 gi|94543302|gb|ABF33350.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10270]
          Length = 1032

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    +       +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMNY----QGKSGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|330982693|gb|EGH80796.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 280

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 52  AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 111

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 112 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 171

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY +I
Sbjct: 172 FLISLKAGGTGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMI 225

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           A+ T++E + +  R KS +   +L+ 
Sbjct: 226 ARGTVEEKIQRLQREKSALASGVLDG 251


>gi|327474515|gb|EGF19920.1| Snf2 family protein [Streptococcus sanguinis SK408]
          Length = 1033

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIENELDKLGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|324991286|gb|EGC23219.1| Snf2 family protein [Streptococcus sanguinis SK353]
          Length = 1033

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+   +     K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDYDGE---SGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|255282163|ref|ZP_05346718.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
 gi|255267111|gb|EET60316.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
          Length = 454

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 88/214 (41%), Gaps = 21/214 (9%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y++ +R+ + +L+ G  I A    +K ++  Q   G +  DE    + V   KI ALE
Sbjct: 245 QLYNQIKRDSFAELEDGGQITAPTVLTKLLRLQQFTGGFIQADEGIKPEFVFKGKINALE 304

Query: 61  VIIEKA---NAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNE 106
            I++         +++   F  ++            R    +   +  D+ P        
Sbjct: 305 DILDDYVISAGKKLVIFCRFRPEIDLISDSLKKKKIRFASIYGDIKIEDRGPIVEDFQKN 364

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +  A   + G G+ L    +  V++S  ++   + Q + RI      + G K    
Sbjct: 365 PETKVFLAQIDTAGLGITLTA-ADTCVYYSENFNYAAYSQSLARI-----HRIGQKNRCT 418

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +L+ +++IDE +L+ L  K  +   +++  ++
Sbjct: 419 YIHLVVEHSIDETILKALARKEDLAKTVVDDWRQ 452


>gi|306832030|ref|ZP_07465185.1| Snf2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
 gi|304425956|gb|EFM29073.1| Snf2 family protein [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
          Length = 1026

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 812  RQMQ-ETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDY----NGESGKLDSLRTL 866

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F   L   +K   +              +      + +N G   
Sbjct: 867  LTQIKENGHRALIFSQFRGMLDIAEKEMEKLGLTSYKITGSTPANARQEMTRAFNNGSKD 926

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 927  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKENVEVYRL 980

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 981  ITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|288958707|ref|YP_003449048.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
 gi|288911015|dbj|BAI72504.1| hypothetical protein AZL_018660 [Azospirillum sp. B510]
          Length = 1160

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 18/205 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKALEVI 62
               +  L    +G            +K  Q+                     K+ AL  +
Sbjct: 940  ETVRAALAASGRGLGQNTIAVIDALLKLRQVCCDPRLLKSIAALGGKARPSAKLHALTGM 999

Query: 63   IEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLL 112
            +++       I++   F + L  ++    +                  +  +   ++P+ 
Sbjct: 1000 VKEMVPEGRRILIFSQFTTMLDLIKLELEKAAIPYVELTGRTLDRALPVNRFQNREVPVF 1059

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFVY LIA
Sbjct: 1060 LISLKAGGRGLNLTA-ADTVIHYDPWWNPAA-----EDQATDRAYRIGQDKPVFVYKLIA 1113

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
             NT++E +L   R K ++    +  
Sbjct: 1114 ANTVEERILDLQRRKGSLSAATIEG 1138


>gi|257899587|ref|ZP_05679240.1| Snf2 family protein [Enterococcus faecium Com15]
 gi|257837499|gb|EEV62573.1| Snf2 family protein [Enterococcus faecium Com15]
          Length = 1067

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + R++  ++   + EAF        +   +  Q+      + E+    +    K++
Sbjct: 841  VYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQICCDPRLFIEDY---QGGSGKLE 897

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++ ++   K N   +++   F   L  LQ                         +  +N
Sbjct: 898  QVKDLLVAAKENKRRVLLFSQFTGMLTILQEELAELGISTFYLRGSTKPQDRLSMVDAFN 957

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ + LWW+       IE     R  + G K  V
Sbjct: 958  AGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----IEEQAAGRAHRIGQKNVV 1011

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             V+ +I++ TI+E +    + K  +   ++   +++   +
Sbjct: 1012 EVWRMISEGTIEERMDSLQQEKRELFQKVIQGNEEQLTKL 1051


>gi|87123478|ref|ZP_01079329.1| SNF2 related domain:DEAD/DEAH box helicase [Synechococcus sp. RS9917]
 gi|86169198|gb|EAQ70454.1| SNF2 related domain:DEAD/DEAH box helicase [Synechococcus sp. RS9917]
          Length = 1065

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
             Y K   +    +        +        K  Q+ N      +E            K++
Sbjct: 830  LYAKTVEDTLDAIARAPRGQRHGQVLGLLTKLKQICNHPALALKEEAAGDEFLQRSMKLQ 889

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             LE I+E+        ++   F      LQ    +             +  +    +  +
Sbjct: 890  RLEEILEEVIDAGDRALLFTQFAEWGHLLQGYLQRRWRSEVPFLNGSTSKSERQAMVDRF 949

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 950  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1003

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1004 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIIGSGE 1040


>gi|125718601|ref|YP_001035734.1| Snf2 family protein, putative [Streptococcus sanguinis SK36]
 gi|125498518|gb|ABN45184.1| Snf2 family protein, putative [Streptococcus sanguinis SK36]
          Length = 1033

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMSMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|324993643|gb|EGC25562.1| Snf2 family protein [Streptococcus sanguinis SK405]
 gi|324995045|gb|EGC26958.1| Snf2 family protein [Streptococcus sanguinis SK678]
 gi|327462912|gb|EGF09233.1| Snf2 family protein [Streptococcus sanguinis SK1]
          Length = 1033

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|308178567|ref|YP_003917973.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307746030|emb|CBT77002.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1071

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 26/212 (12%)

Query: 2    KQYHK----FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +     ++E+   +   +   F          QLA       E          K++
Sbjct: 850  KAYDRRFQRVRQEVLGLVDDVDSNRFKILQSLTLLRQLALDPSLVGEGDA----PSAKLE 905

Query: 58   ALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
             L  ++    +    I+V   F            +L           +  K    I  ++
Sbjct: 906  MLRELMADAVSEGHKILVFSQFTGFLQKARQVAEELGIDHGYLDGATSGVKRKELIDGFS 965

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + P+ F    S G G+NL    +  +    WW+ +      E   + R  + G  R V
Sbjct: 966  AEQFPVFFISLKSGGFGINLTS-ADYCILLDPWWNPQA-----EAQAIDRAHRIGQTRPV 1019

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +VY L+A++TI+  VL     K+ + + +L  
Sbjct: 1020 YVYRLVAKDTIESKVLALQAKKTQLFNDVLGE 1051


>gi|15605441|ref|NP_220227.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|255311538|ref|ZP_05354108.1| SWF/SNF family helicase [Chlamydia trachomatis 6276]
 gi|255317839|ref|ZP_05359085.1| SWF/SNF family helicase [Chlamydia trachomatis 6276s]
 gi|255349101|ref|ZP_05381108.1| SWF/SNF family helicase [Chlamydia trachomatis 70]
 gi|255503638|ref|ZP_05382028.1| SWF/SNF family helicase [Chlamydia trachomatis 70s]
 gi|255507317|ref|ZP_05382956.1| SWF/SNF family helicase [Chlamydia trachomatis D(s)2923]
 gi|3329163|gb|AAC68303.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|289525752|emb|CBJ15233.1| putative helicase [Chlamydia trachomatis Sweden2]
 gi|296435325|gb|ADH17503.1| SWF/SNF family helicase [Chlamydia trachomatis E/150]
 gi|296436253|gb|ADH18427.1| SWF/SNF family helicase [Chlamydia trachomatis G/9768]
 gi|296437182|gb|ADH19352.1| SWF/SNF family helicase [Chlamydia trachomatis G/11222]
 gi|296438113|gb|ADH20274.1| SWF/SNF family helicase [Chlamydia trachomatis G/11074]
 gi|296439042|gb|ADH21195.1| SWF/SNF family helicase [Chlamydia trachomatis E/11023]
 gi|297140614|gb|ADH97372.1| SWF/SNF family helicase [Chlamydia trachomatis G/9301]
 gi|297748839|gb|ADI51385.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]
 gi|297749719|gb|ADI52397.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]
          Length = 1163

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1128 LSLQNRKKGLVKKVINS 1144


>gi|166154925|ref|YP_001653180.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930913|emb|CAP06475.1| putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 1163

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1128 LSLQNRKKGLVKKVINS 1144


>gi|166154050|ref|YP_001654168.1| putative helicase [Chlamydia trachomatis 434/Bu]
 gi|301335252|ref|ZP_07223496.1| putative helicase [Chlamydia trachomatis L2tet1]
 gi|165930038|emb|CAP03521.1| putative helicase [Chlamydia trachomatis 434/Bu]
          Length = 1163

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIRQDLEAKGIPFVYLDGSTKNRLEIVQQFNEDPGLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1128 LSLQNRKKGLVKKVINS 1144


>gi|311032005|ref|ZP_07710095.1| SNF2 family helicase [Bacillus sp. m3-13]
          Length = 937

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y +  +E    ++  G             +  Q+ +    Y  +E      +   K++ 
Sbjct: 713 IYEQLVKETLDKVEELGGIQRRGLVLKMLGQLKQVCDHPALYLKEETPENLLMRSSKMEK 772

Query: 59  LEVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  ++E+        ++   + S            L    +              IQE+ 
Sbjct: 773 LVELVEQIRLRGESCLIFTQYISMGNMIIEALESTLGEKGRFLNGSVVKKNRDQLIQEFQ 832

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G+  +L     + G GLNL    N ++ +  WW+       +E     R  + G  R V
Sbjct: 833 DGEFHVLVLSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQSRFV 886

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  IA  T++E +   + +K  + + ++ +
Sbjct: 887 HVHKFIATGTLEEKIDAMIESKQALNNQIITS 918


>gi|73540253|ref|YP_294773.1| SNF2-related:helicase, C-terminal [Ralstonia eutropha JMP134]
 gi|72117666|gb|AAZ59929.1| SNF2-related:Helicase, C-terminal [Ralstonia eutropha JMP134]
          Length = 988

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS 79
             +  ++ ++  + A  A     E         K++    +  +  AN   ++V   F  
Sbjct: 786 RIHVLAQLMRLRRAACDARLVTPEVGQAG---AKVRTFVDLAGELAANGHKVLVFSQFVD 842

Query: 80  DLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            L  L++                   +    +  +  G+  +      + G GLNL    
Sbjct: 843 FLQLLRQGIEQAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNLTA-A 901

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++    WW+        E   + R  + G +R V VY LI   TI+E +++  + K  
Sbjct: 902 DYVIIADPWWNPAA-----EDQAMGRAHRIGQQRPVTVYRLITAGTIEERIVELHKDKRA 956

Query: 190 IQDLLLNA 197
           + D LL+A
Sbjct: 957 LADGLLDA 964


>gi|322386968|ref|ZP_08060592.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321269250|gb|EFX52186.1| Snf2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 1037

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + ++   +     K+++L  ++
Sbjct: 816  KQMQERILHATEEEINRSKIEILSGLMRLRQICDTPKLFMDDYDGE---SGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  +++   Q               +     + +N+G+   
Sbjct: 873  EQIQDGEHRVLIFSQFRGMLDIIEQELNQMGMESFKITGSTPAKERQEMTKAFNQGERSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G N ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GANTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVKVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   TK  +   +L+  +  
Sbjct: 987  TRGTIEEKIQELQDTKRNLVSTILDGAESR 1016


>gi|124004680|ref|ZP_01689524.1| Snf2 family helicase [Microscilla marina ATCC 23134]
 gi|123989803|gb|EAY29332.1| Snf2 family helicase [Microscilla marina ATCC 23134]
          Length = 960

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK------TVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y K + +   ++  +   +  + ++        K  QLAN     D+         + 
Sbjct: 739 KAYEKVKSQYRNEILKQIESSGMAKTQFLLLQGLTKLRQLANHPRMIDQGYEESSGKMDD 798

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNE 106
           I      I   N   ++V   F   L          + + A+  G T ++     Q    
Sbjct: 799 ILYKLESII-GNGHKVLVFSQFVKHLQLLKNAFEERQWRFAYLDGSTKNRQQQVEQFQTN 857

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I L      + G GLNL      +     WW+       IE   V R  + G +  VF
Sbjct: 858 DEIQLFLISLKAGGVGLNLTA-AEYVFLLDPWWNPA-----IEAQAVDRAHRIGQENTVF 911

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y  I + T++E +L     K  +   L+
Sbjct: 912 TYKFITKGTVEEKILALQTNKRRLAQDLI 940


>gi|322373853|ref|ZP_08048388.1| Snf2 family protein [Streptococcus sp. C150]
 gi|321277225|gb|EFX54295.1| Snf2 family protein [Streptococcus sp. C150]
          Length = 1031

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          KI +L  ++
Sbjct: 815  QQMQQGLILASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKIDSLRDLL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEGLLEELGISSYKLTGSTPSDSRQEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G ++ V VY LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEQNVEVYRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E +L+    K  +   +L+  +  
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDGNESR 1014


>gi|258510998|ref|YP_003184432.1| SNF2-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477724|gb|ACV58043.1| SNF2-related protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 949

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 73/219 (33%), Gaps = 26/219 (11%)

Query: 3   QYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y      ++  +              +  ++  Q+ +                 K+++L
Sbjct: 714 MYQALVDRMFAQIARGPSAMARRGAILTTLLRLKQVCDHPALIS-GGRPSVKRSGKLRSL 772

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNE 106
             ++          ++   F      L                 G +       ++++  
Sbjct: 773 LDLLRVVVDGGEAALIFTQFREMGEMLCAAVEDELGFRPVFLHGGMSAKARGEIVEQYQA 832

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           G+   P+L     + G GLNL    N +  +  WW+       +E     R  + G  R 
Sbjct: 833 GRMASPVLILSLRAGGVGLNLTR-ANHVFHYDRWWNPA-----VEDQATDRAYRIGQLRG 886

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V V+ +I   T++E + + LR K  + D +++ + ++ +
Sbjct: 887 VEVHKMICVGTLEERIDEMLRAKRALSD-VVSRVSEDWV 924


>gi|94993679|ref|YP_601777.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10750]
 gi|94547187|gb|ABF37233.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS10750]
          Length = 1032

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+  + IE     S   +  Q+ +    +       +    K+ +L +
Sbjct: 817  QMQDQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMNY----QGKSGKLDSLRI 869

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L   +                   ++     + +N G  
Sbjct: 870  LLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGSK 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NL  G + ++   LWW+            ++R  + G K  V VY 
Sbjct: 930  DAFLISLKAGGVGINLT-GADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVYR 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  LITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|319942577|ref|ZP_08016886.1| hypothetical protein HMPREF9464_02105 [Sutterella wadsworthensis
            3_1_45B]
 gi|319803873|gb|EFW00795.1| hypothetical protein HMPREF9464_02105 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1352

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAFN------------SASKTVKCLQLANGAVYYDEEKHWKE 50
             Y +    +   +        N                     Q+ N    + +      
Sbjct: 1119 LYQETLDRMLKQIMEVEKSPENNTPAGRMARRGRVLKLITSLKQICNSPSQFLKTPSLTP 1178

Query: 51   VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKD 97
                K  AL  I+ +   +   +++   +     RLQ                G + ++ 
Sbjct: 1179 -DSGKGDALLEILSQCADSDRKVLIFTQYREMGERLQDWIAQALGERPDFLHGGVSAEER 1237

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +  +           + G GLNL    + ++ + LWW+       +E     R 
Sbjct: 1238 MKMVDRFQEDRTARSFILSLKAGGTGLNLTA-ASAVIHYDLWWNPA-----VEAQATDRA 1291

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G +R V VY  I   + +E +   L  K  + D+ + A +
Sbjct: 1292 FRIGQRRDVLVYRFITAGSFEERINDMLMQKRDLADMTVAAGE 1334


>gi|15834706|ref|NP_296465.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|8163131|gb|AAF73530.1| helicase, Snf2 family [Chlamydia muridarum Nigg]
          Length = 1181

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 973  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLGSLVDSGH 1031

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1032 KTVVFSQYTKMLGIIKQDLEAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGG 1091

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1092 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1145

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1146 LSLQNRKKGLVKKVINS 1162


>gi|94987919|ref|YP_596020.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS9429]
 gi|94991803|ref|YP_599902.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS2096]
 gi|94541427|gb|ABF31476.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS9429]
 gi|94545311|gb|ABF35358.1| SWF/SNF family helicase [Streptococcus pyogenes MGAS2096]
          Length = 1032

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            MK   + +     D+  + IE     S   +  Q+ +    + +     +    K+ +L 
Sbjct: 818  MK--DQIRNSSDVDISRQKIE---ILSGITRLRQICDTPSLFMDY----QGKSGKLDSLR 868

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
            +++ +   N    ++   F   L   +                   ++     + +N G 
Sbjct: 869  ILLTQIKENGHRALIFSQFRGMLDLAKQEMTALGLTSYQMTGSTPANERQEMTRAFNNGS 928

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                     + G G+NL  G + ++   LWW+            ++R  + G K  V VY
Sbjct: 929  KDAFLISLKAGGVGINL-PGADTVILIDLWWNPAVEM-----QAISRAYRIGQKENVEVY 982

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             LI + TI+E +L+   +K  +   +L+  +  
Sbjct: 983  RLITRGTIEEKILELQESKRNLVTTVLDGNESR 1015


>gi|327462003|gb|EGF08332.1| Snf2 family protein [Streptococcus sanguinis SK1057]
          Length = 1033

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKLGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|91201478|emb|CAJ74538.1| similar to ATP-dependent RNA helicase (RNA polymerase associated
           protein) [Candidatus Kuenenia stuttgartiensis]
          Length = 886

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y    +EL   L+            +  +K  QL N    +     ++E    K   L 
Sbjct: 660 LYQNTVKELSKKLEATEGVQRRGLILASLMKFKQLCNHPDQFLGTGGYEEADSGKFMRLR 719

Query: 61  VII--EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNE- 106
            I          +++   F                R         ++      ++++   
Sbjct: 720 EICETIYEKREKVLIFTQFKEITGHLHAFLKTIFGREGLVMHGSVSVGMRKNIVEQFQNR 779

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             IP +     + G GLNL    N ++ F  WW+       +E     R  + G K+ V 
Sbjct: 780 EYIPYMVLSLKAGGVGLNLTE-ANHVIHFDRWWNPA-----VENQATDRAFRIGQKKNVI 833

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+  I + TI+E +   LR K+ +   ++    +  I
Sbjct: 834 VHKFITKGTIEEKINDMLREKTKLTTDVIQVTGESMI 870


>gi|290579916|ref|YP_003484308.1| putative SNF helicase [Streptococcus mutans NN2025]
 gi|254996815|dbj|BAH87416.1| putative SNF helicase [Streptococcus mutans NN2025]
          Length = 1030

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 25/211 (11%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q +         I        S   +  Q+ +    +            K+ +L  +
Sbjct: 815  RQMQ-DGIRHSSDSEINRQKIEILSGITRLRQICDTPKLFMNYDD----DSGKLASLREL 869

Query: 63   I--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K N    ++   F   L   +                   ++       +N G   
Sbjct: 870  LLQIKENGHRALIFSQFRDMLDLAEKEIEALGLTSYKMTGSTPANERQEMTHAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + +V   LWW+            ++R  + G K  V VY +
Sbjct: 930  TFLISLKAGGVGLNLT-GADTVVLIDLWWNPAIEM-----QAISRAHRIGQKENVEVYRM 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  ITRGTIEEKILELQESKKNLVTTVLDGNESR 1014


>gi|328946828|gb|EGG40965.1| Snf2 family protein [Streptococcus sanguinis SK1087]
          Length = 1033

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|227832859|ref|YP_002834566.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453875|gb|ACP32628.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1064

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 3    QYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y        +     +          +   +  Q+ N   ++  +     +       K
Sbjct: 831  LYKALVNDVEQALAKKKKGISRRGLILASLTRIKQICNHPAHFLADGSPVTIKGKHRSGK 890

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQ 102
            ++ L  II++   ++   ++   + +            L      F  G + ++    ++
Sbjct: 891  VEELMRIIDQAIESSERALIFTQYKAFGDVLQPYLSEQLGCEIPFFHGGVSKNRRDQMVE 950

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+      P++     + G GLNL    +I+V    WW+       +E     R  + G 
Sbjct: 951  EFQAEDGAPVMLLSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQ 1004

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 1005 QRNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 1043


>gi|327490072|gb|EGF21860.1| Snf2 family protein [Streptococcus sanguinis SK1058]
          Length = 1033

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +  ++L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSIILDGAEAK 1016


>gi|269216031|ref|ZP_06159885.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
 gi|269130290|gb|EEZ61368.1| domain protein, SNF2 family [Slackia exigua ATCC 700122]
          Length = 1078

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYC---DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + + +  R       +   +        ++  +  Q+A                  K +A
Sbjct: 858  QAHEQLLRTKIAHEGEEGDDGRSKVEILAELTRLRQIALDPSLLY---ADYRGGGAKEQA 914

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE 106
            +   I     +   ++V   F S L                        K    +  +N 
Sbjct: 915  IMDTIASCIASGEKVLVFSQFTSYLDIIGAKLSEQGVKHYVITGSTPKKKRLALVDAFNA 974

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               P+      + G GLNL  G ++++    WW+              R  + G  R V 
Sbjct: 975  DDTPVFLISLKAGGTGLNLT-GASVVLHADPWWNAAAQ-----NQATDRAHRMGQTRIVN 1028

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY +IA++TI+E +L+    KS + D ++ +
Sbjct: 1029 VYRVIAKDTIEERILKLQDAKSDLADRIVGS 1059


>gi|24380105|ref|NP_722060.1| putative SNF helicase [Streptococcus mutans UA159]
 gi|24378101|gb|AAN59366.1|AE015001_11 putative SNF helicase [Streptococcus mutans UA159]
          Length = 1030

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 25/211 (11%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q +         I        S   +  Q+ +    +            K+ +L  +
Sbjct: 815  RQMQ-DGIRHSSDSEINRQKIEILSGITRLRQICDTPKLFMNYDD----DSGKLASLREL 869

Query: 63   I--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K N    ++   F   L   +                   ++       +N G   
Sbjct: 870  LLQIKENGHRALIFSQFRDMLDLAEKEIEALGLTSYKMTGSTPANERQEMTHAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + +V   LWW+            ++R  + G K  V VY +
Sbjct: 930  TFLISLKAGGVGLNLT-GADTVVLIDLWWNPAIEM-----QAISRAHRIGQKENVEVYRM 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E +L+   +K  +   +L+  +  
Sbjct: 984  ITRGTIEEKILELQESKKNLVTTVLDGNESR 1014


>gi|327470402|gb|EGF15858.1| Snf2 family protein [Streptococcus sanguinis SK330]
          Length = 1033

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  ++
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELL 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIESELDKMGMESFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|270284872|ref|ZP_06194266.1| SNF2 family helicase [Chlamydia muridarum Nigg]
 gi|270288900|ref|ZP_06195202.1| SNF2 family helicase [Chlamydia muridarum Weiss]
          Length = 1163

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 955  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLGSLVDSGH 1013

Query: 70   PIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  +++          +  G T ++     Q   +  + +      + G
Sbjct: 1014 KTVVFSQYTKMLGIIKQDLEAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGG 1073

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1074 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1127

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K  +   ++N+
Sbjct: 1128 LSLQNRKKGLVKKVINS 1144


>gi|260905640|ref|ZP_05913962.1| DNA/RNA helicase, superfamily II, SNF2 family protein
           [Brevibacterium linens BL2]
          Length = 1012

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 23/209 (11%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K Y +    +R+          +               LA      D     + VH  K+
Sbjct: 781 KLYDRVLQKERKKILGFIDSEYDKQRFIVFRSLTLLRMLALDPRIVD--GEHEGVHSSKL 838

Query: 57  KALEVIIEKA--NAAPIIVAYHFN-------SDLARLQKAFPQGRTLDK-DPCTIQEWNE 106
            AL   +E         IV   F         DL R    +       +     + E+  
Sbjct: 839 AALMERLEDVVAEGHRSIVFSQFTSFLDKVAEDLDRRGVPYVVLDGSTRNRGQVVDEFRS 898

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P+      + G GLNL    + +     WW+        E   + R  + G  + V 
Sbjct: 899 GAAPVFLISLKAGGFGLNLTE-ADYVFLMDPWWNPAT-----ENQAIDRAHRIGQTKNVM 952

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY  +A+ TI+E VL   + K+ + D L+
Sbjct: 953 VYRYVAEGTIEEKVLALQKKKAELFDSLM 981


>gi|228476452|ref|ZP_04061142.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251873|gb|EEK10919.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 1031

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          K+ +L  ++
Sbjct: 815  QQMQQGLISASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRELL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEGLLQELGISSYKLTGSTPSDSRQEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G ++ V VY LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEQNVEVYRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E +L+    K  +   +L+  +  
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDGNESR 1014


>gi|226355788|ref|YP_002785528.1| DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti VCD115]
 gi|226317778|gb|ACO45774.1| putative DNA helicase, SNF2/RAD54 protein family [Deinococcus deserti
            VCD115]
          Length = 1132

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y       +  +  +L+   +     A     +K  Q          E       + K 
Sbjct: 889  LYETVRVTMESRVREELRARGLNRSTIAILDALLKLRQAVTDPRLVKLEAARNVQGNAKF 948

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNE 106
            + L+  + +       +++   F + L+ L++   +  T               I  +  
Sbjct: 949  EWLQGNLPQMLEEGRRVLIFSGFATLLSHLEQWLREEGTPYSMITGQTQDRQTQIDRFQN 1008

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    + ++ +  WW+        E     R  + G  + VF
Sbjct: 1009 GETHVFLITLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----EDQATDRAYRIGQDKPVF 1062

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            VY LIA  +++E +L     K+++   +L+    E   +
Sbjct: 1063 VYKLIAAGSVEERILDLQSRKASLARGILDGGLSEATQL 1101


>gi|238492801|ref|XP_002377637.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
           NRRL3357]
 gi|220696131|gb|EED52473.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
           NRRL3357]
          Length = 1076

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%)

Query: 6   KFQRELYCDLQGENIEAF------NSASKTVKCLQLANGA------VYYDEEKHWKEVHD 53
           K QR+ Y    G                      ++ N        +   +  +      
Sbjct: 573 KLQRQAYKSFLGSEEMQSILRGRRQVLYGVDILRKICNHPDLQSHKLTSHKAGYGNPDKS 632

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   K      ++       L               ++         +   
Sbjct: 633 GKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQSM 692

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N   + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 693 VDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 746

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 747 GQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 788


>gi|182414357|ref|YP_001819423.1| non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
 gi|177841571|gb|ACB75823.1| Non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
          Length = 922

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 25/211 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS-----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           +Y +   E    L  +   A         +   +  Q           K        KI 
Sbjct: 681 EYARICTEGLQRLGDDVGAAMREKSFGFLALLTRLRQTCCDPDMLPWLKSPLA-DSGKIA 739

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
            L   + +  ++   +++   F   L R++                G TLD+     Q  
Sbjct: 740 LLMEKLAEVVSSGHKVVIFSQFVMFLDRVRAALNERFPELPHFELTGMTLDRLKPVQQFQ 799

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N     ++     + G G+ L    + +     WW+       +E   V R  + G    
Sbjct: 800 NAPGAAVMLVSLKAAGTGITLHA-ADYVFLLDPWWNPA-----VEAQAVDRVHRIGQTNT 853

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VFVY ++   TI+E +      K  + + L+
Sbjct: 854 VFVYRMVTAGTIEERIQALKEEKRDLFEKLV 884


>gi|306829829|ref|ZP_07463016.1| Snf2 family protein [Streptococcus mitis ATCC 6249]
 gi|304427840|gb|EFM30933.1| Snf2 family protein [Streptococcus mitis ATCC 6249]
          Length = 1031

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  RE    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RERLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDYQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAQDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQKVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|262282141|ref|ZP_06059910.1| Snf2 family protein [Streptococcus sp. 2_1_36FAA]
 gi|262262595|gb|EEY81292.1| Snf2 family protein [Streptococcus sp. 2_1_36FAA]
          Length = 1032

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +      E N +     S  ++  Q+ +    + +E    +    K+ +L  ++
Sbjct: 815  QQMQERMRSATDEELNRDKIEILSGLMRLRQICDTPALFLDEY---QGDSGKLDSLRELL 871

Query: 64   EKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
            E+ +     +++   F   L  +++                           +N+G+   
Sbjct: 872  EQIHSSNHRVLIFSQFRGMLDLIEQELQSLEMESFKITGSTPAKDRQEMTTAFNDGQKDA 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLN+  G + ++   LWW+       +E   + R  + G +R V VY LI
Sbjct: 932  FLISLKAGGVGLNVT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQERNVEVYRLI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 986  TRGTIEEKIQELQESKKNLISTILDGTESR 1015


>gi|187735422|ref|YP_001877534.1| Non-specific serine/threonine protein kinase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425474|gb|ACD04753.1| Non-specific serine/threonine protein kinase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 895

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L+  L   +  A          +  Q+ N    +     +      K + L+
Sbjct: 668 LYQAQIDMLHAVLDEPDPAARLMLILPILARLKQICNHPAQFQGTDDYAPERSGKFRRLQ 727

Query: 61  VIIEKAN--AAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN-E 106
            +           I+   F S +            R       G  + +    +  +  E
Sbjct: 728 ELCASIAARQEKTILFTQFRSIIPHLHDLLSGVFGRSGLTLHGGTPIPERQNIVTAFQKE 787

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P       + G GL L    + ++    WW+       +E     R  + G  R V 
Sbjct: 788 SGPPFCILSLKAAGTGLTLTQ-ASHVIHVDRWWNPA-----VENQATDRAYRIGQHRNVL 841

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+ LI + TI++ +   L+ K  + D L +   ++ +
Sbjct: 842 VHRLICRGTIEDRIDAMLKDKRRMADDLFSGGPEQWL 878


>gi|322375571|ref|ZP_08050083.1| Snf2 family protein [Streptococcus sp. C300]
 gi|321279279|gb|EFX56320.1| Snf2 family protein [Streptococcus sp. C300]
          Length = 1031

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDYQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQKVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|229817614|ref|ZP_04447896.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
 gi|229785403|gb|EEP21517.1| hypothetical protein BIFANG_02882 [Bifidobacterium angulatum DSM
            20098]
          Length = 1229

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L        +       ++     ++        E+ +       K+
Sbjct: 1007 KLYAAHEQRLRASLNSVEDADFDTNRIRILAELTLLREICCAPKLVYEDANGA---SAKL 1063

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEW 104
             A++ ++         ++V   F S L  +   F                 K    + ++
Sbjct: 1064 DAIDDLVASCMDAGKKVLVFSQFTSFLDLIGDRFTAHGVPFYTITGETPKRKRVDLVNQF 1123

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G ++++    WW+              R  + G  + 
Sbjct: 1124 NMDDVPVFLISLKAGNTGLNLT-GASVVIHADPWWNAAAQS-----QATDRAHRIGQTQD 1177

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++AQ+TI+E +L+  + KS +     + 
Sbjct: 1178 VNVYQIVAQHTIEERILRLQKEKSALARQFTDG 1210


>gi|225164937|ref|ZP_03727151.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
 gi|224800459|gb|EEG18841.1| Non-specific serine/threonine protein kinase [Opitutaceae bacterium
           TAV2]
          Length = 940

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 24/217 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           +Y +   E    L  +   A         +   +  Q+          K  +     KI 
Sbjct: 703 EYARICAEGLQRLGDDVSAAIREKSFGLLALLTRLRQVCCDPDMLPWIKDARLADSGKIS 762

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
            L   + +   N   +++   F   L R++           +    G TLD+        
Sbjct: 763 LLIERLAEVIANGHKVVIFSQFVMLLNRVRDALAHSFPDLPRYELTGMTLDRLKPVQGFQ 822

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N      +     + G G+ L    + +     WW+       +E   V R  + G    
Sbjct: 823 NADGAAAMLVSLKAAGTGITLHS-ADYVFLLDPWWNPA-----VEAQAVDRVHRIGQTST 876

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VFVY ++   TI+E +     +K  + D L+  L  +
Sbjct: 877 VFVYRMVTAGTIEERIEALKASKRDLFDKLIGGLGGD 913


>gi|330504452|ref|YP_004381321.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
 gi|328918738|gb|AEB59569.1| non-specific serine/threonine protein kinase [Pseudomonas mendocina
           NK-01]
          Length = 876

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 19/205 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHW-KEVHDEKIKALEVI 62
              +++  ++  + +   +       ++  Q         E+          K+ AL  +
Sbjct: 657 AMDQKVRDEIARQGLARSHIVILEALLRLRQSCCDLRLLGEDGGQLTAADSGKLSALLDM 716

Query: 63  IEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +++       +++   F S LA        R         +       ++ +  G+ P+ 
Sbjct: 717 LQELVDEGRRVLLFSQFTSMLALIEAELQARKIAYAKLTGSTQDRRTPVERFQAGEFPVF 776

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + ++ F  WW+        E     R  + G  + VFVY LIA
Sbjct: 777 LISLKAGGSGLNLTA-ADTVIHFDPWWNPAA-----EAQASDRAYRIGQDKPVFVYKLIA 830

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           + +++E +    + K+++   +L+ 
Sbjct: 831 RGSVEEKIQLLQQAKASLARGVLDG 855


>gi|307708395|ref|ZP_07644861.1| Snf2 family protein [Streptococcus mitis NCTC 12261]
 gi|307615494|gb|EFN94701.1| Snf2 family protein [Streptococcus mitis NCTC 12261]
          Length = 804

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 5   HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            +  R+    +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 585 QQM-RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 640

Query: 63  IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           + +       +++   F   L                        +     + +N+G+  
Sbjct: 641 LLQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 700

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 701 AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQEETVEVYRL 754

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + + TI+E + +    K  +   +L+  +   
Sbjct: 755 VTRGTIEEKIQELQEQKKHLVSQVLDGTESRG 786


>gi|149919942|ref|ZP_01908417.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
 gi|149819215|gb|EDM78649.1| SNF2/helicase domain protein [Plesiocystis pacifica SIR-1]
          Length = 1056

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 27/217 (12%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            + Y   +   +E   +               ++  Q A             E        
Sbjct: 829  RTYDAVRAATQEQVVEQLSSGNNVLQVLEALLRLRQAACHRALLPGGSGRIEKDGGDPNA 888

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTI 101
               K++ L   + +        +V   + + L  ++               +       +
Sbjct: 889  PSSKLQLLLDTLVQVVDTGHKALVFSQWTTLLDLVEPALKDAGLDFCRLDGSTRDRGGVV 948

Query: 102  QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + + +    P++     + G GLNL    + +     WW+       +E     R  + G
Sbjct: 949  ERFQDPAGPPVMIISLKAGGTGLNLTA-ADNVFLLDPWWNPA-----VEDQAADRAHRIG 1002

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V V+ LIA  T++E +L     K  + +  +  
Sbjct: 1003 QDKPVIVHRLIASETVEERILALQDRKRKLAETAVGD 1039


>gi|312891015|ref|ZP_07750539.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311296482|gb|EFQ73627.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 945

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 4   YHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y + + ++   +      +G +           +  Q+ N  +    E  W     +   
Sbjct: 722 YDQVREQIRSSIFLEIEQEGFDKSKLTIIQGITRLRQVCNSPLLLQHEGFWCPDSVKTEV 781

Query: 58  ALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE- 106
            ++ ++       ++V   F            +L      F       +    +  + E 
Sbjct: 782 LVDELLNNLKGHKVLVFSQFTKMLDLLAKQLEELKLDFFHFDGQTPSKQRMEMVNSFQEE 841

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      +   GLNL    + ++ F  WW+    QQ I+R       + G  + V
Sbjct: 842 GNTTNIFLISLMAGNMGLNLTA-ADYVILFDPWWNTAVEQQAIDR-----THRIGQTKKV 895

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           F Y +I ++TI+E ++     K ++ D L+  
Sbjct: 896 FAYKMICRDTIEEKIINLQEKKKSLSDSLIGG 927


>gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbaspirillum seropedicae SmR1]
 gi|300076654|gb|ADJ66053.1| superfamily II helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 24/220 (10%)

Query: 2   KQYHKFQ----RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y   +    +++   L+  G            +K  Q+        + +  K +   K
Sbjct: 592 ELYESVRMAADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMPKGLERAK 651

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
           I  L   +    A    I+V   F   L                             I  
Sbjct: 652 IDWLCDTLPALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAG 711

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + + PL+     + G GLNL    + +V    WW+       +E   + R  + G +R
Sbjct: 712 FQQEQTPLMLVSLKAGGVGLNLTA-ADTVVLVDPWWNPA-----VEEQAIARAHRLGQQR 765

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            VFVY L+ + +I+E +L+    KS + + +L      T+
Sbjct: 766 QVFVYKLVIEGSIEERLLELQARKSALAEGMLGRDDATTV 805


>gi|78185742|ref|YP_378176.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78170036|gb|ABB27133.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 1063

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIK 57
             Y+K   +    +        +    +   +  Q+ N       E            K+ 
Sbjct: 833  LYNKTVEDTLDAIATAPRGQRHGQVLALLTRLKQICNHPALAQREGAVDSEFLGRSAKLM 892

Query: 58   ALEV-------------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
             LE              +  +      ++                 G         +  +
Sbjct: 893  RLEEILEEVIEAGDRALLFTQFAEWGHLLQAWMQQRWKSEVPFLHGGTRKSDRQAMVDRF 952

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 953  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHVDRWWNPA-----VENQATDRAYRIGQT 1006

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  + + +++E + Q +R K+ + + ++ + +
Sbjct: 1007 NRVMVHKFVTRGSVEEKIDQMIREKARMAEDVIGSGE 1043


>gi|241765480|ref|ZP_04763446.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
 gi|241364765|gb|EER59758.1| Non-specific serine/threonine protein kinase [Acidovorax
           delafieldii 2AN]
          Length = 940

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDE 54
           + Y   +           + QG            +K  Q+           K  + +   
Sbjct: 675 ELYEAVRTTADKQVRRALERQGFEGSQIAILDALLKLRQVCCDPRLVKGTTKTAQTMERA 734

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQ 102
           K++ L  ++         ++V   F   L                        +    ++
Sbjct: 735 KLELLAGLLPTLVDEGRRMLVFSQFTEMLMLVAEQLDTLALPYLTLTGQTPPRQRGAVVR 794

Query: 103 EWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++        P+L     + G GLNL    + +V    WW+       +E     R  + 
Sbjct: 795 QFQAQDETSAPILLVSLKAGGLGLNLTA-ADTVVHLDPWWNPA-----VEEQATARAHRI 848

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + VFVY L+ + +I+E +L+    K+ +   +L 
Sbjct: 849 GQDQPVFVYKLVVEGSIEERMLELQARKAALAQGVLG 885


>gi|291563034|emb|CBL41850.1| Superfamily II DNA/RNA helicases, SNF2 family [butyrate-producing
            bacterium SS3/4]
          Length = 1068

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 65/201 (32%), Gaps = 23/201 (11%)

Query: 9    RELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            +E   +    +   E     ++ ++  Q+        +          K+     ++   
Sbjct: 854  KEQLMEGTDGDYGKERMQILAELMRLRQICCEPSLCFDGYK---GGSAKLDTCMELLLNG 910

Query: 66   -ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
             +    I++   F S L                                + +  + +   
Sbjct: 911  TSAGHKILLFSQFTSMLEIIAKRLKKEKIPFYLLTGSTPKRDRVQMASSFQKDDVMVFLI 970

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    ++++ +  WW++             R  + G +  V V+ LI ++
Sbjct: 971  SLKAGGTGLNLTA-ADVVIHYDPWWNVAAQ-----NQATDRAHRIGQENQVSVFKLITKH 1024

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            TI+E +L+    K  + D ++
Sbjct: 1025 TIEENILKLQEMKRDLADTVV 1045


>gi|307706009|ref|ZP_07642832.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK564]
 gi|307620428|gb|EFN99541.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK564]
          Length = 1032

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 73/212 (34%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQM-RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKVEQELPDLGMTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   ++R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|270292306|ref|ZP_06198517.1| Snf2 family protein [Streptococcus sp. M143]
 gi|270278285|gb|EFA24131.1| Snf2 family protein [Streptococcus sp. M143]
          Length = 1031

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  RE    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RERLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDYQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQMVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|331266037|ref|YP_004325667.1| Snf2 family protein, superfamily II DNA/RNA helicases [Streptococcus
            oralis Uo5]
 gi|326682709|emb|CBZ00326.1| Snf2 family protein, superfamily II DNA/RNA helicases [Streptococcus
            oralis Uo5]
          Length = 1031

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDYQGA---SGKLDSLRDL 867

Query: 63   IEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVAAGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQKVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|322382215|ref|ZP_08056128.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153796|gb|EFX46164.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 951

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 29/217 (13%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKA 58
            Y  +  ++   L   G         +   K  Q+ N      +       E    K+  
Sbjct: 717 LYENYIHDMLDRLNQAGGMGRRGIILAALTKLKQICNHPALVLKERPGGPWEQRSGKLDR 776

Query: 59  LEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
           L  ++ +        ++   F             +L         G +       I  + 
Sbjct: 777 LVEMVHELRDEGDKCLIFTQFVDTGFLLQHVLEQELGHPVLFLHGGSSKADRDKMIARFQ 836

Query: 106 EGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +P      +      + G GLNL    N +  F  WW+       +E     R  + 
Sbjct: 837 DLTLPEDEQRYVFLLSLKAGGTGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAYRI 890

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  R V V+  I   T++E + + +  K  +   ++ 
Sbjct: 891 GQTRNVQVHKFITLGTLEERIDEMIEQKLGLSQQIVG 927


>gi|313898327|ref|ZP_07831864.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312956709|gb|EFR38340.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 377

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 22/217 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K   ++   ++                K  Q+ N    Y  E+ ++     K++ L+
Sbjct: 150 LYRKLIADMEEKIKESEGMERRGLVLSTITKLKQICNHPDQYLGEESYRIKDSGKLEMLK 209

Query: 61  VII--EKANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQ-EWNE 106
            I          ++V   +   +            +       G  + K    +     E
Sbjct: 210 EICETIYEKRERVLVFTQYKEIIPYLHATLAKIFHQEGYILHGGTPVKKRSEIVAAFQQE 269

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +P +     + G GLNL    N ++ F  WW+       +E     R  + G K+ V 
Sbjct: 270 AYVPYIVLSLKAAGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAFRIGQKKNVI 323

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+ LI++ T++E + + +++K  +   ++   K+  I
Sbjct: 324 VHKLISKGTVEEKIDELIKSKVELSQQVIGDGKETWI 360


>gi|77361926|ref|YP_341500.1| DNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876837|emb|CAI89054.1| putative DNA helicase with SNF2 domain [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1048

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 22/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---KTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--E 60
            +   E   DL  E     +  +     +K  Q+       +           K++ L   
Sbjct: 834  QALEEKLTDLFSEQGMQKSKLAFLEALLKLRQICCHPKLIEPTTQA---GSAKLEWLSNR 890

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLL 112
            + +  +    +I+   F S L  + +   +             +    I E+  G   + 
Sbjct: 891  LPLMLSLGRKVIIFSQFTSALDLIAERLKEININFSLLTGQTRQRDKVIDEFTSGATSVF 950

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ +  WW+       +E+    R  + G    VFVY LI 
Sbjct: 951  LISLKAGGTGLNLTQ-ADTVIHYDPWWNPA-----VEKQATDRAYRIGQTNPVFVYKLIM 1004

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
             N+I+E V +  + K  + D L 
Sbjct: 1005 ANSIEEKVFKMQQDKQALVDALF 1027


>gi|320526909|ref|ZP_08028099.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320132877|gb|EFW25417.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 1079

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 26/212 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + L   LQ +             ++  +  QL        +       +  K +
Sbjct: 860  LYKARVQRLKLMLQKQSDEEFKENKIAVLAELTRLRQLCCDPHLIYDHYK---GNSAKKE 916

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
                I+E        I++   F S L                        +    ++ + 
Sbjct: 917  LCLDIVENAIEEGHKILLFSQFTSMLDTLTQEFDKKGIRYHKLVGSTPQFERARMVESFQ 976

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               +P+      + G GLNL    +I++ +  WW+       +E     R  + G    V
Sbjct: 977  TDDVPIFCISLKAGGTGLNLTA-ADIVIHYDPWWNTA-----VENQASDRAHRIGQTNVV 1030

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+ LI ++TI+E ++Q  + KS + D +L+ 
Sbjct: 1031 NVFRLIIKDTIEERIIQLQKEKSNLADRILSG 1062


>gi|281415208|ref|ZP_06246950.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Micrococcus
           luteus NCTC 2665]
          Length = 630

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 2   KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           K Y +     +R++   L   +   F           LA      D+   +  V   K++
Sbjct: 403 KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTLLRMLALAPQIVDD--QYASVPSSKLE 460

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
                + +       +IV   F S L            +      +       I+ + EG
Sbjct: 461 RFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGRADVIRGFREG 520

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           + P+      + G GL L    + +     WW+        E   V R  + G +R V V
Sbjct: 521 EAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAA-----EAQAVDRAHRIGQERTVMV 574

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y L+++ TI+E VL+    K+ +   L++ 
Sbjct: 575 YRLVSEGTIEEKVLELQWRKAELFGALMDE 604


>gi|239918579|ref|YP_002958137.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
 gi|239839786|gb|ACS31583.1| DNA/RNA helicase, superfamily II, SNF2 family [Micrococcus luteus
            NCTC 2665]
          Length = 1143

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +     +R++   L   +   F           LA      D+   +  V   K++
Sbjct: 916  KLYDRVLQRERRKVLGLLGDMDGNRFTIFKSLTLLRMLALAPQIVDD--QYASVPSSKLE 973

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
                 + +       +IV   F S L            +      +       I+ + EG
Sbjct: 974  RFLDDLTEVIGEGHRVIVFSQFTSFLRVIAEELDHLEIEHAYLDGSTRGRADVIRGFREG 1033

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GL L    + +     WW+        E   V R  + G +R V V
Sbjct: 1034 EAPVFLISLKAGGFGLTLTE-ADYVFLMDPWWNPAA-----EAQAVDRAHRIGQERTVMV 1087

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+++ TI+E VL+    K+ +   L++ 
Sbjct: 1088 YRLVSEGTIEEKVLELQWRKAELFGALMDE 1117


>gi|167464191|ref|ZP_02329280.1| SWF/SNF family helicase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 948

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 29/217 (13%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDE--EKHWKEVHDEKIKA 58
            Y  +  ++   L   G         +   K  Q+ N      +       E    K+  
Sbjct: 714 LYENYIHDMLDRLNQAGGMGRRGIILAALTKLKQICNHPALVLKERPGGPWEQRSGKLDR 773

Query: 59  LEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
           L  ++ +        ++   F             +L         G +       I  + 
Sbjct: 774 LVEMVHELRDEGDKCLIFTQFVDTGFLLQHVLEQELGHPVLFLHGGSSKADRDKMIARFQ 833

Query: 106 EGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +P      +      + G GLNL    N +  F  WW+       +E     R  + 
Sbjct: 834 DLTLPEDEQRYVFLLSLKAGGTGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAYRI 887

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  R V V+  I   T++E + + +  K  +   ++ 
Sbjct: 888 GQTRNVQVHKFITLGTLEERIDEMIEQKLGLSQQIVG 924


>gi|239826817|ref|YP_002949441.1| non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
 gi|239807110|gb|ACS24175.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           WCH70]
          Length = 933

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++     +  N                Q+ +    Y +E+  + V     K+K 
Sbjct: 702 LYEQLVQDTLERAKDANPFQRRGLILQMLNGVKQICDHPALYLKERTPRRVLERSHKLKK 761

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  ++E+   N    ++   +      +Q+                         ++++ 
Sbjct: 762 LVELLEQIRANDESCLIFTQYVRMGDMIQQLLADLFDEPVLFLNGSVPKAARDRMVEQFQ 821

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + + P+      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 822 KRQAPIFILSLKAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAYRIGQTKFV 875

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI   TI+E +   L  K  + D++   
Sbjct: 876 HVHKLITTGTIEEKIDDMLEQKLALADVITEG 907


>gi|327403655|ref|YP_004344493.1| SNF2-like protein [Fluviicola taffensis DSM 16823]
 gi|327319163|gb|AEA43655.1| SNF2-related protein [Fluviicola taffensis DSM 16823]
          Length = 1124

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 18/206 (8%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y    +E         +   + +  +   K  Q+ N     +E          KI+ L 
Sbjct: 907  VYKTELKEYLMSEPDFTDGQSSMHVLAGLTKLRQICNSPALINENGVSYGEQSAKIQELM 966

Query: 61   V-IIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWN-EGKIP 110
              I +K     I+V   F   L         R            K    +  +     I 
Sbjct: 967  EQIEDKKKHHKILVFSQFVGMLKLVERALEERSIPYSLLTGQTKKRKEVVNAFQENEHIR 1026

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    + +     WW+       +E   + R  + G  + V     
Sbjct: 1027 VFLISLKAGGMGLNLTQ-ADYVYLLDPWWNPA-----VENQAIDRAYRIGQDKKVVAVRF 1080

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            I  NTI+E +L+  + K  +   L++
Sbjct: 1081 ITPNTIEEKILELQKRKQELVGDLVH 1106


>gi|222152563|ref|YP_002561738.1| helicase [Streptococcus uberis 0140J]
 gi|222113374|emb|CAR41006.1| putative helicase [Streptococcus uberis 0140J]
          Length = 1029

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 25/209 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII- 63
             + +     D+  + IE     S   +  Q+ +    + E     +    K++ L  ++ 
Sbjct: 819  DRIKNASDADINRQKIE---ILSGITRLRQICDTPSLFTEY----DGDSGKLECLRTLLL 871

Query: 64   -EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              K N    ++   F   L   +                   ++     + +N G     
Sbjct: 872  QVKENGHRALIFSQFKGMLEIAEKELEEMGLNSYKITGSTPANERQEMTRAFNNGSKDAF 931

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G    V VY LI 
Sbjct: 932  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRIGQDDNVEVYRLIT 985

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E +L    TK  +   +L+  +  
Sbjct: 986  RGTIEEKILALQETKRNLVTTVLDGDESR 1014


>gi|262182653|ref|ZP_06042074.1| DNA/RNA helicase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1023

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 3    QYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y        +     +          +   +  Q+ N   ++  +     +       K
Sbjct: 790  LYKALVNDVEQALAKKKKGISRRGLILASLTRIKQICNHPAHFLADGSPVTIKGKHRSGK 849

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQ 102
            ++ L  II++   ++   ++   + +            L      F  G + ++    ++
Sbjct: 850  VEELMRIIDQAIESSERALIFTQYKAFGDVLQPYLSEQLGCEIPFFHGGVSKNRRDQMVE 909

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+      P++     + G GLNL    +I+V    WW+       +E     R  + G 
Sbjct: 910  EFQAEDGAPVMLLSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQ 963

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 964  QRNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 1002


>gi|317126472|ref|YP_004100584.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
 gi|315590560|gb|ADU49857.1| SNF2-related protein [Intrasporangium calvum DSM 43043]
          Length = 1147

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 21/209 (10%)

Query: 3    QYHK-FQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y +  QRE       L           +   +  QLA      DE    K     K++ 
Sbjct: 926  IYDQHLQRERQRVLGLLADAEGNRVAILASLTRLRQLALDPALVDEAHRGKAT-AAKVEF 984

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGK 108
            L   + +  A     +V   F   L  ++        +      +    P  I+ +  G 
Sbjct: 985  LVEQLRELAAEGHRALVFSQFTGFLRVVEGALAAAGLRTAYLDGSTTDRPSVIRGFRHGD 1044

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                     + G GL L    + +     WW+        E   + R  + G  + V VY
Sbjct: 1045 ATAFLISLKAGGFGLTLTE-ADYVFVLDPWWNPAA-----EAQAIDRAHRIGQDKPVTVY 1098

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L++  TI+E V+     K  +   +++ 
Sbjct: 1099 RLVSAGTIEEKVVALQERKRDLFQRVVDE 1127


>gi|312885408|ref|ZP_07745049.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311302106|gb|EFQ79134.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 1110

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 3    QYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  +++E    +     +       N      K  Q+ +  +    EK   +   +   
Sbjct: 888  IYDAYEKEFREYICATSNKELAKSPINVLRGLTKLRQICDSPMLLSGEKLPGDESAKIAT 947

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGK 108
             +E I  K     I+V   F S L  ++K   Q         G T ++        N   
Sbjct: 948  LMEEITGKMANHKILVFSQFVSMLDLIKKELHQRNISFAYLTGSTRNRQKVVEDFQNNSA 1007

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLNL    + +     WW+       +E   + R  + G  + +   
Sbjct: 1008 TRVFLISLKAGGTGLNLTE-ADYVYLVDPWWNPA-----VENQAIDRSHRIGQNKNIVAV 1061

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             LI   T++E +++   +K  + + L+
Sbjct: 1062 RLICPGTVEEKMMKVQSSKRELVNDLI 1088


>gi|288917855|ref|ZP_06412216.1| SNF2-related protein [Frankia sp. EUN1f]
 gi|288350783|gb|EFC84999.1| SNF2-related protein [Frankia sp. EUN1f]
          Length = 1198

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 22/212 (10%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R+    L    N   F          QL+  A   D+     +    KI 
Sbjct: 979  RIYQTHLQRERQKILGLIGDLNRNRFTILRSLTALRQLSLHAGLVDD--EHDDTPSAKID 1036

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +          +V   F   L R+++              +       ++ + EG
Sbjct: 1037 VLLEQLRDVADGGHRALVFSQFTRFLGRVRETLTAAGIEHCYLDGSTRDRAGVLRRFKEG 1096

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +       WW+        E   V R  + G  R V V
Sbjct: 1097 SAPVFLISLKAGGSGLNLTE-ADYCFLLDPWWNPAT-----EAQAVDRTHRIGQSRNVMV 1150

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A++TI+E V+     K+ +   ++++ +
Sbjct: 1151 YRLVARDTIEEKVMALKARKAELFSGVMDSGE 1182


>gi|63054463|ref|NP_588472.2| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces pombe 972h-]
 gi|46397098|sp|O94421|SNF22_SCHPO RecName: Full=SWI/SNF chromatin-remodeling complex subunit snf22;
            AltName: Full=ATP-dependent helicase snf22; AltName:
            Full=SWI/SNF complex subunit snf22
 gi|42558222|dbj|BAD11104.1| SNF2-family ATP dependent chromatin remodeling factor Snf22
            [Schizosaccharomyces pombe]
 gi|157310533|emb|CAA22498.2| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces pombe]
          Length = 1680

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 32/225 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHD----- 53
            +K Y + ++     + GE  +      +   ++  ++ N    +++ +   +        
Sbjct: 1122 LKLYQQMKKHGMLFVDGEKGKTGIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDL 1181

Query: 54   -----EKIKALEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDK 96
                  K + L+ I+ K        ++ +     +                       D 
Sbjct: 1182 LWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDD 1241

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + ++N+ K  +        + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1242 RCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1295

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V +  LI + +I+E +L R + K  +   ++ A K
Sbjct: 1296 RAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGK 1340


>gi|325853079|ref|ZP_08171228.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
 gi|325484453|gb|EGC87374.1| SNF2 family N-terminal domain protein [Prevotella denticola CRIS
            18C-A]
          Length = 1302

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D      ++   K+ A  
Sbjct: 1083 MAMYEVRRRETEERVRANVGDKMSTLAEITRLRQMACSCSLVD---RKWKLPSSKVLAFI 1139

Query: 61   VIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             + E    +    +V   F S    +++A  +             +      ++++  GK
Sbjct: 1140 DLAESLDESGNRALVFSQFTSFFEEVKQAMDKAKLSYLYLDGSMPMAMREKLVKDFQTGK 1199

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    Q         R  + G K+ V VY
Sbjct: 1200 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQ-----QATDRAYRIGQKQNVTVY 1253

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1254 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1282


>gi|322387436|ref|ZP_08061046.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
 gi|321141965|gb|EFX37460.1| Snf2 family protein [Streptococcus infantis ATCC 700779]
          Length = 1032

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 22/211 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  L      E         +  ++  Q+ +    + E+         K+ +L  ++
Sbjct: 813  QQMQERLGQVTDAEFQRNRVEILTGLMRLRQICDTPALFMEDYK---GDSGKLDSLRDLL 869

Query: 64   EK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
             +       +++   F   L R++K  PQ               +     + +N+G+  +
Sbjct: 870  SQIAEGNHRVLIFSQFRGMLDRIEKELPQLGLTSFKITGSTPSQERQEMTKAFNQGERDV 929

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G  +AV VY L+
Sbjct: 930  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VESQAIGRAHRMGQDQAVEVYRLV 983

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + TI+E + +    K  +   +L+  +   
Sbjct: 984  TRGTIEEKIQELQEEKKNLVSEVLDGTESRG 1014


>gi|312890761|ref|ZP_07750292.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
 gi|311296754|gb|EFQ73892.1| SNF2-related protein [Mucilaginibacter paludis DSM 18603]
          Length = 964

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 18/201 (8%)

Query: 6   KFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           +++ EL   L+               +K  Q+AN     D+         E +      +
Sbjct: 751 EYRNELLKSLEDGTFAKSQMQVLQGLIKLRQIANHPSMIDDNYEGDSGKFEDVTHTLNNV 810

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFA 114
                  +++   F   L   ++ F           G T ++     +   + K  +   
Sbjct: 811 LD-GGHKVLIFSQFVKQLTIYRQHFEKEHIPYLYLDGSTQNRGEIVKKFQEDEKTRVFLI 869

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + +     WW+    QQ I+R       + G  + VF+Y  I ++
Sbjct: 870 SIKAGGVGLNLTE-ADYVFILDPWWNPAVEQQAIDR-----THRIGQTKNVFIYKFITKD 923

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           +++E +L   + K  +   L+
Sbjct: 924 SVEEKILALQQRKLKLSSALI 944


>gi|212715703|ref|ZP_03323831.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
            16992]
 gi|212661070|gb|EEB21645.1| hypothetical protein BIFCAT_00603 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1239

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 26/213 (12%)

Query: 2    KQY---HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y    +  R      +  +         ++     ++         +         K+
Sbjct: 1017 KLYAAHEQRLRATLTKTKDADFNTKKIRILAEFTLLREICCDPRLVYADAKNA---SAKL 1073

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
             A+  ++         ++V   F S L  +                     +    + E+
Sbjct: 1074 DAICELVSTCMDEGKKVLVFSQFTSFLDLIGTRLAEHGVDFYTITGETPKKRRVELVDEF 1133

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   IP+      +   GLNL  G +++V    WW+              R  + G  + 
Sbjct: 1134 NGNDIPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQ-----NQATDRAHRIGQTQD 1187

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+    KS +     + 
Sbjct: 1188 VNVYQIVAKDTIEERILKLQEKKSELAQQFTDG 1220


>gi|154271055|ref|XP_001536381.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           NAm1]
 gi|150409604|gb|EDN05048.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           NAm1]
          Length = 1275

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 709 KLQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKVLSKKPSYNYGSAS 768

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L             +     G T  K   
Sbjct: 769 KSGKMQVVKSLLELWRDTGHKTLLFTQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQ 828

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 829 KMVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 882

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 883 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|325687137|gb|EGD29160.1| Snf2 family protein [Streptococcus sanguinis SK72]
          Length = 1033

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E         S  ++  Q+ +    + E+    E    K+++L  + 
Sbjct: 816  KQMQDRIIHATEDEINRSKIEILSGLMRLRQICDTPKLFMEDY---EGESGKLESLRELF 872

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                    +       +N+G+   
Sbjct: 873  EQIQDGNRRVLIFSQFRGMLDIIENELDKLGMDSFKITGSTPAKERQDMTTAFNDGQRSA 932

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +R V VY +I
Sbjct: 933  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRIGQERNVEVYRMI 986

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  + +
Sbjct: 987  TRGTIEEKIQELQESKRNLVSTILDGAEAK 1016


>gi|307127728|ref|YP_003879759.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            670-6B]
 gi|306484790|gb|ADM91659.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            670-6B]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPSKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|301802243|emb|CBW34994.1| putative SNF-family helicase [Streptococcus pneumoniae INV200]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|301794535|emb|CBW36977.1| putative SNF-family helicase [Streptococcus pneumoniae INV104]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|84619206|emb|CAJ42330.1| SNF2 related domain [Streptomyces steffisburgensis]
          Length = 618

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y +     + +  G  IE      +      Q+ N    Y  E+        K    
Sbjct: 386 VRLYREAVDRAFDEGLGGGIERRGRVLALLTSLKQICNHPAQYLREEAAGTGRSGKFDRA 445

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPCTIQEWN 105
             ++ +   +    +V   +                         G + DK    + ++ 
Sbjct: 446 AEMLAEIVDDGDRALVFTQYRVMGDLLAGHLSQHLGTGPIPFLHGGLSPDKRDRLVHDFQ 505

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +   P+L     + G GLNL    N ++ +  WW+       +E     R  + G +R
Sbjct: 506 ESDDAPPVLLLSLRAAGFGLNLTR-ANHVMHYDRWWNPA-----VEEQATDRAHRIGQQR 559

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + V+ L+   TI++ + Q   TK    D++
Sbjct: 560 TLNVHALVTGGTIEDHIAQMHETKRGFADVV 590


>gi|149198233|ref|ZP_01875280.1| swf/snf family helicase [Lentisphaera araneosa HTCC2155]
 gi|149138835|gb|EDM27241.1| swf/snf family helicase [Lentisphaera araneosa HTCC2155]
          Length = 1308

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 24/209 (11%)

Query: 3    QYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y+  +      L    G+  + F    +  +  Q A      D++   +     K+K  
Sbjct: 1091 VYNGLRARASDRLGKRGGDRNDKFFILEEITRLRQAACSPSLLDKQFSDQ---SAKLKRF 1147

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEG 107
              ++++        +V   F S L  ++K                   K P  ++++  G
Sbjct: 1148 IELVKELKEAGHRALVFSQFTSFLDLVEKALAEEDVDFLRLDGSTPAKKRPQLVKKFQVG 1207

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            K  +      + G GLNL    N ++    WW+       +E     R  + G ++AV V
Sbjct: 1208 KSSVFLISLKAGGFGLNLTA-ANYVIHLDPWWNPA-----VEDQATDRAHRIGQEKAVTV 1261

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI++ TI+E +L+   +K  + D +L 
Sbjct: 1262 YRLISEGTIEEKILKLHESKRELADFMLG 1290


>gi|306834168|ref|ZP_07467288.1| Snf2 family protein [Streptococcus bovis ATCC 700338]
 gi|304423741|gb|EFM26887.1| Snf2 family protein [Streptococcus bovis ATCC 700338]
          Length = 1026

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E        +I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 812  RQMQ-ETIAGASDADINRRKIEILSGITRLRQICDTPSLFMDY----NGESGKLDSLRTL 866

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP 110
            + +   N    ++   F   L   +K   +              +      + +N G   
Sbjct: 867  LIQVKENGHRALIFSQFRGMLDIAEKEMEELGLTSYKITGSTPANARQEMTRAFNNGSKD 926

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G K  V VY L
Sbjct: 927  TFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKANVEVYRL 980

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I + TI+E +L+   +K  +   +L+ 
Sbjct: 981  ITRGTIEEKILEMQESKKNLVTTVLDG 1007


>gi|225857148|ref|YP_002738659.1| Snf2 family protein [Streptococcus pneumoniae P1031]
 gi|225726227|gb|ACO22079.1| Snf2 family protein [Streptococcus pneumoniae P1031]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 73/212 (34%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F           SDL              +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELSDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNL-SGADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|15806278|ref|NP_294983.1| SNF2/RAD54 family DNA helicase [Deinococcus radiodurans R1]
 gi|6459005|gb|AAF10831.1|AE001973_4 DNA helicase, SNF2/RAD54 family [Deinococcus radiodurans R1]
          Length = 600

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 66/195 (33%), Gaps = 16/195 (8%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN 78
                    +K  Q          E   +   + K+  LE  + +       +++   F 
Sbjct: 389 STIAILDALLKLRQAVTDPRLVKLEAAREVQGNAKLDWLETNLPQMVEEGRRVLIFSGFA 448

Query: 79  SDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           + L  L++   +                  I  +  G+  +      + G GLNL    +
Sbjct: 449 TLLGHLEEFLKREGIPYSKITGQTKDRQKQIDAFQAGETHVFLITLKAGGVGLNLTA-AD 507

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +  WW+        E     R  + G  + VFVY LIA  +++E +L     K+ +
Sbjct: 508 TVIHYDPWWNPAA-----EDQATDRAYRIGQDKPVFVYKLIAAGSVEERILDLQARKAAL 562

Query: 191 QDLLLNALKKETIHV 205
              +L+    +   +
Sbjct: 563 ARGVLDGGLTDATQL 577


>gi|293365804|ref|ZP_06612510.1| Snf2 family protein [Streptococcus oralis ATCC 35037]
 gi|307703327|ref|ZP_07640271.1| bacterial SNF2 helicase associated family protein [Streptococcus
            oralis ATCC 35037]
 gi|291315737|gb|EFE56184.1| Snf2 family protein [Streptococcus oralis ATCC 35037]
 gi|307623103|gb|EFO02096.1| bacterial SNF2 helicase associated family protein [Streptococcus
            oralis ATCC 35037]
          Length = 1031

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDYQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPVLGLTSFKITGSTPAHDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQMVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|115375420|ref|ZP_01462681.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310821127|ref|YP_003953485.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367547|gb|EAU66521.1| SWI/SNF family helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309394199|gb|ADO71658.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 982

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%)

Query: 3   QYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y         +   L  E      +    ++  Q A  +     +         K++ L
Sbjct: 766 VYDAVMAATRAEVVALLNEGGSVLKALEALLRLRQAACHSALVPGQHATS---SSKVQTL 822

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGK- 108
              +    +     +V   + S L  ++               T          +   + 
Sbjct: 823 VEALGTAVSEGHKALVFSQWTSLLDLIEPGLKGAGIAFERLDGTTADRGAVTTRFQSPEG 882

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P++     + G GLNL    + +     WW+       +E     R  + G +R V VY
Sbjct: 883 APVMLMSLKAGGTGLNLTA-ADHVFLMDPWWNPA-----VEAQAADRAHRIGQERPVMVY 936

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L++Q T++E +L     K  I +  L+ 
Sbjct: 937 RLVSQGTVEERILGLQEKKRAIFEAALSE 965


>gi|88809531|ref|ZP_01125039.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
 gi|88786750|gb|EAR17909.1| hypothetical protein WH7805_10274 [Synechococcus sp. WH 7805]
          Length = 1070

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
             Y K        +        +        +  Q+ N      +E            K++
Sbjct: 835  LYAKTVENTLDAIARAPRGKRHGQVLGLLTRLKQICNHPALALKEEVAGDDFLQRSVKLQ 894

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
             LE I+E+        ++   F      LQ    +             +  +    +  +
Sbjct: 895  RLEEILEEVIAAGDRALLFTQFAEWGHLLQGYLQRRWRSEVPFLSGSTSKGERQAMVDRF 954

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 955  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDRAYRIGQT 1008

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V V+  I   +++E + + +R KS + + ++ + ++
Sbjct: 1009 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIVGSGEE 1046


>gi|168488816|ref|ZP_02713015.1| Snf2 family protein [Streptococcus pneumoniae SP195]
 gi|183572774|gb|EDT93302.1| Snf2 family protein [Streptococcus pneumoniae SP195]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|325091990|gb|EGC45300.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           H88]
          Length = 1092

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 530 KLQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLAEHKVLSKKPSYNYGSAS 589

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L             +     G T  K   
Sbjct: 590 KSGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQ 649

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 650 KMVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 703

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 704 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 747


>gi|15901369|ref|NP_345973.1| Snf2 family protein [Streptococcus pneumoniae TIGR4]
 gi|111658366|ref|ZP_01409053.1| hypothetical protein SpneT_02000445 [Streptococcus pneumoniae TIGR4]
 gi|14973013|gb|AAK75613.1| Snf2 family protein [Streptococcus pneumoniae TIGR4]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|327313991|ref|YP_004329428.1| SNF2 family N-terminal domain-containing protein [Prevotella
            denticola F0289]
 gi|326946179|gb|AEA22064.1| SNF2 family N-terminal domain protein [Prevotella denticola F0289]
          Length = 1340

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            M  Y   +RE    ++    +  ++ ++  +  Q+A      D      ++   K+ A  
Sbjct: 1121 MAMYEVRRRETEERVRANVGDKMSTLAEITRLRQMACSCSLVD---RKWKLPSSKVLAFI 1177

Query: 61   VIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             + E    +    +V   F S    +++A  +             +      ++++  GK
Sbjct: 1178 DLAESLDESGNRALVFSQFTSFFEEVKQAMDKAKLSYLYLDGSTPMAMREKLVKDFQTGK 1237

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL  G N ++    WW+    Q         R  + G K+ V VY
Sbjct: 1238 CPFFLISLKAGGLGLNLT-GANYVIHLDPWWNPAIEQ-----QATDRAYRIGQKQNVTVY 1291

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI+Q+TI+E +L+  +TK  + D LL  
Sbjct: 1292 HLISQHTIEEKILRLHKTKRNLSDSLLEG 1320


>gi|168491585|ref|ZP_02715728.1| Snf2 family protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574164|gb|EDT94692.1| Snf2 family protein [Streptococcus pneumoniae CDC0288-04]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTEAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|225859280|ref|YP_002740790.1| Snf2 family protein [Streptococcus pneumoniae 70585]
 gi|225720179|gb|ACO16033.1| Snf2 family protein [Streptococcus pneumoniae 70585]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148992589|ref|ZP_01822257.1| Snf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|168484940|ref|ZP_02709885.1| Snf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|147928606|gb|EDK79620.1| Snf2 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|172041922|gb|EDT49968.1| Snf2 family protein [Streptococcus pneumoniae CDC1873-00]
 gi|332072316|gb|EGI82799.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA17570]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|149003261|ref|ZP_01828157.1| Snf2 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|237650205|ref|ZP_04524457.1| Snf2 family protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820912|ref|ZP_04596757.1| Snf2 family protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758721|gb|EDK65718.1| Snf2 family protein [Streptococcus pneumoniae SP14-BS69]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|293375830|ref|ZP_06622099.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
 gi|292645538|gb|EFF63579.1| SNF2 family N-terminal domain protein [Turicibacter sanguinis PC909]
          Length = 1080

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++E++ +++  G         +  ++  QL      Y E    +     K+     ++
Sbjct: 861  QMKQEMHHEIEEVGVERSRIKILALLMRLRQLCCHPSLYLENYRGE---SAKLNLCMQLV 917

Query: 64   EKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPL 111
            +    +   +++   F S L  L +                         +++N+    +
Sbjct: 918  QDCIASGHKVLIFSQFTSMLEILGRELKAKEIKFLTLTGATKTSDRLALTEQFNQDDTKV 977

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G ++++ +  WW++             R  + G  + V V+ L+
Sbjct: 978  FLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQ-----NQATDRAHRLGQDKTVQVFKLM 1031

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             +NTI+E +      K  + + ++
Sbjct: 1032 VKNTIEERIQVLQEQKRDLTEAIV 1055


>gi|225861356|ref|YP_002742865.1| Snf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230251|ref|ZP_06963932.1| Snf2 family protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298503259|ref|YP_003725199.1| Snf2 family helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727638|gb|ACO23489.1| Snf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238854|gb|ADI69985.1| Snf2 family helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327389708|gb|EGE88053.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA04375]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|221232235|ref|YP_002511388.1| putative SNF-family helicase [Streptococcus pneumoniae ATCC 700669]
 gi|220674696|emb|CAR69269.1| putative SNF-family helicase [Streptococcus pneumoniae ATCC 700669]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|317034915|ref|XP_001400735.2| DNA repair protein Rhp26/Rad26 [Aspergillus niger CBS 513.88]
          Length = 1214

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------KHWKEVHD 53
           + Y  F    E+   L G                ++ N     + +       +      
Sbjct: 702 QAYEAFLGSEEMKSILNG----RRQVLFGVDILRKICNHPDLQNHKLMSSTTGYGSGSKS 757

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   K      ++       L               ++         +   
Sbjct: 758 GKMQVVKSLLELWKDTGHKTLLFTQHRIMLDILEKFVNSLSGFSYRRMDGTTPIQHRQAM 817

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 818 VDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 871

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 872 GQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 913


>gi|307706218|ref|ZP_07643035.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK321]
 gi|307618408|gb|EFN97558.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK321]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 9    RELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            R+    +  +          S  ++  Q+ +    + E+         K+ +L  ++ + 
Sbjct: 816  RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDLLVQV 872

Query: 66   -ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                  +++   F   L                        +     + +N+G+      
Sbjct: 873  ADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLI 932

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L+ + 
Sbjct: 933  SLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRLVTKG 986

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            TI+E + +    K  +   +L+  +   
Sbjct: 987  TIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|168493424|ref|ZP_02717567.1| Snf2 family protein [Streptococcus pneumoniae CDC3059-06]
 gi|183576378|gb|EDT96906.1| Snf2 family protein [Streptococcus pneumoniae CDC3059-06]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148988567|ref|ZP_01820000.1| Snf2 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147925768|gb|EDK76843.1| Snf2 family protein [Streptococcus pneumoniae SP6-BS73]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|15903418|ref|NP_358968.1| Snf2 family protein [Streptococcus pneumoniae R6]
 gi|116516877|ref|YP_816813.1| Snf2 family protein [Streptococcus pneumoniae D39]
 gi|15459024|gb|AAL00179.1| SWF/SNF family ATP-dependent RNA helicase [Streptococcus pneumoniae
            R6]
 gi|116077453|gb|ABJ55173.1| Snf2 family protein [Streptococcus pneumoniae D39]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|313623518|gb|EFR93710.1| SNF2 family helicase [Listeria innocua FSL J1-023]
          Length = 650

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 3   QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y  +  ++  DL+  N  A        +   +  Q+      + E    +     K+  
Sbjct: 423 IYLAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQ 479

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
           L   I+  + N   I++   F   LA ++                         +  +NE
Sbjct: 480 LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQSLFYMDGKTPAKTRLDMVNAFNE 539

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G KR V 
Sbjct: 540 GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQ 593

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V+ +I + TI+E +    + K  + D L+ 
Sbjct: 594 VFRMITKGTIEERIFDLQKKKQALVDELIQ 623


>gi|282891309|ref|ZP_06299811.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498806|gb|EFB41123.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1166

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 2    KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y +  RE    L   +G +    +  +   +  Q+      + +EK  +     K   
Sbjct: 945  RSYAQSAREELSQLVSKEGFDKVQIHVLATLTRLKQICCHPAIFAKEKP-EGGDSSKYDM 1003

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWN-EG 107
            L  +I          ++   +   L  ++          +            ++++N + 
Sbjct: 1004 LMELIPTLIEGKHKTVIFSQYTRMLNIIRDDLSSQGIPFEYLDGSSKNRLNIVKKFNEDE 1063

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             IP+      + G GLNL  G + ++ + +WW+       +E     R  + G K++V  
Sbjct: 1064 NIPIFLVSLKAGGTGLNL-IGADTVIHYDMWWNPA-----VENQATDRVHRLGQKKSVLS 1117

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y LI   TI+E +LQ  + K      +++
Sbjct: 1118 YKLITLGTIEEKILQLQQQKEGHVKKVVS 1146


>gi|149021792|ref|ZP_01835799.1| Snf2 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147930028|gb|EDK81015.1| Snf2 family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|332073859|gb|EGI84337.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA41301]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|225555676|gb|EEH03967.1| DNA dependent ATPase [Ajellomyces capsulatus G186AR]
          Length = 1276

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 709 KLQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKVLSKKPSYNYGSAS 768

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L             +     G T  K   
Sbjct: 769 KSGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIISMGGFKYQRMDGNTPIKFRQ 828

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 829 KMVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 882

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 883 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|149011758|ref|ZP_01832954.1| Snf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182684478|ref|YP_001836225.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|303255308|ref|ZP_07341378.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|303260148|ref|ZP_07346120.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262538|ref|ZP_07348479.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264940|ref|ZP_07350855.1| snf2 family protein [Streptococcus pneumoniae BS397]
 gi|303267250|ref|ZP_07353114.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|303269560|ref|ZP_07355323.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|147764189|gb|EDK71121.1| Snf2 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182629812|gb|ACB90760.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|302597676|gb|EFL64752.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|302636255|gb|EFL66749.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638645|gb|EFL69108.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302640904|gb|EFL71288.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|302643215|gb|EFL73498.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|302645459|gb|EFL75691.1| snf2 family protein [Streptococcus pneumoniae BS397]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148997416|ref|ZP_01825021.1| Snf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168575282|ref|ZP_02721245.1| Snf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|307068167|ref|YP_003877133.1| superfamily II DNA/RNA helicase [Streptococcus pneumoniae AP200]
 gi|147756471|gb|EDK63512.1| Snf2 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|183578817|gb|EDT99345.1| Snf2 family protein [Streptococcus pneumoniae MLV-016]
 gi|306409704|gb|ADM85131.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            pneumoniae AP200]
          Length = 1032

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|325841031|ref|ZP_08167240.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
 gi|325490097|gb|EGC92440.1| SNF2 family N-terminal domain protein [Turicibacter sp. HGF1]
          Length = 1080

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 6    KFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++E++ +++  G         +  ++  QL      Y E    +     K+     ++
Sbjct: 861  QMKQEMHHEIEEVGVERSRIKILALLMRLRQLCCHPSLYLENYRGE---SAKLNLCMQLV 917

Query: 64   EKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPL 111
            +    +   +++   F S L  L +                         +++N+    +
Sbjct: 918  QDCIASGHKVLIFSQFTSMLEILGRELKAKEIKFLTLTGATKTSDRLALTEQFNQDDTKV 977

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G ++++ +  WW++             R  + G  + V V+ L+
Sbjct: 978  FLISLKAGGTGLNLT-GADVVIHYDPWWNMSAQ-----NQATDRAHRLGQDKTVQVFKLM 1031

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             +NTI+E +      K  + + ++
Sbjct: 1032 VKNTIEERIQVLQEQKRDLTEAIV 1055


>gi|119025981|ref|YP_909826.1| helicase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765565|dbj|BAF39744.1| possible helicase [Bifidobacterium adolescentis ATCC 15703]
          Length = 1279

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L   +      +     ++     ++         +         K+
Sbjct: 1057 KLYAAHEQRLRATLTKASDADFNTKKIRILAEFTLLREICCDPRLVYADAKNA---SAKL 1113

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++         ++V   F S L                        +    + E+
Sbjct: 1114 DAIVELVATCMDEGKKVLVFSQFTSFLELIGARLAEQGVEYYTITGETPKKRRVELVDEF 1173

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G +++V    WW+              R  + G  + 
Sbjct: 1174 NGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQ-----NQATDRAHRIGQTQD 1227

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+    K+ +     + 
Sbjct: 1228 VNVYQIVAKDTIEERILKLQEKKNELARQFTDG 1260


>gi|227495218|ref|ZP_03925534.1| SNF2 family superfamily II DNA/RNA helicase [Actinomyces coleocanis
            DSM 15436]
 gi|226831670|gb|EEH64053.1| SNF2 family superfamily II DNA/RNA helicase [Actinomyces coleocanis
            DSM 15436]
          Length = 1048

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 2    KQYH----KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y     + ++EL    +  + + F   +   +  QLA      +++K W E    +  
Sbjct: 832  KTYDRYLNQHRKELLALAEDTHSQGFKIITGLNQLRQLALDPQLVEKDKDWPESAKTQAL 891

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKI 109
               ++  +A     +V   + S L R++ A  +             K    I+ +     
Sbjct: 892  IDLLLPLQAEGKKSLVFSQYTSYLQRIRTALNEAGITTSYLDGGTQKRGEVIENFKHSDT 951

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GL L      +     WW+        E   + R  + G +  V VY 
Sbjct: 952  NVFLISLKAGGTGLTLTE-AENVFILDPWWNPAT-----ENQAIDRAHRIGQENTVNVYR 1005

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL-NALKK 200
            L + +TI+E V+     K  + D ++   +K 
Sbjct: 1006 LCSADTIEEKVMALQVHKRQVADAIIGEEVKA 1037


>gi|77460089|ref|YP_349596.1| SNF2-like [Pseudomonas fluorescens Pf0-1]
 gi|77384092|gb|ABA75605.1| putative helicase [Pseudomonas fluorescens Pf0-1]
          Length = 896

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK-HWKEVHDEK 55
            Y   +    +++  ++  + +           +K  Q+       ++     +     K
Sbjct: 664 VYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDATLPARGSTSGK 723

Query: 56  IK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN 105
           +      +         I++   F S L+ ++    +                  ++E+ 
Sbjct: 724 LDSLMEMLEELFEEGRRILLFSQFTSMLSLIEDELKKRNVAYALLTGQTRDRRTPVKEFQ 783

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            GK  +      + G GLNL    + ++ +  WW+        E     R  + G ++ V
Sbjct: 784 SGKRQIFLISLKAGGVGLNLTE-ADTVIHYDPWWNPAT-----ENQATDRAYRIGQEKPV 837

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           FVY +IA+ T++E +    R KS +   +L+  K 
Sbjct: 838 FVYKMIARGTVEEKIQLLQREKSDLAAGVLDGRKA 872


>gi|169832962|ref|YP_001694930.1| Snf2 family protein [Streptococcus pneumoniae Hungary19A-6]
 gi|168995464|gb|ACA36076.1| Snf2 family protein [Streptococcus pneumoniae Hungary19A-6]
          Length = 1032

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQM-RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + Q TI+E + +    K  +   +L+  +   
Sbjct: 983  VTQGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|168487493|ref|ZP_02712001.1| Snf2 family protein [Streptococcus pneumoniae CDC1087-00]
 gi|183569678|gb|EDT90206.1| Snf2 family protein [Streptococcus pneumoniae CDC1087-00]
          Length = 1032

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|148984868|ref|ZP_01818121.1| Snf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147922890|gb|EDK74006.1| Snf2 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301800358|emb|CBW32988.1| putative SNF-family helicase [Streptococcus pneumoniae OXC141]
          Length = 1034

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 815  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 870

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 871  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 930

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 931  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 984

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 985  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1016


>gi|315613488|ref|ZP_07888396.1| Snf2 family protein [Streptococcus sanguinis ATCC 49296]
 gi|315314484|gb|EFU62528.1| Snf2 family protein [Streptococcus sanguinis ATCC 49296]
          Length = 1031

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 24/211 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + ++         K+ +L  +
Sbjct: 812  QQM-RDRLAQVTDQEFQRSRVEILSGLMRLRQICDTPALFMDDFQGA---SGKLDSLRDL 867

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                              + +N+G+  
Sbjct: 868  LLQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAHDRQEMTKAFNQGERD 927

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY L
Sbjct: 928  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEQMVEVYRL 981

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E + +    K  +   +L+  +  
Sbjct: 982  ITKGTIEEKIQELQEQKKHLVSQVLDGTESR 1012


>gi|261416687|ref|YP_003250370.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
 gi|261373143|gb|ACX75888.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
          Length = 1284

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 52/243 (21%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS-------------ASKTVKCLQLANGAVYYDE----- 44
             Y K       +L+ E   +  +                 +   Q+ N    + +     
Sbjct: 1026 LYQKTLEHFMQELEMEQALSEKANDAHALFKRKGIILQMILALKQICNHPATFLKGLAAT 1085

Query: 45   --------------EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSD-------- 80
                           +   ++   K++ L  ++   +      ++   F           
Sbjct: 1086 SAQDAAEVPTESAAPQKSNKLESGKMQMLLDLLTSIQEQGEKTLIFTQFAEMGHLLKSTI 1145

Query: 81   ---LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               L      +  G T  +    IQ++       +L     + G GLNL    + ++ + 
Sbjct: 1146 ESELGLRTHFYHGGCTQTQRSEMIQDFQENPDCKVLILSLKAGGTGLNLVA-ASQVIHYD 1204

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LWW+       IE     R  + G KR V V+  I + T +E +   L TK  I +L +N
Sbjct: 1205 LWWNPA-----IEAQATDRAFRIGQKRNVQVHRFITKGTFEEKINALLETKKAIANLTVN 1259

Query: 197  ALK 199
            A +
Sbjct: 1260 AGE 1262


>gi|268324723|emb|CBH38311.1| hypothetical protein containing helicase conserved C-terminal
           domain [uncultured archaeon]
          Length = 205

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
           +K  Q+ N    + ++         K+  LE ++E+  A     ++   F      L+  
Sbjct: 1   MKLKQITNHPALFLQDGSPLPGRSGKLARLEAMLEEVLAEGDKALIFTQFAGMGVMLRHY 60

Query: 88  F-----------PQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
                         G T  +    I  +       PL      + G GLNL    N +  
Sbjct: 61  LQEKLGCETLFLHGGTTKKQRDAMILRFQTDPHGPPLFILSLKAGGIGLNLTA-ANHVFH 119

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F  WW+       +E     R  + G ++ V V+  I   T++E + Q +  K  + + +
Sbjct: 120 FDRWWNPA-----VENQATDRVFRIGQRKNVQVHKFICIGTLEERIDQMIERKKELAESI 174

Query: 195 LNALKK 200
           + A + 
Sbjct: 175 IGAGEA 180


>gi|94985591|ref|YP_604955.1| SNF2-related [Deinococcus geothermalis DSM 11300]
 gi|94555872|gb|ABF45786.1| Superfamily II DNA/RNA helicase, SNF2 family [Deinococcus
            geothermalis DSM 11300]
          Length = 1126

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y          +  +L    +     A     +K  Q A        E   +     K+
Sbjct: 892  LYETVRVTMLERVREELGARGLARSTVAILDALLKLRQAATDPRLVKLEAARRVKGSAKL 951

Query: 57   KALEVIIEKA--NAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              L   + +       +++   F         +                     +Q + +
Sbjct: 952  DWLTQNLPQMVEEGRRVLIFSQFATLLGLLEETLGELGLGYTKLTGQTKDRATPVQRFQQ 1011

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++P+      + G GLNL    + ++    WW+        E     R  + G  + VF
Sbjct: 1012 GEVPVFLISLKAGGVGLNLTA-ADTVIHLDPWWNPAA-----ENQATDRAYRIGQDKPVF 1065

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VY LIA  +++E +L   + KS +   +L+ 
Sbjct: 1066 VYKLIAAGSVEERILDLQQRKSALAQGVLDG 1096


>gi|322377010|ref|ZP_08051503.1| Snf2 family protein [Streptococcus sp. M334]
 gi|321282817|gb|EFX59824.1| Snf2 family protein [Streptococcus sp. M334]
          Length = 1032

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQM-RDRLSQVSDQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGMTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|242795848|ref|XP_002482676.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218719264|gb|EED18684.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1210

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------KHWKEVHDEK 55
           K Y +F      +                   ++ N       +       +       K
Sbjct: 707 KAYEQFLNSQ--ECNSIFAGRRQVLYGVDMLRKICNHPDLVTHKLFSTTTGYGDASKSGK 764

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQ 102
           ++ ++ ++   K      ++       L  L            +       + +    + 
Sbjct: 765 MQVVKALLELWKDTGHKTLLFAQHRIMLNILEKFVNTLSGFNYRRMDGDTPIHRRQLLVD 824

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N    I +        G G+NL  G + ++ +   W+              R  + G 
Sbjct: 825 EFNNSPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDM-----QARERAWRLGQ 878

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 879 KREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 918


>gi|242002592|ref|XP_002435939.1| DNA excision repair protein ERCC-6, putative [Ixodes scapularis]
 gi|215499275|gb|EEC08769.1| DNA excision repair protein ERCC-6, putative [Ixodes scapularis]
          Length = 982

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 37/228 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------------EEK 46
            Y ++      ++    +         +   ++ N    +D                E +
Sbjct: 263 LYRQYLD--TPEIASILVGRLQVFVGLINLRKICNHPDLFDGGPKVFKDTDLSTLPAEMR 320

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
           +       K+  +E ++   K     +++             F  D             +
Sbjct: 321 YGFPGRSGKMAVVESLLKLWKRQGHRVLLFTQSRQMLLILEKFVQDQGYKYMVMTGSTPI 380

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I ++N +  + +        G G+NL  G + +V +   W+        +    
Sbjct: 381 ASRQPAINKFNADTSVFVFLLTTRVGGLGVNLT-GADRVVIYDPDWNPST-----DTQAR 434

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  R V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 435 ERAWRIGQLRDVTIYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 482


>gi|154488684|ref|ZP_02029533.1| hypothetical protein BIFADO_01991 [Bifidobacterium adolescentis
            L2-32]
 gi|154082821|gb|EDN81866.1| hypothetical protein BIFADO_01991 [Bifidobacterium adolescentis
            L2-32]
          Length = 1272

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L   +      +     ++     ++         +         K+
Sbjct: 1050 KLYAAHEQRLRATLTKASDADFNTKKIRILAEFTLLREICCDPRLVYADAKNA---SAKL 1106

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             A+  ++         ++V   F S L                        +    + E+
Sbjct: 1107 DAIAELVATCMGEGKKVLVFSQFTSFLELIGARLAEQGVEYYTITGETPKKRRVELVDEF 1166

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G +++V    WW+              R  + G  + 
Sbjct: 1167 NGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQ-----NQATDRAHRIGQTQD 1220

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+    K+ +     + 
Sbjct: 1221 VNVYQIVAKDTIEERILKLQEKKNELARQFTDG 1253


>gi|134081405|emb|CAK46446.1| unnamed protein product [Aspergillus niger]
          Length = 1223

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------KHWKEVHD 53
           + Y  F    E+   L G                ++ N     + +       +      
Sbjct: 711 QAYEAFLGSEEMKSILNG----RRQVLFGVDILRKICNHPDLQNHKLMSSTTGYGSGSKS 766

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   K      ++       L               ++         +   
Sbjct: 767 GKMQVVKSLLELWKDTGHKTLLFTQHRIMLDILEKFVNSLSGFSYRRMDGTTPIQHRQAM 826

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 827 VDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 880

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 881 GQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 922


>gi|182415317|ref|YP_001820383.1| non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
 gi|177842531|gb|ACB76783.1| Non-specific serine/threonine protein kinase [Opitutus terrae
           PB90-1]
          Length = 848

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 72/254 (28%), Gaps = 67/254 (26%)

Query: 5   HKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            + +REL+    G   EA   F + ++ ++  Q+       +        H         
Sbjct: 583 QRLERELFDLEAGGASEAKLRFAALTQLLRLRQICCDPRLVEWHGRPAHDHGRDARATPD 642

Query: 53  ------------------------------------DEKIKALEVIIEK--ANAAPIIVA 74
                                                 K+ A   ++ +   +   ++V 
Sbjct: 643 APGPQLSTLNSQLSLPPPTLNAQPSAPLSAPPPFPDSAKLDAFRELLAEAVDDGHRVLVF 702

Query: 75  YHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             F S LA                        +     +  N   IP+      + G GL
Sbjct: 703 SQFTSLLALLREELAVQETAHCYLDGSMPPRARQAEVDRFQNSPDIPVFLISLKAGGTGL 762

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + +V F  WW+        E     R  + G  R V  Y LIA  T++E VL  
Sbjct: 763 NLTA-ADTVVHFDPWWNPAA-----EAQATDRAHRIGQSRIVTSYKLIASGTVEEKVLAL 816

Query: 184 LRTKSTIQDLLLNA 197
              K  +   +  A
Sbjct: 817 QEEKRALLAGVFEA 830


>gi|305681970|ref|ZP_07404774.1| SNF2 family N-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658443|gb|EFM47946.1| SNF2 family N-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 968

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y  +  +L   L+                K  Q+ N   ++  +             K+
Sbjct: 737 LYTAYVNDLTTQLEQAEGIGRRGLVLASLTKIKQICNHPAHFLGDGSPMLRGNHHRSGKV 796

Query: 57  KALEVIIE--KANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           + L  I+E  + +   +++   + +              +       G +       +Q+
Sbjct: 797 EELMQIVENARDHGEKVLIFTQYKAFGDMLTPYLSDYYGQKIPFLHGGVSKSGRDIMVQQ 856

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +      P +     + G GLNL    NI+V    WW+       +E     R  + G  
Sbjct: 857 FQAPDGAPAMVLSLKAGGTGLNLTA-ANIVVHMDRWWNPA-----VENQATDRAYRIGQD 910

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + VFVY LI   T++E +   +  KS +   ++
Sbjct: 911 KNVFVYKLITAGTVEERIHDIISGKSELAAAMI 943


>gi|225022844|ref|ZP_03712036.1| hypothetical protein CORMATOL_02890 [Corynebacterium matruchotii ATCC
            33806]
 gi|224944368|gb|EEG25577.1| hypothetical protein CORMATOL_02890 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1054

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
             Y  +  +L   L+                K  Q+ N   ++  +             K+
Sbjct: 823  LYTAYVNDLTTQLEQAEGIGRRGLVLASLTKIKQICNHPAHFLGDGSPMLRGNHHRSGKV 882

Query: 57   KALEVIIE--KANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
            + L  I+E  + +   +++   + +              +       G +       +Q+
Sbjct: 883  EELMQIVENARDHGEKVLIFTQYKAFGDMLTPYLSDYYGQKIPFLHGGVSKSGRDIMVQQ 942

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +      P +     + G GLNL    NI+V    WW+       +E     R  + G  
Sbjct: 943  FQAPDGAPAMVLSLKAGGTGLNLTA-ANIVVHMDRWWNPA-----VENQATDRAYRIGQD 996

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + VFVY LI   T++E +   +  KS +   ++
Sbjct: 997  KNVFVYKLITAGTVEERIHDIISGKSELAAAMI 1029


>gi|317156769|ref|XP_001825991.2| DNA repair protein Rhp26/Rad26 [Aspergillus oryzae RIB40]
          Length = 1192

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%)

Query: 6   KFQRELYCDLQGENIEAF------NSASKTVKCLQLANGA------VYYDEEKHWKEVHD 53
           K QR+ Y    G                      ++ N        +   +  +      
Sbjct: 677 KLQRQAYKSFLGSEEMQSILRGRRQVLYGVDILRKICNHPDLQSHKLTSHKAGYGNPDKS 736

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   K      ++       L               ++         +   
Sbjct: 737 GKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQSM 796

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N   + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 797 VDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 850

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 851 GQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 892


>gi|110639993|ref|YP_680203.1| SNF2 family DNA/RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282674|gb|ABG60860.1| superfamily II DNA/RNA helicase, SNF2 family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 977

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 22/213 (10%)

Query: 2   KQYHKFQ---RELYCD-LQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEK 55
           ++Y K +   R L  + +  + +            K  Q+AN     ++         E 
Sbjct: 756 QEYEKTKSNYRNLILESIDEKGLAGSQILLLQGLTKLRQIANHPSLVEDTFEGTSGKMED 815

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNE 106
           +  +     +     I+V   F   L            + A+  G+T D+     +  NE
Sbjct: 816 VNYMLDNALEL-GHKILVFSQFVKHLHLYAKLLDKAGIKYAYLDGQTRDRQAEVERFQNE 874

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +      + G GLNL    + +     WW+       +E   V R  + G K  VF
Sbjct: 875 EGIRVFLISLKAGGLGLNLTA-ADYVFLLDPWWNPA-----VEAQAVDRAYRIGQKNTVF 928

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y  I +NT++E +L   + K  + + L+++ +
Sbjct: 929 TYKFITKNTVEEKILNLQKNKLKLANDLISSEE 961


>gi|319942795|ref|ZP_08017097.1| hypothetical protein HMPREF9464_02316 [Sutterella wadsworthensis
            3_1_45B]
 gi|319803605|gb|EFW00561.1| hypothetical protein HMPREF9464_02316 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1304

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL 81
                  +   Q++N    + +E   K     K +AL  ++   + +    +V   F    
Sbjct: 1100 QILRMILNLKQISNSPSQFQKEFVDKP-DSGKAEALLELLRRCRQSGRKALVFTQFREMG 1158

Query: 82   ARLQKAF-----------PQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGG 129
             RL +               G    K    +    N     +      + G GLNL    
Sbjct: 1159 ERLVRWIEDATGRKPEFLHGGVPAAKRMEMVDAFQNNPDSEIFILSLKAGGTGLNLTA-A 1217

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++ + LWW+       +E     R  + G +R V VY  I   T +E V + L+ K  
Sbjct: 1218 SAVIHYDLWWNPA-----VEDQASDRAWRIGQRRDVVVYRFITAGTFEEKVNEMLKKKRE 1272

Query: 190  IQDLLLN 196
            + DL + 
Sbjct: 1273 LADLAVG 1279


>gi|88602942|ref|YP_503120.1| SNF2-like protein [Methanospirillum hungatei JF-1]
 gi|88188404|gb|ABD41401.1| SNF2-related protein [Methanospirillum hungatei JF-1]
          Length = 1048

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 22/209 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y     ++  +L      A      +   +  Q+ N       +K  K     K+  L 
Sbjct: 815  LYQAVVLDMAKNLDKVEGIARKGAILAAITRLKQICNHPGRVGRDKTIKAERSGKVSRLL 874

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG 107
             +IE+  +     ++   + +    L     +                K    I+E+   
Sbjct: 875  EMIEEITSEGDSALIFSQYATFAEELAGMIEKQGDTPVLLLTGSTPRKKREQMIEEFQAS 934

Query: 108  KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+       + G GLNL      +     WW+       +E     R  + G KR V 
Sbjct: 935  TTPIIFVISLKAGGTGLNLTK-ATHVFHVDRWWNPA-----VEDQATDRTYRIGQKRNVQ 988

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+ +I   T++E +    + K T+   +L
Sbjct: 989  VHLMITAGTLEERIDLINQEKRTLAKEVL 1017


>gi|218289771|ref|ZP_03493971.1| Non-specific serine/threonine protein kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240062|gb|EED07247.1| Non-specific serine/threonine protein kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 949

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 26/219 (11%)

Query: 3   QYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     +++  +              +  ++  Q+ +                 K+++L
Sbjct: 714 MYQALVDQMFAQIARGPSAMARRGAILTTLLRLKQVCDHPALIS-GGRPLAKRSGKLRSL 772

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNE 106
              +          +V   F      L                 G +       ++++  
Sbjct: 773 LDRLRVVVDGGEAALVFTQFREMGEMLCAAVEDELGFRPAFLHGGMSAKARGEIVEQYQA 832

Query: 107 GK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           G+   P+L     + G GLNL    N +  +  WW+       +E     R  + G  R 
Sbjct: 833 GRMESPVLILSLRAGGVGLNLTR-ANHVFHYDRWWNPA-----VEDQATDRAYRIGQLRG 886

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V V+ +I   T++E + + LR K  + D +++ + ++ +
Sbjct: 887 VEVHKMICVGTLEERIDEMLRAKRALSD-VVSRVSEDWV 924


>gi|281492645|ref|YP_003354625.1| SWF/SNF family DNA/RNA helicase [Lactococcus lactis subsp. lactis
            KF147]
 gi|281376309|gb|ADA65800.1| DNA/RNA helicase, SWF/SNF family [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1034

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 876

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 877  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 936

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 937  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 990

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +++    K  +   +L  
Sbjct: 991  TKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|229490063|ref|ZP_04383916.1| SNF2 family domain protein [Rhodococcus erythropolis SK121]
 gi|229323164|gb|EEN88932.1| SNF2 family domain protein [Rhodococcus erythropolis SK121]
          Length = 938

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     E+   ++G           S   K  Q+ N   ++  +        +    K+
Sbjct: 704 LYRAVVDEMMAQIKGTEGMKRKGAVLSALTKLKQVCNHPAHFLRDGSPVMRRGQHRSGKL 763

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
             +E I+E    +   +++   F      +                 G +       ++ 
Sbjct: 764 GLVEDIVESVTADDEKVLLFTQFREFGELVVPYLADRFTTEVPFLHGGVSKAGRDAMVEA 823

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  EG  P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 824 FQGEGGPPIMVLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRVFRIGQR 877

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + V V  ++   T++E +   + +KS + +L + 
Sbjct: 878 KNVQVRKMVCVGTLEERIDTMIASKSELAELAVG 911


>gi|325279022|ref|YP_004251564.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
 gi|324310831|gb|ADY31384.1| SNF2-related protein [Odoribacter splanchnicus DSM 20712]
          Length = 994

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + Q  +   +  E                 ++  Q+AN        +   E +  K
Sbjct: 776 KVYEEEQSRVRNYILSERENQGELRSDFMVLKALIRLRQIANHPRLV---ETGYEGNSGK 832

Query: 56  IKALEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEW 104
              +  ++ +   +   ++V   F   L            + A   G T D++       
Sbjct: 833 FSEVFRMLGEVIASGHKVLVFSSFVKYLKMVAEETMVRGWKYAMLTGLTADREQTIRHFQ 892

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  +      + G GLNL    + +     WW++       E   V+R  + G KRA
Sbjct: 893 ADPECRIFLISLKAGGVGLNLTE-ADYVFILDPWWNVAA-----ENQAVSRAHRIGQKRA 946

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VFVY  I   T++E +L     K  + D ++ A
Sbjct: 947 VFVYRFITAGTLEEKILAIQERKQRLADSVITA 979


>gi|299822681|ref|ZP_07054567.1| Snf2 family helicase [Listeria grayi DSM 20601]
 gi|299816210|gb|EFI83448.1| Snf2 family helicase [Listeria grayi DSM 20601]
          Length = 1063

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIV 73
            Q +        +   +  Q+      + +     +    K+  L   I+  + N   +++
Sbjct: 856  QDDETNRMKLLAGLTRLRQICCDPTLFVDGY---QGGSGKLLQLLDTIQTARENGKRMLI 912

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
               F S L                        +    +  +NEG   +      + G GL
Sbjct: 913  FSQFTSMLGIIQSELKKIGMEYFYMDGQTPSKERVNLVNAFNEGGKDIFLISLKAGGTGL 972

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G + ++ + LWW+       +E    +R  + G K  V V  ++A+ TI+E +   
Sbjct: 973  NLT-GADTVILYDLWWNPA-----VEEQAASRAHRIGQKNVVQVIRMVAKGTIEERIFDL 1026

Query: 184  LRTKSTIQDLLLNALKK 200
             + K  + D ++   +K
Sbjct: 1027 QKKKQALIDDIIQPGEK 1043


>gi|15674024|ref|NP_268199.1| SWI/SNF family helicase [Lactococcus lactis subsp. lactis Il1403]
 gi|12725092|gb|AAK06140.1|AE006434_2 SWI/SNF family helicase [Lactococcus lactis subsp. lactis Il1403]
          Length = 1034

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 876

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 877  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 936

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 937  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 990

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +++    K  +   +L  
Sbjct: 991  TKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|224543399|ref|ZP_03683938.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523686|gb|EEF92791.1| hypothetical protein CATMIT_02600 [Catenibacterium mitsuokai DSM
           15897]
          Length = 856

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 5   HKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++     L+ E +E          +  Q+ N    +  + ++      K   L+ + 
Sbjct: 632 KEVEKAEDLILESEGMERRGIVLGLLTRLKQICNHPDQFIHDTNFNPKDSGKYAMLKKLC 691

Query: 64  --EKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN--EGK 108
                    ++V   +                +       G    K    ++++N  +  
Sbjct: 692 ETIYEKRERVLVFTQYKEMCEPLSDYLESIFHKKGYIIHGGIPAKKRTEIVEKFNNEDEY 751

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P +     + G GLNL    N ++ F  WW+       +E     R  + G  + VFV+
Sbjct: 752 VPYIVLSLKAAGTGLNLTA-ANHVIHFDRWWNPA-----VENQASDRAYRIGQTKEVFVH 805

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            L++  TI+E + Q + +K  + + +L   +++ I
Sbjct: 806 KLVSNGTIEEKINQIIESKQELAESILATGQEKWI 840


>gi|326407578|gb|ADZ64649.1| DNA/RNA helicase, SWF/SNF family [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1034

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 820  ELMQKQVLEMDSAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 876

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 877  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 936

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 937  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 990

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +++    K  +   +L  
Sbjct: 991  TKGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|213408333|ref|XP_002174937.1| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces japonicus
            yFS275]
 gi|212002984|gb|EEB08644.1| ATP-dependent DNA helicase Snf22 [Schizosaccharomyces japonicus
            yFS275]
          Length = 1489

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 33/226 (14%)

Query: 1    MKQYHKFQRELYCDLQGEN--IEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHD---- 53
            ++ Y + ++     +                 ++  ++ N    ++E +   +       
Sbjct: 923  LRLYQQMKKHGILFVADGEKGRTGMKGLQNTVMQLKKICNHPFVFEEVEQAIDPEGTNYD 982

Query: 54   ------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                   K + L+ ++ K        ++ +     ++ ++                   +
Sbjct: 983  LLWRAAGKFELLDRVLPKLFRTGHRTLIFFQMTQIMSIMEDYLRYRNWKYLRLDGSTKAE 1042

Query: 96   KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + ++N+    I +      + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1043 DRSALLADFNDRNSDIYVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 1096

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  + V +  LI   +I+E +L R + K  +   ++ A K
Sbjct: 1097 DRAHRIGQTKEVRILRLITDKSIEENILARAQYKLDLDGKVIQAGK 1142


>gi|254454608|ref|ZP_05068045.1| SWI/SNF family helicase [Octadecabacter antarcticus 238]
 gi|198269014|gb|EDY93284.1| SWI/SNF family helicase [Octadecabacter antarcticus 238]
          Length = 702

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 3   QYHKFQRELYC-------DLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWK 49
           QY + +RE           +  +  EA N               Q+ N   ++ + K   
Sbjct: 467 QYCQLEREQAALYQTTMNQIMEKIEEADNIERRGLVLKLITALKQICNHPSHFLKHKTLD 526

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDK 96
                K   L  +I+    N   +++   +      LQK               G T   
Sbjct: 527 AEKSGKTAMLMELIDNIAANEEKLLIFTQYTQMGNLLQKLITEKFGLEPLFLHGGLTRQS 586

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++  +  +  L     + G GLNL      +V F LWW+       +E     R
Sbjct: 587 RDEIVDDFQTKPYVKTLILSLKAGGTGLNLTA-AQNVVHFDLWWNPA-----VEAQATDR 640

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G    V V+ LI + T +E +   L+ K  + D+ ++  +K
Sbjct: 641 AYRIGQTSNVMVHRLITRGTFEEKINTMLKDKRELADMAISKGEK 685


>gi|124007753|ref|ZP_01692456.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
 gi|123986875|gb|EAY26647.1| helicase, SNF2 family [Microscilla marina ATCC 23134]
          Length = 1207

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y      +  +L G+  E                 Q+ N   +Y +  H       K +
Sbjct: 978  LYQNVVDMIMRELNGKQGEEGKTRKGLIFQLMNALKQICNHPSHYLKHAHLDPGQSGKTQ 1037

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEW 104
             L  +++    N    ++   +                        G +  K    ++++
Sbjct: 1038 LLLSLLDNIYENGEKTLIFTQYREMGDLLLPLLEQRYHNTPLWLHGGVSRKKRDQMVEDF 1097

Query: 105  NE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                 +  +     + G GLNL    + ++ + LWW+       +E     R  + G + 
Sbjct: 1098 QNKPHVKTMLLSLKAGGTGLNLTK-ASNVIHYDLWWNPA-----VENQATDRAYRIGQQN 1151

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V VY +I Q T +E +   ++TK  + DL ++
Sbjct: 1152 NVMVYRMITQGTFEEKINAMIQTKKELADLTVS 1184


>gi|84495493|ref|ZP_00994612.1| SNF2-like [Janibacter sp. HTCC2649]
 gi|84384986|gb|EAQ00866.1| SNF2-like [Janibacter sp. HTCC2649]
          Length = 1099

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            ++ L   +   +              Q+A      D E +       K++AL   + +  
Sbjct: 887  RQRLLGLIDDLDGNRIAILRALTVLRQMALDPSLVDAEAYGGVAPSAKVEALVEQVAELA 946

Query: 66   ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            A     +V   F S L+ ++               +       ++E+ EG+ P+      
Sbjct: 947  AEGHRALVFSQFTSFLSIVRDRLEEEGIAYAYLDGSTRNRADVVKEFREGEAPVFLISLK 1006

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GL L    + +     WW+        E   + R  + G  ++V VY L++ +TI+
Sbjct: 1007 AGGFGLTLTE-ADYVFVLDPWWNPAA-----ENQAIDRAHRIGQTKSVNVYRLVSTDTIE 1060

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E V+     K  +   +++ 
Sbjct: 1061 EKVVALQDKKRDLFARVVDD 1080


>gi|109898913|ref|YP_662168.1| SNF2-related [Pseudoalteromonas atlantica T6c]
 gi|109701194|gb|ABG41114.1| SNF2-related protein [Pseudoalteromonas atlantica T6c]
          Length = 1437

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 27/215 (12%)

Query: 4    YHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +     ++     +A          ++ VK  Q          E     +   K+ 
Sbjct: 1215 YEALRLNAIDNISQSGQQANAGEQRIRMLAELVKLRQACCNPKLVMAETT---IPSAKLA 1271

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
            AL+ ++E+   N    ++   F   L  +++                   +   ++  + 
Sbjct: 1272 ALDELLEELKLNNHKALIFSQFVGHLQLIKQHIEAKGFSYQYLDGSTPQKQRQASVNAFQ 1331

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL    + ++    WW+       +E     R  + G  R V
Sbjct: 1332 RGEGDIFLISLKAGGSGLNLTA-ADYVIHMDPWWNPA-----VEEQASDRAHRIGQLRPV 1385

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +Y L+ +NTI+E ++   + K  + D LL   + 
Sbjct: 1386 TIYRLVTRNTIEEKIVSLHQHKRDLADTLLEGNEA 1420


>gi|83774735|dbj|BAE64858.1| unnamed protein product [Aspergillus oryzae]
          Length = 977

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 32/222 (14%)

Query: 6   KFQRELYCDLQGENIEAF------NSASKTVKCLQLANGA------VYYDEEKHWKEVHD 53
           K QR+ Y    G                      ++ N        +   +  +      
Sbjct: 568 KLQRQAYKSFLGSEEMQSILRGRRQVLYGVDILRKICNHPDLQSHKLTSHKAGYGNPDKS 627

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   K      ++       L               ++         +   
Sbjct: 628 GKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILQKFVESLSGFNYRRMDGTTPIAHRQSM 687

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N   + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 688 VDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 741

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 742 GQKRDVTVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 783


>gi|320587466|gb|EFW99946.1| DNA repair protein rhp26 [Grosmannia clavigera kw1407]
          Length = 1202

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 33/223 (14%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------H 52
           + Y  F R  E+   L      A  S        ++ N     + +   KE         
Sbjct: 687 QAYELFLRSDEMSAILNR----ARQSLYGIDILRKICNHPDLAEPQLKHKEGYNWGSPSK 742

Query: 53  DEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK-DPC 99
             K++ ++ ++   K      ++             F   L  +Q     G+T  K    
Sbjct: 743 SGKMQVVKALLQMWKRFGHKTLLFCQGTQMLDILEIFTQSLGDIQYLRMDGKTPIKDRQT 802

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N + ++ +        G G+NL  G + ++ F   W+        +     R  +
Sbjct: 803 LVDRFNNDPQLNVFLLTTKVGGLGVNLT-GADRVIIFDPDWNPST-----DVQARERAWR 856

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 857 LGQKRQVTIYRLMTAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 899


>gi|260907213|ref|ZP_05915535.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Brevibacterium
            linens BL2]
          Length = 1132

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 18/206 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKALEVI 62
             K +++L   +   +   F           LA      DE+               L+ I
Sbjct: 919  QKERKKLLGLINDMDRNRFAIFRSLTLLRMLAIDPYLIDEKYEAIGSSKLSALFSHLDDI 978

Query: 63   IEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            I +      I+   F S L+R+                +       I ++  G+ P+   
Sbjct: 979  IAE--GHRTIIFSQFTSFLSRVGEQLDHRNINYCYLDGSTRNRGAVIDDFRAGEAPIFLI 1036

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GL L    + +     WW+       +E   V R  + G  + V VY ++++ 
Sbjct: 1037 SLKAGGFGLTLTE-ADYVFLLDPWWNPA-----VEAQAVDRAHRIGQTKNVMVYRMVSEK 1090

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKK 200
            TI+E VL     K+ + D L+N  + 
Sbjct: 1091 TIEEKVLALQERKAQLFDSLVNEGEG 1116


>gi|91214800|ref|ZP_01251773.1| DEAD/DEAH box helicase-like protein [Psychroflexus torquis ATCC
            700755]
 gi|91187227|gb|EAS73597.1| DEAD/DEAH box helicase-like protein [Psychroflexus torquis ATCC
            700755]
          Length = 1216

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 81/215 (37%), Gaps = 21/215 (9%)

Query: 2    KQYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +F+    +++   ++ E +            K  Q+ N     D+EK +     + 
Sbjct: 994  KVYDQFKDYFRQQILDQIENEGVNRSQIYILQGLTKLRQICNSTALADKEKDYGNDSAKL 1053

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
             + +  + +K     ++V   F   L           ++  +  G+T  ++       N 
Sbjct: 1054 DELVRHLKQKVAKHKVLVFSQFVGMLQLVKERLDEEDIKFEYLDGQTKKREEKVNNFQNN 1113

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K+ +      + G GLNL    + +     WW+     Q I+R       + G  + V 
Sbjct: 1114 PKVRVFLISLKAGGTGLNLTE-ADYVYLIDPWWNPAVESQAIDRC-----YRIGQDKKVM 1167

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Y +I +++I+E +L     K +I   ++   + +
Sbjct: 1168 AYRMICKDSIEEKILSLQDKKKSIAADVIRIDEGK 1202


>gi|167535609|ref|XP_001749478.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772106|gb|EDQ85763.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1903

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 31/228 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK------ 55
            + Y +   + Y  L        +  +  ++  + AN    +D+ +   E HD        
Sbjct: 881  RFYKELLAKNYSFLTATTQGVSSLNNLLMQLRKCANHPYLFDDAEPEVEDHDAMVKLLVG 940

Query: 56   ------IKALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DPC 99
                  +  + +   K     +++       L         +G    +            
Sbjct: 941  ASGKTLLLDMMLRKLKEQGHRVLIFSQMTRMLDILQDIMMYRGYHCCRLDGNTDILTRQE 1000

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E++       +      + G G+NL    + ++ F   W+        +   + R  
Sbjct: 1001 QIDEFSRPDSDAFVFLLSTRAGGLGINLTT-ADTIIIFDSDWNP-----HADLQALARAH 1054

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKETIH 204
            + G K  V VY  ++ NT++E +L+R R K  +   + ++ LKK  + 
Sbjct: 1055 RIGQKNLVMVYRFVSVNTVEERILRRAREKLRLDQAVRMDKLKKSELD 1102


>gi|289168337|ref|YP_003446606.1| HepA, superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            mitis B6]
 gi|288907904|emb|CBJ22744.1| HepA, superfamily II DNA/RNA helicases, SNF2 family [Streptococcus
            mitis B6]
          Length = 1032

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             +  R+    +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQM-RDRLAQVSDQEFQRSRVEILSGLMRLRQICDTPGLFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTRGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|323357442|ref|YP_004223838.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
            testaceum StLB037]
 gi|323273813|dbj|BAJ73958.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
            testaceum StLB037]
          Length = 1063

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 24/215 (11%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +     ++ L   L      +F          QLA      DE     E    K+ 
Sbjct: 840  KLYDRRFHRERQRLLGLLDDAEGNSFAIFRSLTMLRQLALDPALVDEG----EAPSAKLD 895

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNEG 107
            ALE ++ +A      ++V   F   L   ++              T       I  + +G
Sbjct: 896  ALEELLVEAAAEGHRVLVLSQFTRFLRAARQRCTDAGLASGYLDGTTTNRQAEIDRFRDG 955

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P  F    + G GLNL    + +V    WW+       +E   + R  + G  R V V
Sbjct: 956  DDPAFFVSLKAGGVGLNL-VEADYVVLLDPWWNPA-----VEDQAIDRAHRIGQTRPVIV 1009

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            Y L++ +T+++ V+     K+ +   +L+    E 
Sbjct: 1010 YRLVSSDTVEQKVVALREAKAELFSRVLDGGADEG 1044


>gi|187736256|ref|YP_001878368.1| Non-specific serine/threonine protein kinase [Akkermansia muciniphila
            ATCC BAA-835]
 gi|187426308|gb|ACD05587.1| Non-specific serine/threonine protein kinase [Akkermansia muciniphila
            ATCC BAA-835]
          Length = 1171

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 21/211 (9%)

Query: 2    KQYH-KFQR--ELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y  + +R  +    L  +     N        ++  Q+       D +   ++     
Sbjct: 943  QLYKAELRRIQQALLGLDSDESVKKNSFAILQGLMRLRQICCHPGLVDPKYAKEDSAKMT 1002

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNE 106
                 +   +     ++V   F S L  ++           +  G+T D+     +    
Sbjct: 1003 ALFYLLDQLREEGHKVLVFSQFVSMLEIIKNRLEAENRPLNYLTGQTKDRRGEIEKFQTT 1062

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    + +V +  WW+       +E   + R  + G K  V 
Sbjct: 1063 KDPSVFLLSLKAGGAGLNLTS-ASYVVLYDPWWNPA-----VESQAIDRTHRIGQKNKVI 1116

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             Y L+ +++++E +      K+ +   +L  
Sbjct: 1117 AYRLLTKDSVEEKIRILQHQKNQLVANVLGD 1147


>gi|296331256|ref|ZP_06873728.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305676243|ref|YP_003867915.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151371|gb|EFG92248.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305414487|gb|ADM39606.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 922

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E   + +     K++ 
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEDQTELLAGRSVKLEK 753

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +A     ++   +      ++           +      +  +    ++++ 
Sbjct: 754 LLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 814 KKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 868 HVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|313608461|gb|EFR84385.1| SNF2 family helicase [Listeria monocytogenes FSL F2-208]
          Length = 966

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 21/204 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 745 EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 801

Query: 65  --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
             + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 802 TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 861

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 862 LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 915

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           + TI+E +    + K  + D L+ 
Sbjct: 916 KGTIEERIFDLQKKKQALVDELIQ 939


>gi|307705331|ref|ZP_07642193.1| SNF2 family N-terminal domain protein [Streptococcus mitis SK597]
 gi|307621118|gb|EFO00193.1| SNF2 family N-terminal domain protein [Streptococcus mitis SK597]
          Length = 1048

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 6    KFQR--ELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + +R  E+      + I+       +   +  Q+ N    + E+         K+ +L  
Sbjct: 831  QLRRMQEMVAGASADEIKRHKIEILAGLTRLRQICNTPALFLEDYK---GDSGKMDSLFE 887

Query: 62   IIE--KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +++  +   +  ++   F S L                       DK    +  +N+G+ 
Sbjct: 888  LLDTIREKGSRPLIFSQFTSMLDLIEQELEKKEMSHFKITGQTPSDKRQEMVNLFNQGEK 947

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL  G + ++   LWW+            ++R  + G  + V VY 
Sbjct: 948  DCFLISLKAGGTGLNLT-GADTVILCDLWWNPAVEM-----QAISRSHRLGQTKQVDVYR 1001

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI   TI+E + +   +K  + + +L   +  
Sbjct: 1002 LITLGTIEEKIQELQESKKELFNTVLEGQESR 1033


>gi|312277649|gb|ADQ62306.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus ND03]
          Length = 1031

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          K+ +L  ++
Sbjct: 815  QQMQQGLISASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDLL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G K+ V V+ LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKQNVEVFRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|46447008|ref|YP_008373.1| hypothetical protein pc1374 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400649|emb|CAF24098.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1161

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 82/212 (38%), Gaps = 21/212 (9%)

Query: 2    KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y    RE    L   +G      +  +   +  Q+      + +++  +     K + 
Sbjct: 940  RSYAASAREELSQLVKKEGFERVQIHVLATLTRLKQICCHPAIFAKDRP-ENGDSSKYEM 998

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWN-EG 107
            L  +++    +    ++   +   L  +++   +     +            ++++N + 
Sbjct: 999  LLELLQTLMESKHKTVIFSQYTRMLNIMREDLEKQGIRFEYLDGSSKNRLSIVKKFNEDP 1058

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             IP+      + G GLNL  G + ++ + +WW+       +E     R  + G K +V  
Sbjct: 1059 NIPIFLVSLKAGGSGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRLGQKNSVSS 1112

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y LI  NTI+E +L+    K  +   +++  +
Sbjct: 1113 YKLITLNTIEEKILELHNRKKGLVKEVVSRDE 1144


>gi|302892777|ref|XP_003045270.1| transcription-coupled repair protein CSB/RAD26 [Nectria
           haematococca mpVI 77-13-4]
 gi|256726195|gb|EEU39557.1| transcription-coupled repair protein CSB/RAD26 [Nectria
           haematococca mpVI 77-13-4]
          Length = 1164

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y  F +    ++         S        ++ N     D+    K  +         
Sbjct: 675 KAYETFLKS--DEVSSILSRTRQSLYGIDILRKICNHPDLLDKSLGSKPGYDFGNPKLSA 732

Query: 55  KIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
           K++  + +++K    N    ++       L  ++K   +             +D+    I
Sbjct: 733 KLQLTKDLLQKVMIPNGHKTLLFSQGKQMLNIIEKCIRECDISYVRMDGETPVDQRQPMI 792

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N +  I +      + G G NL  G + ++ F   W+        +     R  + G
Sbjct: 793 DKFNEDPNIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPST-----DLQARERAWRLG 846

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            K+ V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 847 QKKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 887


>gi|226307453|ref|YP_002767413.1| helicase [Rhodococcus erythropolis PR4]
 gi|226186570|dbj|BAH34674.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 938

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y     E+   ++G           S   K  Q+ N   ++  +        +    K+
Sbjct: 704 LYRAVVDEMMAQIKGTEGMKRKGAVLSALTKLKQVCNHPAHFLRDGSPVMRRGQHRSGKL 763

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
             +E I+E    +   +++   F      +                 G +       ++ 
Sbjct: 764 GLVEDIVESVTADDEKVLLFTQFREFGELVVPYLADRFTTEVPFLHGGVSKAGRDAMVEA 823

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +      P++     + G GLNL    N +V    WW+       +E     R  + G +
Sbjct: 824 FQGADGPPIMVLSLKAGGTGLNLTA-ANHVVHLDRWWNPA-----VENQATDRVFRIGQR 877

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + V V  ++   T++E +   + +KS + +L + 
Sbjct: 878 KNVQVRKMVCVGTLEERIDTMIASKSELAELAVG 911


>gi|320093666|ref|ZP_08025543.1| hypothetical protein HMPREF9005_0155 [Actinomyces sp. oral taxon 178
            str. F0338]
 gi|319979382|gb|EFW10867.1| hypothetical protein HMPREF9005_0155 [Actinomyces sp. oral taxon 178
            str. F0338]
          Length = 1048

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 18/206 (8%)

Query: 3    QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y +     +      ++       +  +   +  QLA      D           +   
Sbjct: 831  IYEQHLTRERARALSLMEDFPRNRMDVLASITRLRQLALDPALVDGAYAHVGSAKTEYLV 890

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIP 110
             +++         +V   F S LAR+++                      I+ +  G   
Sbjct: 891  GQLVQIVPRGHQALVFSQFTSFLARIRRALERRGITVAQLDGATRGRARVIERFRSGAAS 950

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GL L    + +     WW+        E   V R  + G  + V VY L
Sbjct: 951  VFLISLKAGGTGLTLTE-ADYVYVMDPWWNPAA-----EAQAVDRAHRIGQSKKVNVYRL 1004

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +A +TI+  V++    K  +   +++
Sbjct: 1005 VADDTIEAKVVELQDRKRRLVSKVVD 1030


>gi|55822225|ref|YP_140666.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738210|gb|AAV61851.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 1031

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          K+ +L  ++
Sbjct: 815  QQMQQGLISASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDLL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G K+ V V+ LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKQNVEVFRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|254832046|ref|ZP_05236701.1| hypothetical protein Lmon1_11855 [Listeria monocytogenes 10403S]
          Length = 1072

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E + +  + K  + D L+ 
Sbjct: 1022 KGTIEERIFELQKKKQALVDELIQ 1045


>gi|315038431|ref|YP_004031999.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
 gi|312276564|gb|ADQ59204.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1112]
          Length = 1180

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 34/226 (15%)

Query: 3    QYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++        F   ++  K  ++        +  H      +K+K
Sbjct: 959  LYHLQMNKIIAQLNGQDDDDFKKSRFQILAQITKLREICCDPHLLYDNYH---GKSDKLK 1015

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
                +I+    N   I++   F S L                       +K    IQ +N
Sbjct: 1016 TTIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1075

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++       E     R  + G K +
Sbjct: 1076 SLKQPGVFLISLKAGGTGINLTS-ADVVIHYDPWWNIAA-----ENQATDRAHRIGQKNS 1129

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-------ALKKETI 203
            V +Y ++ Q+T++E +++  + K+ +   +LN       A+ +E +
Sbjct: 1130 VKIYKMVTQDTVEERIIKLQQKKAELAQAILNNKDMANAAMNRENL 1175


>gi|307704453|ref|ZP_07641363.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK597]
 gi|307621973|gb|EFO01000.1| bacterial SNF2 helicase associated family protein [Streptococcus
            mitis SK597]
          Length = 1032

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 5    HKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + +  L    +Q          S  ++  Q+ +    + E+         K+ +L  ++
Sbjct: 813  QQMRDRLAQVSVQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDLL 869

Query: 64   EK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
             +       +++   F   L                        +     + +N+G+   
Sbjct: 870  VQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERDA 929

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L+
Sbjct: 930  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRLV 983

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + TI+E + +    K  +   +L+  +   
Sbjct: 984  TKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|149013295|ref|ZP_01834053.1| Snf2 family protein, putative [Streptococcus pneumoniae SP19-BS75]
 gi|182684567|ref|YP_001836314.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|303253977|ref|ZP_07340097.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|303258546|ref|ZP_07344526.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262636|ref|ZP_07348576.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263575|ref|ZP_07349497.1| snf2 family protein [Streptococcus pneumoniae BS397]
 gi|303266981|ref|ZP_07352856.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|303269746|ref|ZP_07355498.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|147762960|gb|EDK69906.1| Snf2 family protein, putative [Streptococcus pneumoniae SP19-BS75]
 gi|182629901|gb|ACB90849.1| snf2 family protein [Streptococcus pneumoniae CGSP14]
 gi|301802325|emb|CBW35079.1| SNF2 protein [Streptococcus pneumoniae INV200]
 gi|302599065|gb|EFL66091.1| snf2 family protein [Streptococcus pneumoniae BS455]
 gi|302636192|gb|EFL66687.1| snf2 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302640047|gb|EFL70502.1| snf2 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302640716|gb|EFL71111.1| snf2 family protein [Streptococcus pneumoniae BS458]
 gi|302643498|gb|EFL73770.1| snf2 family protein [Streptococcus pneumoniae BS457]
 gi|302646613|gb|EFL76838.1| snf2 family protein [Streptococcus pneumoniae BS397]
          Length = 1048

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNS 79
                 +   +  Q+ N    + E+         K+ +L  +++  +   +  ++   F S
Sbjct: 851  KIEILAGLTRLRQICNTPALFLEDYK---GDSGKMDSLFELLDTIREKGSRPLIFSQFTS 907

Query: 80   DLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             L                       DK    +  +N+G+         + G GLNL  G 
Sbjct: 908  MLDLIEQELEKKEMSHFKITGQTPSDKRQEMVNLFNQGEKDCFLISLKAGGTGLNLT-GA 966

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++   LWW+            + R  + G  + V VY LI   TI+E + +   +K  
Sbjct: 967  DTVILCDLWWNPAVEM-----QAIGRSHRLGQTKQVDVYRLITLGTIEEKIQELQESKKE 1021

Query: 190  IQDLLLNALKKE 201
            + + +L   +  
Sbjct: 1022 LFNTVLEGQESR 1033


>gi|47096999|ref|ZP_00234573.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|254898188|ref|ZP_05258112.1| hypothetical protein LmonJ_00195 [Listeria monocytogenes J0161]
 gi|254912319|ref|ZP_05262331.1| helicase [Listeria monocytogenes J2818]
 gi|254936646|ref|ZP_05268343.1| helicase [Listeria monocytogenes F6900]
 gi|47014621|gb|EAL05580.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
 gi|258609243|gb|EEW21851.1| helicase [Listeria monocytogenes F6900]
 gi|293590301|gb|EFF98635.1| helicase [Listeria monocytogenes J2818]
          Length = 1072

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E + +  + K  + D L+ 
Sbjct: 1022 KGTIEERIFELQKKKQALVDELIQ 1045


>gi|313890879|ref|ZP_07824503.1| SNF2 family N-terminal domain protein [Streptococcus pseudoporcinus
            SPIN 20026]
 gi|313120777|gb|EFR43892.1| SNF2 family N-terminal domain protein [Streptococcus pseudoporcinus
            SPIN 20026]
          Length = 1031

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 25/211 (11%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q E   +    +I        S   +  Q+ +    + E     +    K+++L  +
Sbjct: 815  RQMQ-ERIQNASDSDINRQKIEILSGITRLRQICDTPSLFMEY----QGESGKLESLRTL 869

Query: 63   I--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K N    ++   F   L  ++                   D+     + +N G   
Sbjct: 870  LLQVKENGHRALIFSQFRGMLEIVEQELSSLGLGSYKITGSTPADERQEMTRAFNNGSKD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + +V   LWW+            ++R  + G K  V VY L
Sbjct: 930  AFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRIGQKDNVEVYRL 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E +L     K  +   +L+  +  
Sbjct: 984  ITRGTIEEKILTLQENKKNLVTTVLDGNESR 1014


>gi|258577009|ref|XP_002542686.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
 gi|237902952|gb|EEP77353.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
          Length = 1203

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 32  CLQLANGA--------VYYDEEKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDL 81
             ++ N              +  +   V   K++ ++ +  + K      ++       L
Sbjct: 715 LRKICNHPDLPEHRTLSQKSDYNYGSGVKSGKMQVVKSLIELWKETGHKTLLFAQHRIML 774

Query: 82  ARLQKAF----------PQGRTLDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
             L+K              G T  K     + E+N +  I +        G G+NL  G 
Sbjct: 775 DILEKFMKSLPGFNYRRMDGNTPIKIRQSIVDEFNTDPDIHVFLLTTKVGGLGVNLT-GA 833

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ +   W+        +     R  + G KR V +Y L+   TI+E +  R   K  
Sbjct: 834 DRVIIYDPDWNPST-----DLQARERAWRLGQKREVTIYRLMTAGTIEEKIYHRQIFKQF 888

Query: 190 IQDLLLNALKKE 201
           + + +L   K+ 
Sbjct: 889 LTNKILKDPKQR 900


>gi|311070141|ref|YP_003975064.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
 gi|310870658|gb|ADP34133.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           atrophaeus 1942]
          Length = 924

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 77/212 (36%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E   + +     K++ 
Sbjct: 694 LYEQLVKDTFEHMSSLTGMQRKALILSMLGRLKQICDHPALYLKEDQTELLAGRSVKLEK 753

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +      ++   +      ++           +      +       ++++ 
Sbjct: 754 LLELMTAIRDQNESCLIFTQYIQMGNMMKKLLEKTFGEPVQFLNGSLSKQDRDSLVEKFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 814 KKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L TK T+ D ++ +
Sbjct: 868 HVHKMITTGTIEEKIDMMLETKQTLNDQIIQS 899


>gi|215487691|ref|YP_002330122.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967725|ref|ZP_07781940.1| putative helicase [Escherichia coli 2362-75]
 gi|215265763|emb|CAS10170.1| predicted helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287922|gb|EFR15827.1| putative helicase [Escherichia coli 2362-75]
          Length = 1149

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y    RE    ++GE+             +   Q+ N   +Y + K        K + L
Sbjct: 922  IYASVVREGMQVIRGESDAFQRQGLVLQMIMALKQVCNHPAHYLKNKQMDAALSGKAQLL 981

Query: 60   EVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWN 105
              +++  +     +++   F      LQ                      +D    +  N
Sbjct: 982  LDLLDSIEETTEKVLIFTQFKEMGELLQSWLTARYGEQPLFLHGGLSRKKRDEQVERFQN 1041

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  +        + G GLNL    + ++ + LWW+       +E     R  + G +R V
Sbjct: 1042 DRSVRHFILSLKAGGTGLNLTA-ASQVIHYDLWWNPA-----VEAQATDRAYRIGQQRNV 1095

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V+ L+ + T +E +   +R K  + ++ + + ++
Sbjct: 1096 QVHRLLTRETFEERINDMIRNKKALAEMTVGSGEQ 1130


>gi|312438077|gb|ADQ77148.1| SNF2 domain protein [Staphylococcus aureus subsp. aureus TCH60]
          Length = 455

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      ++++I  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIITDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|282911093|ref|ZP_06318895.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324788|gb|EFB55098.1| SNF2 family protein [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 455

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 8/202 (3%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + ++    +  +   + A N AS + K LQL+NGAV Y +++  + +HD+K+  LE
Sbjct: 257 KVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAV-YTDDEDVRLIHDKKLDKLE 315

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            IIE++   PI++ Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS G
Sbjct: 316 EIIEESQGQPILLFYNFKHDKERILQRFKEATT-LEDSNYKERWNSGDIKLLIAHPASAG 374

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNLQ GG+I+V+F L W LE +Q         R  + G      ++++I  NTID+ V
Sbjct: 375 HGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHIITDNTIDQRV 429

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K   Q+ L+ A+K   
Sbjct: 430 YKALQNKELTQEELMKAIKARI 451


>gi|256850404|ref|ZP_05555832.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-1A-US]
 gi|262046447|ref|ZP_06019409.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-3A-US]
 gi|312977470|ref|ZP_07789218.1| Snf2 family protein [Lactobacillus crispatus CTV-05]
 gi|256712801|gb|EEU27794.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-1A-US]
 gi|260573318|gb|EEX29876.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            MV-3A-US]
 gi|310895901|gb|EFQ44967.1| Snf2 family protein [Lactobacillus crispatus CTV-05]
          Length = 1131

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+         F   ++  K  ++        E  H       K+ 
Sbjct: 910  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYH---GKSNKLI 966

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    N   I++   F + L                        K    +Q++N
Sbjct: 967  ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1026

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L       E+    R  + G K +
Sbjct: 1027 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAA-----EKQATDRAHRIGQKHS 1080

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1081 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1112


>gi|171687146|ref|XP_001908514.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943534|emb|CAP69187.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1197

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 33/224 (14%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------H 52
           + Y  F +  E+   L                  ++ N     +     +          
Sbjct: 695 EAYELFLKSDEMASILDRSRQS----LYGIDILRKICNHPDLLNPRLKNEPGYLWGSVEK 750

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPC 99
             K+  ++ ++   K      ++       L                       + +   
Sbjct: 751 SGKMAVVQSLLPMWKRLGHKTLLFSQGTQMLDIIEAFVQRLDDVRYLRMDGKTPIKQRQT 810

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N +  + +        G G+NL  G N ++ F   W+        +     R  +
Sbjct: 811 LVDQFNNDPSLDVFLLTTKVGGLGVNLT-GANRVIIFDPDWNPST-----DVQARERAWR 864

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G KR V +Y L+   TI+E +  R   K  + + +L   K++T
Sbjct: 865 LGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLSNKVLKDPKQQT 908


>gi|284802036|ref|YP_003413901.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284995178|ref|YP_003416946.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
 gi|284057598|gb|ADB68539.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
 gi|284060645|gb|ADB71584.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
          Length = 1072

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E + +  + K  + D L+ 
Sbjct: 1022 KGTIEERIFELQKKKQALVDELIQ 1045


>gi|16803684|ref|NP_465169.1| hypothetical protein lmo1644 [Listeria monocytogenes EGD-e]
 gi|16411080|emb|CAC99722.1| lmo1644 [Listeria monocytogenes EGD-e]
          Length = 1072

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E + +  + K  + D L+ 
Sbjct: 1022 KGTIEERIFELQKKKQALVDELIQ 1045


>gi|301059981|ref|ZP_07200855.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300445860|gb|EFK09751.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 1002

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 83/215 (38%), Gaps = 24/215 (11%)

Query: 1   MKQYHKFQ----RELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYD-EEKHWKEVHD 53
           +K Y         +L  +L+   ++I   +  S      Q+ N     +     ++    
Sbjct: 758 VKLYRDVISSRGHDLVHNLREPRKSIPYIHIFSLLNLLKQICNHPALINGNIDDYQNFQS 817

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQE 103
            K    + ++E+A  +   +++   F + +  ++K   Q  T               I+ 
Sbjct: 818 GKWDLFKELLEEALASGQKVVIYSQFLNMIDIMEKYLAQTGTNFVSLTGRTTNREKIIER 877

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N + +  +      + G G++L    ++++ +  WW+  +     E     R  + G K
Sbjct: 878 FNEDSECRVFVGSLKAGGVGIDLVA-ASVVIHYDRWWNAAK-----EDQATDRVHRIGQK 931

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V V+ L+ + T++E +   +  K  + D ++  
Sbjct: 932 KGVQVFKLVTEGTLEEKIAAIIAKKRNLMDSVVEE 966


>gi|170739234|ref|YP_001767889.1| non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
 gi|168193508|gb|ACA15455.1| Non-specific serine/threonine protein kinase [Methylobacterium sp.
            4-46]
          Length = 1120

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 32/227 (14%)

Query: 3    QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
             Y   +       R    + +G            +K  Q              K     K
Sbjct: 898  LYESIRLAMHARVRAAIAE-KGFARSRIVILDALLKLRQACCDPRLLKLAPPPKAG-SAK 955

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWN 105
            +  L+ ++E   A    ++V   F S L  ++      +T               ++ + 
Sbjct: 956  LDRLDELLESLIAEGRRVLVFSQFTSMLDLIKPRLTLAKTPCLELTGRSRDRAEVVRRFE 1015

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+ P+      + G GLNL    + ++ +  WW+       +E   + R  + G  + V
Sbjct: 1016 AGEAPVFLISLKAGGTGLNLVA-ADTVILYDPWWNPA-----VEAQAIDRAHRIGQDKPV 1069

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-------ALKKETIHV 205
            FV+ L+A  TI+E +      K  + D L +       A+  E + +
Sbjct: 1070 FVHKLVASRTIEEKMGVLKERKGALADSLFDHDGAPTSAMTAEDLDL 1116


>gi|55820334|ref|YP_138776.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736319|gb|AAV59961.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 1031

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          K+ +L  ++
Sbjct: 815  QQMQQGLISASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDLL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRQEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G K+ V V+ LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKQNVEVFRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|1763712|emb|CAB05939.1| ywqA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 867

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E+  + +     K++ 
Sbjct: 639 LYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLEK 698

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +A     ++   +      ++           +      +  +    ++++ 
Sbjct: 699 LLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQ 758

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 759 RKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 812

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 813 HVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 844


>gi|152964981|ref|YP_001360765.1| Non-specific serine/threonine protein kinase [Kineococcus
            radiotolerans SRS30216]
 gi|151359498|gb|ABS02501.1| Non-specific serine/threonine protein kinase [Kineococcus
            radiotolerans SRS30216]
          Length = 1029

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 30/222 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEK----HWKEVH 52
             Y +   +L   L  E+ +           +   +  Q+ N   +Y  +     H     
Sbjct: 791  LYRQVVDDLVRRLAEEDPDPRGPARRGLVLATLTRLKQICNHPAHYLADASGVLHRGRHR 850

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPC 99
              K++ L+ I+   +A    ++    F      L                 G        
Sbjct: 851  SGKLELLDDIVTSARAEGEKVLCFTQFAEFGHLLGPHLAERTGEPVPFLHGGVPRRARDA 910

Query: 100  TIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + E++    P ++     + G GLNL    N +V    WW+       +E     R  +
Sbjct: 911  MVAEFSSADGPGVMLLSLRAGGTGLNLTA-ANHVVHVDRWWNPA-----VEDQATDRAYR 964

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             G  R+V V  +++  T++E V   +  K  + D ++ + + 
Sbjct: 965  IGQHRSVQVRKMVSVGTVEERVDAVITRKRGLADAVVGSGEG 1006


>gi|46111317|ref|XP_382716.1| hypothetical protein FG02540.1 [Gibberella zeae PH-1]
          Length = 1163

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWK------- 49
           K Y  F       ++ + + A       S        ++ N     D+    K       
Sbjct: 675 KAYETF-------IKSDEVSAILNRRRQSLYGIDILRKICNHPDLLDKSLGKKAGYDFGN 727

Query: 50  EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
                K++  + +++K    N    ++       L  ++K   +             +D+
Sbjct: 728 PKLSAKLQLTKDLLQKVMIPNGHKTLLFSQGKQMLDIIEKCIGECGISYVRMDGETPVDR 787

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++NE   I +      + G G NL  G + ++ F   W+        +     R
Sbjct: 788 RQTMIDKFNESPDIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPST-----DLQARER 841

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G K+ V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 842 AWRLGQKKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 887


>gi|149007570|ref|ZP_01831205.1| Snf2 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147760929|gb|EDK67899.1| Snf2 family protein [Streptococcus pneumoniae SP18-BS74]
          Length = 1032

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEKANA--APIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGRHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|297625268|ref|YP_003687031.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296921033|emb|CBL55571.1| Helicase (SNF2-related protein) [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1132

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 22/210 (10%)

Query: 2    KQYH-KFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y  + Q E    L              +   +  QL+      DE      +   KI 
Sbjct: 913  RIYDRQLQAERMNTLGLLGDARHHRIEILAALTRLRQLSLAPGLVDE--KMLNIGSAKID 970

Query: 58   ALEVIIEKANA--APIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +          +V   F S L  ++                       +Q + +G
Sbjct: 971  TLVEHLRALAGENHRALVFSQFTSFLHLVRDRLTTEGIEWEYLDGRTRHRDERVQRFKDG 1030

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                      + G GL L    + +     WW+        E   + R  + G  + V V
Sbjct: 1031 NATAFLISLKAGGFGLTLTE-ADYVYVLDPWWNPAA-----ENQAIDRTHRIGQDKQVMV 1084

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y +++ NTI+E V+   + K  + D ++  
Sbjct: 1085 YRMVSTNTIEEKVVALQQRKRDLFDQVVGD 1114


>gi|229819960|ref|YP_002881486.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
 gi|229565873|gb|ACQ79724.1| Non-specific serine/threonine protein kinase [Beutenbergia cavernae
            DSM 12333]
          Length = 1118

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 2    KQYHKF---QRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y +    +R+    L    +       S   +  QLA      D           K+ 
Sbjct: 881  RVYDRHLHRERQRVLRLADDLDRNRVEVLSALTRLRQLAIDPTLVD---ADSAAPGSKLD 937

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
            AL  ++ +A      ++V   F   LA +                T  +    I+ + EG
Sbjct: 938  ALLPLLTEAAAEGHRVLVFSQFTRYLAMIGARLDAAGLAYSYLDGTTRRRDAVIRGFAEG 997

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +  V    WW+    +Q ++R       + G  + V V
Sbjct: 998  TDPVFLISLKAGGVGLNL-AMADYAVLADPWWNPATEEQAVDR-----AHRIGQTKPVMV 1051

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y L+A +TI+E V+     K  +   +L 
Sbjct: 1052 YRLVATDTIEEKVMALQGAKRALVAGVLG 1080


>gi|332074276|gb|EGI84753.1| helicase conserved C-terminal domain protein [Streptococcus
            pneumoniae GA17545]
          Length = 1032

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEKANA--APIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGRHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|330808510|ref|YP_004352972.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376618|gb|AEA67968.1| Putative non-specific serine/threonine protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 897

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 3   QYHKFQ----RELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK-HWKEVHDEK 55
            Y   +    +++  ++  + +           +K  Q+       ++     +     K
Sbjct: 665 VYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLINDATLPARGSTSGK 724

Query: 56  IK--ALEVIIEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWN 105
           +      +         +++   F S LA +++                      ++E+ 
Sbjct: 725 LDSLMEMLEELFEEGRRVLLFSQFTSMLALIEEELKKRGVEYAILTGQTRDRRTPVKEFQ 784

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            GK  +      + G GLNL    + ++ +  WW+        E     R  + G ++ V
Sbjct: 785 SGKRQIFLISLKAGGVGLNLTE-ADTVIHYDPWWNPAT-----ENQATDRAYRIGQEKPV 838

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           FVY LIA+ T++E +    + KS +   +L+ 
Sbjct: 839 FVYKLIARGTVEEKIQLLQKEKSDLAAGVLDG 870


>gi|223935408|ref|ZP_03627325.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
 gi|223895818|gb|EEF62262.1| Non-specific serine/threonine protein kinase [bacterium Ellin514]
          Length = 1184

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 22/212 (10%)

Query: 3    QYH-KFQR--ELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y  + +R  ++   ++ +     E F+  +  ++  Q++        E        + +
Sbjct: 962  LYRAELKRAQQMLLRVKTQKEFAKERFHFLTSLLRLRQISCHPRLVKPESRASSAKVDAL 1021

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEG 107
                  + +     ++V   F   L               +  G T ++     +     
Sbjct: 1022 FEQLEPLVE-EGQKVLVFSQFVDMLDILRTDIEAKGWPLFYLAGDTENRGELVQRFQATE 1080

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL    + +V F  WW+       +E   + R  + G  R V  
Sbjct: 1081 GAAVFLISLKAGGFGLNLTA-ASYVVLFDPWWNPA-----VENQAIDRTHRIGQSRNVIA 1134

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+ + +I+E + Q  + KS++ D +L   K
Sbjct: 1135 YRLLIKESIEEKIRQLQKQKSSLADDVLGEEK 1166


>gi|162450775|ref|YP_001613142.1| Snf2/Rad54 family helicase [Sorangium cellulosum 'So ce 56']
 gi|161161357|emb|CAN92662.1| helicase, SNF2/RAD54 family [Sorangium cellulosum 'So ce 56']
          Length = 1031

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 69/219 (31%), Gaps = 26/219 (11%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVH 52
            + Y   +   R+   +   E      +    ++  Q A                  +   
Sbjct: 805  ELYDAVRAATRKDVVEKLAEGASVMAALEALLRLRQAACHPALIPGSSAGGAAPAARSAP 864

Query: 53   DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQ 102
              K+  L   +E+   +    +V   + S L  ++                       + 
Sbjct: 865  SSKVTRLIEALEECVADGHKALVFSQWTSLLDLVEPHLGAAGIPWSRLDGGTRDRAGVVN 924

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+   G  P++     + G GLNL    + +     WW+       +E     R  + G 
Sbjct: 925  EFQSPGGPPVMLISLKAGGTGLNLTA-ADHVFLLDPWWNPA-----VEDQAADRAHRIGQ 978

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             R V V+ L+A++T++E +L     K  I    L    +
Sbjct: 979  HRPVMVHRLVAKDTVEEGILALQERKRAIAGAALGEADR 1017


>gi|300071885|gb|ADJ61285.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1031

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 817  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 873

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 874  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 933

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 934  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 987

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q TI+E +++    K  +   +L  
Sbjct: 988  TQGTIEEKIMEIQERKKDLIANVLEG 1013


>gi|256419374|ref|YP_003120027.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256034282|gb|ACU57826.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 1354

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 26/211 (12%)

Query: 4    YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   + +   +++  + +       N+ ++  K    A              +   K+  
Sbjct: 1132 YEALRLKAVENIKRYSKDKTSKHNLNTLTEIGKLRMAAC---NTQMIDPEIRIPSSKLAV 1188

Query: 59   LEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
               I+++   N    +V   +            +L            +      ++E+  
Sbjct: 1189 FIEIVKELIDNNHRALVFSQYVKHLDLVRLALDELNVSYCYLDGSTPIPVRERVVKEFQA 1248

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   L      + G GLNL    + ++    WW+       IE     R  + G  R V 
Sbjct: 1249 GAGSLFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA-----IEEQASDRAYRIGQTRPVT 1302

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y L+ ++TI+E ++    +K  + D LL  
Sbjct: 1303 IYRLVTRHTIEEKIIALHNSKRDLADRLLEG 1333


>gi|330443927|ref|YP_004376913.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
 gi|328807037|gb|AEB41210.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]
          Length = 1167

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 959  LVKQEGFERIHIHILATLTRLKQICCHPAIFA-KDSPEPGDSAKYDMLMDLLSSLVDSGH 1017

Query: 70   PIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L+ ++           +  G T ++     +   +  + +      + G
Sbjct: 1018 KTVVFSQYTKMLSIMKKDLEIRGVPFVYLDGSTKNRLELVNKFNEDPNLLVFLVSLKAGG 1077

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1078 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1131

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K ++   ++N+
Sbjct: 1132 LTLQNRKKSLVKKVINS 1148


>gi|227503822|ref|ZP_03933871.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227199646|gb|EEI79694.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1013

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y     ++   L+            +   +  Q+ N   +Y  +     +       K+
Sbjct: 782 LYKALVDDVQKALETREGMSRRGLVLASLTRIKQICNHPAHYLGDGSSVTLKGKHRSGKV 841

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           + L  I+++   +   I+V   + +            L R       G T +K    +++
Sbjct: 842 EELMRIVDQAIESEERILVFTQYKAFGDILQPYLTQQLGREIPFLHGGVTKNKRDQMVED 901

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +      P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 902 FQSPDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQQ 955

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V VY +I   T++E +   L  K  +   ++   + 
Sbjct: 956 RNVQVYKMITAGTLEESIQDILDGKMHLAGAVVGEGEG 993


>gi|322517503|ref|ZP_08070375.1| Snf2 family protein [Streptococcus vestibularis ATCC 49124]
 gi|322123879|gb|EFX95442.1| Snf2 family protein [Streptococcus vestibularis ATCC 49124]
          Length = 1027

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 25/211 (11%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q+ L      + I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 811  QQMQQGLISA-SDQEINRHKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDL 865

Query: 63   I--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K +   +++   F   L   +                   D      + +N+G   
Sbjct: 866  LSQIKESDHRVLIFSQFRGMLDITEELLQEVGISSYKLTGSTPSDSRQEMTKAFNQGSRD 925

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G ++ V V+ L
Sbjct: 926  AFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEQNVEVFRL 979

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E +L+    K  +   +L+  +  
Sbjct: 980  ITRGTIEEKILELQEGKKNLVTTVLDGNESR 1010


>gi|227878641|ref|ZP_03996558.1| Snf2 family helicase [Lactobacillus crispatus JV-V01]
 gi|256843239|ref|ZP_05548727.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            125-2-CHN]
 gi|227861761|gb|EEJ69363.1| Snf2 family helicase [Lactobacillus crispatus JV-V01]
 gi|256614659|gb|EEU19860.1| non-specific serine/threonine protein kinase [Lactobacillus crispatus
            125-2-CHN]
          Length = 1175

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+         F   ++  K  ++        E  H       K+ 
Sbjct: 954  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYH---GKSNKLI 1010

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    N   I++   F + L                        K    +Q++N
Sbjct: 1011 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1070

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L       E+    R  + G K +
Sbjct: 1071 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAA-----EKQATDRAHRIGQKHS 1124

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1125 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1156


>gi|312864084|ref|ZP_07724320.1| SNF2 family N-terminal domain protein [Streptococcus vestibularis
            F0396]
 gi|311100497|gb|EFQ58704.1| SNF2 family N-terminal domain protein [Streptococcus vestibularis
            F0396]
          Length = 1031

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 25/211 (11%)

Query: 5    HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + Q+ L      + I        S   +  Q+ +    + +          K+ +L  +
Sbjct: 815  QQMQQGLISA-SDQEINRHKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDL 869

Query: 63   I--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            +   K +   +++   F   L   +                   D      + +N+G   
Sbjct: 870  LSQIKESDHRVLIFSQFRGMLDITEELLQEVGISSYKLTGSTPSDSRQEMTKAFNQGSRD 929

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+            ++R  + G ++ V V+ L
Sbjct: 930  AFLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQEQNVEVFRL 983

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I + TI+E +L+    K  +   +L+  +  
Sbjct: 984  ITRGTIEEKILELQEGKKNLVTTVLDGNESR 1014


>gi|312220152|emb|CBY00094.1| similar to DNA repair protein Rhp26/Rad26 [Leptosphaeria maculans]
          Length = 1224

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 28/210 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHDEKIKALEVII-- 63
           D++       N         ++ N     +           +       K++ ++ ++  
Sbjct: 709 DMKSITDGKRNMLFGVDYLRKVCNHPDLTEHKILSKKPGYDYGAPNRSGKMQVVKELLSL 768

Query: 64  EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDK-DPCTIQEWNE-GKIPL 111
            K      ++             F S L  +      G T  K     + E+N    + +
Sbjct: 769 WKKGGHKTLLFAQHRIMLDILQKFVSHLPGINWRRMDGETPIKERQNLVDEFNNNPDLDV 828

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                   G G+NL  G N ++ +   W+        +     R  + G KR V +Y L+
Sbjct: 829 FLLTTKVGGLGVNLT-GANRVIIYDPDWNPST-----DIQARERSWRLGQKREVEIYRLM 882

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +  TI+E +  R   K  + + +L   K+ 
Sbjct: 883 SAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 912


>gi|293380595|ref|ZP_06626650.1| SNF2 family N-terminal domain protein [Lactobacillus crispatus 214-1]
 gi|290922842|gb|EFD99789.1| SNF2 family N-terminal domain protein [Lactobacillus crispatus 214-1]
          Length = 1175

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 27/212 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y+   +++   L G+         F   ++  K  ++        E  H       K+ 
Sbjct: 954  LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQITKLREICCDPHLLYENYH---GKSNKLI 1010

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    N   I++   F + L                        K    +Q++N
Sbjct: 1011 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 1070

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +   P +      + G G+NL  G ++++ +  WW+L       E+    R  + G K +
Sbjct: 1071 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAA-----EKQATDRAHRIGQKHS 1124

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 1125 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 1156


>gi|116512988|ref|YP_811895.1| SNF2 family DNA/RNA helicase [Lactococcus lactis subsp. cremoris
            SK11]
 gi|116108642|gb|ABJ73782.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1034

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 820  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 876

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 877  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 936

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 937  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 990

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q TI+E +++    K  +   +L  
Sbjct: 991  TQGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|23099744|ref|NP_693210.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22777974|dbj|BAC14245.1| helicase (swi/snf family) [Oceanobacillus iheyensis HTE831]
          Length = 1051

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 80/206 (38%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K +   +  L  E I        +   +  Q+      +  + + K     K++ L+ +I
Sbjct: 832  KLRHPSFKHLDKETIRKNRIKILAGITRLRQICCHPSLFVRKYNDK---SAKLERLKQLI 888

Query: 64   EKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            + A+     +++   F S L  +                    ++     + +N+G   +
Sbjct: 889  KDASRANKRLLIFSQFTSMLQLIGKELRNKDILYYYIDGETPAEERVEICRAFNQGNREV 948

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + +WW+       +E   + R  + G +  V V  L+
Sbjct: 949  CLISLKAGGTGLNL-VGADTVILYDVWWNPA-----VEEQAIDRAHRIGQQSEVTVIRLL 1002

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ TI+E + +  R K  + + L+N 
Sbjct: 1003 SEGTIEEKMYELQRKKRELMNYLVNG 1028


>gi|319946443|ref|ZP_08020680.1| Snf2 family protein [Streptococcus australis ATCC 700641]
 gi|319747411|gb|EFV99667.1| Snf2 family protein [Streptococcus australis ATCC 700641]
          Length = 1031

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 77/210 (36%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E N       S  ++  Q+ +    + E+   +     K+ +L  ++
Sbjct: 814  KQMQDRILSSSEEELNRSKIEILSGLMRLRQICDTPSLFLEDYTGE---SGKLDSLRELL 870

Query: 64   EKANA--APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E+       +++   F   L  ++                   ++       +N G+   
Sbjct: 871  EQIKDGNQRVLIFSQFRGMLDIIEKELDALRMTSFKITGSTPANERQDMTNAFNSGQGDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G  + V VY +I
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEDQAIGRAHRMGQDKNVEVYRMI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 985  TRGTIEEKIQELQTSKRHLVSTILDGTETR 1014


>gi|325105763|ref|YP_004275417.1| SNF2-related protein [Pedobacter saltans DSM 12145]
 gi|324974611|gb|ADY53595.1| SNF2-related protein [Pedobacter saltans DSM 12145]
          Length = 964

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 22/207 (10%)

Query: 4   YHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y K + E   +L                     K  Q+AN  V  + E   +      + 
Sbjct: 745 YEKTKSEYRNELLKSIENGEFSKSPVQMLQGLTKLRQIANHPVLINHEYEGESSKFTDVI 804

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTIQEW-NEGK 108
                + +A    ++V   F   L   +  F +          +  +    ++E+ N+  
Sbjct: 805 YKLQSVIEA-GHKVLVFSQFVKQLDLYRNYFDKNHIAYSYLDGSTQQRGKVVEEFKNDKN 863

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +      + G GLNL    + +     WW+    QQ I+R       + G  + VF+Y
Sbjct: 864 IQVFLISIKAGGVGLNLTE-ADYVFILDPWWNPAIEQQAIDR-----SHRIGQTKNVFIY 917

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I ++T++E +L     K T+   L+
Sbjct: 918 KFITKDTVEEKILALQNRKLTVAKSLI 944


>gi|125625080|ref|YP_001033563.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493888|emb|CAL98882.1| SWI/SNF family helicase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 1034

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 23/206 (11%)

Query: 6    KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            +  ++   ++     +       +   +  Q+ N    + ++         K++ L  ++
Sbjct: 820  ELMQKQVLEMDNAALSRSRIEILAGITRLRQICNTPALFMDDYK---GSSGKLERLRELL 876

Query: 64   --EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +    ++   F            +             +      +Q +N G    
Sbjct: 877  AQIKDSGHRPLIFSQFTKVFPHIEKLMEEQEMTAYKLTGSTPIKDRLSMVQAFNAGSRDA 936

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    ++++   LWW+       +E   + R  + G K  V V  LI
Sbjct: 937  FLVSLKAGGVGLNLTS-ADVVILVDLWWNPA-----VEEQAIARAHRMGQKNTVEVIRLI 990

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             Q TI+E +++    K  +   +L  
Sbjct: 991  TQGTIEEKIMEIQERKKDLIANVLEG 1016


>gi|187934555|ref|YP_001886021.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187722708|gb|ACD23929.1| SWI/SNF family helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 1086

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L     +            S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMENYLGT---SGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            L  I++ +  +   I+V   F S L            L        +       + ++N+
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFND 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+       +E     R  + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQATDRAHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIAQ TI+E +++   +K  + D +L  
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTILGD 1065


>gi|257094070|ref|YP_003167711.1| Non-specific serine/threonine protein kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046594|gb|ACV35782.1| Non-specific serine/threonine protein kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1400

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 27/215 (12%)

Query: 7    FQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             +RE   D+        E    FN  ++  +  + A      + E     +   K++A  
Sbjct: 1182 LRREAASDIDATLDAAPEAQARFNILAQLTRLRRAACDPRLCNPEF---GITGAKVQAFA 1238

Query: 61   VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
             +  +  AN    +V   F   L              +         +    +  +  G+
Sbjct: 1239 ELASELIANGHKALVFSQFVDFLQVLREPLDESGVHYQYLDGATPAAERSRRVAAFQAGE 1298

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L      + G GLNL    + +V    WW+        E   + R  + G  R V VY
Sbjct: 1299 GDLFLISLKAGGFGLNLTA-ADYVVITDPWWNPAA-----EDQAMGRAHRIGQLRPVTVY 1352

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             L+ + T++E ++     K  + D +L   +   +
Sbjct: 1353 RLVTRGTVEERIVDLHHEKRALADSILAEGEASAL 1387


>gi|329116851|ref|ZP_08245568.1| SNF2 family N-terminal domain protein [Streptococcus parauberis NCFD
            2020]
 gi|326907256|gb|EGE54170.1| SNF2 family N-terminal domain protein [Streptococcus parauberis NCFD
            2020]
          Length = 1031

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +   + +     D+    IE     S   +  Q+ +    + +     +    K+ +L+ 
Sbjct: 816  QMQDRIRNSSDADINRRKIE---ILSGITRLRQICDTPSLFMDY----DGDSGKLDSLKT 868

Query: 62   IIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
            ++ +   N    ++   F   L                       +      + +N G  
Sbjct: 869  LLVQIKENGHRALIFSQFRGMLDIAEKEMEALGLTHYKITGSTPANDRQEMTRAFNNGSK 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL  G + +V   LWW+            ++R  + G K  V V+ 
Sbjct: 929  DAFLISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVFR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            LI + TI+E +L+    K  +   +L+  +  
Sbjct: 983  LITRGTIEEKILEMQEGKRNLVTTVLDGNESR 1014


>gi|321313173|ref|YP_004205460.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
 gi|320019447|gb|ADV94433.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis BSn5]
          Length = 922

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E+  + +     K++ 
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLEK 753

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +A     ++   +      ++           +      +  +    ++++ 
Sbjct: 754 LLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 814 RKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 868 HVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|304408004|ref|ZP_07389654.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304343023|gb|EFM08867.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 966

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 27/219 (12%)

Query: 3   QYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----WKEVHDEKI 56
            Y      L   L  E          S   K  QL +       E      W      K 
Sbjct: 731 LYENIVSGLLEHLDKEGPMRRRGLILSALTKLKQLCDHPQLLLGEGVAGDAWDIERSNKT 790

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
             L  +IE+        +V   F              +         G    +    I+ 
Sbjct: 791 LRLVEMIEEIAAEGEKCLVFTQFVDMGLTLQRLLEERIGLPVPYLHGGVPKAQRDAMIER 850

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +     P         + G GLNL    N +  F  WW+       +E     R  + G 
Sbjct: 851 FQHSDAPGCAFVLSLKAGGTGLNLTA-ANHVFHFDRWWNPA-----VENQATDRAFRIGQ 904

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V V+  +   T++E + Q +  K ++ D +++  ++
Sbjct: 905 TKKVQVHKFVTLGTLEERIDQMIDRKQSLNDQIVSQSEQ 943


>gi|298714024|emb|CBJ27256.1| probable chromatin remodelling complex ATPase chain [Ectocarpus
           siliculosus]
          Length = 1563

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVHD 53
           K Y          + G +       +  ++  +  N    +                 + 
Sbjct: 510 KVYKGVLMRDIDTINGTSAGRTAILNIVMQLRKCCNHPYLFPNTEDRNLDPMGEHLVENC 569

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTI 101
            K+  L+ ++   KA    ++V                               D     I
Sbjct: 570 GKMILLDKLLTRLKAAGHRVLVFSQMTRMMDILEDLMHMREYKYCRIDGNTPHDTRQDLI 629

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +E+N       +      + G G+NLQ   +  + +   W+ +      +     R  + 
Sbjct: 630 EEYNAPGSEKFIFLLSTRAGGLGINLQS-ADTCILYDSDWNPQA-----DLQAQDRCHRI 683

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V VY L+ ++TI+E V++R + K  +  +++ 
Sbjct: 684 GQTKTVKVYRLVTEDTIEEKVVERAQQKLKLDAMVVQ 720


>gi|114332146|ref|YP_748368.1| SNF2-related protein [Nitrosomonas eutropha C91]
 gi|114309160|gb|ABI60403.1| SNF2-related protein [Nitrosomonas eutropha C91]
          Length = 897

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 4   YHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           Y +  + L   L    G         S  ++  Q+ N    +  +  WK     K   L 
Sbjct: 666 YQEAVKALARALGSSVGGIERRGLVLSFLMRFKQICNHPSQWLNDGGWKPEESGKFARLH 725

Query: 61  VIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN-E 106
            I E        ++V   F                R       G  + +    ++ +  +
Sbjct: 726 EIAETVAARQEKLLVFTQFQETTAPLAAFLGSVFGREGLVLHGGTPVVRRRELVRRFQED 785

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +P       + G GLNL    + +V F  WW+       +E     R  + G  + V 
Sbjct: 786 ESVPFFVLSIKAGGSGLNLTA-ASHVVHFDRWWNPA-----VENQATDRAYRIGQHKNVL 839

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+  I + TI+E + + +  K  +   ++  
Sbjct: 840 VHKFICRGTIEERIDELIHAKQQLVQDVVEG 870


>gi|315282593|ref|ZP_07870972.1| SNF2 family helicase [Listeria marthii FSL S4-120]
 gi|313613760|gb|EFR87525.1| SNF2 family helicase [Listeria marthii FSL S4-120]
          Length = 1072

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L+ ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILIFSQFTGMLSIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|295693012|ref|YP_003601622.1| non-specific serine/threonine protein kinase [Lactobacillus
           crispatus ST1]
 gi|295031118|emb|CBL50597.1| Non-specific serine/threonine protein kinase [Lactobacillus
           crispatus ST1]
          Length = 1018

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 27/212 (12%)

Query: 3   QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y+   +++   L G+         F   ++  K  ++        E  H       K+ 
Sbjct: 797 LYNMQTQKIIAQLNGQGDEDFKRSRFQILAQINKLREICCDPHLLYENYH---GKSNKLI 853

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           A   +I+    N   I++   F + L                        K    +Q++N
Sbjct: 854 ATIELIKNNLANGHKILLFSQFTAMLDILHENLARLRLPLFTITGSTPKTKRQEQVQKFN 913

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +   P +      + G G+NL  G ++++ +  WW+L       E+    R  + G K +
Sbjct: 914 QMAQPGVFLISLKAGGTGINLT-GADVVIHYDPWWNLAA-----EKQATDRAHRIGQKHS 967

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V +Y ++ +++I+E ++   + K+ + D++L 
Sbjct: 968 VKIYKMVTEDSIEERIIALQQKKAELADIILQ 999


>gi|212536498|ref|XP_002148405.1| DNA repair protein Rhp26/Rad26, putative [Penicillium marneffei
           ATCC 18224]
 gi|210070804|gb|EEA24894.1| DNA repair protein Rhp26/Rad26, putative [Penicillium marneffei
           ATCC 18224]
          Length = 1157

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y +F      +                   ++ N                    +   
Sbjct: 654 KAYEQFLNSQ--ECNSILAGRRQVLYGVDMLRKICNHPDLVTHKLFSATTGYGEPSKSGK 711

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCTIQ 102
            K+    + + +      ++       L  L            +       + +    + 
Sbjct: 712 MKVVKALLELWRDTGHKTLLFAQHRIMLNILEKFVNTLSGFNYRRMDGETPIHRRQLLVD 771

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N    I +        G G+NL  G + ++ +   W+              R  + G 
Sbjct: 772 EFNNSPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDM-----QARERAWRLGQ 825

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 826 KREVAIYRLMTAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 865


>gi|227505607|ref|ZP_03935656.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227197760|gb|EEI77808.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1087

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKALEVII 63
             + QR L    +          +   +  QLA        E        D     L  I+
Sbjct: 874  RERQRVLRLLTEDPESNRVEVLAALTRLRQLAISPTLVEPESGAPSSKLDAMTGLLRDIL 933

Query: 64   EKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
             + +   +++   F S LA ++                       I+ + EG   +    
Sbjct: 934  AEEH--RVLIFSQFTSYLAEIRARLEAEGVSFSYLDGGTRDRDAAIRAFTEGNTQVFLIS 991

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    + ++    WW+        E   + R  + G  + V VY L++ NT
Sbjct: 992  LKAGGVGLNLTQ-ADYVIVADPWWNPAA-----EAQAIDRAHRIGQTQPVTVYRLVSANT 1045

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            I++ V+    TK  +    L 
Sbjct: 1046 IEDKVVALQDTKRALSSAFLE 1066


>gi|163751389|ref|ZP_02158614.1| hypothetical protein KT99_01444 [Shewanella benthica KT99]
 gi|161328692|gb|EDP99840.1| hypothetical protein KT99_01444 [Shewanella benthica KT99]
          Length = 1004

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 25/213 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYDEEKHWKEV-HDEKIKA 58
            Y     E+   ++             S  ++  Q  N      ++     +    K++ 
Sbjct: 774 IYQSIVDEITTQMEQTQESQGQKVIMLSALLRLKQCCNHPAQVLQDGSEFSIERSIKLQR 833

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L    ++A  N   I++   F    +++Q                  +  +    IQ++ 
Sbjct: 834 LVETCKEAIGNNESILIFSQFTEVCSQIQKILKNQLGFQTYYLHGATSRKRREQMIQQFQ 893

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               P  +      + G G+ L    N ++ F  WW+       +E     R  + G ++
Sbjct: 894 AEDSPPAVFILSLKAGGVGITLTK-ANHVIHFDRWWNPA-----VEDQATDRAYRIGQQK 947

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VF +  I   TI+E + + L  K  I D ++ 
Sbjct: 948 TVFAHKFITLGTIEEKIDKMLEDKKKIADSIIG 980


>gi|297583813|ref|YP_003699593.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297142270|gb|ADH99027.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 919

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIK 57
            Y     E++   +   + ++        +K  QL N      +E     +      K  
Sbjct: 691 MYKAVVEEMFDQYEEAPDPVKRAALFKTMMKLKQLCNHPAQARKELGLNRFNPGRSPKWD 750

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
               ++          IV   F    A  Q+               G T  +    I+ +
Sbjct: 751 LANELLSNWANQGKRAIVFTQFRYTGAMFQEMQLIQGNPPVPFLHGGLTAIQRKNMIRSF 810

Query: 105 NE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +   IP +     + G GLNL    + ++ F  WW+       +E     R  + G K+
Sbjct: 811 KDNPDIPFMIISLRAGGFGLNLTE-ASAVLHFDRWWNPA-----VEDQATDRVHRIGQKQ 864

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           AV V+ L+A+ TI+E +   ++ K  +Q+ L++ 
Sbjct: 865 AVEVHTLMAEGTIEERIDDLIQKKQQLQEALIDG 898


>gi|15618758|ref|NP_225044.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|16752190|ref|NP_445557.1| SNF2 family helicase [Chlamydophila pneumoniae AR39]
 gi|33242209|ref|NP_877150.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
 gi|4377165|gb|AAD18987.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]
 gi|8163540|gb|AAF73724.1| helicase, Snf2 family [Chlamydophila pneumoniae AR39]
 gi|33236720|gb|AAP98807.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]
          Length = 1166

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 958  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDAPEPGDSAKYDMLMDLLSSLVDSGH 1016

Query: 70   PIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  ++           +  G T ++     Q   +  + +      + G
Sbjct: 1017 KTVVFSQYTKMLGIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGG 1076

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1077 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1130

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K ++   ++N+
Sbjct: 1131 LTLQNRKKSLVKKVINS 1147


>gi|16080681|ref|NP_391509.1| ATP-binding SNF2 helicase or protein kinase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311584|ref|ZP_03593431.1| hypothetical protein Bsubs1_19616 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315911|ref|ZP_03597716.1| hypothetical protein BsubsN3_19532 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320824|ref|ZP_03602118.1| hypothetical protein BsubsJ_19485 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325110|ref|ZP_03606404.1| hypothetical protein BsubsS_19646 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81345827|sp|P94593|YWQA_BACSU RecName: Full=Uncharacterized ATP-dependent helicase ywqA
 gi|2636153|emb|CAB15645.1| putative ATP-binding SNF2 helicase or protein kinase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 922

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E+  + +     K++ 
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLEK 753

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +A     ++   +      ++           +      +  +    ++++ 
Sbjct: 754 LLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 814 RKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 868 HVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|15836382|ref|NP_300906.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
 gi|8979223|dbj|BAA99057.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]
          Length = 1166

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 958  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDAPEPGDSAKYDMLMDLLSSLVDSGH 1016

Query: 70   PIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              +V   +   L  ++           +  G T ++     Q   +  + +      + G
Sbjct: 1017 KTVVFSQYTKMLGIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGG 1076

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1077 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1130

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K ++   ++N+
Sbjct: 1131 LTLQNRKKSLVKKVINS 1147


>gi|205375279|ref|ZP_03228069.1| SNF2 family helicase [Bacillus coahuilensis m4-4]
          Length = 248

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKIKA 58
            Y +  +E +  L+                +  QL N    Y   E          K+  
Sbjct: 24  LYEQLVQETFEKLKTLKGFERKGLILQMLGRLKQLCNHPSLYFKEEVPVDVLKRSYKMAK 83

Query: 59  LEVIIEKANAAP--IIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWN 105
           L  I+E    +    +V   +                             +    +Q++ 
Sbjct: 84  LHEIVENVVESKEACLVFTQYIGMGEMIQDYVKKRFGVHAPFLNGSMPKQQRDKLVQQFQ 143

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+ P+      + G GLNL    N +V +  WW+       +E     R  + G  + V
Sbjct: 144 NGEFPVFILSLKAGGTGLNLTA-ANHVVHYDRWWNPA-----VENQATDRAYRIGQTKFV 197

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LIA  T++E +   L  K  + D ++ +
Sbjct: 198 HVHKLIASGTLEEKIDGMLEKKQALNDDIIQS 229


>gi|189204870|ref|XP_001938770.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985869|gb|EDU51357.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1246

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 73/227 (32%), Gaps = 33/227 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
           K   + ++     L  E++++                ++ N     + +   K+      
Sbjct: 693 KLTRQQRQAYEAFLASEDMKSIANGKRQMLFGVDFLRKICNHPDLTEHKTLSKKPGYDYG 752

Query: 52  ---HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTL 94
                 K++ ++ ++   K      ++       L               ++        
Sbjct: 753 NPNRSGKMQVVKELLSLWKKGGHKTLLFAQHRIMLDILQKFISQLPDINWRRMDGDTPIK 812

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+     +  N   + +        G G+NL  G N ++ +   W+        +     
Sbjct: 813 DRQNLVDEFNNNPDLHVFLLTTKVGGLGVNLT-GANRVIIYDPDWNPST-----DIQARE 866

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G KR V +Y L++  TI+E +  R   K  + + +L   K+ 
Sbjct: 867 RSWRLGQKREVEIYRLMSAGTIEEKIYHRQIFKQFLTNKVLKDPKQR 913


>gi|320538119|ref|ZP_08038015.1| protein, SNF2 family [Treponema phagedenis F0421]
 gi|320145032|gb|EFW36752.1| protein, SNF2 family [Treponema phagedenis F0421]
          Length = 1211

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 23/213 (10%)

Query: 1    MKQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +  Y    R+      + +     +           Q+ N    YD+          K+ 
Sbjct: 985  VAIYESLIRQQLKTALNAKDSIQRSAFIVKLLTALKQVCNHPRTYDKISPPDINLSGKML 1044

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEW 104
            +L +++++        ++   +   L  L++                    K    +  +
Sbjct: 1045 SLIILLKEILTAGEKTLIFSQYTETLFLLKEIIKAELDEDCLLLHGQMPARKRQQNVTAF 1104

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              E    +      + G GLNL    + ++ F LW++       +E     R  + G ++
Sbjct: 1105 QTEPDKRIFLISLKAGGTGLNLTA-ASRVIHFDLWYNPA-----VEDQATDRAFRIGQQK 1158

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             VFV+  I   T +E + + ++ K  + D  L 
Sbjct: 1159 HVFVHRFICAGTFEEKIDEMIQRKRAVSDKTLG 1191


>gi|315122947|ref|YP_004064953.1| DNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016707|gb|ADT70044.1| DNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 1058

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKA--LE 60
               + +L      + ++    A     +K  Q+       + E    E    K++     
Sbjct: 844  RALEEKLIDLFAEQGVQKSKLAFLEALLKLRQICCHPKLIEPET---EAASAKLEWLSSH 900

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  +    +I+   F S L  +                        I E+  G   + 
Sbjct: 901  LPLMLSLGRKVIIFSQFTSALDLIAERLNELNINFSMLTGQTRHRDKVIDEFTSGNTSVF 960

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ F  WW+       +E+    R  + G    VFVY LI 
Sbjct: 961  LISLKAGGTGLNLTQ-ADTVIHFDPWWNPA-----VEKQATDRAYRIGQTNPVFVYKLIM 1014

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
             N+I++ V Q  + K  + D L 
Sbjct: 1015 ANSIEQKVFQMQQDKQALVDALF 1037


>gi|188587846|ref|YP_001921061.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|188498127|gb|ACD51263.1| SWI/SNF family helicase [Clostridium botulinum E3 str. Alaska E43]
          Length = 1086

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L     +            S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMENYLGT---SGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            L  I++ +  +   I+V   F S L            L        +       + ++N+
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFND 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+       +E     R  + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQATDRAHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIAQ TI+E +++   +K  + D +L  
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTILGD 1065


>gi|291486201|dbj|BAI87276.1| hypothetical protein BSNT_05537 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 922

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++ +  +             S   +  Q+ +    Y +E+  + +     K++ 
Sbjct: 694 LYEQLVKDTFDHMTSLTGMQRKALILSMLGRLKQICDHPALYLKEEQTELLAGRSVKLEK 753

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++   +A     ++   +      ++           +      +  +    ++++ 
Sbjct: 754 LLELMTAIRAQNESCLIFTQYIQMGNMMKRLLEKTFGEPVQFLNGSLSKQERDTLVEKFQ 813

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             + P L     + G GLNL    N ++ +  WW+       +E     R  + G +R V
Sbjct: 814 RKEYPTLILSLKAGGTGLNLTA-ANHVIHYDRWWNPA-----VENQATDRAYRIGQERFV 867

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ +I   TI+E +   L +K T+ D ++ +
Sbjct: 868 HVHKMITTGTIEEKIDVMLESKQTLNDQIIQS 899


>gi|318040737|ref|ZP_07972693.1| SNF2 family DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 1043

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 71/224 (31%), Gaps = 32/224 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y++   E    +    +   +    +   K  Q+ N      ++              
Sbjct: 806  KLYNQTVEESLDAIARAPLGQKHGQVLALLTKLKQICNHPALALKQDPDPSDVGFFKEFA 865

Query: 52   -HDEKIKALEVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKD 97
                K++ LE I+E+        ++   F                +         +  + 
Sbjct: 866  ARSAKVQRLEEILEEVIEAGDRALLFTQFAEWGHLLKAHLEQRWKQPVPFLYGNTSKAER 925

Query: 98   PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  + E      L      + G GLNL    + +     WW+       +E     R
Sbjct: 926  QAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDR 979

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G +  V V+  I   +++E + + ++ KS + + ++ + +
Sbjct: 980  AYRIGQQNRVMVHKFITSGSVEERIDRMIKEKSKLAEDIVGSGE 1023


>gi|257456585|ref|ZP_05621780.1| Snf2 family protein [Treponema vincentii ATCC 35580]
 gi|257446005|gb|EEV21053.1| Snf2 family protein [Treponema vincentii ATCC 35580]
          Length = 1250

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 23/214 (10%)

Query: 3    QYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y        +     +                 Q+ N    YDE          K  AL
Sbjct: 1027 LYESLVETQLKNVLKTEEGIKRNALVLKLLTALKQVCNHPHVYDESFQTNVTLSGKTAAL 1086

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWN 105
              ++ +        ++   +   L  L+K               Q     +         
Sbjct: 1087 MQLLGEILDAGEKTLIFSQYTQTLFLLRKLIQEQFGDEPLLLHGQMPLSARKAAVESFQT 1146

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G GLNL      ++ F LW++       IE     R  + G    V
Sbjct: 1147 NPAQRIFLISLKAGGTGLNLTA-ATRVIHFDLWYNPA-----IEDQATDRAFRIGQHNTV 1200

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            FV   I   T +E + + ++ K  I  + L+  +
Sbjct: 1201 FVSRFICAGTFEEKIDEMIQKKRHISQMTLSGGE 1234


>gi|153940180|ref|YP_001390936.1| SNF2 family helicase [Clostridium botulinum F str. Langeland]
 gi|152936076|gb|ABS41574.1| helicase, Snf2 family [Clostridium botulinum F str. Langeland]
 gi|295318999|gb|ADF99376.1| helicase, Snf2 family [Clostridium botulinum F str. 230613]
          Length = 1097

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + ++N    
Sbjct: 934  LVQEGVDEGKKILLFSQFTSVLKNISRLLKKECIEYFYLDGSTNASERIKLVDKFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|194397845|ref|YP_002038154.1| SNF2 family protein [Streptococcus pneumoniae G54]
 gi|194357512|gb|ACF55960.1| SNF2 family protein [Streptococcus pneumoniae G54]
          Length = 1032

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 24/212 (11%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813  QQMRDH-LAQVSEQEFQRSRVEIXSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63   IEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            + +       +++   F   L                        +     + +N+G+  
Sbjct: 869  LVQVADGGHRVLIFSQFKGMLEKIEQELPDLGLTSFKITGSTPAKERQDMTKAFNQGERD 928

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G GLNL  G + ++   LWW+       +E   + R  + G +  V VY L
Sbjct: 929  AFLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAIGRAHRMGQEETVEVYRL 982

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + + TI+E + +    K  +   +L+  +   
Sbjct: 983  VTKGTIEEKIQELQEQKKHLVSQVLDGTESRG 1014


>gi|325107086|ref|YP_004268154.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
 gi|324967354|gb|ADY58132.1| SNF2-related protein [Planctomyces brasiliensis DSM 5305]
          Length = 610

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 23/206 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   ++E    L   G+ I   +     ++  Q+ N      +    +    +++ A  
Sbjct: 378 AYDIAEKEGVVQLNDMGDEITIQHVFELVMRLKQITN-----CDPLTGESAKKDRLVADM 432

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEW-NEGKIPL 111
             I  A+ A  I+   +   +  L +         +  G    +    ++++  +    L
Sbjct: 433 EEI-AASGAKAILFSQWTKTIDWLYEHTKQFGALVYHGGVPTKQREPILKQFKEDPNSHL 491

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ+    +  +  WW+       IE   + R  + G K  V V   I
Sbjct: 492 LLMSYGTGAVGLNLQF-SQYVFLYDRWWNPA-----IEDQAINRAHRIGVKNPVIVTRFI 545

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++T++E +   L+ K  I + +L  
Sbjct: 546 CKDTVEERIDLVLQQKRAIFEKVLGE 571


>gi|309800861|ref|ZP_07694993.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
            JCVIHMP022]
 gi|308222397|gb|EFO78677.1| SNF2 family N-terminal domain protein [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1277

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L        N       ++     +L         +         K+
Sbjct: 1055 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKN---GSAKL 1111

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            +A++ ++         +++   F S L  +            A        K    + E+
Sbjct: 1112 EAIDDLVVNCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVDEF 1171

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G ++++    WW+     +  +     R  + G  + 
Sbjct: 1172 NGDDVPVFLISLKAGNTGLNL-VGASVVIHADPWWN-----EAAQNQATDRAHRIGQTQD 1225

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1226 VNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1258


>gi|306822587|ref|ZP_07455965.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|304554132|gb|EFM42041.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
          Length = 1286

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L        N       ++     +L         +         K+
Sbjct: 1064 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKN---GSAKL 1120

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            +A++ ++         +++   F S L  +            A        K    + E+
Sbjct: 1121 EAIDDLVVNCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVDEF 1180

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G ++++    WW+     +  +     R  + G  + 
Sbjct: 1181 NGDDVPVFLISLKAGNTGLNL-VGASVVIHADPWWN-----EAAQNQATDRAHRIGQTQD 1234

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1235 VNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1267


>gi|217964204|ref|YP_002349882.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|217333474|gb|ACK39268.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
 gi|307571229|emb|CAR84408.1| helicase, Snf2 family [Listeria monocytogenes L99]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|254852266|ref|ZP_05241614.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300766136|ref|ZP_07076102.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
 gi|258605574|gb|EEW18182.1| helicase [Listeria monocytogenes FSL R2-503]
 gi|300513159|gb|EFK40240.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|296119487|ref|ZP_06838045.1| putative DNA/RNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967370|gb|EFG80637.1| putative DNA/RNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1036

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 27/224 (12%)

Query: 3    QYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEK 55
             Y     ++   ++             S   +  Q+ N   +Y  +             K
Sbjct: 803  LYKALVDDIQLRMETAPKGMALRGLVLSSLTRIKQICNHPAHYLGDGSPVTSKGKHRSGK 862

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQ 102
            ++ L  I++    +   +++   + +    LQ                G T ++    + 
Sbjct: 863  VEKLMEILDSAVTHDERVLIFTQYKAFGDILQPYLSAQLGAKIPFLHGGVTKNRRDDMVT 922

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++      P +     + G GLNL    NI+V    WW+       +E     R  + G 
Sbjct: 923  DFQAADGPPAMILSLKAGGTGLNLTA-ANIVVHMDRWWNPA-----VENQATDRAFRIGQ 976

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + V VY +I   T++E +   L  K+ +   ++   +     +
Sbjct: 977  SKNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEGWITEL 1020


>gi|46907873|ref|YP_014262.1| SNF2 family helicase [Listeria monocytogenes str. 4b F2365]
 gi|254931583|ref|ZP_05264942.1| helicase [Listeria monocytogenes HPB2262]
 gi|46881142|gb|AAT04439.1| helicase, Snf2 family [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583138|gb|EFF95170.1| helicase [Listeria monocytogenes HPB2262]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|284040459|ref|YP_003390389.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283819752|gb|ADB41590.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1185

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 22/206 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y    +E    ++ ++  A             Q+ N    Y ++ +       K   L 
Sbjct: 961  LYQSVVQESLRAIEEKDGIARRGLVLKLMTALKQIGNHPHQYLKKGNAAPSLSGKATLLL 1020

Query: 61   VII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
             ++    AN   +++   +      L +               G +  +    ++++   
Sbjct: 1021 SLLETIYANHEKVLIFTQYKEMGELLTQFIQQSFGTQPLFLHGGTSRPERDRMVEQFQRN 1080

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +          + G GLNL    N ++ F LWW+       +E     R  + G  + V 
Sbjct: 1081 RSDHTFILSLKAGGTGLNLTQ-ANHVIHFDLWWNPA-----VESQATDRAFRIGQTKNVM 1134

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQD 192
            VY L+ Q T++E +   +R+K  + D
Sbjct: 1135 VYRLMNQGTLEEKIDAMIRSKRELAD 1160


>gi|119487132|ref|XP_001262421.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
           181]
 gi|119410578|gb|EAW20524.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
           181]
          Length = 1214

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 69/219 (31%), Gaps = 28/219 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEKI 56
            Y  F +    +++                 ++ N     + +    ++         K+
Sbjct: 705 AYESFLKS--EEMESILKGRRQILYGVDILRKICNHPDLQNHKLQSHQLGYGNANKSGKM 762

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPCTIQ 102
           + ++ ++   +      ++       L               ++        ++     +
Sbjct: 763 QVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVRSLSGFNHRRMDGTTPIQNRQTMVDE 822

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I +        G G+NL  G + ++ +   W+        +     R  + G K
Sbjct: 823 FNNDPNIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRLGQK 876

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 877 RDVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 915


>gi|47093680|ref|ZP_00231434.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|47017941|gb|EAL08720.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
 gi|328465005|gb|EGF36284.1| SNF2 family helicase [Listeria monocytogenes 1816]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|315655316|ref|ZP_07908216.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490256|gb|EFU79881.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 988

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV------IIEKANAAPIIVAY 75
             N  +   +  QLA  A   D + H        +            +        +V  
Sbjct: 785 RINILTALTRLRQLALSAKLIDPQAHEDGAKVTYLLQTLEGLRDDSNLNPRQRHQALVFS 844

Query: 76  HFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            F S LA L+               T       +  +  G++ +      + G GLNL  
Sbjct: 845 QFTSFLAILRERLDQAGIDYAYLDGTSRDRDRQVARFQNGEVDVFLISLKAGGFGLNLTQ 904

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +     WW+        E   V R  + G KR V VY L+A +TI++ VL+    K
Sbjct: 905 -ADYVFLTDPWWNPAA-----EAQAVDRAHRLGQKRFVNVYRLVATDTIEQRVLELQERK 958

Query: 188 STIQDLLLNALKKETI 203
             +   +L+  +   +
Sbjct: 959 RDLIGAVLSGQENREV 974


>gi|226224245|ref|YP_002758352.1| SNF2-type helicase [Listeria monocytogenes Clip81459]
 gi|225876707|emb|CAS05416.1| Putative SNF2-type helicase [Listeria monocytogenes serotype 4b str.
            CLIP 80459]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|254824296|ref|ZP_05229297.1| helicase [Listeria monocytogenes FSL J1-194]
 gi|255520940|ref|ZP_05388177.1| hypothetical protein LmonocFSL_06916 [Listeria monocytogenes FSL
            J1-175]
 gi|293593530|gb|EFG01291.1| helicase [Listeria monocytogenes FSL J1-194]
          Length = 1072

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEEGQPLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|188591304|ref|YP_001795904.1| DNA/RNA helicase [Cupriavidus taiwanensis LMG 19424]
 gi|170938198|emb|CAP63184.1| putative DNA/RNA Helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 997

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 22  AFNSASKTVKCLQLANGAVYYDE----EKHWKEVHDEKIKALEVIIE--KANAAPIIVAY 75
             +  ++ ++  + A            +   +     K++A   +     A+    +V  
Sbjct: 788 RLHVLAQLMRLRRAACDPRLVTPEVAAQLSDQGGEGAKVRAFVELASGLAASGHKTLVFS 847

Query: 76  HFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            F   L  L++                   +    +  +  G+  +      + G GLNL
Sbjct: 848 QFVDFLQLLRQGLERAGLALQYLDGATPAAERTRRVAAFQAGEGDVFLISLKAGGFGLNL 907

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++    WW+        E   + R  + G +R V VY LI   TI+E +++  R
Sbjct: 908 TA-ADYVIVADPWWNPAA-----EDQAMGRAHRIGQRRPVTVYRLINAGTIEERIVELHR 961

Query: 186 TKSTIQDLLLNA 197
            K  + D LL A
Sbjct: 962 DKRALADGLLEA 973


>gi|227487933|ref|ZP_03918249.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542574|ref|ZP_03972623.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092139|gb|EEI27451.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181772|gb|EEI62744.1| chromodomain helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1039

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 28/216 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYY----DEEKHWKEVHDE 54
             Y  +  ++   LQ + +          +   +  Q+ N   ++     E  H  +    
Sbjct: 796  LYKSYVDDVQRKLQEQKMGGIQYRGIVLASLTRIKQICNHPAHFLGDGSEMTHHGKHRSG 855

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTI 101
            K++ L  I++ A      +++   + +    LQ                G         +
Sbjct: 856  KVEKLMEIVDAALLRERRVLIFTQYTAFGTMLQHYLAERTGIDIPFLHGGVPQKMRTRMV 915

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             ++  EG  P+      + G GLNL      +V    WW+       +E     R  + G
Sbjct: 916  ADFQSEGGPPIFILSLKAGGTGLNLTA-ATEVVHMDRWWNPA-----VEDQATDRAYRIG 969

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +  V VY ++A  T++E + + L  K+ +   ++ 
Sbjct: 970  QESDVHVYKMVAAGTLEEKIQKVLEEKTALAGSVVG 1005


>gi|289434930|ref|YP_003464802.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171174|emb|CBH27716.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1071

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   +++   F   LA ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E + +  + K  + D L+ 
Sbjct: 1022 KGTIEERIFELQKKKQALVDELIQ 1045


>gi|260888903|ref|ZP_05900166.1| superfamily II DNA/RNA helicase, SNF2 family [Leptotrichia hofstadii
            F0254]
 gi|260861350|gb|EEX75850.1| superfamily II DNA/RNA helicase, SNF2 family [Leptotrichia hofstadii
            F0254]
          Length = 1119

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y  + ++      +   E        +   K  Q+ N    +DE    +    + +K 
Sbjct: 904  KLYMAYVKQAKKELREFDKEENNNLKVLAILTKLRQICNSPQLFDENYKGEVAKIKLLKE 963

Query: 59   LEVIIEKANAAPIIVAYHF----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            L   I + N   +++   F                            +     +++N G+
Sbjct: 964  LMPDILENNH-RMLIFSQFLGTLEEIKIELEKEEVKYFFIDGSVKSKERMEISKKFNSGE 1022

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              ++     + G GLNL  G ++++ +  WW+       +E     R  + G K++V V 
Sbjct: 1023 GQVVLISLKAGGTGLNL-VGADVVIHYDPWWNFA-----VENQASDRAHRIGQKKSVQVI 1076

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI + TI+E +++    K T+ + +L 
Sbjct: 1077 KLITEGTIEEKIIKLQEKKRTLSENILE 1104


>gi|187779742|ref|ZP_02996215.1| hypothetical protein CLOSPO_03338 [Clostridium sporogenes ATCC 15579]
 gi|187773367|gb|EDU37169.1| hypothetical protein CLOSPO_03338 [Clostridium sporogenes ATCC 15579]
          Length = 1081

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 861  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDEYK---GGSSKLRIAME 917

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + E+N    
Sbjct: 918  LVQEGVDEGKKILLFSQFTSVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSN 977

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V 
Sbjct: 978  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNLVQVI 1031

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1032 KLVCKGTIEEKIIMLQDDKKELINNVMNS 1060


>gi|254829448|ref|ZP_05234135.1| helicase [Listeria monocytogenes FSL N3-165]
 gi|258601864|gb|EEW15189.1| helicase [Listeria monocytogenes FSL N3-165]
          Length = 1072

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|258650324|ref|YP_003199480.1| SNF2-like protein [Nakamurella multipartita DSM 44233]
 gi|258553549|gb|ACV76491.1| SNF2-related protein [Nakamurella multipartita DSM 44233]
          Length = 1141

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 2    KQYH---KFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y    + +R+    L  +        F          QL+      DE   ++++   
Sbjct: 915  QVYQRHLQRERQKILGLLQDKRSLDDHRFQILRSLTLLRQLSLDPSLVDE--SYRDIPSS 972

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEW 104
            K++     I +   +   ++V   F   LAR +                       ++ +
Sbjct: 973  KLEVAIDRICEIVESGHRVLVFSQFTRFLARARDQLHHLGIAHCLLDGRTKDRSAVVEAF 1032

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              G  P+      + G GLNL    +  +    WW+        E   + R  + G  + 
Sbjct: 1033 RTGVAPVFLISLKAGGFGLNLTE-ADYCILLDPWWNPAA-----EAQAIDRAHRIGQTKN 1086

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY  +A+ TI+E V+     K+ + D +L A
Sbjct: 1087 VIVYRYVARGTIEEKVMALKAGKAKLFDDVLGA 1119


>gi|167757228|ref|ZP_02429355.1| hypothetical protein CLORAM_02778 [Clostridium ramosum DSM 1402]
 gi|167703403|gb|EDS17982.1| hypothetical protein CLORAM_02778 [Clostridium ramosum DSM 1402]
          Length = 1078

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +  +EL   L  +N++     +   +  Q+        +          K+     +I  
Sbjct: 865  QVNKELQEQLNYDNVDRIAILAMLTRLRQICCEPRIIYDNISNI---SSKLSGCLDLIRN 921

Query: 66   A--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               N   +++   F S L                       ++    + ++      +  
Sbjct: 922  FLGNNQKVLLFSSFTSVLDLIAKELEKESITYYQLTGDTKKEERHRLVNQFQNDDTTVFL 981

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL      ++ F  WW++             R  + G +  V VY L+ +
Sbjct: 982  ISLKAGGTGLNLTA-AEAVIHFDPWWNMSAQ-----NQATDRAYRIGQENVVTVYKLVMK 1035

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            ++++E +L+    K  + D  + 
Sbjct: 1036 DSVEEKILELQNKKKNLADSFVE 1058


>gi|237735687|ref|ZP_04566168.1| SWF/SNF family helicase [Mollicutes bacterium D7]
 gi|229381432|gb|EEO31523.1| SWF/SNF family helicase [Coprobacillus sp. D7]
          Length = 847

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 21/203 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +  +EL   L  +N++     +   +  Q+        +          K+     +I  
Sbjct: 634 QVNKELQEQLNYDNVDRIAILAMLTRLRQICCEPRIIYDNISNI---SSKLSGCLDLIRN 690

Query: 66  A--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
              N   +++   F S L                       ++    + ++      +  
Sbjct: 691 FLGNNQKVLLFSSFTSVLDLIAKELEKESITYYQLTGDTKKEERHRLVNQFQNDDTTVFL 750

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL      ++ F  WW++             R  + G +  V VY L+ +
Sbjct: 751 ISLKAGGTGLNLTA-AEAVIHFDPWWNMSAQ-----NQATDRAYRIGQENVVTVYKLVMK 804

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           ++++E +L+    K  + D  + 
Sbjct: 805 DSVEEKILELQNKKKNLADSFVE 827


>gi|239615027|gb|EEQ92014.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis ER-3]
 gi|327349863|gb|EGE78720.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1260

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K QR  Y   L    + +       +        ++ N     + +   K+         
Sbjct: 709 KIQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKTLSKKSSYNYGSAS 768

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L             +     G T  K   
Sbjct: 769 KSGKMQIVKSLLELWRDTGHKTLLFAQHRIMLDILERFIKSLSGFKYQRMDGNTPIKLRQ 828

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 829 SMVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERSW 882

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 883 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|261188034|ref|XP_002620434.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis SLH14081]
 gi|239593445|gb|EEQ76026.1| DNA repair and recombination protein RAD26 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1260

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K QR  Y   L    + +       +        ++ N     + +   K+         
Sbjct: 709 KIQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKTLSKKSSYNYGSAS 768

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L             +     G T  K   
Sbjct: 769 KSGKMQIVKSLLELWRDTGHKTLLFAQHRIMLDILERFIKSLSGFKYQRMDGNTPIKLRQ 828

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 829 SMVDEFNNNPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERSW 882

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 883 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 926


>gi|170755011|ref|YP_001781230.1| SNF2 family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120223|gb|ACA44059.1| helicase, Snf2 family [Clostridium botulinum B1 str. Okra]
          Length = 1097

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + ++N    
Sbjct: 934  LVQEGVDEGKKILLFSQFTSVLKNISRLLKKECIEYFYLDGSTNASERIKLVDKFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|326798503|ref|YP_004316322.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326549267|gb|ADZ77652.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 970

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y K + E    L  +++                K  QLAN     DE+   +    E 
Sbjct: 749 EYYEKIKSEYRNVLLEQSLDELMVKSQIQVLQGLTKLRQLANHPRMVDEDYEGESGKFEN 808

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNE 106
           +      +       +++   F   L   ++ F           G T +++       N 
Sbjct: 809 VVHTLDSVLSR-GHKVLIFSQFVKQLEIFRRHFDKKKIRYAYLDGSTRNREDVVNDFRNN 867

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            ++ L      + G GLNL    + +     WW+    QQ I+R       + G  + VF
Sbjct: 868 EEVKLFLISIKAGGVGLNL-IEADYVFILDPWWNPAVEQQAIDR-----SHRIGQTKNVF 921

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +Y  I +++++E +L     K TI + L+
Sbjct: 922 IYKFITKDSVEEKILALQDRKKTIANQLI 950


>gi|327183628|gb|AEA32075.1| Non-specific serine/threonine protein kinase [Lactobacillus
            amylovorus GRL 1118]
          Length = 1179

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 34/226 (15%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++ +      F   ++  K  ++        +  H      +K+K
Sbjct: 958  LYHLQMNKIIAQLNGQDDDDFKKFRFQILAQITKLREICCDPHLLYDNYH---GKSDKLK 1014

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    N   I++   F S L                       +K    IQ +N
Sbjct: 1015 ATIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1074

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++       E     R  + G K +
Sbjct: 1075 SLKQPGVFLISLKAGGTGINLTS-ADVVIHYDPWWNIAA-----ENQATDRAHRIGQKNS 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-------ALKKETI 203
            V +Y ++ Q+TI+E +++  + K+ +   +LN       A+ +E +
Sbjct: 1129 VKIYKMVTQDTIEERIIKLQQKKAELAQAILNNKDMANAAMNREDL 1174


>gi|282880921|ref|ZP_06289612.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
 gi|281305144|gb|EFA97213.1| SNF2 family N-terminal domain protein [Prevotella timonensis CRIS
            5C-B1]
          Length = 1254

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 21/209 (10%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +  Y   +++       E     ++ S+  K  Q+A      D      +    K+    
Sbjct: 1036 LAMYELHRKKAEELALAEEGVKLSTLSEITKLRQMACSISLVD---KTWKKTSSKLSTFI 1092

Query: 61   VIIEKAN--AAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             + E  N      +V   F S L                      + K    + E+ +G 
Sbjct: 1093 ALAESLNDSGGRALVFSQFTSFLAEVRQVMDKIKLPYLYLDGATPIKKREEIVDEFQKGN 1152

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P       + G GLNL    N ++    WW+    Q         R  + G +  V VY
Sbjct: 1153 YPFFLISLKAGGLGLNLTA-ANYVIHLDPWWNPAIEQ-----QATDRAYRIGQRNDVTVY 1206

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LIAQ+TI+E +++  +TK  + D LL  
Sbjct: 1207 HLIAQHTIEEKIIRLHKTKRDLADSLLEG 1235


>gi|255974902|ref|ZP_05425488.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|307278760|ref|ZP_07559826.1| protein, SNF2 family [Enterococcus faecalis TX0860]
 gi|255967774|gb|EET98396.1| Snf2 family protein [Enterococcus faecalis T2]
 gi|306504566|gb|EFM73770.1| protein, SNF2 family [Enterococcus faecalis TX0860]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|269302635|gb|ACZ32735.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]
          Length = 1166

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 18/197 (9%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAA 69
                +G      +  +   +  Q+      +  +   +     K   L  ++     +  
Sbjct: 958  LVKQEGFERIHIHVLATLTRLKQICCHPAIFA-KDAPEPGDSAKYDMLMDLLSSLVDSGH 1016

Query: 70   PIIVAYHFNSDLARLQ---------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               V   +   L  ++           +  G T ++     Q   +  + +      + G
Sbjct: 1017 KTAVFSQYTKMLGIIKKDLESRGIPFVYLDGSTKNRLDLVNQFNEDPSLLVFLISLKAGG 1076

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  NTI+E +
Sbjct: 1077 TGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQSRSVSSYKLVTLNTIEEKI 1130

Query: 181  LQRLRTKSTIQDLLLNA 197
            L     K ++   ++N+
Sbjct: 1131 LTLQNRKKSLVKKVINS 1147


>gi|315174973|gb|EFU18990.1| protein, SNF2 family [Enterococcus faecalis TX1346]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|229544926|ref|ZP_04433651.1| Snf2 family helicase [Enterococcus faecalis TX1322]
 gi|229309818|gb|EEN75805.1| Snf2 family helicase [Enterococcus faecalis TX1322]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257416863|ref|ZP_05593857.1| Snf2 family protein [Enterococcus faecalis AR01/DG]
 gi|257158691|gb|EEU88651.1| Snf2 family protein [Enterococcus faecalis ARO1/DG]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257090879|ref|ZP_05585240.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312902516|ref|ZP_07761722.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|256999691|gb|EEU86211.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310634186|gb|EFQ17469.1| protein, SNF2 family [Enterococcus faecalis TX0635]
 gi|315579675|gb|EFU91866.1| protein, SNF2 family [Enterococcus faecalis TX0630]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|307276930|ref|ZP_07558040.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|306506353|gb|EFM75513.1| protein, SNF2 family [Enterococcus faecalis TX2134]
 gi|315143788|gb|EFT87804.1| protein, SNF2 family [Enterococcus faecalis TX2141]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257420085|ref|ZP_05597079.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257161913|gb|EEU91873.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 1065

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|255971908|ref|ZP_05422494.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|312953715|ref|ZP_07772550.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|255962926|gb|EET95402.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|295113640|emb|CBL32277.1| Superfamily II DNA/RNA helicases, SNF2 family [Enterococcus sp. 7L76]
 gi|310628362|gb|EFQ11645.1| protein, SNF2 family [Enterococcus faecalis TX0102]
 gi|315149934|gb|EFT93950.1| protein, SNF2 family [Enterococcus faecalis TX0012]
 gi|315151814|gb|EFT95830.1| protein, SNF2 family [Enterococcus faecalis TX0031]
 gi|315159334|gb|EFU03351.1| protein, SNF2 family [Enterococcus faecalis TX0312]
 gi|323481616|gb|ADX81055.1| SNF2-type helicase [Enterococcus faecalis 62]
          Length = 1065

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257079857|ref|ZP_05574218.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294780417|ref|ZP_06745783.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|307269625|ref|ZP_07550961.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|256987887|gb|EEU75189.1| Snf2 family protein [Enterococcus faecalis JH1]
 gi|294452517|gb|EFG20953.1| SNF2 family N-terminal domain protein [Enterococcus faecalis PC1.1]
 gi|306514042|gb|EFM82627.1| protein, SNF2 family [Enterococcus faecalis TX4248]
 gi|329570678|gb|EGG52395.1| protein, SNF2 family [Enterococcus faecalis TX1467]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|256957920|ref|ZP_05562091.1| Snf2 family protein [Enterococcus faecalis DS5]
 gi|256948416|gb|EEU65048.1| Snf2 family protein [Enterococcus faecalis DS5]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257087662|ref|ZP_05582023.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300861266|ref|ZP_07107353.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|307288690|ref|ZP_07568670.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|256995692|gb|EEU82994.1| Snf2 family protein [Enterococcus faecalis D6]
 gi|300850305|gb|EFK78055.1| SNF2 family N-terminal domain protein [Enterococcus faecalis TUSoD
            Ef11]
 gi|306500356|gb|EFM69693.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|315025539|gb|EFT37471.1| protein, SNF2 family [Enterococcus faecalis TX2137]
 gi|315035196|gb|EFT47128.1| protein, SNF2 family [Enterococcus faecalis TX0027]
 gi|315165356|gb|EFU09373.1| protein, SNF2 family [Enterococcus faecalis TX1302]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|229549191|ref|ZP_04437916.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
 gi|229305428|gb|EEN71424.1| Snf2 family helicase [Enterococcus faecalis ATCC 29200]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|227519520|ref|ZP_03949569.1| Snf2 family helicase [Enterococcus faecalis TX0104]
 gi|227073045|gb|EEI11008.1| Snf2 family helicase [Enterococcus faecalis TX0104]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|29377168|ref|NP_816322.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227554179|ref|ZP_03984226.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256763318|ref|ZP_05503898.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256963798|ref|ZP_05567969.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|257084340|ref|ZP_05578701.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257421693|ref|ZP_05598683.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|307271745|ref|ZP_07553016.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|312900055|ref|ZP_07759372.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|29344634|gb|AAO82392.1| Snf2 family protein [Enterococcus faecalis V583]
 gi|227176678|gb|EEI57650.1| Snf2 family helicase [Enterococcus faecalis HH22]
 gi|256684569|gb|EEU24264.1| Snf2 family protein [Enterococcus faecalis T3]
 gi|256954294|gb|EEU70926.1| Snf2 family protein [Enterococcus faecalis HIP11704]
 gi|256992370|gb|EEU79672.1| Snf2 family protein [Enterococcus faecalis Fly1]
 gi|257163517|gb|EEU93477.1| Snf2 family protein [Enterococcus faecalis X98]
 gi|306511623|gb|EFM80622.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|311292812|gb|EFQ71368.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|315155557|gb|EFT99573.1| protein, SNF2 family [Enterococcus faecalis TX0043]
 gi|315573810|gb|EFU86001.1| protein, SNF2 family [Enterococcus faecalis TX0309B]
 gi|315580246|gb|EFU92437.1| protein, SNF2 family [Enterococcus faecalis TX0309A]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|327535910|gb|AEA94744.1| Snf2 family protein [Enterococcus faecalis OG1RF]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|313618637|gb|EFR90589.1| SNF2 family helicase [Listeria innocua FSL S4-378]
          Length = 208

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN 78
           E     +   +  Q+      + E    +     K+  L   I+  + N   I++   F 
Sbjct: 3   ERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQTARENGKRILIFSQFT 59

Query: 79  SDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
             LA ++                         +  +NEG+  +      + G GLNL  G
Sbjct: 60  GMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNEGENDIFLISLKAGGTGLNL-VG 118

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ + LWW+       +E     R  + G KR V V+ +I + TI+E +    + K 
Sbjct: 119 ADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFDLQKKKQ 173

Query: 189 TIQDLLLN 196
            + D L+ 
Sbjct: 174 ALVDELIQ 181


>gi|256853990|ref|ZP_05559355.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|307290304|ref|ZP_07570220.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|256710933|gb|EEU25976.1| Snf2 family protein [Enterococcus faecalis T8]
 gi|306498725|gb|EFM68226.1| protein, SNF2 family [Enterococcus faecalis TX0411]
 gi|315030488|gb|EFT42420.1| protein, SNF2 family [Enterococcus faecalis TX4000]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|256419642|ref|YP_003120295.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256034550|gb|ACU58094.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 1250

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 17/195 (8%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
              + QG            +K  Q+ +     +E + +     +  +    + E  +   +
Sbjct: 1042 VIEDQGMERSQLTILQGLMKLRQICDSPAILNEAEQYPNHSVKLHELTREMSENISNHKV 1101

Query: 72   IVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++   F                  +         +++             +      + G
Sbjct: 1102 LIFSQFLGMLGLIREKLQHMKVPFEYFDGSTSATERERAIQNFQTNDDCRVFLISLKAGG 1161

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    + +     WW+    QQ I+R       + G  + +F Y +I ++T++E +
Sbjct: 1162 VGLNLTA-ADYVYIVDPWWNPAVEQQAIDR-----THRIGQTKNIFAYRMICKDTVEEKI 1215

Query: 181  LQRLRTKSTIQDLLL 195
            LQ    K ++   ++
Sbjct: 1216 LQLQERKKSLVKEII 1230


>gi|315170383|gb|EFU14400.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|315168675|gb|EFU12692.1| protein, SNF2 family [Enterococcus faecalis TX1341]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|116627171|ref|YP_819790.1| SNF2 family DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116100448|gb|ABJ65594.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus
            thermophilus LMD-9]
          Length = 1031

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 5    HKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q+ L      E         S   +  Q+ +    + +          K+ +L  ++
Sbjct: 815  QQMQQGLISASDQEINRRKVEILSGITRLRQICDTPALFMDYAG----DSGKLDSLRDLL 870

Query: 64   --EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K +   +++   F   L   +                   D      + +N+G    
Sbjct: 871  SQIKESDHRVLIFSQFRGMLDITEELLQELGISSYKLTGSTPSDSRHEMTRAFNQGSRDA 930

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+            ++R  + G K+ V V+ LI
Sbjct: 931  FLISLKAGGVGLNLT-GADTVILIDLWWNPAVEM-----QAISRAHRIGQKQNVEVFRLI 984

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             + TI+E +L+    K  +   +L+ 
Sbjct: 985  TRGTIEEKILELQEGKKNLVTTVLDG 1010


>gi|315162049|gb|EFU06066.1| protein, SNF2 family [Enterococcus faecalis TX0645]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|257081744|ref|ZP_05576105.1| Snf2 family protein [Enterococcus faecalis E1Sol]
 gi|256989774|gb|EEU77076.1| Snf2 family protein [Enterococcus faecalis E1Sol]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|256616806|ref|ZP_05473652.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
 gi|256596333|gb|EEU15509.1| Snf2 family protein [Enterococcus faecalis ATCC 4200]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|15896547|ref|NP_349896.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026382|gb|AAK81236.1|AE007827_4 Superfamily II DNA/RNA helicases, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510706|gb|ADZ22342.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1077

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 21/200 (10%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
            E   +    N       S   +  Q+        E+         KI AL  ++      
Sbjct: 866  EKRVEYDEFNKSKIEILSYITRLRQICLDPSVVMEDYT---GGSAKINALIELLNHSIDE 922

Query: 68   AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               I+V   F S L                             +Q++NEG   +      
Sbjct: 923  GHKILVFSQFTSVLKNIAERFREEKIKYSYLDGSINSKNRMNMVQDFNEGNNSVFLISLK 982

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    ++++ F  WW+       +E     R  + G K  V V  L+A+ TI+
Sbjct: 983  AGGTGLNLTS-ADVVIHFDPWWNPA-----VEEQATDRAHRIGQKNIVEVIKLVAKGTIE 1036

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E +++    K  + D LL+ 
Sbjct: 1037 EKIIRLQEEKKRLVDSLLSE 1056


>gi|168180252|ref|ZP_02614916.1| helicase, Snf2 family [Clostridium botulinum NCTC 2916]
 gi|182668714|gb|EDT80692.1| helicase, Snf2 family [Clostridium botulinum NCTC 2916]
          Length = 1097

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  KIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + E+N    
Sbjct: 934  LVQEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       IE     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----IEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|226948925|ref|YP_002804016.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
 gi|226844507|gb|ACO87173.1| helicase, Snf2 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1097

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  KIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSLIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + E+N    
Sbjct: 934  LVQEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       IE     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----IEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|70982085|ref|XP_746571.1| DNA repair protein Rhp26/Rad26 [Aspergillus fumigatus Af293]
 gi|66844194|gb|EAL84533.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus fumigatus
           Af293]
 gi|159122195|gb|EDP47317.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus fumigatus
           A1163]
          Length = 1214

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 68/219 (31%), Gaps = 28/219 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA------VYYDEEKHWKEVHDEKI 56
            Y  F +    +++                 ++ N        +   +  +       K+
Sbjct: 705 AYESFLKS--EEMESILKGRRQILYGVDILRKICNHPDLQNHKMQSHQSGYGNANKSGKM 762

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPCTIQ 102
           + ++ ++   +      ++       L               ++        ++     +
Sbjct: 763 QVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVRSLSGFNYRRMDGTTPIQNRQTMVDE 822

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+  I +        G G+NL  G + ++ +   W+        +     R  + G K
Sbjct: 823 FNNDPNIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRLGQK 876

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 877 RDVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 915


>gi|121714457|ref|XP_001274839.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
           1]
 gi|119402993|gb|EAW13413.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
           1]
          Length = 1221

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HD 53
           + Y  F R  ++   L+G                ++ N     + +    +V        
Sbjct: 704 EAYETFLRSEDMQSILKG----RRQVLYGVDILRKICNHPDLQNHKLESHQVGYGNGNRS 759

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDPC 99
            K++ ++ ++   +      ++       L               ++         +   
Sbjct: 760 GKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILEKFVNSLSGFNHRRMDGTTPIQHRQAM 819

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 820 VDEFNNDPNLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 873

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 874 GQKREVSVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 915


>gi|149280534|ref|ZP_01886651.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter
           sp. BAL39]
 gi|149228716|gb|EDM34118.1| superfamily II DNA/RNA helicase, SNF2 family protein [Pedobacter
           sp. BAL39]
          Length = 964

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 18/199 (9%)

Query: 8   QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +L   +                    QLAN  +  DE         E +      + K
Sbjct: 753 RNDLLSSMDDGTYAKKQVQLLQGLTALRQLANHPLMIDESYESDSGKFENVIHTLDNVLK 812

Query: 66  ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F   L+  +  F           G T ++     +      + +     
Sbjct: 813 -GGHKVLIFSQFVKHLSIFRNYFEKEQIPFSYLDGSTKNRGEIVAEFQENKDLKVFLISI 871

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + +     WW+    QQ I+R       + G  + VF+Y  IA++T+
Sbjct: 872 KAGGVGLNLTQ-ADYVFILDPWWNPAVEQQAIDR-----SHRIGQDKKVFIYKFIAKDTV 925

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +L     K T+ + L+
Sbjct: 926 EEKILALQNRKKTLANALI 944


>gi|251778792|ref|ZP_04821712.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
 gi|243083107|gb|EES48997.1| SWI/SNF family helicase [Clostridium botulinum E1 str. 'BoNT E
            Beluga']
          Length = 1086

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y ++ ++L     +            S   K  Q+        E          KI A
Sbjct: 864  KTYSEYAKDLIQKKVEDDEFKNSKIEILSYITKLRQICLDPSVIMENYLGT---SGKIDA 920

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            L  I++ +  +   I+V   F S L            L        +       + ++NE
Sbjct: 921  LLEILDHSISSGHKILVFSQFTSVLKNIGNLLKENNILFSYLDGSVSSINRMRMVDDFNE 980

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL    +I++ F  WW+       +E     R  + G +  V 
Sbjct: 981  GENNVFLVSLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQATDRAHRIGQENTVE 1034

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIAQ TI+E +++   +K  + D +L  
Sbjct: 1035 VIKLIAQGTIEEKIVELQDSKRKLIDTILGD 1065


>gi|315148655|gb|EFT92671.1| protein, SNF2 family [Enterococcus faecalis TX4244]
          Length = 1065

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+ V
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKKVV 1012

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V+ +IA+ T++E +    + K  +   ++   +++
Sbjct: 1013 EVWRMIAEGTVEEKMNSLQQEKRELFQKVIQGNEEQ 1048


>gi|296813433|ref|XP_002847054.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
           113480]
 gi|238842310|gb|EEQ31972.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
           113480]
          Length = 1233

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGA--------VYYDEEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 675 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKTLSLKTDYNYGSGA 734

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK-DP 98
              K++ ++ ++   +      ++       L           R       G T  K   
Sbjct: 735 KSGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDILERFIRGFDRFNYRRMDGNTPIKVRQ 794

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 795 TMVDEFNNDPSLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 848

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|227501655|ref|ZP_03931704.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227077680|gb|EEI15643.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 1009

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y     E+   L+     +      +   +  Q+ N   +Y  +     +       K+
Sbjct: 778 LYKALVNEVKKSLEDATGISKRGIVLASLTRIKQICNHPAHYLGDDSPVVIKGKHRSGKV 837

Query: 57  KALEVIIE--KANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           K L  I++    +   +++   + +            L         G T +K    +++
Sbjct: 838 KELMRIVDAATESGERLLIFTQYKAFGDILQPYLSGQLGHEIPFLHGGVTKNKRDQMVED 897

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +     +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 898 FQADDGPQAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 951

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 952 RNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 989


>gi|315303447|ref|ZP_07874044.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
 gi|313628192|gb|EFR96728.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
          Length = 1072

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 25/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y  +  ++  DL+  +  A        +   +  Q+      + E    +     K+  
Sbjct: 845  IYLAYLEKIQADLEESSGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQ 901

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQ---------KAFPQGRTLDK-DPCTIQEWNE 106
            L   I+  + N   I++   F   LA ++           +  G+T  +     +  +NE
Sbjct: 902  LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPSRTRLDMVNSFNE 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G KR V 
Sbjct: 962  GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQ 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ +I + TI+E +    + K  + D L+ 
Sbjct: 1016 VFRMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|283456215|ref|YP_003360779.1| helicase [Bifidobacterium dentium Bd1]
 gi|283102849|gb|ADB09955.1| Helicase [Bifidobacterium dentium Bd1]
          Length = 1274

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L        N       ++     +L         +         K+
Sbjct: 1052 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKN---GSAKL 1108

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            +A++ ++         +++   F S L  +            A        K    + E+
Sbjct: 1109 EAIDDLVANCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVDEF 1168

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P+      +   GLNL  G ++++    WW+     +  +     R  + G  + 
Sbjct: 1169 NGDDAPVFLISLKAGNTGLNL-VGASVVIHADPWWN-----EAAQNQATDRAHRIGQTQD 1222

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1223 VNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1255


>gi|171742723|ref|ZP_02918530.1| hypothetical protein BIFDEN_01837 [Bifidobacterium dentium ATCC
            27678]
 gi|171278337|gb|EDT45998.1| hypothetical protein BIFDEN_01837 [Bifidobacterium dentium ATCC
            27678]
          Length = 1283

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L        N       ++     +L         +         K+
Sbjct: 1061 KLYAAHEQRLRAALTKTRDADFNTSRIRILAEFTLLRELCCDPRLVYADAKN---GSAKL 1117

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
            +A++ ++         +++   F S L  +            A        K    + E+
Sbjct: 1118 EAIDDLVANCMDEGKKVLIFSQFTSFLDLIGVRLAEHGVAFHAITGETPKRKRVELVDEF 1177

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N    P+      +   GLNL  G ++++    WW+     +  +     R  + G  + 
Sbjct: 1178 NGDDAPVFLISLKAGNTGLNL-VGASVVIHADPWWN-----EAAQNQATDRAHRIGQTQD 1231

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+  R KS +     + 
Sbjct: 1232 VNVYRIVAKDTIEERMLKLQRDKSRLARQFTDG 1264


>gi|149639471|ref|XP_001508174.1| PREDICTED: similar to hCG32740 [Ornithorhynchus anatinus]
          Length = 968

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------D 43
           + Y  F   +E+Y  L GE           +   ++ N    +                +
Sbjct: 410 EVYQNFIDSKEVYSILSGE----MQIFPGLMALRKMCNHPDLFSGGPKILKNVPDDELEE 465

Query: 44  EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQG 91
           E++        K+  +E ++         +++       L  L+                
Sbjct: 466 EDQFGYWKRSGKMIVVESLLKIWHKQGHRVLLFSQSRQMLHILEVFLRGQKYSYLKMDGT 525

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I  +N +  I +        G G+NL  G N ++ +   W+        + 
Sbjct: 526 TTIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DT 579

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 580 QARERAWRIGQKRQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 630


>gi|288555411|ref|YP_003427346.1| helicase Snf2 family [Bacillus pseudofirmus OF4]
 gi|288546571|gb|ADC50454.1| helicase Snf2 family [Bacillus pseudofirmus OF4]
          Length = 1064

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 27/219 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y    ++L  D+                 +   K  Q+        EE    EV   K
Sbjct: 841  KYYLAQVKQLRSDVDDAISSDQFQKKRIEILAGLTKLRQICCHPRLVSEED---EVESGK 897

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            +  L   +E+       +++   F S LA                       +      +
Sbjct: 898  LLRLMEYVEEGMEAGQRMVIFSQFTSMLAIIRAEFEERGWEFFYLDGQTPAVERLRLADQ 957

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  L        G       GG+ ++ +  WW+       IE     R  + G  +
Sbjct: 958  FNQGEKSLFLVSLK-AGGTGLNLTGGDTVILYDTWWNPA-----IEEQAADRVYRFGQTK 1011

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             V V  LIA  TI+E +L     K  + D ++   + + 
Sbjct: 1012 NVQVIKLIANGTIEEKILALHEKKKALVDAVIQPGEAQM 1050


>gi|330932428|ref|XP_003303771.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
 gi|311319996|gb|EFQ88126.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
          Length = 1250

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 28/192 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEV--------HDEKIKALEVII--EKANAAPIIVAYHFNSDL 81
             ++ N     + +   K+            K++ ++ ++   K      ++       L
Sbjct: 728 LRKICNHPDLTEHKTLSKKPGYDYGNPNRSGKMQVVKELLSLWKKGGHKTLLFAQHRIML 787

Query: 82  ARLQ----------KAFPQGRTLDK-DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGG 129
             LQ               G T  K     + E+N    + +        G G+NL  G 
Sbjct: 788 DILQKFVSQLPDINWRRMDGETPIKDRQNLVDEFNNSPDLHVFLLTTKVGGLGVNLT-GA 846

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           N ++ +   W+        +     R  + G KR V +Y L++  TI+E +  R   K  
Sbjct: 847 NRVIIYDPDWNPST-----DIQARERSWRLGQKREVEIYRLMSAGTIEEKIYHRQIFKQF 901

Query: 190 IQDLLLNALKKE 201
           + + +L   K+ 
Sbjct: 902 LTNKVLKDPKQR 913


>gi|42520462|ref|NP_966377.1| SNF2 family helicase [Wolbachia endosymbiont of Drosophila
            melanogaster]
 gi|42410201|gb|AAS14311.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
            melanogaster]
          Length = 1175

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K        ++                   Q+ N    + ++K        K++ LE
Sbjct: 948  LYQKVVDTTMEKIEKSEGIERKGLIFKLINALKQICNHPSQFGKKKRASIEQSGKMQMLE 1007

Query: 61   VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNE- 106
             I+          ++   +                        G +       I ++   
Sbjct: 1008 EILISIGEVAEKSLIFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNL 1067

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +L     + G GLNL    N ++ + LWW+       +E     R  + G +R V 
Sbjct: 1068 FQSNILIVSLKAGGTGLNLTA-ANHVIHYDLWWNPA-----VEAQATDRAYRIGQERNVM 1121

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L++  T +E + + +++K  + +L +++ +
Sbjct: 1122 VYRLLSTGTFEERIDEMIQSKKELANLTISSGE 1154


>gi|326797956|ref|YP_004315775.1| SNF2-related protein [Sphingobacterium sp. 21]
 gi|326548720|gb|ADZ77105.1| SNF2-related protein [Sphingobacterium sp. 21]
          Length = 1121

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            + Y  +++E    +  +  E  +          ++  Q+ N  +   ++        +  
Sbjct: 897  RIYDVYEKEFRSYISAQTEEELSNKSAVVLKGLMRLRQICNSPLLLKDKYSNVPNAAKIE 956

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN- 105
              +E I +++    I++   +   L  ++    +             +      I+++  
Sbjct: 957  WLIEEIGQRSVQHKILLFSQYVHMLDLVEDQLHKQGLQTLKMTGSTKVKDREGLIEQFKL 1016

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +G++ +        G GLNL    + +     WW+     Q I+RI      + G K+ V
Sbjct: 1017 DGRVKVFLMSLKVGGVGLNLTE-ADYVYLIDPWWNPAVEDQAIDRI-----YRMGQKKNV 1070

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                LI + TI+E VLQ  ++KS +   L++++
Sbjct: 1071 IAVRLICKETIEEKVLQLQQSKSELFTKLIDSI 1103


>gi|313632979|gb|EFR99905.1| DNA/RNA helicase protein [Listeria seeligeri FSL N1-067]
          Length = 1071

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 21/204 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLAESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   +++   F   LA ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRLLIFSQFTGMLAIIRRKLEEDGQTFFYMDGKTPAKTRLDMVNSFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +    + K  + D L+ 
Sbjct: 1022 KGTIEERIFDLQKKKQALVDELIQ 1045


>gi|302652597|ref|XP_003018145.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
 gi|291181757|gb|EFE37500.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
          Length = 1240

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 690 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKILSTKTDYNYGSGA 749

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 750 KSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQ 809

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 810 SMVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 863

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 864 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 907


>gi|256425205|ref|YP_003125858.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
 gi|256040113|gb|ACU63657.1| SNF2-related protein [Chitinophaga pinensis DSM 2588]
          Length = 959

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 26/214 (12%)

Query: 2   KQYHKF----QRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y++     + +L   +    + A          +  Q+ N     ++E H       K
Sbjct: 736 KSYNRIRDMYKEKLLKQINESGMAASTIYVLEGLTRLRQICNAPQLVEQESHVT--SSVK 793

Query: 56  IKALEVIIEKANA-APIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           +  L   I +      ++V   F   L  + K+                 +     +Q++
Sbjct: 794 LDELMREISENTGAHKVLVFSQFTGMLQLIAKSMEGEGLPFLYLDGSTKAENRQQLVQQF 853

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + ++ +      + G GL L    + +     WW+    QQ I+R       + G + 
Sbjct: 854 QTDEQVRVFLISLKAGGVGLTLTA-ADYVYLVDPWWNPAAEQQAIDR-----THRIGQQN 907

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            VF Y +I +++++E +L     K  I D L++ 
Sbjct: 908 KVFAYKMICKDSVEEKILALQERKKMIADDLISE 941


>gi|325956842|ref|YP_004292254.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
 gi|325333407|gb|ADZ07315.1| Non-specific serine/threonine protein kinase [Lactobacillus
            acidophilus 30SC]
          Length = 1179

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 34/226 (15%)

Query: 3    QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             YH    ++   L G++ +      F   ++  K  ++        +  H      +K+K
Sbjct: 958  LYHLQMNKIIAQLNGQDDDDFKKFRFQILAQITKLREICCDPHLLYDNYH---GKSDKLK 1014

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    N   I++   F S L                       +K    IQ +N
Sbjct: 1015 ATIDLIKSNLENGHKILLFSQFTSMLDILQEKLAKLKVPTFMLTGSTPKEKRQEDIQHFN 1074

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K P +      + G G+NL    ++++ +  WW++       E     R  + G K +
Sbjct: 1075 SLKQPGVFLISLKAGGTGINLTS-ADVVIHYDPWWNIAA-----ENQATDRAHRIGQKNS 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-------ALKKETI 203
            V +Y ++ Q+T++E +++  + K+ +   +LN       A+ +E +
Sbjct: 1129 VKIYKMVTQDTVEERIIKLQQKKAELAQAILNNKDMANAAMNREDL 1174


>gi|116873076|ref|YP_849857.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|116741954|emb|CAK21078.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
            SLCC5334]
          Length = 1072

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y  +  ++  DL+  N  A        +   +  Q+      + E    +     K+  
Sbjct: 845  IYLAYLEKIQADLEESNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQ 901

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
            L   I+  + N   I++   F   LA ++                         +  +NE
Sbjct: 902  LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEEGHSLFYMDGKTPAKTRLDMVNAFNE 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G KR V 
Sbjct: 962  GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQ 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ +I + TI+E +    + K  + D L+ 
Sbjct: 1016 VFRMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|332173366|gb|AEE22620.1| SNF2-related protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1440

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 23/208 (11%)

Query: 4    YHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   +     ++      A          ++ VK  Q           +           
Sbjct: 1218 YEALRLNAIDNINQSGQHANASEQRIRMLAELVKLRQACCNPKLVM-AETTIPSAKLAAL 1276

Query: 58   ALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
               +   K N    ++   F            D     +         +   ++  +  G
Sbjct: 1277 DALLEELKLNNHKALIFSQFVGHLQLIKQHLEDKGFDYQYLDGSTPQKQRQASVNAFQRG 1336

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+       +E     R  + G  R V +
Sbjct: 1337 QGDIFLISLKAGGSGLNLTA-ADYVIHMDPWWNPA-----VEEQASDRAHRIGQLRPVTI 1390

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y LI QNTI+E ++   + K  + D LL
Sbjct: 1391 YRLITQNTIEEKIVALHKQKRDLADNLL 1418


>gi|67541879|ref|XP_664707.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
 gi|40742118|gb|EAA61308.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
 gi|259483574|tpe|CBF79076.1| TPA: DNA repair protein Rhp26/Rad26, putative (AFU_orthologue;
           AFUA_4G03840) [Aspergillus nidulans FGSC A4]
          Length = 1193

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGA------VYYDEEKHWKEVHD 53
           + Y  F    E+   L+G                ++ N        + Y +  +      
Sbjct: 680 QAYEAFLGSEEMQSILRG----RRQVLYGVDILRKICNHPDLQNHKLLYAKPNYGNPTKS 735

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCT 100
            K++ +  ++   K      ++       L  L            +       +      
Sbjct: 736 GKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQTM 795

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + E+N +  + +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 796 VDEFNKDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 849

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 GQKRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 891


>gi|240170156|ref|ZP_04748815.1| SNF2-related protein [Mycobacterium kansasii ATCC 12478]
          Length = 1077

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 69/212 (32%), Gaps = 22/212 (10%)

Query: 3    QYHK-FQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y K  QRE       L       F          Q+A        +     +   KI  
Sbjct: 859  LYDKRLQRERQKVLGLLDDIQRNRFTILKSLTVLRQMALHPGLV--DAAHDALVCAKIDV 916

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGK 108
            L   +          +V   F   L R++                    P  IQ++ EG 
Sbjct: 917  LVEQLRDVADGGHRALVFSQFTRFLGRVRDRLGAEGIDYCYLDGRTRNRPKVIQQFKEGT 976

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P+      + G GLNL    +       WW+     Q ++R       + G +R V VY
Sbjct: 977  APVFLISLKAGGFGLNLTE-ADYCFLLDPWWNPATETQAVDR-----THRIGQQRNVMVY 1030

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             LIA++TI+  V+     K+ +   +++    
Sbjct: 1031 RLIARDTIEAKVMALNARKAKLFASVIDDGNA 1062


>gi|289619967|emb|CBI53411.1| unnamed protein product [Sordaria macrospora]
          Length = 1172

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 33/222 (14%)

Query: 8   QRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------HDE 54
           QRE Y   L+ +++ A       S        ++ N     D                  
Sbjct: 671 QREAYELFLKSDDMTAILNRTRQSLYGIDILRKICNHPDLLDPRLKDDPSYQWGSTNKSG 730

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTI 101
           K+  ++ ++   K      ++       L  ++                   +      +
Sbjct: 731 KMAVVKSLLPMWKRLGHKTLLFCQGTQMLDIIEAFVRRQDGINYLRMDGKTPVKDRQTLV 790

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N    + +        G G NL  G N ++ F   W+        +     R  + G
Sbjct: 791 DQFNNNPDLHIFLLTTKVGGLGTNLT-GANRVIIFDPDWNPST-----DVQARERAWRLG 844

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            K+ V +Y L+   TI+E +  R   K  + + +L   K++T
Sbjct: 845 QKKEVTIYRLMTAGTIEEKIYHRQIFKQFLSNKVLKDPKQQT 886


>gi|300771567|ref|ZP_07081442.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761556|gb|EFK58377.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 960

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 26/211 (12%)

Query: 2   KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y K + E    L                     K  QLAN            E +  K
Sbjct: 739 ETYEKVKSEYRNALLNVNTEDKAKTSQITLLQGLTKLRQLANHP---KMIDDDFEGNSGK 795

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW 104
              +   +E        +++   F   L+  +  F           G T ++     +  
Sbjct: 796 FDLVLETLESVLHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGATKNRSEAVAEFQ 855

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 L      + G GLNL    + +     WW+    QQ ++R       + G  R+
Sbjct: 856 KNKNTKLFLISIKAGGVGLNL-IEADYVFILDPWWNPAVEQQAVDR-----SHRIGQTRS 909

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VF+Y  I ++T++E +L     K  I   L+
Sbjct: 910 VFIYKFITKDTVEEKILAMQNRKRGIAKSLI 940


>gi|227535766|ref|ZP_03965815.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244254|gb|EEI94269.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 960

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 26/211 (12%)

Query: 2   KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y K + E    L                     K  QLAN            E +  K
Sbjct: 739 ETYEKVKSEYRNALLNVNTEDKAKTSQITLLQGLTKLRQLANHP---KMIDDDFEGNSGK 795

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEW 104
              +   +E        +++   F   L+  +  F           G T ++     +  
Sbjct: 796 FDLVLETLESVLHVGNKVLIFSQFVKQLSIFRTYFEEKGIQYAYLDGATKNRSEAVAEFQ 855

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 L      + G GLNL    + +     WW+    QQ ++R       + G  R+
Sbjct: 856 KNKNTKLFLISIKAGGVGLNL-IEADYVFILDPWWNPAVEQQAVDR-----SHRIGQTRS 909

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VF+Y  I ++T++E +L     K  I   L+
Sbjct: 910 VFIYKFITKDTVEEKILAMQNRKRGIAKSLI 940


>gi|325118047|emb|CBZ53598.1| hypothetical protein NCLIV_033850 [Neospora caninum Liverpool]
          Length = 1613

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 36/221 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYDE--------EKHWK 49
           K Q++LY D+  +N+E  N+ S          ++  +  N    +D         E    
Sbjct: 458 KLQKKLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHM 517

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
                K+  L+ ++   KA  + +++       L  +                G    + 
Sbjct: 518 VEAAGKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTER 577

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       L      + G G+NL    ++++ F   ++ +     ++   + R
Sbjct: 578 QERIDEFNAEGSSKFLFLLSTRAGGLGINL-ATADVVILFDSDFNPQ-----MDLQAMDR 631

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V VY  +  +T++  +++R   K  +  L++ 
Sbjct: 632 AHRIGQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQ 672


>gi|327441412|dbj|BAK17777.1| superfamily II DNA/RNA helicase, SNF2 family [Solibacillus
           silvestris StLB046]
          Length = 925

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 4   YHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKIK 57
           Y  + ++    L+      +         K  QL N    +     E+ +       K+K
Sbjct: 695 YEGYIQDTLATLEELTGFEKKGRILKMLNKLKQLCNHPALFLKEPFEDANTMVSRSVKLK 754

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
            +  + ++   N    ++   +      +Q    +               ++    + ++
Sbjct: 755 RIIEMTKEIIDNGEQCLIFTQYIGMGNLIQHCLTELYNVEVPFLTGSMPKNQRDNLVDQF 814

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G+ P+      + G GLNL      ++    WW+       +E     R  + G  + 
Sbjct: 815 QAGEFPVFLLSLKAGGTGLNLTA-ATHVLHADRWWNPA-----VENQATDRAYRIGQTQF 868

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V V+  +   TI+E + + +  KS + + L+ + K
Sbjct: 869 VQVHKFVTIGTIEEKIDKMIAMKSALSEELIQSSK 903


>gi|327277378|ref|XP_003223442.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Anolis carolinensis]
          Length = 1049

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 404 VKIYLGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 463

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++ K     + ++V       L  L+             
Sbjct: 464 PPYTTDTHLVTNSGKMVALDKLLSKLKEQGSRVLVFSQMTRLLDILEDYCMWRGYEYCRL 523

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 524 DGQTPHEEREEAIDTFNAPNSRKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 578

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 579 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 630


>gi|308067058|ref|YP_003868663.1| Hypothetical helicase [Paenibacillus polymyxa E681]
 gi|305856337|gb|ADM68125.1| Hypothetical helicase [Paenibacillus polymyxa E681]
          Length = 987

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 73/238 (30%), Gaps = 41/238 (17%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHW------------ 48
            Y +  +EL   +Q            S   +  QL +      +E               
Sbjct: 740 LYDQIVKELMERMQKLEGIERKGAILSALTQLKQLCDHPALLTKEAPPDTAASGYSPSDL 799

Query: 49  --KEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRT 93
                   K++ +  ++++        ++   +             +L           +
Sbjct: 800 EAVISRSSKLERILAMVKELREEGERCLIFTQYIGMGQMLQRVLAQELQEPVLYLNGSTS 859

Query: 94  LDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  I ++    +P      +      + G GLNL    N +  F  WW+       
Sbjct: 860 KTARDRMIDQFQSHTLPPAEQPSVFILSLKAGGVGLNLTA-ANHVFHFDRWWNPA----- 913

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +E     R  + G  + V V+  I+  T++E + + L +K  + D ++ + +     +
Sbjct: 914 VENQATDRAYRMGQTKDVQVHKFISLGTLEERIDEMLESKQQLSDQIITSTEGWITEL 971


>gi|312196824|ref|YP_004016885.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311228160|gb|ADP81015.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 1282

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 22/210 (10%)

Query: 2    KQYH-KFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y  + QRE    L      N              QL+  A   D+ +    +   KI 
Sbjct: 1063 RLYQTQLQRERQKVLGLVNDLNRNRLTILRSLTLLRQLSLHAGLVDDGQAR--LPSAKID 1120

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEG 107
             L   +          +V   F   L +++        +              ++ +  G
Sbjct: 1121 TLLEQLTHVVAGGHRALVFSQFTGFLGKVRAELGDAGVEYCYLDGRTRDRADVVERFRSG 1180

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            K  +      + G GLNL    +       WW+        E   V R  + G  R V V
Sbjct: 1181 KASVFLISLKAGGFGLNLTE-ADYCFLLDPWWNPAT-----EAQAVDRTHRIGQTRNVLV 1234

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E V+     K+ +   +++ 
Sbjct: 1235 YRLVARDTIEEKVMALKARKARLFSGVIDD 1264


>gi|225630349|ref|YP_002727140.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225630743|ref|YP_002727534.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225592330|gb|ACN95349.1| helicase, SNF2 family [Wolbachia sp. wRi]
 gi|225592724|gb|ACN95743.1| helicase, SNF2 family [Wolbachia sp. wRi]
          Length = 1175

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K        ++                   Q+ N    + ++K        K++ LE
Sbjct: 948  LYQKVVDTTMEKIEKSEGIERKGLIFKLINALKQICNHPSQFGKKKRASIEQSGKMQMLE 1007

Query: 61   VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNE- 106
             I+          ++   +                        G +       I ++   
Sbjct: 1008 EILISIGEVAEKSLIFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNL 1067

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +L     + G GLNL    N ++ + LWW+       +E     R  + G +R V 
Sbjct: 1068 FQSNILIVSLKAGGTGLNLTA-ANHVIHYDLWWNPA-----VEAQATDRAYRIGQERNVM 1121

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L++  T +E + + +++K  + +L +++ +
Sbjct: 1122 VYRLLSTGTFEERIDEMIQSKKELANLTISSGE 1154


>gi|86741104|ref|YP_481504.1| SNF2-related [Frankia sp. CcI3]
 gi|86567966|gb|ABD11775.1| SNF2-related [Frankia sp. CcI3]
          Length = 1163

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 19/207 (9%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y + +R+    L    N   F          QL+  A   D+  H  ++   KI AL 
Sbjct: 947  QTYLQRERQKVLGLVDDMNRNRFTILRSLTLLRQLSLHAGLVDD--HHADLPCAKIDALF 1004

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIP 110
              +     +    +V   F   L ++++                      ++ +  G  P
Sbjct: 1005 EQLTDVVDSGHRALVFSQFTGFLGKVRERLSALGVEHCYLDGRTRDRSTVLERFKTGSAP 1064

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +       WW+    +Q ++R       + G  R V VY L
Sbjct: 1065 VFLVSLKAGGFGLNLTE-ADYCFLLDPWWNPATEEQAVDR-----THRIGQSRNVMVYRL 1118

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A++TI+E V+     K+ +   +++ 
Sbjct: 1119 VARDTIEEKVMAMKDRKARLFSSVMDD 1145


>gi|302509748|ref|XP_003016834.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
 gi|291180404|gb|EFE36189.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
          Length = 1220

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 670 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKILSTKTDYNYGSGA 729

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 730 KSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQ 789

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N    + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 790 SMVDEFNNNPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 843

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 844 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 887


>gi|194206164|ref|XP_001500332.2| PREDICTED: similar to DNA excision repair protein ERCC-6
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB) [Equus caballus]
          Length = 1461

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 29/213 (13%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y  F   +E+Y  L G+        S  V   ++ N   Y+        V        
Sbjct: 766 KVYQNFIDSKEVYGILNGD----MQVFSGLVALRKICNHPGYWKRSGKMIVVES------ 815

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGK 108
            + I       +++       L  L+                 T+      I  +N +  
Sbjct: 816 LLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTVASRQPLITRYNEDTS 875

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I +        G G+NL  G N ++ +   W+        +     R  + G K+ V VY
Sbjct: 876 IFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DTQARERAWRIGQKKQVTVY 929

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 930 RLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 962


>gi|325685916|gb|EGD27981.1| non-specific serine/threonine protein kinase [Lactobacillus
            delbrueckii subsp. lactis DSM 20072]
          Length = 1185

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHK----FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y       + ++  +       E     +   +  ++        E+   +    EK 
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE---SEKR 1018

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
             A   +I+        +++   F S L  L++                   +    +  +
Sbjct: 1019 LACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKAEEIGFLRIDGQTPKARRLTLVNVF 1078

Query: 105  N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N  +    +      + G GLNL  G + ++ +  WW++             R  + G +
Sbjct: 1079 NHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQ-----NQATDRAHRIGQE 1132

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY LIA++T++E +L     K  +   +L A
Sbjct: 1133 KKVTVYKLIAKDTVEEAILDLQEAKRQLAQGILTA 1167


>gi|169610587|ref|XP_001798712.1| hypothetical protein SNOG_08399 [Phaeosphaeria nodorum SN15]
 gi|160702104|gb|EAT84675.2| hypothetical protein SNOG_08399 [Phaeosphaeria nodorum SN15]
          Length = 1203

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 65/192 (33%), Gaps = 28/192 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEV--------HDEKIKALEVII--EKANAAPIIVAYHFNSDL 81
             ++ N     + +   K+            K++ ++ ++   K      ++       L
Sbjct: 694 LRKICNHPDLTEHKTLSKQPGYDYGAPNKSGKMQVVKELLSLWKKGGHKTLLFAQHRIML 753

Query: 82  AR------------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
                          ++   +    ++     +  N+  + +        G G+NL  G 
Sbjct: 754 DILQKFLDHIPEINYRRMDGETAIKNRQDLVDEFNNDPNLHVFLLTTKVGGLGVNLT-GA 812

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           N ++ +   W+        +     R  + G KR V +Y L++  TI+E +  R   K  
Sbjct: 813 NRVIIYDPDWNPST-----DIQARERSWRLGQKREVEIYRLMSAGTIEEKIYHRQIFKQF 867

Query: 190 IQDLLLNALKKE 201
           + + +L   K+ 
Sbjct: 868 LTNKVLKDPKQR 879


>gi|326523023|dbj|BAJ88557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1220

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 30/221 (13%)

Query: 5   HKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------D 53
            + +      L    +E       NS        ++ N     + E+  +          
Sbjct: 688 QEQRATYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREQAAQNPDYGNIERS 747

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
            K+K +E I+   K     +++       L              +         +    I
Sbjct: 748 GKMKVVEQILKVWKDQGHRVLLFAQTQQMLDILESFLTARDYQYRRMDGLTPPKQRMALI 807

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N   +I +        G G NL  G N ++ F   W+              R  + G
Sbjct: 808 DEFNNTDEIFIFILTTKVGGLGTNLT-GANRVIIFDPDWNPSTDM-----QARERAWRIG 861

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            KR V VY LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 862 QKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQR 902


>gi|194381160|dbj|BAG64148.1| unnamed protein product [Homo sapiens]
          Length = 863

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 144 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 199

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 200 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 259

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 260 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 313

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 314 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 363


>gi|104782726|ref|YP_609224.1| Snf2/Rad54 family helicase [Pseudomonas entomophila L48]
 gi|95111713|emb|CAK16437.1| helicase, SNF2/RAD54 family [Pseudomonas entomophila L48]
          Length = 1108

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 6    KFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALE 60
               +++  ++   G            +K  Q+            +  + +          
Sbjct: 884  AMDKKVREEIARSGAARSQIVILDALLKLRQVCCDLRLVKGTEIKGTFADKGKLGSLLEM 943

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLL 112
            +    +    +++   F S LA ++    +                  +Q++  G+  + 
Sbjct: 944  LEELLSEGRKVLLFSQFTSMLALIEFELEKRGVRYSLLTGDTRDRRAPVQQFQNGESDVF 1003

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ +  WW+        E     R  + G  + VFV+ LI 
Sbjct: 1004 LISLKAGGTGLNLTA-ADTVIHYDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLIT 1057

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + T++E +    + K+ +   LL+  + 
Sbjct: 1058 RGTVEEKIQLLQQEKAALAAGLLDGGQA 1085


>gi|300771853|ref|ZP_07081724.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761239|gb|EFK58064.1| Snf2 family protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1119

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 18/206 (8%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K  RE     +G+ I            K  Q+ N       E    E +  KI+ L 
Sbjct: 900  LYEKEFREFISATEGDEIRKSPMYVLKGLTKLRQICNSTKLLKTEDLSTEDNSAKIETLI 959

Query: 61   V-IIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIP 110
              I +      IIV   F S L  +QK         +   G+T ++D        +    
Sbjct: 960  EQIEDNIAYHKIIVFSQFVSMLQLIQKALSAKGIDASMLTGKTKNRDQVVHNFQQQEDNR 1019

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +++     WW+       +E   + R  + G ++ V    L
Sbjct: 1020 VFLISLKAGGTGLNLTA-ASLVYLVDPWWNPA-----VENQAIDRAYRIGQQQTVTAVRL 1073

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            I  +T++E +++  ++K+ +   L+ 
Sbjct: 1074 ITPDTVEEKMIKMQQSKNELASALIG 1099


>gi|148379559|ref|YP_001254100.1| helicase, Snf2 family [Clostridium botulinum A str. ATCC 3502]
 gi|153931492|ref|YP_001383937.1| SNF2 family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153937278|ref|YP_001387483.1| SNF2 family helicase [Clostridium botulinum A str. Hall]
 gi|148289043|emb|CAL83133.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927536|gb|ABS33036.1| helicase, Snf2 family [Clostridium botulinum A str. ATCC 19397]
 gi|152933192|gb|ABS38691.1| helicase, Snf2 family [Clostridium botulinum A str. Hall]
          Length = 1097

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + ++N    
Sbjct: 934  LVQEGVDEGKKILLFSQFTSVLKNISKLLKKECIEYFYLDGSTNASERIKLVDKFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V 
Sbjct: 994  VKIFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNS 1076


>gi|16800753|ref|NP_471021.1| hypothetical protein lin1685 [Listeria innocua Clip11262]
 gi|16414172|emb|CAC96916.1| lin1685 [Listeria innocua Clip11262]
          Length = 1072

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 25/210 (11%)

Query: 3    QYHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y  +  ++  DL+  N  A        +   +  Q+      + E    +     K+  
Sbjct: 845  IYLAYLEKIQADLEESNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQ 901

Query: 59   LEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE 106
            L   I+  + N   I++   F   LA ++                         +  +NE
Sbjct: 902  LFDTIQTARENGKRILIFSQFTGMLAIIRRKLEEDGQPLFYMDGKTPAKTRLDMVNAFNE 961

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G+  +      + G GLNL  G + ++ + LWW+       +E     R  + G KR V 
Sbjct: 962  GENDIFLISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQ 1015

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V+ +I + TI+E +    + K  + D L+ 
Sbjct: 1016 VFRMITKGTIEERIFDLQKKKQALVDELIQ 1045


>gi|213963570|ref|ZP_03391823.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           sputigena Capno]
 gi|213953850|gb|EEB65179.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           sputigena Capno]
          Length = 951

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 77/209 (36%), Gaps = 20/209 (9%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y + + ++   L    E I  FN+     K  Q++N  V  D E        +++ + 
Sbjct: 734 QWYEREKSKVRNQLLEASEPISEFNALQMLTKLRQISNHPVLADAESTIPSGKYQEVISY 793

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGK 108
              +  A     ++   F   L   +      +           T ++        N+  
Sbjct: 794 METLHTAQH-KALIFSSFVKHLELFEAWCKTHKIKYSKLTGATATHERKSQVEAFQNQED 852

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +   F    +   GLNL    + ++    WW+        ER  + R  + G +  V V 
Sbjct: 853 VSFFFISLKAGEVGLNLTK-ASYVLLLDPWWNP-----FSERQAIARAHRIGQENKVNVI 906

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++++I+E +++    K+ + + +++ 
Sbjct: 907 RFVSKDSIEEKIIKLQENKTELFENVIDE 935


>gi|325114415|emb|CBZ49972.1| hypothetical protein NCLIV_004490 [Neospora caninum Liverpool]
          Length = 1317

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 75/221 (33%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYY--------DEEKHWKEVH 52
           + Y     +    LQG          +  ++  +  N    +        D        +
Sbjct: 638 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFEGYESENADPFGEHVIEN 697

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
             K++  + ++ +        ++       +  L+                    +    
Sbjct: 698 AGKLRFCDRLLRRLIQEHRRCLIFTQMTKMIDILEDYCRIRMFKYCRIDGNTSGDERDRQ 757

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +N     IP+      + G G+NL    + ++ +   W+ +     ++   + R  +
Sbjct: 758 IEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----VDLQAMDRVHR 811

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K AV VY L+ ++TI++ +++R   K  +   ++   +
Sbjct: 812 IGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQQGR 852


>gi|311740659|ref|ZP_07714486.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304179|gb|EFQ80255.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1011

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y     ++  DLQ    I       +   +  Q+ N   +Y  +     +       K+
Sbjct: 780 LYKALVNQVKKDLQEATGINKRGLVLASLTRIKQICNHPAHYLGDNSPVTLKGKHRSGKV 839

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           K L  I+++   +   ++V   + +            L R       G + +K    +++
Sbjct: 840 KELMRIVDEATESGERLLVFTQYKAFGDILQPYLSDQLGREIPFLHGGVSKNKRDQMVED 899

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  E   P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 900 FQSEDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 953

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 954 RNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 991


>gi|255324485|ref|ZP_05365602.1| DNA/RNA helicase, SNF2 family [Corynebacterium tuberculostearicum
           SK141]
 gi|255298391|gb|EET77691.1| DNA/RNA helicase, SNF2 family [Corynebacterium tuberculostearicum
           SK141]
          Length = 1011

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y     ++  DLQ    I       +   +  Q+ N   +Y  +     +       K+
Sbjct: 780 LYKALVNQVKKDLQEATGINKRGLVLASLTRIKQICNHPAHYLGDNSPVTLKGKHRSGKV 839

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           K L  I+++   +   ++V   + +            L R       G + +K    +++
Sbjct: 840 KELMRIVDEATESGERLLVFTQYKAFGDILQPYLSDQLGRDIPFLHGGVSKNKRDQMVED 899

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  E   P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 900 FQSEDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 953

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 954 RNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 991


>gi|226360762|ref|YP_002778540.1| helicase [Rhodococcus opacus B4]
 gi|226239247|dbj|BAH49595.1| putative helicase [Rhodococcus opacus B4]
          Length = 1073

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L    +   F          QL+  A   D+   + +V   K+ 
Sbjct: 854  KVYDTHLQRERQKILGLLADVDKNRFTILQSLTLLRQLSLDAGLVDD--EYHDVPSAKVD 911

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
            AL   +          +V   F   L +++                  +    ++++ EG
Sbjct: 912  ALLEQLADVVAGGHRALVFSQFTGFLGKVRDRLDDAGIAHAYLDGATRRRGDVLRDFKEG 971

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +       WW+        E   V R  + G  R V V
Sbjct: 972  DAPVFLISLKAGGFGLNLTE-ADYCFILDPWWNPAT-----EAQAVDRAHRIGQTRNVMV 1025

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++TI++ V+     KS +   +++A
Sbjct: 1026 YRLIAKDTIEDKVMALKAKKSALFSSVMDA 1055


>gi|319745629|gb|EFV97930.1| Snf2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1032

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               Q     DL    IE     S   +  Q+ +    + +     +    K+++L  ++ 
Sbjct: 821  ESIQHSSDADLNRRKIE---ILSGITRLRQICDTPRLFMDY----DGESGKLESLRQLLT 873

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 874  QIKENGHRALIFSQFRGMLDIAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAF 933

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G K  V VY LI 
Sbjct: 934  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVYRLIT 987

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   TK  +   +L+ 
Sbjct: 988  RGTIEEKILEMQETKKHLVTTVLDG 1012


>gi|77411931|ref|ZP_00788262.1| Snf2 family protein [Streptococcus agalactiae CJB111]
 gi|77162028|gb|EAO73008.1| Snf2 family protein [Streptococcus agalactiae CJB111]
          Length = 1032

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               Q     DL    IE     S   +  Q+ +    + +     +    K+++L  ++ 
Sbjct: 821  ESIQHSSDADLNRRKIE---ILSGITRLRQICDTPRLFMDY----DGESGKLESLRQLLT 873

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 874  QIKENGHRALIFSQFRGMLDIAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAF 933

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G K  V VY LI 
Sbjct: 934  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVYRLIT 987

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   TK  +   +L+ 
Sbjct: 988  RGTIEEKILEMQETKKHLVTTVLDG 1012


>gi|296875956|ref|ZP_06900015.1| Snf2 family protein [Streptococcus parasanguinis ATCC 15912]
 gi|296433031|gb|EFH18819.1| Snf2 family protein [Streptococcus parasanguinis ATCC 15912]
          Length = 1032

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E N       S  ++  Q+ +    + E+    +    K+++L  ++
Sbjct: 815  KQIQDRVRSSSEEELNRSKVEILSGLMRLRQICDTPALFMEDY---QGDSGKLESLRDLL 871

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
               K     +++   F   L  L++   Q                       +N G+   
Sbjct: 872  GQIKDGDHRVLIFSQFRGMLDILEQEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHA 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY +I
Sbjct: 932  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEDQAIGRAHRMGQEQNVEVYRMI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 986  TRGTIEEKIQELQASKRHLVSTILDGTETR 1015


>gi|319949229|ref|ZP_08023314.1| SNF2-related protein [Dietzia cinnamea P4]
 gi|319437114|gb|EFV92149.1| SNF2-related protein [Dietzia cinnamea P4]
          Length = 818

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 22/212 (10%)

Query: 2   KQYH-KFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y  +  R+   L   L        +  +      +L   A   D       V   K  
Sbjct: 599 RIYERELARQRASLLALLDDFESNRISILAGLTVLRRLCLDASLVDP--DHLGVASAKTD 656

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEG 107
            L   + +        +V   F + L  +                +       + E+ EG
Sbjct: 657 ELIAALREVVAEGHRALVFSQFTTYLDTVVARLRDEGITVAHLDGSTTDRAGAVGEFTEG 716

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G + +     WW+        E   V R  + G  R V V
Sbjct: 717 GAQVFCLSLKAGGVGLNL-VGADYVFLLDPWWNPAT-----EAQAVDRAHRIGQTRPVLV 770

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y ++A++TI+E V++  + K+ +   +L++ +
Sbjct: 771 YRMVARDTIEERVVELQQRKAELFASVLDSGE 802


>gi|22537758|ref|NP_688609.1| Snf2 family protein [Streptococcus agalactiae 2603V/R]
 gi|76787127|ref|YP_330236.1| Snf2 family protein [Streptococcus agalactiae A909]
 gi|76798459|ref|ZP_00780697.1| Snf2 family protein [Streptococcus agalactiae 18RS21]
 gi|77408487|ref|ZP_00785225.1| Snf2 family protein [Streptococcus agalactiae COH1]
 gi|22534649|gb|AAN00482.1|AE014265_11 Snf2 family protein [Streptococcus agalactiae 2603V/R]
 gi|76562184|gb|ABA44768.1| Snf2 family protein [Streptococcus agalactiae A909]
 gi|76586193|gb|EAO62713.1| Snf2 family protein [Streptococcus agalactiae 18RS21]
 gi|77172929|gb|EAO76060.1| Snf2 family protein [Streptococcus agalactiae COH1]
          Length = 1032

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               Q     DL    IE     S   +  Q+ +    + +     +    K+++L  ++ 
Sbjct: 821  ESIQHSSDADLNRRKIE---ILSGITRLRQICDTPRLFMDY----DGESGKLESLRQLLT 873

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 874  QIKENGHRALIFSQFRGMLDIAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAF 933

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G K  V VY LI 
Sbjct: 934  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVYRLIT 987

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   TK  +   +L+ 
Sbjct: 988  RGTIEEKILEMQETKKHLVTTVLDG 1012


>gi|323359978|ref|YP_004226374.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
 gi|323276349|dbj|BAJ76494.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
          Length = 983

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 22/212 (10%)

Query: 3   QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +     ++++   L   + + F           LA      D+      +   K+  
Sbjct: 764 VYDRVLQRERQKVLGLLDDLDRQRFIVFRSLTLLRMLALAPSLVDDRDAH--LGSAKLDV 821

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGK 108
           L   + +        +V   F S L    +              +  +    +  +  G+
Sbjct: 822 LLERLVEVTAEGHRALVFSQFTSFLDMAAERLDAAGLAYAHLDGSTARRGDVVAGFRAGE 881

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+      + G GL L    + +     WW+        E   + R  + G  ++VFVY
Sbjct: 882 APVFLISLKAGGFGLTLTE-ADYVFVLDPWWNPAA-----EAQAIDRAHRIGQDKSVFVY 935

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            LIA  TI+E VL   R K+ + D +++  + 
Sbjct: 936 RLIAAGTIEEKVLALQRRKAALFDAVIDDGEA 967


>gi|167032695|ref|YP_001667926.1| non-specific serine/threonine protein kinase [Pseudomonas putida
            GB-1]
 gi|166859183|gb|ABY97590.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            GB-1]
          Length = 1105

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 18/207 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEV 61
             +  R+      G            +K  Q+            + +  +          +
Sbjct: 883  DQKVRDEIAR-NGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEML 941

Query: 62   IIEKANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                +    +++   F S L         R  +              ++++ +G   +  
Sbjct: 942  EELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVRQFQQGDSEVFL 1001

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI +
Sbjct: 1002 ISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLITR 1055

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
             T++E +    + K+ +   LL+  + 
Sbjct: 1056 GTVEEKIQLLQQEKAALAASLLDGGQA 1082


>gi|169826616|ref|YP_001696774.1| ATP-dependent helicase [Lysinibacillus sphaericus C3-41]
 gi|168991104|gb|ACA38644.1| Hypothetical ATP-dependent helicase [Lysinibacillus sphaericus
           C3-41]
          Length = 923

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKI 56
            Y  +  E    L+      +         K  QL N    Y     E+         K+
Sbjct: 695 LYEGYILETLDQLEELTGFQKKGRVLKMLSKLKQLCNHPALYLKEPFEDAQTMLARSAKL 754

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
           + +  +  +   N    ++   +      LQ    +                +    ++ 
Sbjct: 755 ERIVQMAAEIVDNGEQCLIFTQYIGMGQLLQHCLSELYNVDAPFLTGAMPKQQRDRLVEA 814

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G  P+      + G GLNL    N ++    WW+       +E     R  + G  +
Sbjct: 815 FQAGDFPIFILSLKAGGTGLNLTA-ANHVLHADRWWNPA-----VENQATDRAYRIGQTQ 868

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   TI+E + + L  KS + + L+ +
Sbjct: 869 FVQVHKFVTLGTIEEKIDKMLAQKSALSEELIQS 902


>gi|312868420|ref|ZP_07728620.1| SNF2 family N-terminal domain protein [Streptococcus parasanguinis
            F0405]
 gi|311096165|gb|EFQ54409.1| SNF2 family N-terminal domain protein [Streptococcus parasanguinis
            F0405]
          Length = 1032

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 5    HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             + Q  +    + E N       S  ++  Q+ +    + E+    +    K+++L  ++
Sbjct: 815  KQIQDRVRTSSEEELNRSKVEILSGLMRLRQICDTPALFMEDY---QGDSGKLESLRDLL 871

Query: 64   EKANA--APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
             +       +++   F   L  L+K   Q                       +N G+   
Sbjct: 872  GQIKDGEHRVLIFSQFRGMLDILEKEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHA 931

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY +I
Sbjct: 932  FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEDQAIGRAHRMGQEQNVEVYRMI 985

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + TI+E + +   +K  +   +L+  +  
Sbjct: 986  TRGTIEEKIQELQASKRHLVSTILDGTETR 1015


>gi|315041194|ref|XP_003169974.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
           118893]
 gi|311345936|gb|EFR05139.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
           118893]
          Length = 1226

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGA--------VYYDEEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 677 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKILSQKTDYNYGSGA 736

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 737 KSGKMQVVKSLLELWKETGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKARQ 796

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+              R  
Sbjct: 797 SMVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDM-----QARERAW 850

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 851 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 894


>gi|225682364|gb|EEH20648.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1236

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 704 KIQRSAYQAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA 763

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L             +     G T  K   
Sbjct: 764 KSGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQ 823

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N   +I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 824 SLVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 877

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 878 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 921


>gi|77405797|ref|ZP_00782881.1| Snf2 family protein [Streptococcus agalactiae H36B]
 gi|77175584|gb|EAO78369.1| Snf2 family protein [Streptococcus agalactiae H36B]
          Length = 1032

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               Q     DL    IE     S   +  Q+ +    + +     +    K+++L  ++ 
Sbjct: 821  ESIQHSSDADLNRRKIE---ILSGITRLRQICDTPRLFMDY----DGESGKLESLRQLLT 873

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 874  QIKENGHRALIFSQFRGMLDIAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAF 933

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G K  V VY LI 
Sbjct: 934  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVYRLIT 987

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   TK  +   +L+ 
Sbjct: 988  RGTIEEKILEMQETKKHLVTTVLDG 1012


>gi|58697007|ref|ZP_00372482.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536740|gb|EAL60000.1| helicase, SNF2 family [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 773

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K        ++                   Q+ N    + ++K        K++ LE
Sbjct: 546 LYQKVVDTTMEKIEKSEGIERKGLIFKLINALKQICNHPSQFGKKKRASIEQSGKMQMLE 605

Query: 61  VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNE- 106
            I+          ++   +                        G +       I ++   
Sbjct: 606 EILISIGEVAEKSLIFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNL 665

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +L     + G GLNL    N ++ + LWW+       +E     R  + G +R V 
Sbjct: 666 FQSNILIVSLKAGGTGLNLTA-ANHVIHYDLWWNPA-----VEAQATDRAYRIGQERNVM 719

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY L++  T +E + + +++K  + +L +++ +
Sbjct: 720 VYRLLSTGTFEERIDEMIQSKKELANLTISSGE 752


>gi|323454552|gb|EGB10422.1| hypothetical protein AURANDRAFT_10276 [Aureococcus anophagefferens]
          Length = 505

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 26/213 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVII 63
            R+      G+   AF + +      ++ N    Y      +         K+ AL+ ++
Sbjct: 288 VRKALAGDGGQQATAFRAIAA---LRKICNHPDLYGGPPEGEPPGAASRSSKLAALDAVL 344

Query: 64  --EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG-KIP 110
              KA    ++V     + L                   G        T   +N   K  
Sbjct: 345 VRWKAQGHRVLVFSQTIAMLDVLEALVVARGWRYGRMDGGTAPAARQATADAFNASSKTF 404

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L+     + G GL+L  G + +V +   W+ +      +     R  + G  + V +Y L
Sbjct: 405 LMLLTTRTGGVGLSL-VGADRVVLYDPDWNPQT-----DAQARERSWRLGQTKPVTIYRL 458

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +   TI+E +  R   K  + + +L+  K+  +
Sbjct: 459 VCAGTIEEKIYHRQIFKQALTNKVLSDAKQRRL 491


>gi|306835829|ref|ZP_07468826.1| SNF2/RAD54 family protein [Corynebacterium accolens ATCC 49726]
 gi|304568303|gb|EFM43871.1| SNF2/RAD54 family protein [Corynebacterium accolens ATCC 49726]
          Length = 1009

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
            Y     E+   L+     +      +   +  Q+ N   +Y  +     +       K+
Sbjct: 778 LYKALVNEVKKSLEDATGISKRGIVLASLTRIKQICNHPAHYLGDDSPVVIKGKHRSGKV 837

Query: 57  KALEVIIE--KANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
           K L  I++    +   +++   + +            L         G T +K    +++
Sbjct: 838 KELMRIVDAATESGERLLIFTQYKAFGDILQPYLSGQLGHEIPFLHGGVTKNKRDQMVED 897

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  E     +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 898 FQSEDGPQAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 951

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 952 RNVQVYKMITAGTLEESIQDILDGKTQLAGAVVGEGEG 989


>gi|322805910|emb|CBZ03475.1| swf/SNF family helicase [Clostridium botulinum H04402 065]
          Length = 424

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 204 RIYKVYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRVAME 260

Query: 62  IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
           ++++       I++   F S L                        +    + E+N    
Sbjct: 261 LVQEGVDEGKKILLFSQFTSVLKNISKLLKKECIEYFYLDGSTNASERIKLVNEFNKNSH 320

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V 
Sbjct: 321 VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNLVQVI 374

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+ + TI+E ++     K  + + ++N+
Sbjct: 375 KLVCKGTIEEKIIMLQEDKKELINNVMNS 403


>gi|296138942|ref|YP_003646185.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
 gi|296027076|gb|ADG77846.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
          Length = 958

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWK----EVHDEKI 56
            Y      L  +L+                +  Q+ N    Y ++        +    K+
Sbjct: 724 LYQAVLNRLVEELRRSEGMPRRGLVLASLTRLKQVCNHPAQYLDDGSPLLRRGQHRSGKV 783

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
           + L  I+E    +    +V   +      LQ                          ++ 
Sbjct: 784 ELLADILETVAADGERALVFTQYAEFARMLQPWLSGLLGAEVPVLDGSVPRRDRDAMVER 843

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  G   P+L A   S G GLNL    N +V    WW+       +E     R  + G  
Sbjct: 844 FQAGDGAPVLLATVKSGGTGLNLTA-ANHVVHVDRWWNPA-----VENQATDRAFRIGQT 897

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +AV V   +   T++E +   +  K  + D+ + 
Sbjct: 898 KAVQVRKFVCAGTLEERIDGVIAAKRELSDMTVQ 931


>gi|218187342|gb|EEC69769.1| hypothetical protein OsI_00025 [Oryza sativa Indica Group]
 gi|222617568|gb|EEE53700.1| hypothetical protein OsJ_00022 [Oryza sativa Japonica Group]
          Length = 1355

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 30/215 (13%)

Query: 11   LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
                L    +E       NS        ++ N     + E   +           K+K +
Sbjct: 827  YRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNPERSGKMKVV 886

Query: 60   EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
            E ++   K     +++       L  ++          +              I E+N  
Sbjct: 887  EQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMALIDEFNNT 946

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +I +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 947  DEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 1000

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VY LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 1001 VYRLITRGTIEEKVYHRQIYKHFLTNKVLKDPQQR 1035


>gi|119470636|ref|ZP_01613304.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
 gi|119446106|gb|EAW27384.1| putative DNA helicase with SNF2 domain [Alteromonadales bacterium
            TW-7]
          Length = 1048

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 21/203 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKA--LE 60
               + +L      + ++    A     +K  Q+       + +         K++     
Sbjct: 834  RALEEKLIDLFAEQGVQKSKLAFLEALLKLRQICCHPKLIEPDTQA---GSAKLEWLSTH 890

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNEGKIPLL 112
            + +  +    +I+   F S L  + K   +                  I E+  GK  + 
Sbjct: 891  LPLMLSLGRKVIIFSQFTSALDLIAKQLSELDINFSLLTGQTRHRDKVIDEFTSGKTSVF 950

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    + ++ F  WW+       +E+    R  + G    VFVY LI 
Sbjct: 951  LISLKAGGTGLNLTQ-ADTVIHFDPWWNPA-----VEKQATDRAYRIGQTNPVFVYKLIM 1004

Query: 173  QNTIDELVLQRLRTKSTIQDLLL 195
             ++I++ V +    K  + D L 
Sbjct: 1005 SHSIEQKVFKMQEDKQALVDALF 1027


>gi|25011706|ref|NP_736101.1| Snf2 family protein [Streptococcus agalactiae NEM316]
 gi|77414227|ref|ZP_00790389.1| Snf2 family protein [Streptococcus agalactiae 515]
 gi|24413246|emb|CAD47325.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159716|gb|EAO70865.1| Snf2 family protein [Streptococcus agalactiae 515]
          Length = 1032

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               Q     DL    IE     S   +  Q+ +    + +     +    K+++L  ++ 
Sbjct: 821  ESIQHSSDADLNRRKIE---ILSGITRLRQICDTPRLFMDY----DGESGKLESLHQLLT 873

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112
            +   N    ++   F   L   ++                  ++     + +N G     
Sbjct: 874  QIKENGHRALIFSQFRGMLDIAEREMVAMGLTTYKITGSTPANERHEMTRAFNAGSKDAF 933

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +V   LWW+            ++R  + G K  V VY LI 
Sbjct: 934  LISLKAGGVGLNLT-GADTVVLIDLWWNPAVEM-----QAISRAHRLGQKENVEVYRLIT 987

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + TI+E +L+   TK  +   +L+ 
Sbjct: 988  RGTIEEKILEMQETKKHLVTTVLDG 1012


>gi|221488451|gb|EEE26665.1| chromatin remodelling complex protein SNF2L, putative [Toxoplasma
           gondii GT1]
          Length = 1556

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y     +    L   +       +  ++  +  N    +D         E        
Sbjct: 445 KLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHMVEAA 504

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+  L+ ++   KA  + +++       L  +                G    +    I
Sbjct: 505 GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTERQERI 564

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            E+N       L      + G G+NL    +I++ F   ++ +     ++   + R  + 
Sbjct: 565 DEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQ-----MDLQAMDRAHRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY  +  +T++  +++R   K  +  L++   +
Sbjct: 619 GQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQKGR 658


>gi|313900256|ref|ZP_07833752.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312954965|gb|EFR36637.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 1117

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +  +EL  +L       F      ++  Q+        EE         K+KA   ++  
Sbjct: 902  QVNKELQQELDLVKTNRFQVLGMLMRLRQICCDPRLVYEEVSQ---PSSKLKACMELVSS 958

Query: 66   --ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               N   +++  +F S L                       ++    +Q++ + +  +  
Sbjct: 959  LVENDKSVLLFSNFTSMLDLIQVELQHLHIPYFRMDGSTGKEERRELVQKFQDKEKKVFL 1018

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                S G G+NL      ++ +  WW++       E     R  + G    V VY LI +
Sbjct: 1019 ISLKSGGTGINLTA-AEAVIHYDPWWNVSA-----ENQASDRAYRIGQNSRVQVYKLIMR 1072

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            NT++E +    + K  + D+ +   +   + +
Sbjct: 1073 NTVEERIQHLQQMKKELADIFVEENETNIMRM 1104


>gi|303315667|ref|XP_003067838.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107514|gb|EER25693.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1213

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K QR  Y   L    + A      +         ++ N     + +   ++         
Sbjct: 691 KLQRAAYEAFLSSNEMSAIMRGRRDVLFGVDILRKICNHPDLPEHKTLSQKANYNYGNSA 750

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKD 97
              K++ ++ ++   +      ++       L               ++         + 
Sbjct: 751 KSGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQ 810

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  N+  I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 811 GMVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DLQARERAW 864

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 865 RLGQKRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 908


>gi|322390087|ref|ZP_08063622.1| Snf2 family protein [Streptococcus parasanguinis ATCC 903]
 gi|321143214|gb|EFX38657.1| Snf2 family protein [Streptococcus parasanguinis ATCC 903]
          Length = 881

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 22/210 (10%)

Query: 5   HKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q  +    + E N       S  ++  Q+ +    + E+    +    K+++L  ++
Sbjct: 664 KQIQDRVRSSSEEELNRSKVEILSGLMRLRQICDTPALFMEDY---QGDSGKLESLRDLL 720

Query: 64  EKANA--APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
            +       +++   F   L  L++   Q                       +N G+   
Sbjct: 721 GQIKDGEHRVLIFSQFRGMLDILEQEIDQLGMTSFKITGSTPAKDRQEMTNAFNAGERHA 780

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL  G + ++   LWW+       +E   + R  + G ++ V VY +I
Sbjct: 781 FLISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEDQAIGRAHRMGQEQNVEVYRMI 834

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +   +K  +   +L+  +  
Sbjct: 835 TRGTIEEKIQELQASKRHLVSTILDGTETR 864


>gi|221508955|gb|EEE34524.1| chromatin remodelling complex protein SNF2L, putative [Toxoplasma
           gondii VEG]
          Length = 1551

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y     +    L   +       +  ++  +  N    +D         E        
Sbjct: 445 KLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHMVEAA 504

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+  L+ ++   KA  + +++       L  +                G    +    I
Sbjct: 505 GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTERQERI 564

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            E+N       L      + G G+NL    +I++ F   ++ +     ++   + R  + 
Sbjct: 565 DEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQ-----MDLQAMDRAHRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY  +  +T++  +++R   K  +  L++   +
Sbjct: 619 GQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQKGR 658


>gi|237833381|ref|XP_002365988.1| chromatin remodeling complex protein SNF2L, putative [Toxoplasma
           gondii ME49]
 gi|211963652|gb|EEA98847.1| chromatin remodeling complex protein SNF2L, putative [Toxoplasma
           gondii ME49]
          Length = 1556

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y     +    L   +       +  ++  +  N    +D         E        
Sbjct: 445 KLYADILSKNVEVLNAMSGSKTQMLNILMQLRKCCNHPYLFDGVEPGPPYVEGEHMVEAA 504

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+  L+ ++   KA  + +++       L  +                G    +    I
Sbjct: 505 GKMALLDKLLPRLKAEGSRVLLFSQMTRLLDIVDDYCRWRGFDYCRIDGGTPGTERQERI 564

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            E+N       L      + G G+NL    +I++ F   ++ +     ++   + R  + 
Sbjct: 565 DEFNAEGSKKFLFLLSTRAGGLGINL-ATADIVILFDSDFNPQ-----MDLQAMDRAHRI 618

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY  +  +T++  +++R   K  +  L++   +
Sbjct: 619 GQKKRVVVYRFVTGDTVEAKIVERAAKKLKLDSLVIQKGR 658


>gi|302340105|ref|YP_003805311.1| SNF2-related protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637290|gb|ADK82717.1| SNF2-related protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1046

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 26/212 (12%)

Query: 2    KQYHKFQRELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y + +  +  +++       G    A       ++  Q A   +  DE+       D 
Sbjct: 825  RFYTRLKESMRAEVKSLIDAKPGSLKVANAILMALLRLRQAAISPILLDEKPETSSKLDV 884

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEW 104
             I+ LE ++ +     +++   F   L                             I+ +
Sbjct: 885  VIQLLETLLAE--GHKVLIFSQFVKVLSLLRARLEAKEMEYAYLDGSLGTRAREQAIRSF 942

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +     WW+       +E   + R  + G +R 
Sbjct: 943  KNAKG-IFLISLKAGGTGLNLTE-ADYVFILDPWWNPA-----VESQAIDRSHRIGQRRP 995

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V  Y  IA  T++E +++    K  I + LL+
Sbjct: 996  VIAYKFIATGTVEERIIELQEQKRRIANELLS 1027


>gi|226289757|gb|EEH45241.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1236

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 704 KIQRSAYQAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA 763

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L             +     G T  K   
Sbjct: 764 KSGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQ 823

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N   +I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 824 SLVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 877

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 878 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 921


>gi|258517381|ref|YP_003193603.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257781086|gb|ACV64980.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 980

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 28/225 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y    + ++  L+     A      S  +K  QL +    +  +E          K++ 
Sbjct: 744 LYENTLQNMFERLEEAAGMARRGVILSTLMKLKQLCDHPALFLKEEVPSNIRERSLKLER 803

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWN 105
           L  ++EK        ++   F      +Q                G    +    I  + 
Sbjct: 804 LLEMVEKLRQEGDSCLIFTQFVGMGQMIQRLLQKELKEEVYFLYGGTPRARREEMITGFQ 863

Query: 106 E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                     +      + G GLNL    + +  F  WW+       +E     R  + G
Sbjct: 864 NFDTTKNPSNIFVLSLKAGGLGLNLTA-ASHVFHFDRWWNPA-----VENQATDRSHRIG 917

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +R V V+  I   T++E + + L  K  + + ++   +     +
Sbjct: 918 QQRHVQVHKFICLGTLEERIDEMLERKQGLNEQIVGGSEAWITEL 962


>gi|328543336|ref|YP_004303445.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
 gi|326413081|gb|ADZ70144.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 481

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 18/208 (8%)

Query: 2   KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y K + E+ C+++  + E     A  + +K  + +QLA        E        E +
Sbjct: 253 RLYDKMRDEMVCEIEAMSGEQYRAYASTALAKLTRLVQLACNPSLIFPEAEGTPAKFEAL 312

Query: 57  KALEVIIEKANAAPIIVAYHFNSDL-------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             +   I       +I+  ++   +             +    T ++         +  +
Sbjct: 313 DGVIEDILSVPGRKVILWSNYIRTIETLLARIPGAVAIYGGTPTSERQEIAASFQQDPDV 372

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A+PA+ G G  L    +  ++ SL W  + + Q  +R       + G    V    
Sbjct: 373 RVLIANPAAAGTGFTLTA-ASFTIYESLSWRYDHYAQSQDR-----NHRIGQTEPVTYLR 426

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           LIA +TI+E ++  L  KS +   LL  
Sbjct: 427 LIAADTIEEAIVVALERKSALARTLLGD 454


>gi|109088973|ref|XP_001107536.1| PREDICTED: DNA excision repair protein ERCC-6 [Macaca mulatta]
          Length = 1496

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 777 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 832

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 833 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 892

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 893 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 946

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 947 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 996


>gi|50551421|ref|XP_503184.1| YALI0D23287p [Yarrowia lipolytica]
 gi|49649052|emb|CAG81384.1| YALI0D23287p [Yarrowia lipolytica]
          Length = 1660

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 79/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
            K Y +  +     +      A  +      ++ ++  ++ N    ++E +     +    
Sbjct: 943  KLYQQMIKHNVLFIGEGVQGATKTGLKGLNNQVMQLRKICNHPFVFEEVEDLVNPNRLTN 1002

Query: 54   -------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
                    K + L+ I+ K       I++ +     +  ++               G   
Sbjct: 1003 DNLWRTAGKFELLDRILPKFKAAGHRILMFFQMTQIMDIMEDFMRLKGWQYLRLDGGTKS 1062

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + ++N    P         + G GLNLQ   + ++ +   W+  +     +   
Sbjct: 1063 EDRSGLLGKFNAPDSPYFAFLLSTRAGGLGLNLQT-ADTVIIYDTDWNPHQ-----DLQA 1116

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V +  LI +++++E +L+R   K  I   ++ A K
Sbjct: 1117 QDRAHRIGQTKEVRILRLITEDSVEENILERAHKKLDIDGKVIQAGK 1163


>gi|119178020|ref|XP_001240720.1| hypothetical protein CIMG_07883 [Coccidioides immitis RS]
          Length = 1198

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K QR  Y   L    + A      +         ++ N     + +   ++         
Sbjct: 676 KLQRAAYEAFLSSNEMSAIMRGRRDVLFGVDILRKICNHPDLPEHKTLSQKANYNYGNSA 735

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKD 97
              K++ ++ ++   +      ++       L               ++         + 
Sbjct: 736 KSGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQ 795

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  N+  I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 796 GMVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DLQARERAW 849

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 893


>gi|302308020|ref|NP_984796.2| AEL065Cp [Ashbya gossypii ATCC 10895]
 gi|299789257|gb|AAS52620.2| AEL065Cp [Ashbya gossypii ATCC 10895]
          Length = 1025

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 35/225 (15%)

Query: 6   KFQRELYCDLQGEN--IEAFN----SASKTVKCLQLANGA------VYYDEEKHWKEVHD 53
           +FQ+E Y         I+  N             ++ N            E         
Sbjct: 555 QFQKEKYLQFLNSEDMIKIKNGRRQVLYGIDILRKICNHPDLLERDFRKHEPSFGDPRRS 614

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DK 96
            K+  ++ ++   K      ++       L  L+                          
Sbjct: 615 GKMTVIKQLLLTWKKQGHKALLFTQSRQMLDILEAYISHKDPELAGLQYLRMDGTTNIAH 674

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N G   L        G G+NL  G N ++ F   W+        +     R 
Sbjct: 675 RQALVDRFNNGPYHLFLLTTRVGGLGVNLT-GANRIIIFDPDWNPST-----DLQARERA 728

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR V +Y L+   +I+E +  R   K  + + +L+  K++
Sbjct: 729 WRIGQKRDVTIYLLMVAGSIEEKIYHRQIFKQFLTNKVLSDPKQK 773


>gi|297491621|ref|XP_002698997.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6-like [Bos taurus]
 gi|296472015|gb|DAA14130.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6-like [Bos taurus]
          Length = 1006

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD---------------E 44
           K Y  F   +E+Y  L GE        S  V   ++ N    +                E
Sbjct: 242 KVYQNFIDSKEVYRILNGE----MQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGE 297

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 298 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTT 357

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +      I  +N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 358 AIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 411

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 412 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 461


>gi|190570762|ref|YP_001975120.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190357034|emb|CAQ54427.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 1178

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y +        ++                   Q+ N   ++ ++K        K++ LE
Sbjct: 951  LYQEVVNTTMKKIERSEGIERKGLILKLINALKQVCNHPSHFGKKKRASIEQSGKMQMLE 1010

Query: 61   VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW-NE 106
             I+   +      ++   +                          +       + ++ N 
Sbjct: 1011 EILIGISELAEKSLIFTQYTEMGEIIARLLEEKFESKVPFLHGSLSRKARDKMVNDFENS 1070

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +L     + G GLNL    N ++ + LWW+       +E     R  + G +R V 
Sbjct: 1071 FRSNILIVSLKAGGTGLNLTA-ANHVIHYDLWWNPA-----VEAQATDRAYRIGQERNVM 1124

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L++  T +E + + +++K  + +L +++ +
Sbjct: 1125 VYRLLSTGTFEERIDEMIQSKKELANLTISSGE 1157


>gi|149196419|ref|ZP_01873474.1| hypothetical protein LNTAR_14717 [Lentisphaera araneosa HTCC2155]
 gi|149140680|gb|EDM29078.1| hypothetical protein LNTAR_14717 [Lentisphaera araneosa HTCC2155]
          Length = 1035

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 31/218 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG----------AVYYDEEKHWKEVH 52
             Y +  R+    L+     A N  +   +  QL+                          
Sbjct: 811  LYQREMRQARQSLKAG--NAMNVLASLTRLRQLSCHSAFGCPEEYRPDPDLPLAQRSPKA 868

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
               I+  + ++ +      +    F            +               K    + 
Sbjct: 869  AAFIEKAKDLMAE--GHSCLFFSQFTGILKEIEKELHNEHIKTHMITGETPSQKRSKIVD 926

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+       +      + G GLNL    + +  F  WW+        E   + R  + G 
Sbjct: 927  EFSESPDASVFLLSLKAAGTGLNLTR-ASYVFIFDPWWNPAA-----ENQAIDRSHRIGQ 980

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               V +Y +I+ ++++E V      K  + D ++   +
Sbjct: 981  DNPVIIYRMISADSVEEKVAALQAEKQKLFDEIIEQDE 1018


>gi|227529368|ref|ZP_03959417.1| SNF2 helicase associated domain protein [Lactobacillus vaginalis ATCC
            49540]
 gi|227350725|gb|EEJ41016.1| SNF2 helicase associated domain protein [Lactobacillus vaginalis ATCC
            49540]
          Length = 1173

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 27/216 (12%)

Query: 2    KQYHK----FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y        + L      E     F   ++  +  QL       +           K+
Sbjct: 951  KLYQARATRLVKRLQSQDDEEFKNNRFEMLAEITRLRQLCCSPKLLN---ADYRGRSGKV 1007

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW 104
                 +I         I++   F S LA L++   + +  D               ++E+
Sbjct: 1008 DQTMELIRDEIAAGHKILLFSQFTSALAILRQRIEKEQISDFVIEGKTKKSDRQAFVKEF 1067

Query: 105  NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N    P +      + G GLNL    ++++ F  WW++       E     R  + G + 
Sbjct: 1068 NTYNGPAIFLISLKAGGTGLNLTS-ADVVIHFDPWWNVAA-----ENQATDRAHRIGQQH 1121

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V +Y +IA++TI+E ++   + KS + + +L+  +
Sbjct: 1122 NVSIYKMIAKDTIEERIIAMQKQKSELANAILSGDE 1157


>gi|320034068|gb|EFW16014.1| DNA repair and recombination protein RAD26 [Coccidioides posadasii
           str. Silveira]
          Length = 1198

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K QR  Y   L    + A      +         ++ N     + +   ++         
Sbjct: 676 KLQRAAYEAFLSSNEMSAIMRGRRDVLFGVDILRKICNHPDLPEHKTLSQKANYNYGNSA 735

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKD 97
              K++ ++ ++   +      ++       L               ++         + 
Sbjct: 736 KSGKMQVVKALLELWRDTGHKTLLFAQHRIMLDILEKFIKSLTGFNYRRMDGNTPIKVRQ 795

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  N+  I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 796 GMVDEFNNDPDIHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DLQARERAW 849

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 850 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 893


>gi|194335233|ref|YP_002017027.1| Non-specific serine/threonine protein kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307710|gb|ACF42410.1| Non-specific serine/threonine protein kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1007

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 35/229 (15%)

Query: 1   MKQYHKFQRE-------LYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKH 47
           MK+Y    +E       +  +LQ +   A          +  VK  Q+ N   +   +  
Sbjct: 762 MKEYCSLTKEQASLYKAVVDELQEKIESAEGIDRRGLVLALLVKLKQVCNHPAHLLGDNS 821

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTL 94
                  KIK L  ++   +      ++   F      LQ                G T 
Sbjct: 822 AIAHRSGKIKRLTELLGDIREAGEKTLLFTQFTMMGTMLQHYLQELYGEEVLFLHGGVTK 881

Query: 95  DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    ++ + +       +      + G GLNL    N +V F  WW+       +E  
Sbjct: 882 KRRDEMVESFQKEEGSSPSIFILSLKAGGTGLNLTT-ANHVVHFDRWWNPA-----VENQ 935

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              R  + G  + V V+  I   T++E + + +  K+T+   +L   ++
Sbjct: 936 ATDRAFRIGQHKNVEVHKFITTGTLEERIDEMIEKKTTVAGQVLGTGEQ 984


>gi|307317157|ref|ZP_07596598.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
 gi|306897245|gb|EFN27990.1| DEAD-like helicase [Sinorhizobium meliloti AK83]
          Length = 522

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 12/205 (5%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDE 54
           MK+Y +F++ L       ++EA +    T K LQ ANG +Y      ++ ++    +HD 
Sbjct: 319 MKEYREFEKTLVAQ--NYDVEAVSRGVLTGKLLQFANGGLYRLDEDVFNAKRETIAIHDY 376

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K+KALE I+E+A    ++VAY F  D  R++K FP+    D++P  +++WN GKI +  A
Sbjct: 377 KLKALESIVEEAAGQNVLVAYSFQFDKDRIRKKFPKAVFFDEEPNFVKKWNAGKIQMGVA 436

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           HPAS GHGLNLQ+GG+I V+F L W LE   Q   R+    Q+      +VF++ +IA+ 
Sbjct: 437 HPASIGHGLNLQHGGHIQVWFGLTWSLELWDQFNRRLARPGQK----NHSVFIHVIIAKG 492

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           T+DE   + L+ K   QD ++NA++
Sbjct: 493 TMDEAQYETLQIKGVTQDQIMNAVR 517


>gi|85109522|ref|XP_962958.1| hypothetical protein NCU07837 [Neurospora crassa OR74A]
 gi|28924603|gb|EAA33722.1| hypothetical protein NCU07837 [Neurospora crassa OR74A]
          Length = 1150

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 33/222 (14%)

Query: 8   QRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEV-------HDE 54
           QRE Y   L+ +++ A       S        ++ N     D                  
Sbjct: 649 QREAYELFLKSDDMTAILNRTRQSLYGIDILRKICNHPDLLDPRLKDDPSYKWGSTSKSG 708

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTI 101
           K+  ++ ++   K      ++       L  ++                   +      +
Sbjct: 709 KMAVVKSLLPMWKRLGHKTLLFCQGTQMLDIIEAFVRRQDGINYLRMDGKTPVKDRQTLV 768

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N +  + L        G G NL  G N ++ F   W+        +     R  + G
Sbjct: 769 DQFNNDPDLHLFLLTTKVGGLGTNLT-GANRVIIFDPDWNPST-----DVQARERAWRLG 822

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            K+ V +Y L+   TI+E +  R   K  + + +L   K++T
Sbjct: 823 QKKEVTIYRLMTAGTIEEKIYHRQIFKQFLSNKVLKDPKQQT 864


>gi|126654102|ref|ZP_01725924.1| helicase, putative [Bacillus sp. B14905]
 gi|126589410|gb|EAZ83559.1| helicase, putative [Bacillus sp. B14905]
          Length = 924

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKI 56
            Y  +  E    L+      +         K  QL N    Y     E+         K+
Sbjct: 696 LYEGYILETLDQLEELTGFQKKGRVLKMLSKLKQLCNHPALYLKEPFEDAETMLARSAKL 755

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
           + +  +  +   N    ++   +      LQ    +                +    ++ 
Sbjct: 756 ERIVQMAAEIVDNGEQCLIFTQYIGMGQLLQHCLSELYNVDAPFLTGAMPKQQRDRLVEA 815

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G  P+      + G GLNL    N ++    WW+       +E     R  + G  +
Sbjct: 816 FQAGDFPIFILSLKAGGTGLNLTA-ANHVLHADRWWNPA-----VENQATDRAYRIGQTQ 869

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   TI+E + + L  KS + + L+ +
Sbjct: 870 FVQVHKFVTLGTIEEKIDKMLAQKSALSEELIQS 903


>gi|302411025|ref|XP_003003346.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
           VaMs.102]
 gi|261358370|gb|EEY20798.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
           VaMs.102]
          Length = 1117

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 31/223 (13%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-------EVH 52
           ++ Y +F   +    +         S        ++ N     D     K          
Sbjct: 624 LEAYKQFLNSDAVNQILSA---RRKSLYGIDILRKICNHPDLIDPHLQNKAGYDWGDPEK 680

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPC 99
             K+  +  ++   K      ++       L                      +++K   
Sbjct: 681 SGKMLVVRNLLQIWKKLGHKTLLFSQSKMMLNVIEKFLGGLETVKYVRMDGETSIEKRQS 740

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N + +I +      + G G+NL  G N ++ F   W+              R  +
Sbjct: 741 LIDQFNTDPEIDIFLLTTRTGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWR 794

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R+V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 795 LGQTRSVEIYRLMTAGTIEEKIYHRQIFKQFMTNKVLKDPKQR 837


>gi|327302918|ref|XP_003236151.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
 gi|326461493|gb|EGD86946.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
          Length = 1225

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 675 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKILSTKTDYNYGSGA 734

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 735 KSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIGGFNGFNYRRMDGNTPIKVRQ 794

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 795 SMVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 848

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|327439414|dbj|BAK15779.1| superfamily II DNA/RNA helicase, SNF2 family [Solibacillus silvestris
            StLB046]
          Length = 1061

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 6    KFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            K + +    L  E          +   +  Q+      + E          K + L  ++
Sbjct: 846  KLRVDTMKHLDKETFHKNRIRILAGITRLRQICCHPALFVEGYK---GSSAKFEQLFRLL 902

Query: 64   EKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            E++  +   +++   F   L                       ++       +N+G+  +
Sbjct: 903  EQSKVSGRRVLIFSQFTQMLKMIATELSKRGEQYFYLDGQTPSEERIALCNSFNDGERDM 962

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL  G + ++ + LWW+       +E     R  + G K  V V  LI
Sbjct: 963  FLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAADRAHRMGQKEVVQVIKLI 1016

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALK 199
            A  TI+E + +  + K  +   +L+  +
Sbjct: 1017 ANGTIEEKMSELQQKKKMLISDILDGDE 1044


>gi|255720394|ref|XP_002556477.1| KLTH0H14300p [Lachancea thermotolerans]
 gi|238942443|emb|CAR30615.1| KLTH0H14300p [Lachancea thermotolerans]
          Length = 1037

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 36/227 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYY------DEEKHWKEV 51
           QY   + +    L  E++                  ++ N           +E+ +    
Sbjct: 561 QYQ--RNKYLQFLNSEDLVKIKNGKRQVLFGIDILRKICNHPDLLEREQRQNEDSYGDPK 618

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------- 96
              K++ ++ ++    +     ++       L  L++         +             
Sbjct: 619 RSGKMQVVKQLLKLWHSQGHKTLLFTQSRQMLDILERFISYKDPELEELTYLRMDGTTSI 678

Query: 97  --DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 +  +N G   +        G G+NL  G N ++ F   W+              
Sbjct: 679 GARQALVDSFNNGSYDVFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARE 732

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G +R V +Y L+   +I+E +  R   K  + + +L   K++
Sbjct: 733 RAWRIGQRREVTIYRLMIAGSIEEKIYHRQIFKQFLTNKILTDPKQK 779


>gi|283796858|ref|ZP_06346011.1| protein, SNF2 family [Clostridium sp. M62/1]
 gi|291075264|gb|EFE12628.1| protein, SNF2 family [Clostridium sp. M62/1]
          Length = 449

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 21/209 (10%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y + +RE + +L+ G  I A    +K ++  Q   G +  D E+  + V   K+ ALE 
Sbjct: 241 IYDRIKRESFAELESGGQISATTVLTKLLRLQQFTGGFLVADGEEKPELVSKGKLNALEE 300

Query: 62  IIEKA---NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EG 107
           I++         +++   F  ++  + +                 L+     ++++    
Sbjct: 301 IVDDYVVDAGKKLVIFARFRPEIDIIGQMLKKKKLRYGEIYGDVKLEDRGDIVKDFQTNP 360

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +  A   + G G+ L    +  V++S+ ++   + Q + RI      + G K A   
Sbjct: 361 ETMVFLAQIDTAGLGITLTA-ADTCVYYSVNFNYAAYSQSLARI-----HRIGQKNACTY 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +LI + TIDE+VL+ L  K  +   +++
Sbjct: 415 IHLITEGTIDEVVLKALAKKEDLAKTVVD 443


>gi|26554357|ref|NP_758291.1| helicase/SNF2 domain-containing protein [Mycoplasma penetrans HF-2]
 gi|26454367|dbj|BAC44695.1| helicase with SNF2 domain [Mycoplasma penetrans HF-2]
          Length = 1041

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 4    YHKFQRELYCD---LQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +  +        ++ + I    +   S   K  Q+        E      ++  K   
Sbjct: 819  YAELSKSQIAIRKGIEDKTINKQGAFIFSVLTKLRQICCSPKLSYENSD---INGSKFNL 875

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
               +I+    N   I++   F S +  + +   +               +    + E+N 
Sbjct: 876  CIDLIKDLIKNNDKILLFSQFTSMIDLIAQELKKLKINFLVLTGETNKKERMELVNEFNN 935

Query: 107  -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
               I +      + G GL L    N ++ +  WW+L       E     R  + G ++ V
Sbjct: 936  KNNIKIFLISLKAGGTGLTLTS-ANAVIHYDPWWNLSL-----ENQATDRAHRIGQEKNV 989

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y LI +++I+E +L    +K  I + + + 
Sbjct: 990  FIYKLIVKDSIEEKILSLQESKREIINQIFDE 1021


>gi|299538009|ref|ZP_07051295.1| ATP-dependent helicase [Lysinibacillus fusiformis ZC1]
 gi|298726591|gb|EFI67180.1| ATP-dependent helicase [Lysinibacillus fusiformis ZC1]
          Length = 921

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEKI 56
            Y  +  E    L+      +         K  QL N    Y     E+         K+
Sbjct: 694 LYEGYILETLDQLEQLTGFQKKGRVLKMLSKLKQLCNHPALYLKEPFEDAETMLARSTKL 753

Query: 57  KALEV-------------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
           + +               I  +      ++ + F+                 +    ++ 
Sbjct: 754 ERIVQMAAEIVDNGEQCLIFTQYIGMGQLLQHCFSEIYNVDAPFLTGAMPKQQRDRLVEA 813

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G  P+      + G GLNL    N ++    WW+       +E     R  + G  +
Sbjct: 814 FQAGDFPIFILSLKAGGTGLNLTA-ANHVLHADRWWNPA-----VENQATDRAYRIGQTQ 867

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   TI+E + + L  KS + + L+ +
Sbjct: 868 FVQVHKFVTIGTIEEKIDKMLVQKSALSEELIQS 901


>gi|111018652|ref|YP_701624.1| helicase [Rhodococcus jostii RHA1]
 gi|110818182|gb|ABG93466.1| probable helicase [Rhodococcus jostii RHA1]
          Length = 1070

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L    +   F          QL+  A   D    + +V   K+ 
Sbjct: 851  KVYDTHLQRERQKILGLLADVDKNRFTILQSLTLLRQLSLDAGLVD--AEYHDVPSAKVD 908

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
            AL   +          +V   F   L +++               +  +    ++E+ EG
Sbjct: 909  ALLEQLADVVAGGHRALVFSQFTGFLGKIRDRLADAGIAHSYLDGSTRRRGDVLREFKEG 968

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    +       WW+        E   V R  + G  R V V
Sbjct: 969  AAPVFLISLKAGGFGLNLTE-ADYCFILDPWWNPAT-----EAQAVDRAHRIGQTRNVMV 1022

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LIA++TI++ V+     KS +   +++A
Sbjct: 1023 YRLIAKDTIEDKVMALKAKKSALFASVMDA 1052


>gi|168182529|ref|ZP_02617193.1| helicase, Snf2 family [Clostridium botulinum Bf]
 gi|182674407|gb|EDT86368.1| helicase, Snf2 family [Clostridium botulinum Bf]
          Length = 1097

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++E+       I++   F S L                        +    + E+N    
Sbjct: 934  LVEEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       IE     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----IEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
             L+ + TI+E ++     K  + + ++N+ LK E +
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNSDLKNEHL 1083


>gi|227540131|ref|ZP_03970180.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
            spiritivorum ATCC 33300]
 gi|227239992|gb|EEI90007.1| SNF2 family superfamily II DNA/RNA helicase [Sphingobacterium
            spiritivorum ATCC 33300]
          Length = 1119

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 18/206 (8%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K  RE     +G+ I            K  Q+ N       E    E +  KI+ L 
Sbjct: 900  LYEKEFREFISATEGDEIRKSPMYVLKGLTKLRQICNSTKLLKTEDLSTEDNSAKIETLI 959

Query: 61   V-IIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIP 110
              I +      IIV   F S L  +QK             G+T +++        +    
Sbjct: 960  EQIEDNIAYHKIIVFSQFVSMLYLIQKALSAKGINAYMLTGKTKNREQVVHNFQQQEDNR 1019

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    +++     WW+       +E   + R  + G ++ V    L
Sbjct: 1020 VFLISLKAGGTGLNLTA-ASLVYLVDPWWNPA-----VENQAIDRAYRIGQQQTVTAVRL 1073

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            I  +T++E +++  ++K+ +   L+ 
Sbjct: 1074 ITPDTVEEKMIKMQQSKNELASALIG 1099


>gi|167756157|ref|ZP_02428284.1| hypothetical protein CLORAM_01680 [Clostridium ramosum DSM 1402]
 gi|167704149|gb|EDS18728.1| hypothetical protein CLORAM_01680 [Clostridium ramosum DSM 1402]
          Length = 1068

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +   EL   L  E I+     +   +  Q+   A       +       K+KA   II+K
Sbjct: 851  QINSELKTALDVERIDKIQILAMMTRLRQICCDARILY---NEIIGPSSKMKACLDIIKK 907

Query: 66   --ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               N   +++   F S L                        K    +  +      +  
Sbjct: 908  AKENNQKVLLFSSFTSSLDLLEKELRKEDISYYVLTGATNKIKRHQLVNAFQNDNTDVFL 967

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ F  WW++             R  + G    V VY LI +
Sbjct: 968  ISLKAGGTGLNLTA-ASIVIHFDPWWNMSAQ-----NQATDRAYRIGQTNNVQVYKLIMK 1021

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            N+I+E + +    K  + ++ + 
Sbjct: 1022 NSIEEKIQELQAQKQDLSNIFIE 1044


>gi|25027819|ref|NP_737873.1| chromodomain-containing helicase [Corynebacterium efficiens YS-314]
 gi|259506209|ref|ZP_05749111.1| DNA/RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493102|dbj|BAC18073.1| putative chromodomain helicase [Corynebacterium efficiens YS-314]
 gi|259166186|gb|EEW50740.1| DNA/RNA helicase [Corynebacterium efficiens YS-314]
          Length = 1034

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVDDVQQQLSQRQGMSRKGLVLATITRIKQICNHPAHFLNDGSPLTLRGRHRSGKV 858

Query: 57   KALEVIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQE 103
            +AL  +++ A      +++   + +            L         G +       +  
Sbjct: 859  EALMDLLDDAVAQERRMLIFTQYTAFGQLLAPYLSDRLGVDIPFLHGGVSKLGRDRMVAR 918

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   P +     + G GLNL    +I+V    WW+       +E     R  + G K
Sbjct: 919  FQAGDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQK 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              V VY +I   T++E +   L  K  +   ++   +     +
Sbjct: 973  NNVDVYKMITAGTMEESIQDILDGKMHLASAIVGEGEGWITEL 1015


>gi|117558161|gb|AAI27105.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
          Length = 1493

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 774 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 829

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 830 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 890 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 943

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 944 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|237794935|ref|YP_002862487.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
 gi|229261620|gb|ACQ52653.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
          Length = 1097

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++E+       I++   F S L                        +    + E+N    
Sbjct: 934  LVEEGVDEGKKILLFSQFISVLKNISKLLEKEGIEYFYLDGSTNASERIKLVNEFNKNSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       IE     R  + G K  V V 
Sbjct: 994  VKVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----IEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETI 203
             L+ + TI+E ++     K  + + ++N+ LK E +
Sbjct: 1048 KLVCKGTIEEKIIMLQEDKKELINNVMNSDLKNEHL 1083


>gi|270157430|ref|ZP_06186087.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|289164177|ref|YP_003454315.1| DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
 gi|269989455|gb|EEZ95709.1| SNF2/RAD54 family DNA helicase [Legionella longbeachae D-4968]
 gi|288857350|emb|CBJ11178.1| putative DNA/RNA helicases, superfamily II, SNF2 family [Legionella
            longbeachae NSW150]
          Length = 1091

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 25/220 (11%)

Query: 3    QYHK----FQRELYCDLQGENIEAFNSASKTVKC--LQLANGAVYYD-EEKHWKEVHDEK 55
             Y       ++++   +  + +   +           Q+          E         K
Sbjct: 865  LYEAIRMSMEKKVRDAIAKQGLGKSHILLLDALLKLRQVCCDPRLLSLPEAAIAHGTSAK 924

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWN 105
            ++AL  ++         ++V   F S L         R                 + ++ 
Sbjct: 925  LEALMDLLNNLIGEGRRVLVFSQFTSMLQLIEEELRARHYDYLKLTGQTQHRQAMVDKFQ 984

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            EG  P+      + G GLNL    + ++ +  WW+       +E     R  + G +  V
Sbjct: 985  EGNTPVFLISLKAGGTGLNLTR-ADTVIQYDPWWNPA-----VEAQATDRAHRIGQENPV 1038

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETI 203
            FVY LI   T++E +L     K  + + +L  ++ K   +
Sbjct: 1039 FVYKLITAGTVEEAILTMQEKKRLLGESVLSPDSTKATAL 1078


>gi|237733335|ref|ZP_04563816.1| SWF/SNF family helicase [Mollicutes bacterium D7]
 gi|229383547|gb|EEO33638.1| SWF/SNF family helicase [Coprobacillus sp. D7]
          Length = 1068

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +   EL   L  E I+     +   +  Q+   A       +       K+KA   II+K
Sbjct: 851  QINSELKTALDVERIDKIQILAMMTRLRQICCDARILY---NEIIGPSSKMKACLDIIKK 907

Query: 66   --ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               N   +++   F S L            L           K    +  +      +  
Sbjct: 908  AKENNQKVLLFSSFTSSLDLLEKELRKEDILYYVLTGATNKIKRHQLVNAFQNDNTDVFL 967

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ F  WW++             R  + G    V VY LI +
Sbjct: 968  ISLKAGGTGLNLTA-ASIVIHFDPWWNMSAQ-----NQATDRAYRIGQTNNVQVYKLIMK 1021

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            N+I+E + +    K  + ++ + 
Sbjct: 1022 NSIEEKIQELQAQKQDLSNIFIE 1044


>gi|218282742|ref|ZP_03488939.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
 gi|218216387|gb|EEC89925.1| hypothetical protein EUBIFOR_01525 [Eubacterium biforme DSM 3989]
          Length = 1054

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 21/190 (11%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYH 76
             +++    +   +  Q+        E    +     K      +IE  K N   +++   
Sbjct: 853  KVDSILILAMMTRLRQICCEPRMLYENYKGE---STKFSMCLDLIETLKENGKKVLLFSS 909

Query: 77   FNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            F S                          K    +  +      +      + G GLNL 
Sbjct: 910  FTSIFDDFIEEFDRRGIKYHMITGAVDKKKRKEEVDAFQNDDSNVFLISLKAGGTGLNLT 969

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 ++ F  WW++             R  + G  + V VY L+ +NTI+E + +  + 
Sbjct: 970  K-AQAVIHFDPWWNVSAQ-----NQATDRAYRIGQTKNVLVYQLLMKNTIEEKIYEMQKR 1023

Query: 187  KSTIQDLLLN 196
            K  + DL + 
Sbjct: 1024 KKEMSDLFVE 1033


>gi|326445042|ref|ZP_08219776.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1242

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 28/225 (12%)

Query: 3    QYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DE 54
             Y    R+   ++                    Q+ N    Y +E               
Sbjct: 1010 LYEANVRDTLREITASSGIERRGLVLKLLQALRQICNTPTLYLKEPLEDAEPATLARRSG 1069

Query: 55   KIKALEVIIEKANAAPI--IVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQ 102
            K+ AL+ ++    A     +V   +               R  +    G    +    + 
Sbjct: 1070 KLAALDDLMSTLAARSEAALVFTGYVQMGRILEHHLRARGRSVRFLHGGTPPARRQELVD 1129

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +       P+L     + G GL L      ++ +   W+       +E     R  + G
Sbjct: 1130 IFQHDPDPAPVLILSVKAAGTGLTLTR-AEHVIHYDRPWNPA-----VEDQATDRAHRIG 1183

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              R V V++LI + T+++ + + L  K  + D +L + +     +
Sbjct: 1184 QNRTVQVHHLITEGTVEDHISELLARKRALTDAVLTSGEGALTEL 1228


>gi|310639769|ref|YP_003944527.1| snf2-like protein [Paenibacillus polymyxa SC2]
 gi|309244719|gb|ADO54286.1| SNF2-like protein [Paenibacillus polymyxa SC2]
          Length = 987

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 41/238 (17%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAV--------------YYDEEK 46
            Y +  +EL   +Q            S   +  QL +                 Y   + 
Sbjct: 740 LYDQIVKELMERMQKLEGIERKGAILSALTQLKQLCDHPALLTKGALLDAAASGYSQPDL 799

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRT 93
                   K++ +  ++++        ++   +             +L           +
Sbjct: 800 EAVISRSSKLERILAMVKELREEGERCLIFTQYIGMGQMLQQVLAQELQEPVLYLNGSTS 859

Query: 94  LDKDPCTIQEWN------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  I ++       + +  +      + G GLNL    N +  F  WW+       
Sbjct: 860 KSARDRMIDQFQSHTLSPDEQPSVFILSLKAGGVGLNLTA-ANHVFHFDRWWNPA----- 913

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +E     R  + G  + V V+  I+  T++E + + L +K  + D ++ + +     +
Sbjct: 914 VENQATDRAYRMGQTKDVQVHKFISLGTLEERIDEMLESKQQLSDQIITSTEGWITEL 971


>gi|254393251|ref|ZP_05008403.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197706890|gb|EDY52702.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 759

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 28/225 (12%)

Query: 3   QYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DE 54
            Y    R+   ++                    Q+ N    Y +E               
Sbjct: 527 LYEANVRDTLREITASSGIERRGLVLKLLQALRQICNTPTLYLKEPLEDAEPATLARRSG 586

Query: 55  KIKALEVIIEKANAAPI--IVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQ 102
           K+ AL+ ++    A     +V   +               R  +    G    +    + 
Sbjct: 587 KLAALDDLMSTLAARSEAALVFTGYVQMGRILEHHLRARGRSVRFLHGGTPPARRQELVD 646

Query: 103 EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +       P+L     + G GL L      ++ +   W+       +E     R  + G
Sbjct: 647 IFQHDPDPAPVLILSVKAAGTGLTLTR-AEHVIHYDRPWNPA-----VEDQATDRAHRIG 700

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             R V V++LI + T+++ + + L  K  + D +L + +     +
Sbjct: 701 QNRTVQVHHLITEGTVEDHISELLARKRALTDAVLTSGEGALTEL 745


>gi|283795073|ref|ZP_06344226.1| Snf2 family protein [Clostridium sp. M62/1]
 gi|291077403|gb|EFE14767.1| Snf2 family protein [Clostridium sp. M62/1]
          Length = 254

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 24/209 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++     +++   +LQ          ++  +  Q+        E          K++   
Sbjct: 39  VRLMESLEKQSDEELQKGK---LQILAELTRLRQICCAPEMLYENYSET---SCKVETCM 92

Query: 61  VIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
            +I +  +    I++   F S                       + +      +++N G 
Sbjct: 93  ELIHQAMSGNHKILLFSQFTSVFPILEKRLLQEKIPYYELTGQTSKENRMRMTEQFNSGD 152

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +P+      + G GLNL    +I++ F  WW+L             R  + G ++ V V+
Sbjct: 153 VPVFLISLKAGGTGLNLTA-ASIVIHFDPWWNLAAQ-----NQATDRAHRIGQEKQVTVF 206

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LIAQNTI+E +++  + K  +   +L+ 
Sbjct: 207 KLIAQNTIEEKIIKLQQEKQKLSSQILDG 235


>gi|119613505|gb|EAW93099.1| hCG32740, isoform CRA_e [Homo sapiens]
          Length = 1356

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 774 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 829

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 830 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 890 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 943

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 944 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|255534042|ref|YP_003094414.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
 gi|255347026|gb|ACU06352.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
          Length = 964

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 18/199 (9%)

Query: 8   QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +L   +                    QLAN  V  DE         E +      + K
Sbjct: 753 RNDLLNSMDDGTYAKKQVQLLQGLTALRQLANHPVMIDETYTSDSGKFENVVHTLDNVLK 812

Query: 66  ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                +++   F   L   ++          +  G T ++            + +     
Sbjct: 813 -GGHKVLIFSQFVKHLNIFRQYLEEENISFAYLDGATKNRGEIVADFQKNTALKVFLISI 871

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + +     WW+    QQ I+R       + G  + VF+Y  IA++T+
Sbjct: 872 KAGGVGLNLTE-ADYVFILDPWWNPAVEQQAIDR-----THRIGQDKKVFIYKFIAKDTV 925

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +L     K  +   L+
Sbjct: 926 EEKILALQNRKKRLASSLI 944


>gi|225352246|ref|ZP_03743269.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157493|gb|EEG70832.1| hypothetical protein BIFPSEUDO_03862 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1158

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 26/213 (12%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y   ++ L   L          +     ++     ++         +         K+
Sbjct: 936  KLYAAHEQRLRATLTKTKDADFNTKKIRILAEFTLLREICCDPRLVYADAKNA---SAKL 992

Query: 57   KALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
             A+  ++      +  ++V   F S L  +                     +    + E+
Sbjct: 993  DAICELVSTCMDESKKVLVFSQFTSFLDLIGTRLAEQGVDFYTITGETPKKRRVELVDEF 1052

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +P+      +   GLNL  G +++V    WW+              R  + G  + 
Sbjct: 1053 NGNDVPVFLISLKAGNTGLNL-VGASVVVHADPWWNAAAQ-----NQATDRAHRIGQTQD 1106

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY ++A++TI+E +L+    KS +     + 
Sbjct: 1107 VNVYQIVAKDTIEERILKLQEKKSELAQQFTDG 1139


>gi|313124061|ref|YP_004034320.1| DNA/RNA helicase, superfamily ii, snf2 family protein [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
 gi|312280624|gb|ADQ61343.1| DNA/RNA helicase, superfamily II, SNF2 family protein [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
          Length = 1185

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHK----FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y       + ++  +       E     +   +  ++        E+   +    EK 
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE---SEKR 1018

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
             A   +I+        +++   F S L  L++                   +    +  +
Sbjct: 1019 LACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKADEIGFLRIDGQTPKARRLTLVNVF 1078

Query: 105  N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N  +    +      + G GLNL  G + ++ +  WW++             R  + G +
Sbjct: 1079 NHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQ-----NQATDRAHRIGQE 1132

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY LIA++T++E +L     KS +   +L A
Sbjct: 1133 KKVTVYKLIAKDTVEEAILDLQEAKSQLAQGILTA 1167


>gi|218666513|ref|YP_002425806.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
 gi|218518726|gb|ACK79312.1| helicase, SNF2/RAD54 family [Acidithiobacillus ferrooxidans ATCC
            23270]
          Length = 1381

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 4    YHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y   +R+   +      Q  +   F+  ++  K  + A                  K++ 
Sbjct: 1155 YEALRRQAIVEAEAAIAQSGSQAHFHILAQLTKLRRAACDPRLVSPNLDIVG---AKVRT 1211

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNE 106
               +     AN    +V   F   L              +       +      I+++  
Sbjct: 1212 FADLAGDLSANGHKALVFSQFVDFLTLLREPLDAAGIPYQYLDGSTPVADRERRIRDFQA 1271

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K  L      + G GLNL    + ++    WW+        E   + R  + G  R V 
Sbjct: 1272 EKGNLFLISLKAGGFGLNLTA-ADYVIITDPWWNPAA-----EDQAMGRAHRIGQLRPVT 1325

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY L+AQ T++E ++     K  + D +L
Sbjct: 1326 VYRLVAQGTLEEQIIALHHDKRALADGVL 1354


>gi|115387749|ref|XP_001211380.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
 gi|114195464|gb|EAU37164.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
          Length = 1192

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKE------VHD 53
           K QR+ Y   L  + +++       +        ++ N       +    +         
Sbjct: 671 KLQRQSYKAFLASQEMQSILRGRRQALYGIDILRKICNHPDLQSHKFSAHKAAYGGAEKS 730

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARL-----------QKAFPQGRTLDKDPCT 100
            K++ +  ++   +      ++       L  L            +       + +    
Sbjct: 731 GKMQVVRSLLELWRDTGHKTLLFAQHRIMLDILEKFVNSLSGINYRRMDGTTPIAQRQSM 790

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + E+N +  + L        G G+NL  G + ++ +   W+              R  + 
Sbjct: 791 VDEFNKDPSLHLFLLTTKVGGLGVNLT-GADRVIIYDPDWNPSTDM-----QARERAWRL 844

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 845 GQKREVTIYRLMTAGTIEEKIYHRQVFKQFLTNKILRDPKQR 886


>gi|95007492|emb|CAJ20716.1| SWI/SNF family transcriptional activator protein, putative
           [Toxoplasma gondii RH]
          Length = 1383

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           + Y     +    LQG          +  ++  +  N    +D                +
Sbjct: 709 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIEN 768

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++  + ++ +        ++       +  L+                 + D+    
Sbjct: 769 AGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDRQ 828

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +N     IP+      + G G+NL    + ++ +   W+ +     ++   + R  +
Sbjct: 829 IEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----VDLQAMDRVHR 882

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K AV VY L+ ++TI++ +++R   K  +   ++   +
Sbjct: 883 IGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQQGR 923


>gi|294055867|ref|YP_003549525.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615200|gb|ADE55355.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 843

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 25/216 (11%)

Query: 2   KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHD 53
           + Y     +   +L  +       +A N  +   +  Q         E            
Sbjct: 611 QVYEGLLNKGREELGDDLQAAMQSQATNFFTLLTRLRQACCDPGLIPEVAAPLEQSGKIQ 670

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQ 102
             +  LE  +E A A  +++   F   L RL+                G+T D+      
Sbjct: 671 TLLIHLEEALEGAGARKVVIFSQFVQLLTRLKPEIKAKFPKVALLELTGQTRDRSKPVET 730

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+    ++     + G G+ L    + +     WW+       +E   V R  + G +
Sbjct: 731 FQNKDGPAVILVSLRAGGTGITLHA-ADYVFLLDPWWNPA-----VENQAVDRVHRIGQQ 784

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + VFVY +I Q TI+E +    R K  + +  L  L
Sbjct: 785 KRVFVYRMITQGTIEERIQHLKREKRELFENTLGNL 820


>gi|170761655|ref|YP_001787000.1| SNF2 family helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408644|gb|ACA57055.1| helicase, Snf2 family [Clostridium botulinum A3 str. Loch Maree]
          Length = 1097

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y  + + +   L+    +     S   +  QL        +E         K++    
Sbjct: 877  RIYKAYMKSIKEKLKNNKEDKITIFSYLTRLRQLCLDPSIIIDEYK---GGSSKLRIAME 933

Query: 62   IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            ++++       I++   F S L                        +    + ++N    
Sbjct: 934  LVQEGVDEGKKILLFSQFTSVLKNISKLLEKECIEYFYLDGSTNASERIKLVNKFNKSSH 993

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G GLNL    N+++ F  WW+       IE     R  + G K  V V 
Sbjct: 994  VKIFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----IEDQATDRAHRIGQKNLVQVI 1047

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ + TI+E ++     K  + + ++N+
Sbjct: 1048 KLVCKGTIEEKIITLQEDKKELINDVMNS 1076


>gi|326471229|gb|EGD95238.1| DNA repair and recombination protein RAD26 [Trichophyton tonsurans
           CBS 112818]
          Length = 1225

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 675 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKVLSTKTDYNYGSGA 734

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 735 KSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQ 794

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 795 SMVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 848

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 892


>gi|224049311|ref|XP_002191591.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5
           [Taeniopygia guttata]
          Length = 1093

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 450 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 509

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 510 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 569

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +N+      +      + G G+NL    ++++ +   W+ +    
Sbjct: 570 DGQTPHNERQASINAFNDPDSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 624

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   K
Sbjct: 625 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGK 676


>gi|4557565|ref|NP_000115.1| DNA excision repair protein ERCC-6 [Homo sapiens]
 gi|416959|sp|Q03468|ERCC6_HUMAN RecName: Full=DNA excision repair protein ERCC-6; AltName:
           Full=ATP-dependent helicase ERCC6; AltName:
           Full=Cockayne syndrome protein CSB
 gi|182181|gb|AAA52397.1| excision repair protein [Homo sapiens]
 gi|27501924|gb|AAO13487.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
 gi|55661841|emb|CAH70291.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [Homo sapiens]
 gi|119613500|gb|EAW93094.1| hCG32740, isoform CRA_a [Homo sapiens]
 gi|119613503|gb|EAW93097.1| hCG32740, isoform CRA_a [Homo sapiens]
          Length = 1493

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 774 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 829

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 830 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 890 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 943

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 944 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|149200413|ref|ZP_01877429.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
 gi|149136482|gb|EDM24919.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa HTCC2155]
          Length = 1041

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 2    KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y +      +E   D +       N  +   +  Q+       +E+    E     + 
Sbjct: 822  KIYREMHAYYSQEKQKDDKETPGGKGNMLAALTRLRQVVCHPYLVNEDYRHIESAKINLL 881

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGK 108
              ++    A+ A  ++   F   L                  G T D+     +     K
Sbjct: 882  ISQLEQVFASGAKALIFSQFTQFLDLIEEAIQMNKWNYTRLDGSTKDRQVPVQEFNENEK 941

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                     + G GLNL      +     WW+     Q I+R       + G ++AV  Y
Sbjct: 942  CRFFLISLKAGGTGLNLTQ-AQYVYIMDPWWNPAAESQAIDR-----AYRIGQEKAVSAY 995

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++A++TI++ +LQ    KS +   ++ A
Sbjct: 996  RIVAKDTIEDKLLQLQAEKSQLVQDVVEA 1024


>gi|313499735|gb|ADR61101.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
            BIRD-1]
          Length = 1110

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 18/207 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEV 61
             +  R+      G            +K  Q+            + +  +          +
Sbjct: 883  DQKVRDEIAR-NGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEML 941

Query: 62   IIEKANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                +    +++   F S L         R  +              +Q++ +G+  +  
Sbjct: 942  EELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFL 1001

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI +
Sbjct: 1002 ISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLITR 1055

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
             T++E +    + K+ +   LL+  + 
Sbjct: 1056 GTVEEKIQLLQQEKAALAASLLDGGQA 1082


>gi|118089929|ref|XP_001234486.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5 [Gallus
           gallus]
          Length = 1198

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 555 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 614

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 615 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 674

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 675 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 729

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 730 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 781


>gi|124024526|ref|YP_001018833.1| SNF2 family DNA/RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964812|gb|ABM79568.1| Superfamily II DNA/RNA helicases, SNF2 family [Prochlorococcus
            marinus str. MIT 9303]
          Length = 1099

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK----- 55
             Y     E    +        +        +  Q+ N      +EK   +   ++     
Sbjct: 869  LYRNTVDETLEAIARAPSGQRHGKVLGLLTRLKQICNHPALALKEKTVAKGFMDRSAKLL 928

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
                 +          ++   F      L+                  +  +    +  +
Sbjct: 929  RLEEILEEVIEAGDRALLFTQFAEWGHLLKAYLQQRWRFEVPFLHGSTSKTERQAMVDRF 988

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 989  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHVDRWWNPA-----VENQATDRAYRIGQT 1042

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1043 NRVMVHKFITSGSVEEKIDRMIREKSRLAEDIIGSGE 1079


>gi|114635114|ref|XP_507781.2| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Pan troglodytes]
          Length = 1491

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 772 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 827

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 828 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 887

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 888 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 941

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 942 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|297686445|ref|XP_002820759.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein
           ERCC-6-like [Pongo abelii]
          Length = 1493

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 774 KVYQNFVDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 829

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 830 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 889

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 890 TIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 943

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 944 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 993


>gi|284174757|ref|ZP_06388726.1| hypothetical protein Ssol98_08906 [Sulfolobus solfataricus 98/2]
          Length = 319

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L+ ++             S  +K  Q+ +                 K+    
Sbjct: 92  MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLK-GGEQSVRRSGKMIRTM 150

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQEWNE 106
            IIE+       I +   F      ++    +                ++D    +  N 
Sbjct: 151 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN 210

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +     + G G+NL    N ++ F  WW+       +E     R  + G  R V 
Sbjct: 211 PSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPA-----VEDQATDRVYRIGQTRNVI 264

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 265 VHKLISVGTLEEKIDQLLAFKRSLFKDIISS 295


>gi|295662396|ref|XP_002791752.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb01]
 gi|226279878|gb|EEH35444.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb01]
          Length = 1234

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 704 KIQRSAYQAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA 763

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L             +     G T  K   
Sbjct: 764 KSGKMQVVKALLELWKETGHKSLLFAQHRIMLDILERFIKSMTGFKYQRMDGNTPIKLRQ 823

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N   +I +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 824 SLVDEFNNNPEIHIFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 877

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 878 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 921


>gi|150017526|ref|YP_001309780.1| non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149903991|gb|ABR34824.1| Non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1057

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ E    +     S   K  QL        ++         K++  
Sbjct: 835  KVYASYVKDIKEKMEAENFERDKITIFSYLTKLRQLCLDPSIVVDKYT---GGSAKLEEA 891

Query: 60   EVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-E 106
              +IE    N   I++   F S L                        K    + E+N  
Sbjct: 892  LNLIEDNIANGHKILLFSQFTSVLNNISKELSENKIEHMYLDGSTKATKRSELVDEFNGS 951

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K  +      + G GLNL    +I++ F  WW+       +E     R  + G K  V 
Sbjct: 952  DKYKVFLISLKAGGTGLNLTS-ADIIIHFDPWWNPA-----VEDQATDRAHRIGQKNVVQ 1005

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ LI++ TI+E ++    +K  + + +L +
Sbjct: 1006 VFKLISEGTIEERIINLQESKKELINGILES 1036


>gi|295100101|emb|CBK89190.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium
           cylindroides T2-87]
          Length = 473

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 68/201 (33%), Gaps = 21/201 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--A 66
           +E+   ++  + +     +   K  Q+   A    +     +    KI A   +I+    
Sbjct: 263 KEMQAKMKEVHFDRIAILAMLTKLRQICCDARLVYDN---IKEPSTKINATISLIKTLTE 319

Query: 67  NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
           N   I++   F S L                       ++    +  +NE    +     
Sbjct: 320 NNKKILLFSAFTSLLDLVSNQLDKEQISYYMLTGSTNKEERRKLVNNFNEDDTRVFLISL 379

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL      ++    WW+L             R  + G    V VY +I +++I
Sbjct: 380 KAGGTGLNLTS-AEAVIHIDPWWNLSAQ-----NQATDRAHRIGQNANVQVYRMIMKDSI 433

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L+    K+ + D  +  
Sbjct: 434 EEKILKMQERKANLADSFVEG 454


>gi|26988870|ref|NP_744295.1| Snf2/Rad54 family helicase [Pseudomonas putida KT2440]
 gi|24983677|gb|AAN67759.1|AE016407_3 helicase, SNF2/RAD54 family [Pseudomonas putida KT2440]
          Length = 666

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 18/207 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEV 61
            +  R+      G            +K  Q+            + +  +          +
Sbjct: 444 DQKVRDEIAR-NGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEML 502

Query: 62  IIEKANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               +    +++   F S L         R  +              +Q++ +G+  +  
Sbjct: 503 EELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFL 562

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI +
Sbjct: 563 ISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLITR 616

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKK 200
            T++E +    + K+ +   LL+  + 
Sbjct: 617 GTVEEKIQLLQQEKAALAASLLDGGQA 643


>gi|237785888|ref|YP_002906593.1| putative DNA/RNA helicase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758800|gb|ACR18050.1| putative DNA/RNA helicase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 1065

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 27/219 (12%)

Query: 3    QYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVHDEK 55
             Y      +  +L+   G                Q+ N    Y                K
Sbjct: 806  LYKAVTATVAKELESKQGGMDRRGLIFKLLTGLKQICNHPAQYLGDDSPFLDGTHHRSGK 865

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
            +   E ++++       +++   F      L+  F                  +    + 
Sbjct: 866  VATAEPLVDEALQQGRKVLIFTQFVVFGNMLKTYFNNRYGIDVPFLNGSVERKERDRMVN 925

Query: 103  EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N     P++     + G GLNL  G ++++    WW+       +E     R  + G 
Sbjct: 926  TFNSPAGPPIMILSLRAGGTGLNLT-GASVVIHMDRWWNPA-----VENQATDRAYRIGQ 979

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +  V VY LI++ TI+E +   +  K  +   ++   + 
Sbjct: 980  EHDVSVYKLISKGTIEEKINDIIEGKLQLASAVVGTGEA 1018


>gi|148697110|gb|EDL29057.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_c [Mus
           musculus]
          Length = 1087

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 458 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 517

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 518 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 577

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 578 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 632

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 633 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 684


>gi|284041008|ref|YP_003390938.1| SNF2-related protein [Spirosoma linguale DSM 74]
 gi|283820301|gb|ADB42139.1| SNF2-related protein [Spirosoma linguale DSM 74]
          Length = 1003

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 77/210 (36%), Gaps = 26/210 (12%)

Query: 3   QYHKFQ---RELYCD-LQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           QY + +   R L  + ++ E I            K  Q+AN     D      E    K+
Sbjct: 783 QYEEAKSYYRNLILERIEEEGIAKSQMVVLQGLTKLRQIANHPRMVD---AEYEGDSGKL 839

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWN 105
             + + +E        ++V   F   L  +++          +  G T+D+         
Sbjct: 840 DDMLMRLESAMTENHKVLVFSQFIKHLTVVRQYLKEKNIKYAYLDGSTVDRQSQVELFQT 899

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + L      + G G NL    + +     WW+       IE   V R  + G ++ V
Sbjct: 900 DDSVKLFLISLKAGGLGHNLTA-ADYVFILDPWWNPA-----IEAQAVDRAHRIGQQKTV 953

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           F Y  IA+NT++E +L   R K  +   L+
Sbjct: 954 FTYKFIAKNTVEEKILSLQRAKQQLAGSLI 983


>gi|16332119|ref|NP_442847.1| Snf2/Rad54 family helicase [Synechocystis sp. PCC 6803]
 gi|1653748|dbj|BAA18659.1| helicase of the snf2/rad54 family [Synechocystis sp. PCC 6803]
          Length = 1039

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCL--QLANGAVYYDEEKHWKEVH-DEKIKAL 59
             Y +   E    +        +    T+     Q+ N      ++      H   K+  L
Sbjct: 801  LYQQLVEESLQAIADSEGIQRHGLVLTLLTKLKQVCNHPDLLLKKPAITHGHQSGKLIRL 860

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNE 106
              ++E+  +    +++   F S    L+                G   ++    ++ + +
Sbjct: 861  AEMLEEIISEGDRVLIFTQFASWGHLLKPYLEKYFNQEVLYLHGGTPAEQRQALVERFQQ 920

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  L      + G GLNL    N +     WW+       +E     R  + G  R 
Sbjct: 921  DPNSPYLFILSLKAGGTGLNLTR-ANHVFHVDRWWNPA-----VENQATDRAFRIGQTRN 974

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  +   T++E +   +  K  + +  ++A +
Sbjct: 975  VQVHKFVCTGTLEEKINAMMADKQQLAEQTVDAGE 1009


>gi|148697109|gb|EDL29056.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_b [Mus
           musculus]
          Length = 1110

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 465 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 524

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 525 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 584

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 585 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 639

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 640 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 691


>gi|326427315|gb|EGD72885.1| hypothetical protein PTSG_12193 [Salpingoeca sp. ATCC 50818]
          Length = 2049

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 35/231 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------DEEKHWKEV 51
            + Y     + Y  L           S      + +N    +          DE       
Sbjct: 1348 QLYKHALEKNYTVLTNAK-SKKGLKSLLTNLRKCSNHPYLFEGTEPEFPTLDETMERLVK 1406

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K+  ++ ++ K  A+   +++   +   L  L+  F   +                 
Sbjct: 1407 ASGKLLLMDKMLTKLKASGHRVLIFSQWTHVLDILEDLFVYRKHKFYRLDGDTDILDREQ 1466

Query: 100  TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N     +        + G G+NL    + +  +   W+       ++   + R  
Sbjct: 1467 RITDFNRPNSDVFAFLLSTRAGGLGINL-NTADTVFIYDSDWNP-----HMDNQAIARAH 1520

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKETIH 204
            + G KR V VY L+A+ T+DE ++++ R K  + + ++     A+  + + 
Sbjct: 1521 RIGQKRLVMVYRLVAKGTVDEKIVEQARKKLALDEAVVEQKHKAMDAKDLE 1571


>gi|115433988|ref|NP_001041752.1| Os01g0102800 [Oryza sativa Japonica Group]
 gi|15128457|dbj|BAB62641.1| putative DNA repair and recombination protein [Oryza sativa
           Japonica Group]
 gi|20804446|dbj|BAB92143.1| putative DNA repair and recombination protein [Oryza sativa
           Japonica Group]
 gi|39652280|dbj|BAD04853.1| Cockayne syndrome group B [Oryza sativa Japonica Group]
 gi|113531283|dbj|BAF03666.1| Os01g0102800 [Oryza sativa Japonica Group]
          Length = 1187

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
               L    +E       NS        ++ N     + E   +           K+K +
Sbjct: 659 YRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNPERSGKMKVV 718

Query: 60  EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
           E ++   K     +++       L  ++          +              I E+N  
Sbjct: 719 EQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMALIDEFNNT 778

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 779 DEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 832

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 833 VYRLITRGTIEEKVYHRQIYKHFLTNKVLKDPQQR 867


>gi|156098278|ref|XP_001615171.1| helicase [Plasmodium vivax SaI-1]
 gi|148804045|gb|EDL45444.1| helicase, putative [Plasmodium vivax]
          Length = 1399

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 27/224 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    +           +  ++  +  N    +D  +    +          
Sbjct: 562 KLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 621

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   K   + +++       L  +                    D+    I 
Sbjct: 622 KMSLLDKLLPRLKKENSRVLLFSQMTRVLDIIDDYCRWKNYEYLRIDGSTVGDERQIRIN 681

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G
Sbjct: 682 QFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIG 735

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            K+ V VY  + QN+++E +++R   K  +  L++   K    H
Sbjct: 736 QKKKVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNH 779


>gi|145602035|ref|XP_359538.2| hypothetical protein MGG_05239 [Magnaporthe oryzae 70-15]
 gi|145010485|gb|EDJ95141.1| hypothetical protein MGG_05239 [Magnaporthe oryzae 70-15]
          Length = 1163

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 31/223 (13%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HD 53
           + Y +F   +    +     ++           ++ N     +                 
Sbjct: 642 QAYEQFLASQAMDQILSGTRKS---LFGIDYLRKVCNHPDLVEPSLRNDHHYNWGSANKS 698

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            K++ ++ ++   K      ++       L  L+                   +      
Sbjct: 699 GKMQVVKALLQMWKKFGHKTLLFSQGTQMLDILEDFVRKQDDITYLRMDGKTAIKDRQAM 758

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++N    I L        G G NL  G + ++ +   W+        +     R  + 
Sbjct: 759 VDQFNNSPGIDLFLLTTKVGGLGTNLT-GADRVIIYDPDWNPST-----DVQARERAWRL 812

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G K+ V +Y L+   TI+E + QR   K  + + +L    + T
Sbjct: 813 GQKKEVTIYRLMTAGTIEEKIYQRQIFKQFLTNKVLKDPSQRT 855


>gi|160901778|ref|YP_001567359.1| non-specific serine/threonine protein kinase [Petrotoga mobilis SJ95]
 gi|160359422|gb|ABX31036.1| Non-specific serine/threonine protein kinase [Petrotoga mobilis SJ95]
          Length = 1152

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 20/185 (10%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD-- 80
                     Q+ N  V Y ++         K + L  +++    N   +++   +     
Sbjct: 951  ILKMLTSLKQICNHPVNYTKKGVPLPDDSGKTEKLLDLLQNIVDNNEKVVLFTQYKEMGD 1010

Query: 81   ---------LARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGN 130
                     +      F  G    K    I ++      P++     + G GLNL    N
Sbjct: 1011 ILTKILADNIKIEPLFFHGGLNRKKRDKMINDFQTKHRYPIMILSLKAGGTGLNLTA-AN 1069

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++ + LWW+       +E     R  + G  + V V+  I   T +E + + L  K  +
Sbjct: 1070 HVIHYDLWWNPA-----VESQATDRTFRIGQTKDVIVHRFITLETFEEKINEMLEKKKEL 1124

Query: 191  QDLLL 195
             + ++
Sbjct: 1125 SENII 1129


>gi|38233618|ref|NP_939385.1| SNF2/RAD54 family protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38199878|emb|CAE49544.1| SNF2/RAD54 family protein [Corynebacterium diphtheriae]
          Length = 1029

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y  +   +   L       +     S   K  Q+ N   ++  +     +       K+
Sbjct: 798  LYKAYVDSVKTQLDQAEGMNKRGLVLSALTKIKQICNHPAHFLGDGSAMTIKGKHRSGKV 857

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
              L  +I     +   +++   + +    L                 G +       ++E
Sbjct: 858  AELMNLINDAVDSDQKLLIFTQYRAFGDLLVPYLSDYFGTTIPFLHGGVSKTGRDRMVEE 917

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +      P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 918  FQTPDGPPAMILSLKAGGTGLNLTN-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 971

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V VY +I   T++E +   L  K+ +   +++  + 
Sbjct: 972  KDVTVYKMITAGTLEESIQDILDGKTQLASAVVSEGEG 1009


>gi|148548802|ref|YP_001268904.1| non-specific serine/threonine protein kinase [Pseudomonas putida F1]
 gi|148512860|gb|ABQ79720.1| Non-specific serine/threonine protein kinase [Pseudomonas putida F1]
          Length = 1105

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 18/207 (8%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKALEV 61
             +  R+      G            +K  Q+            + +  +          +
Sbjct: 883  DQKVRDEIAR-NGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEML 941

Query: 62   IIEKANAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                +    +++   F S L         R  +              +Q++ +G+  +  
Sbjct: 942  EELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFL 1001

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    + ++ F  WW+        E     R  + G  + VFV+ LI +
Sbjct: 1002 ISLKAGGVGLNLTA-ADTVIHFDPWWNPAS-----ENQATDRAYRIGQDKPVFVFKLITR 1055

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
             T++E +    + K+ +   LL+  + 
Sbjct: 1056 GTVEEKIQLLQQEKAALAASLLDGGQA 1082


>gi|326428031|gb|EGD73601.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 2192

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 34/222 (15%)

Query: 2   KQYHK-FQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWK 49
           K Y    +++   L  +++G +       +  ++  +  N    +D              
Sbjct: 333 KYYKAILEKDVHGLLAEMRGRSKTRL--LNTIMQLRKACNHPYLFDGVEPGPPFTNGPHL 390

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
                K+  L  +++K  A  + +++    N  L  +                       
Sbjct: 391 WQSSGKMIILHKLLQKLKAQGSRVLIFSQMNRMLDLIHDYCFSQGYKVCQIDGSMNALDR 450

Query: 98  PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I+ + E    +        + G GLNL    + ++ +   W+        +   + R
Sbjct: 451 QEAIERFQEDDSDVFAFLLSTRAGGLGLNLTK-ADAVILYDSDWNP-----FADIQAIDR 504

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  +AV VY LI  NT+DE + QR   K  +  L+L  
Sbjct: 505 AHRIGQTKAVKVYRLITDNTVDEHIQQRAEAKLYLNALILQG 546


>gi|52076609|dbj|BAD45511.1| putative RAD26 [Oryza sativa Japonica Group]
          Length = 789

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
               L    +E       NS        ++ N     + E   +           K+K +
Sbjct: 261 YRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNPERSGKMKVV 320

Query: 60  EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
           E ++   K     +++       L  ++          +              I E+N  
Sbjct: 321 EQVLKVWKEQGHRVLLFTQTQQMLDIMENFLTACEYQYRRMDGLTPAKQRMALIDEFNNT 380

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 381 DEIFIFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 434

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 435 VYRLITRGTIEEKVYHRQIYKHFLTNKVLKDPQQR 469


>gi|268610658|ref|ZP_06144385.1| SNF2 domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 417

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 7/174 (4%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y K ++E    L  +++ A N+A    K +QLA+G V YD+      +H+ K+ ALE
Sbjct: 249 IKAYRKLEKEYTLPLLHDDVSAANAAVLCGKLVQLASGCV-YDDGGTPSIIHNRKLDALE 307

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            ++E  N  P++VAY +  +  R++          K    I +WN+GKIP+    P+S G
Sbjct: 308 DLLEAQNGKPVLVAYWYQHERERIK--ARFDVREIKTDQDIADWNDGKIPVALIQPSSAG 365

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           HGLNLQ GG+ +++F++ W LE +QQ   R+      Q      V +++L A  
Sbjct: 366 HGLNLQDGGSTIIWFTMPWSLELYQQTNARLWR----QGQNADTVVIHHLTAAG 415


>gi|126522468|gb|AAI32448.1| Ercc6 protein [Mus musculus]
          Length = 1157

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------DEEKH 47
           K Y  F   + +Y  L GEN       S  V   ++ N    +            DE + 
Sbjct: 446 KVYQNFIDSKAVYRILNGEN----QIFSGLVALRKICNHPDLFSGGPKNASGPPEDELEE 501

Query: 48  WKEVH---DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
            +  H     K+  +E ++         +++       L  L+                 
Sbjct: 502 EQFGHWRRSGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTT 561

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I ++N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 562 TIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 615

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 616 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 665


>gi|300811728|ref|ZP_07092202.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
 gi|300497304|gb|EFK32352.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
          Length = 1185

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHK----FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            K Y       + ++  +       E     +   +  ++        E+   +    EK 
Sbjct: 962  KLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE---SEKR 1018

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
             A   +I+        +++   F S L  L++                   K    +  +
Sbjct: 1019 LACVDLIKSAIDGGHKVLLFSQFTSMLDLLEESLKAEEIVFLRIDGQTPKAKRLTLVNVF 1078

Query: 105  N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N  +    +      + G GLNL  G + ++ +  WW++             R  + G +
Sbjct: 1079 NHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQ-----NQATDRAHRIGQE 1132

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V VY LIA++T++E +L     KS +   +L A
Sbjct: 1133 KKVTVYKLIAKDTVEEAILDLQEAKSQLAQGILTA 1167


>gi|125833380|ref|XP_688972.2| PREDICTED: DNA excision repair protein ERCC-6 [Danio rerio]
          Length = 1390

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 41/231 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------D 43
           + Y  F   +E+Y  L G+        S  +   ++ N    +                +
Sbjct: 751 QVYQTFLDSKEVYQILNGD----MQVFSGLIALRKICNHPDLFTGGPRLLRGIPHDQLTE 806

Query: 44  EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQG 91
           EE         K+  +E ++         +++       L  L+                
Sbjct: 807 EEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGT 866

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I ++N    I +        G G+NL  G N +V +   W+        + 
Sbjct: 867 TTIASRQPLIAQFNQNKDIFVFILTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DT 920

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 921 QARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 971


>gi|326485451|gb|EGE09461.1| DNA repair and recombination protein RAD26 [Trichophyton equinum
           CBS 127.97]
          Length = 1035

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 34/224 (15%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K QR  Y   L    + +       +        ++ N              +  +    
Sbjct: 485 KVQRAAYEAFLASGEMSSILRGRREALYGIDMLRKICNHPDLTQHKVLSTKTDYNYGSGA 544

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDK-DP 98
              K++ ++ ++   K      ++       L  L+               G T  K   
Sbjct: 545 KSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDILERFIRGFDGFNYRRMDGNTPIKVRQ 604

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + E+N +  + +        G G+NL  G + ++ +   W+        +     R  
Sbjct: 605 SMVDEFNNDPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAW 658

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 659 RLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILRDPKQR 702


>gi|298705975|emb|CBJ29096.1| SNF2 family protein [Ectocarpus siliculosus]
          Length = 1288

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 71/251 (28%), Gaps = 62/251 (24%)

Query: 8   QRELYCDLQGENIEAFNSASKTVK-------CLQLANGAVYYDEEKH------------- 47
           QR LY +      E  +  S+T++         +L N                       
Sbjct: 681 QRRLYSEFLEST-EVKSVLSRTMRAFRAIGILRKLCNHPDLVCRFGDSVVTRLASHQIWG 739

Query: 48  ----------------------WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL-- 81
                                  +     K+  L+ I+         +++       L  
Sbjct: 740 GDSDASEKEEDDTAEESKSDNDHEVQRSGKLLVLQQILPLWHKQGHRVLLFSQTRQMLSI 799

Query: 82  --------ARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNIL 132
                               +      I  +N  +   ++     + G G+NL  G + +
Sbjct: 800 IERFVVNNEWSYGRLDGSTPVGNRQTLIDRFNNDESMFIMLLTTRTGGVGVNLT-GADRV 858

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + F   W+              R  + G +R V VY L+   TI+E +  R   K+ + +
Sbjct: 859 ILFDPDWNPSTDM-----QARERSWRVGQRRQVTVYRLVTAGTIEEKIYHRQIFKTALTN 913

Query: 193 LLLNALKKETI 203
            +L   K+  +
Sbjct: 914 RVLQDPKQRRM 924


>gi|254432066|ref|ZP_05045769.1| SNF2 family N-terminal domain protein [Cyanobium sp. PCC 7001]
 gi|197626519|gb|EDY39078.1| SNF2 family N-terminal domain protein [Cyanobium sp. PCC 7001]
          Length = 1033

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 32/224 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHW---------KE 50
            K Y +   +    +    +   +    +   K  Q+ N       E              
Sbjct: 797  KLYSRTVDDSLEAIARSPLGQKHGQVLALLTKLKQICNHPALALGESAEAASSAGPASFA 856

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKD 97
                K++ LE I+E+        ++   F                +         +  + 
Sbjct: 857  ARSAKVQRLEEILEEVIEAGDRALLFTQFAEWGLLLQAHLQKRWRQEVPFLYGSTSKTER 916

Query: 98   PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  + E      L      + G GLNL    + +     WW+       +E     R
Sbjct: 917  QAMVDRFQEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHIDRWWNPA-----VENQATDR 970

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G +  V V+  I   +++E V + +R KS + + ++ + +
Sbjct: 971  AYRIGQQNRVMVHKFITSGSVEEKVDRMIREKSKLAEEIVGSGE 1014


>gi|296415159|ref|XP_002837259.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633120|emb|CAZ81450.1| unnamed protein product [Tuber melanosporum]
          Length = 1362

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 34/226 (15%)

Query: 2   KQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD---- 53
           K Y +        +     G  +     ++  ++  +L N    ++E +           
Sbjct: 732 KLYQQMMNNGILYVNEPDKGGKLGVRGLSNMIMQLRKLCNHPFVFEEVESAINPTKVNND 791

Query: 54  ------EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLD 95
                  K + L+ ++ K       +++ +     +  ++                   D
Sbjct: 792 ALWRTAGKFELLDRLLPKFFATRHRVLMFFQMTQIMNIMEDFLHLRGFRYLRLDGSTKAD 851

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                ++E+N    P  +      + G GLNLQ   + ++ +   W+  +     +    
Sbjct: 852 DRSALLKEFNAPDSPYFIFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQ 905

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R + K  I   ++ A K
Sbjct: 906 DRAHRIGQKNEVRILRLITSNSVEERILERAQYKLDIDGKVIQAGK 951


>gi|15896248|ref|NP_349597.1| SNF2 family DNA/RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15026052|gb|AAK80937.1|AE007796_7 Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum ATCC 824]
 gi|325510403|gb|ADZ22039.1| Superfamily II DNA/RNA helicase, SNF2 family [Clostridium
            acetobutylicum EA 2018]
          Length = 1052

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 76/208 (36%), Gaps = 27/208 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y   +       +G N   F   S   +  Q+ +      E  + K   + K+  L  
Sbjct: 838  KIYRSIEE------KGINNSKFIIFSLLTRLRQICSNPRTVVENYNGK---NAKMDVLMD 888

Query: 62   IIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             I+ +  N   I+V   F S L                      +        E+N+GK 
Sbjct: 889  TIKTSIANRHRILVFSQFTSVLKSIKDKLIEKDIDVMYLDGNTKMKDRFQLADEFNKGKG 948

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL  G +I+V F  WW+       +E     R  + G K+ V +  
Sbjct: 949  EVFLISLKAGGTGLNLT-GADIVVHFDPWWNPA-----VENQASDRAHRIGQKKNVEIIK 1002

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI + TI+E + +  + K  + D +L  
Sbjct: 1003 LITRGTIEEKIYKLQQEKKKMVDNVLGD 1030


>gi|118344288|ref|NP_001071967.1| SWI/SNF protein [Ciona intestinalis]
 gi|70571306|dbj|BAE06719.1| Ci-SWI/SNF [Ciona intestinalis]
          Length = 1003

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------- 42
           K Y    K QRE Y  +  ++I+  N+          +  ++  +  N    +       
Sbjct: 363 KIYTGLSKMQREWYTKILVKDIDIINAAGRTDRVRLLNILMQLRKCCNHPYLFDGAEPGP 422

Query: 43  -DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
                    V+  K+  L+ ++   +     +++       L  L+              
Sbjct: 423 PYTTSEHLVVNSGKLSVLDKLLPKFQEQGDRVLIFSQMTRILDILEDYCMWRGYNYCRLD 482

Query: 92  --RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +     I E+N       +      + G G+NL    NI++ F   W+ +     
Sbjct: 483 GQTPHEDRQRQINEFNRPGSEKFIFMLSTRAGGLGINLMT-ANIVILFDSDWNPQ----- 536

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G K+ V V+ LI +NT++E +++R   K  + ++++   +
Sbjct: 537 VDMQAMDRAHRIGQKKQVMVFRLITENTVEERIIERAEMKLHLDNIVIQQGR 588


>gi|288559877|ref|YP_003423363.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
 gi|288542587|gb|ADC46471.1| helicase SNF2 family [Methanobrevibacter ruminantium M1]
          Length = 698

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 22/212 (10%)

Query: 1   MKQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +K Y+     ++ ++                    Q  N    +      K     K++ 
Sbjct: 471 IKLYNAVLDGIFEEIDELKGIERRGTILKTITSLKQTCNHPAQFLGSGKPKIKESGKMEL 530

Query: 59  LEVIIEKANAA--PIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           L  I+E        +++   +              L R        ++ ++    I  + 
Sbjct: 531 LITILENIMDMDEKVLIFTQYVKMGEIIQDLVSKKLKREVLFLHGSQSRNEKAEIIDRFQ 590

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L A   + G GLNL    + ++ + LWW+       +E     R  + G ++ 
Sbjct: 591 EDDNYKILIATLKTGGVGLNLTA-ASNVIHYDLWWNPA-----VENQATDRVHRIGQEKD 644

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V VY  I + T++E +   ++TK  + +  ++
Sbjct: 645 VMVYRFITKGTLEEEIDSIIKTKLDLAEKAIS 676


>gi|294933057|ref|XP_002780576.1| Chromatin remodelling complex ATPase chain Iswi, putative
           [Perkinsus marinus ATCC 50983]
 gi|239890510|gb|EER12371.1| Chromatin remodelling complex ATPase chain Iswi, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1003

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 3   QYHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHD 53
            Y     +      +  +       +  ++  +  N    ++                + 
Sbjct: 249 LYRDLLMKNTVLSTESLSGHKMRLLNTLMQLRKCCNHPYLFEGMEPGPPYFDGPHLWENS 308

Query: 54  EKIKALEVIIEK------ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKD 97
            K++ ++ ++E+           +++       L  +                   +   
Sbjct: 309 GKLRVVDKLLERLAVPGPQGKNQVLIFTQMTRMLDIMDDYLRLKGYGYCRIDGDTAMSDR 368

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++        +      + G G+NL    N ++ +   ++ +     ++   + R
Sbjct: 369 QAMIDDFTRPDSDKFVFILSTRAGGLGINL-NTANYVIIYDSDFNPQ-----MDLQAIDR 422

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G KR V VY L+ Q+T++E +++R   K  I +L++   K
Sbjct: 423 AHRIGQKRQVTVYRLVTQDTVEEKIVERAAKKMQIDNLVIQKGK 466


>gi|326381489|ref|ZP_08203183.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326199736|gb|EGD56916.1| SNF2-like protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 965

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 27/215 (12%)

Query: 3   QYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y     E      D            +   +  Q+ N   +Y ++              
Sbjct: 730 LYQAVLNELHEALADTGQGGPRRRTVLAALTRLKQICNHPAHYFDDGSGMLRRGRHRSGK 789

Query: 60  EVIIEKA------NAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQ 102
             ++              +V   F +    L                 G + D+    + 
Sbjct: 790 VELLVDVLTTLIAEGDRALVFTQFAAFAELLSGWLEPVLGTAVPVLHGGSSRDQRDAMVA 849

Query: 103 EWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++     P+L A   + G GLN+    N ++    WW+       +E     R  + G 
Sbjct: 850 RFSSPDGPPVLIATLKAGGTGLNMVA-ANHVIHADRWWNPA-----VEDQATDRAYRIGQ 903

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V V   +   T++E + + + +K  +  L L+
Sbjct: 904 TRNVQVRKFVCVGTLEERIDEMVASKRELSRLTLS 938


>gi|300933599|ref|ZP_07148855.1| putative DNA/RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 1052

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIK 57
            Y  +  ++   L+  + +   N     V+  Q+ N   ++  +        E    K+K
Sbjct: 793 LYKAYIDDIEQRLRDRSQDRRGNILGALVRIKQICNHPAHFAGDGSALLKEGEHRSGKVK 852

Query: 58  ALEVIIEKAN--AAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
               I+E+A       ++   F                +       G    K    ++++
Sbjct: 853 RAFEILEQAQREGRKALIFTQFPTFGTMLLPELERIFGQPIPMLHGGVPRKKRADMVRQF 912

Query: 105 N---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               E   P +     + G G+ L    +++V    WW+       +E     R  + G 
Sbjct: 913 QLPGEQGPPAMVLSVRAGGTGITLTE-ASVVVHIDRWWNPA-----VEDQATDRAYRIGQ 966

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R V VY L+A+ T+DE +   +++K  +
Sbjct: 967 NRDVTVYKLVAEGTLDERINDIIQSKREL 995


>gi|66361321|pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
 gi|66361322|pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
          Length = 271

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L+ ++             S  +K  Q+ +                 K+    
Sbjct: 44  MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLK-GGEQSVRRSGKMIRTM 102

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQEWNE 106
            IIE+       I +   F      ++    +                ++D    +  N 
Sbjct: 103 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN 162

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +     + G G+NL    N ++ F  WW+       +E     R  + G  R V 
Sbjct: 163 PSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPA-----VEDQATDRVYRIGQTRNVI 216

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 217 VHKLISVGTLEEKIDQLLAFKRSLFKDIISS 247


>gi|33864422|ref|NP_895982.1| SNF2/helicase domain-containing protein [Prochlorococcus marinus str.
            MIT 9313]
 gi|33641202|emb|CAE22332.1| SNF2 related domain:DEAD/DEAH box helicase [Prochlorococcus marinus
            str. MIT 9313]
          Length = 1099

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 62/217 (28%), Gaps = 26/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK----- 55
             Y     E    +        +        +  Q+ N      +E+   +   ++     
Sbjct: 869  LYRNTVDETLEAIARAPRGQRHGKVLGLLTRLKQICNHPALALKEQTVAKGFMDRSAKLL 928

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEW 104
                 +          ++   F      L+                  +  +    +  +
Sbjct: 929  RLEEILEEVIEAGDRALLFTQFAEWGHLLKAYLQQRWRFEVPFLHGSTSKTERQAMVDRF 988

Query: 105  NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             E      L      + G GLNL    + +     WW+       +E     R  + G  
Sbjct: 989  QEDPRGPQLFLLSLKAGGVGLNLTR-ASHVFHVDRWWNPA-----VENQATDRAYRIGQT 1042

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              V V+  I   +++E + + +R KS + + ++ + +
Sbjct: 1043 SRVMVHKFITSGSVEEKIDRMIREKSRLAEDIIGSGE 1079


>gi|302829332|ref|XP_002946233.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
           nagariensis]
 gi|300269048|gb|EFJ53228.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
           nagariensis]
          Length = 1596

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 64/217 (29%), Gaps = 27/217 (12%)

Query: 6   KFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIK 57
           +  R      +   I   +  +        ++ N     +                 K++
Sbjct: 716 ELYRAYLASTEVGEILEGSRRALCGIDILRKICNHPDLLERVTAQDAEDYGNPARSGKLR 775

Query: 58  ALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
             E ++          ++       L                   G  +   P  I ++N
Sbjct: 776 VAERVLTSWHTARQKALLFCQTQQMLDILEKLVAGRGWSYHRMDGGTPVAVRPRLIDDFN 835

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + +        G G+NL  G   ++ +   W+        +     R  + G   +
Sbjct: 836 TNPDVFVFLLTTKVGGLGVNLT-GATRVMLYDPDWNPST-----DIQARERAWRIGQSHS 889

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V +Y LI   TI+E +  R   KS + + +L   +++
Sbjct: 890 VTIYRLITAGTIEEKIYHRQIYKSFLTNKVLRDPRQK 926


>gi|52840972|ref|YP_094771.1| DNA helicase SNF2/RAD54 family protein [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|54296762|ref|YP_123131.1| hypothetical protein lpp0801 [Legionella pneumophila str. Paris]
 gi|52628083|gb|AAU26824.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750547|emb|CAH11949.1| hypothetical protein lpp0801 [Legionella pneumophila str. Paris]
          Length = 1088

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 17/182 (9%)

Query: 33   LQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------- 82
             Q+          +         K+ AL  +++        ++V   F S L        
Sbjct: 899  RQVCCDPRLLSMSEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLI 958

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                 + ++ +G  P+      + G GLNL    + ++ +  WW+ 
Sbjct: 959  VRQYDYLKLTGQTQNRQALVDQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNP 1017

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +E     R  + G +  VFVY LI   T++E +L     K  + + +L+     
Sbjct: 1018 S-----VEDQATDRTHRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASR 1072

Query: 202  TI 203
            ++
Sbjct: 1073 SM 1074


>gi|310789538|gb|EFQ25071.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1153

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 65/201 (32%), Gaps = 27/201 (13%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDEKIKALEVII--EKANAAPII 72
              +        ++ N     +  K  +            K++ +  ++   K      +
Sbjct: 679 KRQALYGIDILRKICNHPDLVNVRKKGQPGYDWGNPRRSSKLQTVGELLPLWKRFGHKTL 738

Query: 73  VAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWN-EGKIPLLFAHPASCG 120
           +       L  LQ+   +   ++           K    I  +N +  I +      + G
Sbjct: 739 LFSQTKIMLDILQEFIGKMEGMNYLRMDGEVAVEKRQALIDRFNHDPSIHVFLLTTKTGG 798

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL  G   +V +   W+        +     R  + G  + V +Y L+   TI+E +
Sbjct: 799 LGVNLT-GATRIVIYDPDWNPST-----DLQARERAWRLGQTKPVAIYRLMTSGTIEEKI 852

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
             R   K  + + +L   K+ 
Sbjct: 853 YHRQIFKQFMTNKVLKDPKQR 873


>gi|213019863|ref|ZP_03335663.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994547|gb|EEB55195.1| helicase, SNF2 family [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 917

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y +        ++                   Q+ N   ++ ++K        K++ LE
Sbjct: 690 LYQEVVNTTMKKIERSEGIERKGLILKLINALKQVCNHPSHFGKKKRASIEQSGKMQMLE 749

Query: 61  VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW-NE 106
            I+   +      ++   +                          +       + ++ N 
Sbjct: 750 EILIGISELAEKSLIFTQYTEMGEIIARLLEEKFESKVPFLHGSLSRKARDKMVNDFENS 809

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +L     + G GLNL    N ++ + LWW+       +E     R  + G +R V 
Sbjct: 810 FRSNILIVSLKAGGTGLNLTA-ANHVIHYDLWWNPA-----VEAQATDRAYRIGQERNVM 863

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY L++  T +E + + +++K  + +L +++ +
Sbjct: 864 VYRLLSTGTFEERIDEMIQSKKELANLTISSGE 896


>gi|226312228|ref|YP_002772122.1| hypothetical protein BBR47_26410 [Brevibacillus brevis NBRC 100599]
 gi|226095176|dbj|BAH43618.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 952

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 3   QYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEE--KHWKEVHDEKIKA 58
            Y    ++++  ++            +   +  QL +       E     +     K++ 
Sbjct: 713 LYETAIQDMFDRMEKASPMERRGLILTTLTRLKQLCDHPALILNEIATTDEAGRSHKLER 772

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWN 105
           L  +++         ++   +                            +K    I  + 
Sbjct: 773 LLELVDDIRQKKERCLIFTQYIQMGNMLQRVLTREGYGPVYFLNGATKKEKRDEMIARFQ 832

Query: 106 EGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +P      +      + G GLNL    N ++    WW+       +E     R  + 
Sbjct: 833 DPTLPDDERGAIFILSLRAGGTGLNLTE-ANHVIHVDRWWNPA-----VENQATDRAHRI 886

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G +R V VY  I+  TI+E + + +  K ++   ++ 
Sbjct: 887 GQQRDVHVYKFISLGTIEERIDEMMERKLSLSQQIVG 923


>gi|295707193|ref|YP_003600268.1| SNF2 family helicase [Bacillus megaterium DSM 319]
 gi|294804852|gb|ADF41918.1| SNF2 family helicase [Bacillus megaterium DSM 319]
          Length = 876

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  + +  + + +              K   L N    Y +E   K+      K + 
Sbjct: 650 LYQELVQGMLQETEEKTGFERKGIILQTLNKLKLLCNHPALYLKESAAKQTVRRSHKSEK 709

Query: 59  LEVII--EKANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWN 105
           +  ++   +      ++   +             ++           + ++    + ++ 
Sbjct: 710 IIELVESIRTQQESCLIFTQYIETGLMLQRTLEKEINEPVLFLHGSLSKEQRDEMVAQFQ 769

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 770 ARNKAIFILSLRAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAHRIGQNKFV 823

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + TI+E + + +  K  + + L+  
Sbjct: 824 HVHKFITRGTIEEKIDEVINQKQHLNNELIQG 855


>gi|148697108|gb|EDL29055.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_a [Mus
           musculus]
          Length = 1103

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 458 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 517

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 518 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 577

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 578 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 632

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 633 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 684


>gi|149235383|ref|XP_001523570.1| DNA repair and recombination protein RAD26 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146452979|gb|EDK47235.1| DNA repair and recombination protein RAD26 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 1159

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA------VYYDEEKHWKEVHDEK 55
           + Y KF      ++        N         ++ N               +       K
Sbjct: 617 ELYEKFLDS--EEMDSIVKGKRNVLVGVDTLRKICNHPDLIYREALMHRANYGDPSKSGK 674

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARLQKA------------------FPQGRTLD 95
           ++ L+ ++   ++     ++       L  L+K                         + 
Sbjct: 675 MQVLKNLLQLWQSEDHKTLLFCQTRQMLDILEKFVANLHLLGDESKKFNYLRMDGNTPIS 734

Query: 96  KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    +  +N    + +        G G+NL  G + ++ +   W+        +     
Sbjct: 735 RRQQLVDTFNNSPDLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQARE 788

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R  + G K+ + +Y L+   +I+E +  R   K+ +Q+ +L   K+  +
Sbjct: 789 RAWRLGQKKDITIYRLMTTGSIEEKIYHRQIFKTFLQNKILKDPKQRRL 837


>gi|54293719|ref|YP_126134.1| hypothetical protein lpl0772 [Legionella pneumophila str. Lens]
 gi|53753551|emb|CAH15006.1| hypothetical protein lpl0772 [Legionella pneumophila str. Lens]
          Length = 1088

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 17/182 (9%)

Query: 33   LQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------- 82
             Q+          +         K+ AL  +++        ++V   F S L        
Sbjct: 899  RQVCCDPRLLSMSEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLI 958

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                 + ++ +G  P+      + G GLNL    + ++ +  WW+ 
Sbjct: 959  VRQYDYLKLTGQTQNRQALVDQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNP 1017

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +E     R  + G +  VFVY LI   T++E +L     K  + + +L+     
Sbjct: 1018 S-----VEDQATDRTHRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASR 1072

Query: 202  TI 203
            ++
Sbjct: 1073 SM 1074


>gi|260818894|ref|XP_002604617.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
 gi|229289945|gb|EEN60628.1| hypothetical protein BRAFLDRAFT_126777 [Branchiostoma floridae]
          Length = 1277

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 23/214 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
             Y    + +   L     +               Q+ N    + +  +       K+K L
Sbjct: 1052 LYESVVQNMVKKLAEAKEKKERTGVIFQTMTFLKQICNHPANFTKNSNRDIQASGKMKVL 1111

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWN 105
              +++        +++   +   +  + +                     +D  T     
Sbjct: 1112 IDLLQPILQQGEKVLIFSQYVQMIKLMAQMVEAHFKVKPLIFEGSMSQQKRDEATTAFQT 1171

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    ++     + G GLNL    N ++ + LW++  +     E     R  + G  + V
Sbjct: 1172 QPHRQIMIVSLQAGGVGLNLTA-ANHVIHYDLWFNPAK-----ENQATDRAFRIGQTKTV 1225

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            FVY  I++NT +E +   L  K  + DL + A +
Sbjct: 1226 FVYRFISENTFEEKINVMLEKKKDLSDLSVQAGE 1259


>gi|46447118|ref|YP_008483.1| hypothetical protein pc1484 [Candidatus Protochlamydia amoebophila
            UWE25]
 gi|46400759|emb|CAF24208.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
            UWE25]
          Length = 1256

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 79/213 (37%), Gaps = 20/213 (9%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEV 61
             + +R L  DL+ +   I   +  +      Q+ N   V+      +++    K +    
Sbjct: 1022 EQRKRHLMQDLKDDQTPIPYLHIFALLSSLKQICNHPAVHLKNPGDYQKYSSGKWELFIE 1081

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEGKIP 110
            ++ +   +   +++   +   L  ++             +G T ++     +  ++    
Sbjct: 1082 LLREARESQQKVVIFSQYLGMLDIIENYLNDQKIGYASIRGSTQNRKEQLQKFNHDPSCE 1141

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G++L    ++++ +  WW+        E     R  + G  + V V+ L
Sbjct: 1142 VFVGSLQAAGLGIDLTA-ASVVIHYDRWWNAAR-----ENQATDRVHRIGQMKGVQVFKL 1195

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + + T +E +   +  K  + + ++    + T+
Sbjct: 1196 VTKGTFEEKIDAMINRKGQLMEEIIGVDDQNTL 1228


>gi|257126260|ref|YP_003164374.1| non-specific serine/threonine protein kinase [Leptotrichia buccalis
            C-1013-b]
 gi|257050199|gb|ACV39383.1| Non-specific serine/threonine protein kinase [Leptotrichia buccalis
            C-1013-b]
          Length = 1172

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 21/212 (9%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y K  +                 +   K  Q+ N    + E+   +     K++ L  ++
Sbjct: 956  YIKKAKSEMKKFNENENNRMKILAILTKLRQICNSPTLFKEDYKGEV---AKLEVLRDLL 1012

Query: 64   EK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
                 N   +++   F   L                        +      ++N G+  +
Sbjct: 1013 PDITENGHRLLIFSQFVGTLKEIEKELVNMGIEYFYIDGSVKSKERVDICNKFNAGERQV 1072

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G GLNL  G ++++ +  WW++      +E     R  + G K++V V  L+
Sbjct: 1073 VLISLKAGGTGLNL-VGADVVIHYDPWWNIA-----VENQASDRAYRIGQKKSVQVIKLV 1126

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + TI+E +++    K  + + LL +   E +
Sbjct: 1127 TEGTIEEKIIKIQENKRQLSENLLESKDGEKV 1158


>gi|242056785|ref|XP_002457538.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor]
 gi|241929513|gb|EES02658.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor]
          Length = 1208

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
               L    +E       NS        ++ N     + E   +           K+K +
Sbjct: 681 YRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREHAAQNPDYGNPERSGKMKVV 740

Query: 60  EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
           E ++   K     +++       L  L+          +              I E+N  
Sbjct: 741 EQVLKVWKDQGHRVLLFTQTQQMLDILENFLTACDYQYRRMDGLTPAKQRMALIDEFNNT 800

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +I +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 801 DEIFVFILTTKVGGLGTNLT-GANRIIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 854

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY LI + TI+E V  R   K  + + +L   +++
Sbjct: 855 VYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQK 889


>gi|149411093|ref|XP_001509678.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1
           [Ornithorhynchus anatinus]
          Length = 1143

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 499 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 558

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++ K     + +++       L  L+             
Sbjct: 559 PPYTTDTHLVNNSGKMVALDKLLSKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 618

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 619 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 673

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT+++ +++R   K  +  +++   +
Sbjct: 674 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEDRIVERAEIKLRLDSIVIQQGR 725


>gi|260890109|ref|ZP_05901372.1| hypothetical protein GCWU000323_01271 [Leptotrichia hofstadii
           F0254]
 gi|260860132|gb|EEX74632.1| putative SNF2 family N- domain protein [Leptotrichia hofstadii
           F0254]
          Length = 988

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 17/210 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K  +                 +   K  Q+ N    + E+   +    E ++ L   I
Sbjct: 772 YIKKAKSEMKKFNENENNRMKILAILTKLRQICNSPTLFKEDYKGEVAKLEVLRDLMPDI 831

Query: 64  EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            + N   +++   F   L                        +      ++N G+  ++ 
Sbjct: 832 IE-NGHRLLIFSQFVGTLKEIEKELENMGIEYFYIDGSVKSKERVDICNKFNAGERQVVL 890

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL  G ++++ +  WW++      +E     R  + G K++V V  L+ +
Sbjct: 891 ISLKAGGTGLNL-VGADVVIHYDPWWNIA-----VENQASDRAYRIGQKKSVQVIKLVTE 944

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            TI+E +++   +K  + + LL     E +
Sbjct: 945 GTIEEKIIKIQESKRKLSENLLENKDGEKV 974


>gi|241950892|ref|XP_002418168.1| ATP-dependent helicase, putative; SWI/SNF chromatin remodelling
            complex protein, putative; SWI/SNF complex component,
            putative; transcription regulatory protein, putative
            [Candida dubliniensis CD36]
 gi|223641507|emb|CAX43468.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1663

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            K Y +  R         +     +   N+ ++ ++  ++ N    Y+E +H         
Sbjct: 1008 KLYQQMLRYNMLYAGDPSNGSVPVTIKNANNQIMQLKKICNHPFVYEEVEHLINPTIDTN 1067

Query: 48   -------------WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
                          K +   K    +V+I       + +   F             G   
Sbjct: 1068 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRDMKYMRLDGGTKA 1127

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1128 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1181

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1182 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1228


>gi|237844775|ref|XP_002371685.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
 gi|211969349|gb|EEB04545.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin, putative [Toxoplasma gondii ME49]
          Length = 1249

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           + Y     +    LQG          +  ++  +  N    +D                +
Sbjct: 575 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIEN 634

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++  + ++ +        ++       +  L+                 + D+    
Sbjct: 635 AGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDRQ 694

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +N     IP+      + G G+NL    + ++ +   W+ +     ++   + R  +
Sbjct: 695 IEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----VDLQAMDRVHR 748

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K AV VY L+ ++TI++ +++R   K  +   ++   +
Sbjct: 749 IGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQQGR 789


>gi|323451886|gb|EGB07762.1| hypothetical protein AURANDRAFT_37691 [Aureococcus anophagefferens]
          Length = 615

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKALEVIIEK--ANAAPIIVAYHF 77
           S  ++  +  N    ++       V          K+  L+ ++ K  A     ++   F
Sbjct: 285 SLLMQLRKCCNHPYLFEGADPDPGVTDDALVEASGKLHVLDRLLTKLKAKGHRCVLFSQF 344

Query: 78  NSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNL 125
            S L  L                     +    IQ +N     +        + G G+NL
Sbjct: 345 TSTLDLLDDVLRYRGYEFSRLDGSTNRVQRTVDIQAFNAPGSGVFLFLMSTRAGGLGVNL 404

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           Q   +  + F   W+ +      +   + R  + G  + V VY L+ + T++E ++QR  
Sbjct: 405 QT-ADTCILFDSDWNPQA-----DAQAMARVHRIGQTKPVHVYRLVTKGTVEERIVQRAE 458

Query: 186 TKSTIQDLL 194
            K  +  ++
Sbjct: 459 KKLYLDSMV 467


>gi|19075591|ref|NP_588091.1| SNF2 family helicase Rhp26 [Schizosaccharomyces pombe 972h-]
 gi|74698399|sp|Q9UR24|RHP26_SCHPO RecName: Full=DNA repair protein rhp26; AltName: Full=RAD26 homolog
 gi|5902438|dbj|BAA84456.1| Rhp26 [Schizosaccharomyces pombe]
 gi|6562902|emb|CAB62827.1| SNF2 family helicase Rhp26 [Schizosaccharomyces pombe]
          Length = 973

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 34/224 (15%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------DEEKHWK 49
           K Y  F +  ++   L G+               ++ N                     +
Sbjct: 567 KAYQDFLQGSDMQKILNGK----RQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGDPE 622

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDP 98
           +    K+    + + K      ++       L                      ++    
Sbjct: 623 KSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQ 682

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  +N      +        G G+NL  G + ++ F   W+        +     R  
Sbjct: 683 DLVDNFNKNEYFDVFLLTTRVGGLGVNLT-GADRVILFDPDWNPST-----DAQARERAW 736

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 737 RLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 780


>gi|296220127|ref|XP_002756186.1| PREDICTED: DNA excision repair protein ERCC-6 [Callithrix jacchus]
          Length = 1490

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  +   ++ N    +               +E
Sbjct: 772 KVYQNFIDSKEVYRILNGE----MQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEE 827

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 828 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTT 887

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N +V +   W+        +  
Sbjct: 888 TIASRQPLITRYNEDKSIFVFLLTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQ 941

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 942 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|311271511|ref|XP_003133156.1| PREDICTED: DNA excision repair protein ERCC-6-like [Sus scrofa]
          Length = 1481

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   +E+Y  L GE        S  V   ++ N    +               +E
Sbjct: 763 KVYQNFIDSKEVYRILNGE----MQIFSGLVALRKICNHPDLFSGGPKNFKGIPGEELEE 818

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 819 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTT 878

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I  +N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 879 TIASRQPLITRYNEDASIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 932

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 933 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 982


>gi|313676698|ref|YP_004054694.1| snf2-related protein [Marivirga tractuosa DSM 4126]
 gi|312943396|gb|ADR22586.1| SNF2-related protein [Marivirga tractuosa DSM 4126]
          Length = 976

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 76/207 (36%), Gaps = 20/207 (9%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +K Y  F+  +  +++ + I +          +  Q+AN     D E        E +  
Sbjct: 760 VKNY--FRDMILDEIEKKGIRSSQMILLQGLTQLRQIANHPKMVDPEYQGDSGKMEDVTH 817

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKI 109
           +   I       +++   F   L+  ++   +         G T D+            +
Sbjct: 818 MLTSIIS-EGHKVLIFSQFVKHLSLFKEFMERSHIKYAYLDGTTKDRQKQVKLFQENQDL 876

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    + +     WW+    QQ ++R       + G K+ VF Y 
Sbjct: 877 SVFLISLKAGGLGLNLTA-ADYVFLLDPWWNPAIEQQAVDR-----AHRIGQKQQVFTYK 930

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            I +NT++E +L     K T+   L++
Sbjct: 931 FITKNTVEEKILALQEKKLTLARDLIS 957


>gi|66361330|pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
          Length = 500

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 23/211 (10%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L+ ++             S  +K  Q+ +                 K+    
Sbjct: 273 MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLK-GGEQSVRRSGKMIRTM 331

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCTIQEWNE 106
            IIE+       I +   F      ++    +                ++D    +  N 
Sbjct: 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN 391

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +  +     + G G+NL    N ++ F  WW+       +E     R  + G  R V 
Sbjct: 392 PSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPA-----VEDQATDRVYRIGQTRNVI 445

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 446 VHKLISVGTLEEKIDQLLAFKRSLFKDIISS 476


>gi|322701606|gb|EFY93355.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Metarhizium acridum CQMa 102]
          Length = 1416

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +          D +G    A   ++  ++  +L N    +DE ++           
Sbjct: 783  KLYKQMVTHNKLVVSDGKGGKTNARGLSNMIMQLRKLCNHPFVFDEVENVMNPMSISNDL 842

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +   + +  ++                   D+
Sbjct: 843  LWRTAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRKFEYLRLDGTTKSDE 902

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 903  RSDLLKEFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1001


>gi|296131142|ref|YP_003638392.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
 gi|296022957|gb|ADG76193.1| SNF2-related protein [Cellulomonas flavigena DSM 20109]
          Length = 1096

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 69/213 (32%), Gaps = 21/213 (9%)

Query: 2    KQYHK-FQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    QRE   L   L   +              +LA  A    +   +  V   K+ 
Sbjct: 874  RAYDTHLQRERSRLLGLLDDFDANRLAIFRSLTTLRRLALDASLV-DPDRYASVPSSKLD 932

Query: 58   ALEVII--EKANAAPIIVAYHFNSDLARLQKAF--------PQGRTLDKDPCTIQEWNEG 107
            AL   +    A     +V   F   L  +                   +    +  +  G
Sbjct: 933  ALLDQLAPVAAEGHRALVFSQFTGYLRLVADRCRTAGLAYEYLDGRTRRRGDVVDRFRTG 992

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              PL      + G GLNL    + +     WW+    QQ ++R       + G  R V V
Sbjct: 993  SAPLFLVSLRAGGFGLNLTE-ADYVYLLDPWWNPAVEQQAVDR-----THRIGQDRKVMV 1046

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              L+A  TI+E V+     K  + D +L   ++
Sbjct: 1047 NRLVAAGTIEEKVMALAARKRAVFDAVLGDDEQ 1079


>gi|257069450|ref|YP_003155705.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
 gi|256560268|gb|ACU86115.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
            faecium DSM 4810]
          Length = 1110

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 3    QYH---KFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + +R+    L   +++               +A       + + + +V   K++
Sbjct: 890  VYDSVLQRERKKVLGLIDTDLDRSRFIVFRSLTLLRMMALDPSLV-DPEAYADVPSSKLE 948

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
            AL   +E+   +   +++   F S L         R  +      +       +  + EG
Sbjct: 949  ALFDRLEEVIGDGHRVLLFSQFTSYLDQVASELERREVRYAHLDGSTRDRDAAVAGFREG 1008

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GL L    + +     WW+        E   V R  + G  R V V
Sbjct: 1009 DAPVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPAA-----ENQAVDRAHRIGQDRTVMV 1062

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            Y +IA++TI+E VL   R K+ + D L +  + 
Sbjct: 1063 YRMIAEDTIEEKVLALQRRKAELFDALTDGGEA 1095


>gi|169349519|ref|ZP_02866457.1| hypothetical protein CLOSPI_00240 [Clostridium spiroforme DSM 1552]
 gi|169293594|gb|EDS75727.1| hypothetical protein CLOSPI_00240 [Clostridium spiroforme DSM 1552]
          Length = 1064

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +   +L   L  E I+ F   S   +  QL           +  +    K+KA   II+K
Sbjct: 850  QINDKLKSALDIEQIDKFQILSMMTRLRQLCCEPRILY---NDIQEPSSKMKACLDIIKK 906

Query: 66   --ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
               N   +++   F S L                        K    +  +      +  
Sbjct: 907  AKENKQKVLLFSSFTSSLEFIEKELRKDDISYYVLTGATNKIKRHQLVNAFQNDNTNVFL 966

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +I++ +  WW++             R  + G    V VY LI +
Sbjct: 967  ISLKAGGTGLNLTA-ASIVIHYDPWWNMSAQ-----NQATDRAYRIGQVNNVQVYKLIMK 1020

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            N+I+E + +    K  + ++ + 
Sbjct: 1021 NSIEEKIQKLQEQKQDLSNIFIE 1043


>gi|221480872|gb|EEE19293.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           GT1]
 gi|221501605|gb|EEE27375.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           VEG]
          Length = 1200

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           + Y     +    LQG          +  ++  +  N    +D                +
Sbjct: 526 QLYKDLLTKNVAALQGAEGAGRTQLLNLAMQLRKACNHPYLFDGYESEHADPFGEHVIEN 585

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++  + ++ +        ++       +  L+                 + D+    
Sbjct: 586 AGKLRFCDRLLRRLIQENRRCLIFTQMTKMIDILEDYCRIRLFKYCRIDGNTSGDERDRQ 645

Query: 101 IQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+ +N     IP+      + G G+NL    + ++ +   W+ +     ++   + R  +
Sbjct: 646 IEAFNAPGSDIPIFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----VDLQAMDRVHR 699

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K AV VY L+ ++TI++ +++R   K  +   ++   +
Sbjct: 700 IGQKSAVNVYRLVHEHTIEQKIIERAMLKLQLDTAIIQQGR 740


>gi|323530052|ref|YP_004232204.1| SNF2-like protein [Burkholderia sp. CCGE1001]
 gi|323387054|gb|ADX59144.1| SNF2-related protein [Burkholderia sp. CCGE1001]
          Length = 1175

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 76/255 (29%), Gaps = 63/255 (24%)

Query: 3    QYH----KFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKE------ 50
             Y       Q ++   +  + +   +       +K  Q+             +       
Sbjct: 903  LYETVRTAMQEKVRAAVSAQGLARSHIIVLDALLKLRQVCCDPRLVRTLHGAEHSAADSA 962

Query: 51   -----------------------------------VHDEKIKALEVIIEK--ANAAPIIV 73
                                                   K+  L  ++ +       +++
Sbjct: 963  GEGADVSAGEAVKTHENSSDAPLRSSDKAERGARTTRSAKLDLLLSMLPELIEEGRRVLL 1022

Query: 74   AYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               F   LA + +A  +                  ++ +  GK+PL      + G GLNL
Sbjct: 1023 FSQFTGMLALIAEALDEAAIPYVILTGDTADRITPVERFQHGKVPLFLISLKAGGVGLNL 1082

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                + ++ +  WW+        E     R  + G  + VFVY LIA  +I+E +++   
Sbjct: 1083 TA-ADTVIHYDPWWNPAA-----ENQATDRAHRLGQDKPVFVYKLIAAGSIEEKIVELQE 1136

Query: 186  TKSTIQDLLLNALKK 200
             K+ + D +L+    
Sbjct: 1137 QKAGLADSILSEDAA 1151


>gi|302308944|ref|NP_986109.2| AFR562Cp [Ashbya gossypii ATCC 10895]
 gi|299790868|gb|AAS53933.2| AFR562Cp [Ashbya gossypii ATCC 10895]
          Length = 1445

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
            K Y +  +     +  +             ++ ++  ++ N    ++E +     +    
Sbjct: 816  KLYEQMLKHRRLFVVDDPSSKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPNRETN 875

Query: 54   -------EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
                    K + LE I+ K   +   +++ +     +  ++                   
Sbjct: 876  ANIWRVAGKFELLEKILPKFKASGHRVLIFFQMTQIMDIMEDFLRFCDMKYLRLDGHTKS 935

Query: 96   -KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  + ++N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 936  DDRTALLNKFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 989

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 990  QDRAHRIGQKNEVRILRLITDNSVEEVILERAHRKLDIDGKVIQAGK 1036


>gi|182416600|ref|ZP_02948017.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237669036|ref|ZP_04529020.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182379558|gb|EDT77042.1| SWF/SNF family helicase [Clostridium butyricum 5521]
 gi|237657384|gb|EEP54940.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1077

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELY---CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            + Y ++ + L     +            S   K  Q+        +  +       KI A
Sbjct: 855  ETYAEYAKNLIQKKVESDEFKKSKIEILSYVTKLRQICLDPSVIMDNYNGT---SGKIDA 911

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
            L  ++E+       ++V   F S L                     T  +    + E+N+
Sbjct: 912  LIELLEQSIEGDHKVLVFSQFTSVLKNISTILKENNMSYCYLDGSMTSSERMKMVNEFND 971

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   +      + G GLNL    +I++ F  WW+       +E     R  + G K  V 
Sbjct: 972  GNKNIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQATDRAHRLGQKNVVE 1025

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA  TI+E ++    +K  + D +L+ 
Sbjct: 1026 VIKLIASGTIEEKIIDLQNSKRELIDKVLSD 1056


>gi|66359998|ref|XP_627177.1| SNF2L ortholog with a SWI/SNF2 like ATpase and a Myb domain
           [Cryptosporidium parvum Iowa II]
 gi|46228591|gb|EAK89461.1| SNF2L ortholog with a SWI/SNF2 like ATpase and a Myb domain
           [Cryptosporidium parvum Iowa II]
          Length = 1308

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y +        L   +       +  ++  +  N    +D         E        
Sbjct: 455 KIYSELLTRNLDVLNSASSNKTQMLNLLMQLRKTCNHPYLFDGVEPGPPYVEGFHMVEAS 514

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            K+  L  ++ K  +  + +++       L  +                     +    I
Sbjct: 515 GKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWCGYPYCRIDGSTPGIERQERI 574

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N+      +      + G G+NL    ++++ F   ++ +     ++   + R  + 
Sbjct: 575 DIFNKEGSEKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQ-----MDLQAMDRAHRI 628

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+ V VY  + + T++E +++R   K  +  L++ 
Sbjct: 629 GQKKPVTVYRFVTEKTVEERIVERAAKKLKLDSLIIQ 665


>gi|229489289|ref|ZP_04383153.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
 gi|229323782|gb|EEN89539.1| SNF2 family helicase [Rhodococcus erythropolis SK121]
          Length = 1060

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 22/209 (10%)

Query: 3    QYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y    + +R+    L  + +   F          QL+      DEE     V   K+ A
Sbjct: 842  IYDTHLQRERQKILGLLDDVDKNRFTILQSLTLLRQLSLDVSLVDEESG--PVPSAKVDA 899

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            L   ++         ++   F   L                   +       ++E+  G 
Sbjct: 900  LVEQLDDVIAGGHRALIFSQFTGFLGSVRNRLDEERIPYSYLDGSTRNRGEVLEEFKSGA 959

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +P+      + G GLNL    +       WW+        E   V R  + G  R V VY
Sbjct: 960  VPVFLISLKAGGFGLNLTE-ADYCFILDPWWNPAA-----EAQAVDRTHRIGQTRNVMVY 1013

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LIA++TI+E V+     KS +   +++A
Sbjct: 1014 RLIAKDTIEEKVMALKAKKSALFSNVMDA 1042


>gi|124487019|ref|NP_001074690.1| DNA excision repair protein ERCC-6 [Mus musculus]
 gi|189442813|gb|AAI67234.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6 [synthetic construct]
          Length = 1481

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------DEEKH 47
           K Y  F   + +Y  L GEN       S  V   ++ N    +            DE + 
Sbjct: 770 KVYQNFIDSKAVYRILNGEN----QIFSGLVALRKICNHPDLFSGGPKNASGPPEDELEE 825

Query: 48  WKEVH---DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
            +  H     K+  +E ++         +++       L  L+                 
Sbjct: 826 EQFGHWRRSGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTT 885

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I ++N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 886 TIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 939

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 940 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 989


>gi|68466749|ref|XP_722570.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|46444555|gb|EAL03829.1| hypothetical protein CaO19.1526 [Candida albicans SC5314]
 gi|74099650|gb|AAZ99066.1| Swi/Snf core member protein [Candida albicans]
          Length = 1690

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            K Y +  R               +   N+ ++ ++  ++ N    Y+E ++    +    
Sbjct: 1035 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1094

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                    K + L+ ++ K       +++ +     +                   G   
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1154

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1155 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255


>gi|238882009|gb|EEQ45647.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            albicans WO-1]
          Length = 1680

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            K Y +  R               +   N+ ++ ++  ++ N    Y+E ++    +    
Sbjct: 1027 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1086

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                    K + L+ ++ K       +++ +     +                   G   
Sbjct: 1087 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1146

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1147 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1200

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1201 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1247


>gi|220679201|emb|CAX12774.1| novel protein similar to H.sapiens ERCC6, excision repair
           cross-complementing rodent repair deficiency,
           complementation group 6 (ERCC6) [Danio rerio]
          Length = 559

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 41/231 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------D 43
           + Y  F   +E+Y  L G+        S  +   ++ N    +                +
Sbjct: 309 QVYQTFLDSKEVYQILNGD----MQVFSGLIALRKICNHPDLFTGGPRLLRGIPHDQLTE 364

Query: 44  EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQG 91
           EE         K+  +E ++         +++       L  L+                
Sbjct: 365 EEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGT 424

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I ++N    I +        G G+NL  G N +V +   W+        + 
Sbjct: 425 TTIASRQPLIAQFNQNKDIFVFILTTRVGGLGVNLT-GANRVVIYDPDWNPST-----DT 478

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 479 QARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 529


>gi|148360611|ref|YP_001251818.1| SNF2/RAD54 family transporter domain-containing protein [Legionella
            pneumophila str. Corby]
 gi|148282384|gb|ABQ56472.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila str. Corby]
          Length = 1088

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 33   LQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------- 82
             Q+          +         K+ AL  +++        ++V   F S L        
Sbjct: 899  RQVCCDPRLLSMSEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLI 958

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                 ++++ +G  P+      + G GLNL    + ++ +  WW+ 
Sbjct: 959  ARQYDYLKLTGQTQNRQALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNP 1017

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +E     R  + G +  VFVY LI   T++E +L     K  + + +L+     
Sbjct: 1018 S-----VEDQATDRTHRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASR 1072

Query: 202  TI 203
            ++
Sbjct: 1073 SM 1074


>gi|307609532|emb|CBW99030.1| hypothetical protein LPW_08151 [Legionella pneumophila 130b]
          Length = 1088

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 33   LQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------- 82
             Q+          +         K+ AL  +++        ++V   F S L        
Sbjct: 899  RQVCCDPRLLSMSEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLI 958

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                 ++++ +G  P+      + G GLNL    + ++ +  WW+ 
Sbjct: 959  ARQYDYLKLTGQTQNRQALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNP 1017

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +E     R  + G +  VFVY LI   T++E +L     K  + + +L+     
Sbjct: 1018 S-----VEDQATDRTHRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASR 1072

Query: 202  TI 203
            ++
Sbjct: 1073 SM 1074


>gi|296106323|ref|YP_003618023.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila 2300/99 Alcoy]
 gi|295648224|gb|ADG24071.1| DNA helicase, SNF2/RAD54 family domain protein [Legionella
            pneumophila 2300/99 Alcoy]
          Length = 1088

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 33   LQLANGAVYYDEEKHWK-EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------- 82
             Q+          +         K+ AL  +++        ++V   F S L        
Sbjct: 899  RQVCCDPRLLSMSEAEIAHGTSCKLDALMELLDNLVEEGRRVLVFSQFTSMLKLIEELLI 958

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                 ++++ +G  P+      + G GLNL    + ++ +  WW+ 
Sbjct: 959  ARQYDYLKLTGQTQNRQALVEQFQQGDTPIFLISLKAGGTGLNLTR-ADTVIHYDPWWNP 1017

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +E     R  + G +  VFVY LI   T++E +L     K  + + +L+     
Sbjct: 1018 S-----VEDQATDRTHRIGQESPVFVYKLITSGTVEEAILGMQEKKRQLVEGILSTDASR 1072

Query: 202  TI 203
            ++
Sbjct: 1073 SM 1074


>gi|262050608|ref|NP_444353.3| probable global transcription activator SNF2L1 [Mus musculus]
 gi|81911462|sp|Q6PGB8|SMCA1_MOUSE RecName: Full=Probable global transcription activator SNF2L1;
           AltName: Full=ATP-dependent helicase SMARCA1; AltName:
           Full=DNA-dependent ATPase SNF2L; AltName:
           Full=Nucleosome-remodeling factor subunit SNF2L;
           AltName: Full=SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 1
 gi|34783716|gb|AAH57115.1| Smarca1 protein [Mus musculus]
 gi|123123060|emb|CAM19308.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1046

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 592 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 643


>gi|296120640|ref|YP_003628418.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296012980|gb|ADG66219.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 674

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 23/205 (11%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E    L   G++I   +     ++  Q+ N      E   +     ++++A   
Sbjct: 446 YDTAEKEGVIQLNEMGDSISIQHVFELVLRLKQITNWDPLTGESAKF-----DRLEADME 500

Query: 62  IIEKANAAPIIVAYHFNSDLA-------RLQKAFPQGRTLDK-DPCTIQEWNEGKIP-LL 112
            +  A+    I+   +   L        R       G   +K     ++++ E     ++
Sbjct: 501 EV-AASGGKAILFSQWTKTLDFLKEKLERFGPLVYHGGIPNKLREPVLKQFKEDPTKHII 559

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
               A+   GLNLQ+    +  +  WW+       IE   + R  + G K  V V   I+
Sbjct: 560 LMSYATGAVGLNLQF-AGYVFLYDRWWNPA-----IEDQAINRAHRIGCKSQVIVTRFIS 613

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           ++TI+E + + L  K  +   +L  
Sbjct: 614 KDTIEEKIDRVLTEKRELFRAILGD 638


>gi|331238296|ref|XP_003331803.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309310793|gb|EFP87384.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1611

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 79/226 (34%), Gaps = 31/226 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHD 53
           Y       Y  L   +    +  +  ++  + +N    +   +   +          V+ 
Sbjct: 594 YKAILTRNYAALASSD-SQVSLLNIAMELKKASNHPFLFPGAEPMTDSKEAALRGVVVNS 652

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+  L+ ++   KA    +++       L  +                    ++    I
Sbjct: 653 GKMILLDKLLTRLKAEGHRVLIFSQMVRMLDIMSDYMSYRGYIFQRLDGTVPSEERRKAI 712

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N    P         + G G+NL    + ++ F   W+ +      +   + R  + 
Sbjct: 713 GHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARAHRI 766

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G K  V VY L+ ++T++E VL+R + K  ++  ++N +     HV
Sbjct: 767 GQKNHVNVYRLVTKDTVEEDVLERAKRKMILEYAIINQMDTSGKHV 812


>gi|300797826|ref|NP_001178272.1| DNA excision repair protein ERCC-6 [Bos taurus]
          Length = 1481

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD---------------E 44
           K Y  F   +E+Y  L GE        S  V   ++ N    +                E
Sbjct: 764 KVYQNFIDSKEVYRILNGE----MQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGE 819

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 820 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTT 879

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +      I  +N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 880 AIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 933

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 934 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 983


>gi|50289791|ref|XP_447327.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526637|emb|CAG60264.1| unnamed protein product [Candida glabrata]
          Length = 1071

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 35/225 (15%)

Query: 6   KFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEE------KHWKEVHD 53
           +FQR  Y +    +          +         ++ N     D +       +      
Sbjct: 589 EFQRRKYLEFLSSDELSQIKGGKRHVLYGIDILRKICNHPDLLDRDYIKNTSGYGDPKRS 648

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------------- 96
            K++ ++ ++   K+     ++       L  L++                         
Sbjct: 649 GKMQVVKQLLKLWKSEGHKTLLFTQSRQMLDILEEFIKFKEPELSDIRYLRMDGTTSIQV 708

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N     +        G G+NL  G N ++ +   W+        +     R 
Sbjct: 709 RQTLVDRFNNESYDVFLLTTRVGGLGVNLT-GANRIIIYDPDWNPST-----DLQARERA 762

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR V +Y L+   TI+E +  R   K  + + +L+  K++
Sbjct: 763 WRIGQKREVSIYRLMISGTIEEKIYHRQIFKQFLMNKVLSDPKQK 807


>gi|168705379|ref|ZP_02737656.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 612

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 23/204 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y + + +    L   G+ I   +     ++  Q+ N      E     ++  +  +  E
Sbjct: 390 AYVRAENDGVIQLNALGDTITVQHVFQLVMRLKQICNFDPLTGESAKLVQLLSDMEEVAE 449

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWN-EGKIPL 111
                 +    I+   +   L  L K         +       +    +  +  +    +
Sbjct: 450 ------SGRKAIIFSQWVEPLEVLAKALAKYGPLQYHGKIPQPQRTPILDRFKSDPSAHV 503

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ+  N +  F  WW+       IE   + R  + G K  V V   +
Sbjct: 504 LLMSYGTGSVGLNLQFT-NYVFLFDRWWNPA-----IEDQAINRAHRLGQKHPVTVTRFL 557

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
           +  TI+  +   L  K  + + L+
Sbjct: 558 SGGTIEGRIADILDAKRKVFNDLI 581


>gi|309774808|ref|ZP_07669829.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917366|gb|EFP63085.1| Snf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 520

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 21/193 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIV 73
           +G         S   +  QL        E  +       KI A    I   + +   +++
Sbjct: 319 KGFENSKIMILSMLTRLRQLCCDPRLLYENYNGVG---AKISACMEFIENCRESGKKVLL 375

Query: 74  AYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
              F S L                        +    +  +N    P+      + G GL
Sbjct: 376 FSQFTSLLSLLEKELVRQDIPYYLLKGSTPKLQRQQLVNSFNSDDTPVFLISLKAGGTGL 435

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL     +++ F  WW++             R  + G    V V  LIA++TI+E ++Q 
Sbjct: 436 NLTS-AEVVIHFDPWWNVSAQ-----NQATDRAYRIGQHNNVQVVKLIAKDTIEEKIMQL 489

Query: 184 LRTKSTIQDLLLN 196
              K  + D +++
Sbjct: 490 QSLKQDLSDSIIH 502


>gi|123123059|emb|CAM19307.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1062

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 592 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 643


>gi|308511103|ref|XP_003117734.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
 gi|308238380|gb|EFO82332.1| hypothetical protein CRE_00333 [Caenorhabditis remanei]
          Length = 3156

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTV-KCLQLANGAVYYDEEKHWKEVH--------- 52
             Y   Q+ L   L G+      S   T+    +L N    ++  +   +           
Sbjct: 1820 LYKHMQKGLL--LDGKTNTGSRSLMNTMVHLRKLCNHPFLFNNVEDSCKSFWNSKFITAT 1877

Query: 53   -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
                   K++ L+ I+ K  A    +++ +   + +  ++     G              
Sbjct: 1878 DLYRVSGKLELLDRILPKLRATGHRVLMFFQMTAMMTVVEDYLAGGTINYLRLDGSTKPD 1937

Query: 96   KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    + ++N              + G GLNLQ   + ++ F   W+  +          
Sbjct: 1938 ERGALLDKFNAPNSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQ 1991

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 1992 DRAHRIGQKAEVRVFRLITSNSVEEKILASARFKLNVDEKVIQAGK 2037


>gi|322710752|gb|EFZ02326.1| DNA repair protein Rhp26/Rad26, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 1162

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 39/226 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE-------EKHWK 49
           K Y  F       L  + + A       S        ++ N     D+            
Sbjct: 672 KAYETF-------LGSDEVSAILNRRRQSLYGIDILRKICNHPDLLDKSLGSKTGYNFGS 724

Query: 50  EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
                K++  + +++K    N    ++       L  ++K   +             +D+
Sbjct: 725 PKLSAKLELTKDLLQKVMIPNGHKTLLFSQGKLMLNIIEKCMRECNISYLRLDGETPVDQ 784

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N +  I +      + G G NL  G + ++ F   W+        +     R
Sbjct: 785 RQPMIDRFNTDLSIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPST-----DLQARER 838

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 839 AWRLGQNKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 884


>gi|29840673|ref|NP_829779.1| SNF2 family helicase [Chlamydophila caviae GPIC]
 gi|29835023|gb|AAP05657.1| helicase, Snf2 family [Chlamydophila caviae GPIC]
          Length = 1166

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 8    QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL      +G +    +  +   +  Q+      +  +   +     K   L  ++  
Sbjct: 952  KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFA-KDVPEPGDSAKYDLLMDLLSS 1010

Query: 66   A--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                    ++   +   L+ +         +  +  G T ++     Q   +  + +   
Sbjct: 1011 LVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTKNRLELVNQFNEDPGLLVFLI 1070

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  N
Sbjct: 1071 SLKAGGTGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLN 1124

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K ++   ++N+
Sbjct: 1125 TIEEKILSLQNRKKSLVKKVINS 1147


>gi|26326731|dbj|BAC27109.1| unnamed protein product [Mus musculus]
          Length = 1046

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  +   +  N    +      
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMHLRKCCNHPYLFDGAEPG 476

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 592 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 643


>gi|255076739|ref|XP_002502040.1| predicted protein [Micromonas sp. RCC299]
 gi|226517305|gb|ACO63298.1| predicted protein [Micromonas sp. RCC299]
          Length = 1481

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 25/207 (12%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKALEVII--EK 65
            D++        +        ++ N     +                 K+   E ++   +
Sbjct: 901  DVEEILEGRREALGGIDVLRKIVNHPDLLERTTQAHSEKYGEAERSGKLLVTEKVLGLWR 960

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQEWN-EGKIPLLFA 114
                  ++       L  L+ A  +     +              I E+N +  + +   
Sbjct: 961  EQGHRCLLFSQTQQMLDILEAAIARAGYTYRRMDGTTPVSHRMRLIDEFNGDDDVFVFLL 1020

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G G+NL  G + ++ +   W+        +     R  + G  + V VY LI   
Sbjct: 1021 TTKVGGLGVNLT-GADRVLLYDPDWNPST-----DAQARERAWRIGQTKEVTVYRLITAG 1074

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKE 201
            TI+E V  R   K  +   +L   K+ 
Sbjct: 1075 TIEEKVYHRQIYKEFLTSKVLKDPKQR 1101


>gi|116283949|gb|AAH16071.1| Smarca1 protein [Mus musculus]
          Length = 1032

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 477 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 536

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 537 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 592 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 643


>gi|257064055|ref|YP_003143727.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
 gi|256791708|gb|ACV22378.1| DNA/RNA helicase, superfamily II, SNF2 family [Slackia
           heliotrinireducens DSM 20476]
          Length = 907

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 78/213 (36%), Gaps = 21/213 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + YH  ++ L   L   ++E     ++  +  Q+        E+         K+ A+  
Sbjct: 691 RLYHAREQRLQSKLAERDMEDIQLLAEITRLRQVCCDPGLVYEDYD---GGSGKLDAIVN 747

Query: 62  IIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           ++E+A    +  ++   + S L                             +  +N+ + 
Sbjct: 748 LVEQAREVGSKTVIFSQWVSFLESISKRLNRNGIAHDWIIGDTPASDRVGIVDAFNKDET 807

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P+L     + G GLN+      ++    W +  +          +R  + G   +VFVY 
Sbjct: 808 PVLLVSMRAGGVGLNMTGASTAIIADPFWHEAAQT------QAYSRLWRLGQDSSVFVYQ 861

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +IA+NTI++ +L     K  + + +++A     
Sbjct: 862 IIAENTIEDRILGLQHKKHDLGESVISAGAASM 894


>gi|221055808|ref|XP_002259042.1| snf2 family n-terminal domain [Plasmodium knowlesi strain H]
 gi|193809113|emb|CAQ39815.1| snf2 family n-terminal domain, putative [Plasmodium knowlesi strain
           H]
          Length = 1382

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 75/216 (34%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    +           +  ++  +  N    +D  +    +          
Sbjct: 547 KLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 606

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   K   + +++       L  +                    D+    I 
Sbjct: 607 KMSLLDKLLPRLKKENSRVLLFSQMTRVLDIIDDYCRWKKYEYLRIDGSTVGDERQIRIN 666

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G
Sbjct: 667 QFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIG 720

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K+ V VY  + QNT++E +++R   K  +  L++ 
Sbjct: 721 QKKKVIVYRFVTQNTVEEKIVERAAKKLKLDSLIIQ 756


>gi|58267652|ref|XP_570982.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227216|gb|AAW43675.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1848

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 56/244 (22%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-------NSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
            + Y +F R    +  G  IE         +         +L N      + +  +     
Sbjct: 1543 QLYEEFSRSKAAEEAGMEIETSASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKEIQ 1602

Query: 52   -------------HDEKIKALEVIIEKAN-------------AAPIIVAYHF-------- 77
                         H  K++AL+ +++                   +++            
Sbjct: 1603 KKIGGGPELHDLSHAPKMEALKQLLQDCGIGLPVDKLADDVTTHRVLIFCQLRPMLDIIE 1662

Query: 78   -----NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                                   K    +Q +N + +I +L    +  G GLNL  G + 
Sbjct: 1663 KDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GADT 1721

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+      M +   + R  + G ++ V VY LI + T++E ++   R K  I 
Sbjct: 1722 VIFVDHDWNP-----MKDLQAMDRAHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLNIA 1776

Query: 192  DLLL 195
              ++
Sbjct: 1777 SSVV 1780


>gi|134112447|ref|XP_775199.1| hypothetical protein CNBE4720 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257851|gb|EAL20552.1| hypothetical protein CNBE4720 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1848

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 56/244 (22%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-------NSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
            + Y +F R    +  G  IE         +         +L N      + +  +     
Sbjct: 1543 QLYEEFSRSKAAEEAGMEIETSASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKEIQ 1602

Query: 52   -------------HDEKIKALEVIIEKAN-------------AAPIIVAYHF-------- 77
                         H  K++AL+ +++                   +++            
Sbjct: 1603 KKIGGGPELHDLSHAPKMEALKQLLQDCGIGLPVDKLADDVTTHRVLIFCQLRPMLDIIE 1662

Query: 78   -----NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                                   K    +Q +N + +I +L    +  G GLNL  G + 
Sbjct: 1663 KDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GADT 1721

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+      M +   + R  + G ++ V VY LI + T++E ++   R K  I 
Sbjct: 1722 VIFVDHDWNP-----MKDLQAMDRAHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLNIA 1776

Query: 192  DLLL 195
              ++
Sbjct: 1777 SSVV 1780


>gi|283458684|ref|YP_003363319.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
 gi|283134734|dbj|BAI65499.1| superfamily II DNA/RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1388

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 21/212 (9%)

Query: 2    KQYH---KFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R+     L+  +   F          +LA  A    + + +  V   K  
Sbjct: 1163 RIYDTHLQRERQKVLGLLEDMDKNRFTIFQSLTLLRRLALDAAL-IDPEAYAGVSSVKRD 1221

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEG 107
             L   +         ++V   F   L  +                +       I+ +  G
Sbjct: 1222 YLVQQLPDLLEKGHRVLVFSQFTGYLKSISARLAKEGIGHLYLDGSTRNRAEVIEAFTSG 1281

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GLNL    + +     WW+    QQ ++RI      + G  + V V
Sbjct: 1282 QEPVFLISLKAGGFGLNLTE-ADHVFIMDPWWNPAAEQQAVDRI-----HRIGQDKEVHV 1335

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A+ TI+E V+Q   +K+ + D ++   +
Sbjct: 1336 YRLVAEGTIEEKVMQLKESKAALFDAVVGEGE 1367


>gi|255072403|ref|XP_002499876.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515138|gb|ACO61134.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2637

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 28/190 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEVIIE--KANAAPIIVAYH 76
           S  ++  +  N    +      ++            K+  L+ I++  K     +++   
Sbjct: 794 SLLMQLRKCCNHPYLFAGTDVPEDGVPVEELVEASGKLAVLDRILKRLKDQGHRVVLFSQ 853

Query: 77  FNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLN 124
           F S L  L                     +    I  +N    P+        + G G+N
Sbjct: 854 FTSMLDILSDFLTLRGYQFARLDGSTNRVQRSIDIAAFNRPNSPMFAFLLSTRAGGLGVN 913

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   +  V +   W+ +     ++   + R  + G K+ V VY L+   T++E + QR 
Sbjct: 914 LQT-ADTCVLYDSDWNPQ-----VDTQAMARVHRIGQKKPVHVYRLVTAGTVEERMQQRA 967

Query: 185 RTKSTIQDLL 194
             K  ++ ++
Sbjct: 968 EKKLFLEQMV 977


>gi|260827184|ref|XP_002608545.1| hypothetical protein BRAFLDRAFT_128832 [Branchiostoma floridae]
 gi|229293896|gb|EEN64555.1| hypothetical protein BRAFLDRAFT_128832 [Branchiostoma floridae]
          Length = 1220

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 71/222 (31%), Gaps = 30/222 (13%)

Query: 2    KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----------KHWKE 50
            K    ++RE+        ++   N  +  ++  ++ N     +                 
Sbjct: 904  KVAEAYKREVVESSAPKSSLLNLNLKNIMMQLRKICNHPYLVEYPLDPATQDYLVDERLV 963

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
                K+  L+ ++         ++V       +                           
Sbjct: 964  ESSGKLLLLDKMLPMLHKQGHKVLVFSQMTKMMDVLEDYCLYRGHKYCRLDGTMAYPDRQ 1023

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  +N +    +      + G G+NL    + ++ +   W+ +      +     R  
Sbjct: 1024 EQIDTFNKDPDYFVFLLSTRAGGLGINLTA-ADTVIIYDSDWNPQ-----CDLQAQDRCH 1077

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V VY LI  NTID+ +++R   K  ++ ++++  K
Sbjct: 1078 RIGQTRPVVVYRLITANTIDQKIVERAAGKRKLEKMVMHKGK 1119


>gi|189190262|ref|XP_001931470.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973076|gb|EDU40575.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1273

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +        +             S   ++  +L N    ++E +            
Sbjct: 693 KLYKQLVTHNRLMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEDVMNPTKGTNDL 752

Query: 55  ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K       +++ +     +  ++        +            
Sbjct: 753 LWRAAGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMMYLRLDGATKADD 812

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 813 RSDLLRLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 866

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 867 RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 911


>gi|156082073|ref|XP_001608529.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148801100|gb|EDL42505.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 3241

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 27/222 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH------D 53
            ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 1634 IEFYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCCEPVDKDEYKERLVYSS 1693

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DPCTI 101
             KI  LE ++   K     +++       L    +    +G    +             +
Sbjct: 1694 GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMSKEMRKKAM 1753

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1754 NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 1807

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 1808 GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 1849


>gi|78222214|ref|YP_383961.1| SNF2-related:helicase-like:Zinc finger, SWIM-type [Geobacter
            metallireducens GS-15]
 gi|78193469|gb|ABB31236.1| SNF2-related:Helicase-like:Zinc finger, SWIM-type [Geobacter
            metallireducens GS-15]
          Length = 1142

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            + +  ++  QL                   K++ L   +E+       ++V   F S L 
Sbjct: 947  ALTAILRLRQLCLSPRLLI---ADSREPSPKVEFLVEQLEELFTEGHSVLVFSQFTSFLD 1003

Query: 83   R----------LQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
                                 + +    +  + +G  P +      + G GLNL      
Sbjct: 1004 IVEGELSRRGVHYYRLDGSTPVPERKRLVTAFQKGDEPSVFLLSLKAGGKGLNLTR-ATY 1062

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+       +E     R  + G  R V +  L+ ++TI+E +++  + K  + 
Sbjct: 1063 VFHLDPWWNPA-----VENQASDRAHRIGQTRQVTITRLVMRHTIEEKMMELKKRKLKLY 1117

Query: 192  DLLLNA 197
              LL  
Sbjct: 1118 HALLEE 1123


>gi|255327378|ref|ZP_05368452.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255295658|gb|EET75001.1| helicase/SNF2 family domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 1384

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 21/212 (9%)

Query: 2    KQYH---KFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    + +R+     L+  +   F          +LA  A    +   +  V   K  
Sbjct: 1159 RIYDTHLQRERQKVLGLLEDMDKNRFTIFQSLTLLRRLALDAAL-IDPDAYAGVSSVKRD 1217

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +         ++V   F   L  +                +       I+ +  G
Sbjct: 1218 YLVQQLPDLLEKGHRVLVFSQFTGYLKSISVRLAEEGIGHLYLDGSTRNRAEVIEAFTSG 1277

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + P+      + G GLNL    + +     WW+    QQ ++RI      + G  + V V
Sbjct: 1278 QEPVFLISLKAGGFGLNLTE-ADHVFIMDPWWNPAAEQQAVDRI-----HRIGQDKEVHV 1331

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y L+A+ TI+E V+Q   +K+ + D ++   +
Sbjct: 1332 YRLVAEGTIEEKVMQLKESKAALFDAVVGEGE 1363


>gi|322707206|gb|EFY98785.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Metarhizium anisopliae ARSEF 23]
          Length = 1416

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +          D +G    A   ++  ++  +L N    +DE ++           
Sbjct: 783  KLYKQMVTHNKLVVSDGKGGKTNARGLSNMIMQLRKLCNHPFVFDEVENVMNPMSISNDL 842

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +   + +  ++                   D+
Sbjct: 843  LWRTAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRKFEYLRLDGTTKSDE 902

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 903  RSDLLKEFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1001


>gi|295319060|gb|ADF99437.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. 230613]
          Length = 1050

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 27/206 (13%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKST 189
             V V  LIA+ TI+E + +    K  
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKITTKKER 1047


>gi|328915095|gb|AEB55928.1| helicase, Snf2 family [Chlamydophila psittaci 6BC]
          Length = 1130

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 8    QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL      +G +    +  +   +  Q+      +  +   +     K   L  ++  
Sbjct: 916  KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFA-KDVPEPGDSAKYDLLMDLLSS 974

Query: 66   A--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                    ++   +   L+ +         +  +  G T ++     Q   +  + +   
Sbjct: 975  LVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLI 1034

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  N
Sbjct: 1035 SLKAGGTGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLN 1088

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K ++   ++N+
Sbjct: 1089 TIEEKILTLQNRKKSLVKKVINS 1111


>gi|68467034|ref|XP_722432.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
 gi|46444408|gb|EAL03683.1| hypothetical protein CaO19.9102 [Candida albicans SC5314]
          Length = 1690

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            K Y +  R               +   N+ ++ ++  ++ N    Y+E ++    +    
Sbjct: 1035 KLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYEEVENLINPNIETN 1094

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                    K + L+ ++ K       +++ +     +                   G   
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKA 1154

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1155 DDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGK 1255


>gi|258514714|ref|YP_003190936.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257778419|gb|ACV62313.1| SNF2-related protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 891

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 2   KQYHKF---QRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEK 55
           + Y       +     +    E  +A       +   Q+           +W       K
Sbjct: 668 ELYESILISVKNEIARMPNRFEIKDASTVLEGLLYLRQVCCHPALLKRTLNWNHCDESGK 727

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWN 105
               ++ I++  AN   ++V   F S L+ ++K         F       K    +  + 
Sbjct: 728 FDLFKLKIDELQANHEKVVVFSQFTSMLSIMKKWAEEQGYATFYLDGATMKRQEVVDSFE 787

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                + F    + G GLN+       + +  WW+       +E     R  + G K+ V
Sbjct: 788 RSDEGVFFISLKAGGVGLNIVS-CQYAIIYDPWWNPA-----VENQASDRIYRIGQKKNV 841

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           FVY+L+  N+I+E + +    K  I D LL
Sbjct: 842 FVYHLVTANSIEEKIEKLKTEKREIADNLL 871


>gi|309777116|ref|ZP_07672080.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915125|gb|EFP60901.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1077

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKA 66
            ++L   +Q E ++ F   +   +  ++   A    E      +   K+K    ++   + 
Sbjct: 859  QDLQKKMQMEEVDKFQVLAMMTRLREICCDARLLYEN---VTLPSTKLKGCMDLLLSARN 915

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHP 116
            +   +++   F S L  +++                        ++++  G+  +     
Sbjct: 916  SGRRVLLFSSFTSMLGLIEEQLRTENIRYLKLTGETKKELRHAYVEQFQNGEADVFLISL 975

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL     I++ +  WW+L             R  + G  + V VY LI +++I
Sbjct: 976  KAGGTGLNLTN-AEIVIHYDPWWNLSAQ-----NQATDRAYRIGQTKDVQVYKLIMKDSI 1029

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E +++    K  + D  +N+
Sbjct: 1030 EEKIMKLQERKHILSDTFINS 1050


>gi|74008383|ref|XP_865586.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 19 [Canis familiaris]
          Length = 1055

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   K
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGK 639


>gi|302824854|ref|XP_002994066.1| hypothetical protein SELMODRAFT_236903 [Selaginella moellendorffii]
 gi|300138072|gb|EFJ04853.1| hypothetical protein SELMODRAFT_236903 [Selaginella moellendorffii]
          Length = 1046

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 25/199 (12%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIKALEVII--EKANAAPIIVAY 75
           N+        ++ N     + E   K           K+  +  ++   K     ++V  
Sbjct: 599 NALYGIDILRKICNHPDLLEREASEKHADYGLPDRSGKLMVVSQVLNSWKDQGHRVLVFC 658

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLN 124
                      F        +      ++ + P  I E+NE   + +        G G N
Sbjct: 659 QTQQMLDIVEIFVESQGYTYRRMDGSTSVKQRPALIDEFNESSHVFVFLLTTKVGGLGTN 718

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L  G N ++ F   W+              R  + G  + V VY LI + TI+E V  R 
Sbjct: 719 LT-GANRVIIFDPDWNPSTDM-----QARERAWRIGQTKDVIVYRLITRGTIEEKVYHRQ 772

Query: 185 RTKSTIQDLLLNALKKETI 203
             K  + + +L   ++  +
Sbjct: 773 IYKQFLTNKILRDPQQRRV 791


>gi|293351213|ref|XP_002727727.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1065

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 420 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 479

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 480 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 539

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 540 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 594

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 595 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 646


>gi|62185488|ref|YP_220273.1| putative helicase [Chlamydophila abortus S26/3]
 gi|62148555|emb|CAH64326.1| putative helicase [Chlamydophila abortus S26/3]
          Length = 1165

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 8    QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL      +G +    +  +   +  Q+      +  +   +     K   L  ++  
Sbjct: 951  KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFA-KDVPEPGDSAKYDLLMDLLSS 1009

Query: 66   A--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                    ++   +   L+ +         +  +  G T ++     Q   +  + +   
Sbjct: 1010 LVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLI 1069

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  N
Sbjct: 1070 SLKAGGTGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLN 1123

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K ++   ++N+
Sbjct: 1124 TIEEKILTLQNRKKSLVKKVINS 1146


>gi|150017499|ref|YP_001309753.1| non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149903964|gb|ABR34797.1| Non-specific serine/threonine protein kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1085

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 21/189 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                  +   K  Q+        +          KI AL  ++E+       I+V   F 
Sbjct: 883  SKIEILAYITKLRQICLDPSVTMDNY---LGSSGKIDALIELLEQSIDEGHKILVFSQFT 939

Query: 79   SDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S L  + K                +       + E+N G+  +      + G GLNL   
Sbjct: 940  SVLKNISKILKEKNFLFSYLDGSVSSINRMKMVDEFNNGENTVFLVSLKAGGTGLNLTS- 998

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +I++ F  WW+       +E     R  + G K  V V  LIAQ TI+E +++   +K 
Sbjct: 999  ADIVIHFDPWWNPA-----VEDQATDRAHRIGQKNVVEVIKLIAQGTIEEKIVELQDSKR 1053

Query: 189  TIQDLLLNA 197
             + + +L  
Sbjct: 1054 ELINKILGD 1062


>gi|302814766|ref|XP_002989066.1| hypothetical protein SELMODRAFT_450679 [Selaginella moellendorffii]
 gi|300143167|gb|EFJ09860.1| hypothetical protein SELMODRAFT_450679 [Selaginella moellendorffii]
          Length = 1043

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 25/199 (12%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIKALEVII--EKANAAPIIVAY 75
           N+        ++ N     + E   K           K+  +  ++   K     ++V  
Sbjct: 596 NALYGIDILRKICNHPDLLEREASEKHADYGLPDRSGKLMVVSQVLNSWKDQGHRVLVFC 655

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLN 124
                      F        +      ++ + P  I E+NE   + +        G G N
Sbjct: 656 QTQQMLDIVEIFVESQGYTYRRMDGSTSVKQRPALIDEFNESSHVFVFLLTTKVGGLGTN 715

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L  G N ++ F   W+              R  + G  + V VY LI + TI+E V  R 
Sbjct: 716 LT-GANRVIIFDPDWNPSTDM-----QARERAWRIGQTKDVIVYRLITRGTIEEKVYHRQ 769

Query: 185 RTKSTIQDLLLNALKKETI 203
             K  + + +L   ++  +
Sbjct: 770 IYKQFLTNKILRDPQQRRV 788


>gi|157822125|ref|NP_001100766.1| DNA excision repair protein ERCC-6 [Rattus norvegicus]
 gi|149034143|gb|EDL88913.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 (predicted) [Rattus norvegicus]
          Length = 1325

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 77/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y  F   + +Y  L GEN       S  V   ++ N    +               +E
Sbjct: 678 KVYQNFIDSKAVYRILNGEN----QIFSGLVALRKICNHPDLFSGGPKNTSALPEDGLEE 733

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           E+        K+  +E ++         +++       L  L+                 
Sbjct: 734 EQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTT 793

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I ++N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 794 TIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 847

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 848 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 897


>gi|148692894|gb|EDL24841.1| mCG6355 [Mus musculus]
          Length = 1330

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------DEEKH 47
           K Y  F   + +Y  L GEN       S  V   ++ N    +            DE + 
Sbjct: 679 KVYQNFIDSKAVYRILNGEN----QIFSGLVALRKICNHPDLFSGGPKNASGPPEDELEE 734

Query: 48  WKEVH---DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
            +  H     K+  +E ++         +++       L  L+                 
Sbjct: 735 EQFGHWRRSGKMIVVESLLKIWHRQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTT 794

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           T+      I ++N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 795 TIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DTQ 848

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 849 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 898


>gi|223992919|ref|XP_002286143.1| rad54-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220977458|gb|EED95784.1| rad54-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 549

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 66/237 (27%), Gaps = 43/237 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------- 52
            Y  + R    ++ G    +           ++ N                         
Sbjct: 290 LYEDYLRS--DEVMGVMRGSVQLLKAVTVLRKICNHPDLVVGPDGRTLDSVQEESSSDND 347

Query: 53  --------------DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                           K++ L  I+          I+   +   L  +++   +      
Sbjct: 348 DDGCFYGDERFVEVSGKLQVLAKILPLWHKQGHRFILFCQWRKTLNIIEQFTRKQNWKFA 407

Query: 91  ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +      + ++N  +           G       G N +V F   W+ +    
Sbjct: 408 RLDGNTNVASRQKLVDKFNNDESYFCMLMTTRTGGVGLNVTGANRVVIFDPDWNPQT--- 464

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +     R  + G K+ V VY LI   TI+E + QR   K+ I + +L   K+  +
Sbjct: 465 --DAQARERAWRFGQKKDVTVYRLITAGTIEEKIYQRQIFKTAITNQVLQDPKQRRL 519


>gi|321259505|ref|XP_003194473.1| helicase [Cryptococcus gattii WM276]
 gi|317460944|gb|ADV22686.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 1848

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 76/244 (31%), Gaps = 56/244 (22%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-------NSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
            + Y +F R    +  G  IE         +         +L N      + +  +     
Sbjct: 1543 QLYDEFSRSKAAEEAGMEIEKPASKEGQGHVFQSLQYLRKLCNHPALVLDGEPQRFKEIQ 1602

Query: 52   -------------HDEKIKALEVIIEKAN-------------AAPIIVAYHF-------- 77
                         H  K++AL  +++                   +++            
Sbjct: 1603 KKIGGGPGLHDLSHAPKMEALRQLLQDCGIGLPPDKLADDVTTHRVLIFCQLRPMLDIIE 1662

Query: 78   -----NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                                   K    +Q +N + +I +L    +  G GLNL  G + 
Sbjct: 1663 KDLFGTHMPTVSYMRLDGSTDPRKRHAIVQTFNADPRIDVLLLTTSVGGLGLNLT-GADT 1721

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+      M +   + R  + G ++ V VY LI + T++E ++   R K  I 
Sbjct: 1722 VIFVDHDWNP-----MKDLQAMDRAHRLGQRKVVNVYRLITRGTLEEKIMGLQRFKLNIA 1776

Query: 192  DLLL 195
              ++
Sbjct: 1777 SSVV 1780


>gi|329943255|ref|ZP_08292029.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
            Cal10]
 gi|313848406|emb|CBY17410.1| putative helicase [Chlamydophila psittaci RD1]
 gi|325506467|gb|ADZ18105.1| SNF2 family helicase [Chlamydophila psittaci 6BC]
 gi|328814802|gb|EGF84792.1| type III restriction enzyme, res subunit [Chlamydophila psittaci
            Cal10]
          Length = 1165

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 8    QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL      +G +    +  +   +  Q+      +  +   +     K   L  ++  
Sbjct: 951  KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFA-KDVPEPGDSAKYDLLMDLLSS 1009

Query: 66   A--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                    ++   +   L+ +         +  +  G T ++     Q   +  + +   
Sbjct: 1010 LVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTKNRLEIVNQFNEDPGLLVFLI 1069

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  N
Sbjct: 1070 SLKAGGTGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLN 1123

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K ++   ++N+
Sbjct: 1124 TIEEKILTLQNRKKSLVKKVINS 1146


>gi|283781798|ref|YP_003372553.1| Non-specific serine/threonine protein kinase [Pirellula staleyi DSM
           6068]
 gi|283440251|gb|ADB18693.1| Non-specific serine/threonine protein kinase [Pirellula staleyi DSM
           6068]
          Length = 594

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 4   YHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E   DL   G+ I   +     ++  Q+ N                 K++ LE 
Sbjct: 371 YQMAEKEGVMDLNNMGDQITIQHVFELVLRLKQICN--------FDPVTGCSAKLERLEA 422

Query: 62  IIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            +E+   +    IV   +   L +               Q  +  +DP   Q   + K  
Sbjct: 423 DLEEVAASGKKAIVFSQWVRCLDQITEKLQRFNPLSYHGQIPSKKRDPILKQFKEDKKHS 482

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNLQ+    +  F  WW+       IE   + R  + G    V V  +
Sbjct: 483 VLLMSYGAGSVGLNLQF-CEYVFLFDRWWNPA-----IEDQAINRAHRIGAAGPVTVTRM 536

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A  TI+E + Q L  K  I + +L+
Sbjct: 537 LAMGTIEERINQVLEHKREIFNTILS 562


>gi|58260538|ref|XP_567679.1| hypothetical protein CNK02030 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57229760|gb|AAW46162.1| hypothetical protein CNK02030 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1558

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y   Q+           +  +  N  +  ++  ++ N    + E      V +     
Sbjct: 947  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 1006

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
                  K + L+ I+ K       +++ +     +                       + 
Sbjct: 1007 IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDFRGWKYCRLDGSTKAED 1066

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N+   P  +      + G GLNLQ   + ++ +   W+        +     
Sbjct: 1067 RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQS-ADTVIIYDTDWNP-----HADLQAQD 1120

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K
Sbjct: 1121 RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGK 1165


>gi|322694140|gb|EFY85978.1| DNA repair protein Rhp26/Rad26, putative [Metarhizium acridum CQMa
           102]
          Length = 1162

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 39/226 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE-------EKHWK 49
           K Y  F       L  + + A       S        ++ N     D+            
Sbjct: 672 KAYETF-------LGSDEVSAILNRRRQSLYGIDILRKICNHPDLLDKSLGSKIGYNFGS 724

Query: 50  EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
                K++  + +++K         ++       L  ++K   +             +D+
Sbjct: 725 PKLSAKLELTKDLLQKVMIPKGHKTLLFSQGKLMLNIIEKCMRECNISYLRLDGETPVDQ 784

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  +N    I +      + G G NL  G + ++ F   W+        +     R
Sbjct: 785 RQPMIDRFNADLSIHVFLMTTRTGGLGTNLT-GADRIIIFDPDWNPST-----DLQARER 838

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V +Y L+ + TI+E +  R   K  + + +L   K+ 
Sbjct: 839 AWRLGQNKPVKIYRLMTEGTIEEKIYHRQIFKQFMTNKVLKDPKQR 884


>gi|282890240|ref|ZP_06298770.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499897|gb|EFB42186.1| hypothetical protein pah_c014o119 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 883

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 18/200 (9%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +L G +          ++  Q+    +     +    V   K+  L   +E         
Sbjct: 679 ELDGISKHRMEVLEAILRLRQICCHPLLVT-AQEGSFVASAKLDVLMQDLETLAEEGKKA 737

Query: 72  IVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +V   F S L               +  G T +++    Q   +  IP       + G G
Sbjct: 738 LVYSQFTSMLGLIAKEFQKRGWNFVYLDGSTHNREKVVTQFQEDASIPFFLISLKAGGVG 797

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + +  F  WW+     + IE   + R  + G +  V    LIA  +I+E + +
Sbjct: 798 LNLTS-ADYVYLFDPWWN-----EAIENQAIDRAHRIGRQDTVIAKRLIAIESIEEKIQK 851

Query: 183 RLRTKSTIQDLLLNALKKET 202
               K  + + L +    +T
Sbjct: 852 LKENKRQLIESLFDETYGQT 871


>gi|240952196|ref|XP_002399349.1| helicase, putative [Ixodes scapularis]
 gi|215490555|gb|EEC00198.1| helicase, putative [Ixodes scapularis]
          Length = 624

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 68/196 (34%), Gaps = 25/196 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH------DEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
            +   ++ N    +                  K++ L+ ++ +       +++       
Sbjct: 363 LMDLRKICNHPYLFRWVDPTGPADEELVAASGKLRLLDCMLPELRRRKHKVLLFSQMTRV 422

Query: 81  LARLQKAFP----QGRTLDKDPCTIQEW-------NEGKIPLLFAHPASCGHGLNLQYGG 129
           L  L+        +   LD                N+    +      + G G+NL  GG
Sbjct: 423 LDILEDYCHLRHFRHCRLDGRTKVEDRQLQMHLFNNDPSYFVFLLSTRAGGLGINLT-GG 481

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + +V F   W+ +      +   + R  + G  R V VY L+ + T+++ +++R   K  
Sbjct: 482 DTVVLFDSDWNPQ-----CDLQAMDRCHRIGQTRPVVVYRLVTRGTVEQRMVERASAKRK 536

Query: 190 IQDLLLNALKKETIHV 205
           ++ +++    +    V
Sbjct: 537 LEKIIMQKGARRFSRV 552


>gi|311745326|ref|ZP_07719111.1| Snf2 family protein [Algoriphagus sp. PR1]
 gi|126577862|gb|EAZ82082.1| Snf2 family protein [Algoriphagus sp. PR1]
          Length = 974

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 3   QYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y + +      +       G N + F       +  Q+AN      ++    E    K+
Sbjct: 754 VYEEVKNYYREKIISDIKATGRNTQQFTLLRGLTQLRQIANHPKMVRDDY---EGESGKL 810

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWN 105
           + +  +++        ++V   F   L+ +++          +  G T D+         
Sbjct: 811 EDITYMLQSTISENHKVLVFSQFVRHLSIVKEYLDKEGIPYSYLDGSTKDRQAQVEAFQE 870

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              I +      + G GLNL      +     WW+       +E   + R  + G +  V
Sbjct: 871 NDDIKVFLISLKAGGVGLNLTK-AEYVFLLDPWWNPA-----VEAQAIDRAHRIGQENKV 924

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Y  I++N+++E ++     K  +   L+ 
Sbjct: 925 IIYKFISRNSVEEKIMALQNRKLALAGELIG 955


>gi|67606806|ref|XP_666775.1| chromatin remodelling complex protein SNF2L [Cryptosporidium
           hominis TU502]
 gi|54657830|gb|EAL36543.1| chromatin remodelling complex protein SNF2L [Cryptosporidium
           hominis]
          Length = 1292

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y +        L   +       +  ++  +  N    +D         E        
Sbjct: 455 KIYSELLTRNLDVLNSASSNKTQMLNLLMQLRKTCNHPYLFDGVEPGPPYVEGFHMVEAS 514

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            K+  L  ++ K  +  + +++       L  +                     +    I
Sbjct: 515 GKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWSGYPYCRIDGSTPGIERQERI 574

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N+      +      + G G+NL    ++++ F   ++ +     ++   + R  + 
Sbjct: 575 DIFNKEGSEKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQ-----MDLQAMDRAHRI 628

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+ V VY  + + T++E +++R   K  +  L++ 
Sbjct: 629 GQKKPVTVYRFVTEKTVEERIVERAAKKLKLDSLIIQ 665


>gi|14028667|gb|AAK52453.1|AF325920_1 DNA-dependent ATPase SNF2L [Mus musculus]
          Length = 1064

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 418 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 477

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 478 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 537

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 538 DGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 592

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 593 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 644


>gi|60679768|ref|YP_209912.1| SNF family helicase [Bacteroides fragilis NCTC 9343]
 gi|60491202|emb|CAH05950.1| putative SNF family helicase [Bacteroides fragilis NCTC 9343]
          Length = 1016

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 16/203 (7%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +  L      +  ++F   +  ++  QL+     +  +         +I      + ++
Sbjct: 806  LRNILLEQTAEKGQQSFTVLNGILRLRQLSCHPQLFLPDFIGDSGKLYQIIETFETL-RS 864

Query: 67   NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +++   F   L              AF  G + ++     +   + KI        
Sbjct: 865  EGHKVLIFSSFVKHLELVAGEFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLK 924

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + +     WW+        E   + R  + G    V  Y  I Q +I+
Sbjct: 925  AGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQNNQVIAYRFITQGSIE 978

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E ++Q    K  + +  +   ++
Sbjct: 979  EKIIQLQEEKRKLAETFITDTEQ 1001


>gi|149174125|ref|ZP_01852753.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
 gi|148847105|gb|EDL61440.1| swi/snf family helicase_2 [Planctomyces maris DSM 8797]
          Length = 642

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +++    L   G++I   +     ++  Q+ N      +         ++++A  
Sbjct: 407 AYETAEKDGVIQLNEMGDSITVQHVFELVLRLKQITN-----FDPVTGDSCKLDRLEADM 461

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWN-EGKIPL 111
             I  A+    I+   +   L  + K         +  G    +    + ++  +    L
Sbjct: 462 EEI-AASGGKAILFSQWTKPLDFMAKRLERFGTLVYHGGIPTKQREPILDQFKHDPDSHL 520

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLNLQ+    +  F  WW+       IE   + R  + G K  V V   +
Sbjct: 521 LLMSYGTGAVGLNLQF-AGYVFLFDRWWNPA-----IEDQAINRAHRIGQKTQVIVTKFV 574

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
             NTI+E +   L  K  +   +L  
Sbjct: 575 CNNTIEERIDMVLEQKRELFRSILGD 600


>gi|300743764|ref|ZP_07072784.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
 gi|300380125|gb|EFJ76688.1| SNF2/helicase domain protein [Rothia dentocariosa M567]
          Length = 1318

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 79/209 (37%), Gaps = 21/209 (10%)

Query: 3    QYH---KFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y    + +R+     L+  +   F          +LA  A    +   +  V   K++ 
Sbjct: 1095 IYDMHLQRERQKVLGLLEDMDKNRFTIFQSLTLLRRLALDATL-IDPDEYAGVASAKLEY 1153

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGK 108
            L   +     +   ++V   F   L  +                T    P  ++++ EG 
Sbjct: 1154 LVEHLPSLLGDGHRVLVFSQFTGYLRTIAERLQAEGIDYLYLDGTTRNRPQVLKDFAEGT 1213

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P+      + G GLNL    +       WW+    QQ ++RI      + G +R V VY
Sbjct: 1214 APVFLISLKAGGFGLNLTE-ADHCFIMDPWWNPAAEQQAVDRI-----HRLGQERDVHVY 1267

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+A+ TI+E V+    +K+ + D ++N 
Sbjct: 1268 RLVAEGTIEEKVMDLKASKAALFDAVVND 1296


>gi|15896682|ref|NP_350031.1| DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
 gi|15026531|gb|AAK81371.1|AE007841_6 DNA/RNA helicase, SNF2 [Clostridium acetobutylicum ATCC 824]
          Length = 949

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 21/204 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y ++ + +   ++          S   +  Q+        E+ +       K+K    I
Sbjct: 731 VYAEYIKSVKAMMKNHKDGRVQIFSYLTRLRQICLDPSLILEDYN---GGSGKLKTALEI 787

Query: 63  IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPL 111
           I       +++   F S L                             + ++N    I +
Sbjct: 788 IRGHEG-KVLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKV 846

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    N+++ F  WW+       +E     R  + G K  V V  L+
Sbjct: 847 FLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VENQATDRAHRIGQKNVVEVIKLV 900

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
           A+ TI+E ++     K  + D ++
Sbjct: 901 AKGTIEEKIILLQEDKKELIDNVI 924


>gi|325510846|gb|ADZ22482.1| NA/RNA helicase, SNF2 [Clostridium acetobutylicum EA 2018]
          Length = 966

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 21/204 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y ++ + +   ++          S   +  Q+        E+ +       K+K    I
Sbjct: 748 VYAEYIKSVKAMMKNHKDGRVQIFSYLTRLRQICLDPSLILEDYN---GGSGKLKTALEI 804

Query: 63  IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPL 111
           I       +++   F S L                             + ++N    I +
Sbjct: 805 IRGHEG-KVLLFSQFTSALYKIEECLRKEKIKFFHLDGSTKPQDRINMVNDFNSNNAIKV 863

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    N+++ F  WW+       +E     R  + G K  V V  L+
Sbjct: 864 FLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VENQATDRAHRIGQKNVVEVIKLV 917

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
           A+ TI+E ++     K  + D ++
Sbjct: 918 AKGTIEEKIILLQEDKKELIDNVI 941


>gi|313898129|ref|ZP_07831668.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312957157|gb|EFR38786.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 527

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 21/199 (10%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKA 66
           ++L   +Q E ++ F   +   +  ++   A    E      +   K++    ++   + 
Sbjct: 302 QDLQKRMQMEEVDKFQVLAMMTRLREICCDARLLYEN---VTLPSTKLRGCMDLLLNARN 358

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKIPLLFAHP 116
           +   +++   F S L  +++                        ++++  G+  +     
Sbjct: 359 SGRRVLLFSSFTSMLELIEEQLRVENIRYLKLTGETKKELRHAYVEKFQNGEADVFLISL 418

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL     I++ +  WW+L             R  + G  + V VY LI ++TI
Sbjct: 419 KAGGTGLNLTN-AEIVIHYDPWWNLSAQ-----NQATDRAYRIGQTKDVQVYKLIMKDTI 472

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +++    K  + D  +
Sbjct: 473 EEKIMKLQERKHILSDTFI 491


>gi|34559250|gb|AAQ75381.1| global transcription activator Snf2p [Pichia angusta]
          Length = 1461

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH----- 52
            K YH+  +     +   + +A         K ++  ++ N    +   +           
Sbjct: 855  KLYHQMLKYNQLFIGDSDSKAPVGIKGMNNKLMQLRKICNHPYVFPAIEDMINPSHENND 914

Query: 53   -----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLD 95
                   K + L+ I+ K   +   +++ +     +                       D
Sbjct: 915  TIWRVSGKFELLDRILPKFRASGHRVLMFFQMTQIMDIMEDFLRFRGMHYMRLDGDTRAD 974

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++++N    P  +      + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 975  DRTALLKDFNSEDSPYFVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 1028

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++I+E +L+R   K  I   ++ A K
Sbjct: 1029 DRAHRIGQKNEVRILRLITSDSIEEYILERAHQKLDIDGKVIQAGK 1074


>gi|297621841|ref|YP_003709978.1| putative SNF2-family protein [Waddlia chondrophila WSU 86-1044]
 gi|297377142|gb|ADI38972.1| putative SNF2-family protein [Waddlia chondrophila WSU 86-1044]
          Length = 1204

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 77/206 (37%), Gaps = 20/206 (9%)

Query: 5    HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEV 61
             K +  L  +L  +   I   +  S      Q+ N    Y +     + +   K +  + 
Sbjct: 979  DKMRGNLIRELNDQTSPIPYLHVFSLLSSLKQICNHPAAYLKNPVDYDKYQSGKWELFKE 1038

Query: 62   IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWN-EGKIP 110
            +I +   +   ++V   + + L  +Q+   + R                ++ +N + +  
Sbjct: 1039 LISEALESDQKVVVFSQYLAMLDIMQQYLDEQRIGYATIRGATLDRGEVVRRFNADSRCK 1098

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G++L    ++++ +  WW+        E     R  + G +R V V+ L
Sbjct: 1099 VFLGSLQAAGLGIDLTA-ASVVIHYDRWWNAAR-----EDQATDRVHRIGQQRGVQVFKL 1152

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   T +E + + +  K  + + ++ 
Sbjct: 1153 VTLGTFEERIDEMITRKGRLMEEVIG 1178


>gi|196014269|ref|XP_002116994.1| hypothetical protein TRIADDRAFT_60972 [Trichoplax adhaerens]
 gi|190580485|gb|EDV20568.1| hypothetical protein TRIADDRAFT_60972 [Trichoplax adhaerens]
          Length = 1002

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 82/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    + QRE Y  +  ++I+  N           +  ++  +  N    +      
Sbjct: 354 VKVYVGLSRMQREWYTKILMKDIDIVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 413

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  LE ++   +A  + ++V       L  L+             
Sbjct: 414 PPYTTDTHLATNCGKMVVLEKLLPRLQAQGSRVLVFSQMTRMLDILEDYCMWKGYKYCRL 473

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +    +IQ +N              + G G+NL    ++++ +   W+ +    
Sbjct: 474 DGSTPHEDRQASIQAFNMPDSDKFLFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 528

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++     R  + G  + V V+  I  NTI+E +++R  TK  +  +++   +
Sbjct: 529 -VDLQAQDRAHRIGQTKEVKVFRFITDNTIEERIVERAETKLRLDRIVIQQGR 580


>gi|326923687|ref|XP_003208066.1| PREDICTED: DNA excision repair protein ERCC-6-like, partial
           [Meleagris gallopavo]
          Length = 1498

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           + Y  F   +E+Y  L G+        S  V   ++ N    +       +         
Sbjct: 771 RVYQNFIDSKEVYQILNGD----MQVFSGLVALRKICNHPDLFSGGPKILKCLPDADLEE 826

Query: 51  -------VHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQG 91
                      K+  +E ++         ++              F  D           
Sbjct: 827 ADQFGYWKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFVRDRNYSYLRMDGT 886

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I  +N +  I +        G G+NL  G + ++ +   W+        + 
Sbjct: 887 TTIASRQPLITRYNEDKSIFIFLLTTRVGGIGVNLT-GADRVIIYDPDWNPST-----DT 940

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 941 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 991


>gi|311113008|ref|YP_003984230.1| hypothetical protein HMPREF0733_11339 [Rothia dentocariosa ATCC
            17931]
 gi|310944502|gb|ADP40796.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 1319

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 3    QYH---KFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y    + +R+     L   +   F          +LA  A    +   +  V   K++ 
Sbjct: 1096 IYDMHLQRERQKVLGLLDDMDKNRFTIFQSLTLLRRLALDATL-IDPDEYAGVASAKLEY 1154

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGK 108
            L   +     +   ++V   F   L  +                T    P  ++++ EG 
Sbjct: 1155 LVEHLPSLLGDGHRVLVFSQFTGYLRTIAERLQAEGIDYLYLDGTTRNRPQVLKDFAEGA 1214

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P+      + G GLNL    +       WW+    QQ ++RI      + G +R V VY
Sbjct: 1215 APVFLISLKAGGFGLNLTE-ADHCFIMDPWWNPAAEQQAVDRI-----HRLGQERDVHVY 1268

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+A+ TI+E V+    +K+ + D ++N 
Sbjct: 1269 RLVAEGTIEEKVMDLKASKAALFDAVVND 1297


>gi|320581785|gb|EFW96004.1| global transcription activator Snf2p [Pichia angusta DL-1]
          Length = 1461

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH----- 52
            K YH+  +     +   + +A         K ++  ++ N    +   +           
Sbjct: 855  KLYHQMLKYNQLFIGDSDSKAPVGIKGMNNKLMQLRKICNHPYVFPAIEDMINPSHENND 914

Query: 53   -----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLD 95
                   K + L+ I+ K   +   +++ +     +                       D
Sbjct: 915  TIWRVSGKFELLDRILPKFRASGHRVLMFFQMTQIMDIMEDFLRFRGMHYMRLDGDTRAD 974

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++++N    P  +      + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 975  DRTALLKDFNSEDSPYFVFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 1028

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++I+E +L+R   K  I   ++ A K
Sbjct: 1029 DRAHRIGQKNEVRILRLITSDSIEEYILERAHQKLDIDGKVIQAGK 1074


>gi|294501844|ref|YP_003565544.1| SNF2 family helicase [Bacillus megaterium QM B1551]
 gi|294351781|gb|ADE72110.1| SNF2 family helicase [Bacillus megaterium QM B1551]
          Length = 876

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  + +  + + +              K   L N    Y +E   K+      K + 
Sbjct: 650 LYQELVQGMLQETEEKTGFERKGMILQTLNKLKLLCNHPALYLKESAAKQTVRRSHKSEK 709

Query: 59  LEVII--EKANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWN 105
           +  ++   +      ++   +             ++           + ++    + ++ 
Sbjct: 710 IIELVESIRTQQESCLIFTQYIETGLMLQRTLEKEINEPVLFLHGSLSKEQRDAMVAQFQ 769

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K  +      + G GLNL    N ++ F  WW+       +E     R  + G  + V
Sbjct: 770 ARKKAIFILSLRAGGTGLNLTA-ANHVIHFDRWWNPA-----VENQATDRAHRIGQNKFV 823

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+  I + TI+E + + +  K  + + L+  
Sbjct: 824 HVHKFITRGTIEEKIDEVMNQKQHLNNELIQG 855


>gi|89897903|ref|YP_515013.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]
 gi|89331275|dbj|BAE80868.1| swi/snf family helicase 2 [Chlamydophila felis Fe/C-56]
          Length = 1165

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 75/203 (36%), Gaps = 20/203 (9%)

Query: 8    QREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++EL      +G +    +  +   +  Q+      +  +   +     K   L  ++  
Sbjct: 951  KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFA-KDVPEPGDSAKYDLLMDLLSS 1009

Query: 66   A--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
                    ++   +   L+ +         +  +  G T ++     Q   +  + +   
Sbjct: 1010 LVETGHKTVLFSQYTKMLSIIKKDLEASGVRFVYLDGSTKNRLELVNQFNEDPGLLVFLI 1069

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL  G + ++ + +WW+       +E     R  + G  R+V  Y L+  N
Sbjct: 1070 SLKAGGTGLNL-VGADTVIHYDMWWNPA-----VENQATDRVHRIGQNRSVSSYKLVTLN 1123

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            TI+E +L     K ++   ++N+
Sbjct: 1124 TIEEKILTLQNRKKSLVKKVINS 1146


>gi|315650300|ref|ZP_07903372.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487411|gb|EFU77721.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 449

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 3   QYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y K +RE + +L G   +      +K ++  Q   G +  D  +  + V   K+ ALE 
Sbjct: 241 IYSKIKRESFAELDGGGKVTVTTVLTKLLRLQQFTGGFLVADGSEKAELVSKGKLNALEE 300

Query: 62  IIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EG 107
           II+         +++   F  ++  + +   + +                  ++++    
Sbjct: 301 IIDDYVVDADKKLVIFARFRPEIDLIGQMLTKKKIKYGAIYGDVKLEDRGGIVKDFQTNE 360

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +  A   + G G+ L      + ++S+ ++   + Q + RI      + G K     
Sbjct: 361 NTKVFLAQIDTAGLGITLTAADTCV-YYSVNFNYAAYTQSLARI-----HRIGQKNICTY 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +LI + T+DE +L+ L  K  +   +++ 
Sbjct: 415 IHLITEGTVDETILKALARKEDLAKTIVDE 444


>gi|302406510|ref|XP_003001091.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
 gi|261360349|gb|EEY22777.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Verticillium albo-atrum VaMs.102]
          Length = 1392

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
           K Y +          D QG    A   ++  ++  +L N    + E ++     +     
Sbjct: 755 KLYKQMVTHNKIVVSDGQGGKTGARGLSNMIMQLRKLCNHPFVFGEVENVMNPLNISDDK 814

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K       +++ +   + +  ++                    +
Sbjct: 815 LWRTAGKFELLDRILPKYKATGHRVLMFFQMTAIMDIMEDYLRYRNYQYMRLDGTTKSDE 874

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++++N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 875 RSDLLKDFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 928

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 929 RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 973


>gi|254582697|ref|XP_002499080.1| ZYRO0E03190p [Zygosaccharomyces rouxii]
 gi|238942654|emb|CAR30825.1| ZYRO0E03190p [Zygosaccharomyces rouxii]
          Length = 1052

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYD------EEKHWKEVHDEKIKALEVII--EK 65
           +L+                 ++ N     D      E  +       K++ ++ ++   +
Sbjct: 586 ELEDIKGGKRRVLYGIDILRKICNHPDLLDRDERSKEASYGDPKRSGKMQVVKQLLLLWR 645

Query: 66  ANAAPIIVAYHFNSDLARLQKA---------------FPQGRTLDKDPCTIQEWNEGKIP 110
                 ++       L  LQ+                     T+      + E+N G   
Sbjct: 646 KEGHKALLFTQSRQMLDILQEFIAFKDQELTGLKFLRMDGTTTISIRQSLVDEFNRGDYN 705

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 706 VFLLTTRVGGIGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 759

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L+  K++
Sbjct: 760 MVTGSIEEKIYHRQIFKQFLTNKILSDPKQK 790


>gi|160915633|ref|ZP_02077841.1| hypothetical protein EUBDOL_01640 [Eubacterium dolichum DSM 3991]
 gi|158432109|gb|EDP10398.1| hypothetical protein EUBDOL_01640 [Eubacterium dolichum DSM 3991]
          Length = 1102

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 25/211 (11%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y     +  REL   +  ++ +     +   K  QL        E  H       K+K
Sbjct: 881  KLYVAHLAQVNRELSQMVNMQSTDKITILAMLTKLRQLCCEPRLVFENIHE---PSSKLK 937

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+  K N   +++   F S L                       ++    ++ + 
Sbjct: 938  ACIHLIQTLKENKQKVLLFSSFTSMLELIADELYKEGISYYILTGATNKEERRELVERFQ 997

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G GLNL      ++ +  WW+     Q  +     R  + G ++ V
Sbjct: 998  NDSTTVFLISLKAGGTGLNLTS-AEAVIHYDPWWN-----QSAQNQATDRAYRIGQRKKV 1051

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+ L+ +N+I+E + +    K  + D+ + 
Sbjct: 1052 QVFKLVMKNSIEEKIQKLQLMKKELADMFVE 1082


>gi|156553964|ref|XP_001602814.1| PREDICTED: similar to hCG32740 [Nasonia vitripennis]
          Length = 1131

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 66/204 (32%), Gaps = 32/204 (15%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEV-------------HDEKIKALEVII--EKANAAP 70
                   ++ N    +    + +EV                K+  +  ++   K     
Sbjct: 593 LVALTALRKICNHPDLFLYTDNNQEVLDENEMEKFGHWKRAGKMTVVRSLLKIWKKQGHR 652

Query: 71  IIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           +++       +  L                   + +   T+ ++N +    +        
Sbjct: 653 VLLFTQSRQMMHILEGLLQKEKYNYLRMDGTTPMGQRQLTVTKFNQDPSYFVFLLTTRVG 712

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G N ++ +   W+        +     R  + G +++V VY LI   TI+E 
Sbjct: 713 GLGVNLT-GANRVIIYDPDWNPAT-----DAQARERAWRIGQEKSVTVYRLITAGTIEEK 766

Query: 180 VLQRLRTKSTIQDLLLNALKKETI 203
           +  R   K  + + +L   ++  +
Sbjct: 767 MYHRQVFKILLSNKVLEDPRQRRL 790


>gi|108758570|ref|YP_631070.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108462450|gb|ABF87635.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1002

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 3   QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y       ++E+   L         +    ++  Q A        ++        K++ 
Sbjct: 786 VYDAVMAATRKEVVALLNEGG-SVLKALEALLRLRQAACHPALVPGQRANT---SSKVET 841

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDPCTIQEWNEG 107
           L   +E   +     +V   + S L  ++              G T ++   T +  ++ 
Sbjct: 842 LVDALETAVSEGHKALVFSQWTSLLDLIEPRLKAAGIGFGRLDGTTANRGEVTERFQSQE 901

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P+L     + G GLNL    + +     WW+     Q        R  + G +R V V
Sbjct: 902 GEPVLLMSLKAGGTGLNLTA-ADHVFLVDPWWNPAAEAQA-----ADRAHRIGQERTVMV 955

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQD 192
           Y L++Q T++E +L     K  I +
Sbjct: 956 YRLVSQGTVEERILGLQEKKRAIFE 980


>gi|308809077|ref|XP_003081848.1| putative SNF2 domain-containing protein (ISS) [Ostreococcus tauri]
 gi|116060315|emb|CAL55651.1| putative SNF2 domain-containing protein (ISS) [Ostreococcus tauri]
          Length = 1782

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 2    KQYHKFQRE--------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH- 52
            K Y  F+                     A +         +L +      +    K    
Sbjct: 1485 KMYDSFESSDAKSAAVSAVEGGGNAEGAAAHVFQTLQYLRKLCSHPKLVSDTTSKKFDPD 1544

Query: 53   --DEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQGRT-------------L 94
                K  A E             ++V     S L  ++      +               
Sbjct: 1545 MRSPKFDAGEDAKPNPAAGAGHRVLVFSQLKSLLDLVETELFTTQMRDVSWLRLDGSVAP 1604

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++++N +  I +L       G GLNL    + +VF    W+ ++     +   +
Sbjct: 1605 SQRFDVVRKFNADPSIDVLLLTTHVGGLGLNLTS-ADTVVFLEHDWNPQK-----DLQAM 1658

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             R  + G ++ V VY ++ + T++E ++   R K  + + ++NA     
Sbjct: 1659 DRAHRLGQRKTVNVYRILTRGTLEEKIMSLQRFKLDVANAVVNADNASM 1707


>gi|67464359|pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
 gi|67464360|pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
           With Dsdna
          Length = 500

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 4   YHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y      L+ ++             S  +K  Q+ +                 K      
Sbjct: 274 YKAEVENLFNNIDSVTGIKRKGXILSTLLKLKQIVDHPALLK-GGEQSVRRSGKXIRTXE 332

Query: 62  IIEK--ANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTI-QEWNEG 107
           IIE+       I +   F             +L           +  +    I +  N  
Sbjct: 333 IIEEALDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP 392

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +     + G G+NL    N ++ F  WW+       +E     R  + G  R V V
Sbjct: 393 SVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPA-----VEDQATDRVYRIGQTRNVIV 446

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + LI+  T++E + Q L  K ++   ++++
Sbjct: 447 HKLISVGTLEEKIDQLLAFKRSLFKDIISS 476


>gi|73977923|ref|XP_532592.2| PREDICTED: similar to DNA repair and recombination protein
           RAD54-like (RAD54 homolog) (hRAD54) (hHR54) [Canis
           familiaris]
          Length = 907

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F ++     +L+   +   +  S      +L N      ++   +E         
Sbjct: 582 ELYKRFLKQAKPAEELREGKMTVSS-LSSITLLKKLCNHPALIYDKCVEEEDGFEGALEI 640

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP------ 89
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 641 FPPTYSAKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 700

Query: 90  ----QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 701 VRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 759

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 760 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 808


>gi|315224242|ref|ZP_07866081.1| Snf2 family helicase [Capnocytophaga ochracea F0287]
 gi|314945790|gb|EFS97800.1| Snf2 family helicase [Capnocytophaga ochracea F0287]
          Length = 950

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y   +   R     +  E I  FN+ +  ++  +++      D+E        E++  
Sbjct: 733 KWYETEKSKVRNQLLQIN-EPITEFNTLNMLMRLRKISLHPKLVDKESKITSGKYEEVIN 791

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG 107
               + +++    ++   F S LA  ++   +             + ++        N  
Sbjct: 792 YMEELLQSS-RKALIFSSFVSHLALYEEWCNKKGIKYAKLTGETPSFERKNQVEMFQNNP 850

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I   F    +   GLNL    + ++    WW+        E+  + R  + G +  V V
Sbjct: 851 TISFFFISLKAGEVGLNLTQ-ASYVLLLDPWWNP-----FSEKQAIGRAHRIGQQNKVNV 904

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++++TI+E +++  ++K  + + +++ 
Sbjct: 905 IRFVSKDTIEEKIIKLQKSKRELSENIIDE 934


>gi|125995400|ref|NP_001075098.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Danio rerio]
 gi|124481629|gb|AAI33098.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
          Length = 1028

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH- 47
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 386 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPG 445

Query: 48  -------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 446 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 505

Query: 93  ----TLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +NE             + G G+NL    ++++ +   W+ +    
Sbjct: 506 DGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 560

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 561 -VDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 612


>gi|294056264|ref|YP_003549922.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615597|gb|ADE55752.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 1024

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            + Y     +   ++    +   N+         + ++  Q        DE     E    
Sbjct: 798  RFYQDTLEKTRREIFNLEMGGANAGRLQFAAFKELLRLRQACVDPRILDETFAASE--SA 855

Query: 55   KIKALEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQE 103
            K+ A + ++++   N + ++V   F S L            +  +  G+T ++     + 
Sbjct: 856  KLAAFDEVLDECLDNGSRMLVFSSFVSALQLLAQHLKAKGHRFNYLDGQTKNRLALCDEF 915

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              +  IP+      + G GLNL  G + +V +  WW+        E     R  + G ++
Sbjct: 916  NEDASIPVFLISLKAGGTGLNLT-GADTVVHYDPWWNPAA-----EAQATDRAHRIGQEK 969

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V    LIA NT++E VL+    K+ +   L   
Sbjct: 970  VVTSIKLIAANTVEEKVLELQAKKAELLAELFEE 1003


>gi|254975778|ref|ZP_05272250.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255093165|ref|ZP_05322643.1| putative helicase [Clostridium difficile CIP 107932]
 gi|255314907|ref|ZP_05356490.1| putative helicase [Clostridium difficile QCD-76w55]
 gi|255517581|ref|ZP_05385257.1| putative helicase [Clostridium difficile QCD-97b34]
 gi|255650692|ref|ZP_05397594.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260683779|ref|YP_003215064.1| putative helicase [Clostridium difficile CD196]
 gi|260687439|ref|YP_003218573.1| putative helicase [Clostridium difficile R20291]
 gi|260209942|emb|CBA63920.1| putative helicase [Clostridium difficile CD196]
 gi|260213456|emb|CBE05136.1| putative helicase [Clostridium difficile R20291]
          Length = 1059

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 893

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 894  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|220673001|emb|CAX12380.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
 gi|220678449|emb|CAX12948.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Danio rerio]
          Length = 1035

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH- 47
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 393 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPG 452

Query: 48  -------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 453 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 512

Query: 93  ----TLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +NE             + G G+NL    ++++ +   W+ +    
Sbjct: 513 DGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 567

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 568 -VDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 619


>gi|62667352|ref|XP_229124.3| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1062

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 417 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 476

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 477 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 536

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 537 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 591

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 592 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 643


>gi|299741616|ref|XP_001831930.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
 gi|298404796|gb|EAU89829.2| transcription activator snf2l1 [Coprinopsis cinerea okayama7#130]
          Length = 1102

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 80/229 (34%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
           + QR+ Y  +  ++I+A N  +             ++  ++      +            
Sbjct: 384 EMQRKWYRSVLEKDIDAVNGLTGKKEGKTRLMNIVMQLRKVTCHPYLFDGAEPGPPYTTD 443

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
                +  K+  L+ ++       + +++    +  L                   G   
Sbjct: 444 EHLIQNSGKMVILDKLLKMMYQKGSRVLIFSQMSRVLDILEDYCLFRGYKYCRIDGGTAH 503

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N+      +      + G G+NL    +I+V +   W+ +      +   
Sbjct: 504 EDRIAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQA 557

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+VY  I + +++E +L+R   K  +  L++   + +
Sbjct: 558 MDRAHRIGQTKQVYVYRFITEGSVEERMLERAAQKLRLDQLVIQQGRAQ 606


>gi|224085664|ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222857105|gb|EEE94652.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1206

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 27/218 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDEKI 56
            Y  F      +++     + NS        ++ N          Y    +       K+
Sbjct: 684 VYRAFL--ASTEVENILDGSRNSLYGIDVMRKICNHPDLLEREHSYHNPDYGNPERSGKM 741

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQEW 104
           K +  ++   +     +++       L   +     G    +              I E+
Sbjct: 742 KVVAQVLKVWQEQGHRVLLFTQTQQMLDIFENFLNSGGYNYRRMDGSTPIKLRMSIIDEF 801

Query: 105 NE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N  G I +        G G NL  G N ++ F   W+              R  + G K+
Sbjct: 802 NNSGDIFIFILTTKVGGLGTNLT-GANRVIIFDPDWNPSTDM-----QARERAWRIGQKK 855

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V VY LI   TI+E V  R   K  + + +L   ++ 
Sbjct: 856 DVTVYRLITGGTIEEKVYHRQIYKHFLTNKILKNPQQR 893


>gi|226943215|ref|YP_002798288.1| helicase protein [Azotobacter vinelandii DJ]
 gi|226718142|gb|ACO77313.1| helicase protein [Azotobacter vinelandii DJ]
          Length = 872

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 33  LQLANGAVYYDEEKH--WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------ 82
            Q+       ++E     +     K+ AL  ++E+  A    +++   F   L       
Sbjct: 681 RQVCCDLRLLEDEAVAGCQAADSAKLSALLPMLEELSAEGRRVLLFSQFTGMLELIAREL 740

Query: 83  --RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             R                 ++E+  G++P+      + G GLNL    + ++ F  WW+
Sbjct: 741 EARKIPYVQLTGATRDRRTPVEEFQAGRVPVFLISLKAGGAGLNLTA-ADTVIHFDPWWN 799

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   E     R  + G  + VFVY LIA+ +++E +    + K+ +   LL  
Sbjct: 800 PAA-----EAQASDRAYRIGQDKPVFVYRLIARGSVEEKIQHLQKAKAELAHGLLEG 851


>gi|118089662|ref|XP_420329.2| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1
           [Gallus gallus]
          Length = 1031

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 386 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 445

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 446 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 505

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 506 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 560

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 561 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 612


>gi|255307194|ref|ZP_05351365.1| putative helicase [Clostridium difficile ATCC 43255]
          Length = 1059

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 893

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 894  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|168023352|ref|XP_001764202.1| transcription-coupled repair protein CSB/RAD26 [Physcomitrella
           patens subsp. patens]
 gi|162684642|gb|EDQ71043.1| transcription-coupled repair protein CSB/RAD26 [Physcomitrella
           patens subsp. patens]
          Length = 802

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVY--------YDEEKHWKEVHDEKIK 57
               L    +E       NS        ++ N            + +  + +     K+ 
Sbjct: 270 YRAFLASSEVEQIFDGNRNSLFGIDILRKICNHPDLLEREHSAGHPDYGNIERSGKLKVL 329

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEG 107
           A  + + K     +++       L  ++                  + +    I E+NEG
Sbjct: 330 AQVLELWKTQGHRVLLFTQTQQMLDIVENYVTSKGYVYRRMDGNTPVKQRMQLIDEFNEG 389

Query: 108 -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +        G G NL  G N +V F   W+              R  + G K+ V 
Sbjct: 390 DHVFIFILTTKVGGLGTNL-IGANRVVIFDPDWNPSTDM-----QARERAWRIGQKKEVV 443

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +Y LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 444 IYRLITRGTIEEKVYHRQIYKHFLTNKILRDPQQR 478


>gi|255101318|ref|ZP_05330295.1| putative helicase [Clostridium difficile QCD-63q42]
          Length = 1059

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 837  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 893

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 894  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K +V 
Sbjct: 954  MDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGQKNSVQ 1007

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1008 VIKLIAKGTIEEKIIKLQESKKELINQFING 1038


>gi|300858235|ref|YP_003783218.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685689|gb|ADK28611.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205957|gb|ADL10299.1| ATP dependent helicase [Corynebacterium pseudotuberculosis C231]
 gi|302330510|gb|ADL20704.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276192|gb|ADO26091.1| ATP-dependent helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1031

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 71/218 (32%), Gaps = 26/218 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y  +  ++   +      +          K  Q+ N   ++  +     V       K+
Sbjct: 799  LYRAYVEDIQKQIDQAEGISKRGLVLSALTKIKQICNHPAHFLSDDSDVTVKGKHRSGKV 858

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
            + L  ++     +   +++   + +                      G +       ++ 
Sbjct: 859  EELMRLVSDAVESEQRLLIFTQYRAFGEILAPYLSDYFGAQIPFLHGGVSKVGRDRMVEN 918

Query: 104  WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +  P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 919  FQSPQGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V VY +I   T++E +   L  K+ +   ++   + 
Sbjct: 973  KDVTVYKMITAGTLEESIQDILDGKTQLASAVVGEGEG 1010


>gi|260801499|ref|XP_002595633.1| hypothetical protein BRAFLDRAFT_200949 [Branchiostoma floridae]
 gi|229280880|gb|EEN51645.1| hypothetical protein BRAFLDRAFT_200949 [Branchiostoma floridae]
          Length = 1464

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 41/229 (17%)

Query: 8    QRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYY----------------DEE 45
            Q+E Y D  G           +   +  +   ++ N                      ++
Sbjct: 780  QKEAYKDYLGSRECQQILDGQYQVFAGLITLRKICNHPDLVTGGPRIMVGTDESTLTKDQ 839

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRT 93
             +       K+  +  ++         +++             F  D +          T
Sbjct: 840  HYGYWKRSGKMIVVNTLLKMWHKQGHRVLLFSQSKQMLDLMEEFVQDQSYTYMRMDGTTT 899

Query: 94   LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +      I ++N +  I +        G G+NL  G N ++ F   W+            
Sbjct: 900  ISSRQPKITKFNKDTSIFVFLLTTRVGGLGVNLT-GANRVIIFDPDWNPSTDM-----QA 953

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G  + V +Y L+   TI+E +  R   K  + + +L   ++ 
Sbjct: 954  RERAWRIGQSKDVTIYRLLTTGTIEEKIYHRQIFKQFLTNRVLKDPRQR 1002


>gi|296450398|ref|ZP_06892154.1| SNF2/RAD54 family helicase [Clostridium difficile NAP08]
 gi|296879479|ref|ZP_06903473.1| SNF2/RAD54 family helicase [Clostridium difficile NAP07]
 gi|296260659|gb|EFH07498.1| SNF2/RAD54 family helicase [Clostridium difficile NAP08]
 gi|296429625|gb|EFH15478.1| SNF2/RAD54 family helicase [Clostridium difficile NAP07]
          Length = 1062

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 840  KIYSVYSKDIQDKIKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 896

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 897  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 956

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K +V 
Sbjct: 957  IDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGQKNSVQ 1010

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1011 VIKLIAKGTIEEKIIKLQESKKELINQFING 1041


>gi|13507759|ref|NP_109708.1| helicases [Mycoplasma pneumoniae M129]
 gi|2493354|sp|P75093|Y020_MYCPN RecName: Full=Uncharacterized ATP-dependent helicase MPN_020
 gi|1673793|gb|AAB95782.1| helicase-like protein [Mycoplasma pneumoniae M129]
          Length = 1030

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 24/208 (11%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y + +     +++  ++  +FN  +  +K   L +      +       +  K +A  
Sbjct: 813  KLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCSLP----KNSQGILENSAKKEAAL 868

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGK 108
             II +   N   II+   F   +                F   ++       I+++N  K
Sbjct: 869  EIIHEAIENQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAK 928

Query: 109  IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P +L A   + G G+NL     +++ F +WW+       +E     R  + G K+ V V
Sbjct: 929  NPCVLLASLKAGGVGINLTA-AEVVIHFDVWWNTA-----VENQATDRAHRIGQKKTVQV 982

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y +IA+NTI+E V Q    K  +    L
Sbjct: 983  YRIIAKNTIEERVCQVQAEKQELVSKTL 1010


>gi|153791718|ref|NP_001093467.1| probable global transcription activator SNF2L1 [Danio rerio]
 gi|148725854|emb|CAN88075.1| novel protein similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 5
           (smarca5) [Danio rerio]
 gi|148726278|emb|CAN88255.1| novel protein similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 5
           (smarca5) [Danio rerio]
          Length = 1036

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 372 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 431

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                     ++  K+ AL+ ++   +   + +++       L  L+             
Sbjct: 432 PPYTTDTHLVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRL 491

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 492 DGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 546

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 547 -VDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGR 598


>gi|126699796|ref|YP_001088693.1| putative helicase [Clostridium difficile 630]
 gi|115251233|emb|CAJ69064.1| putative DEAD-like helicase [Clostridium difficile]
          Length = 1062

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 840  KIYSVYSKDIQDKMKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 896

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 897  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 956

Query: 108  K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K +V 
Sbjct: 957  MDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGQKNSVQ 1010

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 1011 VIKLIAKGTIEEKIIKLQESKKELINQFING 1041


>gi|323454538|gb|EGB10408.1| hypothetical protein AURANDRAFT_23375 [Aureococcus anophagefferens]
          Length = 685

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENI-------EAFNSASKTVKCLQLANGAVYYD--EEKHWKEVH 52
           + Y    +     L G               A+  ++  +  N    +   E+++   + 
Sbjct: 376 QVYKSLLKRDASLLAGPEAGGDRAGASRAKMANIAMQLRKCCNHPYLFQGVEDRNLDPLG 435

Query: 53  DEKIKAL--------EVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
           D  +            +   K     ++V             F +             + 
Sbjct: 436 DHVVANCGKLVLLDKLLAKLKDRGHRVLVFSQMTALLDVLEDFMAMRDYEYCRIDGNTSY 495

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I+ +N       +      + G G+NLQ   + +V +   W+ +      +   
Sbjct: 496 EERDDLIEAYNAPNSDKFVFLLSTRAGGLGINLQT-ADTVVLYDSDWNPQA-----DLQA 549

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G K+ V VY L+  NTI+E +++R + K  +  +++   +
Sbjct: 550 MDRAHRIGQKKPVHVYRLVTANTIEEKIVERAKKKLKLDAMVVQQGR 596


>gi|301768186|ref|XP_002919520.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Ailuropoda melanoleuca]
          Length = 838

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   +  S      +L N      ++   +E         
Sbjct: 513 ELYKRFLRQAKPAEELREGKMSVSS-LSSITLLKKLCNHPALIYDKCVEEEDGFEGALEI 571

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP------ 89
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 572 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 631

Query: 90  ----QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 632 VRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 690

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 691 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 739


>gi|301633331|gb|ADK86885.1| SNF2 family N-terminal domain protein [Mycoplasma pneumoniae FH]
          Length = 1030

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 24/208 (11%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y + +     +++  ++  +FN  +  +K   L +      +       +  K +A  
Sbjct: 813  KLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCSLP----KNSQGILENSAKKEAAL 868

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGK 108
             II +   N   II+   F   +                F   ++       I+++N  K
Sbjct: 869  EIIHEAIENQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKSRHSIIEKFNNAK 928

Query: 109  IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P +L A   + G G+NL     +++ F +WW+       +E     R  + G K+ V V
Sbjct: 929  NPCVLLASLKAGGVGINLTA-AEVVIHFDVWWNTA-----VENQATDRAHRIGQKKTVQV 982

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y +IA+NTI+E V Q    K  +    L
Sbjct: 983  YRIIAKNTIEERVCQVQAEKQELVSKTL 1010


>gi|74008365|ref|XP_865429.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 10 [Canis familiaris]
          Length = 1050

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 421 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 480

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 481 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 540

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 541 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 596 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 647


>gi|307149973|ref|YP_003885357.1| SNF2-like protein [Cyanothece sp. PCC 7822]
 gi|306980201|gb|ADN12082.1| SNF2-related protein [Cyanothece sp. PCC 7822]
          Length = 1047

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 24/215 (11%)

Query: 3    QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKAL 59
             Y K   E   +++            S  +K  Q+ N    Y  E +        K+  L
Sbjct: 814  LYQKLVDESLSNIEAATGIQRRGLILSLLLKLKQVCNHPAQYLKESRLNSGEKSGKLLRL 873

Query: 60   EVIIEKAN--AAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
            E ++E+        ++   F              L R            +    I  +  
Sbjct: 874  EEMLEELVEEGDRALIFTQFAEWGKLLQPYLTQKLGREVLFLYGATPRQQRQEMIDRFQN 933

Query: 107  GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 P+      + G GLNL    N +     WW+       +E     R  + G K+ 
Sbjct: 934  DPAGPPIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRIGQKQN 987

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+  I   T++E +   + +K  + +  ++A +
Sbjct: 988  VQVHKFICTGTLEEKINDMIESKKQLAEQTVDAGE 1022


>gi|327281442|ref|XP_003225457.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 1441

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------D 43
           + Y +F   +E+Y  L GE        S      ++ N    +                +
Sbjct: 753 EVYKRFIDSKEVYQILNGE----MQIFSGLTALRKICNHPDIFSGGPKILKGVPDEELNE 808

Query: 44  EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARL----------QKAFPQG 91
           E+         K+  +E ++         +++       L  +                 
Sbjct: 809 EDHFGFWKRSGKMIVVESLLKIWYKQGHRVLLFTQSRQMLHIIEAFLKQRSYSYVKMDGT 868

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I  +N +  I +        G G+NL  G + ++ +   W+        + 
Sbjct: 869 TTVASRQPLISRFNEDTSIFIFLLTTRVGGLGVNLT-GADRVIIYDPDWNPST-----DT 922

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G  + V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 923 QARERAWRIGQTKEVTVYRLLTAGTIEEKIYHRQIFKQFLTNRILKDPKQR 973


>gi|194271429|gb|ACF37172.1| SNF2LT [Homo sapiens]
          Length = 776

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W  +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWSPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|50294289|ref|XP_449556.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528870|emb|CAG62532.1| unnamed protein product [Candida glabrata]
          Length = 1730

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 78/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +            ++ ++  ++ N    ++E +            
Sbjct: 1057 MYQQMLKHKQLFIGDQKKNKLVGLRGFNNQLMQLKKICNHPFVFEEVEDHINPTRDTNMN 1116

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + LE I+ K  A+   +++ +     +  ++                   D+
Sbjct: 1117 IWRVAGKFELLERILPKLKASRHRVLIFFQMTQIMDIMEDFLRYIDIKYLRLDGHTRSDE 1176

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+             + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1177 RGELLKLFNDPNSEYFCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1230

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1231 RAHRIGQKNEVRIIRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1275


>gi|255724370|ref|XP_002547114.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
 gi|240135005|gb|EER34559.1| SNF2-family ATP dependent chromatin remodeling factor snf21 [Candida
            tropicalis MYA-3404]
          Length = 1680

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            K Y +  R               +   N+ ++ ++  ++ N    Y+E +H+        
Sbjct: 1035 KLYQQMLRYNKLYTGDPENGAEPLTIKNANNQIMQLKKICNHPFVYEEVEHFINPSIETD 1094

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTL 94
                    K + L+ ++ K       +++ +     +  +                G   
Sbjct: 1095 DQIWRVAGKFELLDKVLPKFKATGHKVLMFFQMTQIMNIMEDFLRFRGLKYMRLDGGTKA 1154

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1155 DDRTELLKLFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1208

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +N+++E++L+R   K  I   ++ A K
Sbjct: 1209 QDRAHRIGQKNEVRILRLITENSVEEMILERAHAKLEIDGKVIQAGK 1255


>gi|169342801|ref|ZP_02863835.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
 gi|169299058|gb|EDS81130.1| helicase, SNF2/RAD54 family [Clostridium perfringens C str. JGS1495]
          Length = 1084

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+ L  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPAVTINDYMGE---SAKIEVLVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRIGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|209877158|ref|XP_002140021.1| chromatin remodelling complex SNF2H [Cryptosporidium muris RN66]
 gi|209555627|gb|EEA05672.1| chromatin remodelling complex SNF2H, putative [Cryptosporidium
           muris RN66]
          Length = 1288

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHD 53
           K Y +        L           +  ++  ++ N    +D         E        
Sbjct: 473 KIYSELLTRNLDILNNVTYNKTQMLNLLMQLRKVCNHPYLFDGVEPGPPYVEGFHMVEAS 532

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
            K+  L  ++ K  +  + +++       L  +                     +    I
Sbjct: 533 GKMVLLHKLLPKLFSQGSRVLLFSQMTRLLDIIDDYLRWCGYPYCRIDGSTPGIERQERI 592

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N+      +      + G G+NL    ++++ F   ++ +     ++   + R  + 
Sbjct: 593 DLFNKSGSDKLIFLLSTRAGGIGINL-ATADVVILFDSDFNPQ-----MDLQAMDRAHRI 646

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY  + + +++E +++R   K  +  L++   +
Sbjct: 647 GQKKTVTVYRFVTEKSVEERIVERAAKKLKLDSLIIQQGR 686


>gi|197118846|ref|YP_002139273.1| helicase [Geobacter bemidjiensis Bem]
 gi|197088206|gb|ACH39477.1| helicase, putative [Geobacter bemidjiensis Bem]
          Length = 1120

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 25   SASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            + +  +K  Q+  +  +   +        D  +  L  +  +     ++V   F S L  
Sbjct: 925  ALTAILKLRQICLSSKLILPQAPDRSPKIDFLVDQLMELFAE--GHSVLVFSQFTSFLDI 982

Query: 84   LQKAFPQG----------RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNIL 132
            +++   Q             + +    +Q + E   P +      + G GLNL    + +
Sbjct: 983  VEQGLSQHGIGFSRLDGSTPVSRRKEMVQRFQESAEPGVFLLSLKAGGRGLNLTR-ASYV 1041

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 WW+       +E     R  + G +R V +  L+ +++I+E +++  + K  +  
Sbjct: 1042 FHLDPWWNPA-----VESQASDRAHRIGQQRQVTITRLLMRHSIEEKMMELKKRKLKLYR 1096

Query: 193  LLLNALKKET 202
             LL   + E 
Sbjct: 1097 ALLEEAEHEG 1106


>gi|74008351|ref|XP_865312.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 4 [Canis familiaris]
          Length = 1042

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|196010573|ref|XP_002115151.1| hypothetical protein TRIADDRAFT_28849 [Trichoplax adhaerens]
 gi|190582534|gb|EDV22607.1| hypothetical protein TRIADDRAFT_28849 [Trichoplax adhaerens]
          Length = 849

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 26/215 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDE 54
           K Y    +     L        +  +  ++  +  N    ++       E          
Sbjct: 252 KLYKALLQRNIESLTN-EASKTSLMNMLIQLRKCVNHPYLFNGIEPEPFEIGDHLINASG 310

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQ 102
           K+  L+ ++   K+    +++       L  LQ          +              IQ
Sbjct: 311 KLFLLDKLLPYLKSRGHKVLIFSQMTRMLDILQDYLSYKDYNYERLDGSVRGEERYLAIQ 370

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  + +      + G GLNL    + ++FF   ++ +      +     R  + G  
Sbjct: 371 NFTDPDVFVFILSTKAGGVGLNLVA-ADTVIFFDSDFNPQN-----DIQAAARCHRIGQT 424

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +   +AQ+T++E++L+R   K  + D ++  
Sbjct: 425 KPVKIIRFVAQSTVEEIILKRAEAKLKLTDAVIEG 459


>gi|224541793|ref|ZP_03682332.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525290|gb|EEF94395.1| hypothetical protein CATMIT_00965 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1067

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 23/210 (10%)

Query: 2    KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y     +          + +     +   K  Q+        ++   K     K++A 
Sbjct: 847  KLYLAHLAQANQLLKTLDGSKDRIQILAMLTKLRQICCEPRIVFDDVKHK---SSKMEAC 903

Query: 60   EVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEG 107
              II   K N   IIV   F S L                       +K    +  +   
Sbjct: 904  LNIIQTYKDNNKKIIVFSSFKSLLNLLAKELDKSKTSYYMLTGDTEKEKRKGLVDAYQND 963

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +      + G GLNL      +V F  WW++             R  + G K  VFV
Sbjct: 964  DTTVFLISLKAGGTGLNLTA-AEGVVHFDPWWNMSAQ-----NQATDRAYRIGQKNKVFV 1017

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y LI  ++I+E +      K  + D  +  
Sbjct: 1018 YKLIMADSIEEKIQTLQAAKKDLADRFVEG 1047


>gi|303276396|ref|XP_003057492.1| ran-binding dexh-box helicase [Micromonas pusilla CCMP1545]
 gi|226461844|gb|EEH59137.1| ran-binding dexh-box helicase [Micromonas pusilla CCMP1545]
          Length = 1514

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 31/221 (14%)

Query: 2    KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------YDEEKHWKEV 51
            + Y  +   R++   L+G       +        ++ N            +++    +  
Sbjct: 910  EAYRAYVHSRDVEEILEG----RREALGGIDVLRKIVNHPDLLERRTKAAHEKYGEVERS 965

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TI 101
              + +    + + K     +++       L  L+    +     +              I
Sbjct: 966  GKQLVTQKVLELWKEQGHRVLLFSQTQQMLDILEAMVAKAGYPYRRMDGATPVSQRMTLI 1025

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             E+N +  + +        G G+NL  G + ++ +   W+        +     R  + G
Sbjct: 1026 DEFNTDANVFVFLLTTKVGGLGVNLT-GADRVLLYDPDWNPST-----DAQARERAWRIG 1079

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R V VY L+   TI+E V  R   K  +   +L   K+ 
Sbjct: 1080 QTREVTVYRLVTAGTIEEKVYHRQIYKEFLTSKVLKDPKQR 1120


>gi|255577952|ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
           communis]
 gi|223530676|gb|EEF32549.1| DNA repair and recombination protein RAD26, putative [Ricinus
           communis]
          Length = 1230

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 27/218 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKI 56
            Y  F      +++     + NS        ++ N     + E   +           K+
Sbjct: 688 VYRAFL--ASTEVEQIIDGSRNSLYGIDVMRKICNHPDLLEREHSCQNPDYGNPDRSGKM 745

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEW 104
           + +  ++   +     +++       L  L+     G    +              I E+
Sbjct: 746 RVVAQVLKVWREQGHRVLLFAQTQQMLDILEIFLNSGGYSYRRMDGLTPIKQRMALIDEF 805

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N    + +        G G NL  G N ++ F   W+              R  + G KR
Sbjct: 806 NNSNDVFIFILTTKVGGLGTNLT-GANRVIIFDPDWNPSTDM-----QARERAWRIGQKR 859

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V VY LI + TI+E V  R   K  + + +L   ++ 
Sbjct: 860 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR 897


>gi|265764898|ref|ZP_06093173.1| SNF family helicase [Bacteroides sp. 2_1_16]
 gi|263254282|gb|EEZ25716.1| SNF family helicase [Bacteroides sp. 2_1_16]
          Length = 1016

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 16/203 (7%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +  L      +  ++F   +  ++  QL+        +         +I      + ++
Sbjct: 806  LRNILLEQTAEKGQQSFTVLNGILRLRQLSCHPQLVLPDFIGDSGKLYQIIETFETL-RS 864

Query: 67   NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +++   F   L              AF  G + ++     +   + KI        
Sbjct: 865  EGHKVLIFSSFVKHLELVAGEFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLK 924

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + +     WW+        E   + R  + G    V  Y  I Q +I+
Sbjct: 925  AGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQNNQVIAYRFITQGSIE 978

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E ++Q    K  + +  +   ++
Sbjct: 979  EKIIQLQEEKRKLAETFITDTEQ 1001


>gi|74008349|ref|XP_865296.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 3 [Canis familiaris]
          Length = 1058

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|116672340|ref|YP_833273.1| SNF2-related protein [Arthrobacter sp. FB24]
 gi|116612449|gb|ABK05173.1| SNF2-related protein [Arthrobacter sp. FB24]
          Length = 1154

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+  A   D       V   K+ 
Sbjct: 934  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDASLVDP--SLSGVRSSKLD 991

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +E   A     ++   F   L ++++              +       + E+  G
Sbjct: 992  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLVEEKIEFCYLDGSTRNRSDVVNEFKNG 1051

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    + +     WW+        E   V R  + G  R V V
Sbjct: 1052 SAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPAS-----EAQAVDRTHRIGQARNVMV 1105

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E V+     KS +   ++  
Sbjct: 1106 YRLVAKDTIEEKVMALKAKKSQLFADVMEG 1135


>gi|253564436|ref|ZP_04841893.1| Snf2 family helicase [Bacteroides sp. 3_2_5]
 gi|251948212|gb|EES88494.1| Snf2 family helicase [Bacteroides sp. 3_2_5]
 gi|301161233|emb|CBW20771.1| putative SNF family helicase [Bacteroides fragilis 638R]
          Length = 1016

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 16/203 (7%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +  L      +  ++F   +  ++  QL+        +         +I      + ++
Sbjct: 806  LRNILLEQTAEKGQQSFTVLNGILRLRQLSCHPQLVLPDFIGDSGKLYQIIETFETL-RS 864

Query: 67   NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +++   F   L              AF  G + ++     +   + KI        
Sbjct: 865  EGHKVLIFSSFVKHLELVAGEFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLK 924

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + +     WW+        E   + R  + G    V  Y  I Q +I+
Sbjct: 925  AGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQNNQVIAYRFITQGSIE 978

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E ++Q    K  + +  +   ++
Sbjct: 979  EKIIQLQEEKRKLAETFITDTEQ 1001


>gi|134117101|ref|XP_772777.1| hypothetical protein CNBK1510 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255395|gb|EAL18130.1| hypothetical protein CNBK1510 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1409

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y   Q+           +  +  N  +  ++  ++ N    + E      V +     
Sbjct: 798  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 857

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
                  K + L+ I+ K       +++ +     +                       + 
Sbjct: 858  IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDFRGWKYCRLDGSTKAED 917

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N+   P  +      + G GLNLQ   + ++ +   W+        +     
Sbjct: 918  RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQS-ADTVIIYDTDWNP-----HADLQAQD 971

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K
Sbjct: 972  RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGK 1016


>gi|227545238|ref|ZP_03975287.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300909872|ref|ZP_07127333.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
 gi|227184771|gb|EEI64842.1| SNF2 helicase associated domain protein [Lactobacillus reuteri
            CF48-3A]
 gi|300893737|gb|EFK87096.1| non-specific serine/threonine protein kinase [Lactobacillus reuteri
            SD2112]
          Length = 1161

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + L   +Q +             ++  +  +L       D           KIK
Sbjct: 940  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLD---SGYSGPSGKIK 996

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    +   I++   F S LA                            + E+N
Sbjct: 997  ATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVDEFN 1056

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +      + G GLNL    ++++ F  WW++       E     R  + G K  
Sbjct: 1057 SYDQPAVFLISLKAGGTGLNLTS-ADVVIHFDPWWNIAA-----ENQATDRAHRIGQKNN 1110

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1111 VTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1143


>gi|182419549|ref|ZP_02950797.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237667122|ref|ZP_04527106.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
 gi|182376584|gb|EDT74159.1| DNA/RNA helicase, SNF2 [Clostridium butyricum 5521]
 gi|237655470|gb|EEP53026.1| Non-specific serine/threonine protein kinase [Clostridium butyricum
            E4 str. BoNT E BL5262]
          Length = 1060

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 21/205 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    +E+   +  E +      S      QL         E + +     K   +  I
Sbjct: 842  VYDACVKEIQDRINSEKMNNITIFSFLTTLRQLCLDPSLVTNEYNGE---SGKFNEVLNI 898

Query: 63   IEKANA-APIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG-KIP 110
            I+K      I++   F   L                     +       ++E+N      
Sbjct: 899  IKKDQKENKILLFSQFTKALKKLALKLDKEKIQYCYLDGSISSSARIKLVEEFNNDKNKR 958

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G GLNL    N+++ F  WW+       IE     R  + G KR V V  L
Sbjct: 959  VFLISLKAGGTGLNLTS-ANMVIHFDPWWNPS-----IEDQATDRAHRIGQKRDVEVIKL 1012

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLL 195
            IA+ TI+E ++     K  + + +L
Sbjct: 1013 IAKGTIEEKIVLLQEDKRNLINDVL 1037


>gi|53711505|ref|YP_097497.1| Snf2 family helicase [Bacteroides fragilis YCH46]
 gi|52214370|dbj|BAD46963.1| Snf2 family helicase [Bacteroides fragilis YCH46]
          Length = 1016

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 16/203 (7%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +  L      +  ++F   +  ++  QL+        +         +I      + ++
Sbjct: 806  LRNILLEQTAEKGQQSFTVLNGILRLRQLSCHPQLVLPDFIGDSGKLYQIIETFETL-RS 864

Query: 67   NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
                +++   F   L              AF  G + ++     +   + KI        
Sbjct: 865  EGHKVLIFSSFVKHLELVAGEFRKRKWDYAFLTGSSTNRPEEIARFNRDPKIQAFLISLK 924

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    + +     WW+        E   + R  + G    V  Y  I Q +I+
Sbjct: 925  AGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQNNQVIAYRFITQGSIE 978

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E ++Q    K  + +  +   ++
Sbjct: 979  EKIIQLQEEKRKLAETFITDTEQ 1001


>gi|159476244|ref|XP_001696221.1| SNF2/RAD54 family protein [Chlamydomonas reinhardtii]
 gi|158282446|gb|EDP08198.1| SNF2/RAD54 family protein [Chlamydomonas reinhardtii]
          Length = 1877

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 30/220 (13%)

Query: 6    KFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIK 57
            +  R      +   I   +  +        ++ N     +                 K++
Sbjct: 1140 ELYRSYLASKEVGEILEGSRRALCGIDILRKVCNHPDLLERLSAQDAEDYGNPARSGKLR 1199

Query: 58   ALEVII--EKANAAPIIVAYHFNSDLA-------------RLQKAFPQGRTLDKDPCTIQ 102
              E ++   +A     ++       L                      G  +      I 
Sbjct: 1200 VAERVLDSWRAAGHKALLFCQTQQMLDIFEKLARSKKSPAWSYHRMDGGTPVASRSRLID 1259

Query: 103  EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++N    + L        G G+NL  G   ++ +   W+        +     R  + G 
Sbjct: 1260 DFNNNPDVFLFLLTTKVGGLGVNLT-GATRVMLYDPDWNPST-----DIQARERAWRIGQ 1313

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + V +Y LI   TI+E V  R   K+ + + +L   +++
Sbjct: 1314 SQPVTIYRLITAGTIEEKVYHRQIYKNFLTNKVLRDPRQK 1353


>gi|330940925|ref|XP_003306005.1| hypothetical protein PTT_19012 [Pyrenophora teres f. teres 0-1]
 gi|311316706|gb|EFQ85893.1| hypothetical protein PTT_19012 [Pyrenophora teres f. teres 0-1]
          Length = 1393

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            K Y +        +             S   ++  +L N    ++E +            
Sbjct: 813  KLYKQLVTHNRLMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEDVMNPTKSTNDL 872

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K       +++ +     +  ++        +            
Sbjct: 873  LWRASGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMMYLRLDGATKADD 932

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 933  RSDLLRLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 986

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 987  RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 1031


>gi|74008353|ref|XP_865330.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 5 [Canis familiaris]
          Length = 1036

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|325964972|ref|YP_004242878.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
 gi|323471059|gb|ADX74744.1| DNA/RNA helicase, superfamily II, SNF2 family [Arthrobacter
            phenanthrenivorans Sphe3]
          Length = 1144

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 72/210 (34%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+  A   D       V   K+ 
Sbjct: 924  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDASLVDP--SLSAVRSSKLD 981

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +E   A     ++   F   L ++++                      + E+  G
Sbjct: 982  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLDEEKIEYCYLDGGTRNRADVVNEFKNG 1041

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    + +     WW+        E   V R  + G  R V V
Sbjct: 1042 SAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPAS-----EAQAVDRTHRIGQARNVMV 1095

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E V+     KS +   ++  
Sbjct: 1096 YRLVAKDTIEEKVMALKARKSQLFSDVMEG 1125


>gi|74008363|ref|XP_865407.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 9 [Canis familiaris]
          Length = 1053

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 405 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 464

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 465 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 524

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 525 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 579

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 580 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 631


>gi|194466323|ref|ZP_03072310.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
 gi|194453359|gb|EDX42256.1| Non-specific serine/threonine protein kinase [Lactobacillus reuteri
            100-23]
          Length = 1162

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y    + L   +Q +             ++  +  +L       D           KIK
Sbjct: 941  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRGYS---GPSGKIK 997

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            A   +I+    +   I++   F S LA                            + E+N
Sbjct: 998  ATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIEGKTKKADRLQFVDEFN 1057

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +      + G GLNL    ++++ F  WW++       E     R  + G K  
Sbjct: 1058 SYDQPAVFLISLKAGGTGLNLTS-ADVVIHFDPWWNIAA-----ENQATDRAHRIGQKNN 1111

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 1112 VTIYKMIAQNTIEEKIIEMQQKKAALANSILSG 1144


>gi|294659312|ref|XP_461680.2| DEHA2G03102p [Debaryomyces hansenii CBS767]
 gi|199433866|emb|CAG90128.2| DEHA2G03102p [Debaryomyces hansenii]
          Length = 1590

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-- 54
            K Y +  +             + +   N+ ++ ++  ++ N    Y+E ++      E  
Sbjct: 950  KLYQQMLKYNILYASKPGEGDKPVLIKNANNQIMQLRKICNHPFVYEEVENLINPASETN 1009

Query: 55   ----KIKALEVII------EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                ++     ++       K +   +++ +     +                       
Sbjct: 1010 DQIWRVAGKFELLDKVLPKFKNSGHRVLIFFQMTQIMDIMEDFLRLRGMKYMRLDGSTKA 1069

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1070 DDRTGLLKLFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1123

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1124 QDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1170


>gi|74008355|ref|XP_865346.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 6 [Canis familiaris]
          Length = 1052

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 407 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 466

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 467 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 526

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 527 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 581

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 582 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 633


>gi|326925324|ref|XP_003208867.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Meleagris gallopavo]
          Length = 792

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y  F ++     +L+   I   +  S      +L N      ++   +E         
Sbjct: 470 ELYKNFLKQAKPVEELKEGKINVSS-LSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 528

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+   +  +   +++  ++   L   +K         
Sbjct: 529 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLY 588

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 589 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 647

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 648 -----DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 696


>gi|46125857|ref|XP_387482.1| hypothetical protein FG07306.1 [Gibberella zeae PH-1]
          Length = 1427

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 80/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y +          D +G    A   ++  ++  +L N    +D  ++           
Sbjct: 802  KLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDVVENVMNPLNISNDL 861

Query: 52   ---HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K       +++ +   + +  ++      R             +
Sbjct: 862  LWRTSGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMEDYLRYRRVEYLRLDGTTKSDE 921

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 922  RSDLLREFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 975

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 976  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1020


>gi|73977788|ref|XP_867147.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 5 [Canis
           familiaris]
          Length = 1056

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 85/235 (36%), Gaps = 40/235 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   + +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGEAK 638


>gi|118094595|ref|XP_422447.2| PREDICTED: similar to putative recombination factor GdRad54 [Gallus
           gallus]
          Length = 804

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y  F ++     +L+   I   +  S      +L N      ++   +E         
Sbjct: 482 ELYKNFLKQAKPVEELKEGKINVSS-LSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 540

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+   +  +   +++  ++   L   +K         
Sbjct: 541 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLY 600

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 601 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 659

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 660 -----DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 708


>gi|91214213|ref|NP_919000.2| helicase [Burkholderia phage BcepNazgul]
 gi|88604906|gb|AAQ63367.2| helicase [Burkholderia phage BcepNazgul]
          Length = 522

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 7/199 (3%)

Query: 3   QYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y KF+R+   DL     IEA  +A+   K LQLA+G VY  E+K    VHD KI+ L  
Sbjct: 308 MYKKFERDFILDLPDGTEIEAETAAALNQKLLQLASGCVYDAEKKTHW-VHDHKIEDLTQ 366

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E+ N  P++VAY F S L RL+KAFP+ R +D +   + +WN+GKI +L  HPAS  H
Sbjct: 367 LVEELNGEPLLVAYWFKSSLERLKKAFPRARVMDAEGKLVGDWNKGKIKILLVHPASVAH 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q GG+ L  + +++ LE + Q+I R+      + G +  V V++     T+D++ +
Sbjct: 427 GLNMQKGGHHLYIYDIFYSLELYLQLIGRLA-----RQGQRHVVRVHHATMIGTVDDVAV 481

Query: 182 QRLRTKSTIQDLLLNALKK 200
             L  K   QD L   L++
Sbjct: 482 SSLTRKRNAQDDLFVRLRR 500


>gi|149060085|gb|EDM10901.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 (predicted) [Rattus
           norvegicus]
          Length = 985

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 340 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 399

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 400 PPYTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 459

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 460 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 514

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 515 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 566


>gi|312220846|emb|CBY00787.1| similar to SNF2 family ATP-dependent chromatin-remodeling factor
            snf21 [Leptosphaeria maculans]
          Length = 1416

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     R +  D +G        ++  ++  +L N    ++E +            
Sbjct: 807  KLYKQLVTHNRFMVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEEVEEVMNPTKSTNDL 866

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K       +++ +     +  ++                     
Sbjct: 867  LWRSAGKFELLDRILPKFQATGHRVLMFFQMTQIMNIMEDYLRLRGMQYLRLDGATKADD 926

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 927  RSELLKLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 980

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 981  RAHRIGQKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 1025


>gi|73997935|ref|XP_534944.2| PREDICTED: similar to DNA excision repair protein ERCC-6 (Cockayne
           syndrome protein CSB) [Canis familiaris]
          Length = 1486

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 39/229 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------------DEE 45
           K Y  F   +E+Y  L G+        S  V   ++ N    +              +E+
Sbjct: 770 KVYQNFIDSKEVYRILNGD----MQIFSGLVALRKICNHPDLFSGGPKNLKTIPDDDEED 825

Query: 46  KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
           +        K+  +E ++         +++       L  L+                  
Sbjct: 826 QFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTA 885

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +      I  +N +  I +        G G+NL  G N ++ +   W+        +   
Sbjct: 886 IASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DTQA 939

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 940 RERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 988


>gi|110801800|ref|YP_698913.1| Snf2/Rad54 family helicase [Clostridium perfringens SM101]
 gi|110682301|gb|ABG85671.1| helicase, SNF2/RAD54 family [Clostridium perfringens SM101]
          Length = 1084

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|164419749|ref|NP_620604.2| probable global transcription activator SNF2L1 isoform b [Homo
           sapiens]
 gi|57208176|emb|CAI42682.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208837|emb|CAI42612.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
          Length = 1042

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|74008375|ref|XP_865514.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 15 [Canis familiaris]
          Length = 1040

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|110800752|ref|YP_696312.1| Snf2/Rad54 family helicase [Clostridium perfringens ATCC 13124]
 gi|110675399|gb|ABG84386.1| helicase, SNF2/RAD54 family [Clostridium perfringens ATCC 13124]
          Length = 1084

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPAVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|312130874|ref|YP_003998214.1| snf2-related protein [Leadbetterella byssophila DSM 17132]
 gi|311907420|gb|ADQ17861.1| SNF2-related protein [Leadbetterella byssophila DSM 17132]
          Length = 962

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 21/206 (10%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y + +  L   + Q              K  Q+AN                 K   + 
Sbjct: 746 KLYDETKSYLRNQIMQEAGKPGMLVLQGLSKLRQIANHPAMVLPHYS---GGSGKGIDIL 802

Query: 61  VIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
             I++  +  +  ++   F   L           +   +  G T ++     +  N  + 
Sbjct: 803 SRIKEVVSEGSKTLIFSQFVKHLKFVAEGLRAEKIPYLYLDGSTKNRMELVNRFQNSAEE 862

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL      +     WW+       IE   V R  + G  + VF Y 
Sbjct: 863 LIFLISLKAGGVGLNLTA-AENVFLLDPWWNPA-----IEAQAVDRAHRIGQTKTVFSYK 916

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QNTI+E +++   TK  + D L+
Sbjct: 917 FITQNTIEEKIVELQNTKRQLFDELI 942


>gi|253700371|ref|YP_003021560.1| SNF2-related protein [Geobacter sp. M21]
 gi|251775221|gb|ACT17802.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1120

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 22/191 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            + +  +K  Q+   +     +         KI  L   +++  A    ++V   F S L 
Sbjct: 925  ALTAILKLRQICLSSKLILPQA---PDRSPKIDFLVDQLQELFAEGHSVLVFSQFTSFLD 981

Query: 83   RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++   Q             + +    +Q + E   P +      + G GLNL    + 
Sbjct: 982  IVEQGLSQHGIGFSRLDGSTPVSRRKEMVQRFQESAEPGVFLLSLKAGGRGLNLTR-ASY 1040

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+       +E     R  + G +R V +  L+ +++I+E +++  + K  + 
Sbjct: 1041 VFHLDPWWNPA-----VESQASDRAHRIGQQRQVTITRLLMRHSIEEKMMELKKRKLKLY 1095

Query: 192  DLLLNALKKET 202
              LL   + E 
Sbjct: 1096 RALLEEAEHEG 1106


>gi|119632239|gb|EAX11834.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_b [Homo
           sapiens]
          Length = 1029

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 384 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 443

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 444 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 503

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 504 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 558

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 559 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 610


>gi|207343880|gb|EDZ71203.1| YJR035Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1046

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 566 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 625

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 626 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 685

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 686 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 739

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 740 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 770


>gi|67923123|ref|ZP_00516613.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67855021|gb|EAM50290.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 1046

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 68/217 (31%), Gaps = 24/217 (11%)

Query: 2    KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHDEKI 56
            K Y +        ++ +          S  +K  Q+ N   ++ ++K     ++      
Sbjct: 811  KLYQQLVDNSLVAIEEKTGIERKGLILSLLLKLKQICNHPAHFLKQKSLKTAEQSGKLLR 870

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +          ++   F+               +            +    I  + 
Sbjct: 871  LEEMLEELIEEGDHALIFTQFSEWGKLLQPYLQKKFQQDVLFLYGATRRVQRQEMIDRFQ 930

Query: 106  EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +      +      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 931  QDPNGPRIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRLGQKR 984

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V+  +   T++E + + L +K  + +  ++A ++
Sbjct: 985  NVQVHKFVCTGTLEEKINEMLESKQKLAEQTVDAGEQ 1021


>gi|550429|emb|CAA57290.1| RAD26 [Saccharomyces cerevisiae]
          Length = 1085

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|6322495|ref|NP_012569.1| Rad26p [Saccharomyces cerevisiae S288c]
 gi|730465|sp|P40352|RAD26_YEAST RecName: Full=DNA repair and recombination protein RAD26; AltName:
           Full=ATP-dependent helicase RAD26
 gi|506419|gb|AAA34655.1| gtA1085 [Saccharomyces cerevisiae]
 gi|1015683|emb|CAA89562.1| RAD26 [Saccharomyces cerevisiae]
 gi|285812926|tpg|DAA08824.1| TPA: Rad26p [Saccharomyces cerevisiae S288c]
          Length = 1085

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|168217982|ref|ZP_02643607.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
 gi|182379962|gb|EDT77441.1| helicase, SNF2/RAD54 family [Clostridium perfringens NCTC 8239]
          Length = 1084

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|168209303|ref|ZP_02634928.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
 gi|170712526|gb|EDT24708.1| helicase, SNF2/RAD54 family [Clostridium perfringens B str. ATCC
            3626]
          Length = 1084

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPAVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|326430759|gb|EGD76329.1| hypothetical protein PTSG_01031 [Salpingoeca sp. ATCC 50818]
          Length = 752

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 49/238 (20%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK----- 55
           M+ Y           +   +   +  +   +  +L N      ++   K    +K     
Sbjct: 401 MEMYKAMLGAKMKR-KDGTVTGSS-LAFITELKKLCNHPQLLHDKIAGKGKTKDKAFGAL 458

Query: 56  ------------------------IKALEVIIEKANAAPIIVAYHFNSDLARL------- 84
                                   +  L   I+      I++  ++   L          
Sbjct: 459 DPFLPQLKPSMQRLQPQLSGKLAVLDCLLATIKMQTTDKIVLVSNYTQTLELFTTLCALR 518

Query: 85  ---QKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      T+ +    +  +N+      +      + G GLNL  G N LV F   W
Sbjct: 519 GYQYVRLDGSMTIKRRQKIVDRFNDPTSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDW 577

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G  +  FVY  +   TI+E +LQR   K  +   +++ 
Sbjct: 578 NPAN-----DEQAMARVWRDGQTKLCFVYRFVTTGTIEEKILQRQAHKKALSQCVVDD 630


>gi|223933727|ref|ZP_03625701.1| Non-specific serine/threonine protein kinase [Streptococcus suis
            89/1591]
 gi|223897608|gb|EEF63995.1| Non-specific serine/threonine protein kinase [Streptococcus suis
            89/1591]
          Length = 1030

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + +         I        S   +  Q+ +    + EE   +      +K L + 
Sbjct: 815  QQMRTQ-IAGADDAQINRSKIEILSGITRLRQICDTPSLFMEEFSGESGKLNSLKELLLQ 873

Query: 63   IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +++     +++   F + L                       ++     Q +N G     
Sbjct: 874  LKEGEH-RVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+       +E   ++R  + G    V  Y LI 
Sbjct: 933  LISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQTEKVECYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +    K  +   +L+  +  
Sbjct: 987  RGTIEEKIQELQENKKNLVKTVLDGNESR 1015


>gi|326924536|ref|XP_003208483.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Meleagris gallopavo]
          Length = 1043

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 398 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 457

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 458 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 517

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 518 DGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 572

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 573 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 624


>gi|74008371|ref|XP_865480.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 13 [Canis familiaris]
          Length = 1062

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|184201460|ref|YP_001855667.1| SNF2 family helicase [Kocuria rhizophila DC2201]
 gi|183581690|dbj|BAG30161.1| putative helicase [Kocuria rhizophila DC2201]
          Length = 925

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 23/209 (11%)

Query: 3   QYHK-FQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +  QRE    L      +   F           LA      D E         K+ A
Sbjct: 707 AYDRRLQRERAKILGLLRDFDKNRFTIFQSLTTLRMLALDPALVDPESTAA---SSKLDA 763

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGK 108
           L   + +        +V   F S L  + +              +       ++ +  G+
Sbjct: 764 LFEQLPQLLQEGHRPLVFSQFTSFLKIVARRLDEAGIAYAYLDGSTKDRAAALKTFRSGR 823

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+      + G G+NL    +       WW+        E   V R  + G  R V VY
Sbjct: 824 APVFLVSLKAGGFGINLTE-ADYCYLLDPWWNPAA-----ENQAVDRTHRIGQTRKVMVY 877

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++AQ+TI+E V++    K+ +   +L+ 
Sbjct: 878 RMVAQDTIEEKVMELKARKAELFSAVLDD 906


>gi|18310607|ref|NP_562541.1| helicase, SNF2/RAD54 family [Clostridium perfringens str. 13]
 gi|18145288|dbj|BAB81331.1| SWI/SNF family helicase [Clostridium perfringens str. 13]
          Length = 1084

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKIEALVEILNQGV 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|302024348|ref|ZP_07249559.1| SNF2 family DNA/RNA helicase [Streptococcus suis 05HAS68]
 gi|330833343|ref|YP_004402168.1| Non-specific serine/threonine protein kinase [Streptococcus suis ST3]
 gi|329307566|gb|AEB81982.1| Non-specific serine/threonine protein kinase [Streptococcus suis ST3]
          Length = 1030

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + +         I        S   +  Q+ +    + EE   +      +K L + 
Sbjct: 815  QQMRTQ-IAGADDAQINRSKIEILSGITRLRQICDTPSLFMEEFSGESGKLNSLKELLLQ 873

Query: 63   IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +++     +++   F + L                       ++     Q +N G     
Sbjct: 874  LKEGEH-RVLIFSQFRNMLEKIEEQLVEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+       +E   ++R  + G    V  Y LI 
Sbjct: 933  LISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQTEKVECYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +    K  +   +L+  +  
Sbjct: 987  RGTIEEKIQELQENKKNLVKTVLDGNESR 1015


>gi|260790077|ref|XP_002590070.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
 gi|229275258|gb|EEN46081.1| hypothetical protein BRAFLDRAFT_123437 [Branchiostoma floridae]
          Length = 1878

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
               K+ AL++++   K     +++       +  L++                +  D+  
Sbjct: 1417 DSGKLYALDILLTRLKQQGHRVLIYSQMTRMIDILEEFMWHRKHTYMRLDGSSKISDRRD 1476

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                      I +      + G G+NL    + ++F+   W+       +++  + R  +
Sbjct: 1477 MVEDFQQRSDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHR 1530

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G  + V VY LI + TI+E +LQR R KS IQ ++++  K
Sbjct: 1531 LGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGK 1571


>gi|299471324|emb|CBN79280.1| CHROMODOMAIN HELICASE DNA BINDING [Ectocarpus siliculosus]
          Length = 2463

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 37/231 (16%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------------E 44
            + Y     +        +    +  +  +  ++  +  N                    E
Sbjct: 1081 QYYRAIYEQNTTFLLQGKKRAQDGPSLMNLAMQLRKCCNHPYLITGVEDAVRVQMGDSGE 1140

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
            +K     H  K+  L+ ++   K     +++   F   L  L+                 
Sbjct: 1141 DKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKIMLNILEDYLIASGIPYGRIDGSI 1200

Query: 98   -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    I  +        ++     + G G+ L    +  + +   W+ +      + 
Sbjct: 1201 QGNLRQKAIDSFQAPDSDMFVMLLSTKAGGVGITLTA-ADTCIIYDSDWNPQN-----DV 1254

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G  ++V VY L+   T +  + +    K  +   +L++ + +
Sbjct: 1255 QAQARCHRIGQTKSVKVYRLLVAKTYEMHMFKTASKKLGLDQAVLSSSRPQ 1305


>gi|172040368|ref|YP_001800082.1| putative DNA/RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851672|emb|CAQ04648.1| putative DNA/RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 1059

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 75/217 (34%), Gaps = 25/217 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIK 57
             Y  +  ++   L+  +        +  VK  Q+ N   ++  +        +    KI+
Sbjct: 803  LYQAYIAQVEEALEQGSASRRGLILASLVKIKQICNHPAHFAGDGSGILRGGKHRSPKIE 862

Query: 58   ALEVIIEKA--NAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
             +  +I +A      +++   F            ++            +  +    + ++
Sbjct: 863  RIVELIGQAVAEGKKVLLFTQFPSFGRMLAPAIEAEYGMPVLQLDGAVSRSRRTELVAQF 922

Query: 105  NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                 P ++     + G G+ L    ++++    WW+       +E     R  + G ++
Sbjct: 923  QRDSGPGVMLLSVRAGGTGITLTR-ASVVIHIDRWWNPA-----VEDQATDRAYRIGQEQ 976

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V VY  ++  T+DE + + +  K  +   ++   + 
Sbjct: 977  DVDVYKFVSAGTLDERIHEIITGKRELAGTVVGEGEG 1013


>gi|327539289|gb|EGF25911.1| Non-specific serine/threonine protein kinase [Rhodopirellula
           baltica WH47]
          Length = 647

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 4   YHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E    L+   E++   +     ++  Q+ N      +         ++++A   
Sbjct: 410 YETAEKEGVVHLEELEESLTVQHVFELVLRLKQICN-----FDPVTNSSAKLQRLEADME 464

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEW-NEGKIPLL 112
            +  A+    I+   +   + +++          +       K    I+++ N+    ++
Sbjct: 465 EV-AASGQKAILFSQWTKTIDKMRPTLERFGPLEYHGKIPHKKREGVIEQFKNDPNSHII 523

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   GLNLQ+    +  F  WW+       IE   + R  + G   +V V  ++A
Sbjct: 524 LMSYGAGSVGLNLQF-CRYVFLFDRWWNPA-----IEDQAINRAHRIGAAGSVTVSRMMA 577

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
            NTI++ +   L  K  + D+L 
Sbjct: 578 VNTIEQRIAAVLDQKREMFDMLF 600


>gi|32477129|ref|NP_870123.1| SWF/SNF family helicase [Rhodopirellula baltica SH 1]
 gi|32447677|emb|CAD79278.1| swi/snf family helicase_2 [Rhodopirellula baltica SH 1]
          Length = 647

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 4   YHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   ++E    L+   E++   +     ++  Q+ N      +         ++++A   
Sbjct: 410 YETAEKEGVVHLEELEESLTVQHVFELVLRLKQICN-----FDPVTNSSAKLQRLEADME 464

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEW-NEGKIPLL 112
            +  A+    I+   +   + +++          +       K    I+++ N+    ++
Sbjct: 465 EV-AASGQKAILFSQWTKTIDKMRPTLERFGPLEYHGKIPHKKREGVIEQFKNDPNSHII 523

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   GLNLQ+    +  F  WW+       IE   + R  + G   +V V  ++A
Sbjct: 524 LMSYGAGSVGLNLQF-CRYVFLFDRWWNPA-----IEDQAINRAHRIGAAGSVTVSRMMA 577

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
            NTI++ +   L  K  + D+L 
Sbjct: 578 VNTIEQRIAAVLDQKREMFDMLF 600


>gi|300855333|ref|YP_003780317.1| putative SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
 gi|300435448|gb|ADK15215.1| predicted SNF2 family helicase [Clostridium ljungdahlii DSM 13528]
          Length = 1080

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +       ++ +              S   K  QL           +     + K
Sbjct: 853  KVYKTYADHAVDLIEKKVKEDEFKNSKIEILSYITKLRQLCLDPSILI---NNYSGGNGK 909

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            + AL  ++ K+      I+V   F S L                      L++    +++
Sbjct: 910  MDALVELLHKSIAQGHRILVFSQFTSVLKNIGEKISGEKIPFSYLDGTIKLEERINIVKK 969

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+GK  +      + G GLNL    ++++ F  WW+       +E     R  + G K 
Sbjct: 970  FNKGKNSVFLISLKAGGTGLNLTS-ADVVIHFDPWWNTA-----VEEQAADRTHRIGQKN 1023

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  +IA+ TI+E ++     K  + + L+ 
Sbjct: 1024 VVEVIKIIAKGTIEEKIVLLQNEKKKLIEKLME 1056


>gi|296478735|gb|DAA20850.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a5 [Bos taurus]
          Length = 1052

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|321263831|ref|XP_003196633.1| chromatin structure remodeling complex protein STH1 [Cryptococcus
            gattii WM276]
 gi|317463110|gb|ADV24846.1| Chromatin structure remodeling complex protein STH1, putative
            [Cryptococcus gattii WM276]
          Length = 1430

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y   Q+           +  +  N  +  ++  ++ N    + E      V +     
Sbjct: 819  KLYESVQKYKTLPTDMSVAKPQKRQNLQNALMQLRKICNHPYVFREVDEDFTVGNTTDEQ 878

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
                  K + L+ I+ K       +++ +     +                       + 
Sbjct: 879  IIRVAGKFELLDRILPKLFKTGHKVLIFFQMTEIMTIVSDFFDYRGWKYCRLDGSTKAED 938

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N+   P  +      + G GLNLQ   + ++ +   W+        +     
Sbjct: 939  RQTLLSTFNDPNSPYQVFILSTRAGGLGLNLQS-ADTVIIYDTDWNP-----HADLQAQD 992

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI+  T++ELVL R + K  I   ++ A K
Sbjct: 993  RAHRIGQKKEVRVLRLISSGTVEELVLARAQRKLEIDGKVIQAGK 1037


>gi|168207158|ref|ZP_02633163.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
 gi|170661452|gb|EDT14135.1| helicase, SNF2/RAD54 family [Clostridium perfringens E str. JGS1987]
          Length = 1084

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|157427958|ref|NP_001098886.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Bos taurus]
 gi|157279332|gb|AAI53226.1| SMARCA5 protein [Bos taurus]
          Length = 1052

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|151945105|gb|EDN63356.1| DNA dependent ATPase [Saccharomyces cerevisiae YJM789]
          Length = 1085

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|74008381|ref|XP_865569.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 18 [Canis familiaris]
          Length = 1048

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|259147500|emb|CAY80752.1| Rad26p [Saccharomyces cerevisiae EC1118]
          Length = 1085

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|190409514|gb|EDV12779.1| DNA dependent ATPase [Saccharomyces cerevisiae RM11-1a]
          Length = 1085

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|256270798|gb|EEU05949.1| Rad26p [Saccharomyces cerevisiae JAY291]
          Length = 1085

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|301766464|ref|XP_002918637.1| PREDICTED: probable global transcription activator SNF2L1-like
           isoform 2 [Ailuropoda melanoleuca]
          Length = 1042

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|74008379|ref|XP_865551.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 17 [Canis familiaris]
          Length = 1063

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|74008367|ref|XP_865444.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 11 [Canis familiaris]
          Length = 1068

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|74008377|ref|XP_865534.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 16 [Canis familiaris]
          Length = 1052

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|108762463|ref|YP_629793.1| SNF2/helicase domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108466343|gb|ABF91528.1| SNF2/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 1208

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 27/213 (12%)

Query: 3    QYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +     DL+       E        +   +   LA+    YD      ++   K+
Sbjct: 972  LYEDARLAALSDLETRKPKMKEQERRIEILAALTRLRLLASHPRLYD---AGSKLESAKL 1028

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEW 104
            +    ++ +  A     +V   F S LA +++         +              ++ +
Sbjct: 1029 ERFMELVRELRAEGHRALVFSQFTSHLALVREVLDAEGIDYEYLDGQTPAGARAERVRAF 1088

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             EG +PL      + G GLNL      ++    WW+       +E     R  + G +R 
Sbjct: 1089 QEGDVPLFLISLKAGGFGLNLTA-ATTVIHLDPWWNPA-----VEDQASDRAHRIGQERP 1142

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V VY L+ + TI+E +L     K  +   +L  
Sbjct: 1143 VTVYRLVTRGTIEEQMLSLHEHKRALVAGVLEG 1175


>gi|74008369|ref|XP_865464.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 12 [Canis familiaris]
          Length = 1040

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|297836766|ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332105|gb|EFH62524.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1181

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 25/189 (13%)

Query: 32  CLQLANGAVYYDEEKHWKEVH------DEKIKALEVII--EKANAAPIIVAYHFNSDLAR 83
             ++ N     + E   +           K+K +  ++   K     +++       L  
Sbjct: 697 MRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDI 756

Query: 84  LQKAFPQGRTLDKDP----------CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
           L+          +              I E+N    + +        G G NL  G N +
Sbjct: 757 LESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSDDVFVFVLTTKVGGLGTNLT-GANRV 815

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + F   W+              R  + G K+ V VY LI + TI+E V  R   K  + +
Sbjct: 816 IIFDPDWNPSNDM-----QARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTN 870

Query: 193 LLLNALKKE 201
            +L   ++ 
Sbjct: 871 KILKNPQQR 879


>gi|118581141|ref|YP_902391.1| SNF2-related protein [Pelobacter propionicus DSM 2379]
 gi|118503851|gb|ABL00334.1| SNF2-related protein [Pelobacter propionicus DSM 2379]
          Length = 1164

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
            + +  ++  Q+                   K+  L   + +       ++V   F S L 
Sbjct: 969  ALTALLRLRQICLAPSLALPGSSDS---SPKLDFLVEQLAELRDEGHSVLVFSQFTSYLD 1025

Query: 83   RLQKAFPQGR----------TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNI 131
             +++A  +               +    +Q +     P +      + G GLNL      
Sbjct: 1026 MVEEALKRHHLPNLRLDGSTPTPQRKRLVQGFQHSDSPLVFLISLKAGGKGLNLTR-ATY 1084

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+       +E     R  + G  R V +  LI ++TI+E ++     K  + 
Sbjct: 1085 VYHLDPWWNPA-----VENQASDRAHRLGQTRQVTITRLIMRHTIEEKMMALKEQKQKLY 1139

Query: 192  DLLLNA 197
              +L  
Sbjct: 1140 RAILEE 1145


>gi|74008373|ref|XP_865495.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 14 [Canis familiaris]
          Length = 1063

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 587

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 588 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 639


>gi|323347929|gb|EGA82189.1| Rad26p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1085

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGA--------VYYDEEKHWKEVHDEKIKALEVIIEK 65
           DL        N         ++ N           +  +    K     ++    +++  
Sbjct: 605 DLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQVVKQLLLLWH 664

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNEGKIP 110
                 ++       L  L++                             +  +N     
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G N ++ F   W+              R  + G KR V +Y L
Sbjct: 725 VFLLTTRVGGLGVNLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   +I+E +  R   K  + + +L   K++
Sbjct: 779 MVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809


>gi|299115203|emb|CBN74034.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1524

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 37/231 (16%)

Query: 2   KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------------- 44
           + Y              + +  +A +  +  ++  +  N                     
Sbjct: 670 QYYRAIYDRNTTFLLQGKKQAKDAPSLMNLAMQLRKCCNHPFLITGVEDDVSQQLGGNKT 729

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
            K     H  K+  L+ ++   K     +++   F   L  L+                 
Sbjct: 730 SKEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKIMLDILEDYLIASDISYGRIDGDI 789

Query: 96  ---KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +    I  +        ++     + G G+ L    +  + +   W+ +      + 
Sbjct: 790 QGRQRQKEIDSFQAPDSDMLVMLLSTRAGGVGITLTA-ADTCIIYDSDWNPQN-----DV 843

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G  ++V VY L+   T +  + +    K  + + +L+  + +
Sbjct: 844 QAQARCHRIGQTKSVKVYRLLVAKTYETHMFKTASRKLGLDEAVLSGTRPQ 894


>gi|62088588|dbj|BAD92741.1| excision repair cross-complementing rodent repair deficiency,
           complementation group 6 variant [Homo sapiens]
          Length = 870

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 34/206 (16%)

Query: 24  NSASKTVKCLQLANGAVYY---------------DEEKHWKEVHDEKIKALEVII--EKA 66
              S  +   ++ N    +               +E++        K+  +E ++     
Sbjct: 171 QIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHK 230

Query: 67  NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
               +++       L  L+                 T+      I  +N +  I +    
Sbjct: 231 QGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLT 290

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+        +     R  + G K+ V VY L+   T
Sbjct: 291 TRVGGLGVNLT-GANRVVIYDPDWNPST-----DTQARERAWRIGQKKQVTVYRLLTAGT 344

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKE 201
           I+E +  R   K  + + +L   K+ 
Sbjct: 345 IEEKIYHRQIFKQFLTNRVLKDPKQR 370


>gi|118092751|ref|XP_421656.2| PREDICTED: similar to excision repair protein [Gallus gallus]
          Length = 1495

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           + Y  F   +E+Y  L G+        S  V   ++ N    +       +         
Sbjct: 769 QVYQNFIDSKEVYQILNGD----MQVFSGLVALRKICNHPDLFSGGPKILKCVPDADLEE 824

Query: 51  -------VHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQG 91
                      K+  +E ++         ++              F  D           
Sbjct: 825 ADQFGYWKRSGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGT 884

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I  +N +  I +        G G+NL  G + ++ +   W+        + 
Sbjct: 885 TTIASRQPLITRYNEDKSIFIFLLTTRVGGIGVNLT-GADRVIIYDPDWNPST-----DT 938

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 939 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 989


>gi|74008361|ref|XP_865393.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform b
           isoform 8 [Canis familiaris]
          Length = 998

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 353 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 472

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 579


>gi|269796289|ref|YP_003315744.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098474|gb|ACZ22910.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter keddieii
            DSM 10542]
          Length = 1227

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)

Query: 3    QYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             Y + +R     L  E     F          Q +      D     ++V   K++ L  
Sbjct: 1012 AYLQRERTKVLGLVDEFGEHRFEVFRSLTVLRQASLDVSLVD--AEHEKVPSSKLEVLYE 1069

Query: 62   IIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQEWNEGKIPL 111
            +++        ++V   F   L R++    +             +   TI+ +  G+  +
Sbjct: 1070 MLDDILAEGHSVLVFSQFTQFLGRVRAHLDRKDVDYSYLDGRTRRRAETIERFTSGETKV 1129

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G GLNL    +  +    WW+        E   V R  + G  R V VY ++
Sbjct: 1130 FLISLKAGGFGLNLTA-ADYCILLDPWWNPAA-----EAQAVDRAHRIGQTRNVNVYRMV 1183

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            + +TI+E V+    +KS +   +L+
Sbjct: 1184 STDTIEEKVMALKASKSKLFASVLD 1208


>gi|66813000|ref|XP_640679.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60468700|gb|EAL66702.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1655

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 33/221 (14%)

Query: 8    QRELYCDLQGENIEAF-----NSASKTVKCLQLANGA-VYYDEEKHWKEVH-------DE 54
            ++     L   +I++      N+        ++ N   + + +       H         
Sbjct: 1054 EKLYLEFLDSNDIKSVLDGRRNALYGIDILKKICNHPDILHMDASDEDRPHDYGNIERSA 1113

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTI 101
            K+K +E I+         +++       L  +++        +           +  C +
Sbjct: 1114 KLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLV 1173

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +++N +  + +        G GLNL  G N ++ F   W+              R  + G
Sbjct: 1174 EQFNIDPSLFIFLLTTKVGGLGLNLT-GANRVILFDPDWNPSTDM-----QARERVYRIG 1227

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             K+AV +Y LI   TI+E +  R   K  + + +L   +++
Sbjct: 1228 QKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKILKDPRQK 1268


>gi|253752403|ref|YP_003025544.1| putative helicase [Streptococcus suis SC84]
 gi|253754229|ref|YP_003027370.1| helicase [Streptococcus suis P1/7]
 gi|253756163|ref|YP_003029303.1| helicase [Streptococcus suis BM407]
 gi|251816692|emb|CAZ52333.1| putative helicase [Streptococcus suis SC84]
 gi|251818627|emb|CAZ56461.1| putative helicase [Streptococcus suis BM407]
 gi|251820475|emb|CAR47204.1| putative helicase [Streptococcus suis P1/7]
 gi|319758808|gb|ADV70750.1| SNF2 family DNA/RNA helicase [Streptococcus suis JS14]
          Length = 1030

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + +         I        S   +  Q+ +    + EE   +      +K L + 
Sbjct: 815  QQMRTQ-IAGADDAQINRSKIEILSGITRLRQICDTPSLFMEEFSGESGKLNSLKELLLQ 873

Query: 63   IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +++     +++   F + L                       ++     Q +N G     
Sbjct: 874  LKEGEH-RVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+       +E   ++R  + G    V  Y LI 
Sbjct: 933  LISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQTEKVECYRLIT 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +    K  +   +L+  +  
Sbjct: 987  RGTIEEKIQELQENKKNLVKTVLDGNESR 1015


>gi|182626118|ref|ZP_02953879.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
 gi|177908639|gb|EDT71160.1| helicase, SNF2/RAD54 family [Clostridium perfringens D str. JGS1721]
          Length = 1084

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     KI+AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKIEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGIGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|154312352|ref|XP_001555504.1| hypothetical protein BC1G_06209 [Botryotinia fuckeliana B05.10]
 gi|150850172|gb|EDN25365.1| hypothetical protein BC1G_06209 [Botryotinia fuckeliana B05.10]
          Length = 1096

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 27/191 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEV-------HDEKIKALEVII--EKANAAPIIVAYHFNSDLA 82
             ++ N     D+    K            K++ ++ ++   K      ++       L 
Sbjct: 635 LRKICNHPDLLDKRLKNKPDYKWGNGNKSGKMQVVKALLQMWKGYGHKTLLFSQGVQMLD 694

Query: 83  RLQKA-----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
            L++               G  +      + ++N + ++ +        G G+NL  G N
Sbjct: 695 ILEEFVKKLGGFNYLRMDGGTAVKDRQTLVDQFNNDPEMHVFLLTTKVGGLGVNLT-GAN 753

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ F   W+        +     R  + G K+ V +Y L+   TI+E +  R   K  +
Sbjct: 754 RVIIFDPDWNPST-----DVQARERAWRLGQKKEVTIYRLMTAGTIEEKIYHRQIFKQFL 808

Query: 191 QDLLLNALKKE 201
            + +L   K+ 
Sbjct: 809 TNKILKDPKQR 819


>gi|119632238|gb|EAX11833.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_a [Homo
           sapiens]
          Length = 946

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 335 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 394

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 395 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 454

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 455 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 509

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 510 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 561


>gi|127512820|ref|YP_001094017.1| SNF2-related protein [Shewanella loihica PV-4]
 gi|126638115|gb|ABO23758.1| SNF2-related protein [Shewanella loihica PV-4]
          Length = 1161

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 53/239 (22%)

Query: 3    QYHKFQR------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------- 43
             Y   +       +L     G        ++  +K  Q+       +             
Sbjct: 901  LYETIRLTVAEQVQLALRQTGAKANRLMISNALLKLRQVCCHPAMLNLGQLGQVGETENS 960

Query: 44   ------------------EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR 83
                                +        K+  LE  +     +   I++   F S L  
Sbjct: 961  KVAISPEVNLSQSVTGLDGAQDELNAESSKLAWLENKLPSMIEDGRNILIFSSFTSMLDL 1020

Query: 84   LQKAFPQGRTLDK--------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            + +   + +   +            I+ +  G++ +      + G GLNL    ++++  
Sbjct: 1021 IAEQLERQQIGYEMLTGRSRHRDRIIERFRRGEVNVFLISLKAGGSGLNLTE-ADVVIHV 1079

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              WW+        E     R  + G  + VFVY LI QNT++E + Q  ++K  +   +
Sbjct: 1080 DPWWNPAA-----EEQASDRAYRIGQDKPVFVYKLICQNTVEERIQQLQQSKQALAQSM 1133


>gi|326434134|gb|EGD79704.1| hypothetical protein PTSG_10689 [Salpingoeca sp. ATCC 50818]
          Length = 1641

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 33/223 (14%)

Query: 3    QYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
             Y  F       ++    + AF+         ++ N            +           
Sbjct: 952  LYEHFLASRDVGEILRGELTAFHGIDL---LRKICNHPDLAPSLADPPDYSDPSVPLPWE 1008

Query: 53   -DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K+  L  ++         +++       L  L+                    +   
Sbjct: 1009 RSGKMIVLRQLLRIWFQKQHRVLLFCQTRQMLNMLESFIKYEHYTYLRLDGTVSVKQRQP 1068

Query: 100  TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ +N+  ++ +      + G GLNL  G + ++ F   W+       ++     R  +
Sbjct: 1069 LIRYFNDNPEVFIFILTTRTGGLGLNLT-GADRVIIFDPDWNPS-----VDVQAKERAWR 1122

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G ++ V +Y L+   TI+E +  R   K  +   ++   K+ 
Sbjct: 1123 IGQQKPVTIYRLLTAGTIEEKIYHRQVFKQLLTFKVMKDPKQR 1165


>gi|331218680|ref|XP_003322017.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309301007|gb|EFP77598.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1764

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
            +   K+  L+ ++++       +++ +     +  +++                    + 
Sbjct: 1424 LDSGKLARLDSLLQELKTGGHRVLIYFQMTRMIDLMEEYLSFRHYRYLRLDGSSTISERR 1483

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +   N  +I +      + G G+NL    + ++F+   W+    Q       + R  
Sbjct: 1484 DMVMDWQNRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDCDWNPSNDQ-----QAMDRAH 1537

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G KR V VY LI   TIDE +L+  RTK T+QD ++ +
Sbjct: 1538 RLGQKRQVTVYRLITTGTIDERILKLARTKKTVQDAVVGS 1577


>gi|281211032|gb|EFA85198.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1376

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 27/201 (13%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEVII--EKANAAPI 71
              N         ++ N      ++   K+            K+K ++ I+   +     +
Sbjct: 873  KKNLLYAIDILKKICNHPDILHKDDDDKDKPDDYGNVERSSKLKVVQEILPMWQQQGHKV 932

Query: 72   IVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI-PLLFAHPASCG 120
            ++       L  +++         +              ++E+N   I  +        G
Sbjct: 933  LLFCQTRQMLDIVEEFIKNSNYQYRRMDGTTSIKVRQTLVEEFNNDPILFIFLLTTKVGG 992

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL  G N ++ F   W+        +     R  + G K+ V +Y L+   TI+E +
Sbjct: 993  LGINLT-GANRVILFDPDWNPST-----DIQARERVYRIGQKKTVTIYRLMTTGTIEEKI 1046

Query: 181  LQRLRTKSTIQDLLLNALKKE 201
              R   K  + + +L   +++
Sbjct: 1047 YHRQIYKQFLSNKILKDPRQK 1067


>gi|281209956|gb|EFA84124.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1905

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 38/225 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y          +        N+ +      QL N       + + K            
Sbjct: 1123 KLYRAVLDNN--GVDSIIAGKQNALTTMTTLKQLCNYPSLIKSDDYSKYFTDSNDTTTPT 1180

Query: 53   ------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                    K++ +E ++          ++  ++   L                       
Sbjct: 1181 DFDASQSGKMEFVEQLLITLKSLGDRAVLVSNYTQTLDVFELLLKKLSIQSYRIDGQVKA 1240

Query: 95   DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    + ++N+       +      + G GLNL  G N +V +   W+       I+  
Sbjct: 1241 TERQDRVDKFNDPSNKTHTVFLLSSKAGGVGLNL-IGANHIVLYDPDWNPA-----IDIQ 1294

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  + V +Y L+   TI+E + QR   K ++ + +++
Sbjct: 1295 AMERVWREGQTKPVSIYRLLTAGTIEEKIHQRQIIKESLSNSVVD 1339


>gi|292559006|gb|ADE32007.1| SWIM domain-containing protein [Streptococcus suis GZ1]
          Length = 1037

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + +         I        S   +  Q+ +    + EE   +      +K L + 
Sbjct: 822  QQMRTQ-IAGADDAQINRSKIEILSGITRLRQICDTPSLFMEEFSGESGKLNSLKELLLQ 880

Query: 63   IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +++     +++   F + L                       ++     Q +N G     
Sbjct: 881  LKEGEH-RVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAF 939

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+       +E   ++R  + G    V  Y LI 
Sbjct: 940  LISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQTEKVECYRLIT 993

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +    K  +   +L+  +  
Sbjct: 994  RGTIEEKIQELQENKKNLVKTVLDGNESR 1022


>gi|170726566|ref|YP_001760592.1| non-specific serine/threonine protein kinase [Shewanella woodyi ATCC
            51908]
 gi|169811913|gb|ACA86497.1| Non-specific serine/threonine protein kinase [Shewanella woodyi ATCC
            51908]
          Length = 1110

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 71/248 (28%), Gaps = 55/248 (22%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------------- 42
             + ++     L G        ++  +K  Q+                             
Sbjct: 855  EELRK--AVSLSGMKRNRLAISNALLKLRQVCCHPDLLKITQIADRTDKEGQRVEHLVAN 912

Query: 43   ---------------DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ 85
                                    H  K+  L   +     +   I++   F S L  + 
Sbjct: 913  SSMNVRQKLVAKMENQSPNSTGVTHSGKLNWLADKLPGMLEDGRRILIFSSFTSMLTLIS 972

Query: 86   --------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                   +  +   ++P+      + G GLNL    ++++    
Sbjct: 973  ELLESLSIPHVELTGKSRDRANLVNRFQNCEVPVFLISLKAGGAGLNLTA-ADVVIHTDP 1031

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            WW+    Q         R  + G  ++VFVY LI ++T++E + +   +K  +   + ++
Sbjct: 1032 WWNPAAEQ-----QASDRAYRIGQDKSVFVYKLICKDTVEERIQRLQESKYNLAQSIYDS 1086

Query: 198  LKKETIHV 205
              +    +
Sbjct: 1087 ETQHLTEM 1094


>gi|146319376|ref|YP_001199088.1| SNF2 family DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321581|ref|YP_001201292.1| SNF2 family DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|145690182|gb|ABP90688.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus suis
            05ZYH33]
 gi|145692387|gb|ABP92892.1| Superfamily II DNA/RNA helicase, SNF2 family [Streptococcus suis
            98HAH33]
          Length = 1037

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 20/209 (9%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             + + +         I        S   +  Q+ +    + EE   +      +K L + 
Sbjct: 822  QQMRTQ-IAGADDAQINRSKIEILSGITRLRQICDTPSLFMEEFSGESGKLNSLKELLLQ 880

Query: 63   IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +++     +++   F + L                       ++     Q +N G     
Sbjct: 881  LKEGEH-RVLIFSQFRNMLEKIEEQLIEIGMTSYTLTGSTPANQRQEMTQAFNAGSRDAF 939

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++   LWW+       +E   ++R  + G    V  Y LI 
Sbjct: 940  LISLKAGGVGLNLT-GADTVILVDLWWNPA-----VEAQAISRAHRMGQTEKVECYRLIT 993

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + TI+E + +    K  +   +L+  +  
Sbjct: 994  RGTIEEKIQELQENKKNLVKTVLDGNESR 1022


>gi|211828096|gb|AAH51825.2| SMARCA1 protein [Homo sapiens]
          Length = 965

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 350 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 409

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 410 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 469

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 470 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 524

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 525 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 576


>gi|322419839|ref|YP_004199062.1| SNF2-like protein [Geobacter sp. M18]
 gi|320126226|gb|ADW13786.1| SNF2-related protein [Geobacter sp. M18]
          Length = 1124

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 25   SASKTVKCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            + +  +K  Q+     +   +        +  +  L+ +  +     ++V   F S L  
Sbjct: 929  ALTAILKLRQICLCSRLILPDATDRSPKIEFLVDQLQELFAE--GHSVLVFSQFTSFLDI 986

Query: 84   LQKAFPQG----------RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNIL 132
            +Q+   Q             + +    +Q + +   P +      + G GLNL    + +
Sbjct: 987  VQQGLAQHGITSSRLDGTTPVGRRKELVQNFQDSVEPGVFLLSLKAGGRGLNLTR-ASYV 1045

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 WW+       +E     R  + G KR V +  L+ +++I+E +++  + K  +  
Sbjct: 1046 FHLDPWWNPA-----VESQASDRAHRIGQKRQVTITRLLMRHSIEEKMMELKKRKLKLYR 1100

Query: 193  LLLNALKKET 202
             LL   + + 
Sbjct: 1101 ALLEDAEHQG 1110


>gi|119964500|ref|YP_949262.1| helicase/SNF2 family domain-containing protein [Arthrobacter
            aurescens TC1]
 gi|119951359|gb|ABM10270.1| putative helicase/SNF2 family domain protein [Arthrobacter aurescens
            TC1]
          Length = 1151

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L    N   F          QL+  A   D       V   K+ 
Sbjct: 931  KVYQTHLQRERQKILGLIDDVNKNRFTIFQSLTLLRQLSLDASLVD--SSLSGVRSSKLD 988

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +E   +     ++   F   L ++++              +       + E+  G
Sbjct: 989  VLFEQLEDLISEGHRALIFSQFTGFLGKVRERLDAEGVEYCYLDGSTRNRGDVVSEFKNG 1048

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    + +     WW+        E   V R  + G  R V V
Sbjct: 1049 AAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPAS-----EAQAVDRTHRIGQARNVMV 1102

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E V+     KS +   ++  
Sbjct: 1103 YRLVAKDTIEEKVMALKAKKSQLFADVMEG 1132


>gi|256818868|ref|YP_003140147.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           ochracea DSM 7271]
 gi|256580451|gb|ACU91586.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           ochracea DSM 7271]
          Length = 950

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y   +   R     +  E I  FN+ +  ++  +++      D+E        E++  
Sbjct: 733 KWYETEKSKVRNQLLQIN-EPITEFNTLNMLMRLRKISLHPKLVDKESKIASGKYEEVIN 791

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG 107
               + +++    ++   F S LA  ++   +             + ++        N  
Sbjct: 792 YMEELLQSS-RKALIFSSFVSHLALYEEWCNKKGIKYAKLTGETPSFERKNQVEMFQNNP 850

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I   F    +   GLNL    + ++    WW+        E+  + R  +   +  V V
Sbjct: 851 SISFFFISLKAGEVGLNLTQ-ASYVLLLDPWWNP-----FSEKQAIGRAHRIEQQNKVNV 904

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++++TI+E +++  ++K+ + + +++ 
Sbjct: 905 IRFVSKDTIEEKIIKLQKSKTELSENIIDE 934


>gi|317127485|ref|YP_004093767.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472433|gb|ADU29036.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
          Length = 1093

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 21/194 (10%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYH 76
                    +   +  Q+      +      +     K++ L   +E+A  +   +++   
Sbjct: 893  QENRMKILAGLTRLRQICCHPALFMTNYKGQ---SGKMERLFEYLEEAIASGRRVVLFSQ 949

Query: 77   FNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            F   L+                       +      ++N G+  L        G      
Sbjct: 950  FTQMLSIIQDRLKGYGWQYHYLDGSTPSKERVELANQFNNGEKELFLVSLK-AGGTGLNL 1008

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             GG+ ++ F  WW+       +E     R  + G K+ V V  LI   TI+E + +    
Sbjct: 1009 TGGDTVILFDSWWNPA-----VEEQAADRVYRFGQKKVVQVTKLITTGTIEEKIHKLQGQ 1063

Query: 187  KSTIQDLLLNALKK 200
            K  + D ++   +K
Sbjct: 1064 KRELLDKVIQPGEK 1077


>gi|304406559|ref|ZP_07388215.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344617|gb|EFM10455.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 1044

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 73/251 (29%), Gaps = 54/251 (21%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVY------------------- 41
             Y +    L   ++            S   +  QL +  +                    
Sbjct: 783  LYDQTVNALMDKMKMLEGIERKGAILSALTQLKQLCDHPMLLTKEAMPELPAPASGSAAP 842

Query: 42   --------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----- 86
                      E          K++ L  ++++        ++   +      LQ+     
Sbjct: 843  PAIEDNPGMSEAAEMVISRSSKLERLLAMVKELREEGDRCLIFTQYIGMGNMLQQVLQNQ 902

Query: 87   ------AFPQGRTLDKDPCTIQEWN------EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                        +       I+++       + +  +      + G GLNL    N +  
Sbjct: 903  LQEQVLYLNGSTSKTARDRMIEQFQSQTLPADEQPNVFILSIKAGGVGLNLTA-ANHVFH 961

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F  WW+       +E     R  + G  R V V+  IA  T++E + + L +K  + D +
Sbjct: 962  FDRWWNPA-----VENQATDRAYRMGQTRDVQVHKFIALGTLEEKIDEMLESKQRLSDDV 1016

Query: 195  LNALKKETIHV 205
            + + +     +
Sbjct: 1017 ITSSEGWITEL 1027


>gi|255726894|ref|XP_002548373.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134297|gb|EER33852.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1043

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEK 55
           + Y KF +    DL        N         ++ N       +   K+          K
Sbjct: 568 ELYEKFLQS--EDLDSILKGKRNMLMGIDILRKICNHPDLVYRDAMMKKKSYGDPSRSGK 625

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKD 97
           ++ L+ ++   ++     ++       L  L+K                       + + 
Sbjct: 626 MQVLKNLLQIWQSEDHKTLLFCQTRQMLDILEKFVANLPLLNGGEFNYLRMDGSTPISRR 685

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N +  + +        G G+NL  G + ++ +   W+        +     R 
Sbjct: 686 QMLVDKFNRDPNMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQARERA 739

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K+ + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 740 WRLGQKKDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 784


>gi|259149765|emb|CAY86569.1| Snf2p [Saccharomyces cerevisiae EC1118]
          Length = 1706

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1025 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 1084

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1085 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1144

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1145 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1198

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1199 RAHRIGQKNEVRILRLITTNSVEEVILERAHKKLDIDGKVIQAGK 1243


>gi|302916021|ref|XP_003051821.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
 gi|256732760|gb|EEU46108.1| chromatin remodeling complex SWI/SNF, component SWI2 and related
            ATPase [Nectria haematococca mpVI 77-13-4]
          Length = 1427

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 80/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +          D +G    A   ++  ++  +L N    +D  ++           
Sbjct: 808  KLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDVVENVMNPLSISNDL 867

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K       +++ +   + +  ++      R             +
Sbjct: 868  LWRTAGKFELLDRILPKYQASGHRVLMFFQMTAIMDIMEDYLRYKRVEYLRLDGTTKSDE 927

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 928  RSDLLREFNAPDSKYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 981

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 982  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1026


>gi|159472859|ref|XP_001694562.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276786|gb|EDP02557.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 856

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 70/194 (36%), Gaps = 29/194 (14%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEV---------HDEKIKALEVIIEKAN--AAPII 72
            + +  ++  ++ N    + + +   +             K+  L+ ++ K       ++
Sbjct: 604 KAMNLLMQLRKVCNHPFMFKDAEPQFDGVSAPEELITGSGKMLVLDRLLSKLKARGHRVV 663

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQEWNEGKIPLLF--AHPASCG 120
           +   FN  L  ++          +              I+++N+    +        + G
Sbjct: 664 LFSQFNIMLDIIEDYLVARGHKYRRLDGSTNRIKRMIDIEQFNKPNSDIFIYILCTRAGG 723

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NLQ   +  V F   W+ +      +   + R  + G  R V VY L+++ T+++ +
Sbjct: 724 LGVNLQT-ADTCVLFDSDWNPQ-----WDLQAMARVHRIGQTRPVHVYRLVSEGTVEDRI 777

Query: 181 LQRLRTKSTIQDLL 194
             R   K  +  ++
Sbjct: 778 QARAEGKLYLDQMV 791


>gi|257075448|ref|ZP_05569809.1| helicase [Ferroplasma acidarmanus fer1]
          Length = 1015

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 22/217 (10%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      +   +   + IE  +   S   K  +L +       +   +    EK+  L 
Sbjct: 780 LYEAAVNTMLESVNTKKGIERKSVILSTITKLKRLLDHPSLVSGDLDRRLDRSEKLVRLR 839

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG 107
            ++E+   +    +V   +      +++                  +      ++ + + 
Sbjct: 840 EMLEEAIDSNQKTLVFTQYTDAGKIIKEEMLKKLGEEALYLNGSTPMSLRQNMVERFQDP 899

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL      ++ F  WW+       +E     R  + G  + V 
Sbjct: 900 DGPKIFIISVKAGGAGINLTA-ATNVIHFDRWWNPS-----VEDQATDRAYRIGQMKNVH 953

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           VY  I+  TI+E +   +  KS +++ ++ A  +  I
Sbjct: 954 VYKFISTGTIEEKIDDIIEGKSMLREKIIGASDESWI 990


>gi|310791654|gb|EFQ27181.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1458

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +          D QG    A   ++  ++  +L N    + E ++     +     
Sbjct: 820  KLYKQMVTHNKIVVSDGQGGKAGARGLSNMIMQLRKLCNHPFVFGEVENTMNPLNISNDM 879

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ ++ K       +++ +   + +  ++                   D+
Sbjct: 880  LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDYLRYRNLKYLRLDGTTKSDE 939

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 940  RSDLLREFNAPDSEYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 993

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R R K  +   ++ A +
Sbjct: 994  RAHRIGQKNEVRILRLISSNSVEEKILERARFKLDMDGKVIQAGR 1038


>gi|145295306|ref|YP_001138127.1| hypothetical protein cgR_1246 [Corynebacterium glutamicum R]
 gi|140845226|dbj|BAF54225.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1034

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVEDVQKQLDERQGMSRKGLVLATITRIKQICNHPAHFLGDGSEVTLKGKHRSGKV 858

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
            +AL  +I+        +++   + +    L                 G T       + E
Sbjct: 859  EALMELIDTAVKEERRMLIFTQYAAFGRILAPYLSDRLGTNIPFLHGGVTKPGRDRMVAE 918

Query: 104  WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  E   P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 919  FQSEDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY +I   T++E +   L  K+ +   ++   +     +
Sbjct: 973  KNVDVYKMITVGTMEESIQDILDGKTHLASAIVGEGEGWITEL 1015


>gi|320586275|gb|EFW98954.1| rsc complex subunit [Grosmannia clavigera kw1407]
          Length = 1493

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 81/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            + Y +     + +  D +G  + A   ++  ++  +L N    +DE +            
Sbjct: 840  RLYKEMLTNNKLIVSDGKGGKMGARGLSNVIMQLRKLCNHPFVFDEIETVMNPLSISNDL 899

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + LE ++ K       +++ +   + +  ++                    +
Sbjct: 900  LWRTAGKFELLERVLPKYQATGHRVLMFFQMTAIMDIMEDFLRYRNVQYLRLDGTTKADE 959

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 960  RSDLLREFNAPNSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 1013

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI   +I+E +L+R R K  +   ++ A +
Sbjct: 1014 RAHRIGQKNEVRILRLITSTSIEEKILERARYKLDMDGKVIQAGR 1058


>gi|254519060|ref|ZP_05131116.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226912809|gb|EEH98010.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 1084

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
                       S   K  QL         +         K+ AL  I+++       I+V
Sbjct: 878  DDLKTSKIEILSYITKLRQLCLDPSVLINDYVGT---SGKVDALIEILQQGIEEGHKILV 934

Query: 74   AYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
               F S L            L          +K    + E+NEG   +      + G GL
Sbjct: 935  FSQFTSVLKNIASKLRSEHILFSYLDGSIPSEKRLELVNEFNEGINSVFLISLKAGGTGL 994

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    +I++ F  WW+       +E     R  + G    V V  LIA+N+I+E ++  
Sbjct: 995  NLTS-ADIVIHFDPWWNPA-----VEDQATDRAHRFGQTNIVEVIKLIARNSIEEKIIDL 1048

Query: 184  LRTKSTIQDLLLN 196
               K  + + +++
Sbjct: 1049 QDEKRKLIEKIID 1061


>gi|221501950|gb|EEE27701.1| E1a binding protein P400, putative [Toxoplasma gondii VEG]
          Length = 2924

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--- 96
               K   +    K+  L  ++ K  A+    ++   F+  L         QG T  +   
Sbjct: 2539 FPHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDG 2598

Query: 97   ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      +  +N   +I L  +   + G GLNL  G + ++F+   W+       ++
Sbjct: 2599 STKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPA-----MD 2652

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + R  + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2653 RQAMDRCHRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2699


>gi|237844353|ref|XP_002371474.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211969138|gb|EEB04334.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 2894

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--- 96
               K   +    K+  L  ++ K  A+    ++   F+  L         QG T  +   
Sbjct: 2509 FPHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDG 2568

Query: 97   ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      +  +N   +I L  +   + G GLNL  G + ++F+   W+       ++
Sbjct: 2569 STKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPA-----MD 2622

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + R  + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2623 RQAMDRCHRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2669


>gi|30840950|gb|AAL29689.1| Snf2-related chromatin remodeling factor SRCAP [Toxoplasma gondii]
 gi|221481249|gb|EEE19646.1| hypothetical protein TGGT1_072500 [Toxoplasma gondii GT1]
          Length = 2924

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--- 96
               K   +    K+  L  ++ K  A+    ++   F+  L         QG T  +   
Sbjct: 2539 FPHKQTLQDDCGKLIVLAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDG 2598

Query: 97   ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      +  +N   +I L  +   + G GLNL  G + ++F+   W+       ++
Sbjct: 2599 STKVDQRQRVVTRFNANPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPA-----MD 2652

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + R  + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2653 RQAMDRCHRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2699


>gi|168213595|ref|ZP_02639220.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
 gi|170714879|gb|EDT27061.1| helicase, SNF2/RAD54 family [Clostridium perfringens CPE str. F4969]
          Length = 1084

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 24/204 (11%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            +++   +     IE     S   K  QLA        +   +     K +AL  I+ +  
Sbjct: 868  KKQDAEEFNKSKIE---ILSYITKLRQLALDPSVTINDYMGE---SAKTEALVEILNQGI 921

Query: 66   ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+V   F S L                     +  K    + E+NEG+  +    
Sbjct: 922  EEGHKILVFSQFTSVLKNISSRLKEEKISFSYLDGSVSSKKRINMVNEFNEGENSVFLIS 981

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL    +I++ F  WW+       +E     R  + G K  V V  LIA+ T
Sbjct: 982  LKAGGTGLNLTS-ADIVIHFDPWWNPA-----VENQATDRAHRMGQKNVVEVIKLIAKGT 1035

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            I+E V+     K  +   ++   +
Sbjct: 1036 IEEKVVALQEEKKELISKIIEEGE 1059


>gi|147765952|emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
               L    +E       NS        ++ N     + E  ++           K+K +
Sbjct: 709 YRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQNPDYGNPERSGKMKVV 768

Query: 60  EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
             ++   K     +++       L  L+     G  + +              I E+N+ 
Sbjct: 769 AHVLKGWKEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDS 828

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 829 DDVFIFILTTKVGGLGTNLT-GANRVIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 882

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY LI + TI+E V QR   K  + + +L   +++
Sbjct: 883 VYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQK 917


>gi|255528070|ref|ZP_05394903.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296186302|ref|ZP_06854706.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|255508235|gb|EET84642.1| Non-specific serine/threonine protein kinase [Clostridium
            carboxidivorans P7]
 gi|296049103|gb|EFG88533.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1081

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +       ++ +              +   K  QL        ++ + +     K
Sbjct: 855  KIYKTYANYAMELIKKKVKDFEFQNSKIEILAYITKLRQLCLDPRVIIKDYNGE---SAK 911

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            I+AL  ++ K+      I+V   F S L  + +   +               K    + +
Sbjct: 912  IEALVELLSKSIGQGHRILVFSQFTSVLKNIGRRINKEDICFSYLDGSIPSEKRINLVND 971

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+G+  +      + G GLNL    ++++ F  WW+       +E     R  + G K+
Sbjct: 972  FNQGENSVFLISLKAGGTGLNLTS-ADVVIHFDPWWNPA-----VEEQATDRAHRIGQKK 1025

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  ++A+ TI+E ++     K  +   L+ 
Sbjct: 1026 VVEVIKIVAKGTIEEKIISLQEEKKKLIGSLIE 1058


>gi|19552388|ref|NP_600390.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390052|ref|YP_225454.1| SNF2 family DNA/RNA helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323931|dbj|BAB98557.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
            glutamicum ATCC 13032]
 gi|41325388|emb|CAF19868.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
            glutamicum ATCC 13032]
          Length = 1034

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVH----DEKI 56
             Y     ++   L      +          +  Q+ N   ++  +     +       K+
Sbjct: 799  LYKALVEDVQKQLDERQGMSRKGLVLATITRIKQICNHPAHFLGDGSEVTLKGKHRSGKV 858

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQE 103
            +AL  +I+        +++   + +    L                 G T       + E
Sbjct: 859  EALMELIDTAVKEERRMLIFTQYAAFGRILAPYLSDRLGTNIPFLHGGVTKPGRDRMVAE 918

Query: 104  WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  E   P +     + G GLNL    +I+V    WW+       +E     R  + G +
Sbjct: 919  FQSEDGPPAMILSLKAGGTGLNLTA-ASIVVHMDRWWNPA-----VENQATDRAFRIGQR 972

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V VY +I   T++E +   L  K+ +   ++   +     +
Sbjct: 973  KNVDVYKMITVGTMEESIQDILDGKTHLASAIVGEGEGWITEL 1015


>gi|297674406|ref|XP_002815220.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like,
           partial [Pongo abelii]
          Length = 816

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|256073356|ref|XP_002572997.1| hypothetical protein [Schistosoma mansoni]
 gi|238658166|emb|CAZ29229.1| expressed protein [Schistosoma mansoni]
          Length = 3580

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 41/232 (17%)

Query: 2    KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L +G +  A N  +  ++  +  N        +              
Sbjct: 1420 KYYRAIMERNFSFLCKGSSTNAPNLMNIMMELRKCCNHPFLIKGAEDAILSEFQANDNTL 1479

Query: 53   -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  +  ++ K  A+   +++       L  L+          + 
Sbjct: 1480 SEDDLTFRTMVYASGKLVLIHKLLPKLRADGHKVLIFSQMIRVLDILEDYLVHQGFQFER 1539

Query: 98   ----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                         I  ++ +    +      + G G+NL    ++++ +   W+ +    
Sbjct: 1540 IDGRIHGPLRQEAIDRFSIDPDKFVFLLCTKAGGLGINLTA-ADVVIIYDSDWNPQN--- 1595

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +     R  + G ++ V VY LI +NT +  +  R   K  +   +L ++
Sbjct: 1596 --DLQAQARCHRIGQQKMVKVYRLITRNTYEREMFDRASLKLGLDRAVLQSM 1645


>gi|149248412|ref|XP_001528593.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448547|gb|EDK42935.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1926

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 78/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGEN-----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
            + Y +  +                   N+ ++ ++  ++ N    Y++ +++        
Sbjct: 1180 RLYQQMLKYNVLYSGDPQNPDVAKPIKNANNQIMQLKKICNHPFVYEDVENFINPTSENN 1239

Query: 54   -------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTL 94
                    K + L+ ++ K       +++ +     +  +                G   
Sbjct: 1240 DLIWRVAGKFELLDKVLPKFKQTGHKVLIFFQMTQIMDIMEDFLRLRNLKYMRLDGGTKA 1299

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1300 DDRTELLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1353

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1354 QDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1400


>gi|320581583|gb|EFW95803.1| DNA dependent ATPase [Pichia angusta DL-1]
          Length = 1003

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHD 53
           K Y  F      D+        N+        ++ N                    E   
Sbjct: 538 KLYEDFLNS--EDINKILRGKRNALFGIDVLRKICNHPDLVDLKLRKKHQRTAEQLEARA 595

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------------KAFPQGRTLD 95
            K++ +  ++    +     ++       L  LQ                        + 
Sbjct: 596 GKLQVVHALLDVWFSEGRKTLIFTQTRQMLDILQDFMEALNYETESKFSFMRMDGTTPIS 655

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + ++N      +        G G+NL  G + ++ +   W+        +     
Sbjct: 656 QRQSMVDQFNTNPMYNVFLLTTRVGGLGVNLT-GASRVIIYDPDWNPST-----DVQARE 709

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G K+ V +Y L+   +I+E +  R   K  + + +L   K++
Sbjct: 710 RAWRLGQKKDVVIYRLMMAGSIEEKIYHRQIFKQLLTNKILKDPKQK 756


>gi|172036268|ref|YP_001802769.1| hypothetical protein cce_1353 [Cyanothece sp. ATCC 51142]
 gi|171697722|gb|ACB50703.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 1046

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 24/217 (11%)

Query: 2    KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKI 56
            + Y +       +++ +          S  +K  Q+ N   ++ ++K+ K   +      
Sbjct: 811  QLYQELVDNSLMEIEEKTGIQRKGLILSLLLKLKQICNHPDHFLKKKNLKKAEQSGKLLR 870

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +          ++   F+              A+            +    I  + 
Sbjct: 871  LEEMLEELIQEGDHALIFTQFSEWGKLLKPYLEKKFAQEVLFLYGATRRIQRQEMIDRFQ 930

Query: 106  EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 931  HDPNGPRIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRLGQKR 984

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V+  +   T++E + + L +K  + +  +++ ++
Sbjct: 985  NVQVHKFVCTGTLEERINEMLESKQKLAEQTVDSGEQ 1021


>gi|156064177|ref|XP_001598010.1| hypothetical protein SS1G_00096 [Sclerotinia sclerotiorum 1980]
 gi|154690958|gb|EDN90696.1| hypothetical protein SS1G_00096 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1103

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 27/191 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEV-------HDEKIKALEVII--EKANAAPIIVAYHFNSDLA 82
             ++ N     D+    K            K++ ++ ++   K      ++       L 
Sbjct: 728 LRKICNHPDLLDKRLKTKPNYKWGNGNKSGKMQVVKALLQMWKGYGHKTLLFSQGVQMLD 787

Query: 83  RLQKA-----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
            L++               G  +      + ++N +  + +        G G+NL  G N
Sbjct: 788 ILEEFVKKLGGFNYLRMDGGTAIKDRQTLVDQFNNDPNMHVFLLTTKVGGLGVNLT-GAN 846

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ F   W+        +     R  + G K+ V +Y L+   TI+E +  R   K  +
Sbjct: 847 RVIIFDPDWNPST-----DVQARERAWRLGQKKEVTIYRLMTAGTIEEKIYHRQIFKQFL 901

Query: 191 QDLLLNALKKE 201
            + +L   K+ 
Sbjct: 902 TNKILKDPKQR 912


>gi|73977790|ref|XP_867156.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 6 [Canis
           familiaris]
          Length = 1056

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|261404317|ref|YP_003240558.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261280780|gb|ACX62751.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 986

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 40/237 (16%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            Y +    L   +Q            +   +  QL +      +E   +           
Sbjct: 740 LYDQTVNSLLERMQKLEGIERKGAILAALTQFKQLCDHPALLTKEPLPELPGGGGLLDTE 799

Query: 52  ----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTL 94
                  K++ L  ++++        ++   +      +++   Q               
Sbjct: 800 AVVNRSAKLERLLSMVKELRDEGERCLIFTQYIGMGEMMRQVLHQELGEPVLYLNGSTPK 859

Query: 95  DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 I+++    +P      ++     + G GLNL    N +  F  WW+       +
Sbjct: 860 RTRDRMIEQFQSQTLPPEEQPNVMILSIKAGGVGLNLTA-ANHVFHFDRWWNPA-----V 913

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E     R  + G  + V VY  I+  T++E + + L +K  + D ++ + +     +
Sbjct: 914 ENQATDRAYRMGQTKDVQVYKFISMGTLEERIDEMLESKQQLSDQVIASSEGWITEL 970


>gi|308800854|ref|XP_003075208.1| Cockayne syndrome group B (ISS) [Ostreococcus tauri]
 gi|116061762|emb|CAL52480.1| Cockayne syndrome group B (ISS) [Ostreococcus tauri]
          Length = 1134

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 30/221 (13%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
           + Y          ++   + EA           ++ N     +                 
Sbjct: 601 EAYRAYLASREVEEILDGSREA---LGGIDVLRKIVNHPDLLERRTQAASEEYGDASRSG 657

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQ 102
           K++    ++   +      +V       L  L+ A  +     +              I 
Sbjct: 658 KLQVTLKVLSLWREQGHRCLVFSQTQQMLDILEAAVARAGYSYRRMDGNTSIGMRMSLID 717

Query: 103 EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N+    I +        G G+NL  G N ++ F   W+        +     R  + G
Sbjct: 718 EFNDNDKGIFVFLLTTKVGGLGVNLT-GANRVMLFDPDWNPST-----DAQARERAWRIG 771

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            ++ V VY LI   TI+E V  R   K  +   +L   K+ 
Sbjct: 772 QQKEVTVYRLITAGTIEEKVYHRQIYKEFLTSKVLKDPKQR 812


>gi|293354700|ref|XP_002728549.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Rattus
           norvegicus]
          Length = 1094

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 256 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 315

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 316 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 375

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 376 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 430

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 431 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 482


>gi|225438089|ref|XP_002272543.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1227

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 30/215 (13%)

Query: 11  LYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKAL 59
               L    +E       NS        ++ N     + E  ++           K+K +
Sbjct: 687 YRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQNPDYGNPERSGKMKVV 746

Query: 60  EVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP----------CTIQEWNE- 106
             ++   K     +++       L  L+     G  + +              I E+N+ 
Sbjct: 747 AHVLKGWKEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDS 806

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +        G G NL  G N ++ +   W+              R  + G  R V 
Sbjct: 807 DDVFIFILTTKVGGLGTNLT-GANRVIIYDPDWNPSTDM-----QARERAWRIGQTRDVT 860

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           VY LI + TI+E V QR   K  + + +L   +++
Sbjct: 861 VYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQK 895


>gi|145352136|ref|XP_001420413.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580647|gb|ABO98706.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1769

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 81/253 (32%), Gaps = 61/253 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-----------NSASKTVKCLQLANGAVYYDEEKHWK- 49
            K Y  F+     + + + + A            +  +      +L +       +   K 
Sbjct: 1451 KMYDAFES---SEAKDQAVSAIEGGGGAEGAAQHVFTTLQYLRKLCSHPKLVVSDGASKK 1507

Query: 50   ---EVHDEKIKALEVIIEKAN-----------------------AAPIIVAYHFNSDLAR 83
               E+   K  AL+ I+                              ++V     S L  
Sbjct: 1508 FNPEMRSPKFDALKQILIDCGIGVDLEEEKSNGDEGKPNPASGAGHRVLVFSQLKSLLDL 1567

Query: 84   LQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            ++                       +    ++++N +  I +L       G GLNL    
Sbjct: 1568 VENELFTTQMRDVSWLRLDGSIPPSQRFDVVRKFNADPSIDVLLLTTHVGGLGLNLTS-A 1626

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +VF    W+ ++     +   + R  + G ++ V VY ++ + T++E ++   R K  
Sbjct: 1627 DTVVFLEHDWNPQK-----DLQAMDRAHRLGQRKTVNVYRILTRGTLEEKIMSLQRFKLD 1681

Query: 190  IQDLLLNALKKET 202
            + + ++NA     
Sbjct: 1682 VANAVVNADNASM 1694


>gi|126272865|ref|XP_001366076.1| PREDICTED: similar to excision repair protein [Monodelphis
           domestica]
          Length = 1492

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           K Y  F   +E+Y  L GE        S  V   ++ N    +       +         
Sbjct: 768 KVYQNFIDSKEVYRILNGE----MQVFSGLVALRKICNHPDLFSGGPKIIKGIPDDELEE 823

Query: 51  -------VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQG 91
                      K+  +E ++         +++       L  L+                
Sbjct: 824 ADQFGYWKRSGKMIVVESLLKIWHKQGHRVLLFSQSRQMLHLLEVFLRARDYSYLKMDGT 883

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I  +N +  I +        G G+NL  G N ++ +   W+        + 
Sbjct: 884 TTIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DT 937

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 938 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRILKDPKQR 988


>gi|308176367|ref|YP_003915773.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
 gi|307743830|emb|CBT74802.1| putative ATP-dependent helicase [Arthrobacter arilaitensis Re117]
          Length = 1115

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 14/198 (7%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            ++++   ++  +   F           LA      D E         +    ++      
Sbjct: 906  RQKILHLVEDLDRNRFTIFQSLTHLRMLALEPSLVDPELSDVTGSKLEALFDQLDDVVGE 965

Query: 68   AAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                ++   F S L         R  K              I+++ EG+ PL      + 
Sbjct: 966  GHRALIFSQFTSYLKVLADKLTERGVKFVYLDGNTRNRAKVIEQFKEGEAPLFLISLKAG 1025

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    +       WW+       +E   + R  + G  R V VY +I+Q TI+E 
Sbjct: 1026 GFGLNLTE-ADYCFLLDPWWNPA-----VEAQAIDRTHRIGQTRQVMVYRMISQGTIEEK 1079

Query: 180  VLQRLRTKSTIQDLLLNA 197
            V+    +K  +   +++ 
Sbjct: 1080 VVALQESKRKLISTVMDE 1097


>gi|226307557|ref|YP_002767517.1| helicase [Rhodococcus erythropolis PR4]
 gi|226186674|dbj|BAH34778.1| putative helicase [Rhodococcus erythropolis PR4]
          Length = 1060

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 22/209 (10%)

Query: 3    QYH---KFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y    + +R+    L  + +   F          QL+      DEE     V   K+ A
Sbjct: 842  IYDTHLQRERQKILGLLDDVDKNRFTILQSQTVLRQLSLDVSLVDEESG--PVPSAKVDA 899

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWNEGK 108
            L   ++         ++   F   L  ++               +       ++E+  G 
Sbjct: 900  LVEQLDDVIAGGHRALIFSQFTGFLGSVRKRLEAEKIPYSYLDGSTRNRGEVLEEFKSGV 959

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             P+      + G GLNL    +       WW+        E   V R  + G  R V VY
Sbjct: 960  APVFLISLKAGGFGLNLTE-ADYCFILDPWWNPAA-----EAQAVDRTHRIGQTRNVMVY 1013

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             LIA++TI+E V+     KS +   +++A
Sbjct: 1014 RLIAKDTIEEKVMALKAKKSALFSNVMDA 1042


>gi|301783501|ref|XP_002927161.1| PREDICTED: DNA excision repair protein ERCC-6-like [Ailuropoda
           melanoleuca]
          Length = 1481

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           + Y  F   +E+Y  L G+        S  V   ++ N    +               +E
Sbjct: 765 RVYQNFIDSKEVYRILNGD----MQIFSGLVALRKICNHPDLFSGGPKNPKDIPDGELEE 820

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 821 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTT 880

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +      I  +N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 881 AIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DTQ 934

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 935 ARERAWRIGQKKQVTVYRLLTAGTIEEKIFHRQIFKQFLTNRVLKDPKQR 984


>gi|57096815|ref|XP_532676.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 1 [Canis
           familiaris]
          Length = 1052

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|6324864|ref|NP_014933.1| Snf2p [Saccharomyces cerevisiae S288c]
 gi|134589|sp|P22082|SNF2_YEAST RecName: Full=Transcription regulatory protein SNF2; AltName:
            Full=ATP-dependent helicase SNF2; AltName:
            Full=Regulatory protein GAM1; AltName: Full=Regulatory
            protein SWI2; AltName: Full=SWI/SNF complex component
            SNF2; AltName: Full=Transcription factor TYE3
 gi|4500|emb|CAA40969.1| GAM1/SNF2 protein [Saccharomyces cerevisiae]
 gi|172632|gb|AAA35059.1| SNF2protein [Saccharomyces cerevisiae]
 gi|806532|dbj|BAA14423.1| RIC1 [Saccharomyces cerevisiae]
 gi|1279713|emb|CAA61793.1| regulatory protein gam1 [Saccharomyces cerevisiae]
 gi|1420644|emb|CAA99517.1| SNF2 [Saccharomyces cerevisiae]
 gi|285815161|tpg|DAA11054.1| TPA: Snf2p [Saccharomyces cerevisiae S288c]
          Length = 1703

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1022 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 1081

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1082 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1141

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1142 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1195

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1196 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1240


>gi|325116597|emb|CBZ52150.1| putative SNF2 family N-terminal domain-containing protein [Neospora
            caninum Liverpool]
          Length = 2973

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--- 96
               K   +    K+  L  ++ K  A+    ++   F+  L         QG T  +   
Sbjct: 2588 FPHKQTLQDDCGKLIILAELLTKLRADGHRCLLFTQFSKMLDVLESWINHQGFTYVRLDG 2647

Query: 97   ------DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      +  +N   +I L  +   + G GLNL  G + ++F+   W+       ++
Sbjct: 2648 STKVDQRQRVVTRFNASPRIFLFISSTRAGGVGLNLT-GADTVIFYDTDWNPA-----MD 2701

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + R  + G  R V VY L+ +++I+E + ++   K  + +++++
Sbjct: 2702 RQAMDRCHRIGQTRDVHVYRLVTEHSIEENIWRKQLQKRLLDEVVVD 2748


>gi|87307136|ref|ZP_01089281.1| swi/snf family protein [Blastopirellula marina DSM 3645]
 gi|87289876|gb|EAQ81765.1| swi/snf family protein [Blastopirellula marina DSM 3645]
          Length = 589

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 23/205 (11%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y   + E    L+  GE +   +     ++  Q+ N    +D         D+    +
Sbjct: 364 ETYELAENEGIVRLEKMGEELTVQHVFELVLRLKQICN----FDPRTGDSTKMDQLRADM 419

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWN-EGKIP 110
           E ++  A+    IV   +   + ++++         +       K    I+++  +    
Sbjct: 420 EEVV--ASGKKAIVFSQWTQTIEQIRRQLEPFGPLEYHGKIPSKKRDGVIEQFKHDPSKS 477

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     +   GLNLQ+    +  F  WW+       IE   + R  + G K AV +   
Sbjct: 478 VILMSYGAGSVGLNLQF-CEYVFLFDRWWNPA-----IEDQAINRAHRIGAKGAVTISRY 531

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           +A NTI++ + Q L  K  + + L 
Sbjct: 532 LAMNTIEDRIDQVLSEKRELFNTLF 556


>gi|311262519|ref|XP_003129222.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 [Sus scrofa]
          Length = 1052

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|309702946|emb|CBJ02277.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 134

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 85/133 (63%), Positives = 112/133 (84%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           ++VAYH+  DL RL KAFP+GR LD+DP T+++WN GKIP+LFAHPAS GHGLN+Q GGN
Sbjct: 1   MLVAYHWKHDLERLLKAFPRGRHLDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGN 60

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ILVFFS WWDLE++QQ+IERIG TRQ QAG  R VF++++IA +T+DE+V++R  +K T+
Sbjct: 61  ILVFFSHWWDLEQYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMERRNSKRTV 120

Query: 191 QDLLLNALKKETI 203
           QD+LL+A+KK  I
Sbjct: 121 QDILLDAMKKRGI 133


>gi|324998496|ref|ZP_08119608.1| helicase [Pseudonocardia sp. P1]
          Length = 595

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 21/217 (9%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     E +   L   +    +  +   +  Q+         E             L 
Sbjct: 366 ELYTAVLDEAFGRGLGSGSARRGHVLALLTRLKQICVHPALAGAEDLEYSGRSASFDRLT 425

Query: 61  VIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
            ++ +   N    +V   +              L         G +       + E++ G
Sbjct: 426 ELVTEIVDNDEAALVFTQYRTAGDLLVSRLSDRLGMAVPFLHGGLSRPARERLVAEFSGG 485

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+L     + G GL L      ++    WW+       +E     R  + G  R V 
Sbjct: 486 AGPPVLILSLRAAGTGLTLTR-ATHVLHLDRWWNPA-----VEAQASDRAHRIGQTRPVT 539

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V+    + T++EL+ +  R K+ + D  L   +  T+
Sbjct: 540 VHTFTTRGTVEELIAELHRGKAGLADAALGQAEASTV 576


>gi|251778971|ref|ZP_04821891.1| hypothetical ATP-dependent helicase [Clostridium botulinum E1 str.
            'BoNT E Beluga']
 gi|243083286|gb|EES49176.1| hypothetical ATP-dependent helicase [Clostridium botulinum E1 str.
            'BoNT E Beluga']
          Length = 1055

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 25/218 (11%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   L+            +   +  QL        E+    E    KI   
Sbjct: 832  KMYKMYVKDIQDKLKQIDSRNNKIAIFAYLTRLRQLCLDPSIIVEDY---EGGSGKINVA 888

Query: 60   EVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG 107
            + +I+K   N   I++   F S L                        +      E+N  
Sbjct: 889  KELIKKSIKNNHKILLFSQFTSLLNKVCDELKSEQIFYLYLDGSTPSKERIRLAHEFNNN 948

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    ++++ F  WW+       IE     R  + G K  V 
Sbjct: 949  EDIKIFLISLKAGGTGLNLTS-ADMVIHFDPWWNPA-----IEDQATDRAHRIGQKNVVR 1002

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
            V  LI + +I+E +L     K  + + ++   LK++ +
Sbjct: 1003 VIKLITKESIEEKILLLQEDKKALIEDVITGELKEDGL 1040


>gi|255713990|ref|XP_002553277.1| KLTH0D13046p [Lachancea thermotolerans]
 gi|238934657|emb|CAR22839.1| KLTH0D13046p [Lachancea thermotolerans]
          Length = 1540

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD---- 53
            K Y +  +     +   N           ++ ++  ++ N    +++ +           
Sbjct: 945  KLYEQMLKHRRLFIGDINSNKMVGMRGFNNQIMQLKKICNHPFVFEDVEDQINPTRETNA 1004

Query: 54   ------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLD 95
                   K + LE I+ K       I++ +     +  ++                   D
Sbjct: 1005 NIWRVAGKFELLERILPKFKATGHRILIFFQMTQIMDIMEDFLRLSGMKYLRLDGHTKSD 1064

Query: 96   KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N+             + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1065 DRTLLLNLFNDPNSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 1118

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +N+++E++L R   K  I   ++ A K
Sbjct: 1119 DRAHRIGQKNEVRILRLITENSVEEVILDRAHKKLDIDGKVIQAGK 1164


>gi|282890006|ref|ZP_06298540.1| hypothetical protein pah_c009o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281500098|gb|EFB42383.1| hypothetical protein pah_c009o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1234

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 9    RELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDE-EKHWKEVHDEKIKALEVIIE 64
            RE    +  +    I   +  +      Q+ N    + +  + +++    K    + +++
Sbjct: 1013 REKILQVLHDRTIAIPYMHIFALLSSLKQICNHPAAFLKTPEEYQDYSSGKWDLFKELLD 1072

Query: 65   K--ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLF 113
            +   ++  ++V   +   L   +    Q         G T+D+     +   +    +  
Sbjct: 1073 EARESSQKVVVFSQYLGMLDIFELYLQQNGIEYATIRGSTVDRRAPIKRFNQDPNCEIFV 1132

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G++L    ++++ +  WW+        E     R  + G  R V V+ L+  
Sbjct: 1133 GSLRAAGLGIDLTA-ASVVIHYDRWWNAAR-----ENQATDRVHRMGQTRGVQVFKLVTL 1186

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             TI+E + Q +  K  + + ++   +++ +
Sbjct: 1187 GTIEERIDQLISQKGQLLEDVVGVDEQQVL 1216


>gi|151945372|gb|EDN63615.1| transcriptional regulator [Saccharomyces cerevisiae YJM789]
          Length = 1706

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1025 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 1084

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1085 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1144

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1145 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1198

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1199 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|281346214|gb|EFB21798.1| hypothetical protein PANDA_016920 [Ailuropoda melanoleuca]
          Length = 1488

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 75/230 (32%), Gaps = 40/230 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           + Y  F   +E+Y  L G+        S  V   ++ N    +               +E
Sbjct: 772 RVYQNFIDSKEVYRILNGD----MQIFSGLVALRKICNHPDLFSGGPKNPKDIPDGELEE 827

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
           ++        K+  +E ++         +++       L  L+                 
Sbjct: 828 DQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTT 887

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +      I  +N +  I +        G G+NL  G N ++ +   W+        +  
Sbjct: 888 AIASRQPLITRYNEDTSIFVFLLTTRVGGIGVNLT-GANRVIIYDPDWNPST-----DTQ 941

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 942 ARERAWRIGQKKQVTVYRLLTAGTIEEKIFHRQIFKQFLTNRVLKDPKQR 991


>gi|190407590|gb|EDV10857.1| transcription regulatory protein SNF2 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1706

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1025 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 1084

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1085 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1144

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1145 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1198

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1199 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|325126030|gb|ADY85360.1| SNF2-related domain:Helicase, C-terminal:SWIM Zn-finger
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 637

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2   KQYHK----FQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y       + ++  +       E     +   +  ++        E+   +    EK 
Sbjct: 414 RLYDAEIARLKNKVMAEDDEGIKREQIEILAALTRIREICCDPGLLYEDYKGE---SEKR 470

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
            A   +I+        +++   F S L  L++                   +    +  +
Sbjct: 471 LACVDLIKSAIDEGHKVLLFSQFTSMLDLLEESLKAEEIGFLRIDGQTPKARRLTLVNVF 530

Query: 105 N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N  +    +      + G GLNL  G + ++ +  WW++             R  + G +
Sbjct: 531 NHKDSPAKVFLISLKAGGTGLNLT-GADTVIHYDPWWNVAAQ-----NQATDRAHRIGQE 584

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V VY LIA++T++E +L     KS +   +L A
Sbjct: 585 KKVTVYKLIAKDTVEEAILDLQEAKSLLAQGILTA 619


>gi|213410130|ref|XP_002175835.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
 gi|212003882|gb|EEB09542.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Schizosaccharomyces japonicus yFS275]
          Length = 1162

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 33/226 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVHD---- 53
           +K Y + ++     +Q                ++  ++ N    ++E +   +       
Sbjct: 583 LKLYTQMKKHGMLFVQNGTNGKTGIKGLQNTVMQLKKICNHPFVFEEVEKVVDPSGMSFD 642

Query: 54  ------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                  K + L+ I+ K   +   +++ +     +  ++                   D
Sbjct: 643 MLWRVAGKFELLDRILPKLFKSGHRVLMFFQMTQIMNIMEDYLHYRAWKYLRLDGSTKSD 702

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N+      +      + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 703 DRSQLLHLFNDPASIYTIFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQ 756

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V ++ LI + +++E +L R + K  I   ++ A K
Sbjct: 757 DRAHRIGQTKEVRIFRLITEKSVEENILARAQYKLDIDGKVIQAGK 802


>gi|300122947|emb|CBK23954.2| unnamed protein product [Blastocystis hominis]
          Length = 787

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 71/254 (27%), Gaps = 66/254 (25%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           K Y ++ +          I         ++  Q+ N  V++                   
Sbjct: 468 KCYLEYLKSDLVQ--ASLIGRSMPFKAIIRLRQICNHPVFFRLFHTETTVTNPIYRSEET 525

Query: 43  ----------------------------DEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
                                        +   W+E     +    + I K     +++ 
Sbjct: 526 PKDDPSGLSPTSHEVFNDEAGDSEMDIDFDAVDWRESSKMIVMNEVLHIWKKEGHKVLIY 585

Query: 75  YH----------FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
                       +  +             + K    +  +N +  I L        G G+
Sbjct: 586 TQTVSMLTIIMKYVEEQHFSYCMMDGSTPVVKRQALVDLFNSDPTIFLFLLTTRVGGLGI 645

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL  G + ++ F   W+       ++     R  + G +R V +Y LI   TI+E +  R
Sbjct: 646 NL-VGADRVILFDPDWNPS-----VDIQARERCWRIGQQRPVTIYRLITSGTIEEKIYHR 699

Query: 184 LRTKSTIQDLLLNA 197
              K+ + + +L  
Sbjct: 700 QIFKTVLSNRVLGE 713


>gi|228472212|ref|ZP_04056978.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276415|gb|EEK15139.1| Non-specific serine/threonine protein kinase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 946

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 22/210 (10%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y + +   R     +  +     +S +  ++  Q++N  +  D +        E++ +
Sbjct: 732 KWYEQEKSKVRNALLQVAPQGKN-IHSLNMLMRLRQISNHPLLADPKSDIPSGKYEEVVS 790

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEG 107
               +   +A   ++   F S L   Q+   + +              +     +   + 
Sbjct: 791 CLEQLL-LSAQKALIFSSFTSHLEIYQRWCDEQKIKYALLTGATALPDRKVQVERFQKDK 849

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++P  F    +   GLNL    + ++    WW+        ER  + R  + G ++ V V
Sbjct: 850 EVPFFFISLKAGEVGLNLTA-ASYVLLLDPWWNP-----FAERQAIARAHRLGQEQKVNV 903

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++Q+T++E +++  + K  + + ++  
Sbjct: 904 IRFVSQHTLEEKIIRLQQHKRELSEHIIEE 933


>gi|197101878|ref|NP_001127206.1| probable global transcription activator SNF2L1 [Pongo abelii]
 gi|55726189|emb|CAH89868.1| hypothetical protein [Pongo abelii]
          Length = 849

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 204 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 263

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 264 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 323

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 324 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 378

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 379 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 430


>gi|73977782|ref|XP_867119.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 2 [Canis
           familiaris]
          Length = 1046

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 404 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 463

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 464 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 523

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 524 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 578

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 579 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 630


>gi|126658928|ref|ZP_01730070.1| hypothetical protein CY0110_26537 [Cyanothece sp. CCY0110]
 gi|126619726|gb|EAZ90453.1| hypothetical protein CY0110_26537 [Cyanothece sp. CCY0110]
          Length = 1046

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 2    KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKI 56
            + Y +       +++ +          S  +K  Q+ N   ++ ++K  K+         
Sbjct: 811  QLYQELVDNSLTEIEEKTGIQRKGLILSLLLKLKQICNHPDHFLKKKSLKKSEQSGKLLR 870

Query: 57   KALEVIIEKANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWN 105
                +          ++   F+             L +            +    I  + 
Sbjct: 871  LEEMLEELIQEGDHALIFTQFSEWGKLLKPYLEKKLQQEVLFLYGATRRVQRQEMIDRFQ 930

Query: 106  EGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   +      + G GLNL    N +     WW+       +E     R  + G KR
Sbjct: 931  HDPNGPRIFILSLKAGGTGLNLTR-ANHVFHIDRWWNPA-----VENQATDRAFRLGQKR 984

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V V+  +   T++E + + L +K  + +  +++ +K
Sbjct: 985  NVQVHKFVCIGTLEERINEMLESKQKLAEQTVDSGEK 1021


>gi|241959152|ref|XP_002422295.1| ATP-dependent helicase, putative; DNA repair and recombination
           protein rad26 homologue, putative [Candida dubliniensis
           CD36]
 gi|223645640|emb|CAX40300.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1054

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           + Y  F +    DL+       N         ++ N       +   K+          K
Sbjct: 560 ELYESFLQS--EDLESILKGKRNVLMGVDILRKICNHPDLVYRDTLMKKKNYGDPAKSGK 617

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKD 97
           ++ L+ ++   +      ++       L  L+K                       + K 
Sbjct: 618 MQVLKNLLRLWQHENHKTLLFCQTRQMLDILEKFVANLSLINGGDFKYLRMDGSTPISKR 677

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N +  + +        G G+NL  G + ++ +   W+        +     R 
Sbjct: 678 QMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQARERA 731

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 732 WRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 776


>gi|240281984|gb|EER45487.1| chromatin remodeling complex ATPase chain ISW1 [Ajellomyces
           capsulatus H143]
          Length = 1051

 Score =  105 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 449 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 508

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 509 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 568

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 569 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 622

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 623 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 668


>gi|256272521|gb|EEU07500.1| Snf2p [Saccharomyces cerevisiae JAY291]
          Length = 1706

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1025 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 1084

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1085 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1144

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1145 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1198

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1199 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1243


>gi|126331506|ref|XP_001377204.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 [Monodelphis
           domestica]
          Length = 1050

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 408 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 467

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 468 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 527

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 528 DGQTPHDERQDSINAYNEPNSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 582

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 583 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 634


>gi|73977784|ref|XP_867131.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 3 [Canis
           familiaris]
          Length = 1034

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|291408169|ref|XP_002720327.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 2 [Oryctolagus
           cuniculus]
          Length = 1041

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 472 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 531

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 532 DGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 586

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 587 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 638


>gi|301604374|ref|XP_002931866.1| PREDICTED: probable global transcription activator SNF2L1 [Xenopus
           (Silurana) tropicalis]
          Length = 1029

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 385 VKIYLGLGKMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 444

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++   K   + +++       L  L+             
Sbjct: 445 PPYTTDTHLVYNSGKMVVLDKLLPKFKEQGSRVLIFSQMTRVLDILEDYCMWRGYEYCRL 504

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 505 DGQTPHEQREAAIETFNSPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 559

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 560 -VDLQAMDRAHRIGQKKTVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 611


>gi|312079660|ref|XP_003142270.1| transcription activator [Loa loa]
 gi|307762566|gb|EFO21800.1| transcription activator [Loa loa]
          Length = 1062

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFN---------SASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N           +  +   +  N    +      
Sbjct: 396 VKIYVGLSKMQREWYTKILMKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 455

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++    +  L  L+             
Sbjct: 456 PPYTTDQHLVDNSGKMVLLDKLLVKLKEQGSRVLIFSSMSRMLDLLEDYCWWRSYRYCRL 515

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I E+N+      +      + G G+NL    ++++ +   W+ +    
Sbjct: 516 DGQTVHDERQKSIDEFNKPDSDKFIFMLTTRAGGLGINLTA-ADVVIIYDSDWNPQ---- 570

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+  I  NT+DE +++R   K  +  +++   +
Sbjct: 571 -VDLQAMDRAHRIGQKKQVRVFRFITDNTVDERIIERAEMKLHLDSIVIQQGR 622


>gi|291408171|ref|XP_002720328.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 3 [Oryctolagus
           cuniculus]
          Length = 1049

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 420 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 479

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 480 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 539

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 540 DGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVILYDSDWNPQ---- 594

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  +++   +
Sbjct: 595 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 646


>gi|255994014|ref|ZP_05427149.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993682|gb|EEU03771.1| SNF2 domain protein [Eubacterium saphenum ATCC 49989]
          Length = 467

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 14/205 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y KF+R        +   A +  +      + K LQLA GA+Y ++ K +  VHD K+
Sbjct: 260 RAYAKFERGCVLRYLDDTDSASSVMASTAADLSGKLLQLAGGAIYQEDSKDYVTVHDTKL 319

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLF 113
           KAL  ++E  N   II+ Y+F  + ARL  AF   +   +       I +WN GK+ +L 
Sbjct: 320 KALTELVEPLNEN-IIIFYNFLHEKARLCNAFSDFKGEVRVFKSGKDIADWNAGKVNILI 378

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           AHPA+ G+GLNLQ GG  +++F L    E++          R  + G +  VFV+ L+ +
Sbjct: 379 AHPAAMGYGLNLQQGGRRIIWFGLPQSYEQY-----AQANKRLHRQGQQDKVFVHRLVCK 433

Query: 174 NTIDELVLQRLRTKSTIQDLLLNAL 198
            T DE VL  L  K ++Q  LL++L
Sbjct: 434 GTRDEDVLSALAHKDSMQKYLLSSL 458


>gi|255719682|ref|XP_002556121.1| KLTH0H05566p [Lachancea thermotolerans]
 gi|238942087|emb|CAR30259.1| KLTH0H05566p [Lachancea thermotolerans]
          Length = 1106

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 79/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q+  Y  +  ++++A N             +  ++  +  N    +            
Sbjct: 375 AMQKRWYKQILEKDLDAVNGANGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTD 434

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+K L+ ++   K   + +++    +  L  L+                   
Sbjct: 435 EHLVYNSAKLKVLDKLLRKFKEEGSRVLIFSQMSRLLDILEDYCFFRNYEYCRIDGSTAH 494

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +++V +   W+ +      +   
Sbjct: 495 EDRIEAIDEYNAPDSKKFVFLLTTRAGGLGINLTT-ADVVVLYDSDWNPQA-----DLQA 548

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 549 MDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 592


>gi|332025493|gb|EGI65656.1| DNA excision repair protein ERCC-6 [Acromyrmex echinatior]
          Length = 1020

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 59/208 (28%), Gaps = 36/208 (17%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHD-----------------EKIKALEVII--EKA 66
                   ++ N    +   +      D                  K+  +  ++   + 
Sbjct: 532 LIALSALRKICNHPDLFLYTREQDSDEDIDLSDEQIEKFGYYKRAGKMTVVRSLLKIWQK 591

Query: 67  NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
               +++       +               +         +     +  N+    +    
Sbjct: 592 QGHRVLLFTQGRQMMHILESLLQREKYIYLRMDGTTAMSQRQQTIQKFNNDSSYFVFLLT 651

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G G+NL  G N +V +   W+        +     R  + G  + V VY LI   T
Sbjct: 652 TRVGGLGINLT-GANRVVIYDPDWNPAT-----DAQARERAWRIGQNKQVTVYRLITAGT 705

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I+E +  R   K  + + +L+  ++  +
Sbjct: 706 IEEKIYHRQIFKLLLSNKVLDEPRQRQL 733


>gi|329930625|ref|ZP_08284117.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328934720|gb|EGG31215.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 986

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 40/237 (16%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            Y +    L   +Q            +   +  QL +      +E   +           
Sbjct: 740 LYDQTVNSLLERMQKLEGIERKGAILAALTQFKQLCDHPALLTKEPLPELPGGGGLLDTE 799

Query: 52  ----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTL 94
                  K++ L  ++++        ++   +      +++   Q               
Sbjct: 800 AVVNRSAKLERLLSMVKELRDEGERCLIFTQYIGMGEMMRQVLHQELGEPVLYLNGSTPK 859

Query: 95  DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 I+++    +P      ++     + G GLNL    N +  F  WW+       +
Sbjct: 860 GTRDRMIEQFQSRTLPPEEQPNVMILSIKAGGVGLNLTA-ANHVFHFDRWWNPA-----V 913

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           E     R  + G  + V VY  I+  T++E + + L +K  + D ++ + +     +
Sbjct: 914 ENQATDRAYRMGQTKDVQVYKFISMGTLEERIDEMLESKQQLSDQVIASSEGWITEL 970


>gi|317129655|ref|YP_004095937.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474603|gb|ADU31206.1| SNF2-related protein [Bacillus cellulosilyticus DSM 2522]
          Length = 942

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 24/213 (11%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFNSASK-TVKCLQLANGAVYYDEEKHWKEVH--DEKIKA 58
            Y     EL  DL     +E  +   +   +  Q+ N   ++ +E +   +     K   
Sbjct: 716 LYEAVVEELLEDLPSYSMLEKRSRLFQAITQLKQICNHPAHFTKESNIANMKGRSNKWDT 775

Query: 59  LEVIIEKAN--AAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEWN 105
              ++      A   ++   +             +L      F    ++      I  + 
Sbjct: 776 CMSLLAHNQVEAKQTLLFTQYRYIGNLLQKAIAKELNTTVPFFHGQLSMKDRQNMITSFQ 835

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +  P++     + G GLNL    + ++ +  WW+       +E     R  + G KR 
Sbjct: 836 AERRYPVMIISLRAGGFGLNLTN-ASEVIHYDRWWNPA-----VEDQATDRVYRIGQKRD 889

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+  I++ TI++ +   L+ K  +Q  LL +
Sbjct: 890 VTVHTFISEGTIEQKLDNLLQEKKALQQSLLQS 922


>gi|223997284|ref|XP_002288315.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975423|gb|EED93751.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 692

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFN----------SASKTVKCLQLANGAVYY--------DEEKH 47
           K Q++LY  L   +IEA              +  ++  +  N    +        D    
Sbjct: 267 KMQKQLYKKLLLRDIEAITGKNTSSGKTAILNIVMQLRKCCNHPYLFEGVEDRTLDPLGE 326

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS----------DLARLQKAFPQGRTLD 95
               +  K+  ++ ++++     + +++                               +
Sbjct: 327 HLVENCGKLNMVDKLLKRLKERGSRVLIFTQMTRILDILEDYMVMRGYKYCRIDGNTDYE 386

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N              + G G+NLQ   +  + +   W+ +      +    
Sbjct: 387 DRERGIDEFNAPNSEKFCFILSTRAGGLGINLQT-ADTCILYDSDWNPQA-----DLQAQ 440

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V +Y L+++NT++E +++R + K  +  +++   +
Sbjct: 441 DRCHRLGQKKPVSIYRLVSENTVEEKIVERAQQKLKLDAMVVQQGR 486


>gi|188587761|ref|YP_001921450.1| hypothetical ATP-dependent helicase [Clostridium botulinum E3 str.
            Alaska E43]
 gi|188498042|gb|ACD51178.1| hypothetical ATP-dependent helicase [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1050

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 25/218 (11%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   L+            +   +  QL        E+         KI   
Sbjct: 827  KMYKIYVKDIQDKLKQIDSRNNRITIFAYLTRLRQLCLDPSIIVEDYD---GGSGKINVA 883

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
            + +I+K   N   I++   F S L                        +      E+N  
Sbjct: 884  KELIKKSIKNNHKILLFSQFTSVLHKVCDELKGEQISYLYLDGSTPSKERIRLAHEFNNN 943

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    ++++ F  WW+       IE     R  + G K  V 
Sbjct: 944  EDIKIFLISLKAGGTGLNLTS-ADMVIHFDPWWNPA-----IEDQATDRAHRIGQKNVVR 997

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
            V  LI + +I+E +L     K  + + ++   LK++ +
Sbjct: 998  VIKLITKESIEEKILLLQEDKKALIEDVITGELKEDGL 1035


>gi|328772759|gb|EGF82797.1| hypothetical protein BATDEDRAFT_9561 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 912

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 69/219 (31%), Gaps = 27/219 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEK 55
           ++Y KF      +L+G         +      ++ N     +        +        K
Sbjct: 547 REYEKFLSS--KELKGILEGKLRILAGIDVLRKICNHPDLLERNNADFSANYGAVSRSGK 604

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
           +  ++ ++   K     +++       L                     ++ +    +  
Sbjct: 605 MIVVKALLQMWKRQGHRVLLFCQTRQMLDILELFIKNEGYAYLRMDGSTSIQQRSKIVDC 664

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +        G G+NL    N ++ F   W+              R  + G K
Sbjct: 665 YNEDESYFVFLLTTKVGGLGINLTS-ANRVIIFDPDWNPSTDM-----QARERAWRLGQK 718

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++V +Y L+   TI+E +  R   K  + + +L   ++ 
Sbjct: 719 KSVTIYRLMTSGTIEEKIYHRQIFKQFLTNKILKDPRQR 757


>gi|145610651|ref|XP_368232.2| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
 gi|145018030|gb|EDK02309.1| hypothetical protein MGG_01012 [Magnaporthe oryzae 70-15]
          Length = 1111

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + QR  Y  +  ++I+A N             +  ++  +  N    +            
Sbjct: 423 EMQRTWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  KA  + +++    +  L  L+               G   
Sbjct: 483 EHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N+      +      + G G+NL    +I++ F   W+ +      +   
Sbjct: 543 EDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G  + V+VY  +  NTI+E VL+R   K  +  L++   +
Sbjct: 597 MDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQQGR 643


>gi|255718981|ref|XP_002555771.1| KLTH0G17028p [Lachancea thermotolerans]
 gi|238937155|emb|CAR25334.1| KLTH0G17028p [Lachancea thermotolerans]
          Length = 1000

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 75/242 (30%), Gaps = 46/242 (19%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-------------- 48
            Y    +     L  ++ +            +L N                         
Sbjct: 683 LYEHMLKSRDIKLLVKDAKHTQPLKHIGVLKKLCNHPDLLRLPDDIEGSEDLMPEDYQSS 742

Query: 49  ----------KEVHDEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
                     +  H  K   +      I+  +   I++  ++   L  ++K         
Sbjct: 743 TVSKRGRSELQTWHSGKFSILGRFLHKIKTESDDKIVIISNYTQTLDLIEKMCRSSTYPV 802

Query: 92  ------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  T++K    +  +N+ +    +      + G G+NL  G N L+     W+   
Sbjct: 803 VRLDGTMTINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAA 861

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            Q       + R  + G K+  F+Y  I   +I+E + QR   K ++   +++  K++  
Sbjct: 862 DQ-----QALARVWRDGQKKDCFIYRFICTGSIEEKIYQRQSMKMSLSSCVVDE-KEDVE 915

Query: 204 HV 205
            +
Sbjct: 916 RL 917


>gi|124803472|ref|XP_001347729.1| PfSNF2L [Plasmodium falciparum 3D7]
 gi|23495979|gb|AAN35642.1|AE014836_39 PfSNF2L [Plasmodium falciparum 3D7]
          Length = 1426

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    L           +  ++  +  N    +D  +    +          
Sbjct: 567 KLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 626

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   K   + +++       L  +                    D+    I 
Sbjct: 627 KMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRIN 686

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G
Sbjct: 687 QFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIG 740

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K+ V VY  + QN+++E +++R   K  +  L++   K
Sbjct: 741 QKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 779


>gi|303318849|ref|XP_003069424.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109110|gb|EER27279.1| HSA family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 1415

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 793  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 852

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 853  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 912

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 913  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 966

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 967  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1011


>gi|255082205|ref|XP_002508321.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523597|gb|ACO69579.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 776

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 32  CLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK- 86
             QL    G +              K  AL  ++++  +  +  ++   +   L  L+  
Sbjct: 580 LHQLCGEQGHLSKLCLPVSAFAEAAKTAALVKLLDEIKSKGSRPLIFSQWKIVLDILEWV 639

Query: 87  ---------AFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFF 135
                           + +       +N     +        + G GLNL  G + ++  
Sbjct: 640 LRSRGHVFVRLDGSTDVHERQQICDAFNRPGSEIFAFLLSTRAGGQGLNLT-GADTVIIH 698

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++ +     I+R    R  + G  R V V+ L+   T+DE ++Q    K  +   +L
Sbjct: 699 DCDFNPQ-----IDRQAEDRCHRLGQTRPVTVHRLVTAGTVDERIVQIAERKLDLDAAVL 753

Query: 196 NALKK 200
           +  K 
Sbjct: 754 SDTKA 758


>gi|73977786|ref|XP_867138.1| PREDICTED: similar to SWI/SNF related matrix associated actin
           dependent regulator of chromatin subfamily A member 5
           (SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5) (Sucrose nonfermenting
           protein 2 homolog) (hSNF2H)... isoform 4 [Canis
           familiaris]
          Length = 1040

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|28211487|ref|NP_782431.1| SWF/SNF family helicase [Clostridium tetani E88]
 gi|28203928|gb|AAO36368.1| SWF/SNF family helicase [Clostridium tetani E88]
          Length = 1093

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 27/214 (12%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +       ++ +              S   K  QL        ++ +     + K
Sbjct: 867  KVYKAYANYAMELIEKKVKDDEFKKSKIAILSYITKLRQLCLDPTVTMKDYN---GGNGK 923

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            ++AL  ++ ++      I++   F S L                       +K    +++
Sbjct: 924  MEALVDLLLQSIGEGHRILIFSQFTSVLKNIGKRIIKEGIDFSYLDGSIPSEKRMNMVRD 983

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N+GK  +      + G GLNL    ++++ F  WW+       +E     R  + G + 
Sbjct: 984  FNDGKNSVFLISLKAGGTGLNLTS-ADVVIHFDPWWNPA-----VEDQATDRAHRIGQQN 1037

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V V  +IA+ TI+E ++     K  +   L+  
Sbjct: 1038 VVEVIKIIAKGTIEEKIILLQEEKKKLISELMGD 1071


>gi|15224228|ref|NP_179466.1| CHR8 (chromatin remodeling 8); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein
           [Arabidopsis thaliana]
 gi|330251711|gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana]
          Length = 1187

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 25/189 (13%)

Query: 32  CLQLANGAVYYDEEKHWKEVH------DEKIKALEVII--EKANAAPIIVAYHFNSDLAR 83
             ++ N     + E   +           K+K +  ++   K     +++       L  
Sbjct: 699 MRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDI 758

Query: 84  LQKAFPQGRTLDKDP----------CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNIL 132
           L+          +              I E+N    + +        G G NL  G N +
Sbjct: 759 LESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLT-GANRV 817

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + F   W+              R  + G K+ V VY LI + TI+E V  R   K  + +
Sbjct: 818 IIFDPDWNPSNDM-----QARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTN 872

Query: 193 LLLNALKKE 201
            +L   ++ 
Sbjct: 873 KILKNPQQR 881


>gi|50309923|ref|XP_454975.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644110|emb|CAH00062.1| KLLA0E22617p [Kluyveromyces lactis]
          Length = 1033

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 64/215 (29%), Gaps = 33/215 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVY----------YDEEKHWKEVHDEKIKALEVII 63
           +L                  ++ N              Y++  +       K++ ++ ++
Sbjct: 571 ELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLL 630

Query: 64  --EKANAAPIIVAYHFNSDLARLQKAFPQGRTL---------------DKDPCTIQEWNE 106
               +     ++       L  LQ+                             + ++N 
Sbjct: 631 LLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNN 690

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +        G G+NL  G N ++ F   W+              R  + G KR V 
Sbjct: 691 EPYDVFLLTTRVGGLGINLT-GANRIIIFDPDWNPSTDM-----QARERAWRIGQKREVT 744

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +Y L+   +I+E +  R   K  + + +L   K++
Sbjct: 745 IYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK 779


>gi|228213|prf||1718318A GAM1 gene
          Length = 1703

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 1022 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEAQINPTRETNDD 1081

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 1082 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 1141

Query: 97   DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1142 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1195

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 1196 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 1240


>gi|293401290|ref|ZP_06645434.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305416|gb|EFE46661.1| HepA/SNF2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1075

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIV 73
            +G         S   +  QL        E          KI A    I   +A+   +++
Sbjct: 874  KGFENSKIMVLSMLTRLRQLCCDPRLLYENYQGVG---NKINACMEFIENCRASGKKVLL 930

Query: 74   AYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
               F S L                        +    +  +N    P+      + G GL
Sbjct: 931  FSQFTSLLSLIEKELKQREIDYYLLKGSTPKVQRQQYVNAFNVDATPVFLISLKAGGTGL 990

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL     +++ F  WW++             R  + G    V V  LIA++TI+E ++  
Sbjct: 991  NLTS-AEVVIHFDPWWNVSAQ-----NQATDRAYRIGQHNNVQVVKLIAKDTIEEKIMHL 1044

Query: 184  LRTKSTIQDLLLN 196
               K  + D +++
Sbjct: 1045 QELKQDLSDSIIH 1057


>gi|313898599|ref|ZP_07832134.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956483|gb|EFR38116.1| SNF2 family N-terminal domain protein [Clostridium sp. HGF2]
          Length = 1077

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 21/188 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN 78
                  S   +  QL        E  +       KI A    I   + +   +++   F 
Sbjct: 881  SKIMILSMLTRLRQLCCDPRLLYENYNGIG---AKISACMEFIESCRESGKKVLLFSQFT 937

Query: 79   SDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            S L                        +    +  +N    P+      + G GLNL   
Sbjct: 938  SLLSLLEKELIRQDIPYYLLKGSTPKLQRQQLVNSFNSDDTPIFLISLKAGGTGLNLTS- 996

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              +++ F  WW++             R  + G    V V  LIA++TI+E ++Q    K 
Sbjct: 997  AEVVIHFDPWWNVSAQ-----NQATDRAYRIGQHNNVQVVKLIAKDTIEEKIMQLQSLKQ 1051

Query: 189  TIQDLLLN 196
             + D +++
Sbjct: 1052 DLSDSIIH 1059


>gi|160880712|ref|YP_001559680.1| non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
 gi|160429378|gb|ABX42941.1| Non-specific serine/threonine protein kinase [Clostridium
            phytofermentans ISDg]
          Length = 1069

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 2    KQY----HKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y     + + ++Y ++  +G         +   +  Q+      + +E        + 
Sbjct: 847  KVYVSYLAEVRNDIYSEIATKGIEKSQMKILAALTRLRQICCHPSTFLDEYDGGSGKLD- 905

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWN 105
            +    +    AN   I++   F S L  +                   + +    ++ +N
Sbjct: 906  LLLELIEEALANDHRILIFSQFTSMLKIMEAELKKLSVSYFYLEGSTPITERNDFVKRFN 965

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+  +      + G GLNL  G + ++ +  WW+       +E     R  + G K  V
Sbjct: 966  AGEGSIFLISLKAGGTGLNL-VGADTVIHYDPWWNPA-----VEEQATDRVYRIGQKNNV 1019

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V  L+ +NTI+E + +  + K  + D ++ +
Sbjct: 1020 HVIKLLTKNTIEEKIFKLQKKKKELSDSIIQS 1051


>gi|114596225|ref|XP_001144256.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 1 [Pan troglodytes]
          Length = 1013

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|224098058|ref|XP_002192409.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1
           [Taeniopygia guttata]
          Length = 1189

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 87/245 (35%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 532 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 591

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 592 PPYTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRL 651

Query: 91  -GRTLDKDPCT-------------IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            G+T  ++                I  +N       +      + G G+NL    ++++ 
Sbjct: 652 DGQTPHEEREVGKLYVNKKSLSEAIDTFNAPNSSKFIFMLSTRAGGLGINL-ATADVVIL 710

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 711 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 765

Query: 195 LNALK 199
           +   +
Sbjct: 766 IQQGR 770


>gi|328861152|gb|EGG10256.1| hypothetical protein MELLADRAFT_94587 [Melampsora larici-populina
           98AG31]
          Length = 984

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 34/225 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTV----KCLQLANGAVYYD-------EEKHWK 49
           +K+  +  +++   ++ E  +  NS ++ +    +  ++ +             E     
Sbjct: 424 VKEVKELSKQISYAIESETKDTSNSYTRLMNLLIQLRKVCDHPYLMPNSEPEPFEVAEHV 483

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKD 97
                K+  L+ ++         I++   F   L  L+               G +  + 
Sbjct: 484 VEASNKLILLDKLLTSLIPQGKRILIFSGFTRMLDILEDFLNLRSIGFLRLDGGTSRPRR 543

Query: 98  PCTIQEWNEG-----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              I+ +          P+     ++ G G+NL    + +V +   W+ +     ++   
Sbjct: 544 SLNIRLFQNSFQGQLPKPVFLISTSAGGLGINLTA-ADTVVLYDSSWNPQ-----VDIQA 597

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  R V VY LI   +++E +L RLR K  +   ++ A
Sbjct: 598 IARAHRIGQTRPVTVYRLICAASVEEQMLSRLRKKLYLSLKIMEA 642


>gi|221054017|ref|XP_002261756.1| SNF2-family protein [Plasmodium knowlesi strain H]
 gi|193808216|emb|CAQ38919.1| SNF2-family protein, putative [Plasmodium knowlesi strain H]
          Length = 3207

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH------D 53
            ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 1648 IEFYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCCEPVDKDEYKERLVYSS 1707

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
             KI  LE ++ +       +++       L  L +         +              +
Sbjct: 1708 GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMSKEMRKKAM 1767

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1768 NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 1821

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 1822 GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 1863


>gi|2213862|gb|AAC47719.1| PfSNF2L [Plasmodium falciparum]
          Length = 1422

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 27/219 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    L           +  ++  +  N    +D  +    +          
Sbjct: 564 KLYSDILSKNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 623

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   K   + +++       L  +                    D+    I 
Sbjct: 624 KMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRIN 683

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G
Sbjct: 684 QFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIG 737

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K+ V VY  + QN+++E +++R   K  +  L++   K
Sbjct: 738 QKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGK 776


>gi|301777862|ref|XP_002924349.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like
           [Ailuropoda melanoleuca]
          Length = 1052

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|301166647|emb|CBW26223.1| putative helicase [Bacteriovorax marinus SJ]
          Length = 1063

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 21/209 (10%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y++ +      L  +           +     ++  Q A      +      E    +
Sbjct: 841  EIYNELKEHYRSKLMDKVQKVGIKKSKVHILEALLRLRQAACHPGLINPLYLDSESAKLE 900

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNE 106
            I   ++ +   +    +V   F   L           ++ ++  G+T +++    +    
Sbjct: 901  ILVEKLKVIAKSGEKALVFSQFTQFLKIVQNRLKAEGIEFSYLDGQTRNREEVIDEFKEV 960

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                       + G GLNL            WW+     Q I+RI      + G K  V+
Sbjct: 961  PDKTAFLISLKAGGFGLNLTQ-AKYCFLLDPWWNPAVEGQAIDRI-----HRIGQKSEVY 1014

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               L+++ T++E +++  + K  + D L 
Sbjct: 1015 AIKLLSEGTVEEKIIEMQKRKKKLVDNLF 1043


>gi|327273932|ref|XP_003221733.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like [Anolis
           carolinensis]
          Length = 1036

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 393 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 452

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + I++       L  L+             
Sbjct: 453 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRILIFSQMTRVLDILEDYCMWRNYEYCRL 512

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 513 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 567

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 568 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 619


>gi|298387126|ref|ZP_06996680.1| Snf2 family protein [Bacteroides sp. 1_1_14]
 gi|298260276|gb|EFI03146.1| Snf2 family protein [Bacteroides sp. 1_1_14]
          Length = 1027

 Score =  104 bits (260), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)

Query: 4    YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y + +  L   L  +         F+  +  ++  QLA        +        E+I  
Sbjct: 810  YEQEKNSLRNILLQQPENRDRYHMFSILNGILRLRQLACHPQLIFPDFDGISGKTEQIID 869

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
                + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 870  TFDTL-RSEGHKVLIFSSFVRHLEILAEVFRQRGWKYALLTGSTNNRPSEIAHFTEQKDV 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 929  QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
             I QN+I+E +LQ    K  + +  +
Sbjct: 983  FITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|297293442|ref|XP_002804257.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like [Macaca
           mulatta]
          Length = 1052

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|299117330|emb|CBN75290.1| similar to helicase, lymphoid-specific isoform 9 [Ectocarpus
           siliculosus]
          Length = 944

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 32/219 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNS-ASKTVK---------CLQLANGA--VYYDEEKHWKEVH 52
            + + ++   L  +N        SK  K           Q+ +G   + +          
Sbjct: 703 RRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFT 762

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPC 99
             K++ L  ++ +  +    I++   +              +            + +   
Sbjct: 763 SAKMERLRALLPQLVSEGHRILLFSQWTRLLDLLEVLLGESMGMTFCRLDGSTPVSERKA 822

Query: 100 TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++  +  IP+      + G G+NL    + ++   + ++ E      +R    R  +
Sbjct: 823 LIDKFGADTSIPVFLLSTRAGGLGINLTA-ADTVILHDVDFNPEN-----DRQAEDRCHR 876

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V V  ++A  T+DE +      K  +   +LN 
Sbjct: 877 IGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQRVLND 915


>gi|124515798|gb|EAY57307.1| putative helicase, Snf2 family [Leptospirillum rubarum]
          Length = 1049

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 28/223 (12%)

Query: 3    QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y       + E+    +       N  +  ++              K        K   
Sbjct: 817  AYRAILLMGKEEIRAVSKDRKTFRMNMLALLLRLRLFCCHPDLVPNPKGISVPAPAKFLE 876

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE 106
                I +A  +   I++   F   L  L+                  L +    ++E+  
Sbjct: 877  TLAKIREALADGHRILLFSQFTGMLDILENALLKDGILFSRLDGKTPLKERQRLVEEFQR 936

Query: 107  ---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               G   +  +   + G GL L    + +  +  WW+ +     +E     R  + G KR
Sbjct: 937  QKPGSPSVFLSSLKAGGVGLTLTN-ADFVFHYDPWWNPQ-----VENQATDRSHRIGQKR 990

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA---LKKETI 203
             VFVY ++ + T++E V      K  + DL++     + +E +
Sbjct: 991  PVFVYRMLTRGTVEEKVKALKEEKLELFDLVMGEGQPVAQEWL 1033


>gi|255955967|ref|XP_002568736.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590447|emb|CAP96635.1| Pc21g17380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1399

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 787  KLYKQLVTHNKMAVTDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPTRMSNDL 846

Query: 54   -----EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 847  LWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 906

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 907  RSDLLRQFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 960

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 961  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1005


>gi|220914252|ref|YP_002489561.1| non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
 gi|219861130|gb|ACL41472.1| Non-specific serine/threonine protein kinase [Arthrobacter
            chlorophenolicus A6]
          Length = 1160

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 22/210 (10%)

Query: 2    KQYH---KFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y    + +R+    L +  N   F          QL+      D       V   K+ 
Sbjct: 940  KVYQTHLQRERQKILGLIEDVNKNRFTIFQSLTLLRQLSLDVSLVDPA--LSAVRSSKLD 997

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEG 107
             L   +E   A     ++   F   L ++++                      + E+  G
Sbjct: 998  VLFEQLEDLVAEGHRALIFSQFTGFLGKVRERLDEEEIEYCYLDGGTRNRADVVSEFKNG 1057

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              P+      + G GLNL    + +     WW+        E   V R  + G  R V V
Sbjct: 1058 SAPVFLISLKAGGFGLNLTE-ADYVFLLDPWWNPAS-----EAQAVDRTHRIGQARNVMV 1111

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y L+A++TI+E V+     KS +   ++  
Sbjct: 1112 YRLVAKDTIEEKVMALKTRKSQLFADVMEG 1141


>gi|126313652|ref|XP_001368284.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 982

 Score =  104 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 71/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +       +        E          
Sbjct: 373 KYYKALLMKDLDAFENETAKKVKLQNILSQLRKCVGHPYLFDGVEPEPFEIGDHLIEASG 432

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++         +++       L  LQ                   ++    I+
Sbjct: 433 KLHLLDKLLSFLYTRHHRVLLFSQMTHMLDILQDYMDYRGYSYERLDGSVRGEERHLAIK 492

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +   + R  + G K
Sbjct: 493 NFGQQPIFVFLLSTKAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAIARAHRIGQK 546

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V +  LI ++T++E++ +R  +K  +   ++  
Sbjct: 547 KSVKIIRLIGRDTVEEVIYRRAASKLRLTSAIIEG 581


>gi|253568895|ref|ZP_04846305.1| Snf2 family helicase [Bacteroides sp. 1_1_6]
 gi|251840914|gb|EES68995.1| Snf2 family helicase [Bacteroides sp. 1_1_6]
          Length = 1027

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)

Query: 4    YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y + +  L   L  +         F+  +  ++  QLA        +        E+I  
Sbjct: 810  YEQEKNSLRNILLQQPENRDRYHMFSILNGILRLRQLACHPQLIFPDFDGISGKTEQIID 869

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
                + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 870  TFDTL-RSEGHKVLIFSSFVRHLEILAEVFRQRGWKYALLTGSTNNRPSEIAHFTEQKDV 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 929  QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
             I QN+I+E +LQ    K  + +  +
Sbjct: 983  FITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|35505451|gb|AAH57567.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
 gi|38571574|gb|AAH62966.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 282 KYYKAILMKDLDAFENETSKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASG 341

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 342 KLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 401

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 402 NFGNQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 455

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 456 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|325651836|ref|NP_003592.3| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Homo sapiens]
 gi|57014128|sp|O60264|SMCA5_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5;
           Short=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin A5; AltName: Full=Sucrose
           nonfermenting protein 2 homolog; Short=hSNF2H
 gi|2967452|dbj|BAA25173.1| hSNF2H [Homo sapiens]
 gi|18606276|gb|AAH23144.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Homo sapiens]
 gi|119625476|gb|EAX05071.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Homo sapiens]
 gi|168275690|dbj|BAG10565.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [synthetic construct]
 gi|325463895|gb|ADZ15718.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [synthetic construct]
          Length = 1052

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|29348762|ref|NP_812265.1| Snf2 family helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340668|gb|AAO78459.1| Snf2 family helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1027

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)

Query: 4    YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y + +  L   L  +         F+  +  ++  QLA        +        E+I  
Sbjct: 810  YEQEKNSLRNILLQQPENKDRYHMFSILNGILRLRQLACHPQLIFPDFDGVSGKTEQIID 869

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
                + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 870  TFDTL-RSEGHKVLIFSSFVRHLEILAEVFRQRGWKYALLTGSTNNRPSEIAHFTEQKDV 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 929  QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
             I QN+I+E +LQ    K  + +  +
Sbjct: 983  FITQNSIEEKILQLQEDKRRLAETFI 1008


>gi|206602042|gb|EDZ38524.1| Putative helicase, Snf2 family [Leptospirillum sp. Group II '5-way
            CG']
          Length = 1049

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 28/223 (12%)

Query: 3    QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y       + E+    +       N  +  ++              K        K   
Sbjct: 817  AYRAILLMGKEEIRAVSKDRKTFRMNMLALLLRLRLFCCHPDLVPNPKGISVPAPAKFLE 876

Query: 59   LEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNE 106
                I +A  +   I++   F   L  L+                  L +    ++E+  
Sbjct: 877  TLAKIREALADGHRILLFSQFTGMLDILENALLKDGILFSRLDGKTPLKERQRLVEEFQR 936

Query: 107  ---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               G   +  +   + G GL L    + +  +  WW+ +     +E     R  + G KR
Sbjct: 937  QKPGSPSVFLSSLKAGGVGLTLTN-ADFVFHYDPWWNPQ-----VENQATDRSHRIGQKR 990

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA---LKKETI 203
             VFVY ++ + T++E V      K  + DL++     + +E +
Sbjct: 991  PVFVYRMLTRGTVEEKVKALKEEKLELFDLVMGEGQPVAQEWL 1033


>gi|114596221|ref|XP_517459.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 5 [Pan troglodytes]
 gi|114596223|ref|XP_001144488.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 4 [Pan troglodytes]
          Length = 1052

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|51316190|sp|O12944|RAD54_CHICK RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Putative recombination factor GdRad54;
           AltName: Full=RAD54 homolog
 gi|1905887|gb|AAB54115.1| putative recombination factor GdRad54 [Gallus gallus]
          Length = 733

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y  F ++     +L+   I   +  S      +L N      ++   +E         
Sbjct: 411 ELYKNFLKQAKPVEELKEGKINVSS-LSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 469

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+   +  +   +++  ++   L   +K         
Sbjct: 470 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLY 529

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 530 VRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 588

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 589 -----DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 637


>gi|148706991|gb|EDL38938.1| chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 282 KYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASG 341

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 342 KLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 401

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 402 NFGNQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 455

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 456 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|293342854|ref|XP_002725339.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5-like [Rattus norvegicus]
          Length = 1046

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 208 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 267

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 268 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 327

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 328 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 382

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 383 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 434


>gi|187779662|ref|ZP_02996135.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
 gi|187773287|gb|EDU37089.1| hypothetical protein CLOSPO_03258 [Clostridium sporogenes ATCC 15579]
          Length = 1077

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 37/231 (16%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       + E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKEEFYKEIKERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
            I+ L  I+         I++   F S L                       +     +++
Sbjct: 908  IETLLDIVNSNINEGHKILLFSQFTSVLKNISEVFKANNINYLYLDGSTKANVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDE----------LVLQRLRTKSTIQDLLLNALKKETIH 204
             V V  LIA+ TI+E           ++ ++  K+  +++LL+ + +E I 
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVIDKNLGEEVLLSNMAEEEIE 1072


>gi|66809969|ref|XP_638708.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
 gi|60467321|gb|EAL65353.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1917

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 31/224 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y     + + +L     E     +   +  +  N    Y   +   E+          
Sbjct: 1002 KYYKWILTKNFQELNKGKGEKTTLLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSMI 1061

Query: 53   --DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDP 98
                K+  L+ ++   K     +++       L              +      + +K  
Sbjct: 1062 RASGKLVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRS 1121

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N    P         + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 1122 QAMDRFNAVDSPDFCFLLSTKAGGLGINL-STADTVIIFDSDWNPQN-----DLQAEARA 1175

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G K  V +Y L+++++++E +L+R + K  +  L++  ++K
Sbjct: 1176 HRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVLDHLVIQTMEK 1219


>gi|297744167|emb|CBI37137.3| unnamed protein product [Vitis vinifera]
          Length = 1116

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 32  CLQLANGAVYYDEEKHWKEVH------DEKIKALEVII--EKANAAPIIVAYHFNSDLAR 83
             ++ N     + E  ++           K+K +  ++   K     +++       L  
Sbjct: 686 MRKICNHPDLLEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQQMLDI 745

Query: 84  LQKAFPQGRTLDKDP----------CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
           L+     G  + +              I E+N+   + +        G G NL  G N +
Sbjct: 746 LENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLT-GANRV 804

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + +   W+              R  + G  R V VY LI + TI+E V QR   K  + +
Sbjct: 805 IIYDPDWNPSTDM-----QARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTN 859

Query: 193 LLLNALKKE 201
            +L   +++
Sbjct: 860 KILKNPQQK 868


>gi|110004998|emb|CAK99329.1| hypothetical dna/rna helicase protein [Spiroplasma citri]
          Length = 1098

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 28/214 (13%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +      ++                 +   K  Q+       D++   +     K
Sbjct: 872  KIYAAYANAAREEINKILTAGQYQQNRLKIFATLTKLRQICCDPSILDKKYQNE---SAK 928

Query: 56   IKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQE 103
            + AL  I +    +   I++   F            ++             +      ++
Sbjct: 929  LDALRDIFDDLAGSGHKILIFSQFTTVLKRIKAIVEEIGLQYFYLDGKTRSESRVLMTEK 988

Query: 104  WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N +  I +      + G GLNL    ++++ F  WW+       +E     R  + G +
Sbjct: 989  FNEDKIINVFLISLKAGGVGLNLTA-ADVVIHFDPWWNPS-----VENQATDRAHRFGQQ 1042

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              V V  LIA+ TI+E +L     K  + + +LN
Sbjct: 1043 NTVQVIKLIAKGTIEEKILTIQNNKQEVINAVLN 1076


>gi|71033631|ref|XP_766457.1| DNA-dependent ATPase [Theileria parva strain Muguga]
 gi|68353414|gb|EAN34174.1| DNA-dependent ATPase, putative [Theileria parva]
          Length = 1253

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKT----VKCLQLANGAVYY--------DEEKHWK 49
           + Y    R+   +L  ++        +     ++  +  N    +        D      
Sbjct: 452 QLYRDLLRKNVPELGTDDSTKSGIHVQLLNLAMQLRKACNHPYLFEGYEDRNEDPFGEHV 511

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  ++ +I +   N++ I++       L  L+                 + +  
Sbjct: 512 VQNSGKLCLVDKLIPRLLGNSSRILIFSQMARMLDILEDYCRMRNYLYFRIDGNTSGEDR 571

Query: 98  PCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N  +  +        + G G+NL    ++++ +   W+ +     ++   + R
Sbjct: 572 DYQISSFNHPESKVNIFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAIDR 625

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK---KETIHV 205
             + G  + V+VY L+ Q TI+E +++R   K  +   ++   +   KE + +
Sbjct: 626 AHRIGQLKPVYVYRLVHQYTIEEKIIERATLKLQLDTAVIQHGRLAQKELLQM 678


>gi|47217344|emb|CAG11049.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 985

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 89/233 (38%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH- 47
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 342 IKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 401

Query: 48  -------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                     V+  K+  L+ ++ K     + +++       L  L+             
Sbjct: 402 PPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRL 461

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 462 DGQTPHEERQISINAFNEPNSSKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 516

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  +++   +
Sbjct: 517 -VDLQAMDRAHRIGQQKQVRVFRYITENTVEERIVERAEMKLRLDSIVIQQGR 568


>gi|119181968|ref|XP_001242147.1| hypothetical protein CIMG_06043 [Coccidioides immitis RS]
          Length = 1410

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 788  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 847

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 848  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 907

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 908  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|74227041|dbj|BAE38319.1| unnamed protein product [Mus musculus]
          Length = 883

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 282 KYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASG 341

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 342 KLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 401

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 402 NFGNQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 455

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 456 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|302673648|ref|XP_003026510.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
 gi|300100193|gb|EFI91607.1| hypothetical protein SCHCODRAFT_258840 [Schizophyllum commune H4-8]
          Length = 1361

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 80/226 (35%), Gaps = 34/226 (15%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEV------ 51
           + Y + ++ ++  + +G+              ++  ++      +DE +           
Sbjct: 739 QLYKQMKKYKMIANGKGKGQSTGGVKGLSNELMQLRKICQHPFLFDEVEDVVNTTQLIDE 798

Query: 52  ----HDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLD 95
                  K++ L  I+ K  A    +++ +           F   +         G   +
Sbjct: 799 KIIRSSGKVELLSRILPKLFATDHRVLIFFQMTKVMDIMEDFLKMMGWKYLRLDGGTKTE 858

Query: 96  KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +Q +N  +  I +      + G GLNLQ   + ++ F   W+        +    
Sbjct: 859 ERASYVQLFNAKDSDIRVFILSTRAGGLGLNLQT-ADTVIIFDSDWNP-----HADLQAQ 912

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  +AV +   I + +++E + QR R K  I   ++ A +
Sbjct: 913 DRAHRIGQTKAVLILRFITEKSVEEAMYQRARYKLDIDGKVIQAGR 958


>gi|71649857|ref|XP_813640.1| transcription activator [Trypanosoma cruzi strain CL Brener]
 gi|70878541|gb|EAN91789.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1092

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 32/224 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDE--------EKHWKEVH 52
           K Y     +    L   +  + +S +   +   ++ N     D                H
Sbjct: 392 KWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIVKH 451

Query: 53  DEKIKALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             K+  L+ ++      K     +++   F + L  L+                 +    
Sbjct: 452 SGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDR 511

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N       +      + G G+NLQ   N +V +   W+ +     ++     R
Sbjct: 512 DAQMAAFNSPNSDYFIFLLSTRAGGLGINLQA-ANHVVIYDSDWNPQ-----MDLQAQDR 565

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G KR V VY  I + T++E + +R   K  +  +++   +
Sbjct: 566 AHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGR 609


>gi|13386044|ref|NP_080815.1| chromodomain-helicase-DNA-binding protein 1-like [Mus musculus]
 gi|81916841|sp|Q9CXF7|CHD1L_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|12852350|dbj|BAB29376.1| unnamed protein product [Mus musculus]
 gi|30931375|gb|AAH52385.1| Chromodomain helicase DNA binding protein 1-like [Mus musculus]
          Length = 900

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 282 KYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASG 341

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 342 KLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 401

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 402 NFGNQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 455

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 456 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIEG 490


>gi|320034578|gb|EFW16522.1| SNF2-family ATP-dependent chromatin remodeling factor snf21
            [Coccidioides posadasii str. Silveira]
          Length = 1410

 Score =  104 bits (259), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 788  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 847

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 848  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 907

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 908  RSELLRRFNDPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|40254124|ref|NP_444354.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Mus musculus]
 gi|55977469|sp|Q91ZW3|SMCA5_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5; AltName:
           Full=Sucrose nonfermenting protein 2 homolog;
           Short=mSnf2h
 gi|16551316|gb|AAL25793.1|AF375046_1 ATP-dependent chromatin remodeling protein SNF2H [Mus musculus]
 gi|31419851|gb|AAH53069.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Mus musculus]
          Length = 1051

 Score =  104 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 583

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 584 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 635


>gi|149698191|ref|XP_001502076.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 5 [Equus
           caballus]
          Length = 1052

 Score =  104 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|190348672|gb|EDK41171.2| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score =  104 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYC-----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
           K Y +  +         D  G+ I   N+ ++ ++  ++ N    Y+E ++         
Sbjct: 244 KLYQQMLKYNLLFSSNPDGDGKPIAIKNTNNQIMQLRKICNHPFVYEEVENMINPTADTN 303

Query: 54  -------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTL 94
                   K + L+ I+ K       +++ +   S +  +                    
Sbjct: 304 DEIWRVAGKFELLDRILPKLKATGHRVLIFFQMTSIMNIMEDFLRLRDLKYMRLDGATKA 363

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     ++ +NE             + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 364 DDRTGLLKLFNEENSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQA 417

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 418 QDRAHRIGQKNEVRIIRLITEDSVEEMILERAHAKLEIDGKVIQAGK 464


>gi|119612874|gb|EAW92468.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_a [Homo
           sapiens]
          Length = 1313

 Score =  104 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 811 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 870

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 871 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 929

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 930 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 979


>gi|322827781|gb|EFZ31794.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1087

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 32/224 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDE--------EKHWKEVH 52
           K Y     +    L   +  + +S +   +   ++ N     D                H
Sbjct: 387 KWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIVKH 446

Query: 53  DEKIKALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             K+  L+ ++      K     +++   F + L  L+                 +    
Sbjct: 447 SGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDR 506

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N       +      + G G+NLQ   N +V +   W+ +     ++     R
Sbjct: 507 DAQMAAFNSPNSDYFIFLLSTRAGGLGINLQA-ANHVVIYDSDWNPQ-----MDLQAQDR 560

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G KR V VY  I + T++E + +R   K  +  +++   +
Sbjct: 561 AHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGR 604


>gi|115959195|ref|XP_001193315.1| PREDICTED: similar to excision repair protein, partial
           [Strongylocentrotus purpuratus]
          Length = 953

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 42/232 (18%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------- 42
           + Y ++   +E    L+GE    +   +  +   ++ N                      
Sbjct: 263 QVYEEYLASKECNLILRGE----YKVFAGLITLRKICNHPDLVSGGPRIFSHQNLSDEDL 318

Query: 43  -DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--- 96
            +E+++       K+  +E ++   K     +++       L  ++       +  +   
Sbjct: 319 TEEQRYGYYKRAGKMIVVESLLKLWKEQNHRVLLFSQSKQMLDIMEDFVKDRYSYMRMDG 378

Query: 97  ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I ++N + +I L        G G+NL  G N ++ +   W+        +
Sbjct: 379 TTTISSRQPLITKFNSDPRIFLFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----D 432

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G  + V +Y L+   +I+E +  R   K+ + + +L   ++ 
Sbjct: 433 TQARERSWRIGQTKQVTIYRLLTAGSIEEKIYHRQIFKTFLTNRVLKDPRQR 484


>gi|328474032|gb|EGF44843.1| SNF2 family helicase [Listeria monocytogenes 220]
          Length = 1038

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 21/194 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +L       + E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 851  EKIQADLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 907

Query: 65   --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              + N   I++   F   L  ++                         +  +NEG+  + 
Sbjct: 908  TARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 967

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ + LWW+       +E     R  + G KR V V+ +I 
Sbjct: 968  LISLKAGGTGLNL-VGADTVILYDLWWNPA-----VEEQATGRAHRIGQKRVVQVFRMIT 1021

Query: 173  QNTIDELVLQRLRT 186
            + TI+E +    + 
Sbjct: 1022 KGTIEERIFDLQKK 1035


>gi|150864673|ref|XP_001383607.2| DNA dependent ATPase [Scheffersomyces stipitis CBS 6054]
 gi|149385929|gb|ABN65578.2| DNA dependent ATPase [Scheffersomyces stipitis CBS 6054]
          Length = 1067

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 37/229 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVHD 53
           + Y KF      +L        N         ++ N     +           +   V  
Sbjct: 567 ELYEKFLHS--EELSSILKGRRNVLMGVDILRKICNHPDLVNRDILEHKKNYNYGNPVKS 624

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA------------------FPQGRT 93
            K++ L+ ++   ++     ++       L  L+K                         
Sbjct: 625 GKMQVLKNLLQLWQSQEHKTLLFCQTRQMLDILEKFVANLRLLDIDHEYFTYLRMDGSTP 684

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    + ++N +  + +        G G+NL  G + ++ +   W+        +   
Sbjct: 685 IAKRQDLVDKFNSDPNLHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQA 738

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  + G K+ + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 739 RERAWRLGQKKDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 787


>gi|253583434|ref|ZP_04860632.1| non-specific serine/threonine protein kinase [Fusobacterium varium
            ATCC 27725]
 gi|251834006|gb|EES62569.1| non-specific serine/threonine protein kinase [Fusobacterium varium
            ATCC 27725]
          Length = 1022

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 17/213 (7%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  +  +   +L+ +N  +        +  QL N    +  +   +     +     +
Sbjct: 806  KLYLAYLEKCKKELREKN-NSLEIFVWLTRLRQLCNHPKLFLADYDGES-SKLEALLELL 863

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEGKIPLL 112
               K+    +++   F   L+ +++  P+  T                ++ +N G+  + 
Sbjct: 864  EECKSGGHRVLLFSQFTEMLSIIKENIPKDMTYLYLDGKTKSEHRMELVERFNSGEGDIF 923

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + ++ F  WW+       +E     R  + G  + V V+ +IA
Sbjct: 924  IISLKAGGSGLNLT-GADTVIHFDPWWN-----SSVENQATDRAYRMGQTKNVNVFKMIA 977

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + TI+E +      K  +   +L+  ++  I +
Sbjct: 978  KGTIEEKINIIKDEKEKLIREILDEKQENIISM 1010


>gi|224092566|ref|XP_002309665.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222855641|gb|EEE93188.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1340

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           + Y       Y  L        +  +  ++  +L       +  +   E           
Sbjct: 551 EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFRQLLE 610

Query: 53  -DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K++ L+ ++   K     +++   F   L  L+      + + +             
Sbjct: 611 TSGKLQLLDKLMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWMYERIDGKVGGAERQV 670

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 671 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 724

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 725 RLGQTNKVLIYRLITRGTIEERMMQLTKKKMVLEHLVVGRLKAQNIN 771


>gi|71400983|ref|XP_803224.1| transcription activator [Trypanosoma cruzi strain CL Brener]
 gi|70865998|gb|EAN81778.1| transcription activator, putative [Trypanosoma cruzi]
          Length = 1038

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 32/224 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDE--------EKHWKEVH 52
           K Y     +    L   +  + +S +   +   ++ N     D                H
Sbjct: 413 KWYMHVLAKDAEALNKASGGSMSSLTNIMMNLRKVINHPYMMDGGEEGPPFITDERIVKH 472

Query: 53  DEKIKALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             K+  L+ ++      K     +++   F + L  L+                 +    
Sbjct: 473 SGKMMILDKLLYRLRREKEEKHKVLIFSQFTTMLDILEDYCGMRGFRVCRIDGNTSGYDR 532

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N       +      + G G+NLQ   N +V +   W+ +     ++     R
Sbjct: 533 DAQMAAFNSPNSDYFIFLLSTRAGGLGINLQA-ANHVVIYDSDWNPQ-----MDLQAQDR 586

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G KR V VY  I + T++E + +R   K  +  +++   +
Sbjct: 587 AHRIGQKRVVRVYRFITEGTVEEKIYRRALKKLYLDAMVVQHGR 630


>gi|254586199|ref|XP_002498667.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
 gi|238941561|emb|CAR29734.1| ZYRO0G15796p [Zygosaccharomyces rouxii]
          Length = 1651

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 78/225 (34%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y +  +     +  +  +         ++ ++  ++ N    ++  +            
Sbjct: 973  MYQQMLKHRRLFIGDQTNKKMVGLRGFNNQIMQLKKICNHPFVFEAVEDQINPTRETNAA 1032

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ LE ++ K       +++ +     +  ++                   D+
Sbjct: 1033 IWRVAGKLELLERVLPKLKATGHRVLIFFQMTQIMDIMEDFLRYIDIKYLRLDGHTKSDE 1092

Query: 97   DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N+ +           + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 1093 RSELLSLFNDEEAGYFCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 1146

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI QN+++E++L++   K  I   ++ A K
Sbjct: 1147 RAHRIGQKNEVKILRLITQNSVEEVILEKAHKKLDIDGKVIQAGK 1191


>gi|260940993|ref|XP_002615336.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
 gi|238850626|gb|EEQ40090.1| hypothetical protein CLUG_04218 [Clavispora lusitaniae ATCC 42720]
          Length = 1269

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 80/227 (35%), Gaps = 36/227 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA------SKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y +  +     +  +     N +      +K ++  ++ N    ++E +          
Sbjct: 752 LYQQMLKHNALFVGSQTTGTNNKSGIKGLNNKIMQLRKICNHPFVFEEVEDILNSSRITN 811

Query: 53  ------DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
                   K + L+ I+ K   +   +++ +   S +   +                   
Sbjct: 812 ELIWRTSGKFELLDRILPKFKASGHKVLIFFQMTSVMNIFEDFLRLRDMNYLRLDGSTKA 871

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +N+ +  +        + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 872 EDRQDMLKSFNKPESDIFCFLLSTRAGGLGLNLQS-ADTVIIFDTDWNPHQ-----DLQA 925

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 926 QDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 972


>gi|281351942|gb|EFB27526.1| hypothetical protein PANDA_008144 [Ailuropoda melanoleuca]
          Length = 716

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   +  S      +L N      ++   +E         
Sbjct: 392 ELYKRFLRQAKPAEELREGKMSVSS-LSSITLLKKLCNHPALIYDKCVEEEDGFEGALEI 450

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 451 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 510

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 511 VRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 569

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 570 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 618


>gi|156845664|ref|XP_001645722.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116389|gb|EDO17864.1| hypothetical protein Kpol_1043p54 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1725

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 76/226 (33%), Gaps = 35/226 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDE--- 54
             Y +  +     +  +     +S      ++ ++  ++ N    ++  +       E   
Sbjct: 1032 LYQQMLKHKRLFVGDQGNNKKSSGLRGFNNQIMQLKKICNHPFVFESVEDQINPTRETNE 1091

Query: 55   ---KIKALEVIIE------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
               ++     ++       KA    +++ +     +  ++                   D
Sbjct: 1092 NIWRVAGKFELLGRVLPKLKATGHRVLIFFQMTQIMDIMEDFLRHIDVKYLRLDGHTKHD 1151

Query: 96   KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    +  +N+             + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1152 ERSELLPMFNDPNSDYFCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 1205

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +N+++E +L++   K  I   ++ A K
Sbjct: 1206 DRAHRIGQKNEVRILRLITENSVEEAILEKAHKKLDIDGKVIQAGK 1251


>gi|290973846|ref|XP_002669658.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284083208|gb|EFC36914.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 1029

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 27/219 (12%)

Query: 1   MKQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEK 55
           +K Y +  +              F +        ++ N       EK   +        K
Sbjct: 545 VKIYDEYLKSREVTGTLDGEHLLFKA---ITNLRKVCNHPDLICTEKKPDDFGAVEKSGK 601

Query: 56  IKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCTIQE 103
           +  +E ++   K     +++             F  +             + +    I +
Sbjct: 602 MMVVEKLLSLWKEQNHRVLLFSQSKKMLDVFEPFLQERDYTYSRMDGDTPVKERSVLINQ 661

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N + KI +        G G+NL  G N ++ F   W+        +   + R  + G  
Sbjct: 662 FNSDDKIFVFLLTTKVGGLGVNL-IGANRIILFDPDWNPST-----DLQALERAWRLGQT 715

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + V VY L+   TI+E +  R   K  + + +L   +++
Sbjct: 716 KQVTVYRLMTSGTIEEKMYHRQIFKQFLSNKVLKDPRQK 754


>gi|164655795|ref|XP_001729026.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
 gi|159102915|gb|EDP41812.1| hypothetical protein MGL_3814 [Malassezia globosa CBS 7966]
          Length = 1053

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             QR+ Y  L  ++IEA N             +  ++  +  N    +            
Sbjct: 417 DMQRKWYKSLLEKDIEAVNGALSKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 476

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
                +  K+  L+ ++ K     + +++    +  L                       
Sbjct: 477 EHLVYNSGKMDILDKLLRKMKERGSRVLIFCQMSRMLDILEDYCLFREYTYCRIDGSSVH 536

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       L      + G G+NL    +++V F   W+ +      +   
Sbjct: 537 EDRIAAIDEYNRPDSDKFLFLLTTRAGGLGINLTS-ADVVVLFDSDWNPQA-----DLQA 590

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G K+ VFVY  +  ++I+E +L+R   K  +  L++   +
Sbjct: 591 MDRAHRIGQKKQVFVYRFVTDHSIEERILERAAQKLRLDQLVIQQGR 637


>gi|71005328|ref|XP_757330.1| hypothetical protein UM01183.1 [Ustilago maydis 521]
 gi|46096734|gb|EAK81967.1| hypothetical protein UM01183.1 [Ustilago maydis 521]
          Length = 1692

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 79/232 (34%), Gaps = 39/232 (16%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYD-------- 43
            +K Y + ++        +N  A   A            ++  ++ N    ++        
Sbjct: 1041 LKLYQQMKKHKMILSGEDNSTAGKKAKPQGIRGLQNAIMQLRKICNHPYVFEQVELAINP 1100

Query: 44   --EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
              E          K + L+ ++ K  A    +++ +   + +  ++              
Sbjct: 1101 TKENGPDLYRVAGKFELLDRLLPKLFATKHRVLIFFQMTAIMDIMEDFLRYRGFKYLRLD 1160

Query: 91   -GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 D     ++ +N       +      + G GLNLQ   + ++ +   W+  +    
Sbjct: 1161 GSTKPDDRSQLLKLFNAPGSDYFVFILSTRAGGLGLNLQS-ADTVIIYDSDWNPHQ---- 1215

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +     R  + G K  V +  L+ + +++E +L R + K  I+  ++ A K
Sbjct: 1216 -DLQAQDRAHRIGQKMEVRILRLVTEKSVEETILARAQDKLEIEGKVIQAGK 1266


>gi|281337316|gb|EFB12900.1| hypothetical protein PANDA_013661 [Ailuropoda melanoleuca]
          Length = 912

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 327 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 386

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 387 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 446

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 447 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 501

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 502 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 553


>gi|301620878|ref|XP_002939792.1| PREDICTED: DNA excision repair protein ERCC-6-like [Xenopus
           (Silurana) tropicalis]
          Length = 732

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 74/231 (32%), Gaps = 41/231 (17%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------D 43
           + Y  F   +E+Y  L GE           +   ++ N    +                +
Sbjct: 322 QVYQTFIDSKEVYGILNGE----MQVFPGLIALRKICNHPDLFSGGPKILKGTRDEDLEE 377

Query: 44  EEKHWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQG 91
           EE+        K+  +E ++         +++             F              
Sbjct: 378 EEQFGFWKRSGKLIVVEALLKIWHRQGHRVLLFTQSRQMLQILEVFVRSRCYSYLKMDGT 437

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            T+      I ++N +  + +        G G+NL  G N ++ +   W+        + 
Sbjct: 438 TTIASRQPLIAKYNEDPSLFVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----DT 491

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G K+ V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 492 QARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 542


>gi|213408929|ref|XP_002175235.1| SNF2 family helicase Rhp26 [Schizosaccharomyces japonicus yFS275]
 gi|212003282|gb|EEB08942.1| SNF2 family helicase Rhp26 [Schizosaccharomyces japonicus yFS275]
          Length = 983

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 34/223 (15%)

Query: 3   QYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------EEKHWKE 50
            Y +F    ++   L G+               ++ N                E    K+
Sbjct: 571 AYQQFLNSGDMNKILNGK----RQVLFGVDVLRKICNHPDLVMREFLEHKEGYEYGDPKK 626

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPC 99
               K+    + + K+     ++       L                      ++     
Sbjct: 627 SGKLKVVQALLKLWKSQNHRTLLFSQTRQMLDILEKAIGSMGDISYCRMDGTTSIGLRQG 686

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N+  +  +        G G+NL  G + ++ F   W+        +     R  +
Sbjct: 687 LVDEFNKTSRYDVFLLTTRVGGLGINLT-GADRVIIFDPDWNPST-----DAQARERAWR 740

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L++  TI+E +  R   K  + + +L    + 
Sbjct: 741 LGQKRDVVVYRLMSSGTIEEKIYHRQIFKQFLTNKILKDPNQR 783


>gi|254574520|ref|XP_002494369.1| Catalytic subunit of the SWI/SNF chromatin remodeling complex
            involved in transcriptional regulation [Pichia pastoris
            GS115]
 gi|238034168|emb|CAY72190.1| Catalytic subunit of the SWI/SNF chromatin remodeling complex
            involved in transcriptional regulation [Pichia pastoris
            GS115]
 gi|328353801|emb|CCA40198.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 2/4 [Pichia pastoris CBS
            7435]
          Length = 1649

 Score =  104 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 33/226 (14%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSA---SKTVKCLQLANGAVYYDEEKHWKEVH----- 52
            +K Y +  +     +  E+ +        +K ++  ++ N    ++E ++          
Sbjct: 998  IKLYEQMLKYNQLFVGDESKKPIGVKGLNNKLMQLRKICNHPFVFEEVENLINPTRETNN 1057

Query: 53   -----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
                   K + L+ I+ K       +++ +     +  ++                    
Sbjct: 1058 NIWRVSGKFELLDRILPKFKATGHRVLIFFQMTQIMDIMEDFLRLRDMKYLRLDGATKSD 1117

Query: 96   KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++ +N              + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1118 DRQDMLRLFNAEGSDYFAFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQ 1171

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++I+E++L +   K  I   ++ A +
Sbjct: 1172 DRAHRIGQKNEVRILRLITEDSIEEVILSKAYEKLDIDGKVIQAGR 1217


>gi|310822580|ref|YP_003954938.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309395652|gb|ADO73111.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1282

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 21/173 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            +    YD       +   K++ L  ++E  K+    ++V   F S L  +++   +G   
Sbjct: 1081 SHPRLYD---AQSGISSSKMRRLLELLEELKSEGHRVLVFSQFTSHLELVREEVERGGFT 1137

Query: 95   DK----------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             +              IQ + EGK  +      + G G+NL    + ++    WW+    
Sbjct: 1138 YQYLDGSTPLGARAKRIQAFQEGKGDVFLISLKAGGTGINLTA-ADYVIHLDPWWNPA-- 1194

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +E     R  + G  R V VY LIA+ TI+E +L     K  +   +L  
Sbjct: 1195 ---VEDQATDRAHRIGQTRPVTVYRLIARGTIEEQILSLHSDKRALVAGVLEG 1244


>gi|170572145|ref|XP_001891999.1| Potential global transcription activator SNF2L [Brugia malayi]
 gi|158603134|gb|EDP39180.1| Potential global transcription activator SNF2L, putative [Brugia
           malayi]
          Length = 1024

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFN---------SASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N           +  +   +  N    +      
Sbjct: 396 VKIYVGLSKMQREWYTRILMKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 455

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+  L+ ++ K     + +++    +  L  L+             
Sbjct: 456 PPYTTDQHLVDNSGKMVLLDKLLVKLKAQGSRVLIFSSMSRMLDLLEDYCWWRGYRYCRL 515

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I E+N+      +      + G G+NL    ++++ +   W+ +    
Sbjct: 516 DGQTVHDERQKSIDEFNKPDSDKFIFMLTTRAGGLGINLTA-ADVVIIYDSDWNPQ---- 570

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+  I  NT+DE +++R   K  +  +++   +
Sbjct: 571 -VDLQAMDRAHRIGQKKQVRVFRFITDNTVDERIIERAEMKLHLDSIVIQQGR 622


>gi|67538946|ref|XP_663247.1| hypothetical protein AN5643.2 [Aspergillus nidulans FGSC A4]
 gi|40743546|gb|EAA62736.1| hypothetical protein AN5643.2 [Aspergillus nidulans FGSC A4]
 gi|259484887|tpe|CBF81492.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
           AFUA_4G13460) [Aspergillus nidulans FGSC A4]
          Length = 1111

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH--------WK 49
           +K Y K      +      G+        +  ++  +  N    ++  +           
Sbjct: 433 VKWYQKILEKDIDAVNGAGGKKESKTRLLNIVMQLRKCCNHPYLFEGAEEGPPYTNDVHI 492

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKD 97
             +  K+  L+ ++   +A  + +++             + +               +  
Sbjct: 493 INNSGKMVILDKLLARMQAQGSRVLIFSQMSRVLDILEDYCALRKYQYCRIDGTTAHEDR 552

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 553 IAAIDEYNKPDSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 606

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V VY  I ++ I+E VL+R   K  +  L++   + +
Sbjct: 607 AHRIGQTKQVVVYRFITESAIEERVLERAAQKLRLDQLVIQQGRAQ 652


>gi|170050421|ref|XP_001861304.1| helicase [Culex quinquefasciatus]
 gi|167872038|gb|EDS35421.1| helicase [Culex quinquefasciatus]
          Length = 1024

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 84/225 (37%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYYDEEKH--------W 48
           K QRE Y  +  ++I+  N A K          ++  +  N    +D  +          
Sbjct: 370 KMQREWYTKILMKDIDIVNGAGKMEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDWH 429

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
              +  K+  LE ++   +   + +++       L  L+                   + 
Sbjct: 430 LVENSGKMIILEKLLNKLQEQGSRVLIFSQMTRMLDILEDYCHWRGYNYCRLDGQTPHED 489

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 490 RTKMIDEYNAEGSQKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 543

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI +NTI+E +++R   K  +  L++   +
Sbjct: 544 RAHRIGQKKQVRVFRLITENTIEEKIVERAEIKLKLDKLVIQQGR 588


>gi|291401180|ref|XP_002716976.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5-like [Oryctolagus cuniculus]
          Length = 1051

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 583

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 584 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 635


>gi|114596229|ref|XP_001144412.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 3 [Pan troglodytes]
          Length = 936

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 294 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 353

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 354 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 413

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 414 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 468

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 469 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 520


>gi|71014727|ref|XP_758754.1| hypothetical protein UM02607.1 [Ustilago maydis 521]
 gi|46098544|gb|EAK83777.1| hypothetical protein UM02607.1 [Ustilago maydis 521]
          Length = 1108

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 80/223 (35%), Gaps = 39/223 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYYDEEK-------- 46
           + QR+ Y  +  ++I+A N             +  ++  +  N    +D  +        
Sbjct: 461 EMQRKWYKSILEKDIDAVNGGVGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 520

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
                +  K+  L+ ++ K     + +++    +  L                   G   
Sbjct: 521 EHLVDNSGKMVILDRLLHKMKQKGSRVLIFSQMSRMLDILEDYCLFREYKYCRIDGGTAH 580

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     I E+N+      +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 581 DDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQA 634

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + R  + G  + V+V+  + ++ I+E +L R   K  +  L++
Sbjct: 635 MDRAHRIGQTKQVYVFRFVTEHAIEERILDRAAQKLRLDQLVI 677


>gi|14028669|gb|AAK52454.1|AF325921_1 DNA-dependent ATPase SNF2H [Mus musculus]
          Length = 1051

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 409 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 468

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K    ++ +++       L  L+             
Sbjct: 469 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQSSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 528

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 529 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 583

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 584 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 635


>gi|296195484|ref|XP_002745366.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 1
           [Callithrix jacchus]
          Length = 1052

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 410 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 470 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 529

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 530 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 585 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636


>gi|157817975|ref|NP_001100889.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Rattus norvegicus]
 gi|149037939|gb|EDL92299.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 (predicted), isoform
           CRA_a [Rattus norvegicus]
          Length = 995

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 579


>gi|146299520|ref|YP_001194111.1| non-specific serine/threonine protein kinase [Flavobacterium
           johnsoniae UW101]
 gi|146153938|gb|ABQ04792.1| Non-specific serine/threonine protein kinase [Flavobacterium
           johnsoniae UW101]
          Length = 966

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 21/210 (10%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y + +   R       G   +  +  +  +K  QL+N     D+E          +  
Sbjct: 747 KLYEQEKSKARNFLLKTDGSGPDKISIINTLMKLRQLSNHPKMVDQESEIDSGKYIAVTN 806

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK 108
               + KA    +I+   F ++L        + +             K    ++ + E +
Sbjct: 807 YLENLVKA-KQKVIIFSSFVTNLNFYTDWCKENKITYCEITGETPAAKREQQVKLFQEKE 865

Query: 109 IPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            PL  F    + G GLN+    + ++F   WW+        E+ GV R  + G    V V
Sbjct: 866 EPLLFFISLKAGGVGLNITK-ASYVLFLDPWWNP-----FAEKQGVGRAHRIGQLNKVNV 919

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              I++NT++E +++    K  + D LL  
Sbjct: 920 VRFISKNTVEEKIIKLQENKKLLSDSLLEE 949


>gi|37590263|gb|AAH59235.1| Ino80 protein [Mus musculus]
          Length = 1088

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 615 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 674

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 675 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 733

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 734 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 783


>gi|320170047|gb|EFW46946.1| helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1078

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH--------WKEVHD 53
           + Y     +    +   N      ++  ++  +  N    +D  +               
Sbjct: 420 EVYQGILLKDLDVVNSGNANKVRLSNILMQLRKCCNHPYLFDGTEPGPPYTTDKHLLDAC 479

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTI 101
            K+  L+ ++   +A  + +++       L  L+                   +     I
Sbjct: 480 GKMSVLDKLLPKLQAQGSRVLIFSQMTRMLDILEDYCMWRGHTYCRLDGQTDHEDRARMI 539

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            E+N       L      + G G+NL Y  + ++ +   W+ +     ++     R  + 
Sbjct: 540 DEYNAPNSSKFLFLLSTRAGGLGINL-YTADTVILYDSDWNPQ-----MDLQAQDRAHRI 593

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V ++  + +NT++E +++R   K  +  +++   +
Sbjct: 594 GQKKQVRIFRFVTENTVEERIIERAEMKLRLDAMVIQQGR 633


>gi|307209151|gb|EFN86289.1| DNA excision repair protein ERCC-6 [Harpegnathos saltator]
          Length = 1005

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 63/208 (30%), Gaps = 36/208 (17%)

Query: 26  ASKTVKCLQLANGAVYY-------------------DEEKHWKEVHDEKIKALEVIIEKA 66
                   ++ N    +                   ++  +WK      +    + I + 
Sbjct: 556 LIALSALRKICNHPDLFLYTRQLDSEEDIDLSEELLEKFGYWKRAGKMTVVRSLLKIWQK 615

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE-GKIPLLFAH 115
               +++       +  L+                  + +    IQ +N      +    
Sbjct: 616 QGHRVLLFTQGIQMIHILESLLQHEGYTYLRLDGSTAMSQRQHVIQMFNNNPSYFVFLLT 675

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G GLNL  G N ++ +   W+        +     R  + G  + V +Y LI   T
Sbjct: 676 TRVGGLGLNLT-GANRVIIYDPDWNPAT-----DAQARARAWRIGQNKQVTIYRLITAGT 729

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I+E +  R   K  + + +L+  ++  +
Sbjct: 730 IEEKMYHRQIFKLLLSNKVLDEPRQRRL 757


>gi|326334483|ref|ZP_08200694.1| Snf2 family helicase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693252|gb|EGD35180.1| Snf2 family helicase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 950

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 28/221 (12%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y + +   R     +   +    N  +      Q++N     D       +   K + 
Sbjct: 733 KWYEREKSKVRNKLLHIDNHSQT-LNILNMLTLLRQISNHPKLLD---KQSSIPSGKYEE 788

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWN 105
           +  ++E+   +    ++   F S L   +                    ++         
Sbjct: 789 VINLLEQLLLSQHKALIFSSFISHLEIYEDWCKTNNIKFTTLTGDTPIPERKIQVESFQK 848

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I   F    +   GLNL    + ++    WW+        ER  + R  + G +  V
Sbjct: 849 DKDIMFFFISLKAGEVGLNLTT-ASYVLLLDPWWNP-----FAERQAIARAHRLGQQHKV 902

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            V   + Q+T++E ++   + K  + + ++    L KE + 
Sbjct: 903 TVIRFVTQDTLEEKIIHLQQNKKELSENIIEENVLVKEVLE 943


>gi|11035016|gb|AAG01537.2|AF292095_1 imitation switch ISWI [Xenopus laevis]
          Length = 1046

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH- 47
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 403 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 462

Query: 48  -------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + I++       L  L+             
Sbjct: 463 PPYTTDLHLATNSGKMMVLDKLLPKLKEQDSRILIFSQMTRVLDILEDYCMWRNYEYCRL 522

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 523 DGQTPHEERQESIIAYNAPGSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 577

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 578 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 629


>gi|326918376|ref|XP_003205465.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like
           [Meleagris gallopavo]
          Length = 1020

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKT---------VKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 377 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPG 436

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 437 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 496

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 497 DGQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 551

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 552 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 603


>gi|148678936|gb|EDL10883.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Mus musculus]
          Length = 993

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 351 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 410

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 411 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 470

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 471 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 525

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 526 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 577


>gi|207340928|gb|EDZ69127.1| YOR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 824

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA----SKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            Y +  +     +  +N +         ++ ++  ++ N    ++E +            
Sbjct: 143 MYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDD 202

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ I+ K       +++ +     +  ++                   D+
Sbjct: 203 IWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDE 262

Query: 97  DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 263 RSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 316

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E++L+R   K  I   ++ A K
Sbjct: 317 RAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGK 361


>gi|126342338|ref|XP_001373609.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a, member 1,
           [Monodelphis domestica]
          Length = 1010

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 365 VKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 424

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+ AL+ ++ K     + +++       L  L+             
Sbjct: 425 PPYTTDTHLVNNSGKMVALDKLLSKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 484

Query: 92  ---RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 485 DGQTPHEEREEAIDTFNAPNSTKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 539

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI  NT+++ +++R   K  +  +++   +
Sbjct: 540 -VDLQAMDRAHRIGQKKPVRVFRLITDNTVEDRIVERAEIKLRLDSIVIQQGR 591


>gi|115633814|ref|XP_780898.2| PREDICTED: similar to excision repair protein, partial
           [Strongylocentrotus purpuratus]
          Length = 973

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 42/232 (18%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----------------- 42
           + Y ++   +E    L+GE    +   +  +   ++ N                      
Sbjct: 283 QVYEEYLASKECNLILRGE----YKVFAGLITLRKICNHPDLVSGGPRIFSHQNLSDEDL 338

Query: 43  -DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--- 96
            +E+++       K+  +E ++   K     +++       L  ++       +  +   
Sbjct: 339 TEEQRYGYYKRAGKMIVVESLLKLWKEQNHRVLLFSQSKQMLDIMEDFVKDRYSYMRMDG 398

Query: 97  ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I ++N + +I L        G G+NL  G N ++ +   W+        +
Sbjct: 399 TTTISSRQPLITKFNSDPRIFLFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----D 452

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G  + V +Y L+   +I+E +  R   K+ + + +L   ++ 
Sbjct: 453 TQARERSWRIGQTKQVTIYRLLTAGSIEEKIYHRQIFKTFLTNRVLKDPRQR 504


>gi|296082077|emb|CBI21082.3| unnamed protein product [Vitis vinifera]
          Length = 1356

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           + Y       Y  L        +  +  ++  +L       +  +   E           
Sbjct: 546 EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDATEAYKLLLE 605

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K++ L+ ++ K       +++   F   L  L+      +   +             
Sbjct: 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 665

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 666 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 719

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 720 RLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNIN 766


>gi|50310529|ref|XP_455284.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644420|emb|CAG97992.1| KLLA0F04521p [Kluyveromyces lactis]
          Length = 1344

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVH---- 52
           + Y +  +     +      A  +      +K ++  ++ N    +DE ++         
Sbjct: 767 QLYEQMLKHNAFFIGAGTEGATKAGIKGLNNKVMQLRKICNHPFVFDEVENVINPTRENS 826

Query: 53  ------DEKIKALEVIIEKA--NAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                   K + L+ ++ K   +   +++ +           F             G   
Sbjct: 827 SILYRVSGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMRDLKYMRLDGGTKA 886

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 887 EDRTGMLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 940

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 941 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 987


>gi|19115773|ref|NP_594861.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe 972h-]
 gi|46397295|sp|Q9UTN6|SNF21_SCHPO RecName: Full=Chromatin structure-remodeling complex subunit snf21;
           AltName: Full=ATP-dependent helicase snf21; AltName:
           Full=RSC complex subunit snf21
 gi|5830480|emb|CAB54824.1| ATP-dependent DNA helicase Snf21 [Schizosaccharomyces pombe]
 gi|42558224|dbj|BAD11105.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Schizosaccharomyces pombe]
          Length = 1199

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH------ 52
           K Y++ ++     ++                ++  ++ N    +++ +   +        
Sbjct: 671 KLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDM 730

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ I+ K   +   I++ +     +  ++                   D 
Sbjct: 731 LWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADD 790

Query: 97  DPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+    +        + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 791 RSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQD 844

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  + V +Y LI + +++E +L R + K  I   ++ A K
Sbjct: 845 RAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGK 889


>gi|321465306|gb|EFX76308.1| RAD54, DNA repair and recombination protein [Daphnia pulex]
          Length = 748

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 42/228 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------------------- 44
              + ++    +  +  +  + +      +L +      E                    
Sbjct: 431 EAVKSKMREANEKPSKSSMTALAAITNLKKLCSHPELVYEKCQSGVDGFEGTLSLFPATF 490

Query: 45  -EKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ---------- 90
             +  +     K+  L+ I+          I++  ++   L   +K              
Sbjct: 491 DPRKLQTELSGKLCVLDCILAMVKSTTNDKIVLISNYTQTLDLFEKLCRMRSYPCVRLDG 550

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    ++ +N+      +      + G GLNL  G N LV F   W+        
Sbjct: 551 SMSIKKRAKIVEHFNDPASSDFVFLLSSKAGGCGLNL-IGANRLVMFDPDWNPAN----- 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K+  F+Y L++  TI+E + QR   K  +   +++
Sbjct: 605 DDQAMARVWRDGQKKPCFIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 652


>gi|171686770|ref|XP_001908326.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943346|emb|CAP68999.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1395

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++           
Sbjct: 818  RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPMSVSNDL 877

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K       +++ +   + +  ++                     
Sbjct: 878  LWRTAGKFELLDRILPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 937

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 938  RSDLLRDFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 991

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 992  RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 1036


>gi|83286649|ref|XP_730253.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489925|gb|EAA21818.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 1350

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 75/216 (34%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    +           +  ++  +  N    +D  +    +          
Sbjct: 489 KLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 548

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   K   + +++       L  +                    D+    I 
Sbjct: 549 KMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRIDGSTVGDERQIRIN 608

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G
Sbjct: 609 KFNEPNSKYFIFLLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIG 662

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K+ V VY  + QN+++E +++R   K  +  L++ 
Sbjct: 663 QKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQ 698


>gi|149023010|gb|EDL79904.1| rCG26684 [Rattus norvegicus]
          Length = 1032

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL++++   K+    +++       +  L++       
Sbjct: 559 NGWSFIRIPGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 618

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 619 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 677

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 678 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 727


>gi|68483751|ref|XP_714234.1| hypothetical protein CaO19.607 [Candida albicans SC5314]
 gi|46435782|gb|EAK95157.1| hypothetical protein CaO19.607 [Candida albicans SC5314]
 gi|238880196|gb|EEQ43834.1| hypothetical protein CAWG_02085 [Candida albicans WO-1]
          Length = 1055

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           + Y  F +    DL+       N         ++ N       +   K           K
Sbjct: 557 ELYESFLQS--EDLESILKGKRNVLMGVDILRKICNHPDLVYRDTLMKRKNYGDPAKSGK 614

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKD 97
           ++ L+ ++   ++     ++       L  L+K                       + K 
Sbjct: 615 MQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKR 674

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N +  + +        G G+NL  G + ++ +   W+        +     R 
Sbjct: 675 QMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQARERA 728

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 729 WRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 773


>gi|255718303|ref|XP_002555432.1| KLTH0G09196p [Lachancea thermotolerans]
 gi|238936816|emb|CAR24995.1| KLTH0G09196p [Lachancea thermotolerans]
          Length = 1308

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVHDE-- 54
           + Y +  +            A         +K ++  ++ N    +DE +          
Sbjct: 715 QLYQQMLKHNALFFGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGIINPTRGNS 774

Query: 55  --------KIKALEVIIEKAN--AAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                   K + L+ I+ K       +++ +           F                 
Sbjct: 775 PLLYRVAGKFELLDRILPKFKATGHRVLMFFQMTQVMDIMEDFLRMRDLKYLRLDGATKT 834

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 835 EERTGMLKLFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 888

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 889 QDRAHRIGQKNEVRILRLITTDSVEEVILERALQKLDIDGKVIQAGK 935


>gi|296195486|ref|XP_002745367.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 2
           [Callithrix jacchus]
 gi|296195488|ref|XP_002745368.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5 isoform 3
           [Callithrix jacchus]
          Length = 995

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 579


>gi|260942759|ref|XP_002615678.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
 gi|238850968|gb|EEQ40432.1| hypothetical protein CLUG_04560 [Clavispora lusitaniae ATCC 42720]
          Length = 1563

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--- 54
            K Y    +       G          N+ ++ ++  ++ N    Y+E ++      E   
Sbjct: 960  KLYRMMLKYNALFTGGGTGQKPNTIKNANNQLMQLRKICNHPFVYEEVENLINPQAETND 1019

Query: 55   ---KIKALEVII------EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLD 95
               ++     ++       K     +++ +     +                   G   D
Sbjct: 1020 TIWRVAGKFELLDRVLPKFKKTGHRVLLFFQMTQIMDIMEDFLRLRGMKYMRLDGGTKAD 1079

Query: 96   KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +NE             + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1080 DRTYLLNLFNEPNSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQ 1133

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++I+E+VL+R   K  I   ++ A K
Sbjct: 1134 DRAHRIGQKNEVRILRLITEDSIEEMVLERAVAKLEIDGKVIQAGK 1179


>gi|323144713|ref|ZP_08079295.1| SNF2 family N-terminal domain protein [Succinatimonas hippei YIT
            12066]
 gi|322415530|gb|EFY06282.1| SNF2 family N-terminal domain protein [Succinatimonas hippei YIT
            12066]
          Length = 1337

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDE-EKHWKEVHDEKIKALE 60
             Y     E    L  +      N  +      Q+ +    YDE   H K     K  A+ 
Sbjct: 1110 LYQAKLDESLNKLSSDVKSKMINVITTINALKQICDSPAVYDEGNSHNKPEDSGKSVAVL 1169

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQ-EWNE 106
             ++E         I+   +      L++                 TL +    I    N+
Sbjct: 1170 DLLENILDQGKKTIIFTQYLKMGYLLKQYIKDKFAIDADFLTGETTLKERQNMIDSFQND 1229

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G G+NL    ++++ F LWW+       +E     R  + G  + V 
Sbjct: 1230 PDKSILILSLKAGGSGINLTA-ASVVIHFDLWWNPA-----VENQATDRAYRIGQNKTVQ 1283

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VY ++   T++E +   L  K  + +L +   ++
Sbjct: 1284 VYRMLCSGTLEENIDATLSMKKELNELTVKENER 1317


>gi|260494465|ref|ZP_05814595.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
 gi|260197627|gb|EEW95144.1| LOW QUALITY PROTEIN: SWF/SNF family helicase [Fusobacterium sp.
           3_1_33]
          Length = 683

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
           E        N       +   K  Q+        E+         KI A   +I+K   N
Sbjct: 473 ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED---ISSSSSKINACIELIKKSIEN 529

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPA 117
              I++   F + L  + +                   K    ++++    +PL      
Sbjct: 530 KQRILLFSSFTTVLDLVAQECDNLSIPYFILTGETNKIKRNQLVEDFQNEAVPLFLISLK 589

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    ++++    WW++             R  + G +  V V+ LI +NTI+
Sbjct: 590 AGGTGLNLTK-ASVVIHLDPWWNISAQ-----NQATDRAHRIGQEDTVQVFNLITKNTIE 643

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           E +L     K  + D+ +   K 
Sbjct: 644 EKILNLQNKKKELSDIFVENSKG 666


>gi|296328143|ref|ZP_06870674.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296154655|gb|EFG95441.1| Snf2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 225

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                 +   K  Q+        E+         KI A   +IEK   N   I++   F 
Sbjct: 26  NKIEVLAMLTKLRQICIDPRSLYED---VSSSSSKINAYIELIEKSIENNQKILLFSSFT 82

Query: 79  SDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
           + L                        K    ++ +    +PL      + G GLNL   
Sbjct: 83  TVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQNEAVPLFLISLKAGGTGLNLTK- 141

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            ++++    WW++      ++     R  + G +  V ++ LI +NTI+E +L     K 
Sbjct: 142 ASVVIHLDPWWNIS-----VQNQATDRAHRIGQEDTVQLFNLITKNTIEEKILNLQSKKK 196

Query: 189 TIQDLLLNALKK 200
            + D+ +   K 
Sbjct: 197 ELSDIFVENSKG 208


>gi|255548778|ref|XP_002515445.1| chromodomain helicase DNA binding protein, putative [Ricinus
           communis]
 gi|223545389|gb|EEF46894.1| chromodomain helicase DNA binding protein, putative [Ricinus
           communis]
          Length = 1470

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 75/227 (33%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           + Y       Y  L        +  +  ++  +L       +  +   +           
Sbjct: 543 EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDSNESFRQLVE 602

Query: 53  -DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K++ L+ ++   K     +++   F   L  L+      +   +             
Sbjct: 603 SSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 662

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 663 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 716

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 717 RLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNIN 763


>gi|224143281|ref|XP_002324903.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222866337|gb|EEF03468.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1334

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L        +  +  ++  +L       +  +   E  +E       
Sbjct: 547 EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLVE 606

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
                ++    ++  K     +++   F   L  L+      +             +   
Sbjct: 607 TSGKLQLLHKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWTYERIDGKVGGAERQI 666

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 667 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 720

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 721 RLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNIN 767


>gi|326426853|gb|EGD72423.1| transcription activator [Salpingoeca sp. ATCC 50818]
          Length = 1106

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEK-- 46
           +K Y    K QR+ Y ++  ++I+  N           +  ++  +  N    +D  +  
Sbjct: 464 IKVYVGMSKMQRDWYKNILMKDIDTINGAGRVEKMRLLNILMQLRKCCNHPYLFDGAEPG 523

Query: 47  ------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K  A  + +++       L  L+             
Sbjct: 524 PPFTTDQHLVDNSGKLVVLDKLLTKLKAQGSRVLIFSQMTRMLDILEDYSWWRGHKYCRL 583

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I ++N       +      + G G+NL Y  ++++ +   ++ +    
Sbjct: 584 DGSTAHEIRGEMIDDFNRPNSDKFMFLLSTRAGGLGINL-YTADVVIIYDSDFNPQ---- 638

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++     R  + G  + V V+  I + T++E +++R   K  +  +++   +
Sbjct: 639 -MDLQAQDRAHRIGQTKEVRVFRFITEKTVEERIVERAEMKLRLDAVVIQQGR 690


>gi|221046276|dbj|BAH14815.1| unnamed protein product [Homo sapiens]
          Length = 995

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 579


>gi|297293444|ref|XP_001093597.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 5-like isoform
           2 [Macaca mulatta]
          Length = 995

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 579


>gi|297482338|ref|XP_002692716.1| PREDICTED: kismet-like [Bos taurus]
 gi|296480623|gb|DAA22738.1| kismet-like [Bos taurus]
          Length = 2935

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1161 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1220

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1221 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1280

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1281 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1337

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1338 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1390


>gi|194672930|ref|XP_612494.4| PREDICTED: kismet-like [Bos taurus]
          Length = 2940

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1166 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1225

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1226 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1285

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1286 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1342

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1343 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1395


>gi|194380928|dbj|BAG64032.1| unnamed protein product [Homo sapiens]
          Length = 995

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 353 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 412

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 413 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 527

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 528 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 579


>gi|66801511|ref|XP_629681.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60463108|gb|EAL61303.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2129

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
               K++ L+ +++  K     +++   F   +  L+                 +  D+  
Sbjct: 1765 DSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRD 1824

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  ++  I        +CG G+NL    + ++F+   W+       ++     R  +
Sbjct: 1825 MVDDFQSDPSIFAFLLSTRACGIGINLTS-ADTVIFYDSDWNPT-----VDEQAQDRAHR 1878

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G  R V VY LI +NTI+E +L+R + K  IQ +++   K E
Sbjct: 1879 LGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFE 1921


>gi|323455077|gb|EGB10946.1| hypothetical protein AURANDRAFT_62321 [Aureococcus anophagefferens]
          Length = 1218

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 25  SASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIKALEVIIE--KANAAPIIVA 74
             +  ++  +  N    +                    K+  L+ ++   K     +++ 
Sbjct: 404 VLNLVMQLRKCCNHPYLFPNVEDRSLPVLGEHLVGACGKLVLLDKLLTRLKDKGHRVLIF 463

Query: 75  YHFNSDLAR---------LQKAFPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHG 122
                 L                  G+T  +     I  +N              + G G
Sbjct: 464 SQMTRMLDILEDFMVMRAYDYCRIDGKTAHELREEYIDAYNAPNSEKFAFLLSTRAGGLG 523

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ     +  +   W+ +      +   + R  + G  + V VY L+ +++++E V++
Sbjct: 524 INLQTADTCV-LYDSDWNPQA-----DLQAMDRCHRIGQTKPVHVYRLVTEHSVEEKVVE 577

Query: 183 RLRTKSTIQDLLLNAL 198
           R + K  +  ++ + L
Sbjct: 578 RAQQKLKLDAVVTDEL 593


>gi|323490931|ref|ZP_08096126.1| ATP-dependent helicase [Planococcus donghaensis MPA1U2]
 gi|323395411|gb|EGA88262.1| ATP-dependent helicase [Planococcus donghaensis MPA1U2]
          Length = 907

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 66/214 (30%), Gaps = 25/214 (11%)

Query: 3   QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHW----KEVHDEKI 56
            Y    ++    ++      +         K  QL N    Y +E +          +K+
Sbjct: 680 LYEGLVQDTVQKMETLTGFEKKGLVLKMLSKLKQLCNHPSLYLKEPYTNAAEILPRSQKL 739

Query: 57  KAL-------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
           + +              +I  +      I+    N                 +    + +
Sbjct: 740 ERIVTLAGEIAERGEQCLIFTQYIGMGHILQQAINELYGHEVPFLTGSMPKQQRDSLVAQ 799

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  GK P+      + G GLNL      ++    WW+       +E     R  + G  +
Sbjct: 800 FQAGKFPIFILSLKAGGTGLNLTA-ATHVLHADRWWNPA-----VENQATDRAYRIGQTQ 853

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+  +   TI+E +   L  K ++ +  + +
Sbjct: 854 FVHVHKFVTIGTIEEKIDSLLVQKQSMSEEFIQS 887


>gi|302837688|ref|XP_002950403.1| hypothetical protein VOLCADRAFT_74566 [Volvox carteri f.
           nagariensis]
 gi|300264408|gb|EFJ48604.1| hypothetical protein VOLCADRAFT_74566 [Volvox carteri f.
           nagariensis]
          Length = 684

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 46/218 (21%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------------VHDEKIKA 58
           + +  +      +L +      +                              H  K+ A
Sbjct: 379 SPHVFASLQYLRKLCSHPAMVMDLGLAAHRAAATAVLRTNEPAGVEAALRRLKHSPKLAA 438

Query: 59  LEVIIEKA-----NAAPIIVAYHFNS--DLARLQKAFPQGRTLDK---------DPCTIQ 102
           L  ++        +   ++V     S  D+       P G +  +             +Q
Sbjct: 439 LRDLLATCGGGNSSGHRMLVFAQHKSLLDIVERDLMAPYGVSYLRLDGSVEAGARFGIVQ 498

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N +  I +L       G GLNL    + +VF    W+  +         + R  + G 
Sbjct: 499 RFNSDPTIDVLLLTTGVGGVGLNLTS-ADTVVFLEHDWNPMKDM-----QAMDRAHRLGQ 552

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +R V VY ++ + T++E V+   + K  +   ++NA  
Sbjct: 553 RRTVNVYRILTRGTLEERVMGLQQFKIDVAAAVVNADN 590


>gi|154299240|ref|XP_001550040.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
 gi|150857501|gb|EDN32693.1| hypothetical protein BC1G_11798 [Botryotinia fuckeliana B05.10]
          Length = 1433

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            + Y +          D +G    A   ++  ++  +L N    + E +            
Sbjct: 796  RLYKQMVTHNKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFREVEDQMNPTGYINDS 855

Query: 52   ---HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K       +++ +   + +  + +                  D 
Sbjct: 856  LWRSAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMGEFLDYRGIKFMRLDGTTKSDD 915

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 916  RSLLLKEFNAPNSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 969

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A +
Sbjct: 970  RAHRIGQKNEVRILRLISSNSVEEKILERAKFKLDMDGKVIQAGR 1014


>gi|261368900|ref|ZP_05981783.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282568998|gb|EFB74533.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 811

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 20/191 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFN 78
           A           +     +  D+  + + V D        I+      +   I++  ++ 
Sbjct: 612 APVVLKGLTLLRECCCHPLLLDDTINVEGVVDSCKLDALKILVADLFESGHKILIFSNYT 671

Query: 79  SDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
           S L  +++            F       +    ++++ +    +      + G GLNL  
Sbjct: 672 SMLHLIRQELEKRSEYKANLFYLDGKTQQRNLLVEQFEKASAGIFLISIKAGGVGLNLTS 731

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               ++ +  WW+    QQ I+R       + G ++AV VY L+A NTI+E +L   + K
Sbjct: 732 -AQDVIIYDPWWNPFVEQQAIDR-----AYRIGQQQAVNVYKLVAANTIEEKILDMQKDK 785

Query: 188 STIQDLLLNAL 198
               + L+N +
Sbjct: 786 EQDFEELINGI 796


>gi|187934940|ref|YP_001886534.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
 gi|187723093|gb|ACD24314.1| imitation switch iswi [Clostridium botulinum B str. Eklund 17B]
          Length = 1050

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 25/218 (11%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   L+            +   +  QL        E+         KI   
Sbjct: 827  KIYKMYVKDIQDKLKQIDSRNNRIAIFAYLTRLRQLCLDPSIIVEDYD---GGSGKINVA 883

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
            + +I+K   N   I++   F S L                        +      E+N  
Sbjct: 884  KELIKKSIKNNHKILLFSQFTSVLHKVCDELKGEQISYLYLDGSTPSKERIRLTHEFNNN 943

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    ++++ F  WW+       IE     R  + G K  V 
Sbjct: 944  EDIKIFLISLKAGGTGLNLTS-ADMVIHFDPWWNPA-----IEDQATDRAHRIGQKNVVQ 997

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKETI 203
            V  LI + +I+E +L     K  + + ++   L+ E +
Sbjct: 998  VIKLITKESIEEKILLLQEDKKALIEDVITGELRDEGL 1035


>gi|108885078|ref|NP_072678.2| SNF2 family helicase putative [Mycoplasma genitalium G37]
 gi|94730430|sp|P47264|Y018_MYCGE RecName: Full=Uncharacterized ATP-dependent helicase MG018
 gi|84626126|gb|AAC71234.2| helicase SNF2 family, putative [Mycoplasma genitalium G37]
 gi|166078676|gb|ABY79294.1| helicase SNF2 family, putative [synthetic Mycoplasma genitalium
            JCVI-1.0]
          Length = 1031

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 23/208 (11%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y K + +   +++  +   A N  S  +K   + +      +        + K  A  
Sbjct: 813  KLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICS---LVKDNDVNDFEDNSKANAAL 869

Query: 61   VIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK 108
             II +   N   +I+   F   +   ++           F   +T+      IQ++N  K
Sbjct: 870  NIIYEALENKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDGRKTVKNRNTIIQKFNSAK 929

Query: 109  IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             P ++ A   + G G+NL     +++ F +WW+       +E     R  + G  + V V
Sbjct: 930  EPCVMLASLKAGGVGINLTA-AEVVIHFDVWWNSA-----VENQATDRAHRIGQSKTVQV 983

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Y +IA+NTI+E V Q    K  +    L
Sbjct: 984  YRIIAKNTIEERVCQVQNQKQELVKKTL 1011


>gi|50548883|ref|XP_501912.1| YALI0C16643p [Yarrowia lipolytica]
 gi|49647779|emb|CAG82232.1| YALI0C16643p [Yarrowia lipolytica]
          Length = 1085

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 30/220 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------YDEEKHWKEVHDEK 55
           Y  F +    +L+        S        ++ N              +  +       K
Sbjct: 579 YKGFLKS--EELKSILAGKRQSLFGIDILRKICNHPDLASREILKKTADYYYGDPAKSGK 636

Query: 56  IKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQ 102
           ++ ++ +  + K      ++       L  L+  F                + K    + 
Sbjct: 637 MQVVKALVDLWKKQGHRTLLFCQTRQMLEILEDFFANMPDIKYLRMDGTTPISKRQDMVD 696

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N +    L        G G+NL  G N ++ F   W+        +     R  + G 
Sbjct: 697 TYNKDTSYDLFLLTTRVGGLGVNLT-GANRVIIFDPDWNPST-----DLQARERSWRLGQ 750

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           KR V VY L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 751 KRNVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDAKQR 790


>gi|241640781|ref|XP_002410926.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503624|gb|EEC13118.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 654

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 33/218 (15%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKI 56
            QRE Y  L   ++      +      +L N      E                    K+
Sbjct: 351 IQREWYDRL--ASMRGGTPLATITLLKKLCNHPSLVRECFPDSGPTFKASTVMPELSGKL 408

Query: 57  ---KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
                L  II       +++  ++   L   ++   +            T+ K    +  
Sbjct: 409 KVLDCLLAIIRSTTDDKVVLISNYTQTLDVFERLCRERGYGFFRLDGSMTIKKRAKIVAA 468

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N    P         + G GLNL  G N LV F   W+        +   + R  + G 
Sbjct: 469 FNVPSSPEFAFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DAQAMARIWRDGQ 522

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           K+  +VY L++  +I+E +LQR   K  +   ++++ +
Sbjct: 523 KKPCYVYRLVSSGSIEEKILQRQTHKKALSSCVVDSEE 560


>gi|150006238|ref|YP_001300982.1| helicase/SNF2 domain-containing protein [Bacteroides vulgatus ATCC
           8482]
 gi|149934662|gb|ABR41360.1| helicase with SNF2 domain [Bacteroides vulgatus ATCC 8482]
          Length = 762

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 20/205 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLA-NGAVYYDEEKHWKEVHDEKIKA 58
           + Y K ++     +         S +    ++  Q   N ++          +   K   
Sbjct: 545 EIYSKVRKTFLLAMSDGTSGRLTSIALEGLLRLRQCCVNTSLLPLSLSGKAIIDSSKFNF 604

Query: 59  LEVIIEKA--NAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEG 107
              +I+        +++   F S L  L K             G T ++        N+ 
Sbjct: 605 AIKLIKDFVSQNHKVLLFSQFTSALELLIKHPKLKELNPLILTGETRNRQTLVNTFQNDP 664

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              ++     + G GLNL    + ++    WW+       +E     R  + G K  V V
Sbjct: 665 SATVMMVSIKAGGTGLNLTA-ADRVILLDDWWNPA-----VESQAFARTHRIGQKNDVKV 718

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQD 192
           Y L+ ++T++E +L+  + K  + +
Sbjct: 719 YRLVCKDTVEEKILELHKNKEEMSE 743


>gi|296138502|ref|YP_003645745.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
 gi|296026636|gb|ADG77406.1| SNF2-related protein [Tsukamurella paurometabola DSM 20162]
          Length = 1081

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 22/208 (10%)

Query: 4    YHKFQRELYCDL----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y +   +    L       +   F          +LA      DEE   ++V   K+  L
Sbjct: 863  YDRILADQRAKLLGLLDDFDGNRFEILRSLTMLRRLALDPSLVDEELAVEDV--AKLDYL 920

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNEGKI 109
               +++       ++V   F   L +          +      +       I+++  G++
Sbjct: 921  AEKLDELLEEKHAVLVFSQFTGFLRKAAERLDEEGVEYAYLDGSTTDRAAAIEKFTSGEV 980

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    +       WW+        E   + R  + G  R+V VY 
Sbjct: 981  QVFLISLKAGGFGLNL-VQADYCFLLDPWWNPAA-----EAQAIDRAHRIGQTRSVMVYR 1034

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L++  TI++ V++    K+ + + ++  
Sbjct: 1035 LVSAGTIEDKVMELKERKAALFESVVGG 1062


>gi|157103787|ref|XP_001648130.1| helicase [Aedes aegypti]
 gi|108880485|gb|EAT44710.1| helicase [Aedes aegypti]
          Length = 1027

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QRE Y  +  ++I+  N A K          ++  +  N    +            + 
Sbjct: 379 KMQREWYTKILMKDIDIVNGAGKMEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 438

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
              +  K+  L+ ++   +   + ++V       L  L+                   + 
Sbjct: 439 LLENSGKMVVLDKLLTKLQEQGSRVLVFSQMTRMLDILEDYCYWRGYQYCRLDGQTPHED 498

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 499 RTKMIDEYNAENSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 552

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 553 RAHRIGQKKQVRVFRLITENTVEEKIVERAEIKLKLDKLVIQQGR 597


>gi|148266412|ref|YP_001233118.1| non-specific serine/threonine protein kinase [Geobacter
            uraniireducens Rf4]
 gi|146399912|gb|ABQ28545.1| Non-specific serine/threonine protein kinase [Geobacter
            uraniireducens Rf4]
          Length = 1164

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 63/184 (34%), Gaps = 18/184 (9%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
            + +  ++  Q+   A         +    E +    + +        +V   F S L  +
Sbjct: 968  ALTAILRLRQICLSAALVTAGVKGESPKQECLADNLLELRD-EGHSALVFSQFTSYLDLV 1026

Query: 85   QKAFPQ----------GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILV 133
            ++   Q             + +    ++++ + + P +      + G GLNL      + 
Sbjct: 1027 EEGLKQRGLATLRLDGSTPVPRRKELVRQFQQSEEPLVFLISLKAGGKGLNLTR-ATYVY 1085

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                WW+       +E     R  + G    V V  L+ ++T++E ++     K  +   
Sbjct: 1086 HLDPWWNPA-----VENQASDRAHRIGQTAQVTVNRLLMRHTVEEKMMALKERKLKLYRA 1140

Query: 194  LLNA 197
            LL+ 
Sbjct: 1141 LLDD 1144


>gi|115371958|ref|ZP_01459270.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115370923|gb|EAU69846.1| helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 857

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y   +      L+   E  + F   +   +   LA     +DE+     +   K++ +
Sbjct: 635 KLYEAARIASILQLESRTEKDKRFVMLAALTRLRLLACHPKLWDED---SPLPSSKLERM 691

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              +E+  A  +  ++   F   L              +         +    ++ +  G
Sbjct: 692 VERVEELRAEGSRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQARVEAFQRG 751

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GLNL    + ++    WW+       +E     R  + G  R V V
Sbjct: 752 EGDVFLISLKAGGTGLNLTA-ADHVIHLDPWWNPA-----VEDQATDRAHRIGQTRPVTV 805

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+++ TI+E +L     K  +   LL+ 
Sbjct: 806 SRLVSEGTIEEAILALHAEKRELAMSLLSE 835


>gi|298571706|gb|ADI87858.1| hypothetical protein AKSOIL_0350 [uncultured bacterium Ak20-3]
          Length = 918

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
               I   +  +      Q+ N      +  +W++    K +    ++ +   +   I++
Sbjct: 714 DQTPIPYLHVFTVLQLLKQICNHPALIRKTTNWRDGESGKFELFRSLLSEALESNHKIVI 773

Query: 74  AYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              +   +  +Q    +             K    ++++  + ++ +      + G G++
Sbjct: 774 YSQYLQMIEIIQNYLKELKVGHVVLTGKSQKRGDIVKKFQTDPEVKVFVGSLLAGGLGID 833

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    ++++ +  WW+  +     E     R  + G K    V  L+++ T++E + + +
Sbjct: 834 LTA-ASVVIHYDRWWNASK-----ENQATDRVHRIGQKNFTQVIKLVSRGTLEEKIDRMI 887

Query: 185 RTKSTIQDLLLNALKK 200
             K+++ +  L   ++
Sbjct: 888 AEKASLFNRFLERDEE 903


>gi|310824688|ref|YP_003957046.1| snf2/helicase domain-containing protein [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397760|gb|ADO75219.1| SNF2/helicase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1299

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 2    KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y   +      L+   E  + F   +   +   LA     +DE+     +   K++ +
Sbjct: 1077 KLYEAARIASILQLESRTEKDKRFVMLAALTRLRLLACHPKLWDED---SPLPSSKLERM 1133

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
               +E+  A  +  ++   F   L              +         +    ++ +  G
Sbjct: 1134 VERVEELRAEGSRALIFSQFVRLLNLAGEALEARGITFQYLDGQTPAAERQARVEAFQRG 1193

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +      + G GLNL    + ++    WW+       +E     R  + G  R V V
Sbjct: 1194 EGDVFLISLKAGGTGLNLTA-ADHVIHLDPWWNPA-----VEDQATDRAHRIGQTRPVTV 1247

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              L+++ TI+E +L     K  +   LL+ 
Sbjct: 1248 SRLVSEGTIEEAILALHAEKRELAMSLLSE 1277


>gi|115438260|ref|XP_001218021.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
 gi|114188836|gb|EAU30536.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Aspergillus terreus NIH2624]
          Length = 1418

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 796  KLYRQLMTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPTRATNDL 855

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 856  LWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDD 915

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 916  RSDLLKLFNAPGSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 969

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+I+E +L+R + K  +   ++ A K
Sbjct: 970  RAHRIGQKNEVRILRLITSNSIEEKILERAQFKLDMDGKVIQAGK 1014


>gi|47228866|emb|CAG09381.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1286

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 40/234 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYY-------------- 42
           K   + ++     L  + +              +   ++ N    +              
Sbjct: 649 KLTEEQRQVYRSFLDSKEVYQILNRDMQVFPGLIALRKICNHPDLFSGGPQFLRGVPEDQ 708

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAF 88
              E++        K+  +E ++         +++             F  +        
Sbjct: 709 LAQEDRFGFWKRSGKLIVVESLLRLWFRQGQRVLLFTQSRQMLNILEVFVRENNYSYLKM 768

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               ++      I  +N +  I +        G G+NL  G N ++ +   W+       
Sbjct: 769 DGTTSISSRQPLIARYNEDNSIFIFLLTTKVGGLGVNLT-GANRVIIYDPDWNPST---- 823

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     R  + G  + V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 824 -DTQARERAWRIGQTQQVTIYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQR 876


>gi|68483838|ref|XP_714194.1| hypothetical protein CaO19.8240 [Candida albicans SC5314]
 gi|46435735|gb|EAK95111.1| hypothetical protein CaO19.8240 [Candida albicans SC5314]
          Length = 1055

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           + Y  F +    DL+       N         ++ N       +   K           K
Sbjct: 557 ELYESFLQS--EDLESILKGKRNVLMGVDILRKICNHPDLVYRDTLMKRKNYGDPAKSGK 614

Query: 56  IKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKD 97
           ++ L+ ++   ++     ++       L  L+K                       + K 
Sbjct: 615 MQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKR 674

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N +  + +        G G+NL  G + ++ +   W+        +     R 
Sbjct: 675 QMLVDAFNQDPDMHVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQARERA 728

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 729 WRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQR 773


>gi|157375524|ref|YP_001474124.1| non-specific serine/threonine protein kinase [Shewanella sediminis
            HAW-EB3]
 gi|157317898|gb|ABV36996.1| Non-specific serine/threonine protein kinase [Shewanella sediminis
            HAW-EB3]
          Length = 1090

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 52/234 (22%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------------- 50
             + Q+ +   L G        ++  +K  Q+                             
Sbjct: 837  EEVQKAVM--LSGIKRNRLAISNALLKLRQVCCHPQLLKLSHSHISQTEGVTASNDESFQ 894

Query: 51   --------------------VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--- 85
                                    K+  L   +         I++   F S L  +    
Sbjct: 895  SDDVTSFTQESVEQGLTEFATGSGKLNWLADKLPSMLAEGRRILIFSSFTSMLTLIGELL 954

Query: 86   -----KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                                ++ + + ++P+      + G GLNL    ++++    WW+
Sbjct: 955  EQLAVTYVELTGKSRDRASLVKRFQQHEVPVFLISLKAGGAGLNLTA-ADVVIHMDPWWN 1013

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                Q         R  + G  ++VFVY LI ++T++E +     +K ++   +
Sbjct: 1014 PAAEQ-----QASDRAHRIGQDKSVFVYKLICKDTVEERIQLLQESKQSLAQSI 1062


>gi|254518034|ref|ZP_05130090.1| DNA/RNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226911783|gb|EEH96984.1| DNA/RNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 1010

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL- 81
             S   K  QL        ++   +     KIKA++ II++   +   II+   F S L 
Sbjct: 814 ILSYLTKLRQLCLDPSLLIDDFKEE---SAKIKAVKEIIKETIDSNKKIIIFSQFTSVLK 870

Query: 82  ---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                                  +    + E+N     +      + G GLNL    +++
Sbjct: 871 KIGNKLEEDDINYLYLDGSIKAKERINLVDEFNNRDKNIFLISLKAGGVGLNLTS-ASVV 929

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F  WW+              R  + G K  V V  LI+++TI+E +++    K  +  
Sbjct: 930 VHFDPWWNPAVQD-----QATDRAHRIGQKNIVEVIKLISKDTIEEKIIKLQEEKKELIS 984

Query: 193 LLL--NALKKETIH 204
            ++  +AL  ET++
Sbjct: 985 KIIDGDALSGETLN 998


>gi|302697641|ref|XP_003038499.1| hypothetical protein SCHCODRAFT_72893 [Schizophyllum commune H4-8]
 gi|300112196|gb|EFJ03597.1| hypothetical protein SCHCODRAFT_72893 [Schizophyllum commune H4-8]
          Length = 1076

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 81/229 (35%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             QR+ Y  +  ++I+A N  +             ++  ++      +            
Sbjct: 422 DMQRKWYRSVLEKDIDAVNGLTGKKEGKTRLMNMVMQLRKVTCHPYLFDGAEPGPPYTTD 481

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
                +  K+  L+ ++   K   + +++    +  L                   G   
Sbjct: 482 EHLVENCGKMLILDKLLKSMKEKGSRVLIFSQMSRMLDILEDYCLFRGYKYCRIDGGTAH 541

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     I E+N+      +      + G G+NL    +I+V +   W+ +      +   
Sbjct: 542 DDRITAIDEYNKPDSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQA 595

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+V+  I + +++E +L+R   K  +  L++   +++
Sbjct: 596 MDRAHRIGQTKQVYVFRFITEGSVEERMLERAAQKLRLDQLVIQQGRQQ 644


>gi|63991035|gb|AAY40920.1| unknown [Homo sapiens]
          Length = 367

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 40/230 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 143 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 202

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 203 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 262

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 263 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 317

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++ 
Sbjct: 318 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ 366


>gi|328872835|gb|EGG21202.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1993

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 2    KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y   + +    L  E      A    +  V+  ++ N    + +E++  + +  +   
Sbjct: 1245 KMYQLIRSKSVNKLNQEEGAPRLARGLKNTLVQLRKVCNHPYLFYDEEYAIDEYMIRSAG 1304

Query: 59   LEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
               +++K       +   +++       +  L+  F                ++    + 
Sbjct: 1305 KFDLLDKILPKLKASGHRVLIFSQMTHLIDILEHYFTYKGYKYLRLDGSTKSEERGPMLN 1364

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N       +      + G GLNLQ   + ++ F   W+ +     ++     R  + G
Sbjct: 1365 LFNAPGSDLFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRAHRIG 1418

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V V  L+  N+++E +L R   K  +   ++ A
Sbjct: 1419 QKQTVKVLRLVTVNSVEEKILARAIFKKELDKKIIQA 1455


>gi|260815483|ref|XP_002602502.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
 gi|229287813|gb|EEN58514.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
          Length = 700

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 46/234 (19%)

Query: 3   QYHKFQRELY--CDLQGENIEAF--NSASKTVKCLQLANGAVYYDE-------------- 44
            Y    +       L          ++ +   +  +L N      E              
Sbjct: 376 LYKHMVQSKLVQAQLDKSKSGKVTGSAFTAITQLKKLCNHPSLIYEKCLEGDEGLDGALD 435

Query: 45  -------EKHWKEVHDEKIKALEVIIEKANA---APIIVAYHFNSDLARLQKAFPQ---- 90
                   KH +     K+  L+ I+    +     +++  ++   L   +K        
Sbjct: 436 LFPEKYSPKHIQPELSGKMLVLDYILAMTKSKTSDKVVLVSNYTQTLDLFEKLCRSRGYL 495

Query: 91  ------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   T+ K    ++ +N    P  +      + G GLNL  G N LV F   W+  
Sbjct: 496 YVRLDGSMTIKKRAKVVERFNNPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPA 554

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   + R  + G K+  ++Y L+A  TI+E + QR   K  +   +++
Sbjct: 555 N-----DEQAMARVWRDGQKKQCYIYRLLATGTIEEKIFQRQAHKKALSSCVVD 603


>gi|50303907|ref|XP_451901.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641033|emb|CAH02294.1| KLLA0B08327p [Kluyveromyces lactis]
          Length = 1534

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K Y +  +     +       +   +    ++ ++  ++ N    ++E +          
Sbjct: 938  KLYQQMLKHRRLFIFDDSSNQKFSSSRGFNNQIMQLRKICNHPFVFEEVEDQINPARETN 997

Query: 52   -----HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                    K + LE I+ K       +++ +     +  ++                   
Sbjct: 998  DTIWRSAGKFELLERILPKFKATGHRVLIFFQMTQVMDIMEDFLRYLDMKYLRLDGHTKS 1057

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     +  +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1058 DDRTALLNTFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1111

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI  N+++E +L +   K  I   ++ A K
Sbjct: 1112 QDRAHRIGQKNEVRILRLITDNSVEEAILDKAHAKLDIDGKVIQAGK 1158


>gi|189190036|ref|XP_001931357.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972963|gb|EDU40462.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1760

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 25/200 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIEK--ANA 68
            L+ +   A  + +   K  Q  N    +   +            K+  L+ ++++  AN 
Sbjct: 1447 LEAKTESA--ALTVCNKLPQPTNERTRFTHIEAPSMSRFVTDSGKLAQLDALLKELKAND 1504

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPA 117
              +++ +     +  +++                    +        ++  I +      
Sbjct: 1505 HRVLLYFQMTRMMDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDRSIFVFLLSTR 1564

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+       I+   + R  + G  R V VY LI + TI+
Sbjct: 1565 AGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRLGQTRQVTVYRLITRGTIE 1618

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E + +R   K  +Q ++++ 
Sbjct: 1619 ERIRKRALQKEEVQRVVISG 1638


>gi|146412556|ref|XP_001482249.1| hypothetical protein PGUG_05269 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 593

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYC-----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
           K Y +  +         D  G+ I   N+ ++ ++  ++ N    Y+E ++         
Sbjct: 244 KLYQQMLKYNLLFSSNPDGDGKPIAIKNTNNQIMQLRKICNHPFVYEEVENMINPTADTN 303

Query: 54  -------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTL 94
                   K + L+ I+ K       +++ +     +  +                    
Sbjct: 304 DEIWRVAGKFELLDRILPKLKATGHRVLIFFQMTLIMNIMEDFLRLRDLKYMRLDGATKA 363

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D     ++ +NE             + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 364 DDRTGLLKLFNEENSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQA 417

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 418 QDRAHRIGQKNEVRIIRLITEDSVEEMILERAHAKLEIDGKVIQAGK 464


>gi|148228303|ref|NP_001083868.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus laevis]
 gi|49899007|gb|AAH76715.1| ISWI protein [Xenopus laevis]
          Length = 1046

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH- 47
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 403 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 462

Query: 48  -------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 463 PPYTTDLHLATNSGKMMVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 522

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 523 DGQTPHEERQESIIAYNAPGSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 577

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 578 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 629


>gi|260802348|ref|XP_002596054.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
 gi|229281308|gb|EEN52066.1| hypothetical protein BRAFLDRAFT_202887 [Branchiostoma floridae]
          Length = 791

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ-----GRT 93
            +       +  K++ L  ++     +     I+V  ++   L  +Q  +          
Sbjct: 516 YDPNSSSPEYSGKLQVLADLLGSLYSEGPRERIVVVSNYTQTLDMVQVRYGYLRLDGSTP 575

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K    ++ +N+      +      + G GLNL  G + LV + + W+        +  
Sbjct: 576 TGKRQQIVERFNDKYCRDFVFLLSTKAGGVGLNL-IGASRLVLYDIDWNPAN-----DLQ 629

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  + G  R V +Y LI   TI+E + QR  +K  +   +++A
Sbjct: 630 AMARVWRDGQPRVVHIYRLITTGTIEEKIYQRQISKQGLSGAVVDA 675


>gi|123123061|emb|CAM19309.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 768

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 472 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 531

Query: 98  ---------------------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I  +N       +      + G G+NL    ++++ 
Sbjct: 532 DGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 590

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 591 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 645

Query: 195 LNALK 199
           +   +
Sbjct: 646 IQQGR 650


>gi|320164135|gb|EFW41034.1| smarca2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1466

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 36/201 (17%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH----------------DEKIKALEVIIEKAN--AAP 70
             ++  ++ N    ++  +     H                  K +  + ++ K +     
Sbjct: 866  LMQLRKICNHPFLFETLERGVSRHMGFGGAIITGSLVVRASGKFEMFDRLLTKLHRTGHR 925

Query: 71   IIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPL--LFAHPAS 118
            +++       L  L+                   D+    + ++N    P         +
Sbjct: 926  VLLFSQMTQCLTILEDYCNYNNILYLRLDGNTKPDERAELLTKFNAPNSPYNLFLLSTRA 985

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNLQ   + +V F   W+  +     +     R  + G K  V V   +  ++++E
Sbjct: 986  GGLGLNLQT-ADTVVIFDSDWNPHQ-----DLQAQDRAHRIGQKNEVRVIRFVTADSVEE 1039

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L   + K  +   ++ A K
Sbjct: 1040 RMLAAAQFKLDMDKKVIQAGK 1060


>gi|302816250|ref|XP_002989804.1| hypothetical protein SELMODRAFT_428350 [Selaginella moellendorffii]
 gi|300142370|gb|EFJ09071.1| hypothetical protein SELMODRAFT_428350 [Selaginella moellendorffii]
          Length = 2150

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 72/216 (33%), Gaps = 31/216 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVH----- 52
            + Y     + Y  L+       +  +  ++  ++ N          E    + +H     
Sbjct: 943  EYYRALLTKNYQLLRQGTKSQQSMINIIMQLRKVCNHPYLIPGTEPESGTGEFLHEMRIK 1002

Query: 53   -DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD 97
               K+  L  ++   K     +++       L  L+                    + + 
Sbjct: 1003 ASAKLTLLHSMLGSLKKEGHRVLIFSQMTKLLDILEDYLTFEFGHDSYERVDGSVPVAER 1062

Query: 98   PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ +N+     +      SCG G+NL    + ++ +   ++        +   + R 
Sbjct: 1063 QAAIRRYNKDTSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMNRA 1116

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  + + VY L+ + +++E +L   + K  ++ 
Sbjct: 1117 HRIGQSKKLLVYRLLVRGSVEERILHLAKKKLELEQ 1152


>gi|126277710|ref|XP_001370967.1| PREDICTED: similar to INO80 complex homolog 1 [Monodelphis domestica]
          Length = 1558

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1085 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1144

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1145 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1203

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR   KS IQ ++++ 
Sbjct: 1204 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRANEKSEIQQMVISG 1253


>gi|326479960|gb|EGE03970.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1688

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1401 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1460

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1461 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1514

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1515 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1553


>gi|313238906|emb|CBY13901.1| unnamed protein product [Oikopleura dioica]
          Length = 769

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           + Y   ++  +  D   +  ++ N    +  ++  ++ N       E         K + 
Sbjct: 226 QLYKHMKQGYMLMDTNDKKNKSGNKALMNTIMQLRKICNHPFITTCEGVPLVRAAGKFEL 285

Query: 59  LEVIIEKAN--AAPIIVAYHFNS-DLARLQKAFPQGRTLDK---------DPCTIQEWN- 105
           ++ I+ K       +++        L         G    +             ++++N 
Sbjct: 286 MQRILPKMKATGHKVLIFTQMTQAILLMEDYFNFYGYKYLRLDGSTKADDRGELLKKFNA 345

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G GLNLQ   + ++ F   W+  +           R  + G K  
Sbjct: 346 VNSDYDVFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQDRAHRIGQKNE 399

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V V   +   +++E +L   R K T+ + ++ A K
Sbjct: 400 VRVLRFVTSQSVEERILAAARYKLTVDEKVIQAGK 434


>gi|302811536|ref|XP_002987457.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
 gi|300144863|gb|EFJ11544.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
          Length = 1292

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--------- 54
           Y       Y  L   +    +  +  ++  ++       D  +   E  D          
Sbjct: 527 YRAVLTRNYEVLSRHSGVQVSLNNLVMELRKICAHPFLLDGVEEETEDEDAVQKTLVEAS 586

Query: 55  ---KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
               +        KA    +++   F   L  L+          +              I
Sbjct: 587 GKLLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYKNWNYERIDGKVSGADRQSRI 646

Query: 102 QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N     +        + G G+NL    + +V +   W+        +   + R  + 
Sbjct: 647 DRFNAPGSKIFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HADMQAMARAHRM 700

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G    V +Y LI + TI+E ++Q  + K  ++ L++  +K + ++
Sbjct: 701 GQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVVGRMKTQILN 745


>gi|219110099|ref|XP_002176801.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411336|gb|EEC51264.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 711

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 56/241 (23%)

Query: 13  CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
             L  + +           +      ++ N      +                       
Sbjct: 248 AFLLSDEVTKVVKGSKQLFAAVTMLRKICNHPDLACDPDEASFESFVRNGYVNQGDLDED 307

Query: 53  -----------------DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP---- 89
                              K++ L  I+   K     +++   +   L  +++       
Sbjct: 308 LSDLDSDIGEEKSLVERSGKLEVLSKILPLWKKQGHRVLIFCQWRKMLDIIERLIMLKEW 367

Query: 90  ------QGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +      + ++N  +    +     + G GLNL  G N ++ +   W+ +
Sbjct: 368 KFGRLDGNTNVASRQRLVDQFNSDESYFGMLCTTRTGGVGLNLT-GANRIILYDPDWNPQ 426

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 +     R  + G +R V VY LI   TI+E + QR   K+ + + +L   ++  
Sbjct: 427 T-----DAQARERAWRFGQEREVTVYRLITAGTIEEKIYQRQIFKTALSNKVLQDPRQRR 481

Query: 203 I 203
           +
Sbjct: 482 L 482


>gi|45190977|ref|NP_985231.1| AER375Cp [Ashbya gossypii ATCC 10895]
 gi|44984045|gb|AAS53055.1| AER375Cp [Ashbya gossypii ATCC 10895]
          Length = 1288

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVH---- 52
           + Y +  +     +      A         +K ++  ++ N    +DE +          
Sbjct: 711 QLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPTRTNS 770

Query: 53  ------DEKIKALEVIIEKAN--AAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                   K + L+ ++ K       +++ +           F                 
Sbjct: 771 SLLYRVSGKFELLDRVLPKFKATGHRVLMFFQMTQVMDIMEDFLQMKNLKYMRLDGATKA 830

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    +  +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 831 EERTGMLNAFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 884

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 885 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 931


>gi|326468559|gb|EGD92568.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1686

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1399 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1458

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1459 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1512

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1513 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1551


>gi|294897357|ref|XP_002775945.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239882312|gb|EER07761.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1009

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 25/204 (12%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY------DEEKHWKEVHDEKIKALEVII--EKANA 68
           G+      S        ++ N            +  +  E    K+  L  I+       
Sbjct: 552 GKTTLPPESLFYLGILRRICNHPDMLLYPGVQADGGYGSEQRSGKLSVLLKILDKWVPQG 611

Query: 69  APIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPC-TIQEWNEGK-IPLLFAHPA 117
             +++       L              +   G T  KD    + ++N  +   L+     
Sbjct: 612 HRVLIFSQTLGMLDILERKVDEKGWTCSRMDGSTPVKDRAHIVDDFNSPEGPQLMLLSTR 671

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G GLNL  G + +V F   W+        +     R  + G K  V +Y LIA  T++
Sbjct: 672 VGGVGLNLT-GADRIVIFDPDWNPMT-----DAQARERAWRIGQKNEVLIYRLIAMGTVE 725

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E + ++   K  +   +L+  ++ 
Sbjct: 726 ESMYKKQIFKHYLSQKILSDPRQR 749


>gi|225557819|gb|EEH06104.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Ajellomyces capsulatus G186AR]
          Length = 1423

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +        +                 ++  +L N    ++  +            
Sbjct: 782  KLYKQLATHNKLIVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 841

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 842  IWRTAGKFELLDRILPKFQASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 901

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 902  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 955

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 956  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1000


>gi|163751730|ref|ZP_02158948.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Shewanella benthica
            KT99]
 gi|161328382|gb|EDP99541.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger [Shewanella benthica
            KT99]
          Length = 1077

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 69/220 (31%), Gaps = 38/220 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------------------E 44
             + ++     + G        ++  +K  Q+                             
Sbjct: 839  EEMRK--AVSVSGVKRNRLAISNALLKLRQVCCHPDLLKLDYIEPSDLANADLADPNSAN 896

Query: 45   EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK--------AFPQGRTL 94
                 +    K+  L   +         +++   F S L+ + +                
Sbjct: 897  GVQPLDTRSGKLNWLAAKLPGMLEEGRRVLIFSSFTSMLSLIGELLEKLGISFVELTGKS 956

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  ++ + + ++P+      + G GLNL    ++++    WW+    Q         
Sbjct: 957  RDRGALVERFQQREVPIFLISLKAGGAGLNLTA-ADVVIHIDPWWNPAAEQ-----QASD 1010

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G  ++VFVY LI ++T++E +     +K  +   +
Sbjct: 1011 RAHRIGQDKSVFVYKLICKDTVEERIQLLQESKHNLAQSI 1050


>gi|123468950|ref|XP_001317690.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900430|gb|EAY05467.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1439

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 38/226 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKT----VKCLQLANGAVYYDEEKHWKE-------- 50
            Y     +   +L   +     +  +     ++  ++        + +            
Sbjct: 581 LYRSLIEQKIPELAASDSSHRRALPELPNLAMQLRKVCCHPYLIQDYEKIIGDVLQGMSE 640

Query: 51  -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNS----------DLARLQKAFPQGRT 93
                    K+  ++ ++ K +     I++   F                  +    G  
Sbjct: 641 FDQLVKCSGKMVFVDKLLGKLHPLGKKILIFSQFKHVLDIISQFLDMRNYKYERIDGGSH 700

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +     +  +N+    I +      + G GLNL    + ++ F   W+ +      +  
Sbjct: 701 GNDRQKKMDRFNDPTQDIFVFLLSTRAGGLGLNLTA-ADTVIIFDSDWNPQN-----DVQ 754

Query: 152 GVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G     V VY LI + T +  +  R   K  +   +L+
Sbjct: 755 AQARCHRIGQTAEKVVVYRLITRGTYESEMFDRASKKLGLDQAVLD 800


>gi|73999785|ref|XP_535436.2| PREDICTED: similar to yeast INO80-like protein isoform 1 [Canis
            familiaris]
          Length = 1519

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1046 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1105

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1106 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1164

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1165 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1214



 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 747 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 806

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L           +L       +E     +  +   PA   +
Sbjct: 807 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQESLFHRKGVNEESCFSFLRFIDVSPAEMAN 866

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 867 LMLQGLLARWLALF 880


>gi|302796603|ref|XP_002980063.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
 gi|300152290|gb|EFJ18933.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
          Length = 1274

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--------- 54
           Y       Y  L   +    +  +  ++  ++       D  +   E  D          
Sbjct: 527 YRAVLTRNYEVLSRHSGVQVSLNNLVMELRKICAHPFLLDGVEEETEDEDAVQKTLVEAS 586

Query: 55  ---KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
               +        KA    +++   F   L  L+          +              I
Sbjct: 587 GKLLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYKNWNYERIDGKVSGADRQSRI 646

Query: 102 QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N     +        + G G+NL    + +V +   W+        +   + R  + 
Sbjct: 647 DRFNAPGSKIFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HADMQAMARAHRM 700

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G    V +Y LI + TI+E ++Q  + K  ++ L++  +K + ++
Sbjct: 701 GQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVVGRMKTQILN 745


>gi|156841074|ref|XP_001643913.1| hypothetical protein Kpol_1067p28 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114542|gb|EDO16055.1| hypothetical protein Kpol_1067p28 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1053

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 29/211 (13%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYD------EEKHWKEVHDEKIKALEVII--EK 65
           +L                  ++ N     +       + +       K++ ++ ++   K
Sbjct: 583 ELGQIQNGKRQVLYGIDILRKICNHPDLLEKENRTLNKAYGDPKRSGKMQVVKQLLLLWK 642

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------------DPCTIQEWNEGKIP 110
                 ++       L  L+          K                   + ++N     
Sbjct: 643 KEGHKTLLFTQSRQMLDVLEDFISFKDEDLKGFKYLRMDGTTNISHRQSLVDKFNNENYD 702

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G + ++ F   W+              R  + G KR V +Y L
Sbjct: 703 VFLLTTRVGGLGVNLT-GADRIIIFDPDWNPSTDM-----QARERAWRIGQKREVSIYRL 756

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   TI+E +  R   K  + + +L   K++
Sbjct: 757 LITGTIEEKIYHRQLFKQFLTNKILTDPKQK 787


>gi|255935291|ref|XP_002558672.1| Pc13g02310 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583292|emb|CAP91300.1| Pc13g02310 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1908

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++   +L  +   A      +         +L N      +E H +       
Sbjct: 1582 KLFEDFTKKEQKELADKVGSADRGDKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQSF 1641

Query: 51   -----------VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL+ ++                      +    +V       
Sbjct: 1642 LSAKRSNIRDVSHAPKLNALKDLLVDCGIGLDHTAEGELDTGASYVSPHRALVFCQMKEM 1701

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                      G    K    +  +N +    +L    +  G GLNL 
Sbjct: 1702 LDIVQNDVLKKLLPSVQYLRLDGGVEATKRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT 1761

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1762 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1815

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1816 KIDVASTVVN 1825


>gi|149635666|ref|XP_001513276.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5
           [Ornithorhynchus anatinus]
          Length = 1012

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NSA K          ++  +  N    +      
Sbjct: 370 VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 429

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 430 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 489

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 490 DGQTPHDERQDSINAYNEPNSSKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ---- 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 545 -VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 596


>gi|56118945|ref|NP_001007993.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus (Silurana)
           tropicalis]
 gi|51704071|gb|AAH80870.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Xenopus (Silurana)
           tropicalis]
          Length = 1049

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 406 IKIYVGLSKMQREWYTKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPG 465

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++   K   + +++       L  L+             
Sbjct: 466 PPYTTDMHLVTNSGKMVVLDKLLPRLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 525

Query: 93  ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I  +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 526 DGQTPHEERQDSIIAYNAPGSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 580

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 581 -VDLQAMDRAHRIGQTKTVRVFRYITDNTVEERIVERAEMKLRLDSIVIQQGR 632


>gi|315048263|ref|XP_003173506.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
 gi|311341473|gb|EFR00676.1| hypothetical protein MGYG_03681 [Arthroderma gypseum CBS 118893]
          Length = 1358

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 784  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 843

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 844  IWRTAGKFELLDRILPKFLASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 903

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +NE             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 904  RSDLLKRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 957

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 958  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1002


>gi|260948588|ref|XP_002618591.1| hypothetical protein CLUG_02050 [Clavispora lusitaniae ATCC 42720]
 gi|238848463|gb|EEQ37927.1| hypothetical protein CLUG_02050 [Clavispora lusitaniae ATCC 42720]
          Length = 1186

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 45/234 (19%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
            Y KF    +    ++G                ++ N     D           +     
Sbjct: 687 MYEKFLGSEDAAAIMKG----RRRVLMGVDILRKICNHPDLVDRTALLHKKGYNYGSPAR 742

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDL----------------------ARLQKAF 88
             K++    ++   +A     ++       L                             
Sbjct: 743 SGKMQVARQLLQLWQAQGHRTLLFCQTRQMLDILERFVARMSCIDAQGAETSNPMRYLRM 802

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                + K    +  +N      +        G G+NL  G + ++ F   W+       
Sbjct: 803 DGSTPIGKRQQLVDTFNANEYYHVFLLTTKVGGLGVNLT-GADRVIIFDPDWNPST---- 857

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     R  + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 858 -DIQARERAWRLGQKRDITIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 910


>gi|309360381|emb|CAP31417.2| CBR-RAD-54 protein [Caenorhabditis briggsae AF16]
          Length = 1079

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 47/237 (19%)

Query: 3   QYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------------- 44
            Y+K    +++     + +   A ++ S      +L N      E               
Sbjct: 734 LYNKLIECEKQNRITEKDKGATA-SALSFITHLKKLCNHPYLVYEELQKPDNRFRTKCLS 792

Query: 45  -------EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF------ 88
                   K +      K+K L+ I+    K      ++  ++   + +           
Sbjct: 793 VFPEAFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMALCKLRGYD 852

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   ++ +    +  +N+    I        + G GLNL  G N LV F   W+  
Sbjct: 853 FVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDPDWNPA 911

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 +   + R  + G K+  F+Y L+A  +I+E + QR   K  +   +++A +
Sbjct: 912 N-----DDQAMARVWRDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGE 963


>gi|255692899|ref|ZP_05416574.1| Snf2 family helicase [Bacteroides finegoldii DSM 17565]
 gi|260621348|gb|EEX44219.1| Snf2 family helicase [Bacteroides finegoldii DSM 17565]
          Length = 1010

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QLA        +         +I  
Sbjct: 793 YEQEKNSLRNILLQHPQSTDKLHSFSVLNGILRLRQLACHPQLIFPDFTGSSGKTAQIIE 852

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T D+         +  +
Sbjct: 853 TFDTL-RSEGHKVLIFSSFVKHLEVLAEAFQERGWKYALLTGATNDRPSEIAHFTEQKDV 911

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 912 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 965

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I Q +I+E +LQ    K  + +  +
Sbjct: 966 FITQGSIEEKILQLQDEKRKLAETFV 991


>gi|323452052|gb|EGB07927.1| hypothetical protein AURANDRAFT_26802 [Aureococcus anophagefferens]
          Length = 1012

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSA---------SKTVKCLQLANGAVYY------ 42
           +K Y    + QR  Y  +  ++    N+          +  ++  ++ N    +      
Sbjct: 357 VKLYIGMTEMQRLWYTKILSKDAHTLNALGGPDRVQLLNILMQLRKVCNHPYLFEGAEPG 416

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAF 88
               +      +  K+  +  ++ K  A  + +++       L                 
Sbjct: 417 PPFMDGPHLWENTGKLVLMSKLLPKLMAQDSRVLIFSQMTRMLDILEDYMRLNQYKYCRI 476

Query: 89  PQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + D     +  +N              + G G+NL    +I+V +   W+ +    
Sbjct: 477 DGSTSGDDRDSQMDVFNAPGSEKFAFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ---- 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  + + T++E +++R   K  +   ++   +
Sbjct: 532 -VDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGR 583


>gi|317138645|ref|XP_001817051.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            oryzae RIB40]
          Length = 1422

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
            K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 797  KLYKQLVTHNKMAVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 856

Query: 53   ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 857  LWRTSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 916

Query: 97   DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    +         + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 917  RSDLLKLFNAENSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 970

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 971  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1015


>gi|315048299|ref|XP_003173524.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma gypseum CBS 118893]
 gi|311341491|gb|EFR00694.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma gypseum CBS 118893]
          Length = 1692

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1405 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1464

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1465 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1518

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1519 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1557


>gi|256027374|ref|ZP_05441208.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289765340|ref|ZP_06524718.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289716895|gb|EFD80907.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 1088

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 67/203 (33%), Gaps = 21/203 (10%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
            E        N       +   K  Q+        E+         KI A   +I+K   N
Sbjct: 878  ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED---ISSSSSKINACIELIKKSIEN 934

Query: 68   AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               I++   F + L                        K    ++++    +PL      
Sbjct: 935  KQRILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRNQLVEDFQNEAVPLFLISLK 994

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    ++++    WW++             R  + G +  V V+ LI +NTI+
Sbjct: 995  AGGTGLNLTK-ASVVIHLDPWWNISAQ-----NQATDRAHRIGQEDTVQVFNLITKNTIE 1048

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E +L     K  + D+ +   K 
Sbjct: 1049 EKILNLQNKKKELSDIFVENSKG 1071


>gi|83764905|dbj|BAE55049.1| unnamed protein product [Aspergillus oryzae]
          Length = 1417

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
            K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 792  KLYKQLVTHNKMAVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 851

Query: 53   ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 852  LWRTSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 911

Query: 97   DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    +         + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 912  RSDLLKLFNAENSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 965

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 966  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1010


>gi|327300573|ref|XP_003234979.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
 gi|326462331|gb|EGD87784.1| RSC complex subunit Sth1 [Trichophyton rubrum CBS 118892]
          Length = 1352

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 897

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +NE             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 898 RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|308803887|ref|XP_003079256.1| putative helicase (ISS) [Ostreococcus tauri]
 gi|116057711|emb|CAL53914.1| putative helicase (ISS) [Ostreococcus tauri]
          Length = 869

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 25/188 (13%)

Query: 32  CLQLANGAVYYDEEKHWK-----EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
             QL    +     +         +   K++ L  ++ +  A  +  ++   +   L  L
Sbjct: 665 LHQLCGDFMLQGALREKLLSPECGLESAKVQRLRELLVELKAKGSRALIFSQWKIMLDIL 724

Query: 85  QKAFPQ----------GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +                  +++    + ++N  +  +        + G GLNL  G + +
Sbjct: 725 EWVLCHVGFSYARLDGDTAVEERQELVDKFNAKDSSLDTFLLSTRAGGQGLNLT-GADTV 783

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +     ++ +     I+R    R  + G ++ V VY  + + T+DE ++     K  +  
Sbjct: 784 ILHDCDFNPQ-----IDRQAEDRCHRLGQEKQVTVYRFVTEGTVDEKIVAIAEHKMNLGS 838

Query: 193 LLLNALKK 200
            +L   ++
Sbjct: 839 TILAEGEQ 846


>gi|281203153|gb|EFA77354.1| chromo domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1842

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 29/222 (13%)

Query: 2    KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKH--------WKEVH 52
            K Y     + + +L      E     +   +  +  N    ++  +              
Sbjct: 958  KYYRWILSKNFHELNKGVKGEKTTLLNIVAELKKTCNHPYLFENAEDLNAENPLDAMVKA 1017

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
              K+  L+ ++   K     +++       L  L                  + +K    
Sbjct: 1018 SGKLILLDKLLVRLKETGHRVLIFSQMVRMLDILADYLKGRGFLFQRLDGSTSREKRSQA 1077

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N    P         + G G+NL    + ++ F   W+ +      +     R  +
Sbjct: 1078 MDRFNAEGSPDFAFLLSTRAGGLGINL-STADTVIIFDSDWNPQN-----DLQAEARAHR 1131

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             G K  V +Y L++++TI+E +L+R + K  +  L++ +++K
Sbjct: 1132 IGQKNTVNIYRLVSKSTIEEEILERAKQKMVLDHLVIQSMEK 1173


>gi|326444982|ref|ZP_08219716.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1408

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 28/217 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-------DEEKHWKEVHD 53
             Y     E   +++     A          +  ++ N    +         +        
Sbjct: 1175 LYQTVADETLREIRAAEGIARKGLLLKLFDQLQKICNAPEQFLAEPLDSTYDAERAAARS 1234

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             K+ AL+ ++          ++   + +   RL                           
Sbjct: 1235 GKLAALDDLLPTLSDPDESCLIFTRYRAMARRLVHHLQGHGISPLYFSGDISAGRDRQRV 1294

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            I  +       +     + G GL L    + ++ F   W+  +  Q I+R       + G
Sbjct: 1295 IDTFQNHPGQTMVITIKAGGTGLTLTQ-ASHVILFDRPWNPAKESQAIDR-----AHRLG 1348

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V V+ L  +NT+++ V + LR KS + D +L +
Sbjct: 1349 QTRTVTVHQLTTENTLEDRVEELLRHKSALADAVLAS 1385


>gi|254389181|ref|ZP_05004410.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702897|gb|EDY48709.1| SNF2/RAD54 family helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 964

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 28/217 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYY-------DEEKHWKEVHD 53
            Y     E   +++     A          +  ++ N    +         +        
Sbjct: 731 LYQTVADETLREIRAAEGIARKGLLLKLFDQLQKICNAPEQFLAEPLDSTYDAERAAARS 790

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
            K+ AL+ ++          ++   + +   RL                           
Sbjct: 791 GKLAALDDLLPTLSDPDESCLIFTRYRAMARRLVHHLQGHGISPLYFSGDISAGRDRQRV 850

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  +       +     + G GL L    + ++ F   W+  +  Q I+R       + G
Sbjct: 851 IDTFQNHPGQTMVITIKAGGTGLTLTQ-ASHVILFDRPWNPAKESQAIDR-----AHRLG 904

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R V V+ L  +NT+++ V + LR KS + D +L +
Sbjct: 905 QTRTVTVHQLTTENTLEDRVEELLRHKSALADAVLAS 941


>gi|83286456|ref|XP_730169.1| chromodomain-helicase-DNA-binding protein, CHD-1-related [Plasmodium
            yoelii yoelii str. 17XNL]
 gi|23489816|gb|EAA21734.1| chromodomain-helicase-DNA-binding protein, CHD-1-related [Plasmodium
            yoelii yoelii]
          Length = 2541

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEV------HD 53
            ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 1175 IEYYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCCEPIDKDEYRERLVYSS 1234

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             KI  LE ++   K     +++       L              +      T +     +
Sbjct: 1235 GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMTKEMRKKAM 1294

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1295 NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 1348

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 1349 GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 1390


>gi|325095549|gb|EGC48859.1| SNF2-family ATP dependent chromatin remodeling factor [Ajellomyces
            capsulatus H88]
          Length = 1423

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    ++  +            
Sbjct: 782  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 841

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 842  IWRTAGKFELLDRILPKFQASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 901

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 902  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 955

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 956  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1000


>gi|260943410|ref|XP_002616003.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
 gi|238849652|gb|EEQ39116.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
          Length = 879

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 45/239 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------------- 50
                          + A           +L             +               
Sbjct: 564 RALYEHFISSDDSSKLIASQPLKAIDMLKKLCTHPDLLSLPDDIQGSRKLIPDDYQSSEA 623

Query: 51  ---------VHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                        K   LE  + +        I+V  ++   L  ++K            
Sbjct: 624 GGRGREIQTWFSAKFSILERFLHQIRTQTNDKIVVISNYTRTLDLIEKMCRYKRYGSLRL 683

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               T++K    +  +N+ +    +      + G G+NL  G N LV     W+    Q 
Sbjct: 684 DGTMTINKRQKIVDRFNDPEGNEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPAADQ- 741

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 + R  + G K+  F+Y  +   TI+E + QR   K ++   +++A K++   +
Sbjct: 742 ----QALARVWRDGQKKDCFIYRFMCTGTIEEKIFQRQSMKLSLSSCVVDA-KEDVERI 795


>gi|224125208|ref|XP_002329920.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222871157|gb|EEF08288.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2332

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          +    + +H+ +
Sbjct: 998  EYYRAMLTKNYQMLRNIGKGVAQQSMLNIVMQLRKICNHPYLIPGTEPDSGSLEFLHEMR 1057

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + I       +++       L  L+                   ++ 
Sbjct: 1058 IKASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILEDYLTIEFGPKTYERVDGSVSVS 1117

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 1118 DRQTAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1171

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1172 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1213


>gi|148696004|gb|EDL27951.1| INO80 complex homolog 1 (S. cerevisiae) [Mus musculus]
          Length = 1032

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 559 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 618

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 619 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 677

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 678 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 727


>gi|237744605|ref|ZP_04575086.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229431834|gb|EEO42046.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 1088

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 67/203 (33%), Gaps = 21/203 (10%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
            E        N       +   K  Q+        E+         KI A   +I+K   N
Sbjct: 878  ETLAQSIDVNTNKIEVLAMLTKLRQICIDPRLLYED---ISSSSSKINACIELIKKSIEN 934

Query: 68   AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               I++   F + L                        K    ++++    +PL      
Sbjct: 935  KQRILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRNQLVEDFQNEAVPLFLISLK 994

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G GLNL    ++++    WW++             R  + G +  V V+ LI +NTI+
Sbjct: 995  AGGTGLNLTK-ASVVIHLDPWWNISAQ-----NQATDRAHRIGQEDTVQVFNLITKNTIE 1048

Query: 178  ELVLQRLRTKSTIQDLLLNALKK 200
            E +L     K  + D+ +   K 
Sbjct: 1049 EKILNLQNKKKELSDIFVENSKG 1071


>gi|190347304|gb|EDK39551.2| hypothetical protein PGUG_03649 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1117

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 41/230 (17%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
            Y KF    +L+  L+G+     N  +      ++ N     D           +     
Sbjct: 610 MYEKFLSSEDLHAILKGK----RNMLTGVDTLRKICNHPDLVDRELLLRKKGYNYGIPNK 665

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARL------------------QKAFPQGR 92
             K+  L+ ++   ++     ++       L  L                          
Sbjct: 666 SGKMLVLKGLLQLWQSQGHRTLLFCQTKQMLDILEKLLVNLTRISDGTEYFNYMRMDGST 725

Query: 93  TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + K    +  +N      +        G G+NL  G + ++ +   W+        +  
Sbjct: 726 PISKRQGLVDMFNNNTNYDVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQ 779

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 780 ARERAWRLGQKRDIVIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 829


>gi|302817780|ref|XP_002990565.1| hypothetical protein SELMODRAFT_185367 [Selaginella moellendorffii]
 gi|300141733|gb|EFJ08442.1| hypothetical protein SELMODRAFT_185367 [Selaginella moellendorffii]
          Length = 1296

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 28/225 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK------ 55
           + Y +     Y  L        +  +  ++  +L        E     E  + +      
Sbjct: 534 ELYKEILTRNYEALSKRGGPQVSLNNVVMELRKLCGHPYMVIEPDSKNEEEENRHRIESS 593

Query: 56  ----IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTI 101
               +    ++  KA+   +++   F   L              +      T  +    I
Sbjct: 594 GKLSLLDKMMVKLKASGHRVLLYSQFQHMLDILEDYLTHKNWSYERIDGNVTGAERQIRI 653

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N              + G G+NL    + +V +   W+        +   + R  + 
Sbjct: 654 DRFNAPNSNRFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HADLQAMARAHRL 707

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G K  V +Y L+ + +I+E ++Q  + K  ++ L++  +K + ++
Sbjct: 708 GQKNMVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRMKTQVLN 752


>gi|302510453|ref|XP_003017178.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
 gi|291180749|gb|EFE36533.1| hypothetical protein ARB_04055 [Arthroderma benhamiae CBS 112371]
          Length = 1405

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 831  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 890

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 891  IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 950

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +NE             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 951  RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 1004

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 1005 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1049


>gi|85083489|ref|XP_957128.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Neurospora crassa OR74A]
 gi|28918214|gb|EAA27892.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Neurospora crassa OR74A]
          Length = 1455

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
           + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++     +     
Sbjct: 766 RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 825

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++ K       +++ +   + +  ++                     
Sbjct: 826 LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKAED 885

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 886 RSELLRLFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 939

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 940 RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 984


>gi|302803789|ref|XP_002983647.1| hypothetical protein SELMODRAFT_155996 [Selaginella moellendorffii]
 gi|300148484|gb|EFJ15143.1| hypothetical protein SELMODRAFT_155996 [Selaginella moellendorffii]
          Length = 1296

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 28/225 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK------ 55
           + Y +     Y  L        +  +  ++  +L        E     E  + +      
Sbjct: 534 ELYKEILTRNYEALSKRGGPQVSLNNVVMELRKLCGHPYMVIEPDSKNEEEENRHRIESS 593

Query: 56  ----IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTI 101
               +    ++  KA+   +++   F   L              +      T  +    I
Sbjct: 594 GKLSLLDKMMVKLKASGHRVLLYSQFQHMLDILEDYLTHKNWSYERIDGNVTGAERQIRI 653

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N              + G G+NL    + +V +   W+        +   + R  + 
Sbjct: 654 DRFNAPNSNRFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HADLQAMARAHRL 707

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G K  V +Y L+ + +I+E ++Q  + K  ++ L++  +K + ++
Sbjct: 708 GQKNMVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRMKTQVLN 752


>gi|145253731|ref|XP_001398378.1| DNA helicase ino80 [Aspergillus niger CBS 513.88]
 gi|206558118|sp|A2R9H9|INO80_ASPNC RecName: Full=Putative DNA helicase ino80
 gi|134083950|emb|CAK43045.1| unnamed protein product [Aspergillus niger]
          Length = 1697

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1404 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1463

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1464 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1517

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1518 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVI 1554


>gi|291233864|ref|XP_002736872.1| PREDICTED: excision repair cross-complementing rodent repair
            deficiency, complementation group 6-like [Saccoglossus
            kowalevskii]
          Length = 1503

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 37/209 (17%)

Query: 24   NSASKTVKCLQLANGAVYY------------------DEEKHWKEVHDEKIKALEVII-- 63
               +  +   ++ N                       +E ++       K+  +E ++  
Sbjct: 818  KVFAGLITLRKICNHPDISTGGPRVLKGDYEHDDDIPEEMRYGYWKKSGKLIVIESLLKL 877

Query: 64   EKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
             K     +++       L  L                   +      +  +N +  + + 
Sbjct: 878  WKKQGHRVLLFTQSKQMLDILDSFVTSRGYNYMRMDGSTPISSRQPAVNRFNQDKSVFVF 937

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G G+NL  G + +V +   W+              R  + G  + V +Y L+ 
Sbjct: 938  LLTTRVGGLGVNL-IGADRVVIYDPDWNPSTDM-----QARERAWRIGQNKQVTIYRLLT 991

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              TI+E +  R   K  + + +L   K+ 
Sbjct: 992  SGTIEEKIYHRQIFKQFLTNRVLKDPKQR 1020


>gi|261334500|emb|CBH17494.1| DNA repair and recombination protein RAD54,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 1037

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 49/232 (21%)

Query: 8   QRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDE---------EKHWKEVHDEKIK 57
           QRE Y  +                   +L N    + E         +     +    + 
Sbjct: 626 QREAYEKISAIVESSQCTPLVLISSLRKLCNHMDLFHEAVVSSNGDQKGKGGGIPKSVLP 685

Query: 58  ---------------------ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                                 L+ +    +   +++  +F   L  +            
Sbjct: 686 KGYKVGTLSQEVGSKMQFVSLMLDELCSNGDHDKLVIVSNFTQTLDVIAAMCKTKKISFF 745

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  + +    +  +N       +      + G GLNL  G N L+ F   W+    
Sbjct: 746 QLDGSMPIKRRQEVVDRFNVPNSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN- 803

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +   + R  + G K+ VF+Y L++  +I+E + QR  +K  +   +++
Sbjct: 804 ----DAQAMGRVWRDGQKKRVFIYRLLSTGSIEEKIYQRQVSKQGLSANVVD 851


>gi|71755407|ref|XP_828618.1| DNA repair/recombination protein RAD54 [Trypanosoma brucei TREU927]
 gi|70834004|gb|EAN79506.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           brucei]
          Length = 1037

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 49/232 (21%)

Query: 8   QRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDE---------EKHWKEVHDEKIK 57
           QRE Y  +                   +L N    + E         +     +    + 
Sbjct: 626 QREAYEKISAIVESSQCTPLVLISSLRKLCNHMDLFHEAVVSSNGDQKGKGGGIPKSVLP 685

Query: 58  ---------------------ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                                 L+ +    +   +++  +F   L  +            
Sbjct: 686 KGYKVGTLSQEVGSKMQFVSLMLDELCSNGDHDKLVIVSNFTQTLDVIAAMCKTKKISFF 745

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  + +    +  +N       +      + G GLNL  G N L+ F   W+    
Sbjct: 746 QLDGSMPIKRRQEVVDRFNVPNSQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN- 803

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +   + R  + G K+ VF+Y L++  +I+E + QR  +K  +   +++
Sbjct: 804 ----DAQAMGRVWRDGQKKRVFIYRLLSTGSIEEKIYQRQVSKQGLSANVVD 851


>gi|159126257|gb|EDP51373.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus fumigatus
            A1163]
          Length = 1708

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1416 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1475

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1476 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1529

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1530 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|70998570|ref|XP_754007.1| SNF2 family helicase/ATPase (Ino80) [Aspergillus fumigatus Af293]
 gi|74672951|sp|Q4WTV7|INO80_ASPFU RecName: Full=Putative DNA helicase ino80
 gi|66851643|gb|EAL91969.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus fumigatus
            Af293]
          Length = 1708

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1416 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1475

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1476 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1529

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1530 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|119499890|ref|XP_001266702.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL
           181]
 gi|119414867|gb|EAW24805.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL
           181]
          Length = 1141

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 457 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 516

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 517 VYNSGKMVILDKLLARMQQQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTTAHEDR 576

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 577 IAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 630

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 631 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 676


>gi|324502629|gb|ADY41155.1| DNA excision repair protein ERCC-6 [Ascaris suum]
          Length = 1156

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 34/207 (16%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-----------------IEK 65
            ++    +   +L N         +    ++  +                       + K
Sbjct: 552 MDAFVGLITLRKLCNHPDLVTGGPNKHNEYNVTLDEEMDFGAASRSGKMIVLKALLKLWK 611

Query: 66  ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
                +++       L  L+K                 +      ++++N    I L   
Sbjct: 612 DQNQKVLLFSQSRQMLTLLEKFVIKEGYEYLRMDGSTPIGSRQPLVEKFNTNEDIFLFLL 671

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G G+NL  G N +V F   W+        +     R  + G +RAV VY L+   
Sbjct: 672 TTKVGGLGVNLT-GANRVVIFDPDWNPST-----DVQARERAWRIGQERAVTVYRLLTSG 725

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           TI+E + QR   K  + + +L   K+ 
Sbjct: 726 TIEEKIYQRQIFKQFLANRVLVDPKQR 752


>gi|198433296|ref|XP_002124821.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            [Ciona intestinalis]
          Length = 4218

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 39/237 (16%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYD--EEKHWKEV------ 51
            K Y       +  L          N  +  ++  +  N        E+K  +E       
Sbjct: 1831 KYYRAILERNFEFLAKGTTGGNVPNLMNTMMELRKCCNHPYLIKGAEDKIMQEHRVMSNE 1890

Query: 52   ---------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQKAFPQ 90
                        K+  ++ ++   K     +++       L              +    
Sbjct: 1891 QNPLQAMIQSSGKLVLIDKLLPRLKQGGHKVLIFSQMVRVLDILEDYLVQRSYFYERIDG 1950

Query: 91   GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                ++    I  ++       +      + G G+NL    + ++ F   W+ +      
Sbjct: 1951 CIRGNERQMAIDRFSRKGSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN----- 2004

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +     R  + G ++ V +Y LI +N+ +  +  +   K  +   +L ++      +
Sbjct: 2005 DLQAQARCHRIGQQKPVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSISGRQDQI 2061


>gi|302658563|ref|XP_003020983.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
 gi|291184858|gb|EFE40365.1| hypothetical protein TRV_04848 [Trichophyton verrucosum HKI 0517]
          Length = 1362

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 788  KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 847

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 848  IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFMRFRGMKYLRLDGATKSDD 907

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +NE             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 908  RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 961

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 962  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1006


>gi|84998236|ref|XP_953839.1| SWI/SNF family trascriptional activator protein [Theileria
           annulata]
 gi|65304836|emb|CAI73161.1| SWI/SNF family trascriptional activator protein, putative
           [Theileria annulata]
          Length = 1012

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 84/233 (36%), Gaps = 35/233 (15%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNS--ASKTVKCLQLANGAVYY--------DEEKHWK 49
           + Y    R+   +L          +    +  ++  +  N    +        D      
Sbjct: 429 QLYRDLLRKNVPELGVDDNTKSGIHVQLLNLAMQLRKACNHPYLFEGYEDRNEDPFGEHV 488

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  ++ +I +   N++ I++       L  L+                 + +  
Sbjct: 489 VQNSGKLSLVDKLIPRLLGNSSRILIFSQMARMLDILEDYCRMRNYLYFRIDGNTSSEDR 548

Query: 98  PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N  +  + +      + G G+NL    ++++ +   W+ +     ++   + R
Sbjct: 549 DYQISSFNQPDSMVNIFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAIDR 602

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK---KETIHV 205
             + G  + V+VY L+ Q TI+E +++R   K  +   ++   +   KE + +
Sbjct: 603 AHRIGQLKPVYVYRLVHQYTIEEKIIERATMKLQLDTAVIQHGRLAQKELLQM 655


>gi|117606190|ref|NP_001071054.1| chromodomain-helicase-DNA-binding protein 7 [Gallus gallus]
 gi|123883232|sp|Q06A37|CHD7_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|115394059|gb|ABI96999.1| chromodomain helicase DNA-binding protein 7 [Gallus gallus]
          Length = 3011

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1217 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1276

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1277 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1336

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1337 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1393

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1394 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1446


>gi|115438288|ref|XP_001218028.1| hypothetical protein ATEG_09406 [Aspergillus terreus NIH2624]
 gi|121733988|sp|Q0CA78|INO80_ASPTN RecName: Full=Putative DNA helicase ino80
 gi|114188843|gb|EAU30543.1| hypothetical protein ATEG_09406 [Aspergillus terreus NIH2624]
          Length = 1690

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1397 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1456

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1457 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1510

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1511 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVI 1547


>gi|297484148|ref|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus]
 gi|296479122|gb|DAA21237.1| chromodomain helicase DNA binding protein 5 [Bos taurus]
          Length = 2099

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 1046 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1105

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1106 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1165

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1166 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1219

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1220 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1261


>gi|168206269|ref|ZP_02632274.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|170662244|gb|EDT14927.1| putative helicase [Clostridium perfringens E str. JGS1987]
          Length = 1067

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +   +     K+  ++ I++    +   I++
Sbjct: 861  EKSGRDKINLFAYLTKLREICLDPSLVVPDYTGE---SSKLTVVKEIVKDASESGKKILL 917

Query: 74   AYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G         ++ +N +  I +      + G G
Sbjct: 918  FSQFTSVLKKIEEDFKKEDISYLYLDGGTYAKDRVEIVKNFNEDSNIKVFLISLKAGGVG 977

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 978  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1031

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1032 MQEDKRELIQSLMDG 1046


>gi|159110197|ref|XP_001705360.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            ATCC 50803]
 gi|157433443|gb|EDO77686.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            ATCC 50803]
          Length = 2645

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 78/219 (35%), Gaps = 27/219 (12%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------KEVHDEKIKALE 60
               + Y  L  ++  +    +  ++  ++ N      + K              K + L+
Sbjct: 1536 LLEQNYEMLTAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTANLKDIVDGSGKFQVLD 1595

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             +++K N     +++       L  L++                T ++    I  +NE  
Sbjct: 1596 KLLDKLNSEGHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKN 1655

Query: 109  IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      S G G+NL    + ++ F   ++        +     R  + G  + V 
Sbjct: 1656 SKDFIFLLSTRSGGQGINL-ATADTVIIFDADYNP-----HNDLQAAGRVHRIGQSKPVT 1709

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +Y L+ +++++E +L     K  +   ++   K E+I++
Sbjct: 1710 IYRLVTRDSVEERILDIGHRKLMLDYAIIQK-KNESINL 1747


>gi|322382458|ref|ZP_08056353.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153571|gb|EFX45960.1| ATP-binding SNF2 helicase-like protein/protein kinase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 10/182 (5%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            + K LQ+A+GAVY +E    KE+H+ K+ ALE I+E +   P++V Y++   L R+Q+ 
Sbjct: 280 LSNKLLQMASGAVYDEERGV-KEIHEAKLDALEDILEASQGKPVMVFYNYKHSLQRVQQR 338

Query: 88  FPQGRTLDKDP---CTIQEWNEGKIPLLFAHPASCGHGLNLQ-YGGNILVFFSLWWDLEE 143
           FPQ R L K       I +WN  KIPLL  HP S GHGLNLQ      +++F   W LEE
Sbjct: 339 FPQARILRKGKEGVQDITDWNTNKIPLLLLHPKSAGHGLNLQESNCQTVIWFDQIWSLEE 398

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            Q         R  + G  R + V  L+A+ T+DE V++ +  K+T Q+ L+ A+K    
Sbjct: 399 FQ-----QANARVYRQGQTRKIVVMQLVAEGTMDEEVVEAIDKKATGQEELMQAVKARIE 453

Query: 204 HV 205
            +
Sbjct: 454 RI 455


>gi|328783971|ref|XP_001120586.2| PREDICTED: DNA excision repair protein ERCC-6-like [Apis mellifera]
          Length = 1134

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 67/239 (28%), Gaps = 43/239 (17%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKE---- 50
           K Y K+ R      +  E     N               ++ N    Y            
Sbjct: 587 KLYKKYLRSTDVSFILHEKNNIENGKYRARLLIALSALRKICNHPDLYLYTTPIDSDEDI 646

Query: 51  -------------VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQ 85
                         H  K+  +  ++   K     +++       +              
Sbjct: 647 DISDETLEKFGYWKHSGKMIVVRSLLKIWKKQGHRVLLFTQGRQMMHILESLIQNEQYTY 706

Query: 86  KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +     TI+ +N +    +        G G+NL  G N +V +   W+    
Sbjct: 707 LRMDGTTPMSHRQETIRSFNKDSSYFIFLLTTRVGGLGVNLT-GANRVVIYDPDWNPAT- 764

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +     R  + G  + V +Y LI   TI+E +  R   K  + + +L   ++  +
Sbjct: 765 ----DAQARERAWRIGQNKNVTIYRLITAGTIEEKIYHRQIFKILLSNKVLEDPRQRRL 819


>gi|327356382|gb|EGE85239.1| RSC complex subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 1487

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    ++  +            
Sbjct: 844  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 903

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 904  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 963

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 964  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 1017

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 1018 RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1062


>gi|301754870|ref|XP_002913258.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Ailuropoda melanoleuca]
 gi|281338216|gb|EFB13800.1| hypothetical protein PANDA_001057 [Ailuropoda melanoleuca]
          Length = 1561

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1088 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1147

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1148 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1206

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1207 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256



 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 789 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 848

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L          ++L       +E     +  +   PA   +
Sbjct: 849 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSLFHRKGVNEESCFSFLRFIDVSPAEMAN 908

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 909 LMLQGLLARWLALF 922


>gi|156086702|ref|XP_001610760.1| SNF2 helicase [Babesia bovis T2Bo]
 gi|154798013|gb|EDO07192.1| SNF2 helicase, putative [Babesia bovis]
          Length = 894

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 83/233 (35%), Gaps = 35/233 (15%)

Query: 2   KQYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           + Y    R    DL  E+    +      +  ++  +  N    +        D      
Sbjct: 337 RLYKDLLRRTVPDLGAEDSHSSVVKVQLLNLAMQLRKACNHPYLFEGWEDRDADPFGEHL 396

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  ++ ++ +     + I++       L  L+                 + ++ 
Sbjct: 397 VENAGKLNVVDKLLRRLLKANSRILIFSQMARMLDILEDYCRMRGYSYFRIDGNTSGEER 456

Query: 98  PCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N+    +        + G G+NL    ++++ +   W+ +     ++   + R
Sbjct: 457 DDQISSFNDPNSEVSIFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAIDR 510

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK---KETIHV 205
             + G  + V VY L+ + TI+E +++R   K  +   ++ + +   KE + +
Sbjct: 511 AHRIGQSKTVHVYRLVHEYTIEEKIIERATIKLQLDSAVIQSGRMGQKELLEM 563


>gi|19704495|ref|NP_604057.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
 gi|19714769|gb|AAL95356.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
          Length = 1089

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 24/214 (11%)

Query: 2    KQYHK--FQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            K Y     +  E        N       +   K  Q+        E+         KI A
Sbjct: 868  KLYQANLIKINETLAQNIDVNTNKIEVLAMLTKLRQICIDPRLLYED---VSSSSSKINA 924

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNE 106
               +IEK   N   I++   F + L                        K    ++ +  
Sbjct: 925  CIELIEKSIENNQKILLFSSFTTVLDLVAQECDNLSIPYFMLTGETNKVKRKEMVENFQN 984

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              +PL      + G GLNL    ++++    WW++             R  + G +  V 
Sbjct: 985  EAVPLFLISLKAGGTGLNLTK-ASVVIHLDPWWNISAQ-----NQATDRAHRIGQEDTVQ 1038

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V+ LI +NTI+E +L     K  + D+ +   K 
Sbjct: 1039 VFNLITKNTIEEKILNLQSKKKELSDIFVENSKG 1072


>gi|170940256|emb|CAP65483.1| unnamed protein product [Podospora anserina S mat+]
          Length = 866

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 22/207 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVI 62
            +F+R    +L    I      +  ++   + N     Y  E          K+  L+ +
Sbjct: 578 DEFERARTLELAKREISLKKLGNPVMQLRLVCNSPHHFYDCEADESIVTASGKMLLLDRL 637

Query: 63  IEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN-EGK 108
           +         +++   FN  L                        +     I+++N + +
Sbjct: 638 LPALFERGHKVLIFSQFNKQLDLLESYCADLRGWPVCRIDGSVAQEDRQAQIEDFNKDPE 697

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +      + G G+NL    + ++ F   W+ ++     +     R  + G  R V VY
Sbjct: 698 LKIFLLTTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTRPVVVY 751

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L  ++T+++ +L     K  ++ L++
Sbjct: 752 RLATKDTVEDELLGSADAKRRLEKLVI 778


>gi|326917666|ref|XP_003205117.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 7-like [Meleagris gallopavo]
          Length = 3011

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1217 KYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1276

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1277 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1336

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1337 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1393

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1394 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1446


>gi|73999781|ref|XP_849183.1| PREDICTED: similar to yeast INO80-like protein isoform 3 [Canis
            familiaris]
          Length = 1560

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1087 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1146

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1147 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1205

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1206 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255



 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 788 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 847

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L           +L       +E     +  +   PA   +
Sbjct: 848 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQESLFHRKGVNEESCFSFLRFIDVSPAEMAN 907

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 908 LMLQGLLARWLALF 921


>gi|237795092|ref|YP_002862644.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
 gi|229260925|gb|ACQ51958.1| helicase, SNF2/RAD54 family [Clostridium botulinum Ba4 str. 657]
          Length = 1077

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++ +          S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIREKGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I++        I++   F S L                       D     +++
Sbjct: 908  TETLLDIVDSSINAGHKILLFSQFTSVLKNIAEVFKINNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|268566403|ref|XP_002639713.1| C. briggsae CBR-RAD-54 protein [Caenorhabditis briggsae]
          Length = 782

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 47/237 (19%)

Query: 3   QYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------------- 44
            Y+K    +++     + +   A ++ S      +L N      E               
Sbjct: 437 LYNKLIECEKQNRITEKDKGATA-SALSFITHLKKLCNHPYLVYEELQKPDNRFRTKCLS 495

Query: 45  -------EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF------ 88
                   K +      K+K L+ I+    K      ++  ++   + +           
Sbjct: 496 VFPEAFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMALCKLRGYD 555

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   ++ +    +  +N+    I        + G GLNL  G N LV F   W+  
Sbjct: 556 FVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDPDWNPA 614

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 +   + R  + G K+  F+Y L+A  +I+E + QR   K  +   +++A +
Sbjct: 615 N-----DDQAMARVWRDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGE 666


>gi|307191137|gb|EFN74835.1| DNA excision repair protein ERCC-6 [Camponotus floridanus]
          Length = 983

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVHD- 53
           K Y K    E    +  E                     ++ N    +   + +    D 
Sbjct: 459 KLYKKYLCSEDVTFILHEKNNHDTGRYRARFLIALSALRKICNHPDLFLYTREFDSDEDI 518

Query: 54  ----------------EKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQ 85
                            K+  +  ++         +++       +              
Sbjct: 519 TLSEEQLEKFGYWKRAGKMNVVRSLLKIWHKQQHRVLLFTQGRQMMHILESLLQREGYTY 578

Query: 86  KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   + +   TI  +N      +        G G+NL  G + ++ +   W+    
Sbjct: 579 LRMDGTTAMSQRQQTIHTFNNRPSYFVFLLTTRVGGLGVNL-IGADRVIIYDPDWNPAT- 636

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               +     R  + G  + V VY LI   TI+E +  R   K  + + +L+  ++  +
Sbjct: 637 ----DAQARERAWRIGQNKQVTVYRLITAGTIEEKMYHRQIFKLLLSNKVLDDPRQRRL 691


>gi|168184681|ref|ZP_02619345.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
 gi|182672230|gb|EDT84191.1| helicase, SNF2/RAD54 family [Clostridium botulinum Bf]
          Length = 1077

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++ +          S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIREKGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I++        I++   F S L                       D     +++
Sbjct: 908  TETLLDIVDSSINAGHKILLFSQFTSVLKNIAEVFKINNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|325179864|emb|CCA14266.1| hypothetical protein SORBIDRAFT_03g009030 [Albugo laibachii Nc14]
          Length = 938

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 28/192 (14%)

Query: 32  CLQLANGAVYYDEEKHW--------KEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL 81
              L N                         K+  L  I+   K     +++       L
Sbjct: 456 LRHLCNHPDLVKRAGDEASRSENFGSIEKSGKMLVLCKILAMWKDQGHRVLLFTQTRMML 515

Query: 82  ARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGG 129
             L++                 + +    + ++N+ +  I +      + G G+NL  G 
Sbjct: 516 DILERLMEHLGYNHCRLDGSTPVKERQRLLDKFNDAESGIFIFLLTTRAGGIGINL-AGA 574

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           N +V F   W+              R  + G  + V +Y LI   TI+E +  R   K  
Sbjct: 575 NRVVIFDPDWNPSTDM-----QARERSWRIGQIKQVTIYRLITSGTIEEKIYHRQIFKQY 629

Query: 190 IQDLLLNALKKE 201
           +   +L+  K++
Sbjct: 630 LTTKVLHDPKRK 641


>gi|295674669|ref|XP_002797880.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb01]
 gi|226280530|gb|EEH36096.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb01]
          Length = 1332

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +        +             S   ++  +L N    ++  +            
Sbjct: 691 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 750

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                 K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 751 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 810

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 811 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 864

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 865 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 909


>gi|73999783|ref|XP_858164.1| PREDICTED: similar to yeast INO80-like protein isoform 4 [Canis
            familiaris]
          Length = 1584

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1111 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1170

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1171 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1229

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1230 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1279



 Score = 35.1 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 788 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 847

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L           +L       +E     +  +   PA   +
Sbjct: 848 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQESLFHRKGVNEESCFSFLRFIDVSPAEMAN 907

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 908 LMLQGLLARWLALF 921


>gi|311244967|ref|XP_003121636.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Sus
            scrofa]
          Length = 1566

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1093 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1152

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1153 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1211

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1212 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1261



 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 794 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 853

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L          ++L       +E     +  +   PA   +
Sbjct: 854 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSLFHRKGVNEESCFSFLRFIDVSPAEMAN 913

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 914 LMLQGLLARWLALF 927


>gi|134083941|emb|CAK43037.1| unnamed protein product [Aspergillus niger]
          Length = 1418

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 798  KLYRQLVTHNKMAVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 857

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 858  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDD 917

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 918  RSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 971

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 972  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1016


>gi|25144179|ref|NP_498468.2| yeast ISW (imitation SWI) homolog family member (isw-1)
           [Caenorhabditis elegans]
 gi|21264515|sp|P41877|ISW1_CAEEL RecName: Full=Chromatin-remodeling complex ATPase chain isw-1;
           AltName: Full=Nucleosome-remodeling factor subunit isw-1
 gi|16950408|gb|AAA50636.2| Yeast isw (imitation swi) homolog protein 1 [Caenorhabditis
           elegans]
          Length = 1009

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 88/233 (37%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYYDEEK-- 46
           +K Y    K QRE Y  +  ++I+  N A K          +   +  N    +D  +  
Sbjct: 362 VKVYVGLSKMQREWYTKVLMKDIDIINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 421

Query: 47  ------HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K     + +++   F+  L  L+             
Sbjct: 422 PPFTTDQHLVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRL 481

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 482 DGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQS--- 537

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +   + R  + G K+ V V+ LI +NT+DE ++++   K  + ++++   +
Sbjct: 538 --DLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGR 588


>gi|330944191|ref|XP_003306326.1| hypothetical protein PTT_19456 [Pyrenophora teres f. teres 0-1]
 gi|311316176|gb|EFQ85559.1| hypothetical protein PTT_19456 [Pyrenophora teres f. teres 0-1]
          Length = 1892

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 74/200 (37%), Gaps = 25/200 (12%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIEK--ANA 68
            L+ +   A  + +   K  Q  N    +   +            K+  L+ ++++  AN 
Sbjct: 1264 LEAKTESA--ALTVCNKLPQPTNERTRFTHIEAPSMSRFVTDSGKLAQLDALLKELKAND 1321

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPA 117
              +++ +     +  +++                    +        ++  I +      
Sbjct: 1322 HRVLLYFQMTRMMDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQSDRSIFVFLLSTR 1381

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+       I+   + R  + G  R V VY LI + TI+
Sbjct: 1382 AGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRLGQTRQVTVYRLITRGTIE 1435

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
            E + +R   K  +Q ++++ 
Sbjct: 1436 ERIRKRALQKEEVQRVVISG 1455


>gi|291388024|ref|XP_002710542.1| PREDICTED: chromodomain helicase DNA binding protein 7 [Oryctolagus
            cuniculus]
          Length = 2997

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|223953572|gb|ACN30001.1| chromodomain helicase DNA-binding protein 7 [Vicugna vicugna]
          Length = 3000

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1212 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1271

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1272 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1331

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1332 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1388

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1389 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1441


>gi|301759851|ref|XP_002915762.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like
            [Ailuropoda melanoleuca]
 gi|281345480|gb|EFB21064.1| hypothetical protein PANDA_003773 [Ailuropoda melanoleuca]
          Length = 2995

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1214 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1273

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1274 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1333

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1334 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1390

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1391 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1443


>gi|194214886|ref|XP_001915803.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 7
            (ATP-dependent helicase CHD7) (CHD-7) [Equus caballus]
          Length = 2995

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1215 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1274

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1275 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1334

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1335 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1391

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1392 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1444


>gi|148673732|gb|EDL05679.1| mCG20155 [Mus musculus]
          Length = 2985

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1206 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1265

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1266 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1325

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1326 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1382

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1383 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1435


>gi|124487249|ref|NP_001074886.1| chromodomain-helicase-DNA-binding protein 7 [Mus musculus]
 gi|148877247|sp|A2AJK6|CHD7_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|123228216|emb|CAM16769.1| chromodomain helicase DNA binding protein 7 [Mus musculus]
 gi|123229796|emb|CAM25204.1| chromodomain helicase DNA binding protein 7 [Mus musculus]
          Length = 2986

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1206 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1265

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1266 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1325

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1326 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1382

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1383 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1435


>gi|73999130|ref|XP_544097.2| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            isoform 1 [Canis familiaris]
          Length = 2995

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1215 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1274

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1275 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1334

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1335 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1391

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1392 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1444


>gi|146416597|ref|XP_001484268.1| hypothetical protein PGUG_03649 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1117

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 41/230 (17%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
            Y KF    +L+  L+G+     N  +      ++ N     D           +     
Sbjct: 610 MYEKFLSSEDLHAILKGK----RNMLTGVDTLRKICNHPDLVDRELLLRKKGYNYGIPNK 665

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARL------------------QKAFPQGR 92
             K+  L+ ++   ++     ++       L  L                          
Sbjct: 666 SGKMLVLKGLLQLWQSQGHRTLLFCQTKQMLDILEKLLVNLTRISDGTEYFNYMRMDGST 725

Query: 93  TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + K    +  +N      +        G G+NL  G + ++ +   W+        +  
Sbjct: 726 PISKRQGLVDMFNNNTNYDVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DIQ 779

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G KR + +Y L+   TI+E +  R   K+ + + +L   K+ 
Sbjct: 780 ARERAWRLGQKRDIVIYRLMTAGTIEEKIYHRQIFKTFLTNKILKDPKQR 829


>gi|326431158|gb|EGD76728.1| SNF2 family DNA-dependent ATPase [Salpingoeca sp. ATCC 50818]
          Length = 1797

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 42/218 (19%)

Query: 18   ENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEVH---------------------DEK 55
            ++  + N   +  ++  +L      ++E +     H                       K
Sbjct: 1061 QDASSVNKLRNMIMQLRKLCCHPFLFEEVERAYLEHAAAEMGMDKAALTNGPELWRACGK 1120

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
             + L+ ++ K  A     ++   F S L                     + D     ++ 
Sbjct: 1121 FELLDRMLPKLRAGRHRTLIFSQFTSLLTVLEDYFAAKGIKYLRMDGSTSADDRAELLRL 1180

Query: 104  WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +N       +      + G GLNLQ   + ++ +   W+  +     +     R  + G 
Sbjct: 1181 FNAPDSEYEIFILSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQDRAHRIGQ 1234

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R V V+ L+  N+++E +L+R + K  +   ++ A K
Sbjct: 1235 TREVRVFRLVTVNSVEERILERAKYKLDVDQKVIQAGK 1272


>gi|257467968|ref|ZP_05632064.1| SNF2-related protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062254|ref|ZP_07926739.1| helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313687930|gb|EFS24765.1| helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1030

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 17/204 (8%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y  + ++   ++  E   +        +  QL N    + E+   K     +     +
Sbjct: 815  KLYLAYLKKYKREIASEK-NSLKIFLYITRLRQLCNHPQLFLEDYSGKS-SKLEALLELL 872

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---------DKDPCTIQEWNEGKIPLL 112
               K+    ++V   F   L  ++K  P+  T           +    ++ +N G   + 
Sbjct: 873  EECKSGGHRVLVFSQFTEMLEIIKKNMPENMTYLYLDGKTKAKERIELVENFNSGNEDVF 932

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLN+  G + ++ F  WW+       +E     R  + G K+ V V+ ++A
Sbjct: 933  IISLKAGGSGLNIT-GADTVIHFDPWWN-----SSVEDQATARAYRLGQKKNVNVFKMVA 986

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            + TI+E +      K  +   +L+
Sbjct: 987  KGTIEEKINTIKEGKEELIREILD 1010


>gi|261198361|ref|XP_002625582.1| RSC complex subunit [Ajellomyces dermatitidis SLH14081]
 gi|239594734|gb|EEQ77315.1| RSC complex subunit [Ajellomyces dermatitidis SLH14081]
          Length = 1468

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +          D +G        ++  ++  +L N    ++  +            
Sbjct: 825  KLYKQLATHNKLVVSDGKGGKTGVRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 884

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 885  IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 944

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 945  RSDLLKEFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 998

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L+  + K  +   ++ A K
Sbjct: 999  RAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMDGKVIQAGK 1043


>gi|317036939|ref|XP_001398370.2| chromatin structure-remodeling complex subunit snf2 [Aspergillus
            niger CBS 513.88]
          Length = 1422

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 802  KLYRQLVTHNKMAVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 861

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 862  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDD 921

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 922  RSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 975

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 976  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1020


>gi|268579039|ref|XP_002644502.1| Hypothetical protein CBG14390 [Caenorhabditis briggsae]
 gi|187027870|emb|CAP32941.1| hypothetical protein CBG_14390 [Caenorhabditis briggsae AF16]
          Length = 2938

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 37/222 (16%)

Query: 7    FQRELYCDLQGENIEAFNSASKTV-KCLQLANGAVYYDEEKHWKEVH------------- 52
             Q+ L   L G+      S   T+    +L N    ++  +   +               
Sbjct: 1888 MQKGLL--LDGKTNTGSRSLMNTMVHLRKLCNHPFLFENVEDSCKSFWKSQFISAKDLYR 1945

Query: 53   -DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K++ L+ I+ K       +++ +   + +  ++     G              +   
Sbjct: 1946 VSGKLELLDRILPKLQASGHRVLMFFQMTAMMTIVEDYLAGGNIQYLRLDGSTKTDERGA 2005

Query: 100  TIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N              + G GLNLQ   + ++ F   W+  +           R  
Sbjct: 2006 LLDKFNAPNSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQDRAH 2059

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 2060 RIGQKAEVRVFRLITANSVEEKILASARFKLNVDEKVIQAGK 2101


>gi|302833439|ref|XP_002948283.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
           nagariensis]
 gi|300266503|gb|EFJ50690.1| hypothetical protein VOLCADRAFT_80059 [Volvox carteri f.
           nagariensis]
          Length = 1091

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
             Q++ Y  L  ++I+A N         +  ++  +  N    +                
Sbjct: 410 DMQKKWYAALLQKDIDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLI 469

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ +     + +++       +  L+                       
Sbjct: 470 ENSGKLVLLDKLLPRLKERDSRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTGGDDRD 529

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N+      +      + G G+NL    +I+V +   W+ +     ++   + R 
Sbjct: 530 NMIDEFNKPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ-----MDLQAMDRA 583

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N+I+E V+++   K  +  L++   +
Sbjct: 584 HRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQQGR 626


>gi|294657478|ref|XP_459783.2| DEHA2E10934p [Debaryomyces hansenii CBS767]
 gi|199432721|emb|CAG88022.2| DEHA2E10934p [Debaryomyces hansenii]
          Length = 1157

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 75/234 (32%), Gaps = 45/234 (19%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
            Y KF    +L+  L+G+     N         ++ N     D           +     
Sbjct: 650 LYEKFLSSEDLHAILKGK----RNILMGVDILRKICNHPDLVDREILQRRKNYNYGNPAK 705

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------------------F 88
             K++ L+ ++   +      ++       L  L+K                        
Sbjct: 706 SGKLQVLKNLLQLWQMQGHRTLLFCQTKQMLDILEKFVTNLPSLNENGEEVRGTFNYLRM 765

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                + +    +  +N + +  +        G G+NL  G + ++ +   W+       
Sbjct: 766 DGSTNIGRRQALVDTFNEDKQYHVFLLTTKVGGLGINLT-GADRVIIYDPDWNPST---- 820

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     R  + G K+ + +Y L+   +I+E +  R   K+ + + +L   K+ 
Sbjct: 821 -DIQARERAWRLGQKKDITIYRLMTAGSIEEKIYHRQIFKTFLTNKILKDPKQR 873


>gi|295674629|ref|XP_002797860.1| DNA ATP-dependent helicase [Paracoccidioides brasiliensis Pb01]
 gi|226280510|gb|EEH36076.1| DNA ATP-dependent helicase [Paracoccidioides brasiliensis Pb01]
          Length = 1614

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1312 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1371

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1372 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1425

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1426 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVI 1462


>gi|212535682|ref|XP_002147997.1| SNF2 family helicase/ATPase (Ino80), putative [Penicillium marneffei
            ATCC 18224]
 gi|210070396|gb|EEA24486.1| SNF2 family helicase/ATPase (Ino80), putative [Penicillium marneffei
            ATCC 18224]
          Length = 2500

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 2213 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 2272

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +  +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 2273 TVADFQHRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 2326

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 2327 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 2365


>gi|320164602|gb|EFW41501.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 2139

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 38/221 (17%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------------- 54
            +  +    Q + +   N     ++  +  N    +   +                     
Sbjct: 861  KSSMVVQPQQQRVTLMNIL---MELRKCTNHPYLFPGAEPEFAGDSAEVADMQAQSLVQA 917

Query: 55   --KIKALEVIIE--KANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
              K+  L+ ++   +A    +++               S L                   
Sbjct: 918  SGKLVLLDKMLPGLRARGHRVLIFSQMTRVLDILEDYLSHLQMPFCRLDGSTLNTDRQHL 977

Query: 101  IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++N    P+        + G G+NL    + ++ F   ++        +   ++R  +
Sbjct: 978  IDKFNAPNSPIFCFLLSTRAGGLGINLHT-ADTIIMFDSDFNP-----HSDMQALSRAHR 1031

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             G K+ V VY L+  +TI+E +LQR R K  +  +++  L+
Sbjct: 1032 IGQKKPVTVYRLVTSDTIEEGILQRARKKLLLGHVVVEKLE 1072


>gi|297791319|ref|XP_002863544.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309379|gb|EFH39803.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2251

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          E    + +HD +
Sbjct: 943  EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMR 1002

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + + +     +++       L  L+                    + 
Sbjct: 1003 IKASAKLTLLHSMLKVLQKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVA 1062

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      +CG G+NL    + ++ +   ++        +   + 
Sbjct: 1063 DRQAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1116

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1117 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1158


>gi|154316737|ref|XP_001557689.1| hypothetical protein BC1G_03786 [Botryotinia fuckeliana B05.10]
 gi|150845398|gb|EDN20591.1| hypothetical protein BC1G_03786 [Botryotinia fuckeliana B05.10]
          Length = 1130

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 426 VKWYKKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 485

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   K   + +++    +  L  L+               G   +  
Sbjct: 486 VFNAGKMVMLDKLLTRMKKAGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTAHEDR 545

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 546 IQAIDDYNKPDSEKFVFLLTTRAGGLGINLTS-ADIVVLYDSDWNPQA-----DLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  + +N I+E VL+R   K  +  L++   +
Sbjct: 600 AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGR 643


>gi|194386250|dbj|BAG59689.1| unnamed protein product [Homo sapiens]
          Length = 567

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   +  S      +L N      ++   +E         
Sbjct: 242 ELYKRFLRQAKPAEELLEGKMS-VSPLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDL 300

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 301 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 360

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 361 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 419

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 420 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 468


>gi|149604225|ref|XP_001512827.1| PREDICTED: similar to chromatin remodeling factor CHROM1 isoform 1
            [Ornithorhynchus anatinus]
          Length = 2885

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHD- 53
            K Y     + +  L          N  +  ++  +  N               ++E H  
Sbjct: 1108 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRETHSP 1167

Query: 54   --------------EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 TAPDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++   
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337


>gi|326479975|gb|EGE03985.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Trichophyton equinum CBS 127.97]
          Length = 1352

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFLRFRGMKYLRLDGATKSDD 897

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +NE +           + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 898 RSDLLRRFNEPESEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|332007781|gb|AED95164.1| chromatin remodeling 4 protein [Arabidopsis thaliana]
          Length = 2223

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 76/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          E    + +HD +
Sbjct: 940  EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMR 999

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + +       +++       L  L+                    + 
Sbjct: 1000 IKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVA 1059

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      +CG G+NL    + ++ +   ++        +   + 
Sbjct: 1060 DRQAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1113

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1114 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|322805986|emb|CBZ03553.1| swf/SNF family helicase [Clostridium botulinum H04402 065]
          Length = 1077

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNIKYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|320166021|gb|EFW42920.1| Ercc6 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1576

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
              K+  ++ ++    A    +++       L  +++         +              
Sbjct: 1038 SGKLVVIDSLLRMWHAQGHRVLLFAQTRQTLDIIERWVRSTAYRYRRMDGTTPIRSRQQM 1097

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + E+N    + L        G G+NL  G + +V F   W+        +     R  + 
Sbjct: 1098 VDEFNTNESLFLFLLTTKVGGLGVNLT-GADRVVIFDPDWNPST-----DTQARERAWRI 1151

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V VY L+   TI+E +  R   K  + + +L+  ++ 
Sbjct: 1152 GQKRQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLSDPRQR 1193


>gi|317138661|ref|XP_001817058.2| DNA helicase ino80 [Aspergillus oryzae RIB40]
          Length = 1690

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1397 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1456

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1457 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1510

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1511 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1549


>gi|170111204|ref|XP_001886806.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164638164|gb|EDR02443.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 928

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 75/212 (35%), Gaps = 34/212 (16%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEK--A 66
            +      +  ++  ++ +    +D       +             K+  L+ ++ +   
Sbjct: 609 KVNNMKLQNAVMQLRKVCSHPFLFDWPVDPDTMMPILGEELVNASGKMMVLDRLLRELFR 668

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIP---- 110
               +++   F + L  ++                    +++     +  N G  P    
Sbjct: 669 RKHKVLLFSQFTTMLNIIEDWATDYMGWNICRIDGSSKPMERREAMNRFQNGGDDPDAPS 728

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL    + ++F+   W+ +     ++     R  + G  + V ++ L
Sbjct: 729 LFLLSTRAGGLGINLVA-ADTVIFYDQDWNPQ-----MDAQAQDRAHRIGQTKPVLIFRL 782

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++ +TI+  ++QR   K  ++ L++   K + 
Sbjct: 783 VSAHTIETKIMQRATEKRKLEALVIAKGKFKM 814


>gi|145358870|ref|NP_199293.2| CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding / protein
            binding / zinc ion binding [Arabidopsis thaliana]
          Length = 2242

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 76/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          E    + +HD +
Sbjct: 940  EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMR 999

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + +       +++       L  L+                    + 
Sbjct: 1000 IKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVA 1059

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      +CG G+NL    + ++ +   ++        +   + 
Sbjct: 1060 DRQAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1113

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1114 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1155


>gi|119498509|ref|XP_001266012.1| SNF2 family helicase/ATPase (Ino80), putative [Neosartorya fischeri
            NRRL 181]
 gi|206558086|sp|A1CZE5|INO80_NEOFI RecName: Full=Putative DNA helicase ino80
 gi|119414176|gb|EAW24115.1| SNF2 family helicase/ATPase (Ino80), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1708

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1416 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1475

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1476 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1529

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1530 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1568


>gi|2660669|gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis thaliana]
 gi|9758384|dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana]
          Length = 2228

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 76/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          E    + +HD +
Sbjct: 926  EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMR 985

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + +       +++       L  L+                    + 
Sbjct: 986  IKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVA 1045

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      +CG G+NL    + ++ +   ++        +   + 
Sbjct: 1046 DRQAAIARFNQDKNRFVFLLSTRACGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1099

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1100 RAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1141


>gi|168209499|ref|ZP_02635124.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
 gi|170712417|gb|EDT24599.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 1067

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +   +     K+  ++ I++    +   I++
Sbjct: 861  EKSGRDKINLFAYLTKLREICLDPSLVVPDYTGE---SSKLTVVKEIVKDASESGKKILL 917

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 918  FSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 977

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 978  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1031

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1032 MQEDKRELIQSLMDG 1046


>gi|326468544|gb|EGD92553.1| SNF2 family ATP dependent chromatin remodeling factor snf21
           [Trichophyton tonsurans CBS 112818]
          Length = 1352

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +          D +G        ++  ++  +L N    +D  +            
Sbjct: 778 KLYKQLVTHNKLAVSDGKGGKTPVRGLSNMLMQLRKLCNHPFVFDSVEEELNPGKATNDL 837

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K   +   +++ +     +  ++                     
Sbjct: 838 IWRTAGKFELLDRILPKFFASGHRVLMFFQMTQIMNIMEDFLRFRGMKYLRLDGATKSDD 897

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +NE             + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 898 RSDLLRRFNEPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 951

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 952 RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 996


>gi|150864381|ref|XP_001383167.2| chromatin remodeling complex Adenosinetriphosphatase
           [Scheffersomyces stipitis CBS 6054]
 gi|149385637|gb|ABN65138.2| chromatin remodeling complex Adenosinetriphosphatase
           [Scheffersomyces stipitis CBS 6054]
          Length = 1222

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 83/228 (36%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q + Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 541 EMQIQWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTND 600

Query: 47  HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
                +  K+  L+ +++K     + +++    +  L  L+                 + 
Sbjct: 601 EHLVFNSGKMVILDKMLQKFKSEGSRVLIFSQMSRLLDILEDYCYLRDYSYCRIDGSTSH 660

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I ++N+ +    +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 661 EDRIEAIDQYNDPESDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 714

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V VY  + +N I+E VL R   K  +  L++   ++
Sbjct: 715 MDRAHRIGQKKQVKVYRFVTENAIEEKVLDRAAQKLRLDQLVIQQGRQ 762


>gi|323453618|gb|EGB09489.1| hypothetical protein AURANDRAFT_71326 [Aureococcus anophagefferens]
          Length = 1707

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 29  TVKCLQLANGAVYYDEE----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N    +  +             K   L+ ++ K       +++     + + 
Sbjct: 679 LMQLRKCCNHPFLFRTDAWRVDESLVRSSGKFLLLDSMLPKLKAAGHRVLLFSQMTALMD 738

Query: 83  RLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            L+  F                D+    +  +N+   P  +      + G GLNL    +
Sbjct: 739 LLEDFFALRDYDYLRLDGSTAADERERRMARFNDPSSPAFVFLLSTRAGGLGLNL-ASAD 797

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +V F   W+      M++     R  + G K  V V+ LI+ + ++E +LQR   K  +
Sbjct: 798 TVVIFDSDWNP-----MMDAQAQDRAHRIGQKNDVRVFRLISTSPVEERILQRATDKLNM 852

Query: 191 QDLLLNALK 199
            +L++ A K
Sbjct: 853 NNLIVEAGK 861


>gi|119612877|gb|EAW92471.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_c [Homo sapiens]
          Length = 1616

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1114 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1173

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1174 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1232

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1233 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1282


>gi|149604227|ref|XP_001512847.1| PREDICTED: similar to chromatin remodeling factor CHROM1 isoform 2
            [Ornithorhynchus anatinus]
          Length = 2876

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEE-----KHWKEVHD- 53
            K Y     + +  L          N  +  ++  +  N               ++E H  
Sbjct: 1108 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRETHSP 1167

Query: 54   --------------EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 TAPDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++   
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337


>gi|119607236|gb|EAW86830.1| chromodomain helicase DNA binding protein 7, isoform CRA_a [Homo
            sapiens]
 gi|119607239|gb|EAW86833.1| chromodomain helicase DNA binding protein 7, isoform CRA_a [Homo
            sapiens]
          Length = 3011

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1231 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1290

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1291 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1350

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1351 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1407

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1408 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1460


>gi|320533736|ref|ZP_08034345.1| hypothetical protein HMPREF9057_02235 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134049|gb|EFW26388.1| hypothetical protein HMPREF9057_02235 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 199

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 16/169 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------F 88
                     +     KI+ L   ++   +     ++   F   L+ +++          
Sbjct: 24  PAKGQRGPGRRPSPSAKIQVLLEHLDPIISEGHRALIFSQFTRYLSGVREHLEAAGVRTT 83

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +       I  +  G+  +      + G GL L    + +     WW+ +  +Q +
Sbjct: 84  YLDGSTPDRQRVIDAFRAGQADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAV 142

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R       + G  + V VY L++ +TI+E V+     K+ +   ++  
Sbjct: 143 DR-----THRIGQDKPVMVYRLVSADTIEEKVMALKEKKAELFARVVEG 186


>gi|123123062|emb|CAM19310.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Mus musculus]
          Length = 1033

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 392 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 43  --DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +  K+ AL+ ++   K   + +++       L  L+             
Sbjct: 452 PPYTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRL 511

Query: 98  ---------------------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I  +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVELLGQREAIDAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LNALK 199
           +   +
Sbjct: 626 IQQGR 630


>gi|149692054|ref|XP_001503533.1| PREDICTED: INO80 complex homolog 1 (S. cerevisiae) [Equus caballus]
          Length = 1561

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1088 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1147

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1148 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1206

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1207 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256



 Score = 35.1 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 789 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 848

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L           +L       +E     +  +   PA   +
Sbjct: 849 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQESLFHRKGVNEESCFSFLRFIDVSPAEMAN 908

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 909 LMLQGLLARWLALF 922


>gi|126309162|ref|XP_001369227.1| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            [Monodelphis domestica]
          Length = 2131

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1162 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1221

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1222 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1281

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1282 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1335

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1336 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1377


>gi|224071533|ref|XP_002303505.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840937|gb|EEE78484.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2327

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 77/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          +    + +H+ +
Sbjct: 997  EYYRAMLTKNYQMLRNIGKGVAQQSMLNIVMQLRKICNHPYLIPGTEPDSGSLEFLHEMR 1056

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + I       +++       L  L+                   ++ 
Sbjct: 1057 IKASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVS 1116

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 1117 DRQTAIARFNQDKSRFVFLLSTRSCGLGINL-ASADTVIIYDSDFNP-----HSDIQAMN 1170

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  + + VY L+ + +++E +LQ  R K  +  L +N
Sbjct: 1171 RAHRIGQSKRLLVYRLVVRASVEERILQLARKKLVLDQLFVN 1212


>gi|255726422|ref|XP_002548137.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida tropicalis MYA-3404]
 gi|240134061|gb|EER33616.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida tropicalis MYA-3404]
          Length = 1286

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 746 LYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVEAVLNSSRLTNDL 805

Query: 53  ----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ I+   K +   +++ +     +  ++               G   + 
Sbjct: 806 IWRVSGKFELLDRILPKFKKSGHRVLMFFQMTQVMDIMEDFLRWRNMKYLRLDGGTKAED 865

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + +V F   W+  +     +     
Sbjct: 866 RQDMLKVFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQ-----DLQAQD 919

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 920 RAHRIGQKNEVRILRLITNDSVEEMILERAHQKLDIDGKVIQAGK 964


>gi|156051220|ref|XP_001591571.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980]
 gi|154704795|gb|EDO04534.1| hypothetical protein SS1G_07017 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1410

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVHD----- 53
           + Y +        +         +       ++  +L N    + E +     ++     
Sbjct: 777 RLYKQMVTHNKLVVSDGKGGKTGAKGLSNMIMQLRKLCNHPFVFREVEDQMNPNNFINDT 836

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ I+ K       +++ +   + +  + +                  D 
Sbjct: 837 LWRSAGKFELLDRILPKYQATGHRVLMFFQMTAIMDIMGEFLDYRGIKFMRLDGTTKSDD 896

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 897 RSLLLKEFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 950

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A +
Sbjct: 951 RAHRIGQKNEVRILRLISSNSVEEKILERAKFKLDMDGKVIQAGR 995


>gi|110800073|ref|YP_695594.1| putative helicase [Clostridium perfringens ATCC 13124]
 gi|110674720|gb|ABG83707.1| putative helicase [Clostridium perfringens ATCC 13124]
          Length = 1069

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +   +     K+  ++ I++    +   I++
Sbjct: 863  EKSGRDKINLFAYLTKLREICLDPSLVVPDYTGE---SSKLTVVKEIVKDASESGKKILL 919

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 920  FSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 979

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 980  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1033

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1034 MQEDKRELIQSLMDG 1048


>gi|307727814|ref|YP_003911027.1| SNF2-related protein [Burkholderia sp. CCGE1003]
 gi|307588339|gb|ADN61736.1| SNF2-related protein [Burkholderia sp. CCGE1003]
          Length = 1227

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 16/158 (10%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQ 102
              K+  L  ++ +       +++   F   L+ + +A  +                  +Q
Sbjct: 1052 SAKLDLLLSMLPELIEEGRRVLLFSQFTGMLSLIAQALDEAAIAYVILTGDTADRITPVQ 1111

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             + +G++PL      + G GLNL    + ++ +  WW+        E     R  + G  
Sbjct: 1112 RFQQGEVPLFLISLKAGGVGLNLTA-ADTVIHYDPWWNPAA-----ENQATDRAHRLGQD 1165

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + VFVY LIA  +I+E +++    K+ + D +L+    
Sbjct: 1166 KPVFVYKLIAAGSIEEKIVELQEQKAGLADSILSEDAA 1203


>gi|156846474|ref|XP_001646124.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116797|gb|EDO18266.1| hypothetical protein Kpol_1039p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1385

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVH---- 52
           + Y +        +      A         +K ++  ++ N    +DE +          
Sbjct: 759 QLYQQMLNHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPTRGNS 818

Query: 53  ------DEKIKALEVIIEKA--NAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                   K + L+ ++ K   +   +++ +           F                 
Sbjct: 819 TLLYRVSGKFELLDRVLPKFKASGHRVLIFFQMTQVMDIMEDFLRMRDLKYMRLDGATKA 878

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 879 EDRTDMLKVFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 932

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 933 QDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGK 979


>gi|54112403|ref|NP_060250.2| chromodomain-helicase-DNA-binding protein 7 [Homo sapiens]
 gi|148877246|sp|Q9P2D1|CHD7_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 7;
            Short=CHD-7; AltName: Full=ATP-dependent helicase CHD7
 gi|119607240|gb|EAW86834.1| chromodomain helicase DNA binding protein 7, isoform CRA_d [Homo
            sapiens]
 gi|225000838|gb|AAI72443.1| Chromodomain helicase DNA binding protein 7 [synthetic construct]
          Length = 2997

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|297682946|ref|XP_002819164.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like [Pongo
            abelii]
          Length = 2997

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|301095371|ref|XP_002896786.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108669|gb|EEY66721.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1092

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 80/232 (34%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------- 42
           K Y    + QRE Y  +   +    N+          +  ++  ++ N    +       
Sbjct: 383 KLYVGLSEMQREWYMRVLHRDATHLNAIGGSDRVRLLNILMQLRKVCNHPYLFEGAEPGP 442

Query: 43  -DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
             +E      +  K+  L  ++   +A  + +++     S +  L+              
Sbjct: 443 PYQEGPHLWENCGKMTLLHKLLPKLQAQGSRVLIFCQMTSMMDILEDYMRYFSHDYCRLD 502

Query: 96  ------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      ++E+NE             + G G+NL    +I++ F   W+ +     
Sbjct: 503 GSTKGEDRDNMMEEFNEPGSSKFCFLLSTRAGGLGINL-ATADIVILFDSDWNPQ----- 556

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G  + V V+  I   T++E +++R   K  +   ++   +
Sbjct: 557 VDLQAMDRAHRIGQTKIVRVFRFITDGTVEEKIVERAERKLYLDAAIIQQGR 608


>gi|256072789|ref|XP_002572716.1| helicase [Schistosoma mansoni]
 gi|238657880|emb|CAZ28948.1| helicase, putative [Schistosoma mansoni]
          Length = 2395

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 19/182 (10%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            K  QL         +    +    K++ L  ++ +  +    +++       L  L++  
Sbjct: 1323 KLHQLVMSCRIQFPDPRLIQYDCGKLQRLHSLLRELKSGNHRVLIFTQMARMLDILEQFL 1382

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I +      S G G+NL  G + ++F+  
Sbjct: 1383 AYHGHRYLRLDGTTKVEQRQVLMERFNQDSQIFVFILSTRSGGLGINLT-GADTVIFYDS 1441

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1442 DWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILRKANQKRFLSDVAIEG 1496

Query: 198  LK 199
             K
Sbjct: 1497 GK 1498


>gi|323452051|gb|EGB07926.1| hypothetical protein AURANDRAFT_26999 [Aureococcus anophagefferens]
          Length = 639

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSA---------SKTVKCLQLANGAVYY------ 42
           +K Y    + QR  Y  +  ++    N+          +  ++  ++ N    +      
Sbjct: 357 VKLYIGMTEMQRLWYTKILSKDAHTLNALGGPDRVQLLNILMQLRKVCNHPYLFEGAEPG 416

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAF 88
               +      +  K+  +  ++ K  A  + +++       L                 
Sbjct: 417 PPFMDGPHLWENTGKLVLMSKLLPKLMAQDSRVLIFSQMTRMLDILEDYMRLNQYKYCRI 476

Query: 89  PQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + D     +  +N              + G G+NL    +I+V +   W+ +    
Sbjct: 477 DGSTSGDDRDSQMDVFNAPGSEKFAFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ---- 531

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  + + T++E +++R   K  +   ++   +
Sbjct: 532 -VDLQAMDRAHRIGQTKPVTVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGR 583


>gi|322825988|gb|EFZ30789.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1044

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 49/218 (22%)

Query: 26  ASKTVKCLQLANGAVYYDE--------------------------EKHWKEVHDEKIK-- 57
                   +L N    + E                               E    K+   
Sbjct: 643 LVLISALRKLCNHMDLFYEAVLNSSKEEVGEGRGIPKSVLPKGYKSGTLSEAAGGKMHFV 702

Query: 58  --ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
              L+ +    +   +++  +F   L  +     Q             + +    +  +N
Sbjct: 703 SLMLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFN 762

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +      + G GLNL  G N L+ F   W+        +   + R  + G K+
Sbjct: 763 VPESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKK 816

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VF+Y L++  +I+E + QR  +K  +   +++ +K +
Sbjct: 817 RVFIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSD 853


>gi|307136401|gb|ADN34210.1| chromatin remodeling complex subunit [Cucumis melo subsp. melo]
          Length = 2374

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 76/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          E    + +H+ +
Sbjct: 1055 EYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSVEFLHEMR 1114

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + I       +++       L  L+                   ++ 
Sbjct: 1115 IKASAKLTLLHSMLKILHKEGHRVLLFSQMTKLLDILEDYLTIEFGPKTYERVDGSVSVA 1174

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 1175 DRQAAITRFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1228

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1229 RAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1270


>gi|291403204|ref|XP_002718017.1| PREDICTED: INO80 complex homolog 1 [Oryctolagus cuniculus]
          Length = 1559

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1086 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1145

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1204

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1205 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|119607237|gb|EAW86831.1| chromodomain helicase DNA binding protein 7, isoform CRA_b [Homo
            sapiens]
          Length = 2996

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|71651467|ref|XP_814411.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70879380|gb|EAN92560.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1047

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 49/218 (22%)

Query: 26  ASKTVKCLQLANGAVYYDE--------------------------EKHWKEVHDEKIK-- 57
                   +L N    + E                               E    K+   
Sbjct: 643 LVLISALRKLCNHMDLFYEAVLNSSKEEVREGHGIPKSVLPKGYKSGTLSEAAGGKMHFV 702

Query: 58  --ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
              L+ +    +   +++  +F   L  +     Q             + +    +  +N
Sbjct: 703 SLMLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFN 762

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +      + G GLNL  G N L+ F   W+        +   + R  + G K+
Sbjct: 763 VPESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKK 816

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VF+Y L++  +I+E + QR  +K  +   +++ +K +
Sbjct: 817 RVFIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSD 853


>gi|71662508|ref|XP_818260.1| DNA repair and recombination protein RAD54 [Trypanosoma cruzi
           strain CL Brener]
 gi|70883500|gb|EAN96409.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
           cruzi]
          Length = 1045

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 49/218 (22%)

Query: 26  ASKTVKCLQLANGAVYYDE--------------------------EKHWKEVHDEKIK-- 57
                   +L N    + E                               E    K+   
Sbjct: 643 LVLISALRKLCNHMDLFYEAVLNSSKEEVREGRGLPKSVLPKGYKSGTLSEAAGGKMHFV 702

Query: 58  --ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
              L+ +    +   +++  +F   L  +     Q             + +    +  +N
Sbjct: 703 SLMLDELRNNGDRDKLVIVSNFTQTLDVIANMCRQKRISFFQLDGSMPVKRRQEVVDRFN 762

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +      + G GLNL  G N L+ F   W+        +   + R  + G K+
Sbjct: 763 VPESQEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKK 816

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VF+Y L++  +I+E + QR  +K  +   +++ +K +
Sbjct: 817 RVFIYRLLSAGSIEEKIYQRQVSKQGLSANVVD-MKSD 853


>gi|296809211|ref|XP_002844944.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma otae CBS 113480]
 gi|238844427|gb|EEQ34089.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
            [Arthroderma otae CBS 113480]
          Length = 1660

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1373 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1432

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1433 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1486

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1487 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1525


>gi|320166126|gb|EFW43025.1| lymphoid specific helicase variant4 [Capsaspora owczarzaki ATCC
           30864]
          Length = 835

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 28/191 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHD---------EKIKALEVIIE--KANAAPIIVAYHF 77
            ++  +  N     +       +            K++ L+ ++   +     +++    
Sbjct: 594 LMQLRKCCNHPYLLNFPLDSAGLPRVDEELIQACGKLRLLDELLPALRRKGHKVLIFSQM 653

Query: 78  NSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  LQ  F    T                 I+ +N + ++        + G G+NL 
Sbjct: 654 TRMLDLLQDYFELRNTAVCRLDGAVSLADRQEQIRSFNSDPEVFAFLLSTRAGGLGINL- 712

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++ +   W+ +      +     R  + G  + V VY L+  NT+++ +++R   
Sbjct: 713 IAADTVILYDSDWNPQA-----DLQAQDRCHRIGQTKPVIVYRLVTANTVEQRIIERAMA 767

Query: 187 KSTIQDLLLNA 197
           K  ++ L+++ 
Sbjct: 768 KRKLEKLVIHE 778


>gi|296226562|ref|XP_002758984.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like isoform 1
            [Callithrix jacchus]
 gi|296226564|ref|XP_002758985.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like isoform 2
            [Callithrix jacchus]
          Length = 2994

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|226290625|gb|EEH46109.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb18]
          Length = 1332

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +        +             S   ++  +L N    ++  +            
Sbjct: 691 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 750

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                 K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 751 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 810

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 811 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 864

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 865 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 909


>gi|121712698|ref|XP_001273960.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus clavatus
            NRRL 1]
 gi|206558079|sp|A1C9W6|INO80_ASPCL RecName: Full=Putative DNA helicase ino80
 gi|119402113|gb|EAW12534.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1707

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1417 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1476

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                      I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1477 TVADFQQRPDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1530

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1531 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1569


>gi|72012428|ref|XP_783733.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
 gi|115973296|ref|XP_001183354.1| PREDICTED: similar to putative recombination factor GdRad54
           [Strongylocentrotus purpuratus]
          Length = 834

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 82/230 (35%), Gaps = 42/230 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------ 44
            Y ++ + +  + + +     ++ S      +L N      +                  
Sbjct: 514 IYQQYVKAMMKECRMKTQGKVSTLSAITHLKKLCNHPALVYDKCVSSKDGFHDMLQNFPP 573

Query: 45  ---EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP--------- 89
               K  +     K++ L+ I+   + +++  +++  ++   L   ++            
Sbjct: 574 GYNNKQLRPELSGKMQVLDYILAITKTSSSDKVVLVSNYTQTLDVFEQLCRLRGYLFVRL 633

Query: 90  -QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++ K    +  +N    P  +      + G GLNL  G N LV F   W+      
Sbjct: 634 DGSMSIKKRAKVVDSFNNPNSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN--- 689

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   + R  + G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 690 --DDQAMARVWRDGQKKRCFIYRLLATGTIEEKIFQRQAHKKALSSCVVD 737


>gi|313230046|emb|CBY07750.1| unnamed protein product [Oikopleura dioica]
          Length = 1656

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 86/238 (36%), Gaps = 48/238 (20%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEV------------- 51
             Q+ LY +     ++  N+        +L N    V       ++ +             
Sbjct: 1361 LQKRLYEEFTRSKLKKRNATLAIQYLQKLCNHPTLVLTSAHPDYQSIMTDLDRNGSSIRD 1420

Query: 52   --HDEKIKALEVIIEKA----------NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--- 96
              H  KIKAL+ ++ +           +    ++     S L  +++   +   L     
Sbjct: 1421 IEHAPKIKALKQLLTECGIGQRNGSVVSEHRALIFCQHKSMLDIIERDLFKSNQLPSVSF 1480

Query: 97   -----------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                           +  +N +  I +L       G GLNL  G ++++F    W+ +  
Sbjct: 1481 SRLDGSVPAGARHGIVSRFNRDPTIDVLLLTTKVGGLGLNLT-GADVVIFVEHDWNPQ-- 1537

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               ++   + R  + G K+ V VY LI +NT++E ++   + K +I + L++      
Sbjct: 1538 ---MDLQAMDRAHRIGQKKTVNVYRLITRNTVEEKIMGLQKFKLSIANSLVSGDNASM 1592


>gi|289615410|emb|CBI57811.1| unnamed protein product [Sordaria macrospora]
          Length = 1126

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 423 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 482

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  +   + +++    +  L  L+               G   +  
Sbjct: 483 VYNAGKMLVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGGTAHEDR 542

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 543 IAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 596

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 597 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 640


>gi|296214144|ref|XP_002753574.1| PREDICTED: putative DNA helicase INO80 complex homolog 1 [Callithrix
            jacchus]
          Length = 1556

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1084 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1143

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1144 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1202

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1203 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1252


>gi|114620586|ref|XP_519780.2| PREDICTED: chromodomain helicase DNA binding protein 7 [Pan
            troglodytes]
          Length = 3041

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1260 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1319

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1320 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1379

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1380 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1436

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1437 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1489


>gi|38708321|ref|NP_060023.1| putative DNA helicase INO80 complex homolog 1 [Homo sapiens]
 gi|114149322|sp|Q9ULG1|INO80_HUMAN RecName: Full=Putative DNA helicase INO80 complex homolog 1;
            Short=hINO80
 gi|119612875|gb|EAW92469.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|119612876|gb|EAW92470.1| INO80 complex homolog 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|148921591|gb|AAI46786.1| INO80 protein [Homo sapiens]
 gi|168269776|dbj|BAG10015.1| DNA helicase INO80 complex homolog 1 [synthetic construct]
          Length = 1556

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1083 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1142

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1143 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1201

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1202 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|114656423|ref|XP_510320.2| PREDICTED: INO80 complex homolog 1 [Pan troglodytes]
          Length = 1556

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1083 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1142

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1143 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1201

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1202 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|320034589|gb|EFW16533.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1621

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1337 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1396

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1397 TVSDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1450

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1451 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1489


>gi|171686228|ref|XP_001908055.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943075|emb|CAP68728.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1895

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 79/249 (31%), Gaps = 59/249 (23%)

Query: 1    MKQYHKF-QRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHW------- 48
            +K +  F ++E     +     +     +         +L N      +  H        
Sbjct: 1566 LKLFEDFTKKEAKTITEEAGRDDKEAKQHIFQALQYMRKLCNSPALVMKPGHRAYDDTQK 1625

Query: 49   ----------KEVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDL 81
                         H  K+ AL  ++ +                       ++       L
Sbjct: 1626 FLARQGTSLEDPAHAPKLTALRDLLVECGIGVEGQESSDPLYTPIKPHRALIFCQMKEML 1685

Query: 82   ARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q    +G                ++    + ++N +    +L    +  G GLNL  
Sbjct: 1686 DMVQNTVLKGMLPSTQYLRLDGSVEANRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT- 1744

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1745 GADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFK 1799

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1800 IDVASTVVN 1808


>gi|164426583|ref|XP_956548.2| chromatin remodelling complex ATPase chain ISW1 [Neurospora crassa
           OR74A]
 gi|157071396|gb|EAA27312.2| chromatin remodelling complex ATPase chain ISW1 [Neurospora crassa
           OR74A]
          Length = 1126

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 423 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 482

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  +   + +++    +  L  L+               G   +  
Sbjct: 483 VYNAGKMLVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGGTAHEDR 542

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 543 IAAIDEYNKPDSDKFVFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 596

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 597 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 640


>gi|150015858|ref|YP_001308112.1| non-specific serine/threonine protein kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902323|gb|ABR33156.1| Non-specific serine/threonine protein kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 979

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 22/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  + + +   ++          S   K  ++        E+ +       KI+ +  I
Sbjct: 758 VYSNYVKRVKAAMKNNKDGRIEIFSYLTKLREICLDPSLILEDYN---GGSGKIEEVVEI 814

Query: 63  IEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDK-DPCTIQEWN-EGKI 109
           I+    +   I++   F S L R+         +     G+T  K     ++++N    +
Sbjct: 815 IKNHIDSGGKILLFSQFTSALDRIGDRLNKEKIEFFHLSGKTNPKNRIKMVKDFNTNEFV 874

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    N+++ F  WW+       +E     R  + G +  V V  
Sbjct: 875 NVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEAQATDRAHRIGQRDVVEVIK 928

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           L+++ TI+E ++     K  + D +L
Sbjct: 929 LVSKGTIEEKIILLQEDKKQLIDSIL 954


>gi|323449740|gb|EGB05626.1| hypothetical protein AURANDRAFT_959 [Aureococcus anophagefferens]
          Length = 472

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 73/219 (33%), Gaps = 34/219 (15%)

Query: 4   YHKF--QRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           Y     +      L      A    +  +  ++  +       + + +            
Sbjct: 260 YKALLLKDRDQLKLDDRGPAAGGYKSLVNLLMQLRKTCCHPFLFADAEGCDPGETTLEEL 319

Query: 53  ---DEKIKALEVIIEKAN--AAPIIVAYHFNSD----------LARLQKAFPQGRTLDKD 97
                K++ L+ ++ K +     ++V   F S                          + 
Sbjct: 320 VAASGKLRVLDRLLVKLHARKHRVVVFSQFASMVDVLDDYCALRGWPFCRLTGSTNRVQR 379

Query: 98  PCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +NE   PL        + G G+NLQ   + +V +   W+ +      +   + R
Sbjct: 380 VVNVRAFNEPSSPLFLFLMTTRAGGLGINLQS-ADTVVLYDSDWNPQA-----DLQAMAR 433

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V +Y L +Q T +E VLQR + K  + +++
Sbjct: 434 VHRLGQTKTVHIYRLCSQGTAEERVLQRSQKKLFLSNMV 472


>gi|298710164|emb|CBJ31874.1| Probable chromatin remodelling complex ATPase chain [Ectocarpus
           siliculosus]
          Length = 1485

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 69/197 (35%), Gaps = 28/197 (14%)

Query: 25  SASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKI--KALEVIIEKANAAPIIVA 74
             +  ++  +  N    +        D       ++  K+      +         +++ 
Sbjct: 532 ILNIVMQLRKCCNHPYLFAGVEDRKLDPLGDHLIINCGKMVLLDKLLKKLFDKGHRVLIF 591

Query: 75  YHFNSDL---------ARLQKAFPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHG 122
                 L          R +     G T  +     I  +N+      +      + G G
Sbjct: 592 TQMTKMLDIFEDFCVMRRYEYCRIDGNTSYESREDCIDAYNKPDSTKFVFMLSTRAGGLG 651

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ   + ++ +   W+ +      +   + R  + G KR V VY L+ +NT++E V++
Sbjct: 652 INLQT-ADTVILYDSDWNPQA-----DLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVVE 705

Query: 183 RLRTKSTIQDLLLNALK 199
           R + K  +  +++   +
Sbjct: 706 RAQQKLKLDAMIVQQGR 722


>gi|297461261|ref|XP_609360.4| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus]
          Length = 2048

 Score =  101 bits (252), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 995  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1054

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1055 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1114

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1115 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1168

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1169 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1210


>gi|297299473|ref|XP_002805403.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like, partial
            [Macaca mulatta]
          Length = 2990

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1245 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1304

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1305 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1364

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1365 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1421

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1422 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1474


>gi|242011216|ref|XP_002426351.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510428|gb|EEB13613.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 4944

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      +   N  +  ++  +        +  +   ++        
Sbjct: 2366 KYYRGILERNFSFLSKGTTSSNIPNLMNTMMELRKCCIHPYLLNGAEEQIQIDYRNVNGD 2425

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  +N   +++       L  L+      +   +  
Sbjct: 2426 DPDAYFKALIHSSGKMVLVDKLLPKLKSNGHRVLIFSQMVKCLDILEDYLIYRKYSFERI 2485

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +        +      + G G+NL    + ++ +   W+ +    
Sbjct: 2486 DGRIRGDLRQAAIDRFCRPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2541

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V VY LI +NT +  +  +   K  +   +L ++ 
Sbjct: 2542 --DLQAQARCHRIGQQKMVKVYRLICRNTYEREMFDKASLKLGLDKAVLQSMN 2592


>gi|126321078|ref|XP_001368272.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
            [Monodelphis domestica]
          Length = 2999

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1216 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 1275

Query: 55   ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1276 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1336 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1392

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1393 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445


>gi|6330933|dbj|BAA86573.1| KIAA1259 protein [Homo sapiens]
          Length = 1561

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1088 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1147

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1148 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1206

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1207 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1256


>gi|321264716|ref|XP_003197075.1| chromatin remodelling complex ATPase chain [Cryptococcus gattii
           WM276]
 gi|317463553|gb|ADV25288.1| Chromatin remodelling complex ATPase chain, putative [Cryptococcus
           gattii WM276]
          Length = 1096

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYDEEK-------- 46
           + QR+ Y  L  ++I+A N  +             ++  +  N    +D  +        
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                   
Sbjct: 511 QHLVDNAGKMLILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 571 EDRIAAIDEYNAPGSEKFVFLLTTRAGGLGINLVT-ADIVVLFDSDWNPQA-----DLQA 624

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 625 MDRAHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|121708636|ref|XP_001272197.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400345|gb|EAW10771.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1121

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 437 IKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 496

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 497 VFNSGKMVILDKLLARMQRQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTTAHEDR 556

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 557 IAAIDDYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 610

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I ++ I+E VL+R   K  +  L++   + +
Sbjct: 611 AHRIGQTKQVVVFRFITEDAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|242021397|ref|XP_002431131.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516380|gb|EEB18393.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 745

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 79/228 (34%), Gaps = 42/228 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------- 45
              ++ +  +   +   +  + S      +L N      E                    
Sbjct: 427 DALKKTVREEKNSKKGMSLTALSAITTLKKLCNHPDLVYENIMKQTEGFENALKYLPEKY 486

Query: 46  --KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
             K+ +     K+  L+ ++   +      I++  ++   L   +K              
Sbjct: 487 DIKNVRPEMSGKLMFLDTLLALIKATTNDKIVLVSNYTQTLDLFEKLSRFRNYQYVRLDG 546

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ K    ++++N+ +    +      + G GLNL  G N LV F   W+        
Sbjct: 547 SMTIKKRGKVVEKFNDPESKDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN----- 600

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K+  F+Y L++  TI+E + QR   K  +   +++
Sbjct: 601 DDQAMARVWRDGQKKPCFIYRLLSTGTIEEKIFQRQAHKKALSSTVVD 648


>gi|326478017|gb|EGE02027.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1113

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 431 VKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 490

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 491 IDNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 550

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 551 IQAIDEYNRPGSKKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 604

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|326473172|gb|EGD97181.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1113

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 431 VKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 490

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 491 IDNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 550

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 551 IQAIDEYNRPGSKKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 604

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|158292419|ref|XP_313902.4| AGAP005035-PA [Anopheles gambiae str. PEST]
 gi|157016983|gb|EAA09385.4| AGAP005035-PA [Anopheles gambiae str. PEST]
          Length = 1608

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
             K+  L+ ++   K     +++       +  L++                +  ++    
Sbjct: 1126 GKLAVLDSLLARLKEQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISERRDMV 1185

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                N   I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1186 ADFQNRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1239

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + V VY LI + TI+E +LQR R KS IQ +++N   
Sbjct: 1240 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVINGDN 1278


>gi|68144413|gb|AAY86155.1| chromatin-remodelling complex ATPase ISWI2 [Chlamydomonas
           reinhardtii]
          Length = 1086

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  ++++A N         +  ++  +  N    +                
Sbjct: 415 EMQKKWYAALLQKDVDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLV 474

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLAR---------LQKAFPQGRTLDK-DP 98
            +  K+  L+ ++ +       +++       +                  G T  +   
Sbjct: 475 ENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTDGEARD 534

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N       +      + G G+NL    +I+V +   W+ +     ++   + R 
Sbjct: 535 NMIDEFNRPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ-----MDLQAMDRA 588

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N+I+E V+++   K  +  L++   +
Sbjct: 589 HRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQQGR 631


>gi|329947496|ref|ZP_08294696.1| protein, SNF2 family [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328524738|gb|EGF51795.1| protein, SNF2 family [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1205

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 69/191 (36%), Gaps = 27/191 (14%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVA 74
            G+ ++   +A+   +  + A G                K++AL   +    +     +V 
Sbjct: 1000 GKGMKGKAAAASVKRQRRPARGPS-----------PSAKVEALLEHLRPILSEGHRALVF 1048

Query: 75   YHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
              F   L+ +++              +       I  +  G+  +      + G GL L 
Sbjct: 1049 SQFTRYLSGVREHLEDAGVRTAYMDGSTPNRQDVIDAFRAGEADVFLISLKAGGFGLTLT 1108

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +     WW+ +  +Q ++R       + G  + V VY L++ +TI+E V+     
Sbjct: 1109 E-ADYVFLLDPWWNPQAEEQAVDR-----THRIGQDKPVMVYRLVSADTIEEKVMALKEK 1162

Query: 187  KSTIQDLLLNA 197
            K+ +   ++  
Sbjct: 1163 KAELFARVVEG 1173


>gi|110803396|ref|YP_698309.1| DNA/RNA helicase, SNF2 [Clostridium perfringens SM101]
 gi|110683897|gb|ABG87267.1| putative helicase [Clostridium perfringens SM101]
          Length = 1069

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +         K+  ++ I++    +   I++
Sbjct: 863  EKSGRDKINLFAYLTKLREICLDPSLVVPDYK---GGSSKLTVVKEIVKDASESGKKILL 919

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 920  FSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 979

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 980  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1033

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1034 MQEDKRELIQSLMDG 1048


>gi|328698146|ref|XP_001952559.2| PREDICTED: DNA excision repair protein ERCC-6 [Acyrthosiphon pisum]
          Length = 1136

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 61/195 (31%), Gaps = 23/195 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHW----KEVHDEKIKALEVII--EKANAAPIIVAYHF 77
                  +   + N    +                K+  +E ++   K     +++    
Sbjct: 575 KVFVGISRLRTICNHPDIFQTNLETGAFGYWKKSGKMIVVEALLKMWKKQGHRVLLFTQS 634

Query: 78  NSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L   QK   +                    I ++N +  I ++       G G+NL 
Sbjct: 635 VKMLNIFQKFIIEQNYSYLKLEGATSIGSRQPIINKFNKDPSIFVMILTTKVGGLGVNL- 693

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G + ++ F   W+        +     R  + G   +V +Y L+   TI+E +  R   
Sbjct: 694 IGADRVIIFDPDWNPAT-----DLQARERAWRIGQTNSVTIYRLLTAGTIEEKIYHRQIF 748

Query: 187 KSTIQDLLLNALKKE 201
           K  + + +L   K+ 
Sbjct: 749 KQFLSNKVLVDPKQR 763


>gi|307211542|gb|EFN87620.1| Chromatin-remodeling complex ATPase chain Iswi [Harpegnathos
           saltator]
          Length = 1008

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 360 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 419

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K       ++V       L  L+             
Sbjct: 420 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLVFSQMTRMLDILEDYCHWRCFQYCRL 479

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 480 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 534

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 535 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 586


>gi|168061453|ref|XP_001782703.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162665796|gb|EDQ52468.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2113

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 32/226 (14%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y    ++ Y  L   N      +     +    + N    +     E     E+     
Sbjct: 1134 LYGAILKKNYKQLNRGNTTGKKRSLNFILMDLKMVCNHPYLFPGKEPEHGDADELFRLLI 1193

Query: 53   --DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K++ L  ++   K     +++     S L  L+                       
Sbjct: 1194 TASGKLQVLAKLLPRLKEGGHRVLLFSQMKSMLDILEDFLSHLDYKFCRIDGSTPASGRQ 1253

Query: 99   CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I ++N     + +      + G G+NL    + ++ +   ++       ++     R 
Sbjct: 1254 KQIADFNSANSDVFIFLISTRAGGLGINLPS-ADTVIIYDPDFNP-----FVDLQAQARA 1307

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + G +  V VY LI + +++E + +R R K  +++L++++ +K+T
Sbjct: 1308 HRIGQRNVVLVYQLITKCSVEEKITERSRQKLAMENLVMSSSEKDT 1353


>gi|311258360|ref|XP_003127576.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Sus
            scrofa]
          Length = 1824

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 920  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 979

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 980  SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1039

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1040 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1093

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1094 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1135


>gi|119181996|ref|XP_001242158.1| hypothetical protein CIMG_06054 [Coccidioides immitis RS]
 gi|121937034|sp|Q1DUF9|INO80_COCIM RecName: Full=Putative DNA helicase INO80
          Length = 1662

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1378 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1437

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1438 TVSDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1491

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1492 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1530


>gi|322694382|gb|EFY86213.1| chromatin remodelling complex ATPase chain ISW1 [Metarhizium
           acridum CQMa 102]
          Length = 1120

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 430 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 489

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+               G   +  
Sbjct: 490 VYNAGKMAVLDKLLVRLQKQGSRVLIFSQMSRLLDILEDYCVFRDYKYCRIDGGTAHEDR 549

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 550 IAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQA-----DLQAMDR 603

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 604 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 647


>gi|28950292|emb|CAD70746.1| related to DNA-dependent ATPase DOMINO B [Neurospora crassa]
          Length = 1955

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +   N   +++ +     +  +++                    +  
Sbjct: 1650 DSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1709

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1710 TVADFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1763

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1764 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1800


>gi|255947266|ref|XP_002564400.1| Pc22g03590 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591417|emb|CAP97647.1| Pc22g03590 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1100

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 80/227 (35%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
           + QR  Y  +  ++I+A N A+             ++  +  N    +            
Sbjct: 429 EMQRRWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 488

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++++     + +++    +  L  L+                   
Sbjct: 489 EHLVFNSGKMVILDKLLKRMQADGSRVLIFSQMSRVLDILEDYCCFRDYNYCRIDGTTAH 548

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I ++N+      +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 549 EDRIAAIDDYNKPGSDKFVFLLTTRAGGLGINLTS-ADIVVLFDSDWNPQA-----DLQA 602

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G  + V V+  I +  I+E VL+R   K  +  L++   +
Sbjct: 603 MDRAHRIGQTKQVKVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGR 649


>gi|167522321|ref|XP_001745498.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775847|gb|EDQ89469.1| predicted protein [Monosiga brevicollis MX1]
          Length = 817

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD---------EKIK 57
             R          +   +  ++ ++  ++ N     +        +           K+K
Sbjct: 530 LSRAELAQRNSSAVVNVSLQNRLMQLRKVCNHPYLIEYPLTATGDYRIDEALVQQGGKLK 589

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEW- 104
            L+ ++   KA    +++       L  LQ                    +    + ++ 
Sbjct: 590 ILDQLLPRIKAEGRKVLIFSQMTKMLDILQDYCWLRDYGFVRLDGSVHYTEREEALDKFA 649

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GLNL    +  + +   W+ ++     +     R  + G +  
Sbjct: 650 KDSDTFIFLLSTRAGGLGLNLVS-ADTCIIYDSDWNPQQ-----DLQAQDRCHRIGQRNP 703

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V +Y LI  NT+D+ +L+R  +K  ++ ++++
Sbjct: 704 VIIYRLITANTVDQRILERAESKRRLEKMVMH 735


>gi|156405034|ref|XP_001640537.1| predicted protein [Nematostella vectensis]
 gi|156227672|gb|EDO48474.1| predicted protein [Nematostella vectensis]
          Length = 1429

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ------- 90
                  ++       K+  L+ ++ K       +++       +  L++           
Sbjct: 973  FVQMPNRNSVISDSGKLTVLDGLLTKLKLQGHRVLIYSQMTRMIDILEEYMTFRKHKYMR 1032

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  D+        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1033 LDGSSKISDRRDMVADFQNNKDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1087

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++   + R  + G  + V VY L+ +NTI+E +LQR R KS IQ ++++ 
Sbjct: 1088 -VDEQAMDRAHRLGQTKQVTVYRLVTKNTIEERILQRAREKSEIQKMVISG 1137


>gi|324500954|gb|ADY40432.1| Chromatin-remodeling complex ATPase chain isw-1 [Ascaris suum]
          Length = 1053

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 81/233 (34%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFN---------SASKTVKCLQLANGAVYYD----- 43
           +K Y    K QRE Y  +  ++I+  N           +  +   +  N    +D     
Sbjct: 384 VKIYVGLSKMQREWYTKILLKDIDVVNGAGKLEKARIMNILMHLRKCCNHPYLFDGAEPG 443

Query: 44  -----EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                ++          +    +   K   + +++    +  L  L+             
Sbjct: 444 PPYTTDQHLVDNAGKMVLLDKLLKKLKEQGSRVLIFSQMSRMLDLLEDYCWWRNYQYCRL 503

Query: 96  -------KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                      +I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 504 DGQTAHADRQMSIDEFNRPDSEKFIFMLTTRAGGLGINLTA-ADVVIIYDSDWNPQ---- 558

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+  I ++T+DE +++R   K  +  +++   +
Sbjct: 559 -VDLQAMDRAHRIGQKKQVRVFRFITESTVDERIIERAEMKLHLDSIVIQQGR 610


>gi|293358005|ref|XP_230473.5| PREDICTED: yeast INO80-like protein [Rattus norvegicus]
          Length = 1559

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL++++   K+    +++       +  L++       
Sbjct: 1086 NGWSFIRIPGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1145

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1204

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1205 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|269955093|ref|YP_003324882.1| Non-specific serine/threonine protein kinase [Xylanimonas
            cellulosilytica DSM 15894]
 gi|269303774|gb|ACZ29324.1| Non-specific serine/threonine protein kinase [Xylanimonas
            cellulosilytica DSM 15894]
          Length = 1102

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 21/210 (10%)

Query: 2    KQYHK-FQREL---YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            + Y    QRE       L   +              ++A  A    +      +   K+ 
Sbjct: 878  RAYDARLQRERTRVLGMLDDVDGNRLAIFKSLTTLRRMALDASLV-DPSASAGIPSSKLD 936

Query: 58   ALEVIIEKA--NAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNEG 107
             L   + +        +V   F   L+ +         +      +  +    ++ + EG
Sbjct: 937  VLVEQVAEVVAEGHRALVFSQFTGYLSLVAARLDALGLRFAYLDGSTRRRADVVRGFREG 996

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              PL      + G GLNL    + +     WW+        E   V R  + G  R V V
Sbjct: 997  DAPLFLISLKAGGFGLNLTE-ADHVFLLDPWWNPAT-----EAQAVDRTHRIGQTRPVNV 1050

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++A  TI+E V+     K+     +L  
Sbjct: 1051 VRMVAAGTIEEKVMALKERKAAAVGAVLGD 1080


>gi|115727572|ref|XP_788696.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 2
           [Strongylocentrotus purpuratus]
 gi|115939380|ref|XP_001176134.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 1019

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------- 42
           K Y      QRE Y  +  ++I+  N A K          +   +  N    +       
Sbjct: 368 KMYVGMSIMQREWYTKILMKDIDVVNGAGKSDKMRLMNILMHLRKCGNHPYLFDGAEPGP 427

Query: 43  -DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
                     +  K+  L+ ++ K     + +++       L  L+              
Sbjct: 428 PYTTDKHLVENSGKMSVLDKLLPKLKEQGSRVLIFSQMTRLLDILEDYCVWRGHNYCRLD 487

Query: 92  --RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +   +I  +N       +      + G G+NL    +I+V +   W+ +     
Sbjct: 488 GQTPHAERQESINNFNMPDSEKFVFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ----- 541

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G K+ V V+  I++NT++E +++R   K  + ++++   +
Sbjct: 542 VDLQAMDRAHRIGQKKQVHVFRFISENTVEERIVERAEMKLRLDNIVIQQGR 593


>gi|303318869|ref|XP_003069434.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240109120|gb|EER27289.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1688

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1378 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1437

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1438 TVSDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1491

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1492 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1530


>gi|164423223|ref|XP_958688.2| hypothetical protein NCU08919 [Neurospora crassa OR74A]
 gi|157069998|gb|EAA29452.2| hypothetical protein NCU08919 [Neurospora crassa OR74A]
          Length = 1942

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +   N   +++ +     +  +++                    +  
Sbjct: 1641 DSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1700

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1701 TVADFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1754

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1755 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1791


>gi|330797148|ref|XP_003286624.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
 gi|325083372|gb|EGC36826.1| hypothetical protein DICPUDRAFT_54372 [Dictyostelium purpureum]
          Length = 1848

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ 85
               +   L   +  +            K++ L+ +++  K     +++   F   +  L+
Sbjct: 1484 LMGELNHLYGSSSIWMPSFSKSLNDSGKLQVLDKLLKDLKEGGHRVLIYSQFTKMINILE 1543

Query: 86   KAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             +  D+        ++  I        +CG G+NL    + +VF
Sbjct: 1544 DFMIYRKYKYLRLDGSSKLEDRRDMVDDFQSDPSIFAFLLSTRACGIGINLTS-ADTVVF 1602

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       ++   + R  + G +R V VY LI + TI+E +L+R + K  IQ ++
Sbjct: 1603 YDSDWNPT-----VDEQAMDRCHRLGQQRPVTVYRLITKGTIEEKILKRAKQKHHIQSIV 1657

Query: 195  LNALKKE 201
            +   K E
Sbjct: 1658 ITGGKFE 1664


>gi|299755187|ref|XP_001828488.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
 gi|298411108|gb|EAU93321.2| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Coprinopsis cinerea okayama7#130]
          Length = 1471

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 79/227 (34%), Gaps = 35/227 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            + Y + ++        ++ +  +       ++ ++  ++      ++  +          
Sbjct: 835  QLYKQMKKHKMIADGNKDNKGKSGGIKGLSNELMQLRKICQHPFLFESVEDKMNPSGWID 894

Query: 53   ------DEKIKALEVIIEKA--NAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                    K++ L  I+ K       +++ +           F   +         G   
Sbjct: 895  NKLIRASGKVELLSRILPKFFATGHRVLIFFQMTKVMDIMEDFLKFMGWKYLRLDGGTKT 954

Query: 95   DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    +Q +N  + +  +      + G GLNLQ   + ++ F   W+        +   
Sbjct: 955  EERAQFVQLFNSKDSEYMVFILSTRAGGLGLNLQT-ADTVIIFDSDWNP-----HADLQA 1008

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  RAV +   I + +++E + QR R K  I D ++ A +
Sbjct: 1009 QDRAHRIGQTRAVLILRFITEKSVEEAMYQRARYKLDIDDKVIQAGR 1055


>gi|238880670|gb|EEQ44308.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Candida albicans WO-1]
          Length = 1302

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 76/225 (33%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 755 LYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVESVLNSSRLTNDL 814

Query: 53  ----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++   K +   +++ +     +  ++                    +
Sbjct: 815 IWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEE 874

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 875 RQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 928

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 929 RAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 973


>gi|68471523|ref|XP_720068.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
 gi|68471790|ref|XP_719938.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441784|gb|EAL01078.1| hypothetical protein CaO19.239 [Candida albicans SC5314]
 gi|46441919|gb|EAL01212.1| hypothetical protein CaO19.7869 [Candida albicans SC5314]
          Length = 1303

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 76/225 (33%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 755 LYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVESVLNSSRLTNDL 814

Query: 53  ----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++   K +   +++ +     +  ++                    +
Sbjct: 815 IWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEE 874

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 875 RQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 928

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 929 RAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 973


>gi|326671885|ref|XP_003199545.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Danio rerio]
          Length = 1985

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               + +
Sbjct: 965  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGN 1024

Query: 48   WKEVHDEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+      +I  K     +++       L  L+          +         
Sbjct: 1025 LLVKSSGKLTLLQKMLIKLKDGGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGG 1084

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1085 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1138

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1139 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1180


>gi|289615950|emb|CBI57301.1| putative STH1 protein [Sordaria macrospora]
          Length = 1486

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            + Y +    Q+ L  D +G    A   ++  ++  +L N    +DE ++     +     
Sbjct: 794  RLYKQMVTHQKILVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 853

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ ++ K       +++ +   + +  ++                     
Sbjct: 854  LWRTAGKFELLDRVLPKYKATGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 913

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 914  RSELLRLFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 967

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+  +++E +L+R R K  +   ++ A +
Sbjct: 968  RAHRIGQKNEVRILRLISSASVEEKILERARFKLDMDGKVIQAGR 1012


>gi|115744408|ref|XP_793154.2| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like, partial [Strongylocentrotus purpuratus]
 gi|115954708|ref|XP_001193945.1| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like, partial [Strongylocentrotus purpuratus]
          Length = 852

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 32/224 (14%)

Query: 2   KQYHKF--QRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYY-------DEEKHW 48
           K Y     +     +   + +       +  +  ++  +  N    +        E    
Sbjct: 244 KLYKAILTKDHAAFEQNVDMVGMPRTRTSLMNTLMQLRKCVNHPYIFDGVEPEPFELGEH 303

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-------- 98
                 K+  L+ ++         +++       L  LQ          +          
Sbjct: 304 LVDCSGKLHLLDKLLMSLWQQGHKVLLFSQMTRMLDILQDYLGFRGYEYERLDGSVRGEE 363

Query: 99  ---CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                          +      + G GLNL  G + ++F    ++ +      +     R
Sbjct: 364 RYLAVKNFNQRDDTFVFLLSTKAGGQGLNL-VGADTVIFVDSDYNPQN-----DLQAAAR 417

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  R V +  LI +++++EL+LQR   K  + + ++   K
Sbjct: 418 AHRIGQTRPVKIIRLIGRDSVEELILQRADEKLKLTNDVIEGGK 461


>gi|37360298|dbj|BAC98127.1| mKIAA1259 protein [Mus musculus]
          Length = 1196

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 723 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 782

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 783 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 841

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 842 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 891


>gi|255726412|ref|XP_002548132.1| hypothetical protein CTRG_02428 [Candida tropicalis MYA-3404]
 gi|240134056|gb|EER33611.1| hypothetical protein CTRG_02428 [Candida tropicalis MYA-3404]
          Length = 672

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 132 LYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVEAVLNSSRLTNDL 191

Query: 53  ----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ I+   K +   +++ +     +  ++               G   + 
Sbjct: 192 IWRVSGKFELLDRILPKFKKSGHRVLMFFQMTQVMDIMEDFLRWRNMKYLRLDGGTKAED 251

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + +V F   W+  +     +     
Sbjct: 252 RQDMLKVFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQ-----DLQAQD 305

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 306 RAHRIGQKNEVRILRLITNDSVEEMILERAHQKLDIDGKVIQAGK 350


>gi|210075373|ref|XP_501321.2| YALI0C01243p [Yarrowia lipolytica]
 gi|199425214|emb|CAG81616.2| YALI0C01243p [Yarrowia lipolytica]
          Length = 1235

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 80/230 (34%), Gaps = 37/230 (16%)

Query: 1   MKQYHKFQRELYCDLQGENIEA------FNSAS-KTVKCLQLANGAVYYDEEKHWKEVHD 53
           +K Y +  +     +  ++  A          + K ++  ++ N    Y+E +       
Sbjct: 696 LKMYQQMLKYNALYVGDDSGAAGVNKSGVKGLNNKIMQLRKICNHPYVYEEVETLLNPSH 755

Query: 54  E----------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QG 91
                      K + L+ I+ K       +++ +     +  ++                
Sbjct: 756 GNNDLLWRSAGKFELLDRILPKFKARDHRVLMFFQMTQIMDIMEDYLRLRGLQYLRLDGN 815

Query: 92  RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              D     ++ +N    P         + G GLNLQ   + ++ +   W+  +     +
Sbjct: 816 TKADDRSEMLKLFNAPDSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDTDWNPHQ-----D 869

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                R  + G  + V +  LI +++++E++LQR   K  I   ++ A K
Sbjct: 870 LQAQDRAHRIGQTKEVRILRLITEDSVEEVILQRAHAKLEIDGKVIQAGK 919


>gi|164656581|ref|XP_001729418.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
 gi|159103309|gb|EDP42204.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
          Length = 1517

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----- 90
            G            V   K+  L+ ++ +       +++ +     +  +++         
Sbjct: 1186 GPSMQVPRMDKLIVDSSKLARLDTLLRELKAGGHRVLIYFQMTRMIDLMEEYLIHRQYKY 1245

Query: 91   ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +  D+           ++ +      + G G+NL    + ++F+   W+    
Sbjct: 1246 LRLDGASKISDRRDMVTDWQTRPELFVFLLSTRAGGLGINLTA-ADTVIFYDHDWNPSN- 1303

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +   + R  + G  + V VY LI + TIDE +++  R K  +QD+++ 
Sbjct: 1304 ----DSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVKLARNKKEVQDIVVG 1351


>gi|327286054|ref|XP_003227746.1| PREDICTED: hypothetical protein LOC100558176 [Anolis carolinensis]
          Length = 4477

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 70/179 (39%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L++++ +  A    +++       L  L++   
Sbjct: 2854 LHRIVCSMRTQFPDLRLIQYDCGKLQTLDILLRQLKAGAHRVLIFTQMTRMLDVLEQFLN 2913

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2914 YHGHIYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2972

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2973 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 3026


>gi|168212253|ref|ZP_02637878.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170716039|gb|EDT28221.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 1067

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +         K+  ++ I++    +   I++
Sbjct: 861  EKSGRDKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILL 917

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 918  FSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 977

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 978  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1031

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1032 MQEDKRELIQSLMDG 1046


>gi|317138160|ref|XP_001816716.2| ISWI chromatin-remodeling complex ATPase ISW2 [Aspergillus oryzae
           RIB40]
          Length = 1122

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 435 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 494

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 495 VYNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 554

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 555 IAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 608

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 609 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 654


>gi|240274086|gb|EER37604.1| DNA ATP-dependent helicase [Ajellomyces capsulatus H143]
          Length = 1764

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1467 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1526

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1527 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1580

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1581 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1619


>gi|109470653|ref|XP_001080838.1| PREDICTED: yeast INO80-like protein-like [Rattus norvegicus]
          Length = 1559

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL++++   K+    +++       +  L++       
Sbjct: 1086 NGWSFIRIPGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1145

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1204

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1205 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|2645435|gb|AAB87384.1| CHD3 [Drosophila melanogaster]
          Length = 1518

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 70/222 (31%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           K Y     + +  L  +      +  +  +   +  N    +        +         
Sbjct: 523 KFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMS 582

Query: 53  -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L  ++++  A+   +++       L  L+                    
Sbjct: 583 SLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNILEHFLEGEGYQYDRIDGSIKGD 642

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N+      +      + G G+NL    + ++ F   W+        +    
Sbjct: 643 LRQKAIDRFNDPVSEHFVFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDVQAF 696

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G K+ V +Y  +  N+++E ++Q  + K  +  L++
Sbjct: 697 SRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVV 738


>gi|73956748|ref|XP_546747.2| PREDICTED: similar to chromodomain helicase DNA binding protein 5
            [Canis familiaris]
          Length = 1994

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 1003 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1062

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1063 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1122

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1123 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1176

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1177 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1218


>gi|156086846|ref|XP_001610830.1| chromo-helicase DNA-binding protein [Babesia bovis T2Bo]
 gi|154798083|gb|EDO07262.1| chromo-helicase DNA-binding protein, putative [Babesia bovis]
          Length = 1729

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 77/223 (34%), Gaps = 27/223 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKE------VHD 53
            ++ Y       Y  L   +  + +S     ++  ++ N      E    +          
Sbjct: 980  VEWYRNILTRNYDQLAKNSGGSRSSLQNICMELKKVCNHPFLCYEPVDRQSWLQGLVYGS 1039

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
             KI  L+ ++ +       +++       L  + +         +              +
Sbjct: 1040 GKICLLDKLLARLKERGHRVLIFSQMVRMLNIISEYLTMRGFKHQRLDGTMGREVRKKAM 1099

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N+             + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1100 DHFNDPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQN-----DLQAEARAHRI 1153

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V +Y L+ +++I++ +L+R +TK  +  L++  L K+ 
Sbjct: 1154 GQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKKG 1196


>gi|222622221|gb|EEE56353.1| hypothetical protein OsJ_05476 [Oryza sativa Japonica Group]
          Length = 2095

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 1    MKQYHKF-----QRELYCDLQGENIE--------AFNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF     ++E+   ++   ++          +        L+L +  +    E  
Sbjct: 1804 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 1863

Query: 48   WKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLAR--LQKAFPQGRTLDKDPCTI 101
               + D   +        + +  ++  ++       +                +K    +
Sbjct: 1864 PDYLVDLLKEIGMGTGDELHDLHHSPKLVALQEILQECGIGVTYLRLDGSVEPEKRFEIV 1923

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +N +  I +L       G GLNL    + LVF    W+      M +   + R  + G
Sbjct: 1924 KAFNSDPTIDVLLLTTHVGGLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLG 1977

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             ++ V V+ LI + T++E V+   R K ++ + ++NA   
Sbjct: 1978 QRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENA 2017


>gi|193596661|ref|XP_001945595.1| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like
           [Acyrthosiphon pisum]
          Length = 1048

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 87/233 (37%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  + +N    +      
Sbjct: 390 VKVYVGLSKLQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGAEPG 449

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+   + +++  K   + ++V       +  L+             
Sbjct: 450 PPYTTDEHIVFNCGKMVVFDKLLKALKEQDSRVLVFSQMTRMMDILEDYMHWKGYNYCRL 509

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+NE      +      + G G+NL    ++++ +   W+ +    
Sbjct: 510 DGQTPHEDRQRQINEYNEPNSKKFVFILSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 564

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 565 -MDLQAMDRAHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQQGR 616


>gi|168216008|ref|ZP_02641633.1| putative helicase [Clostridium perfringens NCTC 8239]
 gi|182381656|gb|EDT79135.1| putative helicase [Clostridium perfringens NCTC 8239]
          Length = 1065

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  S   K  ++         +         K+  ++ I++    +   I++
Sbjct: 859  EKSGRDKINLFSYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILL 915

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 916  FSQFTSVLQKIEEDFKKEDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 975

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++ 
Sbjct: 976  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVAKDTIEEKIVL 1029

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1030 MQEDKRELIQSLMDG 1044


>gi|70993276|ref|XP_751485.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66849119|gb|EAL89447.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159125581|gb|EDP50698.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1111

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 428 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 487

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 488 VYNSGKMVILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFRDYKYCRIDGTTAHEDR 547

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 548 IAAIDEYNKPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 601

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 602 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 647


>gi|326473788|gb|EGD97797.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
 gi|326485394|gb|EGE09404.1| SNF2 family helicase/ATPase PasG [Trichophyton equinum CBS 127.97]
          Length = 861

 Score =  101 bits (251), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 27/220 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIK 57
            + +R     L  + I +    +  ++   + N  + +                   K+ 
Sbjct: 561 DEIERAKTMKLAKKEISSKKLQNPVMQARLVCNSPLNFYWPWGEDSGVDSTLITSSGKML 620

Query: 58  ALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTIQE 103
            L+ ++    +    +++   F        D A   +++   R        D+       
Sbjct: 621 LLDRLVPCLISKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAF 680

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+    +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 681 NNDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 734

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + TI++ +L+R  +K  ++ L++   K +++
Sbjct: 735 PVIVYRLATRGTIEQTLLERAGSKRRLEKLVIQKGKFKSL 774


>gi|255523219|ref|ZP_05390190.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
 gi|255513087|gb|EET89356.1| Non-specific serine/threonine protein kinase [Clostridium
           carboxidivorans P7]
          Length = 1005

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 22/206 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y+ + + +   ++          S   K  Q+        +E       + K+K    +
Sbjct: 784 IYNSYIKGVREKVKNNYQGKIEVFSYLTKLRQICLDPSIIFDEYK---GGNGKLKVALSL 840

Query: 63  IEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG-KI 109
           +++   +   +++   F S L                        +    + E+N   K+
Sbjct: 841 VKEHITSDGKVLLFSQFTSVLKKIGEALKEDDIEYFYLDGSTKSKERIKLVNEFNSCTKV 900

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V  
Sbjct: 901 KVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNVVEVIK 954

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           L+A+ TI+E ++     K  +   ++
Sbjct: 955 LVARGTIEEKIILLQEHKKELIHNII 980


>gi|170755378|ref|YP_001781299.1| Snf2/Rad54 family helicase [Clostridium botulinum B1 str. Okra]
 gi|169120590|gb|ACA44426.1| helicase, SNF2/RAD54 family [Clostridium botulinum B1 str. Okra]
          Length = 1077

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|148379627|ref|YP_001254168.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 3502]
 gi|153931482|ref|YP_001384006.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153936716|ref|YP_001387549.1| Snf2/Rad54 family helicase [Clostridium botulinum A str. Hall]
 gi|226948994|ref|YP_002804085.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
 gi|148289111|emb|CAL83205.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927526|gb|ABS33026.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. ATCC 19397]
 gi|152932630|gb|ABS38129.1| helicase, SNF2/RAD54 family [Clostridium botulinum A str. Hall]
 gi|226841046|gb|ACO83712.1| helicase, SNF2/RAD54 family [Clostridium botulinum A2 str. Kyoto]
          Length = 1077

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|109475885|ref|XP_001078944.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Rattus
            norvegicus]
          Length = 1951

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 956  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGS 1015

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1016 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1075

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1076 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1129

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1130 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1171


>gi|70953850|ref|XP_746001.1| PfSNF2L [Plasmodium chabaudi chabaudi]
 gi|56526492|emb|CAH76599.1| PfSNF2L, putative [Plasmodium chabaudi chabaudi]
          Length = 879

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 74/215 (34%), Gaps = 26/215 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEK 55
           K Y     +    +           +  ++  +  N    +D  +    +         K
Sbjct: 33  KLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHIETSGK 92

Query: 56  IKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           +  L+ ++   K   + +++       L  +                    D+    I +
Sbjct: 93  MSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRIDGSTVGDERQIRINK 152

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +NE      +      + G G+NL    +I++ F   ++ +     ++   + R  + G 
Sbjct: 153 FNEPNSKYFIFLLSTTAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIGQ 206

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           K+ V VY  +  N+++E +++R   K  +  L++ 
Sbjct: 207 KKRVIVYRFVTHNSVEEKIVERAPKKLKLDSLIIQ 241


>gi|296186183|ref|ZP_06854588.1| SNF2 family [Clostridium carboxidivorans P7]
 gi|296049451|gb|EFG88880.1| SNF2 family [Clostridium carboxidivorans P7]
          Length = 1034

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 22/206 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y+ + + +   ++          S   K  Q+        +E       + K+K    +
Sbjct: 813  IYNSYIKGVREKVKNNYQGKIEVFSYLTKLRQICLDPSIIFDEYK---GGNGKLKVALSL 869

Query: 63   IEKA--NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG-KI 109
            +++   +   +++   F S L                        +    + E+N   K+
Sbjct: 870  VKEHITSDGKVLLFSQFTSVLKKIGEALKEDDIEYFYLDGSTKSKERIKLVNEFNSCTKV 929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G GLNL    N+++ F  WW+       +E     R  + G K  V V  
Sbjct: 930  KVFLISLKAGGTGLNLTS-ANLVIHFDPWWNPA-----VEDQATDRAHRIGQKNVVEVIK 983

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
            L+A+ TI+E ++     K  +   ++
Sbjct: 984  LVARGTIEEKIILLQEHKKELIHNII 1009


>gi|302912567|ref|XP_003050729.1| SWI/SNF family of DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
 gi|256731667|gb|EEU45016.1| SWI/SNF family of DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
          Length = 1117

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 421 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 480

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+               G   +  
Sbjct: 481 VYNAGKMAVLDKLLNRLEKQGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTAHEDR 540

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 541 IAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVILYDSDWNPQA-----DLQAMDR 594

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 595 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 638


>gi|149245518|ref|XP_001527236.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449630|gb|EDK43886.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1400

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 78/227 (34%), Gaps = 38/227 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
             Y +  +     +  E   A +       K ++  ++ N    ++E +    ++ +K+  
Sbjct: 846  LYQQMLKHNALFVGAEVGGAKSGIKGLNNKIMQLRKVCNHPFVFEEVEAV--LNSQKLTN 903

Query: 59   LEVI--------------IEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
              +                 KA+   +++ +     +                       
Sbjct: 904  ELLWRTSGKFELLDRVLPKFKASGHRVLMFFQMTQIMDIMEDFLRLKDMKYMRLDGSTKA 963

Query: 95   DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D+    ++E+N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 964  DERQDMLKEFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 1017

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G K  V +  LI+ ++++E++L+R   K  I   ++ A K
Sbjct: 1018 QDRAHRIGQKNEVRILRLISNDSVEEMILERAHQKLEIDGKVIQAGK 1064


>gi|328724512|ref|XP_001948282.2| PREDICTED: hypothetical protein LOC100164870 [Acyrthosiphon pisum]
          Length = 4192

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 70/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y     + +  L      A   N  +  ++  +        +  +   +         
Sbjct: 1860 KYYRGILEKNFSFLSKGTTSANVPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYRNLNGD 1919

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K   N   +++       L  ++      +   +  
Sbjct: 1920 DPDVYYKALIHSSGKMVLIDKLLPKLKDNGHRVLIFSQMVRCLDIIEDYLVYRKYPFERL 1979

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  + +      +      + G G+NL    + ++ +   W+ +    
Sbjct: 1980 DGRIRGNLRQAAIDRFCKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2035

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V VY L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2036 --DLQAQARCHRIGQQKMVKVYRLLCRNTYEREMFNKASLKLGLDKAILQSMN 2086


>gi|156043545|ref|XP_001588329.1| hypothetical protein SS1G_10776 [Sclerotinia sclerotiorum 1980]
 gi|154695163|gb|EDN94901.1| hypothetical protein SS1G_10776 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1086

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 430 VKWYKKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 489

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   K   + +++    +  L  L+               G   +  
Sbjct: 490 IFNAGKMVMLDKLLTRMKKAGSRVLIFSQMSRLLDILEDYCVFREFKYCRIDGGTAHEDR 549

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 550 IQAIDDYNKPGSEKFVFLLTTRAGGLGINLTS-ADIVVLYDSDWNPQA-----DLQAMDR 603

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  + +N I+E VL+R   K  +  L++   +
Sbjct: 604 AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGR 647


>gi|158296578|ref|XP_316961.4| AGAP008482-PA [Anopheles gambiae str. PEST]
 gi|157014777|gb|EAA12280.5| AGAP008482-PA [Anopheles gambiae str. PEST]
          Length = 4793

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L      A   N  +  ++  +        +  +   +         
Sbjct: 2102 KYYRGILEQNFSFLMKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYRQQHGE 2161

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      V   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2162 DAESYYKNLIVSSGKMVLIDKLLPKLRANGHRVLIFSQMVRCLDILEDYLMYKKYPFERI 2221

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2222 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2277

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2278 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASLKLGLDKAVLQSMN 2328


>gi|58270438|ref|XP_572375.1| transcription activator snf2l1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57228633|gb|AAW45068.1| transcription activator snf2l1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 1096

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYDEEK-------- 46
           + QR+ Y  L  ++I+A N  +             ++  +  N    +D  +        
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                   
Sbjct: 511 QHLVDNAGKMVILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N  +    +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 571 EDRIAAIDEYNAPESEKFVFLLTTRAGGLGINLVT-ADIVVLFDSDWNPQA-----DLQA 624

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 625 MDRAHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|83764570|dbj|BAE54714.1| unnamed protein product [Aspergillus oryzae]
          Length = 1113

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 426 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 485

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 486 VYNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 545

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 546 IAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 600 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 645


>gi|332021363|gb|EGI61737.1| Chromatin-remodeling complex ATPase chain Iswi [Acromyrmex
           echinatior]
          Length = 1007

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 360 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 419

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K       +++       L  L+             
Sbjct: 420 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 479

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 480 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 534

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 535 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 586


>gi|134117902|ref|XP_772332.1| hypothetical protein CNBL2000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254945|gb|EAL17685.1| hypothetical protein CNBL2000 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1096

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYDEEK-------- 46
           + QR+ Y  L  ++I+A N  +             ++  +  N    +D  +        
Sbjct: 451 EMQRKWYKSLLEKDIDAVNGMTGKKEGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 510

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                   
Sbjct: 511 QHLVDNAGKMVILDKLLKSMKAKGSRVLIFSQMSRMLDILEDYCQFRGHQYCRIDGSTAH 570

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N  +    +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 571 EDRIAAIDEYNAPESEKFVFLLTTRAGGLGINLVT-ADIVVLFDSDWNPQA-----DLQA 624

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+V+  I Q+ ++E +L+R   K  +  L++   + +
Sbjct: 625 MDRAHRIGQTKQVYVFRFITQDAVEERILERATQKLKLDQLVIQEGRAQ 673


>gi|190348362|gb|EDK40804.2| hypothetical protein PGUG_04902 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1034

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q   Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 363 EMQIRWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 422

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
                +  K+  L+ ++   +   + +++    +  L  L+                   
Sbjct: 423 EHLAYNSGKMIILDKMLKKFREQGSRVLIFSQMSRLLDILEDYCYLRDYEYCRIDGSTAH 482

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I  +N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 483 EDRIEAIDSYNAPDSDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 536

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V VY  + +N I+E VL+R   K  +  L++   ++
Sbjct: 537 MDRAHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGRQ 584


>gi|149633136|ref|XP_001511990.1| PREDICTED: similar to chromodomain helicase DNA binding protein
           1-like [Ornithorhynchus anatinus]
          Length = 819

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 75/216 (34%), Gaps = 33/216 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHD 53
           MK    F+RE+     G+ ++  N  S+     +       ++                 
Sbjct: 264 MKDLDAFEREM-----GKKVKLQNILSQ---LRKCVGHPYLFEGVEPEPFAIGDHLVEAS 315

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+  L+ ++    A    +++       L  LQ                   ++    I
Sbjct: 316 GKLHLLDKLLAFLYAGGHRVLLFSQMTRMLDVLQDYMDYRGYSYERLDGSVRGEERHLAI 375

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +  + +      + G G+NL    + ++F    ++ +      +     R  + G 
Sbjct: 376 KNFGQQPVFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQATARVHRIGQ 429

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V +  LI ++T++E++ +   +K  + + ++  
Sbjct: 430 SKPVKIIRLIGRDTVEEIIYRTAVSKLRLTNAIMEG 465


>gi|313851062|ref|NP_001186586.1| putative DNA helicase INO80 complex homolog 1 [Gallus gallus]
          Length = 1560

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------- 90
                 +K        K+ AL++++   K+    +++       +  L++           
Sbjct: 1091 FIRIPDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMR 1150

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1151 LDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1205

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1206 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255



 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 12/145 (8%)

Query: 3   QYHKFQRE-LYCDLQGENI--------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH- 52
            Y   + +    DL   ++           +  +  ++  ++ N    ++ ++ W   H 
Sbjct: 775 LYQALKNKISIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHI 834

Query: 53  DEKIKALEVIIEKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
             K   +   I +     +       +   L          ++L       +E     + 
Sbjct: 835 SLKPYPISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDHIQQSLFHRKGINEESCFSFLR 894

Query: 111 LLFAHPASCGHGLNLQYGGNILVFF 135
            +   PA   + +N  +    L  F
Sbjct: 895 FIDVSPAEMANLMNQGHLARWLALF 919


>gi|71033491|ref|XP_766387.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353344|gb|EAN34104.1| hypothetical protein TP01_0866 [Theileria parva]
          Length = 1816

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 27/220 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKE------VHDEKI 56
            Y       Y +L   +  + +S     ++  ++ N      E +  +           KI
Sbjct: 1059 YKNILARNYEELARNSGGSRSSLQNICMELKKVCNHPFLCYEPEDRQVWLQGLIYGSGKI 1118

Query: 57   KALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEW 104
              L+ +++  K     +++       L  + +         +              +  +
Sbjct: 1119 CLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKAMDHF 1178

Query: 105  NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N+ +           + G G+NL    + ++ +   W+ +      +     R  + G  
Sbjct: 1179 NDPQSDDFCFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAEARAHRIGQT 1232

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + V +Y L+ +++I++ +L+R +TK  +  L++  L K  
Sbjct: 1233 KTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRG 1272


>gi|153939497|ref|YP_001391002.1| Snf2/Rad54 family helicase [Clostridium botulinum F str. Langeland]
 gi|152935393|gb|ABS40891.1| helicase, SNF2/RAD54 family [Clostridium botulinum F str. Langeland]
          Length = 1077

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|302684803|ref|XP_003032082.1| hypothetical protein SCHCODRAFT_67837 [Schizophyllum commune H4-8]
 gi|300105775|gb|EFI97179.1| hypothetical protein SCHCODRAFT_67837 [Schizophyllum commune H4-8]
          Length = 811

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 81/222 (36%), Gaps = 37/222 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH--------- 52
            ++Q++   +      + + + S     ++  ++ +    +D     +            
Sbjct: 487 EEWQKQALGECDDFCSKKYRNLSLQNTVMQLRKVCSHPFLFDWPLDPETHAPVIDESLVH 546

Query: 53  -DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------------QGRTLDKD 97
              K+  LE ++++       +++   F   L  ++                Q   L++ 
Sbjct: 547 ASGKMMVLERLLDELFRRKHKVLLFSQFTKMLDIIEDWAIEFKGWNLCRIDGQTPPLERR 606

Query: 98  PCTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +    G  P    L      + G G+NL    + ++F+   W+ +     ++    
Sbjct: 607 AEMDRFQTGGDAPDAPCLFLLSTRAGGLGINLTA-ADTVIFYDQDWNPQ-----MDAQAQ 660

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V ++ L++ +TI+  ++QR   K  ++ L++
Sbjct: 661 DRAHRIGQTRPVLIFRLVSAHTIETKIMQRATEKRKLEALVI 702


>gi|121712712|ref|XP_001273967.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
 gi|119402120|gb|EAW12541.1| RSC complex subunit (Sth1), putative [Aspergillus clavatus NRRL 1]
          Length = 1379

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 786  KLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRATNDL 845

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 846  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGLKYLRLDGSTKSDD 905

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 906  RSDLLKLFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQD 959

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 960  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1004


>gi|297296191|ref|XP_002804786.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Macaca
            mulatta]
          Length = 1478

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1005 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1064

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1065 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1123

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1124 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1173


>gi|312385188|gb|EFR29745.1| hypothetical protein AND_01060 [Anopheles darlingi]
          Length = 5373

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L      A   N  +  ++  +        +  +   +         
Sbjct: 1515 KYYRGILEQNFSFLMKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDYRQQHGE 1574

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      V   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 1575 DAEAYYKNLIVSSGKMVLIDKLLPKLRANGHRVLIFSQMVRCLDILEDYLMYKKYPFERI 1634

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 1635 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 1690

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 1691 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASLKLGLDKAVLQSMN 1741


>gi|307179542|gb|EFN67856.1| ATP-dependent helicase brm [Camponotus floridanus]
          Length = 1996

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1426 LYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEHVGTP 1485

Query: 53   -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K + L+ I+ K       +++       +  ++        +   
Sbjct: 1486 GSNVITGPDLFRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGFMYLR 1545

Query: 96   --------KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1546 LDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1602

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1603 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1651


>gi|322785850|gb|EFZ12469.1| hypothetical protein SINV_09102 [Solenopsis invicta]
          Length = 1963

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1393 LYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEHVGTQ 1452

Query: 53   -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K + L+ I+ K       +++       +  ++        +   
Sbjct: 1453 GSGVITGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGFMYLR 1512

Query: 96   --------KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1513 LDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1569

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1570 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1618


>gi|300123117|emb|CBK24124.2| unnamed protein product [Blastocystis hominis]
          Length = 1117

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 32/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y          L+ E        S   +  +  N           KE HD++    ++
Sbjct: 328 KYYRAIYDRNRAYLEYEGSSMAQLVSIVTELRKCCNHPFMIRGV-VAKETHDDRFLYQKL 386

Query: 62  IIE---------------KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
           +++                     +++   F + L  L+                     
Sbjct: 387 LVQASGKFVLLSKLLPELHQEHHQVLIFSQFITTLDLLEDLLALLEFSFDRLDGSVRGDL 446

Query: 98  -PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I  +N GK+        + G GLNL    + ++ F   W+ +      +     R 
Sbjct: 447 RQQKIDRFNSGKVFAFLLSTKAGGLGLNLTA-ADTVIIFDNDWNPQN-----DVQAEARA 500

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V V+ L+ + T +E +  R   K  +   +  +
Sbjct: 501 HRIGQQKPVQVFRLVTKGTYEEDLFSRASKKLGLSQAVFES 541


>gi|332025170|gb|EGI65350.1| ATP-dependent helicase brm [Acromyrmex echinatior]
          Length = 1953

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1383 LYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEHVGTQ 1442

Query: 53   -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K + L+ I+ K       +++       +  ++        +   
Sbjct: 1443 GSGVITGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGFMYLR 1502

Query: 96   --------KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1503 LDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1559

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1560 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1608


>gi|328699200|ref|XP_001946170.2| PREDICTED: chromatin-remodeling complex ATPase chain Iswi-like
           [Acyrthosiphon pisum]
          Length = 1051

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 87/233 (37%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  + +N    +      
Sbjct: 390 VKVYVGLSKLQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGVEPG 449

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG------- 91
                      +  K+   + +++  K   + ++V       +  L+             
Sbjct: 450 PPYTTDEHIVFNCGKMVVFDKLLKALKEQDSRVLVFSQMTRMMDILEDYMHWKGYNYCRL 509

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+NE      +      S G G+NL    ++++ +   W+ +    
Sbjct: 510 DGQTPHEDRQRQINEYNEPNSKKFVFILSTRSGGLGINL-ATADVVIIYDSDWNPQ---- 564

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 565 -MDLQAMDRAHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQQGR 616


>gi|302824179|ref|XP_002993735.1| hypothetical protein SELMODRAFT_187576 [Selaginella moellendorffii]
 gi|300138459|gb|EFJ05227.1| hypothetical protein SELMODRAFT_187576 [Selaginella moellendorffii]
          Length = 1827

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 81/254 (31%), Gaps = 60/254 (23%)

Query: 1    MKQYHKF-----QRELYCDLQ---------GENIEAFNSASKTVKCLQLANGAVYYDEEK 46
            +K Y KF     ++ +   ++         G      +         ++ +  V   +  
Sbjct: 1504 LKLYEKFAFSQAKKNVATMVEAYGGNADDRGNTSAPTHVFQALQYLRKVCSHPVLVLDGP 1563

Query: 47   HWKEVH-------------DEKIKALEVIIEKAN-------------AAPIIVAYHF--- 77
              + V+               K+ AL  I+E+                  +++       
Sbjct: 1564 LSENVNEENGSMDIHDIQNSPKLLALRDILEECGIGQCNGDNSTAGGQHRVLIFAQLKGF 1623

Query: 78   ----------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
                          +           + K    ++ +N +  I +L       G GLNL 
Sbjct: 1624 LDIIEKDLFQTHMKSVTYMRLDGSVDVSKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT 1683

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +VF    W+        +   + R  + G +R V V+ LI + T++E V+   R 
Sbjct: 1684 A-ADTVVFMEHDWNPMR-----DLQAMDRSHRLGQRRVVNVHRLIMRGTLEEKVMNLQRF 1737

Query: 187  KSTIQDLLLNALKK 200
            K +I + ++NA   
Sbjct: 1738 KLSIANTVINADNA 1751


>gi|328793843|ref|XP_624270.3| PREDICTED: ATP-dependent helicase brm [Apis mellifera]
          Length = 2018

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1448 LYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEHVGTQ 1507

Query: 53   -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                           K + L+ I+ K       +++       +  ++        +   
Sbjct: 1508 GSGVITGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGFMYLR 1567

Query: 96   --------KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1568 LDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1624

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1625 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1673


>gi|320164565|gb|EFW41464.1| SNF2 family helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 2959

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
             A ++A    + +Q   G +   +      + D +    + +I       + V   F + 
Sbjct: 1382 NAMSAAFPDKRLIQYDCGKLQVLDT----LLRDLRAGGHKCLIFTQMTRVLDVLEQFLNF 1437

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               +        T+++    ++ +N + +I        S G G+NL  G + ++F+   W
Sbjct: 1438 HGYVYLRLDGTTTIEQRQVLMERFNRDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDW 1496

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +      + +     R  + G  R V +Y LI++ TI+E +L+R   K  +  +++N 
Sbjct: 1497 NP-----VWDAQAQDRAHRIGQTRDVHIYRLISERTIEENILRRANQKRLLDSMVIND 1549


>gi|225678310|gb|EEH16594.1| helicase SWR1 [Paracoccidioides brasiliensis Pb03]
          Length = 1611

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
               K+  L+ ++ +       V  +F  D    +         D+    +      +I +
Sbjct: 1327 DSGKLAKLDELLRELKNGGHRVLLYFQMD-PHDRSDGGIPHLEDRRDTVLDFQQRPEIFV 1385

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G G+NL    + ++F+   W+       I+   + R  + G  R V VY LI
Sbjct: 1386 FLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRLGQTRQVTVYRLI 1439

Query: 172  AQNTIDELVLQRLRTKSTIQDLLL 195
             + TI+E + +R   K  +Q +++
Sbjct: 1440 TRGTIEERIRKRALQKEEVQRVVI 1463


>gi|328785433|ref|XP_396195.3| PREDICTED: chromatin-remodeling complex ATPase chain Iswi isoform 1
           [Apis mellifera]
          Length = 959

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 361 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 420

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K       +++       L  L+             
Sbjct: 421 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRGFQYCRL 480

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 481 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 535

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 536 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 587


>gi|168019640|ref|XP_001762352.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
 gi|162686430|gb|EDQ72819.1| chromatin remodeling complex SWI/SNF protein [Physcomitrella patens
            subsp. patens]
          Length = 1289

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 80/215 (37%), Gaps = 27/215 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKI 56
            Y +        L     ++    +  ++  +  N    + E + ++  +         K 
Sbjct: 800  YKQIMESGRVGLDIGTGKSRGLLNTAMQLRKCCNHPYLFLEGRDYEPENRDELIRSSGKF 859

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEW 104
            + L+ ++ K       +++       +  L+                   ++    +Q++
Sbjct: 860  ELLDRLLPKLAKTGHRVLLFSQMTRLMDILEDYLEWHGFKFLRLDGTTKTEERGTLLQKF 919

Query: 105  NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N    P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K
Sbjct: 920  NAPDSPYFMFLLSTRAGGLGLNLQT-ADTVILFDSDWNPQ-----MDQQAEDRAHRIGQK 973

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 974  KEVRVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 1008


>gi|328771548|gb|EGF81588.1| hypothetical protein BATDEDRAFT_183 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 1186

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 78/224 (34%), Gaps = 34/224 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           ++ Y + +        G+        +   ++  ++ N    +D+ +             
Sbjct: 650 LRLYEQIRHRR---FGGDGFSKKKVLNNLIMQFRKICNHPFVFDQVEELINPSKGTNDTL 706

Query: 55  -----KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
                K + L+ I+ K   +   I++ +     +  ++                   ++ 
Sbjct: 707 FRVAGKFELLDRILPKFKVSGHRILMFFQMTQVMDIMEDYLRWRGHIYLRLDGHTKPEER 766

Query: 98  PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +N  +    +      + G GLNLQ   + ++ +   W+  +     +     R
Sbjct: 767 TVMLKTFNRPDDPPFIFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQDR 820

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V +  LI   +++E +L R + K  I   ++ A K
Sbjct: 821 AHRIGQKKEVRILRLITSKSVEETILARAQYKLDIDGKVIQAGK 864


>gi|116201585|ref|XP_001226604.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88177195|gb|EAQ84663.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 1125

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 426 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 485

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 486 VYNAGKMIVLDKLLKRMQKQGSRVLIFSQMSRLLDILEDYCVFRQYKYCRIDGSTAHEDR 545

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 546 IAAIDDYNKPDSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 600 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 643


>gi|224044013|ref|XP_002188531.1| PREDICTED: chromodomain helicase DNA binding protein 1-like
           [Taeniopygia guttata]
          Length = 888

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 71/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E        +  ++  +       +        E          
Sbjct: 278 KYYKAILTKDLDAFENETGRKVTLQNVLIQLRKCVAHPYLFSGVEPEPFEIGDHIVEASG 337

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    A    +++       L  LQ                   ++    I+
Sbjct: 338 KMCLLDKLLSFLYAGGHRVLLFSQMTQLLDILQDYMDYRGYSYERLDGSVRGEERHLAIK 397

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +   + R  + G  
Sbjct: 398 NFGQQPIFIFLLSTRAGGVGMNLTA-ADTVIFTDSDFNPQN-----DLQAIARAHRIGQH 451

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 452 KPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 486


>gi|301776989|ref|XP_002923917.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like
            [Ailuropoda melanoleuca]
          Length = 1948

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 957  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1016

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1017 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1076

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1077 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1130

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1131 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1172


>gi|170760693|ref|YP_001787071.1| Snf2/Rad54 family helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407682|gb|ACA56093.1| helicase, SNF2/RAD54 family [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1077

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGNLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V +  LIA+ TI+E + +  + K  I D +++
Sbjct: 1022 TVEIIRLIAKGTIEEKIYKIQQKKKEIIDKVID 1054


>gi|169612371|ref|XP_001799603.1| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
 gi|160702496|gb|EAT83500.2| hypothetical protein SNOG_09308 [Phaeosphaeria nodorum SN15]
          Length = 1333

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 77/219 (35%), Gaps = 35/219 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DE 54
            + ++++  DL  ++ +A +S        +L N    +++ +                  
Sbjct: 774 RRLKKDVEKDLPDKDPKAASS-----SLRKLCNHPFVFEQVEEVMNPTKSTNDLLWRASG 828

Query: 55  KIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQ 102
           K + L+ I+   +     +++ +     +                       D     ++
Sbjct: 829 KFELLDRILPKFEKTGHRVLMFFQMTQIMNIMEDYLRLRGMKYMRLDGATKADDRSELLK 888

Query: 103 EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N    P         + G GLNLQ   + ++ +   W+  +     +     R  + G
Sbjct: 889 EFNAPNSPYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQDRAHRIG 942

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +  LI  N+++E +L+R   K  +   ++ A K
Sbjct: 943 QKNEVRILRLITSNSVEEKILERANYKLDMDGKVIQAGK 981


>gi|291405109|ref|XP_002719030.1| PREDICTED: chromodomain helicase DNA binding protein 3-like
            [Oryctolagus cuniculus]
          Length = 1910

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 989  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1048

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1049 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1108

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1109 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1162

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1163 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1204


>gi|293347835|ref|XP_002726667.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Rattus
            norvegicus]
          Length = 1927

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 932  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGS 991

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 992  SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1051

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1052 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1105

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1106 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1147


>gi|322787688|gb|EFZ13700.1| hypothetical protein SINV_08345 [Solenopsis invicta]
          Length = 1008

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 361 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 420

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K       +++       L  L+             
Sbjct: 421 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 480

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 481 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 535

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 536 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 587


>gi|307191525|gb|EFN75028.1| Chromatin-remodeling complex ATPase chain Iswi [Camponotus
           floridanus]
          Length = 1010

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 362 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 421

Query: 43  --DEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++ K       +++       L  L+             
Sbjct: 422 PPYTTDEHLVYNCGKMVILDKLLPKLQQQESRVLIFSQMTRMLDILEDYCHWRCFQYCRL 481

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 482 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 536

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 537 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 588


>gi|195398201|ref|XP_002057711.1| GJ18280 [Drosophila virilis]
 gi|292630877|sp|B4M9A8|RAD54_DROVI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194141365|gb|EDW57784.1| GJ18280 [Drosophila virilis]
          Length = 786

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 47/236 (19%)

Query: 1   MKQYHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
           ++ Y  F      R    D   +      + +      +L N      E+   +E     
Sbjct: 416 LQLYTNFLKSDQVRRSLADCTDK--TTLTALADITTLKKLCNHPDLIYEKIAAREKGFEN 473

Query: 53  ------------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----- 86
                               K   L+ ++      +   +++  ++   L   ++     
Sbjct: 474 SQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKR 533

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWD 140
                      T+ K    +  +N+          +S   G  L   G N L  F   W+
Sbjct: 534 KYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWN 593

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +   + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 594 PAN-----DEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIID 644


>gi|219120392|ref|XP_002180935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407651|gb|EEC47587.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 970

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 74/222 (33%), Gaps = 30/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY--------DEEKHWKEV 51
           + Y K        + G+          +  ++  +       +        D        
Sbjct: 392 QLYKKLLLRDLDSITGKVSGKNRTAVLNIVMQLRKCCGHPYLFEGVEDRTLDPLGEHLVE 451

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPC 99
           +  K+  ++ ++++     + +++                               D    
Sbjct: 452 NCGKLSMVDKLLKRLKSRGSRVLIFTQMTRVLDILEDFMVMRGYQYCRIDGNTNYDDRES 511

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I E+N              + G G+NLQ   +  + +   W+ ++     +     R  
Sbjct: 512 SIDEFNREGTDKFCFLLSTRAGGLGINLQT-ADTCILYDSDWNPQQ-----DLQAQDRCH 565

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K+ V V+ L+++NT++E +++R + K  +  +++   +
Sbjct: 566 RLGQKKPVNVFRLVSENTVEEKIVERAQQKLKLDAMVVQQGR 607


>gi|161784309|sp|Q872I5|INO80_NEUCR RecName: Full=Putative DNA helicase ino-80
          Length = 1997

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +   N   +++ +     +  +++                    +  
Sbjct: 1696 DSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1755

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1756 TVADFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1809

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1810 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1846


>gi|302822093|ref|XP_002992706.1| hypothetical protein SELMODRAFT_186944 [Selaginella moellendorffii]
 gi|300139447|gb|EFJ06187.1| hypothetical protein SELMODRAFT_186944 [Selaginella moellendorffii]
          Length = 1825

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 81/254 (31%), Gaps = 60/254 (23%)

Query: 1    MKQYHKF-----QRELYCDLQ---------GENIEAFNSASKTVKCLQLANGAVYYDEEK 46
            +K Y KF     ++ +   ++         G      +         ++ +  V   +  
Sbjct: 1502 LKLYEKFAFSQAKKNVATMVEAYGGNADDRGNTSAPTHVFQALQYLRKVCSHPVLVLDGP 1561

Query: 47   HWKEVH-------------DEKIKALEVIIEKAN-------------AAPIIVAYHF--- 77
              + V+               K+ AL  I+E+                  +++       
Sbjct: 1562 LSENVNEENGSMDIHDIQNSPKLLALRDILEECGIGQCNGDNSTAGGQHRVLIFAQLKGF 1621

Query: 78   ----------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
                          +           + K    ++ +N +  I +L       G GLNL 
Sbjct: 1622 LDIIEKDLFQTHMKSVTYMRLDGSVDVSKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLT 1681

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + +VF    W+        +   + R  + G +R V V+ LI + T++E V+   R 
Sbjct: 1682 A-ADTVVFMEHDWNPMR-----DLQAMDRSHRLGQRRVVNVHRLIMRGTLEEKVMNLQRF 1735

Query: 187  KSTIQDLLLNALKK 200
            K +I + ++NA   
Sbjct: 1736 KLSIANTVINADNA 1749


>gi|289616366|emb|CBI56893.1| unnamed protein product [Sordaria macrospora]
          Length = 2008

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +   N   +++ +     +  +++                    +  
Sbjct: 1706 DSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1765

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1766 TVADFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1819

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1820 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1856


>gi|224003427|ref|XP_002291385.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973161|gb|EED91492.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 352

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 31/219 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKE------- 50
           MK+     R    +   +     +S       ++  ++      +D  +   +       
Sbjct: 134 MKEIDSIVRLSEAENNPDAEAGRSSVVLRNLVMQLRKICLHPYLFDFAESDIKSTTLEEL 193

Query: 51  -VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
                K+  L+ ++     N     +   F S L                F  G    + 
Sbjct: 194 IATSGKLAVLDKLLISLFKNGNRTCIFSQFTSMLNILEDYCVLRGWKYVRFDGGTPRAQR 253

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N       +      S G G+NLQ   +  + +   W+ +      +   + R
Sbjct: 254 NHIINQFNAPGSKDFIFLMSTKSGGLGINLQT-ADTCILYDSDWNPQ-----PDLQAMAR 307

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G K+ V VY L++  TI+E V++R   K  +  ++
Sbjct: 308 VHRIGQKKVVHVYRLLSAGTIEERVVERAEKKLYLDKMV 346


>gi|150865273|ref|XP_001384421.2| component of SWI/SNF global transcription activator complex
            [Scheffersomyces stipitis CBS 6054]
 gi|149386529|gb|ABN66392.2| component of SWI/SNF global transcription activator complex
            [Scheffersomyces stipitis CBS 6054]
          Length = 1566

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 36/228 (15%)

Query: 2    KQYHKFQRELYCDLQGEN------IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
            K Y    +         N      +   N+ ++ ++  ++ N    Y+E ++        
Sbjct: 922  KLYQLMLKYNILYASDPNGPSDVPLIIKNANNQIMQLRKICNHPFVYEEVENLINPTIET 981

Query: 53   -------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRT 93
                     K + L+ I+ K       +++ +     +                   G  
Sbjct: 982  SDIIWRVGGKFELLDKILPKFKTTGHRVLIFFQMTQIMDIMEDFLRLRGMKYMRLDGGTK 1041

Query: 94   LDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D     ++ +N              + G GLNLQ   + +V F   W+  +     +  
Sbjct: 1042 ADDRTALLKLFNAPDSDYFCFLLSTRAGGLGLNLQT-ADTVVIFDTDWNPHQ-----DLQ 1095

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 1096 AQDRAHRIGQKNEVRILRLITEDSVEEMILERAHAKLEIDGKVIQAGK 1143


>gi|148544262|ref|YP_001271632.1| helicase domain-containing protein [Lactobacillus reuteri DSM
           20016]
 gi|148531296|gb|ABQ83295.1| helicase domain protein [Lactobacillus reuteri DSM 20016]
          Length = 291

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 3   QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    + L   +Q +             ++  +  +L       D           KIK
Sbjct: 70  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRGYS---GPSGKIK 126

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           A   +I+    +   I++   F S LA                      +     + E+N
Sbjct: 127 ATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVDEFN 186

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P +      + G GLNL    ++++ F  WW++       E     R  + G K  
Sbjct: 187 SYDQPAVFLISLKAGGTGLNLTS-ADVVIHFDPWWNIAA-----ENQATDRAHRIGQKNN 240

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 241 VTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 273


>gi|170034569|ref|XP_001845146.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
 gi|167875927|gb|EDS39310.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
          Length = 5423

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L      A   N  +  ++  +        +  +   +         
Sbjct: 2406 KYYRGILEQNFSFLMKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYRMQHGE 2465

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      V   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2466 DAEAYYKNLVVSSGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLIYRKYPFERI 2525

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2526 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2581

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2582 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASMKLGLDKAILQSMN 2632


>gi|302653548|ref|XP_003018598.1| hypothetical protein TRV_07389 [Trichophyton verrucosum HKI 0517]
 gi|291182255|gb|EFE37953.1| hypothetical protein TRV_07389 [Trichophyton verrucosum HKI 0517]
          Length = 1104

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 422 VKWYQKILEKDIDAVNGAQGNRESKTRLLNVVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 481

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 482 IDNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 541

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 542 IQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 595

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 596 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 641


>gi|294658800|ref|XP_461131.2| DEHA2F17732p [Debaryomyces hansenii CBS767]
 gi|202953393|emb|CAG89514.2| DEHA2F17732p [Debaryomyces hansenii]
          Length = 1295

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 76/225 (33%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 764 LYQQMLKHNALFVGVDVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVETVLNSTRLTNDL 823

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++ K   +   +++ +     +  ++                     
Sbjct: 824 IWRVSGKFELLDRVLPKFKASGHRVLIFFQMTQVMNIMEDFLRWRDMKYLRLDGATKAED 883

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++++N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 884 RQDMLKDFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 937

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 938 RAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 982


>gi|281343214|gb|EFB18798.1| hypothetical protein PANDA_010098 [Ailuropoda melanoleuca]
          Length = 1318

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 311 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 370

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ I+ K       +++       L  L+          +         
Sbjct: 371 ALIKASGKLMLLQKILRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 430

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 431 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 484

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 485 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 526


>gi|158420731|ref|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 isoform 3 [Homo sapiens]
          Length = 2059

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1053 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1112

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1113 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1172

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1173 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1226

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1227 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1268


>gi|327269727|ref|XP_003219644.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7-like [Anolis
            carolinensis]
          Length = 3008

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHD- 53
            K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 1209 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNP 1268

Query: 54   --------------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 1269 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1328

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1329 IDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1385

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1386 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1438


>gi|315054985|ref|XP_003176867.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
           CBS 118893]
 gi|311338713|gb|EFQ97915.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
           CBS 118893]
          Length = 1114

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 431 VKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 490

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 491 IDNSGKMVILDKLLTRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 550

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 551 IQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 604

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|311251314|ref|XP_003124552.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP-like [Sus scrofa]
          Length = 3227

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2017 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2076

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2077 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2135

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2136 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2189


>gi|309268993|ref|XP_003084784.1| PREDICTED: helicase SRCAP [Mus musculus]
 gi|309268995|ref|XP_001480453.2| PREDICTED: helicase SRCAP isoform 1 [Mus musculus]
          Length = 3237

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2021 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2080

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2081 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2139

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2140 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|309266116|ref|XP_003086692.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP [Mus musculus]
          Length = 3231

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2021 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2080

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2081 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2139

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2140 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|301778809|ref|XP_002924810.1| PREDICTED: helicase SRCAP-like [Ailuropoda melanoleuca]
          Length = 3243

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2032 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2091

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2092 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2150

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2151 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2204


>gi|297698573|ref|XP_002826392.1| PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP-like [Pongo abelii]
          Length = 3230

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2021 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2080

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2081 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2139

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2140 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|297283843|ref|XP_002802498.1| PREDICTED: helicase SRCAP-like [Macaca mulatta]
          Length = 3071

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1977 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2036

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2037 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2095

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2096 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2149


>gi|293356219|ref|XP_341933.4| PREDICTED: Snf2-related CBP activator protein [Rattus norvegicus]
          Length = 3198

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1998 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2057

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2058 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2116

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2117 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2170


>gi|293344407|ref|XP_001080260.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5-like [Rattus norvegicus]
          Length = 3212

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2012 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2071

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2072 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2130

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2131 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2184


>gi|291411041|ref|XP_002721806.1| PREDICTED: Snf2-related CBP activator protein [Oryctolagus cuniculus]
          Length = 3217

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2005 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2064

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2065 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2123

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2124 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2177


>gi|281352714|gb|EFB28298.1| hypothetical protein PANDA_014226 [Ailuropoda melanoleuca]
          Length = 3225

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2014 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2073

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2074 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2132

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2133 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2186


>gi|194219024|ref|XP_001501219.2| PREDICTED: similar to Snf2-related CBP activator protein [Equus
            caballus]
          Length = 3228

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2029 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2088

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2089 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2147

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2148 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2201


>gi|166796215|gb|AAI59100.1| SRCAP protein [Homo sapiens]
 gi|168272948|dbj|BAG10313.1| Snf2-related CBP activator protein [synthetic construct]
          Length = 3049

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1840 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1899

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1900 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 1958

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1959 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2012


>gi|149067720|gb|EDM17272.1| rCG39385, isoform CRA_a [Rattus norvegicus]
          Length = 1594

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
             ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 546 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 605

Query: 90  QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 606 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 664

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 665 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 718


>gi|148685599|gb|EDL17546.1| mCG142078, isoform CRA_a [Mus musculus]
          Length = 2617

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1564 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1623

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1624 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 1682

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1683 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 1736


>gi|146219843|ref|NP_006653.2| helicase SRCAP [Homo sapiens]
 gi|296452947|sp|Q6ZRS2|SRCAP_HUMAN RecName: Full=Helicase SRCAP; AltName: Full=Domino homolog 2;
            AltName: Full=Snf2-related CBP activator
 gi|225000510|gb|AAI72428.1| Snf2-related CREBBP activator protein [synthetic construct]
          Length = 3230

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2021 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2080

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2081 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2139

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2140 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|119572598|gb|EAW52213.1| Snf2-related CBP activator protein, isoform CRA_b [Homo sapiens]
          Length = 3168

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1959 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2018

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2019 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2077

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2078 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2131


>gi|119572599|gb|EAW52214.1| Snf2-related CBP activator protein, isoform CRA_c [Homo sapiens]
          Length = 3131

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1922 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1981

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1982 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2040

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2041 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2094


>gi|34535199|dbj|BAC87237.1| unnamed protein product [Homo sapiens]
          Length = 2427

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 2021 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2080

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 2081 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2139

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2140 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2193


>gi|12654665|gb|AAH01171.1|AAH01171 Unknown (protein for IMAGE:3355762) [Homo sapiens]
          Length = 896

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 287 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 346

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 347 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 406

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 407 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 460

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 461 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 495


>gi|162318864|gb|AAI56473.1| Chromodomain helicase DNA binding protein 3 [synthetic construct]
          Length = 2045

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1039 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1098

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1099 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1158

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1159 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1212

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1213 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1254


>gi|73958382|ref|XP_536900.2| PREDICTED: similar to Snf2-related CBP activator protein [Canis
            familiaris]
          Length = 3104

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1898 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1957

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1958 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 2016

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2017 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2070


>gi|5106572|gb|AAD39760.1|AF143946_1 transcriptional activator SRCAP [Homo sapiens]
          Length = 2971

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1762 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1821

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1822 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 1880

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1881 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 1934


>gi|34327954|dbj|BAA20768.2| KIAA0309 [Homo sapiens]
          Length = 3053

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++ +  A    +++       L  L++   
Sbjct: 1844 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 1903

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + +VF+   
Sbjct: 1904 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVVFYDSD 1962

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1963 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2016


>gi|114556131|ref|XP_513146.2| PREDICTED: RAD54-like protein [Pan troglodytes]
          Length = 901

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   + +S T    +L N      ++   +E         
Sbjct: 576 ELYKRFLRQAKPAEELLEGKMSVSSLSSITS-LKKLCNHPALIHDKCVEEEDGFVGALDL 634

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP------ 89
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 635 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 694

Query: 90  ----QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 695 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 753

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 754 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 802


>gi|291001481|ref|XP_002683307.1| chromodomain helicase DNA binding protein [Naegleria gruberi]
 gi|284096936|gb|EFC50563.1| chromodomain helicase DNA binding protein [Naegleria gruberi]
          Length = 1800

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 37/227 (16%)

Query: 2   KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------YDE 44
           K Y +      RE       ++       +  ++  ++ N                   E
Sbjct: 608 KAYEQAIFKRNREFLMKGVSKSQNVPKLNNVLMELRKVCNHPFLISGAEENITRGMSDVE 667

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK----- 96
                     K+  ++ ++ K       +++       L  L+     +  T  +     
Sbjct: 668 VNEALIKSSSKMILVDKLLRKLREGGHKVLIFSQMVLVLNILEDYMRYRNFTYVRLDGTI 727

Query: 97  ----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +N+  I   +      + G G+NL    + ++ +   W+ +      + 
Sbjct: 728 KGSIRQQAIDRFNDPNIDTFVFLVSTKAGGVGINLTS-ADTVIIYDSDWNPQN-----DL 781

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G  + V +Y L+ +NT ++ + +R   K  +   +L++
Sbjct: 782 QAQARCHRIGQTKEVKIYRLLTKNTKEKEIFERASMKLGLDRAVLSS 828


>gi|115389802|ref|XP_001212406.1| chromatin remodelling complex ATPase chain ISW1 [Aspergillus
           terreus NIH2624]
 gi|114194802|gb|EAU36502.1| chromatin remodelling complex ATPase chain ISW1 [Aspergillus
           terreus NIH2624]
          Length = 1119

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 432 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 491

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 492 VYNAGKMVILDKLLSRMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 551

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N       +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 552 IAAIDDYNRPGSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 605

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 606 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 651


>gi|124487025|ref|NP_001074845.1| chromodomain helicase DNA binding protein 5 isoform1 [Mus musculus]
          Length = 1952

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 960  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1019

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1020 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1079

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1080 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1133

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1134 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1175


>gi|237716743|ref|ZP_04547224.1| Snf2 family helicase [Bacteroides sp. D1]
 gi|262405519|ref|ZP_06082069.1| Snf2 family helicase [Bacteroides sp. 2_1_22]
 gi|294646342|ref|ZP_06723989.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806677|ref|ZP_06765508.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229442726|gb|EEO48517.1| Snf2 family helicase [Bacteroides sp. D1]
 gi|262356394|gb|EEZ05484.1| Snf2 family helicase [Bacteroides sp. 2_1_22]
 gi|292638297|gb|EFF56668.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446097|gb|EFG14733.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 946

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTNRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFRERGWKYALLTGATNNRPSEIAHFTEQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|84998372|ref|XP_953907.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1 )
            [Theileria annulata]
 gi|65304905|emb|CAI73230.1| SNF2-family protein (chromodomain-helicase-DNA-binding protein 1
            homologue), putative [Theileria annulata]
          Length = 1816

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 80/223 (35%), Gaps = 27/223 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKE------VHD 53
            ++ Y       Y +L   +  + +S     ++  ++ N      E +  +          
Sbjct: 1055 IEWYKNILARNYEELARNSGGSRSSLQNICMELKKVCNHPFLCYEPEDRQVWLQGLIYGS 1114

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
             KI  L+ +++  K     +++       L  + +         +              +
Sbjct: 1115 GKICLLDKLLQRLKEKGHRVLIFSQMVRMLNIISEYLTLRGFKHQRLDGTMGKEVRKKAM 1174

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N+ +           + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1175 DHFNDPQSDDFCFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAEARAHRI 1228

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V +Y L+ +++I++ +L+R +TK  +  L++  L K  
Sbjct: 1229 GQTKTVQIYRLVTKDSIEQTILERAKTKMVLDALVVQGLNKRG 1271


>gi|241952923|ref|XP_002419183.1| ATP-dependent helicase, putative; chromatin structure-remodeling
           complex protein, putative; nuclear protein Sth1/Nps1
           homologue, putative [Candida dubliniensis CD36]
 gi|223642523|emb|CAX42772.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1300

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  +   A +       K ++  ++ N    ++E +            
Sbjct: 750 LYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVESVLNSSRLTNDL 809

Query: 53  ----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ ++   K +   +++ +     +  ++                   D+
Sbjct: 810 IWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWRDMKYLRLDGSTKADE 869

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 870 RQDMLKVFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQD 923

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 924 RAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 968


>gi|66826589|ref|XP_646649.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60474939|gb|EAL72876.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3247

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 78/220 (35%), Gaps = 30/220 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-SASKTVK-----CLQLANGAVYYDEEKHWKEVHDEK 55
            K Y   + +    L        N   +K +K       ++ N    + ++++  + +  +
Sbjct: 1964 KMYDLIKTKGVSKLASSGGADGNPKLAKGLKNTYVQLRKICNHPYLFYDDEYNIDDNLIR 2023

Query: 56   IKALEVIIE------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
                  +++      KA    +++       +  L+  F                D+   
Sbjct: 2024 YAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGH 2083

Query: 100  TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ +N       +      + G GLNLQ   + ++ F   W+ +     ++     R  
Sbjct: 2084 LLELFNAPNSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRAH 2137

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+ V V  L+  ++++E +L R   K  +   ++ A
Sbjct: 2138 RIGQKQTVRVLRLVTAHSVEESILARANFKKELDKKIIQA 2177


>gi|219121827|ref|XP_002181260.1| imitation switch isoform 1, alias nucleosome remodeling factor 140
           kDa subunit [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407246|gb|EEC47183.1| imitation switch isoform 1, alias nucleosome remodeling factor 140
           kDa subunit [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1023

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 76/232 (32%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSA---------SKTVKCLQLANGAVYY------- 42
           K Y    K Q+E Y     ++    N           +  ++  ++ N    +       
Sbjct: 386 KLYIGLTKMQQEWYVRCLQKDAHELNKLGGPDRNRLLNVLMQLRKVCNHPYLFDGAEQGP 445

Query: 43  -DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFP 89
              +      +  K++ +  ++ K     + +++       L                  
Sbjct: 446 PYIDGPHLWENSGKMQLMHKLLPKLQAKGSRVLIFCQMTRVLDILEDYFRLTKLEYCRID 505

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                ++    + E+N              + G G+NL    +I++ +   W+ +     
Sbjct: 506 GNTDGERRDSQMDEFNAEGSSKFAFLLSTRAGGLGINL-ATADIVILYDSDWNPQ----- 559

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G  + V V+  + + T++E +++R   K  +   ++   +
Sbjct: 560 VDLQAMDRAHRIGQTKPVQVFRFVTEGTVEEKIIERADRKLFLDAAVIQQGR 611


>gi|3298562|gb|AAC39923.1| zinc-finger helicase [Homo sapiens]
          Length = 2000

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|308160430|gb|EFO62921.1| Chromodomain helicase-DNA-binding protein, putative [Giardia lamblia
            P15]
          Length = 2647

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------KEVHDEKIKALE 60
               + Y  L  ++  +    +  ++  ++ N      + K              K + L+
Sbjct: 1538 LLEQNYEMLTAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTASLRDIVDGSGKFQVLD 1597

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             +++K N     +++       L  L++                T ++    I  +NE  
Sbjct: 1598 KLLDKLNSEGHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKN 1657

Query: 109  IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      S G G+NL    + ++ F   ++        +     R  + G  + V 
Sbjct: 1658 SKDFIFLLSTRSGGQGINL-ATADTVIIFDADYNP-----HNDLQAAGRVHRIGQSKPVT 1711

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +Y L+ +++++E +L     K  +   ++   K E+ ++
Sbjct: 1712 IYRLVTRDSVEERILDIGHRKLMLDYAIIQK-KNESTNL 1749


>gi|261197291|ref|XP_002625048.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595678|gb|EEQ78259.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1129

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 436 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 495

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 496 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 555

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 556 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 609

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 610 AHRIGQTKQVIVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 655


>gi|194375514|dbj|BAG56702.1| unnamed protein product [Homo sapiens]
          Length = 616

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 7   KYYKAILTKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 66

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 67  KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 126

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 127 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 180

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 181 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 215


>gi|168180326|ref|ZP_02614990.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
 gi|182668683|gb|EDT80661.1| helicase, SNF2/RAD54 family [Clostridium botulinum NCTC 2916]
          Length = 1077

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 27/213 (12%)

Query: 2    KQY----HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y       ++E Y +++            S   +  Q+      + E     E  + K
Sbjct: 851  KVYASFAESAKKEFYKEIRERGFNKSKIKILSIITRLRQICCDPSTFIENY---EGSNGK 907

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQE 103
             + L  I+         I++   F S L                       D     +++
Sbjct: 908  TETLLDIVNSSINAGHKILLFSQFTSVLKNIAEVFKANNINYLYLDGSTKADVRGSLVKD 967

Query: 104  WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            +N GK  +      + G GLNL    +I++ F  WW+       +E     R  + G K+
Sbjct: 968  FNNGKGDIFLISLKAGGTGLNLTS-ADIVIHFDPWWNPA-----VEDQASDRAHRIGQKK 1021

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V V  LIA+ TI+E + +  + K  I D ++ 
Sbjct: 1022 TVEVIRLIAKGTIEEKIYKIQQKKKEIIDKVIE 1054


>gi|62234443|ref|NP_080850.2| putative DNA helicase INO80 complex homolog 1 [Mus musculus]
 gi|114149323|sp|Q6ZPV2|INO80_MOUSE RecName: Full=Putative DNA helicase INO80 complex homolog 1
 gi|123232376|emb|CAM22022.1| INO80 homolog (S. cerevisiae) [Mus musculus]
 gi|123236330|emb|CAM25341.1| INO80 homolog (S. cerevisiae) [Mus musculus]
          Length = 1559

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1086 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1145

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1204

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1205 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|46137507|ref|XP_390445.1| hypothetical protein FG10269.1 [Gibberella zeae PH-1]
          Length = 1114

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 31/220 (14%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 421 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 480

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  +   + +++    +  L  L+               G   +  
Sbjct: 481 VYNAGKMAVLDKLLKRLQKQGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTAHEDR 540

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 541 IAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 594

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V VY  + +N I+E VL+R   K  +  L++
Sbjct: 595 AHRIGQTKQVVVYRFVTENAIEEKVLERAAQKLRLDQLVI 634


>gi|327289025|ref|XP_003229225.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Anolis
            carolinensis]
          Length = 2037

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 968  KYYKLILTRNFEALNSKGGGSQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1027

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1028 SLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1087

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + +V +   W+        +    
Sbjct: 1088 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HNDIQAF 1141

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1142 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1183


>gi|195031155|ref|XP_001988299.1| GH10642 [Drosophila grimshawi]
 gi|292630863|sp|B4JCS7|RAD54_DROGR RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193904299|gb|EDW03166.1| GH10642 [Drosophila grimshawi]
          Length = 786

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 47/236 (19%)

Query: 1   MKQYHKFQR-----ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
           ++ Y  F +         D   +   +  + S      +L N      E+   +E     
Sbjct: 416 LQIYTNFLKSDQVCRSLADCNEK--TSLTALSDITTLKKLCNHPDLIYEKLAAREKGFEN 473

Query: 53  ------------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----- 86
                               K   L+ ++      +   +++  ++   L   ++     
Sbjct: 474 SQNVLPANYKPKDINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKR 533

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWD 140
                      T+ K    +  +N+          +S   G  L   G N L  F   W+
Sbjct: 534 KYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWN 593

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +   + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 594 PAN-----DEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 644


>gi|145608774|ref|XP_369873.2| hypothetical protein MGG_06388 [Magnaporthe oryzae 70-15]
 gi|145016204|gb|EDK00694.1| hypothetical protein MGG_06388 [Magnaporthe oryzae 70-15]
          Length = 1435

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 83/225 (36%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
            + Y++  +    +  D +G    A   ++  ++  +L N    +DE ++     +     
Sbjct: 805  RLYNQMVKHQKLVVSDGKGGKTGARGLSNMIMQLRKLCNHPFVFDEVENQMNPTNTSNDL 864

Query: 54   -----EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                  K + L+ ++ K   +   +++ +   + +  ++                     
Sbjct: 865  LWRTAGKFELLDRVLPKYKASGHRVLMFFQMTAIMDIMEDFLRFRGIQYLRLDGTTKSED 924

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + ++N    P         + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 925  RSDLLYQFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 978

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ ++++E +L R R K  +   ++ A +
Sbjct: 979  RAHRIGQKNEVRILRLISSSSVEEKILDRARFKLDMDGKIIQAGR 1023


>gi|281346162|gb|EFB21746.1| hypothetical protein PANDA_013140 [Ailuropoda melanoleuca]
          Length = 1814

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 825  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 884

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 885  SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 944

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 945  LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 998

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 999  SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1040


>gi|238503530|ref|XP_002382998.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus flavus
            NRRL3357]
 gi|220690469|gb|EED46818.1| SNF2 family helicase/ATPase (Ino80), putative [Aspergillus flavus
            NRRL3357]
          Length = 1553

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1327 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1386

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1387 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1440

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1441 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1479


>gi|24308089|ref|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Homo sapiens]
 gi|51701343|sp|Q8TDI0|CHD5_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 5;
            Short=CHD-5; AltName: Full=ATP-dependent helicase CHD5
 gi|19773960|gb|AAL98962.1|AF425231_1 chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56203111|emb|CAI19450.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56417878|emb|CAI19891.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|119591922|gb|EAW71516.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|148922387|gb|AAI46382.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
 gi|151555557|gb|AAI48804.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
 gi|261857536|dbj|BAI45290.1| Chromodomain-helicase-DNA-binding protein 5 [synthetic construct]
          Length = 1954

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 958  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1017

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1018 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1077

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1078 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1131

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1132 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1173


>gi|169343905|ref|ZP_02864901.1| putative helicase [Clostridium perfringens C str. JGS1495]
 gi|169298025|gb|EDS80116.1| putative helicase [Clostridium perfringens C str. JGS1495]
          Length = 1065

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 68/190 (35%), Gaps = 22/190 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
            +  N  +   K  ++         +         K+  ++ I++    +   I++   F 
Sbjct: 864  DKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILLFSQFT 920

Query: 79   SDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
            S L                   G +       ++ +N +  I +      + G GLNL  
Sbjct: 921  SVLKKIEEDFKKEDISYLYLDGGTSAKDRVERVKRFNEDSNIKVFLISLKAGGVGLNLTS 980

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              ++++ F  WW+       +E     R  + G +  V V  L+A++TI+E ++     K
Sbjct: 981  -ASVVIHFDPWWNPA-----VEEQATDRAHRFGQENKVEVIKLVAKDTIEEKIVLMQEDK 1034

Query: 188  STIQDLLLNA 197
              +   L++ 
Sbjct: 1035 RELIQSLMDG 1044


>gi|149240541|ref|XP_001526146.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450269|gb|EDK44525.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 1088

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q E Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 406 DMQLEWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 465

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   +   + +++    +  L  L+                 + 
Sbjct: 466 EHLIDNSGKMIILDKMLKKFQKEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 525

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 526 EDRIEAIDEYNAPDSAKFVFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 579

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G K+ V VY  + +N I+E VL+R   K  +  L++   +
Sbjct: 580 MDRAHRIGQKKQVKVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGR 626


>gi|146413953|ref|XP_001482947.1| hypothetical protein PGUG_04902 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1034

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 79/228 (34%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q   Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 363 EMQIRWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 422

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTL 94
                +  K+  L+ ++   +   + +++    +  L  L+                   
Sbjct: 423 EHLAYNSGKMIILDKMLKKFREQGSRVLIFSQMSRLLDILEDYCYLRDYEYCRIDGSTAH 482

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I  +N   +   +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 483 EDRIEAIDLYNAPDLDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 536

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V VY  + +N I+E VL+R   K  +  L++   ++
Sbjct: 537 MDRAHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQQGRQ 584


>gi|324499809|gb|ADY39928.1| Chromodomain-helicase-DNA-binding protein 3 [Ascaris suum]
          Length = 1844

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L         +  +  +   +  N    + +       H        
Sbjct: 880  KYYKNILTRNFEALNPKGGGTQVSLLNIIMDLKKCCNHPYLFPKASIEAPKHKNGMYEGT 939

Query: 53   -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K   L+ ++ K       +++       L  L+          +         
Sbjct: 940  ALIKASGKFILLQKMLRKLKEQGHRVLIFSQMTKMLDVLEDFCENEGYKYERIDGSITGQ 999

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1000 ARQDAIDRFNAPNAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1053

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G +  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1054 SRAHRIGQQNKVLIYRFVTRNSVEERITSVAKKKMLLTHLVVRA 1097


>gi|256074706|ref|XP_002573664.1| helicase [Schistosoma mansoni]
 gi|238658849|emb|CAZ29896.1| helicase swr1, putative [Schistosoma mansoni]
          Length = 1156

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 18/179 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL---- 81
            +  K  Q       Y            KI+ L   + K  +    I++   F   L    
Sbjct: 894  QIHKLCQFYETLSSYTLSPESIISGSGKIQWLNDNLPKLVSEGHRILIFSQFVIMLDILE 953

Query: 82   ------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                   R          + +    I  +N   I +      + G G+NL  G + ++  
Sbjct: 954  EFLRITNRRYIRMDGSTPVSERQTLIDRFNSSSIEVFLLSTRAGGLGINLT-GADTVIIH 1012

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + ++        +R    R  + G K  V V  LI++ T++E +L+    K  ++  +
Sbjct: 1013 DIDFNP-----YNDRQAEDRCHRLGQKNPVHVIRLISEGTLEEGMLRIASEKLQMEQNV 1066


>gi|194386148|dbj|BAG59638.1| unnamed protein product [Homo sapiens]
          Length = 693

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 84  KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 143

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 144 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 203

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 204 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 257

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 258 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|302883714|ref|XP_003040756.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
 gi|256721646|gb|EEU35043.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
          Length = 805

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 511 LKAINILKKLCNHPDLLNLSDDLPGSEGCCPEDFVPKESRGRDREVKSWYSGKMAVLDRM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++ S L   ++                 ++K    +  +N+   
Sbjct: 571 LARIRQDTNDKIVLISNYTSTLDLFERLCRSRQYGCLRLDGTMNVNKRQKLVDRFNDPNG 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 DEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 685 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 716


>gi|242000110|ref|XP_002434698.1| chromodomain helicase DNA binding protein, putative [Ixodes
            scapularis]
 gi|215498028|gb|EEC07522.1| chromodomain helicase DNA binding protein, putative [Ixodes
            scapularis]
          Length = 1882

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYY---------DEEKHWKEV 51
            K Y       Y  L  +    + +  +  +   +  N    +              ++  
Sbjct: 966  KYYKYILTRNYEALNAKGGSHSVSLLNIMMDLKKCCNHPYLFPAASQEAPRMPNGAYEGS 1025

Query: 52   HDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARL----------QKAFPQGRTLD 95
               K     +++ K           +++       L  +           +    G T  
Sbjct: 1026 ALTKACGKLILLHKMLRTLKETGHRVLIFSQMTKMLDIMEDFLEAEGYKYERIDGGITGS 1085

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N    P         + G G+NL    + ++ +   W+        +    
Sbjct: 1086 QRQEAIDRFNAPNAPQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1139

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1140 SRAHRIGQANKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1181


>gi|52630326|ref|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Homo sapiens]
 gi|88911273|sp|Q12873|CHD3_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 3;
            Short=CHD-3; AltName: Full=ATP-dependent helicase CHD3;
            AltName: Full=Mi-2 autoantigen 240 kDa protein; AltName:
            Full=Mi2-alpha; AltName: Full=Zinc finger helicase;
            Short=hZFH
 gi|119610521|gb|EAW90115.1| chromodomain helicase DNA binding protein 3, isoform CRA_b [Homo
            sapiens]
          Length = 2000

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|255010206|ref|ZP_05282332.1| SNF family helicase [Bacteroides fragilis 3_1_12]
          Length = 1013

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 20/207 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y   +  L   L  + +E         +  ++  QLA            +      I 
Sbjct: 796 ELYQHEKNSLRNILLEQTVEKGQQPLIVLNGILRLRQLACHPQMILPGFIGESGKLNLII 855

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
                + ++    +++   F   L          +   A   G + ++     +   + +
Sbjct: 856 ETFETL-RSEGHKVLIFSSFVKHLELVADEFRKRQWDYALLTGSSTNRPEEIARFSRDPR 914

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I        + G GLNL    + +     WW+     Q      + R  + G  + V  Y
Sbjct: 915 IQAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAAEAQA-----IARAHRIGQDKQVIAY 968

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I Q +I+E ++Q    K  + +  +
Sbjct: 969 RFITQGSIEEKIIQLQEEKRKLAETFI 995


>gi|7022541|dbj|BAA91637.1| unnamed protein product [Homo sapiens]
          Length = 831

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|227496410|ref|ZP_03926698.1| helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834062|gb|EEH66445.1| helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1213

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 41/231 (17%)

Query: 2    KQYHKF---QRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYD------------- 43
            + Y      +R+    L  ++     F++        Q+A                    
Sbjct: 945  RAYEARLIRERQKVMGLLEDDTAQARFSALRSLTILRQMALDPALVPAAEEGAQDDADPA 1004

Query: 44   -------EEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ--------K 86
                    +   +     K++ L   +          +V   F   L+ ++        +
Sbjct: 1005 AGHERAVRQGGRRPRPSAKVEMLRDTLVPIVAEGHRALVFSQFTRYLSSVREELEAAGLR 1064

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                          + ++ +G+  +      + G GL L    + +     WW+ +  +Q
Sbjct: 1065 TLYLDGGTSDRQRVVAQFRDGEADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQ 1123

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++R       + G  + V VY ++A +TI++ V+     K+ +   ++  
Sbjct: 1124 AVDR-----AHRIGQDKPVMVYRMVAADTIEDKVMALKEKKAGLFAKVVEG 1169


>gi|239606662|gb|EEQ83649.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           dermatitidis ER-3]
 gi|327351568|gb|EGE80425.1| ISWI chromatin-remodeling complex ATPase ISW1 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1132

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 439 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 498

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 499 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 558

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 559 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 612

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 613 AHRIGQTKQVIVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 658


>gi|222637088|gb|EEE67220.1| hypothetical protein OsJ_24338 [Oryza sativa Japonica Group]
          Length = 2258

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 78/227 (34%), Gaps = 33/227 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+     +  +  ++  ++ N          E    + +H+ +
Sbjct: 924  EYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIPGTEPESGSPEFLHEMR 983

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + I   +   +++       L  L+                   ++ 
Sbjct: 984  IKASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVA 1043

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 1044 ERQAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1097

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G    + VY L+ + +++E +L   + K  +  L +N  + +
Sbjct: 1098 RAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKSESQ 1144


>gi|218199663|gb|EEC82090.1| hypothetical protein OsI_26092 [Oryza sativa Indica Group]
          Length = 2275

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 78/227 (34%), Gaps = 33/227 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
            + Y     + Y  L+  G+     +  +  ++  ++ N          E    + +H+ +
Sbjct: 941  EYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIPGTEPESGSPEFLHEMR 1000

Query: 56   --------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
                    +    + I   +   +++       L  L+                   ++ 
Sbjct: 1001 IKASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVA 1060

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 1061 ERQAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 1114

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G    + VY L+ + +++E +L   + K  +  L +N  + +
Sbjct: 1115 RAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKSESQ 1161


>gi|239609929|gb|EEQ86916.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1686

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1384 DSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1443

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1444 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1497

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1498 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|325095531|gb|EGC48841.1| DNA ATP-dependent helicase [Ajellomyces capsulatus H88]
          Length = 1676

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1379 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1438

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1439 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1492

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1493 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1531


>gi|327308272|ref|XP_003238827.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326459083|gb|EGD84536.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1113

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 431 VKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 490

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 491 IDNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 550

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 551 IQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 604

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|289618531|emb|CBI55255.1| unnamed protein product [Sordaria macrospora]
          Length = 1872

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWK------- 49
            K +  F +     +  E          +         +L N      +  H +       
Sbjct: 1543 KLFEDFTKREAAKITEEAGRDDKEAKAHIFQALQYMRKLCNSPALVMKPGHKQYDDTQKF 1602

Query: 50   ----------EVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLA 82
                       VH  K+ AL  ++                         ++       L 
Sbjct: 1603 LAKRNTSLEDPVHAPKLTALRDLLVDCGIGVEGQESSDPLYTPIKPHRALIFCQMKEMLD 1662

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +Q                       +    + ++N +    +L    +  G GLNL  G
Sbjct: 1663 MVQNTVLKKMLPSVSHLRLDGSVDPTRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-G 1721

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K 
Sbjct: 1722 ADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKI 1776

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1777 DVASTVVN 1784


>gi|325187562|emb|CCA22100.1| Putative SWI/SNF related putative [Albugo laibachii Nc14]
          Length = 1114

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDE----- 44
           K Y    + QRE Y  +   +    N+          +  ++  ++ N    ++      
Sbjct: 419 KLYVGLSEMQREWYMRVLHRDAAHLNAIGGSDRVRLLNILMQLRKVCNHPYLFEGAEPGP 478

Query: 45  ---EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
              E      +  K+  L  ++ K  A  +  ++     S +  L+              
Sbjct: 479 PYLEGPHLWENCGKLTLLHRLLPKLKAQGSRALIFCQMTSMMDILEDYMRYFNHEYCRLD 538

Query: 96  ------KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    ++E+N              + G G+NL    +I++ +   W+ +     
Sbjct: 539 GQTKGEERDIMMEEFNSPGSTTFCFLLSTRAGGLGINL-ATADIVILYDSDWNPQ----- 592

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G  + V V+  I+  T++E +++R   K  +   ++   +
Sbjct: 593 VDLQAMDRAHRIGQTKTVRVFRFISDGTVEEKIVERAERKLYLDAAIIQQGR 644


>gi|310792871|gb|EFQ28332.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1119

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 422 VKWYQKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 481

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+               G   +  
Sbjct: 482 VYNAGKMVVLDKLLARMQKQGSRVLIFSQMSRLLDILEDYCVFREYKYCRIDGGTAHEDR 541

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 542 IAAIDEYNKPGSEKFIFLLTTRAGGLGINLTS-ADIVVLYDSDWNPQA-----DLQAMDR 595

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 596 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 639


>gi|251770931|gb|EES51516.1| putative helicase, Snf2 family [Leptospirillum ferrodiazotrophum]
          Length = 1068

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 21/179 (11%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
            A        E   K  H  K       I +       I++   F   L   ++       
Sbjct: 874  ACHPGLLPPELRGKRGHSSKFILTLDKIAEGVEEGHKILLFSQFTGMLDLFEEALPSRGI 933

Query: 87   ---AFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      + +    +  +         +  +   + G GL L    + +  +  WW+
Sbjct: 934  STVRLDGSTPISERQKRVALFQSDAPDSPRVFLSSLKAGGVGLTLTK-ADYVFHYDPWWN 992

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +     +E     R  + G  R+VF+Y  + + T++E V    + K  I   LL   +
Sbjct: 993  PQ-----VEAQASDRSHRIGQTRSVFIYRFLVRGTVEERVQDLKKVKRDIFSRLLGGEE 1046


>gi|73946651|ref|XP_533537.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 1 [Canis familiaris]
          Length = 1542

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 28/217 (12%)

Query: 3    QYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYYDE----EKHWKEVHDE 54
             Y   Q +      G      + A    +  ++  ++ N    +        +       
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIEVNCSNTLYRASG 1020

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
            K + L+ I+ K  A    +++     S +  ++  F                +     ++
Sbjct: 1021 KFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLK 1080

Query: 103  EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++NE      +      + G GLNLQ   + +V F   W+  +     +     R  + G
Sbjct: 1081 KFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQDRAHRIG 1134

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1171


>gi|119571321|gb|EAW50936.1| chromodomain helicase DNA binding protein 1-like, isoform CRA_a
           [Homo sapiens]
          Length = 897

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|330801436|ref|XP_003288733.1| hypothetical protein DICPUDRAFT_153008 [Dictyostelium purpureum]
 gi|325081209|gb|EGC34733.1| hypothetical protein DICPUDRAFT_153008 [Dictyostelium purpureum]
          Length = 1544

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 30/222 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------D 53
            K Y +F      D++       N+        +++N       + H ++           
Sbjct: 981  KLYLEFLDSN--DIKSVLEGRRNALYGIDILKKISNHPDILHMDPHDEDRPEDYGNINRS 1038

Query: 54   EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------DPCT 100
             K++ ++ I+         +++       L  ++       T +                
Sbjct: 1039 AKLRVVDQILPLWYKQGDKVLLFCQTRQMLDIVEAYIRNSTTFNYLRMDGTTSVKHRQSL 1098

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++E+N + K+ +        G GLNL  G N ++ F   W+        +     R  + 
Sbjct: 1099 VEEFNLDEKLFIFLLTTKVGGLGLNLT-GANRVILFDPDWNPST-----DTQARERVYRI 1152

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K++V +Y L+   TI+E +  R   K  + + +L   +++
Sbjct: 1153 GQKKSVTIYRLVTLGTIEEKIYHRQIYKQFLTNKILKDPRQK 1194


>gi|50418184|gb|AAH77717.1| CHD1L protein [Homo sapiens]
          Length = 693

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 84  KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 143

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 144 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 203

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 204 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 257

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 258 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|28629217|gb|AAO49505.1| ALC1 [Homo sapiens]
          Length = 897

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|296228587|ref|XP_002759879.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Callithrix jacchus]
          Length = 862

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 252 KYYKAILMKDLDAFENETGKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 311

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 312 KLHLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 371

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 372 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 425

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 426 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 460


>gi|148612870|ref|NP_004275.3| chromodomain-helicase-DNA-binding protein 1-like [Homo sapiens]
 gi|311033359|sp|Q86WJ1|CHD1L_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like;
           AltName: Full=Amplified in liver cancer protein 1
 gi|55663194|emb|CAH72650.1| chromodomain helicase DNA binding protein 1-like [Homo sapiens]
          Length = 897

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|28175792|gb|AAH43501.1| Similar to RIKEN cDNA 4432404A22 gene [Homo sapiens]
          Length = 890

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 281 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 340

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 341 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 400

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 401 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 454

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 455 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 489


>gi|301613323|ref|XP_002936158.1| PREDICTED: chromodomain-helicase-DNA-binding protein 7, partial
            [Xenopus (Silurana) tropicalis]
          Length = 2908

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 74/238 (31%), Gaps = 44/238 (18%)

Query: 2    KQYHKFQRELYCDL----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-----EVH 52
            K Y     + +  L     G +    N  +  ++  +  N     +  +        E H
Sbjct: 1142 KYYRAILEKNFAFLSKGGGGGHANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFRETH 1201

Query: 53   D---------------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD 95
            +                K+  ++ ++ K       +++       L  L+    Q R   
Sbjct: 1202 NCDPSDFQLQAMTQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPY 1261

Query: 96   KD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +              I  +++      +      + G G+NL    +  + F   W+ + 
Sbjct: 1262 ERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN 1320

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1321 -----DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1373


>gi|258572078|ref|XP_002544816.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
 gi|237905086|gb|EEP79487.1| SNF2-family ATP dependent chromatin remodeling factor snf21
            [Uncinocarpus reesii 1704]
          Length = 1435

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 78/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 813  KLYKQLMTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEEEMNPGKGTNDL 872

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ ++ K   +   +++ +     +  ++                   D 
Sbjct: 873  IWRTAGKFELLDRVLPKFKASGHRVLMFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 932

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 933  RSELLRLFNAPGSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 986

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 987  RAHRIGQKNEVRILRLISSNSVEERILERAQFKLDMDGKVIQAGK 1031


>gi|225678325|gb|EEH16609.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb03]
          Length = 1391

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSAS-KTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y +        +             S   ++  +L N    ++  +            
Sbjct: 750 KLYKQLVTHNKLVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFESVEDEMNPGRATNDL 809

Query: 55  ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                 K + L+ I+ K   +   +++ +     +  ++                   D 
Sbjct: 810 IWRTAGKFELLDRILPKFKASGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 869

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 870 RSDLLKEFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 923

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 924 RAHRIGQKNEVRILRLITSNSVEERILERAQFKLDMDGKVIQAGK 968


>gi|159465629|ref|XP_001691025.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158279711|gb|EDP05471.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1061

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  ++++A N         +  ++  +  N    +                
Sbjct: 415 EMQKKWYAALLQKDVDALNGGADRAKLLNVVMQLRKCCNHPYLFQGAEPGPPFITGEHLV 474

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLAR---------LQKAFPQGRTLDK-DP 98
            +  K+  L+ ++ +       +++       +                  G T  +   
Sbjct: 475 ENSGKLVLLDKLLPRLKERESRVLIFSQMTRMIDILEDYCLYRGYGYCRIDGNTDGEARD 534

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N       +      + G G+NL    +I+V +   W+ +     ++   + R 
Sbjct: 535 NMIDEFNRPNSSKFIFLLSTRAGGLGINL-ATADIVVLYDSDWNPQ-----MDLQAMDRA 588

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N+I+E V+++   K  +  L++   +
Sbjct: 589 HRIGQKKEVQVFRFCIENSIEEKVIEKAYKKLRLDALVIQQGR 631


>gi|302307807|ref|NP_984563.2| AEL297Wp [Ashbya gossypii ATCC 10895]
 gi|299789178|gb|AAS52387.2| AEL297Wp [Ashbya gossypii ATCC 10895]
          Length = 895

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 53/247 (21%)

Query: 3   QYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
            Y  F R      L                  +L N                        
Sbjct: 575 IYEHFVRSREVAKLMKGTGSQP--LKAIGLLKKLCNHPDLLDLPDEIAGSTNLIPDDYQS 632

Query: 43  ---------DEEKHWKEVHDEKIKALEVIIEKANA---APIIVAYHFNSDLARLQKAFPQ 90
                          +  H  K   LE  + K        I++  ++   L  ++K    
Sbjct: 633 AMTHNSRGGRSHVEVQTTHSSKFAILERFLFKIKHESNDKIVLISNYTQTLDLIEKMCRY 692

Query: 91  GR----------TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                       T++K    + ++N+      +      + G G+NL  G N L+     
Sbjct: 693 NHYGVLRLDGTMTINKRQKLVDKFNDPSGEEFIFLLSSKAGGCGINL-IGANRLILMDPD 751

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+    Q       + R  + G K+  F+Y  I   +I+E + QR   K ++   +++  
Sbjct: 752 WNPAADQ-----QALARVWRDGQKKDCFIYRFITTGSIEEKIYQRQSMKMSLSSCVVDE- 805

Query: 199 KKETIHV 205
           K++   +
Sbjct: 806 KEDVERL 812


>gi|253742393|gb|EES99228.1| Chromodomain helicase-DNA-binding protein, putative [Giardia
            intestinalis ATCC 50581]
          Length = 2636

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 73/210 (34%), Gaps = 26/210 (12%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------KEVHDEKIKALE 60
               + Y  L  ++  +    +  ++  ++ N      + K              K + L+
Sbjct: 1527 LLEQNYEMLTAKSYNSVKLQNLLMQLRKVCNHPYIIHDLKLHTASLKDMVDGSGKFQVLD 1586

Query: 61   VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
             +++K N     +++       L  L++                T ++    I  +NE  
Sbjct: 1587 KLLDKLNSEGHRVLIFSQLIKTLDILERYCFYKKYKFQRLQGSMTSEQRRRAINNFNEKN 1646

Query: 109  IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      S G G+NL    + ++ F   ++ +      +     R  + G  + V 
Sbjct: 1647 SKDFIFLLSTRSGGQGINL-ATADTVIIFDADYNPQN-----DLQAAGRVHRIGQSKPVT 1700

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +Y L+ +++++E +L     K  +   ++ 
Sbjct: 1701 IYRLVTRDSVEERILDIGHRKLMLDYAIIQ 1730


>gi|261198791|ref|XP_002625797.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594949|gb|EEQ77530.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1686

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1384 DSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1443

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1444 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1497

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1498 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|171677949|ref|XP_001903925.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937043|emb|CAP61702.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1057

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y +      +      G+        +  ++  +  N    +               
Sbjct: 394 VKWYKRILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 453

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +A  + +++    +  L  L+               G   +  
Sbjct: 454 VFNSGKMIILDKLLKRMQAQDSRVLIFSQMSRLLDILEDYCVFRGYKYCRIDGGTAHEDR 513

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 514 IAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVILYDSDWNPQA-----DLQAMDR 567

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 568 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 611


>gi|50546160|ref|XP_500607.1| YALI0B07513p [Yarrowia lipolytica]
 gi|49646473|emb|CAG82840.1| YALI0B07513p [Yarrowia lipolytica]
          Length = 807

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 48/239 (20%)

Query: 3   QYHKFQ--RELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            Y +F+  +E    L+GE       + +      +L N           +          
Sbjct: 487 LYVQFRTSKEARSLLKGEKSSEGTTTLNAIGILKKLCNHPDLLKLPDEIEGCRKVFPDDY 546

Query: 52  ----------------HDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ-- 90
                              K   LE ++   N      I++  ++ + L  ++K   Q  
Sbjct: 547 APPDERGSRDRDIYPHFSAKFLILERMLRSINAETNDKIVIISNYTATLDLIEKMCRQRR 606

Query: 91  --------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      ++K    + ++N+ +    +      + G GLNL  G N L+     W+
Sbjct: 607 YGCLRLDGTMNINKRAKLVTQFNDPEGQEFIFLLSSKAGGCGLNL-IGANRLILMDPDWN 665

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               Q       + R  + G K+  FVY LIA  TI+E + QR   K ++   +++ ++
Sbjct: 666 PAADQ-----QALARVWRDGQKKDCFVYRLIATGTIEEKIFQRQSMKQSLSTCVVDEVQ 719


>gi|261335950|emb|CBH09283.1| putative DNA excision repair protein ERCC-6 [Heliconius melpomene]
          Length = 944

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE-----------VHDEKIKALEVII--EKANAAPI 71
                    ++ N    Y  E H  +               K+  +  ++          
Sbjct: 461 VLVALTTLRKICNHPDLYLYEAHDDDEDIDEESFGNWKRSGKMSVVHSLLKIWLKQGHRT 520

Query: 72  IVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++     + L  L++   + +             +    I+ +N   K  +  A     G
Sbjct: 521 LIFSQSRAMLCILEQHLQKHKFEYLKMDGSVSVAQRQNLIKTFNENAKYLVFLATTRVGG 580

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL  G + ++ +   W+        +     R  + G +R V VY L++  TI+E +
Sbjct: 581 LGVNLT-GADRVIIYDPDWNPAT-----DNQAKERAWRIGQQRNVTVYRLLSAGTIEEKI 634

Query: 181 LQRLRTKSTIQDLLL 195
            QR   K+ + + +L
Sbjct: 635 YQRQIFKNFLSNKIL 649


>gi|227364978|ref|ZP_03849019.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|325681709|ref|ZP_08161229.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
 gi|227069989|gb|EEI08371.1| helicase domain protein [Lactobacillus reuteri MM2-3]
 gi|324979021|gb|EGC15968.1| SNF2/helicase domain protein [Lactobacillus reuteri MM4-1A]
          Length = 292

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 27/213 (12%)

Query: 3   QYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    + L   +Q +             ++  +  +L       D           KIK
Sbjct: 71  LYQARAQRLIRQIQKQNDEEFQQNKLAVLAEITRLRELCCSPQLLDRGYS---GPSGKIK 127

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           A   +I+    +   I++   F S LA                      +     + E+N
Sbjct: 128 ATMNLIKDEMADNHKILLFSQFTSALAILKEKLANAGIKYFVIEGKTKKEDRLQFVDEFN 187

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               P +      + G GLNL    ++++ F  WW++       E     R  + G K  
Sbjct: 188 SYDQPAVFLISLKAGGTGLNLTS-ADVVIHFDPWWNIAA-----ENQATDRAHRIGQKNN 241

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +Y +IAQNTI+E +++  + K+ + + +L+ 
Sbjct: 242 VTIYKMIAQNTIEEKIVEMQQKKAALANSILSG 274


>gi|327350853|gb|EGE79710.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1686

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1384 DSGKLAKLDELLHELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1443

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1444 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1497

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1498 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1536


>gi|254569936|ref|XP_002492078.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|238031875|emb|CAY69798.1| ATPase component of the RSC chromatin remodeling complex [Pichia
           pastoris GS115]
 gi|328351432|emb|CCA37831.1| ATP-dependent helicase STH1/SNF2 [Pichia pastoris CBS 7435]
          Length = 1239

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 40/229 (17%)

Query: 3   QYHKFQRELYCDLQ--------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-- 52
            Y +  +     +            I+  N  +K ++  ++ N    +DE ++  +    
Sbjct: 719 LYQQMLKHNALFIGASSGPGVSKSGIKGLN--NKIMQLRKICNHPFVFDEVENVVDPTRS 776

Query: 53  --------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                     K + L+ ++ K       +++ +     +  ++                 
Sbjct: 777 TADLIWRTSAKFELLDRVLPKFCATGHRVLIFFQMTQVMDIMEDYLRYREMKYLRLDGST 836

Query: 96  ---KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   ++ +N              + G GLNLQ   + ++ F   W+  +     + 
Sbjct: 837 NADDRQDMLKAFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DL 890

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 891 QAQDRAHRIGQKNEVRILRLITTDSVEEVILERAHQKLDIDGKVIQAGK 939


>gi|73946641|ref|XP_860308.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 19 [Canis familiaris]
          Length = 1550

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G   +    A    +  ++  ++ N    +   +  KE        
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEVMKENPACSNEA 1022

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K  A    +++     S +  ++  F                + 
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++NE      +      + G GLNLQ   + +V F   W+  +     +     
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|256072791|ref|XP_002572717.1| helicase [Schistosoma mansoni]
 gi|238657881|emb|CAZ28949.1| helicase, putative [Schistosoma mansoni]
          Length = 1753

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 19/182 (10%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            K  QL         +    +    K++ L  ++ +  +    +++       L  L++  
Sbjct: 1323 KLHQLVMSCRIQFPDPRLIQYDCGKLQRLHSLLRELKSGNHRVLIFTQMARMLDILEQFL 1382

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I +      S G G+NL  G + ++F+  
Sbjct: 1383 AYHGHRYLRLDGTTKVEQRQVLMERFNQDSQIFVFILSTRSGGLGINLT-GADTVIFYDS 1441

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 1442 DWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILRKANQKRFLSDVAIEG 1496

Query: 198  LK 199
             K
Sbjct: 1497 GK 1498


>gi|114553052|ref|XP_525165.2| PREDICTED: chromodomain helicase DNA binding protein 5 [Pan
            troglodytes]
          Length = 1991

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 958  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1017

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L   +          +         
Sbjct: 1018 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLGEDFLEYEGYKYERIDGGITGG 1077

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1078 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1131

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1132 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1173


>gi|328768836|gb|EGF78881.1| hypothetical protein BATDEDRAFT_12619 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 680

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 35/223 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------------EKHWK 49
            Y  F ++    L  +               +L N  +  +               K  +
Sbjct: 362 IYRHFSKQEMNKLAAKER-GEKPEKAITTLKKLVNHPILLNRDDMEDSWIPKEFSFKECQ 420

Query: 50  EVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
             +  K+  LE ++ + +   +  I++  ++   L                     T+ K
Sbjct: 421 PEYSGKMYLLERMLCQMHAQSSDKIVLISNYTQTLDAIEKMCRVRKWQLCRLDGTMTIQK 480

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+   P  +      + G G+NL  G N L+     W+        +   + 
Sbjct: 481 RQKLVDRFNDPTQPEFIFLLSSKAGGCGINL-IGANRLILTDPDWNPAN-----DAQALA 534

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G  +  F+Y  IA  TI+E + QR   K ++   +++ 
Sbjct: 535 RVWRDGQTKVCFIYRFIATGTIEEKIFQRQAHKQSLSSCVVDE 577


>gi|317025573|ref|XP_001389339.2| ISWI chromatin-remodeling complex ATPase ISW2 [Aspergillus niger
           CBS 513.88]
          Length = 1121

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 437 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 496

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 497 VYNAGKMTILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 556

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 557 IAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQAMDR 610

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 611 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|313148000|ref|ZP_07810193.1| Snf2 family helicase [Bacteroides fragilis 3_1_12]
 gi|313136767|gb|EFR54127.1| Snf2 family helicase [Bacteroides fragilis 3_1_12]
          Length = 960

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 20/207 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y   +  L   L  + +E         +  ++  QLA            +      I 
Sbjct: 743 ELYQHEKNSLRNILLEQTVEKGQQPLIVLNGILRLRQLACHPQMILPGFIGESGKLNLII 802

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
                + ++    +++   F   L          +   A   G + ++     +   + +
Sbjct: 803 ETFETL-RSEGHKVLIFSSFVKHLELVADEFRKRQWDYALLTGSSTNRPEEIARFSRDPR 861

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I        + G GLNL    + +     WW+     Q      + R  + G  + V  Y
Sbjct: 862 IQAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAAEAQA-----IARAHRIGQDKQVIAY 915

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I Q +I+E ++Q    K  + +  +
Sbjct: 916 RFITQGSIEEKIIQLQEEKRKLAETFI 942


>gi|295086172|emb|CBK67695.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacteroides
           xylanisolvens XB1A]
          Length = 946

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTNRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVKHLEVLAEAFRERGWKYALLTGATNNRPSEIAHFTEQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|240272910|gb|EER36435.1| lymphocyte-specific helicase [Ajellomyces capsulatus H143]
 gi|325095672|gb|EGC48982.1| lymphocyte-specific helicase [Ajellomyces capsulatus H88]
          Length = 983

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIK 57
           + ++     L    I +    +  ++     N    +         H          K+ 
Sbjct: 680 RIEKAKTAQLAKREIASKKLQNPVMQARLACNSPHNFYWPWGDDPSHIDDTLITSSGKML 739

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            L+ +I    +    I++   F + L                      +       IQ +
Sbjct: 740 LLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNCCRIDGAVSQVDRQAQIQAF 799

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 800 NTDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 853

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 854 PVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGKFKSL 893


>gi|194208118|ref|XP_001492263.2| PREDICTED: chromodomain helicase DNA binding protein 5 [Equus
            caballus]
          Length = 1936

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 940  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 999

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1000 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1059

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1060 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1113

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1114 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1155


>gi|73999128|ref|XP_857674.1| PREDICTED: similar to chromodomain helicase DNA binding protein 7
           isoform 3 [Canis familiaris]
          Length = 2191

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
           K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 411 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 470

Query: 55  ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 471 DSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 530

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 531 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 588 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 640


>gi|320587640|gb|EFX00115.1| tbp associated factor [Grosmannia clavigera kw1407]
          Length = 1928

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 13/200 (6%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDE-KIKA 58
            + Y + QR    + QG +IE  N A K      L    G     +      ++   K   
Sbjct: 1645 RMYDETQR--LLERQGSSIEDPNHAPKLTALRDLLVDCGIGVEGDGDGSDPLYQPIKPHR 1702

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWN-EGKIPLLFAHP 116
              +  +      ++      S L  +      G    ++    +  +N +    +L    
Sbjct: 1703 ALIFCQMKEMLDMVQNTVLKSMLPSVSYLRLDGSVEANRRQDIVNRFNKDPSYDVLLLTT 1762

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
               G GLNL  G + ++F    W+ +      +   + R  + G K+ V VY LI + T+
Sbjct: 1763 NVGGLGLNLT-GADTVIFVEHDWNPQR-----DLQAMDRAHRIGQKKVVNVYRLITRGTL 1816

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E +L   R K  +   ++N
Sbjct: 1817 EEKILSLQRFKIDVASTVVN 1836


>gi|302658601|ref|XP_003021002.1| hypothetical protein TRV_04867 [Trichophyton verrucosum HKI 0517]
 gi|291184877|gb|EFE40384.1| hypothetical protein TRV_04867 [Trichophyton verrucosum HKI 0517]
          Length = 1522

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1235 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1294

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1295 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1348

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1349 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1387


>gi|270007595|gb|EFA04043.1| hypothetical protein TcasGA2_TC014275 [Tribolium castaneum]
          Length = 4075

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      A   N  +  ++  +        +  +   +         
Sbjct: 1833 KYYRAILERNFSFLSKGTTHANIPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYKMAQGE 1892

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 1893 DPDAYYKALINSSGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLMFRKYPFERI 1952

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  ++       +      + G G+NL    + ++ +   W+ +    
Sbjct: 1953 DGRIRGNLRQAAIDRFSRPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2008

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2009 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2059


>gi|237720473|ref|ZP_04550954.1| Snf2 family helicase [Bacteroides sp. 2_2_4]
 gi|229450224|gb|EEO56015.1| Snf2 family helicase [Bacteroides sp. 2_2_4]
          Length = 946

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTDRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++        ++  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFHERGWKYALLTGSTNNRPSEIAHFTDQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|255071819|ref|XP_002499584.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226514846|gb|ACO60842.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1271

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 75/216 (34%), Gaps = 31/216 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEK 55
           Y +  +    + +G+     N+A   ++  ++ N    +  +  + +            K
Sbjct: 766 YRQVVKGTVTNTEGKVRVLQNTA---MQLRKVCNHPYLFLSDDLFYQPSGPEEILRASGK 822

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQE 103
            + L+ I+ K   +   +++       L  +       +                  + +
Sbjct: 823 FEILDRILPKLKRSGHRVLLFSQMVKCLDIIGDYLDWRKYTYLRLDGSTGTDARADLLDK 882

Query: 104 WNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N    P         + G GLNLQ   + ++ F   W+ +     ++     R  + G 
Sbjct: 883 FNAPDSPYFLFMLSTRAGGMGLNLQT-ADTVIIFDSDWNPQ-----MDAQAEDRAHRIGQ 936

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           KR V +  ++   TI+E +L++   K  I    + A
Sbjct: 937 KRRVKILTMVCDGTIEEDILRKANEKRAIDHKAIQA 972


>gi|52630322|ref|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 isoform 2 [Homo sapiens]
 gi|119610520|gb|EAW90114.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
            sapiens]
 gi|119610522|gb|EAW90116.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
            sapiens]
          Length = 1966

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|327300603|ref|XP_003234994.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326462346|gb|EGD87799.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1691

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1404 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1463

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1464 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1517

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1518 LGQTRQVTVYRLITRRTIEERIRKRALQKEEVQRVVISG 1556


>gi|221330583|ref|NP_001137761.1| kismet, isoform C [Drosophila melanogaster]
 gi|220901895|gb|ACL82968.1| kismet, isoform C [Drosophila melanogaster]
          Length = 5517

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2277 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2336

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2337 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2396

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2397 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2452

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2453 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2506


>gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
 gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura]
          Length = 5605

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2386 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2445

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2446 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2505

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2506 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2561

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2562 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2615


>gi|195470194|ref|XP_002087393.1| GE16349 [Drosophila yakuba]
 gi|194173494|gb|EDW87105.1| GE16349 [Drosophila yakuba]
          Length = 5330

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2278 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2337

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2338 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2397

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2398 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2453

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2454 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2507


>gi|195436658|ref|XP_002066274.1| GK18181 [Drosophila willistoni]
 gi|194162359|gb|EDW77260.1| GK18181 [Drosophila willistoni]
          Length = 5689

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2452 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2511

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2512 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2571

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2572 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2627

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2628 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2681


>gi|194853302|ref|XP_001968138.1| GG24671 [Drosophila erecta]
 gi|190660005|gb|EDV57197.1| GG24671 [Drosophila erecta]
          Length = 5335

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2285 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2344

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2345 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2404

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2405 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2460

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2461 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2514


>gi|194766405|ref|XP_001965315.1| GF24504 [Drosophila ananassae]
 gi|190617925|gb|EDV33449.1| GF24504 [Drosophila ananassae]
          Length = 3217

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2269 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKAQHGE 2328

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2329 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2388

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2389 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2444

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2445 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2498


>gi|17986031|ref|NP_523441.1| kismet, isoform A [Drosophila melanogaster]
 gi|7230509|gb|AAF43004.1|AF215703_1 KISMET-L long isoform [Drosophila melanogaster]
 gi|22945599|gb|AAF51527.3| kismet, isoform A [Drosophila melanogaster]
          Length = 5322

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 41/236 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2277 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2336

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2337 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2396

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2397 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2452

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++  + 
Sbjct: 2453 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG 2506


>gi|323454254|gb|EGB10124.1| hypothetical protein AURANDRAFT_1751 [Aureococcus anophagefferens]
          Length = 421

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 27/177 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
              +  + AN  +          + + K + L  ++ K       +++   +   L  L 
Sbjct: 258 LFTELRKAANHPLLLR-------LDNAKCERLRELLPKLKKEGHKVLLFSQWVRLLDLLG 310

Query: 86  KAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILV 133
                             + +    + ++N+  G + +      + G G+NL  G + ++
Sbjct: 311 LLCDDLDLNWSRLDGSTPITERQQLVADFNDPAGDLDVFLLSTRAGGLGINLT-GADTVI 369

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + ++ E     I+R    R  + G  + V VY L+A++T+D  ++     K  +
Sbjct: 370 IHDVDFNPE-----IDRQAEDRAHRIGQTKPVTVYRLVAEDTVDRDIIDLANRKRAV 421


>gi|62898724|dbj|BAD97216.1| chromodomain helicase DNA binding protein 1-like variant [Homo
           sapiens]
          Length = 702

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 192 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 251

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 252 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 311

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ ++     +     R  + G  
Sbjct: 312 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQD-----DLQAAARAHRIGQN 365

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 366 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 400


>gi|85090821|ref|XP_958601.1| hypothetical protein NCU07556 [Neurospora crassa OR74A]
 gi|28919976|gb|EAA29365.1| hypothetical protein NCU07556 [Neurospora crassa OR74A]
          Length = 1893

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 59/248 (23%)

Query: 2    KQYHKF-QRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------- 49
            K +  F +RE     +     +     +         +L N      +  H +       
Sbjct: 1564 KLFEDFTKREAKKITEEAGRDDKEAKAHIFQALQYMRKLCNSPALVMKPGHKQYDDTQKF 1623

Query: 50   ----------EVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLA 82
                       VH  K+ AL  ++                         ++       L 
Sbjct: 1624 LAKRNTSLEDPVHAPKLTALRDLLVDCGIGVEGQESSDPLYTPIKPHRALIFCQMKEMLD 1683

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +Q                       +    + ++N +    +L    +  G GLNL  G
Sbjct: 1684 MVQNTVLKTMLPSVSHLRLDGSVDPTRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-G 1742

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K 
Sbjct: 1743 ADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKI 1797

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1798 DVASTVVN 1805


>gi|326920472|ref|XP_003206496.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like
            [Meleagris gallopavo]
          Length = 1545

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------- 90
                 +K        K+ AL++++   K+    +++       +  L++           
Sbjct: 1090 FIRIPDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMR 1149

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1150 LDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1204

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1205 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1254


>gi|298480485|ref|ZP_06998682.1| Snf2 family protein [Bacteroides sp. D22]
 gi|298273306|gb|EFI14870.1| Snf2 family protein [Bacteroides sp. D22]
          Length = 946

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTNRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++         +  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVKHLEVLAEAFRERGWKYALLTGATNNRPSEIAHFTEQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|189458814|ref|NP_083492.2| chromodomain helicase DNA binding protein 5 isoform 2 [Mus musculus]
          Length = 1915

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 960  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1019

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1020 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1079

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1080 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1133

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1134 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1175


>gi|123248483|emb|CAM23902.1| chromodomain helicase DNA binding protein 5 [Mus musculus]
          Length = 1946

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 960  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1019

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1020 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1079

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1080 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1133

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1134 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1175


>gi|255931991|ref|XP_002557552.1| Pc12g07170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582171|emb|CAP80344.1| Pc12g07170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1665

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1377 DSGKLAKLDQLLRELKPGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1436

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +  +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1437 TVSDFQSNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1490

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1491 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVI 1527


>gi|109113157|ref|XP_001111066.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform 2
            [Macaca mulatta]
          Length = 1981

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 976  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1035

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1036 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1095

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1096 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1149

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1150 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1191


>gi|195485258|ref|XP_002091017.1| GE12485 [Drosophila yakuba]
 gi|194177118|gb|EDW90729.1| GE12485 [Drosophila yakuba]
          Length = 1027

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|195380475|ref|XP_002048996.1| GJ21345 [Drosophila virilis]
 gi|194143793|gb|EDW60189.1| GJ21345 [Drosophila virilis]
          Length = 714

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVK---------CLQLANGAVYY--------DEEKHW 48
           K QRE Y  L  ++I+  N A K  K           +  N    +              
Sbjct: 375 KLQREWYTKLLLKDIDVVNGAGKIEKMRLQNILVHLRKCTNHPYLFDGAEPGPPYTTDEH 434

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDK 96
                 K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 435 LVNDSGKMIILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCAWRNYNYCRLDGKTEHED 494

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N  K    +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 495 RNQMIQEYNMEKSTKFIFLLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ L+ +NT+DE +++R   K  +  +++ A +
Sbjct: 549 RAHRIGQKKQVRVFRLVTENTVDEKIVERAEVKLRLDRMVIQAGR 593


>gi|14042443|dbj|BAB55248.1| unnamed protein product [Homo sapiens]
          Length = 521

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 175 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 234

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L   Q                   ++    I+
Sbjct: 235 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDIPQDYMDYRGYSYERVDGSVRGEERHLAIK 294

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 295 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 348

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 349 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 383


>gi|316969354|gb|EFV53467.1| DNA repair protein Rhp54 [Trichinella spiralis]
          Length = 328

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 49/239 (20%)

Query: 1   MKQYHKFQ--RELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEE----------- 45
           MK Y +F   + +   L+          + +      +L N      E+           
Sbjct: 3   MKLYERFLNSKTMASQLRDACTGNMPSKALALITNLKKLCNHPALIYEKCIEKTDGFENC 62

Query: 46  -----------KHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAF--- 88
                      K  +     K++ L+ ++          +++  ++   L   ++     
Sbjct: 63  SDLFPPGFSVKKQIRPEWSGKMRVLDGLLAYVKANTDDKVVLVSNYTQTLDLFEQLCILR 122

Query: 89  -------PQGRTLDKDPCTIQEWNEGKI----PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                      T  K    + ++N+ ++     +      + G GLNL  G N LV F  
Sbjct: 123 NYGFVRLDGSMTKKKRAKIVADFNDPQVGNSTFVFMLSSKAGGCGLNL-IGANRLVMFDP 181

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+        +   + R  + G K+  F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 182 DWNPAN-----DGQAMARVWRDGQKKICFIYRLLATGSIEEKIFQRQTHKKALSSCVVD 235


>gi|312374256|gb|EFR21846.1| hypothetical protein AND_16272 [Anopheles darlingi]
          Length = 1024

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QRE Y  +  ++I+  N A K          ++  +  N    +            + 
Sbjct: 369 KMQREWYTKILMKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 428

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
              +  K+  L+ ++ K       +++       L  L+                   + 
Sbjct: 429 LLENSGKMVVLDKLLRKLQEQESRVLIFSQMTRMLDILEDFCHWRGYHYCRLDGQTPHED 488

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I ++N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 489 RSNMIADYNAPDSKKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 542

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 543 RAHRIGQKKQVRVFRLITENTVEEKIVERAEVKLKLDKLVIQQGR 587


>gi|224052526|ref|XP_002188227.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6 [Taeniopygia
           guttata]
          Length = 1449

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 39/221 (17%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------VH 52
           +E+Y  L G+               ++ N   +  +     +                  
Sbjct: 740 KEVYQILNGD----MQILLGLSTLRKICNHPDFVADSPRILKSVPDAEAEDPNQFGYWKR 795

Query: 53  DEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCT 100
             K+  +E ++         ++              F                +      
Sbjct: 796 SGKMIVVESLLKIWHKQGHRVLFFTQSRQMMQILEVFVRYRNYSYLRMDGTTAVASRQPL 855

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++N +  I L        G G+NL  G + ++ +   W+       ++     R  + 
Sbjct: 856 VTKYNEDKSIFLFLLTTRVGGIGVNL-VGADRVIIYDPDWNPS-----VDTQARERAWRI 909

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G K+ V VY L+   TI+E +  R   K  + + +L   K+
Sbjct: 910 GQKKEVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ 950


>gi|195386402|ref|XP_002051893.1| GJ17250 [Drosophila virilis]
 gi|194148350|gb|EDW64048.1| GJ17250 [Drosophila virilis]
          Length = 5552

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 74/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2460 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKAQHGE 2519

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2520 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2579

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2580 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2635

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2636 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMN 2686


>gi|195035285|ref|XP_001989108.1| GH10228 [Drosophila grimshawi]
 gi|193905108|gb|EDW03975.1| GH10228 [Drosophila grimshawi]
          Length = 5820

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 74/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L+     A   N  +  ++  +        +  +   +         
Sbjct: 2557 KYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKAQHGE 2616

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      +   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2617 DPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERI 2676

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2677 DGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2732

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2733 --DLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMN 2783


>gi|56757896|gb|AAW27088.1| SJCHGC06070 protein [Schistosoma japonicum]
          Length = 319

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 18/179 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL---- 81
           +  K  Q       Y            KI+ L   + K  +    I++   F   L    
Sbjct: 57  QVHKLCQFYEVLSPYTLSSDAIISGSGKIEWLNENLPKLISEGHRILIFSQFVIMLDILE 116

Query: 82  ------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                  R          + +    I  +N   I +      + G G+NL  G + ++  
Sbjct: 117 EFLRITNRRYIRMDGSTPVSERQTLIDRFNSSSIEVFLLSTRAGGLGINLT-GADTVIIH 175

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + ++        +R    R  + G K  V V  LI++ T++E +L+    K  ++  +
Sbjct: 176 DIDFNP-----YNDRQAEDRCHRLGQKNPVHVIRLISEGTLEEGMLRIASEKLQMEQNV 229


>gi|225557945|gb|EEH06230.1| lymphocyte-specific helicase [Ajellomyces capsulatus G186AR]
          Length = 862

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 75/221 (33%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKI 56
            + ++     L    I +    +  ++     N    +         H          K+
Sbjct: 558 ERIEKAKTAQLAKREIASKKLQNPVMQARLACNSPHNFYWPWGDDPSHIDDTLITSSGKM 617

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQE 103
             L+ +I    +    I++   F + L                      +       IQ 
Sbjct: 618 LLLDRLIPCLISKGHKILIFSQFKTQLDLLQDYASYLRGWNCCRIDGAVSQVDRQAQIQA 677

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 678 FNTDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 731

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 732 KPVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGKFKSL 772


>gi|327300239|ref|XP_003234812.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
 gi|326462164|gb|EGD87617.1| hypothetical protein TERG_03864 [Trichophyton rubrum CBS 118892]
          Length = 777

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 27/220 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIK 57
            + +R     L  + I +    +  ++   + N  + +                   K+ 
Sbjct: 477 DEIERAKTMKLAKKEISSKKLQNPVMQARLVCNSPLNFYWPWGEDSGVDSTLITSSGKML 536

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQE 103
            L+ ++    +    +++   F   L  L+    Q R+             D+       
Sbjct: 537 LLDRLVPCLISKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAF 596

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N+    +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 597 NNDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 650

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + TI++ +L+R  +K  ++ L++   K +++
Sbjct: 651 PVIVYRLATRGTIEQTLLERAGSKRRLEKLVIQKGKFKSL 690


>gi|260172512|ref|ZP_05758924.1| Snf2 family helicase [Bacteroides sp. D2]
 gi|315920805|ref|ZP_07917045.1| Snf2 family helicase [Bacteroides sp. D2]
 gi|313694680|gb|EFS31515.1| Snf2 family helicase [Bacteroides sp. D2]
          Length = 946

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTDRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++        ++  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFHERGWKYALLTGSTNNRPSEIAHFTDQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|168042528|ref|XP_001773740.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
 gi|162674996|gb|EDQ61497.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
          Length = 1791

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 40/227 (17%)

Query: 4    YHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDE----------------- 44
            Y          L   +  +   N  +  ++  ++ N     D                  
Sbjct: 974  YKAILENNVASLLKGSSTSNLPNLRNVAMELRKVCNHPFLCDGLEDSLTAKLRSNANDSN 1033

Query: 45   -EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
               +  +    K+  ++ ++ K       +++   F   L  L+          +     
Sbjct: 1034 ASGNLLQNSSGKMILVDKLLPKLKDAGRRVLIFSQFTIMLDLLEDYMIMKGYSYERIDGK 1093

Query: 98   ------PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +   +  I +      + G G+ L    +  + +   W+ +      +
Sbjct: 1094 IRGSERQAAIDRYSAKDSDIFVFLLSTRAGGLGITLTA-ADTCIIYDSDWNPQN-----D 1147

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + R  + G  + V +Y LI +NT +E + +    K  + + +L 
Sbjct: 1148 LQAMARCHRIGQTKDVKIYRLITRNTYEERLFECSSRKYGLDEAILG 1194


>gi|83715974|ref|NP_001032909.1| chromodomain-helicase-DNA-binding protein 1-like [Bos taurus]
 gi|122139236|sp|Q3B7N1|CHD1L_BOVIN RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|78174364|gb|AAI07535.1| Chromodomain helicase DNA binding protein 1-like [Bos taurus]
 gi|296489521|gb|DAA31634.1| chromodomain-helicase-DNA-binding protein 1-like [Bos taurus]
          Length = 897

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 290 KYYKAILMKDLDAFENETAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASG 349

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 350 KLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIK 409

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I        + G G+NL    + ++FF   ++ +      +     R  + G  
Sbjct: 410 NFGQQPIFTFLLSTRAGGVGMNLTA-ADTVIFFDSDFNPQN-----DLQAAARAHRIGQN 463

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + + ++  
Sbjct: 464 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIEG 498


>gi|320587436|gb|EFW99916.1| DNA repair and recombination protein rad54 [Grosmannia clavigera
           kw1407]
          Length = 809

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 44/217 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       ++ +
Sbjct: 511 LKAINILKKLCNHPDLLNLADDLPGSERCCPDDYVAKEARGRDREVKPWYSGKMMVLERM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++ S L   ++                 + K    +  +N+   
Sbjct: 571 LARIRAETNDKIVLISNYTSTLDLFERLCRNRAYGCLRLDGTMNVSKRQKLVDRFNDPDG 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 SEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Y  IA  TI+E + QR   K ++   +++A   + + 
Sbjct: 685 YRFIATGTIEEKIFQRQSHKQSLSTCVVDAAAGDDVE 721


>gi|50285639|ref|XP_445248.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524552|emb|CAG58154.1| unnamed protein product [Candida glabrata]
          Length = 1115

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEKH 47
            Q++ Y  +  ++I+A N+            +  ++  +  N    +             
Sbjct: 415 MQKKWYRQILEKDIDAVNADSGSKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 474

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
               + EK+K L+ ++ K     + +++    +  L  L+                   +
Sbjct: 475 HLVYNSEKLKVLDKLLRKLKEAGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHE 534

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N       L      + G G+NL    +++V F   W+ +      +   +
Sbjct: 535 DRIEAIDEYNAPDSKKFLFLLTTRAGGLGINLTT-ADVVVLFDSDWNPQA-----DLQAM 588

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+ V V+  +  N+++E +L+R   K  +  L++ 
Sbjct: 589 DRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLRLDQLVIQ 631


>gi|323451192|gb|EGB07070.1| hypothetical protein AURANDRAFT_28341 [Aureococcus anophagefferens]
          Length = 396

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 36/226 (15%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           + Y     +    L G    ++  +  +  ++  +  N        +  +          
Sbjct: 177 RYYRALYEKNVTMLAGGGRAVDGPSMMNLAMELRKCCNHPFLLKGVEFRELESSGHGVAE 236

Query: 55  ---------KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
                    K++ ++ I+ K       ++V   F   L  L+               G T
Sbjct: 237 VDRLVDACGKLQFMDKILPKLFDEQRKVLVFSQFTMMLNVLEDYLRARAVVYGRIDGGVT 296

Query: 94  LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +++      L+     + G G+NL    + ++ +   W+ +      +  
Sbjct: 297 GRDRQRQIDAFSDAGSKMRLMLLSTRAGGVGINLVA-ADTVIIYDSDWNPQN-----DVQ 350

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  + G  + V VY L+   T +  +      K  +   +L+ 
Sbjct: 351 AMARCHRIGQTKKVTVYRLLTAKTYEAHMYDVATAKLDLDRAVLDG 396


>gi|148682990|gb|EDL14937.1| mCG131426 [Mus musculus]
          Length = 1955

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     R              +  +  +   +  N    +               +  
Sbjct: 969  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1028

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1029 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1088

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1089 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1142

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1143 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1184


>gi|320031640|gb|EFW13600.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1123

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 434 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 493

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  K   + +++    +  L  L+                   +  
Sbjct: 494 VDNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGSTAHEDR 553

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N  +    +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 554 IAAIDDYNRPESDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 607

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 608 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 653


>gi|2645433|gb|AAB87383.1| CHD3 [Homo sapiens]
          Length = 1944

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|302510487|ref|XP_003017195.1| hypothetical protein ARB_04072 [Arthroderma benhamiae CBS 112371]
 gi|291180766|gb|EFE36550.1| hypothetical protein ARB_04072 [Arthroderma benhamiae CBS 112371]
          Length = 1541

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1254 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1313

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1314 TVLDFQQRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1367

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1368 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1406


>gi|148342542|gb|ABQ59048.1| CHD1L protein [Homo sapiens]
          Length = 900

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 291 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 350

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K++ L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 351 KLQLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 410

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 411 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 464

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 465 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 499


>gi|113676533|ref|NP_001038584.1| INO80 complex homolog 1 [Danio rerio]
 gi|56207300|emb|CAI20655.1| novel protein similar to H.sapiens INOC1, INO80 complex homolog 1 (S.
            cerevisiae) (INOC1) [Danio rerio]
          Length = 1552

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 71/182 (39%), Gaps = 19/182 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
             +   Q    +     +K        K+  L++++   K+    +++       +  L++
Sbjct: 1074 VMALQQRHGWSFIRIPDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEE 1133

Query: 87   AFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                            +  ++        +   I +      + G G+NL    + ++F+
Sbjct: 1134 YMVYRKHTYMRLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTA-ADTVIFY 1192

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ +++
Sbjct: 1193 DSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI 1247

Query: 196  NA 197
            + 
Sbjct: 1248 SG 1249


>gi|190346466|gb|EDK38558.2| hypothetical protein PGUG_02656 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1224

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  E   A +       K ++  ++ N    ++E +            
Sbjct: 721 LYQQMLKHNALFVGAEVGSAKSGIKGLNNKIMQLRKICNHPFVFEEVEDVLNPSRMTNNS 780

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++ K   +   +++ +   S +  ++                     
Sbjct: 781 IWRSSGKFELLDRVLPKFKASGHRVLLFFQMTSVMDIMEDFLRLRNMKYLRLDGATKAED 840

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 841 RQEMLKLFNAPGSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDTDWNPHQ-----DLQAQD 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI   +++E++L+R   K  I   ++ A K
Sbjct: 895 RAHRIGQKNEVRILRLITNESVEEVILERAHQKLDIDGKVIQAGK 939


>gi|164425176|ref|XP_962568.2| hypothetical protein NCU06306 [Neurospora crassa OR74A]
 gi|157070819|gb|EAA33332.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R    DL  + I      +  ++   + N     Y       + +         K+
Sbjct: 559 EEIKRAQTLDLAKKEISNKKLGNPLMQLRLVCNSPHNFYNPWSNSDQPIDESIVTASGKM 618

Query: 57  KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
             L+ ++         I++   F               +        G   D     I++
Sbjct: 619 LLLDRLLPALFERGHKILIFSQFKTQLDILEEYCRELRSWDVCRIDGGVAQDDRRAQIEQ 678

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +  + +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 679 FNTDPDVKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRCHRIGQT 732

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R V VY L  + T++E +L     K  ++ L++
Sbjct: 733 RPVVVYRLATKGTVEEELLMSADAKRRLEKLVI 765


>gi|109113159|ref|XP_001110923.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform 1
            [Macaca mulatta]
          Length = 1947

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 976  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1035

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1036 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1095

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1096 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1149

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1150 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1191


>gi|55963369|emb|CAI11899.1| novel protein containing an SNF2 family N-terminal domain and a
            Helicase conserved C-terminal domain [Danio rerio]
          Length = 1582

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 71/182 (39%), Gaps = 19/182 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
             +   Q    +     +K        K+  L++++   K+    +++       +  L++
Sbjct: 1107 VMALQQRHGWSFIRIPDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEE 1166

Query: 87   AFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                            +  ++        +   I +      + G G+NL    + ++F+
Sbjct: 1167 YMVYRKHTYMRLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTA-ADTVIFY 1225

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ +++
Sbjct: 1226 DSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI 1280

Query: 196  NA 197
            + 
Sbjct: 1281 SG 1282


>gi|160883987|ref|ZP_02064990.1| hypothetical protein BACOVA_01961 [Bacteroides ovatus ATCC 8483]
 gi|156110717|gb|EDO12462.1| hypothetical protein BACOVA_01961 [Bacteroides ovatus ATCC 8483]
          Length = 946

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTDRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++        ++  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFHERGWKYALLTGSTNNRPSEIAHFTDQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|49022903|dbj|BAC41410.3| mKIAA0308 protein [Mus musculus]
          Length = 1890

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 128 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 187

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 188 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 247

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 248 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 304

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 305 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 361


>gi|327264196|ref|XP_003216901.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
           carolinensis]
          Length = 887

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHDE 54
           K Y     +     + E  +     +  ++  +       ++                  
Sbjct: 277 KFYKAILTKDLDAFENETGKKARLQNVLIQLRKCVAHPYLFNGVEPEPFVIGDHLIEVSG 336

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    A    +++     + L  LQ                   ++    I+
Sbjct: 337 KLNLLDNLLAFLYAGGHRVLLFSQMTNMLDILQDYMDYRGYSYERLDGSVRGEERHLAIK 396

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + +VF    ++ +      +   + R  + G  
Sbjct: 397 NFGQQPIFVFLLSTRAGGVGMNLTS-ADTVVFVDNDFNPQN-----DLQAIARAHRIGQN 450

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +  LI ++TI+E++ +R  +K  + + ++  
Sbjct: 451 KPVKIIRLIGRDTIEEIIYRRAASKLQLTNTIIEG 485


>gi|297663856|ref|XP_002810379.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           1 [Pongo abelii]
          Length = 903

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 293 KYYKAILMKDLDAFENEMAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 352

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 353 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 412

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 413 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 466

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 467 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 501


>gi|189237363|ref|XP_970443.2| PREDICTED: similar to kismet CG3696-PA [Tribolium castaneum]
          Length = 4044

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      A   N  +  ++  +        +  +   +         
Sbjct: 1802 KYYRAILERNFSFLSKGTTHANIPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYKMAQGE 1861

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 1862 DPDAYYKALINSSGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLMFRKYPFERI 1921

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  ++       +      + G G+NL    + ++ +   W+ +    
Sbjct: 1922 DGRIRGNLRQAAIDRFSRPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 1977

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 1978 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2028


>gi|168012021|ref|XP_001758701.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162690311|gb|EDQ76679.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1220

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 30/225 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------EEKHWKEVHD 53
           Y     + Y  L  +     +  +  ++  +L       +          E       + 
Sbjct: 558 YKAILTKNYQILAKQGGPQVSLTNVVMELRKLCGHPYLLEGVEPTVRNQAEANRQLLENS 617

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ ++ K +     +++   F   L  L+                 +  +    I
Sbjct: 618 GKLLLLDKMMTKLHAQGHRVLIYSQFTRMLDILEDWLHLKKWGYERIDGKISGSERQIRI 677

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N              + G G+NL    + ++ +   W+        +   + R  + 
Sbjct: 678 DRYNAPNSTKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHRL 731

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G +  V ++ L+ + TI+E ++Q  + K  ++ L++  +KKE I+
Sbjct: 732 GQQNKVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRMKKENIN 776


>gi|125543874|gb|EAY90013.1| hypothetical protein OsI_11583 [Oryza sativa Indica Group]
          Length = 1411

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
            +     + +         K++ L++++ +  A    +++       L  L+         
Sbjct: 1076 SSPPMSNFDPAKMLTDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFK 1135

Query: 91   -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       D+        N   I +      + G G+NL    + ++F+ + W+  +
Sbjct: 1136 YFRLDGSSAISDRRDMVRDFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYEIDWNPTQ 1194

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q       + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1195 DQ-----QAMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 1241


>gi|67523659|ref|XP_659889.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|74681303|sp|Q5BAZ5|INO80_EMENI RecName: Full=Putative DNA helicase ino80
 gi|40745240|gb|EAA64396.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|259487678|tpe|CBF86533.1| TPA: Putative DNA helicase ino80 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5BAZ5] [Aspergillus
            nidulans FGSC A4]
          Length = 1612

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1319 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1378

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                      I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1379 TVADFQQRPDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1432

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI ++TI+E + +R   K  +Q ++++ 
Sbjct: 1433 LGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISG 1471


>gi|119596386|gb|EAW75980.1| chromodomain helicase DNA binding protein 6, isoform CRA_g [Homo
           sapiens]
          Length = 1875

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 40/235 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           K Y     + +  L          N  +  ++  +  N     +EEK  ++         
Sbjct: 32  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINEEKILEDFRKTHSPDA 91

Query: 54  ------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                        K+  ++ ++ K  A    +++       L  L+    Q R   +   
Sbjct: 92  PDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERID 151

Query: 98  --------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      I  + +      +      + G G+NL    +  + F   W+ +     
Sbjct: 152 GRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN---- 206

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 207 -DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 260


>gi|322711378|gb|EFZ02951.1| chromatin remodelling complex ATPase chain ISW1 [Metarhizium
           anisopliae ARSEF 23]
          Length = 1056

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 366 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 425

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+               G   +  
Sbjct: 426 VYNAGKMAVLDKLLVRLQKQGSRVLIFSQMSRLLDILEDYCVFRDYKYCRIDGGTAHEDR 485

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 486 IAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQA-----DLQAMDR 539

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 540 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 583


>gi|311258350|ref|XP_003127574.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Sus
           scrofa]
          Length = 1641

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y     R              +  +  +   +  N    +               +  
Sbjct: 560 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 619

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 620 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 679

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 680 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 733

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 734 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 775


>gi|293343243|ref|XP_002725430.1| PREDICTED: Chd9 protein-like isoform 2 [Rattus norvegicus]
          Length = 2876

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|303312905|ref|XP_003066464.1| Chromatin remodeling complex ATPase chain Iswi, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106126|gb|EER24319.1| Chromatin remodeling complex ATPase chain Iswi, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1123

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 434 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 493

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  K   + +++    +  L  L+                   +  
Sbjct: 494 VDNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGSTAHEDR 553

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N  +    +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 554 IAAIDDYNRPESDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 607

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 608 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 653


>gi|119498495|ref|XP_001266005.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
 gi|119414169|gb|EAW24108.1| RSC complex subunit (Sth1), putative [Neosartorya fischeri NRRL 181]
          Length = 1405

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            + Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 782  RLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 841

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 842  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 901

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 902  RSDLLKLFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQD 955

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 956  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1000


>gi|293343241|ref|XP_002725429.1| PREDICTED: Chd9 protein-like isoform 1 [Rattus norvegicus]
          Length = 2867

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|17508659|ref|NP_492438.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-54) [Caenorhabditis elegans]
 gi|6580237|emb|CAB63308.1| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|6580248|emb|CAA22254.2| C. elegans protein W06D4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 818

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 47/237 (19%)

Query: 3   QYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------------- 44
            Y+K    +++     + +   A ++ S      +L N      +               
Sbjct: 472 LYNKLIECEKQNRIVEKDKGATA-SALSFITHLKKLCNHPYLVYDEFQKPDNRFRNKCLS 530

Query: 45  -------EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF------ 88
                   K +      K+K L+ I+    K      ++  ++   + +  +        
Sbjct: 531 IFPESFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYD 590

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   ++ +    +  +N+    I        + G GLNL  G N LV F   W+  
Sbjct: 591 FVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNL-IGANRLVMFDPDWNPA 649

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 +   + R  + G K+  F+Y L+A  +I+E + QR   K  +   +++A +
Sbjct: 650 N-----DDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGE 701


>gi|293400916|ref|ZP_06645061.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305942|gb|EFE47186.1| SWF/SNF family helicase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1107

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 25/220 (11%)

Query: 2    KQY----HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            K Y     +  + L   LQ E  + F   +   +  Q+        E          K+ 
Sbjct: 885  KLYLANLSQVNQALSKHLQMERPDKFAILAMLTRLRQICCEPRILYEN---ITTASSKLL 941

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
                ++E  + N   +++   F S L  L++   +            T  +    +Q++ 
Sbjct: 942  YCLDLLETLRENHQRVLLFSSFTSVLDILEEELIKRRFSYLKLTGNNTKQQRRDMVQQFQ 1001

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G   +      + G GLNL    + ++ F  WW++             R  + G  + V
Sbjct: 1002 NGLTDVFLISLKAGGTGLNLTA-ASAVIHFDPWWNVSAQ-----NQATDRAYRIGQNQNV 1055

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VY LI +++I+E +    + K  + D  +   +    H+
Sbjct: 1056 QVYKLIMKDSIEEKIQTLQKMKKDLSDHFVEENEGSIYHM 1095


>gi|297663858|ref|XP_002810380.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform
           2 [Pongo abelii]
          Length = 696

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 86  KYYKAILMKDLDAFENEMAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 145

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 146 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 205

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 206 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 259

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 260 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 294


>gi|319936092|ref|ZP_08010514.1| SWF/SNF family helicase [Coprobacillus sp. 29_1]
 gi|319808879|gb|EFW05397.1| SWF/SNF family helicase [Coprobacillus sp. 29_1]
          Length = 1069

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 21/204 (10%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE- 64
            +  + L   L    +   +  +   +  QL   +    E     E    K+K    +I  
Sbjct: 855  QVNKSLQEKLDIHQLGRIDILAMLTRLRQLCQDSRLLYET---VEEPSSKLKGCMELIHS 911

Query: 65   -KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLF 113
             K N   I++   F S L  +++   +               K    +  + + +  L  
Sbjct: 912  LKENHKKILLFSSFTSVLHLIEEQCHKEHISYYLLDGSISKEKRKKMVDAFQKDETTLFL 971

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL      ++ F  WW++             R  + G K AV V+ LI +
Sbjct: 972  ISLKAGGAGLNLTS-AQAVIHFDPWWNMSAK-----NQATDRAHRIGQKEAVQVFSLIMK 1025

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            N+I+E ++     K  + D  +  
Sbjct: 1026 NSIEEKIMDLQNQKKNLADTFVEG 1049


>gi|254568884|ref|XP_002491552.1| Protein involved in transcription-coupled repair nucleotide
           excision repair of UV-induced DNA lesion [Pichia
           pastoris GS115]
 gi|238031349|emb|CAY69272.1| Protein involved in transcription-coupled repair nucleotide
           excision repair of UV-induced DNA lesion [Pichia
           pastoris GS115]
 gi|328351939|emb|CCA38338.1| DNA excision repair protein ERCC-6 [Pichia pastoris CBS 7435]
          Length = 1088

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 41/232 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------D 53
            Y KF R    +L                  ++ N     D     +             
Sbjct: 594 LYEKFLRS--DELSRILQGKRQVLYGIDILRKICNHPDLVDVHAKRRSKKDPTYGSASKS 651

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLAR----------------------LQKAFP 89
            K++ ++ ++   K+     ++       L                          +   
Sbjct: 652 GKMQVVKKLLELWKSQGHKTLLFTQTRQMLDILESFLERLNAKGAEEEDFVPFKFLRMDG 711

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +        N+    +        G G+NL  G N ++ +   W+        +
Sbjct: 712 TTSIGVRQSLVDVFNNDPSYNVFLLTTRVGGLGVNLT-GANRVIIYDPDWNPST-----D 765

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G K+ V +Y L+   +I+E +  R   K  + + +L   K+ 
Sbjct: 766 VQARERAWRLGQKKDVTIYRLMIAGSIEEKIYHRQIFKQFLTNKILKDPKQR 817


>gi|46127169|ref|XP_388138.1| hypothetical protein FG07962.1 [Gibberella zeae PH-1]
          Length = 856

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 562 LKAINILKKLCNHPDLLNMSDDLPGSEKCYPDDYVPKEARGRDREVKSWYSGKMAVLDRM 621

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++ S L   +K                 ++K    +  +N+ + 
Sbjct: 622 LARIRQDTNDKIVLISNYTSTLDLFEKLCRSRQYGSLRLDGTMNVNKRQKLVDRFNDPEG 681

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 682 DEFIFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 735

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 736 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 767


>gi|311268329|ref|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 [Sus
            scrofa]
          Length = 2002

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|320581104|gb|EFW95326.1| transcriptional accessory protein [Pichia angusta DL-1]
          Length = 1878

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            + Y  F ++   +++       E+    +         +L N A      KH +      
Sbjct: 1547 QLYKDFIKKQKTNVEKDLHASDESQSKQHIFQALQYMRKLCNHAALVLTPKHPQYNDVMK 1606

Query: 51   ------------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSD 80
                         H  K+ +L+ ++ +                   +    ++       
Sbjct: 1607 YLKTYDMDIRDIEHSPKLMSLKNLLLECGIGSDGGQKGVIPAENVISQHRALIFCQMKDM 1666

Query: 81   LARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  ++    +                  K    ++++N +  I +L       G GLNL 
Sbjct: 1667 LDMVENDLLKKHMPGVTYLRLDGSTEPRKRQDVVRKFNNDPSIDVLLLTTKVGGLGLNLT 1726

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+      M +   + R  + G K+ V VY LI ++T++E ++   + 
Sbjct: 1727 -GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKF 1780

Query: 187  KSTIQDLLLN 196
            K  I   ++N
Sbjct: 1781 KMNIASTIIN 1790


>gi|168051599|ref|XP_001778241.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162670338|gb|EDQ56908.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1245

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------EEKHWKEVHD 53
           Y     + Y  L  +     +  +  ++  +L       +          E       + 
Sbjct: 558 YKAILTKNYQILAKQGGPQVSLTNVVMELRKLCGHPYLLEGVEPTVRNQAEANRQLLENS 617

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ ++    +    +++   F   L  L+                 +  +    I
Sbjct: 618 GKLLLLDKMMTKLHSQGHRVLIYSQFTRMLDILEDWLHLKKWGYERIDGKISGSERQIRI 677

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N              + G G+NL    + ++ +   W+        +   + R  + 
Sbjct: 678 DRYNSPNSTKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHRL 731

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G +  V ++ L+ + TI+E ++Q  + K  ++ L++  +KKE I+
Sbjct: 732 GQQNKVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRMKKENIN 776


>gi|225557800|gb|EEH06085.1| DNA ATP-dependent helicase [Ajellomyces capsulatus G186AR]
          Length = 1676

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1379 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1438

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +      +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1439 TVLDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1492

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1493 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1531


>gi|294655844|ref|XP_002770188.1| DEHA2C08294p [Debaryomyces hansenii CBS767]
 gi|199430649|emb|CAG86104.4| DEHA2C08294p [Debaryomyces hansenii]
          Length = 1034

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 84/226 (37%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYDEEK--------H 47
             QR+ Y  +  ++I+A N A+K           ++  +  N    ++  +         
Sbjct: 396 DMQRKWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 455

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
               + +K+  L+ ++   K   + +++    +  L  ++                    
Sbjct: 456 HLVYNSQKMIILDKLLKKFKQEGSRVLIFSQMSRMLDIMEDYCMFRDYEYCRIDGQTDHA 515

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+NE      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 516 DRVNAIDEYNEPGSSKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAM 569

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  +++N I+E VL+R   K  +  L++   +
Sbjct: 570 DRAHRIGQTKQVRVFRFVSENAIEEKVLERATQKLRLDQLVIQQGR 615


>gi|327276403|ref|XP_003222959.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like isoform 2
            [Anolis carolinensis]
          Length = 2876

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1104 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRETYNP 1163

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   K+    +++       L  L+      R L + 
Sbjct: 1164 SAPDFHLQAMIQSAGKLVLIDKLLPKMKSGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1223

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1224 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1280

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 1281 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSV 1337


>gi|293355127|ref|XP_002728634.1| PREDICTED: rCG44314-like [Rattus norvegicus]
          Length = 2802

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|225678415|gb|EEH16699.1| lymphoid specific helicase variant3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 892

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIK 57
           + +R     L  + I +    +  ++     N    +                    K+ 
Sbjct: 587 RIERAKTAQLAKKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSSVDSSLITSSGKML 646

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            ++ +I    +    I++   F + L                      +       I  +
Sbjct: 647 LIDRLIPCLMSKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQADRQAQIAAF 706

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 707 NTDPNYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 760

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 761 PVIVYRLATRGTVEQTLLEKADSKRKLEKLVIQKGKFKSL 800


>gi|224371758|ref|YP_002605922.1| putative helicase [Desulfobacterium autotrophicum HRM2]
 gi|223694475|gb|ACN17758.1| putative helicase [Desulfobacterium autotrophicum HRM2]
          Length = 942

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y    +E     +G             +  Q+A+      E K   ++   K + L   
Sbjct: 729 MYKNAIKEEIAK-KGLKQSQLFVLQALGELRQIAS----IPEIKSDNQIISPKREVLMEH 783

Query: 63  IEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           + +A      +++  +F   L  +               G T D+     +   +     
Sbjct: 784 VTEAVAGNHKVLIFANFLHSLDCISLDMEKAGLDHLVMTGATRDRSAIVERFQTDNSCAA 843

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL    + +  F  WW++       E   + R  + G K  VF Y LI
Sbjct: 844 LMMTLKTGGLGLNLTA-ADYVFLFDPWWNVAA-----ENQAIDRAHRMGQKNTVFSYRLI 897

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           A+NTI+E +L+    K  + D L+ A       +
Sbjct: 898 ARNTIEEKILKLQAKKKALFDSLIAADNASIKQM 931


>gi|149032671|gb|EDL87541.1| rCG44314 [Rattus norvegicus]
          Length = 2698

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|134055454|emb|CAK43969.1| unnamed protein product [Aspergillus niger]
          Length = 1163

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 437 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 496

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 497 VYNAGKMTILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 556

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 557 IAAIDEYNKPGSEKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQAMDR 610

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 611 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 656


>gi|242040921|ref|XP_002467855.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
 gi|241921709|gb|EER94853.1| hypothetical protein SORBIDRAFT_01g035270 [Sorghum bicolor]
          Length = 1478

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
            +     + +         K+  L++++ +  +    +++       L  L+         
Sbjct: 1136 SSPPMSNFDPAKMLTDSGKLHTLDMLLRRLRSEGHRVLLFAQMTKMLDILEDYMNFRKFK 1195

Query: 91   -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       D+        N   + +      + G G+NL    + ++F+ + W+  +
Sbjct: 1196 YFRLDGSSAISDRRDMVRDFQNRNDVFVFLLSTRAGGLGINLTA-ADTVIFYEIDWNPTQ 1254

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q       + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1255 DQ-----QAMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 1301


>gi|212534786|ref|XP_002147549.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069948|gb|EEA24038.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1115

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 426 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 485

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L  L+                   +  
Sbjct: 486 VDNSGKMVVLDKILNRMKKQGSRVLIFSQMSRVLDILEDYCVFREHKYCRIDGSTAHEDR 545

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 546 IAAIDEYNKEGSDKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G K+ V V+  + ++ I+E VL+R   K  +  L++   + +
Sbjct: 600 AHRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVIQQGRAQ 645


>gi|301771598|ref|XP_002921219.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like,
           partial [Ailuropoda melanoleuca]
          Length = 1363

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 354 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 413

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ I+ K       +++       L  L+          +         
Sbjct: 414 ALIKASGKLMLLQKILRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 473

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 474 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 527

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 528 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 569


>gi|296809533|ref|XP_002845105.1| helicase [Arthroderma otae CBS 113480]
 gi|238844588|gb|EEQ34250.1| helicase [Arthroderma otae CBS 113480]
          Length = 869

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 77/221 (34%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKI 56
            + +R     L  + I      +  ++   + N  + +                    K+
Sbjct: 568 EEIERAKTMKLAKKEISTKKLQNPVMQARLVCNSPLNFYWPWDENSPGVDSTLVTSSGKM 627

Query: 57  KALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTIQ 102
             L+ ++    +    +++   F        D A   +++   R        D+      
Sbjct: 628 LLLDRLVPCLISKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINA 687

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 688 FNQDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 741

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L+R  +K  ++ L++   K +++
Sbjct: 742 KPVIVYRLATRGTVEQTLLERAGSKRRLEKLVIQKGKFKSL 782


>gi|195582827|ref|XP_002081227.1| GD10909 [Drosophila simulans]
 gi|194193236|gb|EDX06812.1| GD10909 [Drosophila simulans]
          Length = 1001

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|182625182|ref|ZP_02952958.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
 gi|177909641|gb|EDT72075.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
          Length = 1069

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +    +  N  +   K  ++         +         K+  ++ I++    +   I++
Sbjct: 863  EKSGRDKINLFAYLTKLREICLDPSLVVPDYT---GGSSKLTVVKEIVKDASESGKKILL 919

Query: 74   AYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F S L                   G +       ++++N +  I +      + G G
Sbjct: 920  FSQFTSVLQKIEEDFKKDDISYLYLDGGTSAKDRVERVKKFNEDSNIKVFLISLKAGGVG 979

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    ++++ F  WW+       +E     R  + G +  V V  L+A +TI+E ++ 
Sbjct: 980  LNLTS-ASVVIHFDPWWNPA-----VEDQATDRAHRFGQENKVEVIKLVANDTIEEKIVL 1033

Query: 183  RLRTKSTIQDLLLNA 197
                K  +   L++ 
Sbjct: 1034 MQEDKRELIQSLMDG 1048


>gi|145353082|ref|XP_001420858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581093|gb|ABO99151.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 522

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 28/207 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEV 61
           E     +G         S  ++  +  N    +      ++            K+  L+ 
Sbjct: 272 EKATKGEGGADNFQKLNSLLMQLRKCCNHPFLFTGTDVPEDGVPIEDLISASGKLAVLDR 331

Query: 62  IIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
           +++K       +++   F S L                        +    I  +N    
Sbjct: 332 MLQKLKEGGHRVVLFSQFTSMLDILQDFLTLRGYTYARLDGSTNRVQRSIDIAAFNRPDS 391

Query: 110 PLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           P+        + G G+NLQ   +  + F   W+ +     ++   + R  + G K+ V +
Sbjct: 392 PMFAFLLSTRAGGLGVNLQT-ADTCILFDSDWNPQ-----VDLQAMARVHRIGQKKMVHI 445

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Y L+   T++E + QR   K  +  ++
Sbjct: 446 YRLVTAGTVEERMTQRAEKKLFLDQMV 472


>gi|195116621|ref|XP_002002852.1| GI10760 [Drosophila mojavensis]
 gi|292630864|sp|B4KHL5|RAD54_DROMO RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|193913427|gb|EDW12294.1| GI10760 [Drosophila mojavensis]
          Length = 783

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      +L N      E+   KE                 
Sbjct: 428 VRRSLADCNEK--ASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQNVLPPNYKPK 485

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++      +   +++  ++   L   ++                T
Sbjct: 486 DVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMT 545

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+          +S   G  L   G N L  F   W+        +   
Sbjct: 546 IKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 600

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 601 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 644


>gi|329664944|ref|NP_001192313.1| putative DNA helicase INO80 complex homolog 1 [Bos taurus]
 gi|296483346|gb|DAA25461.1| brahma-like [Bos taurus]
          Length = 1566

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1093 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1152

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 1153 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1211

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1212 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1261



 Score = 35.1 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   I
Sbjct: 794 EDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFI 853

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +     +       +   L          ++L       +E     +  +   PA   +
Sbjct: 854 YRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSLFHRKGVNEESCFSFLRFIDVSPAEMAN 913

Query: 122 GLNLQYGGNILVFF 135
            +        L  F
Sbjct: 914 LMLQGLLARWLALF 927


>gi|170084045|ref|XP_001873246.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164650798|gb|EDR15038.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1573

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++++       +++ +     +  +++     +              +  
Sbjct: 1314 DSAKLARLDSLLQELKAGDHRVLIYFQMTRMMDLMEEYLIYRQYKYLRLDGSSKLEDRRD 1373

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              I       I +      + G G+NL    + +VF+   W+        +   + R  +
Sbjct: 1374 MVIDWQTRPDIFVFLLSTRAGGLGINLTA-ADTVVFYDHDWNPSN-----DAQAMDRAHR 1427

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  R V VY LI + TIDE ++Q  R K  +QD+++ 
Sbjct: 1428 LGQTRQVTVYRLITKGTIDERIIQLARVKKDVQDIVVG 1465


>gi|323450700|gb|EGB06580.1| hypothetical protein AURANDRAFT_71986 [Aureococcus anophagefferens]
          Length = 1131

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 19/207 (9%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y     +R+    ++G   +         +  ++ N      + +     +  +   L
Sbjct: 462 KMYRHVIRKRDEQAAVEGHVKDT---LGYIQRLQKICNHPALVAQPEGGSAANAREAAEL 518

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPA 117
             ++ + +  P                      +  K      ++N+             
Sbjct: 519 RSLMPEDDHMPRGRGGR----EGWHSCKLGGNTSTKKRKQFNDDFNDPGSGYFAFLLSSK 574

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  GG+ LV F L W+        ++    R  + G K   + Y  ++  T++
Sbjct: 575 AGGCGLNL-IGGSRLVMFDLDWNPAT-----DKQAAARCWRDGQKYQCYTYRFVSTGTLE 628

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
           E +LQR  +K  +Q+ ++   K +  H
Sbjct: 629 ERMLQRQLSKEGLQN-VIED-KAQVNH 653


>gi|194883574|ref|XP_001975876.1| GG20326 [Drosophila erecta]
 gi|190659063|gb|EDV56276.1| GG20326 [Drosophila erecta]
          Length = 1027

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 82/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N              + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|119192338|ref|XP_001246775.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 1075

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 386 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 445

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  K   + +++    +  L  L+                   +  
Sbjct: 446 VDNAGKMVILDKLLKRLKNQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGSTAHEDR 505

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N  +    +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 506 IAAIDDYNRPESDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 559

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 560 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 605


>gi|156551567|ref|XP_001601734.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 879

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 84/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          ++  +  N    +      
Sbjct: 232 IKVYIGLSKMQREWYTKVLMKDIDIVNGAGKIEKMRLQNILMQLRKCCNHPYLFDGAEPG 291

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----- 93
                      +  K+  L+ ++   +   + +++       L  L+             
Sbjct: 292 PPYTTDEHLVYNCGKLVILDKLLPKLQQQQSRVLIFSQMTRMLDILEDYCHWRCYQYCRL 351

Query: 94  -----LDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I E+N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 352 DGNTAHEDRQRQINEYNAPGSEKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 406

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G ++ V V+  I +NT++E +++R   K  +  L++   +
Sbjct: 407 -MDLQAMDRAHRIGQQKQVRVFRFITENTVEEKIVERAEVKLRLDKLVIQQGR 458


>gi|115389418|ref|XP_001212214.1| hypothetical protein ATEG_03036 [Aspergillus terreus NIH2624]
 gi|114194610|gb|EAU36310.1| hypothetical protein ATEG_03036 [Aspergillus terreus NIH2624]
          Length = 1896

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    L  +          +         +L N      +E H +       
Sbjct: 1569 KLFEDFTKKEQKQLASKMGSSEKSDKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1628

Query: 51   -----------VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1629 LHAKNSYIRDVSHAPKLTALRDLLLDCGIGVAPPSETDLGTGASYVSPHRALVFCQMKEM 1688

Query: 81   LARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q                  G    +    +  +N +    +L    +  G GLNL 
Sbjct: 1689 LDIVQSEVLKKLLPSVQFLRLDGGVEATRRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT 1748

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1749 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1802

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1803 KIDVASTVVN 1812


>gi|157127434|ref|XP_001654978.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108882413|gb|EAT46638.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 4467

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     + +  L      A   N  +  ++  +        +  +   +         
Sbjct: 2178 KYYRGILEQNFSFLMKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEDQIQYDYRQQHGD 2237

Query: 51   ----------VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                      V   K+  ++ ++ K  AN   +++       L  L+      +   +  
Sbjct: 2238 DAEAYYKNLIVSSGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLIYRKYPFERI 2297

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2298 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2353

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2354 --DLQAQARCHRIGQQKMVKIYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2404


>gi|302504248|ref|XP_003014083.1| hypothetical protein ARB_07803 [Arthroderma benhamiae CBS 112371]
 gi|291177650|gb|EFE33443.1| hypothetical protein ARB_07803 [Arthroderma benhamiae CBS 112371]
          Length = 1128

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +     +  ++  +  N    +               
Sbjct: 422 VKWYQKILEKDIDAVNGAQGNRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 481

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 482 IDNSGKMVILDKLLNRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 541

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 542 IQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 595

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 596 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 641


>gi|46446009|ref|YP_007374.1| swi/snf helicase family protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399650|emb|CAF23099.1| putative rapA, a bacterial member of the swi/snf helicase family
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 893

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 78/214 (36%), Gaps = 25/214 (11%)

Query: 2   KQYHKF----QRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--VHD 53
           + Y +F    +R L+  ++ E I           ++  Q+    +        KE  +  
Sbjct: 668 QHYEQFLANFKRNLFKKIEAEGITKHRLEVLEAILRLRQICCHPLLVSSIIEEKEDLITS 727

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQ 102
            K   L   ++  +     ++V   F S L              A+  G T +++    +
Sbjct: 728 AKFDLLMQDLQTIREEGRKVLVYSQFTSMLKLMTRYANQQGWTYAYLDGSTQNREKVVTE 787

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +  + F    + G GLNL    + ++ +  WW+     + +E   + R  + G +
Sbjct: 788 FQENLEQSIFFISLKAGGVGLNLTA-ADYVILYDPWWN-----EAVEEQAINRAHRIGRQ 841

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V     +   +I+E +++    K T+ D + +
Sbjct: 842 EQVIAKRFVVIESIEEKMMKLKAAKRTLVDDIFD 875


>gi|297699953|ref|XP_002827042.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 3-like [Pongo abelii]
          Length = 1945

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 943  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1002

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1003 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1062

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1063 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1116

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1117 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1158


>gi|258572046|ref|XP_002544805.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
 gi|237905075|gb|EEP79476.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
          Length = 1668

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1386 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1445

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1446 TVSDFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1499

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1500 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1538


>gi|293351605|ref|XP_220602.5| PREDICTED: chromodomain helicase DNA binding protein 3 [Rattus
            norvegicus]
          Length = 2047

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1072 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1131

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1132 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1191

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1192 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1245

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1246 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1287


>gi|295660997|ref|XP_002791054.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb01]
 gi|226280981|gb|EEH36547.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 1154

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 463 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 522

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 523 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 582

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 583 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 636

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 637 AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 682


>gi|327276401|ref|XP_003222958.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like isoform 1
            [Anolis carolinensis]
          Length = 2892

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1104 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRETYNP 1163

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   K+    +++       L  L+      R L + 
Sbjct: 1164 SAPDFHLQAMIQSAGKLVLIDKLLPKMKSGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1223

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1224 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1280

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 1281 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSV 1337


>gi|255565329|ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223537108|gb|EEF38742.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 2257

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 33/222 (14%)

Query: 2    KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVH--- 52
            + Y     + Y  L+  G+ +   +  +  ++  ++ N          +    + +H   
Sbjct: 922  EYYRAMLTKNYQILRNIGKGVPQQSMLNIVMQLRKICNHPYLIPGTEPDSGSVEFLHEMR 981

Query: 53   ---DEKIKALEVIIE--KANAAPIIVAYHFN------------SDLARLQKAFPQGRTLD 95
                 K+  L  +++        +++                     +  +      ++ 
Sbjct: 982  IKASAKLTVLHSMLKALYKEGHRVLIFSQMTKLLDVLEDYLTIEFGPKTYERVDGSVSVS 1041

Query: 96   KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +I  +N+ K   +      SCG G+NL    + +V +   ++        +   + 
Sbjct: 1042 DRQASISRFNQDKSRFVFLLSTRSCGLGINL-ATADTVVIYDSDFNP-----HADIQAMN 1095

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G    + VY L+ + +++E +LQ  + K  +  L +N
Sbjct: 1096 RAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1137


>gi|225848989|ref|YP_002729153.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644628|gb|ACN99678.1| helicase, Snf2 family [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 561

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 34/219 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +F+ E    +    +   N      K  Q+ N              H  K   L+ I
Sbjct: 344 IYKRFRNEKNFQI----MFKQNIIFSLQKLRQICNFPPNSY--------HSPKANRLKEI 391

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLDKDPCTIQEWNE 106
           +++   +   +IV  +F  +                            +K     +   +
Sbjct: 392 VKELTEDGEKVIVFSNFIQEGIGKIYKNLIEVLPQSSIVLYHGSLNQKEKQEAVKRFMKD 451

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GL L    + ++FF L W+  +           R  + G  +AV 
Sbjct: 452 KNCMVFLGSITAAGEGLTLTS-SSYIIFFDLHWNPAKVW-----QAEDRVHRIGQTKAVN 505

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +Y  + +NT++E ++Q+L  K +I + L++    E   V
Sbjct: 506 IYNFVTKNTVEEKIIQKLEEKKSIINNLIDDTVSEIESV 544


>gi|73955627|ref|XP_536627.2| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            isoform 3 [Canis familiaris]
          Length = 1977

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 971  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1030

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1031 ALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1090

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1091 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1144

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1145 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1186


>gi|325117475|emb|CBZ53027.1| hypothetical protein NCLIV_028160 [Neospora caninum Liverpool]
          Length = 2544

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 73/218 (33%), Gaps = 29/218 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH------- 52
            +K Y     + +  L  +     +S     ++  ++ N           ++         
Sbjct: 1242 LKFYRLILTKNFDLLAKKGGGNRSSLQNICMELKKVCNHPFLCQSPDEEEDGEEWRRLLV 1301

Query: 53   --DEKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
                K+      +   K     +++      D    ++              ++ +N   
Sbjct: 1302 DGSAKMGLLDKLLKRLKEKGHRVLIFSQMRLDGTMAKEV---------RRKAMEHFNAKN 1352

Query: 109  I--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                       + G G+NL    + ++ F   W+ +      +     R  + G  R V 
Sbjct: 1353 SEDFCFLLSTKAGGLGINLTS-ADTVIIFDSDWNPQN-----DLQAEARAHRIGQTRTVQ 1406

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +Y L+ +++I++ +L+R + K  +  L++  L + ++ 
Sbjct: 1407 IYRLVTKDSIEQTILERAKAKMVLDTLVVQGLNQRSLE 1444


>gi|240276494|gb|EER40006.1| DNA repair and recombination protein RAD26 [Ajellomyces capsulatus
           H143]
          Length = 819

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 38/212 (17%)

Query: 6   KFQRELY-CDLQGENIEAF-----NSASKTVKCLQLANGAVYYDE--------EKHWKEV 51
           K QR  Y   L    + +       +        ++ N     +           +    
Sbjct: 419 KLQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDLAEHKVLSKKPSYNYGSAS 478

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
              K++ ++ ++   +      ++       L                    +      I
Sbjct: 479 KSGKMQVVKSLLELWRDTGHKTLLFAQHRIMLDI----------------LERFIISMDI 522

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +        G G+NL  G + ++ +   W+        +     R  + G KR V +Y 
Sbjct: 523 HVFLLTTKVGGLGVNLT-GADRVIIYDPDWNPST-----DVQARERAWRLGQKREVTIYR 576

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 577 LMTAGTIEEKIYHRQIFKQFLTNKILKDPKQR 608


>gi|225559061|gb|EEH07344.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus G186AR]
          Length = 1142

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 449 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 508

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 509 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 568

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 569 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 622

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 623 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 668


>gi|326927241|ref|XP_003209801.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like
            [Meleagris gallopavo]
          Length = 2782

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1012 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYSP 1071

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1072 TAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1131

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1132 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1188

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 1189 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSV 1245


>gi|255083104|ref|XP_002504538.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226519806|gb|ACO65796.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1999

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR---- 83
            ++  Q+      +  ++   +    K++AL  ++         +++       L      
Sbjct: 1174 LRLAQVR--QQLFFPDRRLVQFDCGKLQALATLLRMKKSGGHKVLIFTQMTKMLDILEAF 1231

Query: 84   ------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             ++    +Q +N + ++        S G G+NL  G + +VF+ 
Sbjct: 1232 LNLYGYPYCRLDGTTRPEQRQIMMQRFNTDPRLFAFILSTRSGGFGINLT-GADTVVFYD 1290

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L+ + TI+E +L++   K  +    + 
Sbjct: 1291 SDWNPA-----MDQQAQDRAHRIGQTREVHIYRLVCKGTIEENILRKSMQKRELDHFAIQ 1345

Query: 197  A 197
            A
Sbjct: 1346 A 1346


>gi|224003061|ref|XP_002291202.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972978|gb|EED91309.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1008

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 30/222 (13%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           K Y     +       +G +       +  ++  + A     +                 
Sbjct: 391 KLYKDILMRDVDTLTGKGGSGSRTAVLNIVMQLRKCAGHPYLFPGIEDRSLPPLGEHLVE 450

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPC 99
           +  K+  L+ ++ +       +++             +               T +    
Sbjct: 451 NSGKMVLLDKLLIRLKERGHRVLLFTQMTRILDILEDYMHMRGFQYCRIDGNTTYEDREE 510

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N+      L      + G G+NLQ   ++++ F   W+ +      +     R  
Sbjct: 511 RIDEYNKPDSEKFLFLLSTRAGGLGINLQT-ADVVILFDSDWNPQA-----DLQAQDRAH 564

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G KR V V+ ++ ++TI++ V++R + K  +  +++   +
Sbjct: 565 RIGQKRTVQVFRIVTEDTIEQKVVERAQQKLKLDAMVVQQGR 606


>gi|145346994|ref|XP_001417965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578193|gb|ABO96258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 609

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 25/183 (13%)

Query: 32  CLQLA-----NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
             QL      +GA+          +   K++ L+ ++ +  A  +  ++   +   L  L
Sbjct: 404 LHQLCGDYMLDGALKDKMLDPEIGLQSAKVQRLQELLVELKAKGSRPLIFSQWKIMLDIL 463

Query: 85  QKAFPQG----------RTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +                  +D     +  +N  +  +        + G GLNL  G + +
Sbjct: 464 EWVLHHMGWKYARLDGDTAVDNRQELVDRFNAKDSYLDTFILSTRAGGQGLNLT-GADTV 522

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +     ++ +     I+R    R  + G  + V VY L+ + ++DE ++     K  +  
Sbjct: 523 ILHDCDFNPQ-----IDRQAEDRCHRLGQTKTVTVYRLVTEGSVDEKIVAIAEQKLNLGS 577

Query: 193 LLL 195
            +L
Sbjct: 578 TIL 580


>gi|18400745|ref|NP_565587.1| PKL (PICKLE); ATPase/ DNA binding / DNA helicase [Arabidopsis
           thaliana]
 gi|75193642|sp|Q9S775|PKL_ARATH RecName: Full=CHD3-type chromatin-remodeling factor PICKLE;
           AltName: Full=Protein GYMNOS
 gi|6318930|gb|AAF07084.1|AF185578_1 GYMNOS/PICKLE [Arabidopsis thaliana]
 gi|6478518|gb|AAF13875.1|AF185577_1 chromatin remodeling factor CHD3 [Arabidopsis thaliana]
 gi|330252572|gb|AEC07666.1| CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana]
          Length = 1384

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  ++  ++       +  +      +E       
Sbjct: 533 EYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLE 592

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
                ++    ++  K     +++   F   L  L+      +   +             
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQI 652

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 653 RIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 706

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 707 RLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNIN 753


>gi|322700261|gb|EFY92017.1| Putative DNA helicase ino-80 [Metarhizium acridum CQMa 102]
          Length = 1925

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 19/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
            +     H       K+  L+ ++ K       +++ +     +  +++            
Sbjct: 1637 FMVPSMHKFVTDSGKLAKLDELLFKLKNEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRL 1696

Query: 96   --------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                    +           +I +      + G G+NL    + ++F+   W+       
Sbjct: 1697 DGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT----- 1750

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I+   + R  + G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1751 IDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1800


>gi|311268331|ref|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1 [Sus
            scrofa]
          Length = 1968

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 994  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1053

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1054 ALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209


>gi|169863208|ref|XP_001838226.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Coprinopsis cinerea okayama7#130]
 gi|116500699|gb|EAU83594.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Coprinopsis cinerea okayama7#130]
          Length = 904

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 71/199 (35%), Gaps = 34/199 (17%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEV----------HDEKIKALEVIIEK--ANAAPIIVAYH 76
            ++  ++ +    +D     K +             K+  L+ ++ +       +++   
Sbjct: 591 VMQLRKVCSHPFLFDWPIDPKTMQPIIGEELVNASGKMMVLDRLLRELFRRGHKVLLFSQ 650

Query: 77  FNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEG-----KIPLLFAHPASCG 120
           F + L  ++                  +       ++ +  G        L      + G
Sbjct: 651 FTTMLDIIEDWAVENMGWSICRIDGSSSPLDRKAEMERFQTGGDDPDAPRLFLLSTRAGG 710

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    + ++F+   W+ +     ++     R  + G  + V ++ L++ +TI+  +
Sbjct: 711 LGINLVA-ADTVIFYDQDWNPQ-----MDAQAQDRAHRIGQTKPVLIFRLVSAHTIETNI 764

Query: 181 LQRLRTKSTIQDLLLNALK 199
           +QR   K  ++ L++   K
Sbjct: 765 MQRAAEKRKLEALVIAKGK 783


>gi|73946633|ref|XP_860170.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 15 [Canis familiaris]
          Length = 1550

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G   +    A    +  ++  ++ N    +   +            
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIESQIFKTQRTRKD 1022

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K  A    +++     S +  ++  F                + 
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++NE      +      + G GLNLQ   + +V F   W+  +     +     
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|70990968|ref|XP_750333.1| TBP associated factor (Mot1) [Aspergillus fumigatus Af293]
 gi|66847965|gb|EAL88295.1| TBP associated factor (Mot1), putative [Aspergillus fumigatus Af293]
          Length = 1891

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 60/249 (24%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    LQ +       +  +         +L N      +E H +       
Sbjct: 1566 KLFEDFTKKEQKALQDKVGSTEKADKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1625

Query: 51   -----------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSDL 81
                        H  K+ AL  ++                     +    ++       L
Sbjct: 1626 LAAKHSNIRDVAHAPKLSALRDLLIDCGIGVDSPSEGDLSGASYVSPHRALIFCQMKEML 1685

Query: 82   ARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q                       +    +  +N +    +L    +  G GLNL  
Sbjct: 1686 DIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT- 1744

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1745 GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFK 1799

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1800 IDVASTVVN 1808


>gi|226706291|sp|B5DE69|CHD8_XENTR RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8
          Length = 2184

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWK---------- 49
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1003 KYYRAILEKNFSFLTKGASQSNTPNLLNTMMELRKCCNHPYLITGAEEKIISEFREATPV 1062

Query: 50   ----------EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K  A    +++       L  L+    Q R L + 
Sbjct: 1063 VPPDFHVQAMVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1122

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1123 IDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1179

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV +Y LI +N+ +  +  +   K  +   +L ++     H+
Sbjct: 1180 ---DLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1236


>gi|212549607|ref|NP_001131089.1| chromodomain-helicase-DNA-binding protein 8 [Xenopus (Silurana)
            tropicalis]
 gi|197246330|gb|AAI68549.1| Unknown (protein for MGC:184754) [Xenopus (Silurana) tropicalis]
          Length = 2179

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWK---------- 49
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 998  KYYRAILEKNFSFLTKGASQSNTPNLLNTMMELRKCCNHPYLITGAEEKIISEFREATPV 1057

Query: 50   ----------EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K  A    +++       L  L+    Q R L + 
Sbjct: 1058 VPPDFHVQAMVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1117

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  ++       +      + G G+NL    +  + F   W+ +   
Sbjct: 1118 IDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1174

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV +Y LI +N+ +  +  +   K  +   +L ++     H+
Sbjct: 1175 ---DLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDNHL 1231


>gi|156383405|ref|XP_001632824.1| predicted protein [Nematostella vectensis]
 gi|156219886|gb|EDO40761.1| predicted protein [Nematostella vectensis]
          Length = 1022

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 86/232 (37%), Gaps = 40/232 (17%)

Query: 2   KQYH---KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKH-- 47
           K Y    K QR  Y  +  ++I+  N           +  ++  +  N    +D  +   
Sbjct: 375 KVYTGLTKMQRSWYTKILMKDIDVVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGP 434

Query: 48  ------WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
                     +  K++ L+ ++   K   + +++       L  L+      +       
Sbjct: 435 PYTTDVHLIENSGKMRVLDKLLARLKQEGSRVLIFSQMTRLLDILEDYCLWRQYDYCRLD 494

Query: 93  ---TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                ++    I  +N       +      + G G+NL    +I++ +   W+ +     
Sbjct: 495 GQTPHEERQAYINSFNMPGSTKFIFMLSTRAGGLGINL-ATADIVILYDSDWNPQ----- 548

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   + R  + G K+ V V+  I+++T++E +++R   K  +  +++   +
Sbjct: 549 VDLQAMDRAHRIGQKKQVKVFRFISESTVEERIIERAEMKLRLDAVVIQQGR 600


>gi|170041242|ref|XP_001848380.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167864826|gb|EDS28209.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 787

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 46/235 (19%)

Query: 2   KQYHKFQRE---LYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEE------------ 45
           + Y  F +        L+   ++A   + S      +L N      E+            
Sbjct: 407 ELYKSFLQSDSIRRSVLEKSEVKASLTALSNITALKKLCNHPDLVYEKIKERAEGFEEAY 466

Query: 46  ---------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                    K  +     K+  L+ ++   +      I++  ++   L   +K   +   
Sbjct: 467 KILPANYSAKEVRPEFGGKLMVLDCMLASIKMNTNDKIVLVSNYTQTLDLFEKLCRKRGY 526

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    T+ K    + E+N+      +      + G GLNL  G N LV F   W+ 
Sbjct: 527 GYVRLDGTMTIKKRGKVVDEFNKPDSKEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNP 585

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  +   + R  + G K+  F+Y L+A  +I+E + QR   K  + + +++
Sbjct: 586 AN-----DEQAMARVWRDGQKKPCFIYRLLATGSIEEKIFQRQTHKKALSNTVVD 635


>gi|52545542|emb|CAH56404.1| hypothetical protein [Homo sapiens]
          Length = 1059

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 340 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 399

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 400 SLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 459

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 460 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 513

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 514 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 555


>gi|303279448|ref|XP_003059017.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460177|gb|EEH57472.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 811

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 32  CLQLANGAVY-----YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARL 84
             QL           +            K + LE ++   K+  +  ++   +   L  L
Sbjct: 612 LHQLCEDPQLGGALAHKALPAEAAFDASKTRKLETLLADLKSKGSRPLIFSQWKIVLDIL 671

Query: 85  QK----------AFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNIL 132
           +                  +++       +N     +        + G GLNL  G +++
Sbjct: 672 EWALRERGHKFVRLDGSTAVEERQRICDAFNRDGSDIFAFLLSTRAGGQGLNLT-GADVV 730

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V     ++ +     I+R    R  + G  + V VY L+   T+DE +++    K  +  
Sbjct: 731 VIHDCDFNPQ-----IDRQAEDRSHRLGQTKPVTVYRLVTSGTVDERIVEIAEGKLALDA 785

Query: 193 LLLNALKK 200
            +L+  K 
Sbjct: 786 AILSDPKA 793


>gi|56800176|emb|CAI35991.1| chromodomain helicase DNA binding protein 3 [Mus musculus]
 gi|56800269|emb|CAI35246.1| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 2055

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1046 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1105

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1106 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1165

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1166 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1219

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1220 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1261


>gi|312074579|ref|XP_003140033.1| hypothetical protein LOAG_04448 [Loa loa]
 gi|307764800|gb|EFO24034.1| hypothetical protein LOAG_04448 [Loa loa]
          Length = 1841

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y +L      + N      ++  +  N +         +E          
Sbjct: 747 QYYKWILTKNYKELSKGVKGSINGFVNLVMELKKCCNHSSLVRSYDQPEEGADARLQQLL 806

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ +       +++       L  +Q+     R   +            
Sbjct: 807 KSSGKLILLDKLLCRLQETGHRVLIFSQMVMMLDIMQEYLQLRRFPSQRLDGSMRSDLRK 866

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N    P         + G G+NL    + ++ F   W+ +      +   ++R 
Sbjct: 867 AALDHFNAPNSPDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRA 920

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 921 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLIIQRM 962


>gi|170580649|ref|XP_001895355.1| recombination factor GdRad54 [Brugia malayi]
 gi|158597754|gb|EDP35808.1| recombination factor GdRad54, putative [Brugia malayi]
          Length = 865

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 77/236 (32%), Gaps = 45/236 (19%)

Query: 2   KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------ 45
           K Y +      +     +   +     + S      +L N       +            
Sbjct: 521 KLYRQLISAFSKGGKQKVTEGDKITGTALSFITNLKKLCNHPQLILNKCQKKEEGFEDCL 580

Query: 46  --------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDL----------ARL 84
                   K ++     K+K L+ ++           ++  ++   +             
Sbjct: 581 KLFPGEFGKKFEPAFSGKMKVLDYLLAATRATTNDKFVLVSNYTQTIDAFVELCQLRRYP 640

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   T+ +    ++++N+ +    +      + G GLNL  G N L+ F   W+  
Sbjct: 641 YIRLDGTCTIKQRAKLVEKFNDPESVEYVFLLSSKAGGCGLNL-IGANRLIMFDPDWNPA 699

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                 +   + R  + G K+  F+Y L++  +I+E + QR   K  +   +++ +
Sbjct: 700 N-----DDQAMARVWRDGQKKNCFIYRLLSTGSIEEKMFQRQAHKKALSSCVVDEI 750


>gi|62530244|gb|AAX85379.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530246|gb|AAX85380.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530248|gb|AAX85381.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
 gi|62530250|gb|AAX85382.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
            norvegicus]
          Length = 1959

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 950  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1009

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1010 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1069

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1070 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1123

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1124 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1165


>gi|68075951|ref|XP_679895.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500739|emb|CAH95008.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 1536

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEV------HD 53
           ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 641 IEYYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCCEPIDKDEYRERLVYSS 700

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
            KI  LE ++ +       +++       L              +      T +     +
Sbjct: 701 GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMTKEMRKKAM 760

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 761 NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 814

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 815 GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 856


>gi|316974135|gb|EFV57661.1| chromatin-remodeling complex ATPase chain Iswi [Trichinella
           spiralis]
          Length = 1075

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 81/220 (36%), Gaps = 29/220 (13%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWKEVHD 53
            Y K   +    + G   +E     +  ++  +  N    +D  +             + 
Sbjct: 432 MYTKILMKDIDIVNGAGKLEKARLLNILMQLRKCCNHPYLFDGAEPGPPFTTDQHLVDNC 491

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
            K+  ++ ++ K     + +++    +  L  L+      +             +   +I
Sbjct: 492 GKMVLVDKLLPKLKEQGSRVLIFSQMSRMLDILEDYCLWKQYPYCRLDGQTPHQERQASI 551

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G G+NL    +I++ +   W+ +     ++   + R  + 
Sbjct: 552 DAFNAPNSEKFIFMLTTRAGGLGINL-ATADIVILYDSDWNPQ-----MDLQAMDRAHRI 605

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V V+ LI +NT++E +++R   K  +  +++   +
Sbjct: 606 GQKKTVRVFRLITENTVEERIVERAEIKLRLDTVVIQQGR 645


>gi|299147035|ref|ZP_07040102.1| Snf2 family protein [Bacteroides sp. 3_1_23]
 gi|298514920|gb|EFI38802.1| Snf2 family protein [Bacteroides sp. 3_1_23]
          Length = 946

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTDRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            + A   G T ++        ++  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFHERGWKYALLTGSTNNRPSEIAYFTDQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|294947224|ref|XP_002785281.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239899054|gb|EER17077.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 945

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 73/244 (29%), Gaps = 46/244 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           + Y          L        +  +  ++  +           +               
Sbjct: 330 RVYKSVYEGKIYSLVNGKGGKSSLNNIAMELRKCCAHPYLISGVEDSHLEALGVKPDSAV 389

Query: 52  -------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                     K+  LE +I +       +++   F   L  ++                 
Sbjct: 390 AMQNLTEMSGKLVFLEKLIPQLREKKEKLLIFSQFKIVLDIIEDWLTWKKLPVERLDGSV 449

Query: 93  TLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +  K    I  +N+             + G G+NL    +++V +   W+ +      + 
Sbjct: 450 SGGKRQAAIDRFNDKKHDSFAFLLTTRAGGVGINLTS-ASVVVIYDSDWNPQN-----DN 503

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL---------KKE 201
               R  + G  + V VY L+ +N+ +E + +    K  ++  +++++         K+E
Sbjct: 504 QAQARCHRIGQTKTVRVYRLLTRNSYEEKLFEIASKKLGLEQAIMSSVTANSELNLSKQE 563

Query: 202 TIHV 205
             H+
Sbjct: 564 LEHL 567


>gi|238504258|ref|XP_002383360.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220690831|gb|EED47180.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 974

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 298 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 357

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   +   + +++    +  L  L+                   +  
Sbjct: 358 VYNAGKMSILDKLLARMQKQGSRVLIFSQMSRVLDILEDYCVFREYNYCRIDGTTAHEDR 417

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 418 IAAIDEYNKPGSDKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 471

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 472 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 517


>gi|119596385|gb|EAW75979.1| chromodomain helicase DNA binding protein 6, isoform CRA_f [Homo
           sapiens]
          Length = 1856

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 40/235 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           K Y     + +  L          N  +  ++  +  N     +EEK  ++         
Sbjct: 32  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINEEKILEDFRKTHSPDA 91

Query: 54  ------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                        K+  ++ ++ K  A    +++       L  L+    Q R   +   
Sbjct: 92  PDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERID 151

Query: 98  --------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      I  + +      +      + G G+NL    +  + F   W+ +     
Sbjct: 152 GRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN---- 206

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 207 -DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 260


>gi|255561731|ref|XP_002521875.1| ATP binding protein, putative [Ricinus communis]
 gi|223538913|gb|EEF40511.1| ATP binding protein, putative [Ricinus communis]
          Length = 756

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K +AL  ++ +   +   +++   + S L  L+                  + +    
Sbjct: 580 SAKCRALAELLPELRRDGHKVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTPVTERQTI 639

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N    I        + G GLNL  G + +V   + ++ +     I+R    R  + 
Sbjct: 640 VDAFNNDTSIFACLLSTRAGGQGLNLT-GADTVVIHDMDFNPQ-----IDRQAEDRCHRI 693

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +Y L+ + T+DE + +  + K T+   +L +
Sbjct: 694 GQTKPVTIYRLVTKGTVDENIYEIAKRKLTLDAAVLES 731


>gi|255936215|ref|XP_002559134.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583754|emb|CAP91771.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1116

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 32/215 (14%)

Query: 6   KFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYD--------EEKHWKEV 51
           + QR +Y    G +          NS        +++N     D        +    +  
Sbjct: 613 QLQRTIYKRFLGSDDMKSIIRGRRNSLYGIDILRKISNHPDLADHTLRSREADYGDAERS 672

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
              K+    + + +      ++       L  ++K                  + +    
Sbjct: 673 GKMKVLKGLLEVWRDTGHKTLLFTQGRLMLDIIEKFLGVLGGFNCRRMDGTTPIKERQSL 732

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++N +  I +        G G+NL  G + ++ +   W+        +     R  + 
Sbjct: 733 VNDFNNDPNIHVFLLTTRVGGIGVNLT-GADRVIIYDPDWNPST-----DLQARERAWRL 786

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G KR V ++ L+ + TI+E +  R   K  + + +
Sbjct: 787 GQKRDVTIFRLMTKGTIEEKIYHRQIFKQFLTNKI 821


>gi|146417920|ref|XP_001484927.1| hypothetical protein PGUG_02656 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1224

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH------ 52
            Y +  +     +  E   A +       K ++  ++ N    ++E +            
Sbjct: 721 LYQQMLKHNALFVGAEVGSAKSGIKGLNNKIMQLRKICNHPFVFEEVEDVLNPSRMTNNL 780

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ ++ K   +   +++ +   S +  ++                     
Sbjct: 781 IWRSSGKFELLDRVLPKFKASGHRVLLFFQMTSVMDIMEDFLRLRNMKYLRLDGATKAED 840

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 841 RQEMLKLFNAPGSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDTDWNPHQ-----DLQAQD 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI   +++E++L+R   K  I   ++ A K
Sbjct: 895 RAHRIGQKNEVRILRLITNESVEEVILERAHQKLDIDGKVIQAGK 939


>gi|46110288|ref|XP_382202.1| hypothetical protein FG02026.1 [Gibberella zeae PH-1]
 gi|84029313|sp|Q4IL82|INO80_GIBZE RecName: Full=Putative DNA helicase INO80
          Length = 1904

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ K  +    +++ +     +  +++                    +  
Sbjct: 1624 DSGKLAKLDDLLFKLKSEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDRRD 1683

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1684 TVHDFQTRPEIFIFLLSTRAGGLGINLTT-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1737

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1738 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVIQG 1776


>gi|56203112|emb|CAI19451.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
 gi|56417881|emb|CAI19894.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
          Length = 1195

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 474 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 533

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 534 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 593

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 594 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 647

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 648 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 689


>gi|20151803|gb|AAM11261.1| RH13158p [Drosophila melanogaster]
          Length = 1027

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|159130807|gb|EDP55920.1| TBP associated factor (Mot1), putative [Aspergillus fumigatus A1163]
          Length = 1891

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 60/249 (24%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    LQ +       +  +         +L N      +E H +       
Sbjct: 1566 KLFEDFTKKEQKALQDKVGSTEKADKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1625

Query: 51   -----------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSDL 81
                        H  K+ AL  ++                     +    ++       L
Sbjct: 1626 LAAKHSNIRDVAHAPKLSALRDLLIDCGIGVDSPSEGDLSGASYVSPHRALIFCQMKEML 1685

Query: 82   ARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q                       +    +  +N +    +L    +  G GLNL  
Sbjct: 1686 DIVQSEVFNKLLPSVQFLRLDGSVEATRRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT- 1744

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1745 GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFK 1799

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1800 IDVASTVVN 1808


>gi|17737463|ref|NP_523719.1| imitation SWI, isoform A [Drosophila melanogaster]
 gi|24653132|ref|NP_725203.1| imitation SWI, isoform B [Drosophila melanogaster]
 gi|24653134|ref|NP_725204.1| imitation SWI, isoform C [Drosophila melanogaster]
 gi|6647560|sp|Q24368|ISWI_DROME RecName: Full=Chromatin-remodeling complex ATPase chain Iswi;
           AltName: Full=CHRAC 140 kDa subunit; AltName:
           Full=Nucleosome-remodeling factor 140 kDa subunit;
           Short=NURF-140; AltName: Full=Protein imitation swi
 gi|439197|gb|AAA19868.1| ISWI protein [Drosophila melanogaster]
 gi|7303422|gb|AAF58479.1| imitation SWI, isoform A [Drosophila melanogaster]
 gi|21627326|gb|AAM68637.1| imitation SWI, isoform B [Drosophila melanogaster]
 gi|21627327|gb|AAM68638.1| imitation SWI, isoform C [Drosophila melanogaster]
 gi|206597326|gb|ACI15757.1| FI04427p [Drosophila melanogaster]
          Length = 1027

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|166240632|ref|XP_001732968.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988704|gb|EDR41103.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1838

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 21/167 (12%)

Query: 51   VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
                KI +L   + K       +  ++   + S L  L+      +             +
Sbjct: 1667 KSSTKIDSLLDELNKVFKNEPDSKCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQ 1726

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                I+ +  E  + +      + G GLNL    + +     WW+    +Q I+R+    
Sbjct: 1727 REVAIKRFKEEPNVKIFLISIKAGGLGLNLVA-ASHVFLMDPWWNPSTEEQAIDRV---- 1781

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G  + V V   + +++I+E +L   ++K  +    LN +KK+T
Sbjct: 1782 -YRIGQNKNVNVIRFLIKDSIEERILNLQKSKKDLAKEALNTMKKQT 1827


>gi|47215569|emb|CAG10740.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3070

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 43/238 (18%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           K Y     + +  L          N  +  ++  +  N           K +        
Sbjct: 523 KYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLITGSAEEKILESFRKSYS 582

Query: 54  ---------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                           K+  ++ ++ K  A    ++V       L  L+    Q R   +
Sbjct: 583 PDAADFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRRYSYE 642

Query: 97  D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                         I  + +      +      + G G+NL    +  + F   W+ +  
Sbjct: 643 RIDGRVRGNQRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN- 700

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 701 ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 754


>gi|316974280|gb|EFV57776.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 2137

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y     + +  L         +  +  +   +  N    +               E  
Sbjct: 993  KYYKYVLTKNFDALNTRCGGSQVSLLNIMMDLKKCCNHPYLFPIAASEAPKLPNGAFEGS 1052

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  ++          +         
Sbjct: 1053 ALVKSCGKLILLQKMLRMLKEGGHRVLIFSQMTKMLDLIEDFLEYEGYKYERIDGSVTGS 1112

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P  +      + G G+NL    + ++ +   W+        +    
Sbjct: 1113 LRQDAIDRFNAPNAPQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1166

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G  R V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1167 SRAHRIGQNRKVMIYRFVTRNSVEERITTVAKKKMMLTHLVVRA 1210


>gi|150951142|ref|XP_001387415.2| ATPase component of a four subunit chromatin remodeling complex
           [Scheffersomyces stipitis CBS 6054]
 gi|149388353|gb|EAZ63392.2| ATPase component of a four subunit chromatin remodeling complex
           [Pichia stipitis CBS 6054]
          Length = 860

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYY--------DEEKH 47
           + QR+ Y  +  ++I+A N A+K           ++  +  N    +             
Sbjct: 214 EMQRKWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDE 273

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------TLD 95
               + +K+  L+ ++ K     + +++    +  L  L+                    
Sbjct: 274 HLVYNSQKMIILDQLLRKFQKEGSRVLIFSQMSRMLDILEDYCFFREFKYCRIDGQTEHA 333

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I+V F   W+ +      +   +
Sbjct: 334 DRINAIDEYNKPGSDRFVFLLTTRAGGLGINLTS-ADIVVLFDSDWNPQA-----DLQAM 387

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  + +N I+E VL+R   K  +  L++   +
Sbjct: 388 DRAHRIGQTKQVKVFRFVTENAIEEKVLERATQKLRLDQLVIQQGR 433


>gi|124358950|ref|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 2021

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1046 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1105

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1106 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1165

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1166 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1219

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1220 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1261


>gi|52545633|emb|CAH56377.1| hypothetical protein [Homo sapiens]
          Length = 1061

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 333 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 392

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 393 SLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 452

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 453 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 506

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 507 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 548


>gi|326772974|ref|ZP_08232258.1| SNF2/helicase domain protein [Actinomyces viscosus C505]
 gi|326637606|gb|EGE38508.1| SNF2/helicase domain protein [Actinomyces viscosus C505]
          Length = 1244

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 16/167 (9%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------F 88
                      +     K++ L   +    +     +V   F   L+ +++          
Sbjct: 1040 PATGRSGPGRRPSPSAKVEVLVEHLGPILSEGHRALVFSQFTRYLSGVREHLEATGVRTA 1099

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +       I  +  G+  +      + G GL L    + +     WW+ +  +Q +
Sbjct: 1100 YMDGSTPDRQKVIDAFRAGEADVFLISLKAGGFGLTLTE-ADYVFLLDPWWNPQAEEQAV 1158

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R       + G  + V VY L++ +TI+E V+     K+ +   ++
Sbjct: 1159 DR-----THRIGQDKPVMVYRLVSADTIEEKVMALKEKKAELFARVV 1200


>gi|321461806|gb|EFX72834.1| hypothetical protein DAPPUDRAFT_215757 [Daphnia pulex]
          Length = 1614

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 42/233 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  +L N    +   +     H    
Sbjct: 963  LYRHMQSKGVMLTDGSEKDKKGKGGAKALMNTIMQLRKLCNHPFMFQHIEEAYCEHMNVP 1022

Query: 53   ------------DEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++       +  ++             
Sbjct: 1023 GGLVSGPDLYRTSGKFELLDRILPKLKHLNHRVLLFCQMTQLMTIMEDYLNWKSFKYLRL 1082

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  D     ++ +N+             + G GLNLQ   + ++ F   W+  +   
Sbjct: 1083 DGTTKADDRGDLLKRFNDKSSDYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1138

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G    V V  L+   +++E +L   R K  +   ++ A K
Sbjct: 1139 --DLQAQDRAHRIGQTNEVRVLRLMTVGSVEERILAAARYKLNMDQKVIQAGK 1189


>gi|219121950|ref|XP_002181319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407305|gb|EEC47242.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1431

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 76/220 (34%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVHD 53
           K Y          +QG +       +  ++  + A     +                 + 
Sbjct: 571 KLYRDILIRDIDAVQGTSGSRTAILNIVMQLRKCAGHPYLFPGTEDRSLPPLGEHLVENC 630

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTI 101
            K+  L+ ++++ +     +++                             + ++    I
Sbjct: 631 GKMVVLDKLLKRLHERGHRVLLFTQMTRVLDIMEDYLVMRRFPYCRIDGNTSYEQREEYI 690

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G G+NLQ   ++++ +   W+ +      +     R  + 
Sbjct: 691 DAYNAPNSEKFIFLLSTRAGGLGINLQT-ADVVILYDSDWNPQA-----DLQAQDRAHRI 744

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G KRAV V+ L+ ++T++E +++R + K  +  +++   +
Sbjct: 745 GQKRAVQVFRLVTEHTVEEKIVERAQQKLKLDAMVVQQGR 784


>gi|195333840|ref|XP_002033594.1| GM21414 [Drosophila sechellia]
 gi|194125564|gb|EDW47607.1| GM21414 [Drosophila sechellia]
          Length = 1027

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       L      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSAKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|195591505|ref|XP_002085481.1| GD14801 [Drosophila simulans]
 gi|194197490|gb|EDX11066.1| GD14801 [Drosophila simulans]
          Length = 893

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           K Y     + +  L  +      +  +  +   +  N    +        +         
Sbjct: 521 KFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEAPISPSGIYEMN 580

Query: 53  -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L  ++++   +   +++       L  L+                    
Sbjct: 581 SLTKASGKLDLLSKMLKQLKKDNHRVLLFSQMTKMLNILEHFLEGEGYQYDRIDGAIRGD 640

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N+      +      + G G+NL    + ++ F   W+        +    
Sbjct: 641 LRQKAIDRFNDPGSEQFVFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDVQAF 694

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G K+ V +Y  +  N+++E ++Q  + K  +  L++
Sbjct: 695 SRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKRKMMLTHLVV 736


>gi|241602475|ref|XP_002405194.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
 gi|215500578|gb|EEC10072.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
          Length = 680

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 53/223 (23%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEK-------------------------------HWK 49
           +A +  +  +   +L N                                           
Sbjct: 368 DANHHLACILALRKLCNHPSLVTPRHMSLWGCFRSSQDLLPTKSQKQFSLDMSKLAAESL 427

Query: 50  EVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
           E    K+K     L  + + +    I+V  +F   L  +Q+                +  
Sbjct: 428 EASSGKLKVLAAMLASLWDSSPREKIVVVSNFTRMLNVVQELCACKGYTFVRLDGSTSST 487

Query: 96  KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    ++ +N       +      + G GLNL  G + +V + + W+        +   +
Sbjct: 488 QRLEIVERFNSAHSDCFVFLLSCKAGGVGLNL-IGASRIVLYDVDWNPAN-----DLQAM 541

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G  R V+VY L+   T++E + QR   K  +   +L 
Sbjct: 542 ARVWRDGQGRHVYVYRLVTTGTVEEKIYQRQVMKLDLSRTVLE 584


>gi|118083490|ref|XP_416560.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 885

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 71/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDE 54
           K Y     +     +G         +  ++  +       ++       E          
Sbjct: 278 KYYKAILTKDLDAFEGGTGRKVMLQNVLIQLRKCVAHPYLFNGVEPEPFEIGDHIVEASG 337

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++         +++       L  LQ                   ++    I+
Sbjct: 338 KLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIK 397

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +   + R  + G  
Sbjct: 398 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFTDSDFNPQN-----DLQAIARAHRIGQH 451

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 452 KPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 486


>gi|315048045|ref|XP_003173397.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
 gi|311341364|gb|EFR00567.1| ISWI chromatin-remodeling complex ATPase ISW1 [Arthroderma gypseum
           CBS 118893]
          Length = 767

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKI 56
            + +R     L  + I +    +  ++   + N  + +                    K+
Sbjct: 466 DEIERAKTMKLAKKEISSKKLQNPVMQARLVCNSPLNFYWPWDEDSSGVDSTLVTSSGKM 525

Query: 57  KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
             L+ ++    +    +++   F               +                  I  
Sbjct: 526 LLLDRLVPCLISKGHKVLIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINA 585

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 586 FNSDPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 639

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + TI++ +L+R  +K  ++ L++   K +++
Sbjct: 640 KPVIVYRLATRGTIEQTLLERAGSKRRLEKLVIQKGKFKSL 680


>gi|281206043|gb|EFA80232.1| DEAD-box RNA helicase [Polysphondylium pallidum PN500]
          Length = 1657

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
            D  ++ L+ ++E    +  ++   + S L  ++    +               +   +I+
Sbjct: 1492 DALMQELDKVMENEPDSKSLIFSQWTSMLDLIEIPLQKKGIAFVRLDGKVPQKQREISIR 1551

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  E  I +      + G GLNL    + +     WW+    +Q I+R+      + G 
Sbjct: 1552 RFKEEPNIKVFLISMKAGGLGLNL-VVASHVFLLDPWWNPATEEQAIDRV-----YRIGQ 1605

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + VFV   + +++I+E +L+  + K  +    L  +KK+ 
Sbjct: 1606 NKNVFVTRFVIKDSIEERILKLQQNKKNLAQDTLQ-MKKQI 1645



 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 1    MKQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            ++ Y +     +++     Q   +     +     ++  Q+ +           K    E
Sbjct: 1167 LEIYQELWNASKKKFINFFQSGTLLKNYAHILELLLRLRQICDHPYLVRNILKDKLFSFE 1226

Query: 55   KIKALEVI 62
            +    E +
Sbjct: 1227 EQDVSEEL 1234


>gi|77404417|ref|NP_796198.1| chromodomain-helicase-DNA-binding protein 9 [Mus musculus]
 gi|76782010|gb|AAZ73184.2| ciprofibrate-bound protein PRIC320 [Mus musculus]
          Length = 2869

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|62530242|gb|AAX85378.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1927

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 952  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1011

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1012 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1071

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1072 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1125

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1126 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1167


>gi|212530546|ref|XP_002145430.1| RSC complex subunit (Sth1), putative [Penicillium marneffei ATCC
            18224]
 gi|210074828|gb|EEA28915.1| RSC complex subunit (Sth1), putative [Penicillium marneffei ATCC
            18224]
          Length = 1430

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G  I     ++  ++  +L N    ++  +            
Sbjct: 806  KLYKQLLTHNKMVVSDGKGGKIGMRGLSNMLMQMRKLCNHPFVFEPVEDQMNPGRGTNDL 865

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ ++ K       +++ +     +  ++                   D 
Sbjct: 866  IWRTAGKFELLDRVLPKFKATGHRVLLFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 925

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 926  RSELLKLFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 979

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L R + K  +   ++ A K
Sbjct: 980  RAHRIGQKNEVRILRLITSNSVEEKILGRAQFKLDMDGKVIQAGK 1024


>gi|25412286|pir||B84645 hypothetical protein At2g25170 [imported] - Arabidopsis thaliana
          Length = 1359

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  ++  ++       +  +      +E       
Sbjct: 533 EYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLE 592

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
                ++    ++  K     +++   F   L  L+      +   +             
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQI 652

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 653 RIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 706

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 707 RLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNIN 753


>gi|320591351|gb|EFX03790.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1138

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +      G+        +  ++  +  N    +               
Sbjct: 421 VKWYQKILEKDIDAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 480

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKD 97
             +  K+  L+ ++       + +++    +  L                       +  
Sbjct: 481 VYNAGKMAVLDRLLKRMSEQGSRVLIFSQMSRLLDILEDYCVFRGYQYCRIDGSTAHEDR 540

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 541 IAAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDR 594

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V VY  +  N I+E VL+R   K  +  L++   +
Sbjct: 595 AHRIGQTKQVVVYRFVTDNAIEEKVLERAAQKLRLDQLVIQQGR 638


>gi|256085322|ref|XP_002578871.1| helicase [Schistosoma mansoni]
 gi|238664258|emb|CAZ35109.1| helicase swr1, putative [Schistosoma mansoni]
          Length = 1272

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            N    +       E    K+  L+ ++ +  +N   +++       +  L++     +  
Sbjct: 936  NQYAMWKLPNLLYEDDSGKLTTLDYLLSELKSNGHRVLIYSQMTRMIDILEEFMLYRKHA 995

Query: 95   D-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                        +     Q     +  +      + G G+NL    + ++F+   W+   
Sbjct: 996  YLRLDGSSRLSDRRDMVAQWQTNPRWFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT- 1053

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI +NT++  +L+R   K  +Q +++ +
Sbjct: 1054 ----VDQQAMDRAHRLGQTKPVTVYRLICKNTVEGRMLRRAEEKRAMQQMVIQS 1103


>gi|167517042|ref|XP_001742862.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779486|gb|EDQ93100.1| predicted protein [Monosiga brevicollis MX1]
          Length = 470

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEVIIE--KAN 67
           E+    +  +  ++  ++ N             V           K++ L+ ++   KA 
Sbjct: 275 EDKALSSLLNMVMQFRKICNHPNLIARRPVRSPVTHAQLFVADCAKLQVLDDMLRRLKAG 334

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116
              +++       +  L++                +  ++        +   I       
Sbjct: 335 GHRVLIYSQMTKMIDLLEEFLTHRQYKYVRLDGSSKISERRDMVADFQSRDDIFAFILST 394

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++F+   W+       +++  + R  + G  R V VY LI +N++
Sbjct: 395 RAGGIGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLGQTRTVTVYRLITRNSV 448

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L R + KS +  +++  
Sbjct: 449 EERILARAQEKSKVHQMVIQG 469


>gi|62530240|gb|AAX85377.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1924

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 949  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1008

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1009 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1068

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1069 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1122

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1123 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1164


>gi|293368877|ref|ZP_06615480.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292636026|gb|EFF54515.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 946

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 4   YHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y + +  L   L            F+  +  ++  QL+        +         +I  
Sbjct: 730 YEQEKNSLRNILLQHPQSTDRLHSFSVLNGILRLRQLSCHPQLILPDYTGTSGKTAQIIE 789

Query: 59  LEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
               + ++    +++   F   L            +     G T ++        ++  +
Sbjct: 790 TFDTL-QSEGHKVLIFSSFVRHLEVLAEAFHERGWKYTLLTGSTNNRPSEIAYFTDQKDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G GLNL    + +     WW+        E   + R  + G  + V  Y 
Sbjct: 849 QAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAYR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I QN+I+E +L     K  + +  +
Sbjct: 903 FITQNSIEEKILHLQDEKRKLAETFV 928


>gi|195058262|ref|XP_001995418.1| GH23147 [Drosophila grimshawi]
 gi|193899624|gb|EDV98490.1| GH23147 [Drosophila grimshawi]
          Length = 1025

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYYDEEKH--------W 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +D  +          
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDSH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N              + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEFNMDNSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|159126264|gb|EDP51380.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus A1163]
          Length = 1406

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            + Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 783  RLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 842

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 843  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 902

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 903  RSDLLKLFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1001


>gi|62530236|gb|AAX85375.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
 gi|62530238|gb|AAX85376.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
            norvegicus]
          Length = 1925

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 950  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1009

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1010 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1069

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1070 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1123

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1124 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1165


>gi|322708209|gb|EFY99786.1| Putative DNA helicase ino-80 [Metarhizium anisopliae ARSEF 23]
          Length = 1927

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ K       +++ +     +  +++                    +  
Sbjct: 1650 DSGKLAKLDELLFKLKNEGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDRRD 1709

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1710 TVHDFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1763

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  + V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1764 LGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1802


>gi|324500144|gb|ADY40077.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1875

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 79/222 (35%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y +L      + N      ++  +  N A       H++E          
Sbjct: 745 QYYKWILTKNYKELSKGVKGSINGFVNLIMELKKCCNHASLVRAYDHYEENAQARLQQLM 804

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ + +     +++       L  +Q+     R   +            
Sbjct: 805 KSSGKLILLDKLLCRLHETGHRVLIFSQMVMMLDIVQEYLQLRRFPSQRLDGSMRADLRK 864

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +   ++R 
Sbjct: 865 AALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRA 918

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 919 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLVIQRM 960


>gi|156051590|ref|XP_001591756.1| hypothetical protein SS1G_07202 [Sclerotinia sclerotiorum 1980]
 gi|154704980|gb|EDO04719.1| hypothetical protein SS1G_07202 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1805

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 56/230 (24%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-----------------EVHDEKIKAL 59
            G+     +         +L N      +E H +                  +H  K+ AL
Sbjct: 1498 GDKEAKQHIFQALQYMRKLCNSPALVMKEGHKQYEDTQRLLAKQGTSLRDPIHAPKLTAL 1557

Query: 60   EVIIEKA-------------------NAAPIIVAYHFNSDLARLQK-------------A 87
              ++                      +    +V       L  +Q               
Sbjct: 1558 RDLLVDCGIGTEPSSENEITTETSFVSPHRALVFCQMKEMLDMVQNDVLKKMLPSVQFLR 1617

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +K    + ++N +    +L    +  G GLNL  G + ++F    W+ ++   
Sbjct: 1618 MDGSVDANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQK--- 1673

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +   + R  + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1674 --DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVVN 1721


>gi|313233227|emb|CBY24342.1| unnamed protein product [Oikopleura dioica]
          Length = 1202

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 39/231 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------- 52
           Y KF +E    L  E ++  +S        +L N         +  E             
Sbjct: 429 YIKFVKEKKRLLDTEGMQGPSSLQAITALKKLCNHPALVYPLINNPEYKFLQPYYKDFKP 488

Query: 53  -------DEKIKALEVII---EKANAAPIIVAYHFNSDLA----------RLQKAFPQGR 92
                    K   L++I+   +       ++  ++   L                     
Sbjct: 489 DKFDPTLSGKFLLLDLILAITKMHTDDKFVLVSNYTQTLDTCQELCKLRGYGYVRLDGTM 548

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            + K    + E+N  +    +      + G GLNL  G N L+ F   W+        + 
Sbjct: 549 AIKKRSKLVAEFNSPESSDYVFMLSSKAGGCGLNL-IGANRLIMFDPDWNPAN-----DD 602

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + R  + G K+  F+Y L+A  TI+E +LQR   K  +  ++++A + +
Sbjct: 603 QAMARVWRDGQKKRCFIYRLVAAGTIEEKMLQRQLHKKALSGVVVDAQEAD 653


>gi|156401565|ref|XP_001639361.1| predicted protein [Nematostella vectensis]
 gi|156226489|gb|EDO47298.1| predicted protein [Nematostella vectensis]
          Length = 1360

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 39/233 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVY----------------Y 42
           K Y       +  L        N     +  ++  +  N                     
Sbjct: 477 KFYRAILERNFAFLAKGTSSTANVPNLMNTMMELRKCCNHPFLITGAEEKILQEYGREHV 536

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--- 97
           D   H       K+  +  ++ K       ++V       L  L+      +   +    
Sbjct: 537 DRHTHAMIEASGKLVLIHKLLPKLKLGGHKVLVFSQMVRCLDILEDYLVHMKYPYERIDG 596

Query: 98  -------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  +++      +      + G G+NL    + ++ F   W+ +      
Sbjct: 597 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN----- 650

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +     R  + G  R+V VY LI +N+ +  +  R   K  +   +L ++  +
Sbjct: 651 DLQAQARCHRIGQSRSVKVYRLITRNSYEREMFDRASMKLGLDKAVLQSMNTK 703


>gi|295674887|ref|XP_002797989.1| SNF2 family helicase/ATPase PasG [Paracoccidioides brasiliensis
           Pb01]
 gi|226280639|gb|EEH36205.1| SNF2 family helicase/ATPase PasG [Paracoccidioides brasiliensis
           Pb01]
          Length = 857

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKI 56
            K +R     L  + I +    +  ++     N    +                    K+
Sbjct: 551 DKIERAKTAQLARKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSSVDSSLITSSGKM 610

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQE 103
             L+ +I    +    I++   F + L                      +       I  
Sbjct: 611 LLLDRLIPCLMSKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQVNRQAQIAA 670

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 671 FNTDPSYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 724

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 725 KPVIVYRLATRGTVEQTLLEKADSKRKLEKLVIQKGKFKSL 765


>gi|168025390|ref|XP_001765217.1| SNF2 superfamily chromatin remodeling protein [Physcomitrella patens
            subsp. patens]
 gi|162683536|gb|EDQ69945.1| SNF2 superfamily chromatin remodeling protein [Physcomitrella patens
            subsp. patens]
          Length = 2041

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 53/226 (23%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKH-----------------WKEVHDEKIKALEVIIE 64
            + +         +L +  +   E++                   +  H  K++AL  I+E
Sbjct: 1745 STHVFQALQYLRKLCSHPLLVLEDERQAARHVDAIAQSGAKDLHELHHAPKLQALRDILE 1804

Query: 65   KA----------------NAAPIIVAYHFNSDLARLQKAFPQGRTL-------------D 95
            +                     +++     + L  ++K   Q                 D
Sbjct: 1805 ECGIGVPAAAESSASPEGGHHRVLIFAQLKNFLDIIEKDLFQTHMKGVTYLRLDGSVESD 1864

Query: 96   KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K    ++ +N +  I +L       G GLNL    + +VF    W+        +   + 
Sbjct: 1865 KRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTA-ADTVVFMEHDWNPMR-----DLQAMD 1918

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R  + G KR V V+ LI + T++E ++   R K ++ + ++NA   
Sbjct: 1919 RAHRLGQKRVVNVHRLIMRGTLEEKIMSLQRFKISVANTVINAENA 1964


>gi|118096298|ref|XP_414088.2| PREDICTED: similar to chromatin remodeling factor CHROM1 [Gallus
            gallus]
          Length = 2891

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1105 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNP 1164

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1165 TAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1224

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1225 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1281

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 1282 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSV 1338


>gi|110738692|dbj|BAF01271.1| putative chromodomain-helicase-DNA-binding protein [Arabidopsis
           thaliana]
          Length = 966

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 30/227 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  ++  ++       +  +      +E       
Sbjct: 115 EYYKAIFTRNYQVLTKKGGAQISLNNIMMELRRVCCHPYMLEGVEPVIHDANEAFKQLLE 174

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
                ++    ++  K     +++   F   L  L+      +   +             
Sbjct: 175 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQI 234

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 235 RIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 288

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + I+
Sbjct: 289 RLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNIN 335


>gi|302408325|ref|XP_003001997.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
 gi|261358918|gb|EEY21346.1| DNA repair and recombination protein RAD54 [Verticillium albo-atrum
           VaMs.102]
          Length = 857

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 45/213 (21%)

Query: 26  ASKTVKCLQLANGAVYYD---------------------------EEKHWKEVHDEKIKA 58
                   +L N     +                           E K W     + +  
Sbjct: 562 LKAINILKKLCNHPDLLNLNDDLPGSENCWPDDYVPKDARGHRNREVKPWYSGKMQVLDR 621

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK 108
           +   I +     I++  ++   L   ++                 ++K    + ++N+  
Sbjct: 622 MLARIRQDTNDKIVLISNYTQTLDIFERLCRSRAYGCLRLDGTMNVNKRQKLVDKFNDPA 681

Query: 109 I--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL  G N LV F   W+    Q       + R  + G K+  F
Sbjct: 682 GEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCF 735

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 736 VYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 768


>gi|156548320|ref|XP_001602898.1| PREDICTED: similar to chromodomain helicase DNA binding protein
            [Nasonia vitripennis]
          Length = 4629

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 40/232 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      A   N  +  ++  +        +  +   ++        
Sbjct: 2121 KYYRGILERNFSFLAKGTTSANIPNLMNTMMELRKCCIHPFLLNGAEDQIQLDYKHEKED 2180

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                         K+  ++ ++ K  A+   ++V       L  L+      +   +   
Sbjct: 2181 SESYYQALINSSGKMVLIDKLLPKLKASGHRVLVFSQMVKCLDLLEDYLVYKKYPYERID 2240

Query: 98   --------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       I  +++      +      + G G+NL    + ++ +   W+ +     
Sbjct: 2241 GRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN---- 2295

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +     R  + G ++ V VY L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2296 -DLQAQARCHRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2346


>gi|94707512|sp|Q8BYH8|CHD9_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 9;
            Short=CHD-9; AltName: Full=ATP-dependent helicase CHD9;
            AltName: Full=PPAR-alpha-interacting complex protein 320
            kDa; AltName: Full=Peroxisomal proliferator-activated
            receptor A-interacting complex 320 kDa protein
          Length = 2885

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|70998556|ref|XP_754000.1| RSC complex subunit (Sth1) [Aspergillus fumigatus Af293]
 gi|66851636|gb|EAL91962.1| RSC complex subunit (Sth1), putative [Aspergillus fumigatus Af293]
          Length = 1406

 Score = 99.1 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            + Y +     + +  D +G        ++  ++  +L N    ++  +            
Sbjct: 783  RLYKQLVTHNKMVVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 842

Query: 55   ------KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                  K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 843  IWRTAGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 902

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 903  RSDLLKLFNAPGSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 957  RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 1001


>gi|299755713|ref|XP_001828834.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
 gi|298411348|gb|EAU92841.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
          Length = 1625

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++++       ++V +     +  +++     +              +  
Sbjct: 1352 DSAKLARLDSLLQELKAGDHRVLVYFQMTRMMDLMEEYLIYRQYKYLRLDGSSKLEDRRD 1411

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              I       I +      + G G+NL    + ++F+   W+        +   + R  +
Sbjct: 1412 MVIDWQTRPDIFVFLLSTRAGGLGINLTA-ADTVIFYDHDWNPSN-----DAQAMDRAHR 1465

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             G  R V VY LI + TIDE ++Q  R K  +QD+++ 
Sbjct: 1466 LGQTRQVTVYRLITKGTIDERIIQLARVKKDVQDIVVG 1503


>gi|73981363|ref|XP_533028.2| PREDICTED: similar to chromodomain helicase DNA binding protein
           1-like [Canis familiaris]
          Length = 972

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 70/206 (33%), Gaps = 17/206 (8%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y     +     + E  +     +   +  +  +    ++ E     +    +     
Sbjct: 373 KYYKAILMKDLDAFESEMAKKVKLQNVLSQLRKCVDHPYLFEGETVPFFLTLLFMNIFVA 432

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL 111
            I  A    +++       L  LQ                   ++    I+ + +  + +
Sbjct: 433 NII-AQGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPVFV 491

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    + ++F    ++ +      +     R  + G  ++V V  LI
Sbjct: 492 FLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQNKSVKVIRLI 545

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++T++E+V ++  +K  + + ++  
Sbjct: 546 GRDTVEEIVYRKAASKLQLTNAIIEG 571


>gi|326932279|ref|XP_003212247.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like, partial
            [Meleagris gallopavo]
          Length = 1949

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               + +
Sbjct: 933  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGN 992

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 993  SLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1052

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1053 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1106

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1107 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1148


>gi|322707957|gb|EFY99534.1| recombinational repair protein [Metarhizium anisopliae ARSEF 23]
          Length = 807

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVYYD-----------------------EEKHWKEVHDEKIKALEVI 62
                   +L N     +                        ++  +  +  K+  L+ +
Sbjct: 513 LKAINILKKLCNHPDLLNLSDDLPGSECCFPPEYIPKEARGRDRDVRPEYSGKMMVLDRM 572

Query: 63  I---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
           +    +     I++  ++ S L   ++                 ++K    +  +N+   
Sbjct: 573 LARIRQDTNDKIVLISNYTSTLDLFERLCRSREYGCLRLDGTMNVNKRQKLVDRFNDPNG 632

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 633 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 686

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 687 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 718


>gi|327350928|gb|EGE79785.1| lymphocyte-specific helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 893

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIK 57
           K ++     L  + I +    +  ++     N    +         H          K+ 
Sbjct: 590 KIEKTKTAQLAKKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSHIDESLITSSGKML 649

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            L+ +I    +    I++   F + L                      +       IQ +
Sbjct: 650 LLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNCCRIDGAVSQVDRQAQIQAF 709

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N      +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 710 NTNQDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 763

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 764 PVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGKFKSL 803


>gi|116207742|ref|XP_001229680.1| hypothetical protein CHGG_03164 [Chaetomium globosum CBS 148.51]
 gi|88183761|gb|EAQ91229.1| hypothetical protein CHGG_03164 [Chaetomium globosum CBS 148.51]
          Length = 1852

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 59/249 (23%)

Query: 1    MKQYHKFQR---ELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWK------ 49
            +K +  F +   +   +  G+       +         +L N      +  H        
Sbjct: 1523 LKLFEDFTKREGQKLSEQAGKEDKEAKQHIFQALQYMRKLCNSPALVMKPGHRSYEDTQR 1582

Query: 50   -----------EVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDL 81
                         H  K+ AL  ++                         ++       L
Sbjct: 1583 FLAKQNTSLEDPAHAPKLTALRDLLVDCGIGTEGQDSSDPLYTPIKPHRALIFCQMKEML 1642

Query: 82   ARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q    Q                 ++    + ++N +    +L    +  G GLNL  
Sbjct: 1643 DMVQNTVLQKMLPTTQYLRLDGSVEANRRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT- 1701

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1702 GADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFK 1756

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1757 IDVASTVVN 1765


>gi|292498|gb|AAA80560.1| transcription activator [Homo sapiens]
          Length = 769

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|221487102|gb|EEE25348.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii GT1]
          Length = 2325

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 30/228 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKE--------- 50
            +K Y     + +  L  +     +S     ++  ++ N           ++         
Sbjct: 1218 LKFYRLILTKNFDLLAKKGGGNRSSLQNICMELKKVCNHPFLCQSPDEEEDAEEWRRLLV 1277

Query: 51   VHDEKI--KALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DP 98
                K+      +   K     +++       L    +    +G    +           
Sbjct: 1278 DGSAKMGLLDKLLKRLKEKGHRVLIFSQMVKMLNLLAEFLKMRGYKHQRLDGTMAKEVRR 1337

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 1338 KAMEHFNAKNSEDFCFLLSTKAGGLGINLTS-ADTVIIFDSDWNPQN-----DLQAEARA 1391

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + G  R V +Y L+ +++I++ +L+R + K  +  L++  L +  + 
Sbjct: 1392 HRIGQTRTVQIYRLVTKDSIEQTILERAKAKMVLDTLVVQGLNQRNVD 1439


>gi|149248292|ref|XP_001528533.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448487|gb|EDK42875.1| chromatin remodelling complex ATPase chain ISW1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 917

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 38/225 (16%)

Query: 7   FQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYDEEK--------HW 48
            QR LY  +  ++I+A N A+K           ++  +  N    +D  +          
Sbjct: 265 MQRNLYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFDGVEPGPPFTTDEH 324

Query: 49  KEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
              + +K+  L+ ++   KA  + +++    +  L  L+                     
Sbjct: 325 LVFNAQKMIILDKLLKKFKAEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHVD 384

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+N+      +      + G G+NL    +I++ F   W+ +      +   + 
Sbjct: 385 RINAIDEYNKPGSEKFVFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAMD 438

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  + V V+  I +N I+E VL+R   K  +  L++   +
Sbjct: 439 RAHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQQGR 483


>gi|84043448|ref|XP_951514.1| transcription activator [Trypanosoma brucei TREU927]
 gi|33348313|gb|AAQ15639.1| transcription activator, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|62359085|gb|AAX79532.1| transcription activator, putative [Trypanosoma brucei]
 gi|261326368|emb|CBH09327.1| transcription activator, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1160

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 40/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDE--------EKHW 48
           K QR  Y  +  ++ E  N  S           +   ++ N     D             
Sbjct: 415 KVQRRWYMQVLAKDAEVLNKGSGGSSAFLTNTLMSLRKVINHPYMMDGGEEGPPFITDER 474

Query: 49  KEVHDEKIKALEVIIE-----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              +  K+  L+ ++      +     +++   F S L  L+                 +
Sbjct: 475 IVKYSGKMLLLDKLLHRLRRDEKEGHKVLIFSQFTSMLDILEDYCSMRGFKVCRIDGSTS 534

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  +N  K    +      + G G+NLQ   N ++ +   W+ +     ++  
Sbjct: 535 GYDRDSQMAAFNAPKSDYFIFLLSTRAGGLGINLQA-ANNVIIYDSDWNPQ-----MDLQ 588

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              R  + G KR V VY  +   T++E +  R   K  +  +++   + 
Sbjct: 589 AQDRAHRIGQKRVVRVYRFVTDGTVEERIYHRALKKLYLDAMVVQQGRA 637


>gi|71020091|ref|XP_760276.1| hypothetical protein UM04129.1 [Ustilago maydis 521]
 gi|46099924|gb|EAK85157.1| hypothetical protein UM04129.1 [Ustilago maydis 521]
          Length = 983

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 40/225 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           K Y    RE       + I+  +  +  ++  ++ N    +D     +            
Sbjct: 658 KLYS--VREA-----QKQIKNMHLDNTVMQARKICNHPFLFDWPVDKESGTLVVNKDLIN 710

Query: 53  -DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
              K+  L  ++++       +++   F + L  ++    +               D+  
Sbjct: 711 ASGKMLMLNRLLDELFHRGHKVLIFSQFTTMLDIIEDWANEFKRLRTCRIDGTTPQDERR 770

Query: 99  CTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++ +NE K      L      + G G+NL    + ++F+   W+ +     ++     
Sbjct: 771 AQMKSFNEDKGRDACNLFLLSTRAGGLGINLVA-ADTVIFYDSDWNPQ-----MDLQAQD 824

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  R   ++ L++ +T++E +L+R   K  ++ L++   K
Sbjct: 825 RVHRIGQTRPCLIFRLVSASTVEERILRRAGNKRKLEALVIQQGK 869


>gi|255086381|ref|XP_002509157.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524435|gb|ACO70415.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1814

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 46/221 (20%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--------EVHDEKIKALEVII---- 63
            +  +  A +         +L +      E    K        E    K  AL+ I+    
Sbjct: 1517 ESASGAATHVFQALQYLRKLCSHPRLVTEGDGKKGKKAKPTAETMSPKFMALKQILLDCG 1576

Query: 64   --------------EKANAAPIIVAYHFNSDLARLQKAFPQG-------------RTLDK 96
                          ++++   +++     S L  ++                        
Sbjct: 1577 IGEDPLAEKDPDQKQESSGHRVLIFSQLKSLLDLVEDELFGHLLKGVSWLRLDGSVAPTA 1636

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++++N +  I +L       G GLNL    + +VF    W+ ++     +   + R
Sbjct: 1637 RFDVVRKFNADPSIDVLLLTTHVGGLGLNLTS-ADTVVFLEHDWNPQK-----DLQAMDR 1690

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G KR V V+ L+ + T++E ++   R K  + + ++N
Sbjct: 1691 AHRLGQKRTVNVFRLLTKGTLEEKIMGLQRFKLDVANAVVN 1731


>gi|211853152|gb|AAI68553.1| chd9 protein [Xenopus (Silurana) tropicalis]
          Length = 2753

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 974  KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRETYNQ 1033

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1034 MAADFYLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLMHKRYLYER 1093

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1094 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1150

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 1151 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSV 1207


>gi|293340184|ref|XP_001079343.2| PREDICTED: chromodomain helicase DNA binding protein 3 [Rattus
            norvegicus]
          Length = 2046

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1071 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1130

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1131 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1190

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1191 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1244

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1245 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1286


>gi|237831501|ref|XP_002365048.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii ME49]
 gi|211962712|gb|EEA97907.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii ME49]
 gi|221506789|gb|EEE32406.1| chromodomain helicase DNA binding protein, putative [Toxoplasma
            gondii VEG]
          Length = 2279

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 30/228 (13%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKE--------- 50
            +K Y     + +  L  +     +S     ++  ++ N           ++         
Sbjct: 1218 LKFYRLILTKNFDLLAKKGGGNRSSLQNICMELKKVCNHPFLCQSPDEEEDAEEWRRLLV 1277

Query: 51   VHDEKI--KALEVIIEKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DP 98
                K+      +   K     +++       L    +    +G    +           
Sbjct: 1278 DGSAKMGLLDKLLKRLKEKGHRVLIFSQMVKMLNLLAEFLKMRGYKHQRLDGTMAKEVRR 1337

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 1338 KAMEHFNAKNSEDFCFLLSTKAGGLGINLTS-ADTVIIFDSDWNPQN-----DLQAEARA 1391

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + G  R V +Y L+ +++I++ +L+R + K  +  L++  L +  + 
Sbjct: 1392 HRIGQTRTVQIYRLVTKDSIEQTILERAKAKMVLDTLVVQGLNQRNVD 1439


>gi|123241655|emb|CAI35987.2| chromodomain helicase DNA binding protein 3 [Mus musculus]
          Length = 1885

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 952  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1011

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1012 ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1071

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1072 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1125

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1126 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1167


>gi|149053041|gb|EDM04858.1| chromodomain helicase DNA binding protein 3 [Rattus norvegicus]
          Length = 1827

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 817  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 876

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 877  ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 936

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 937  LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 990

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 991  SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1032


>gi|148678548|gb|EDL10495.1| mCG140617 [Mus musculus]
          Length = 1826

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 816  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 875

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 876  ALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 935

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 936  LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 989

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 990  SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1031


>gi|148679122|gb|EDL11069.1| mCG141427 [Mus musculus]
          Length = 2699

 Score = 99.1 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|225682464|gb|EEH20748.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Paracoccidioides brasiliensis Pb03]
          Length = 1120

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 429 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 488

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 489 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 548

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 549 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 602

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 603 AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 648


>gi|242818381|ref|XP_002487106.1| RSC complex subunit (Sth1), putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713571|gb|EED12995.1| RSC complex subunit (Sth1), putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1420

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 33/225 (14%)

Query: 2    KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
            K Y +     + +  D +G  I     ++  ++  +L N    ++  +            
Sbjct: 799  KLYKQLLTHNKMVVSDGKGGKIGMRGLSNMLMQMRKLCNHPFVFEPVEDQMNPGRGTNDL 858

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ ++ K       +++ +     +  ++                   D 
Sbjct: 859  IWRTAGKFELLDRVLPKFKATGHRVLLFFQMTQIMNIMEDFLRFRGLKYLRLDGSTKSDD 918

Query: 97   DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ +   W+  +     +     
Sbjct: 919  RSELLKLFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIYDSDWNPHQ-----DLQAQD 972

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI  N+++E +L R + K  +   ++ A K
Sbjct: 973  RAHRIGQKNEVRILRLITSNSVEEKILGRAQFKLDMDGKVIQAGK 1017


>gi|255932145|ref|XP_002557629.1| Pc12g07960 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582248|emb|CAP80423.1| Pc12g07960 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 937

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
            Y++E    E+   KI+ L  I+  +A     IV   F S L +++              
Sbjct: 691 IYNDEGENGELPSTKIRHLMRILNREAPDFKFIVFSVFTSMLDKIEPFLKTANIGFARYD 750

Query: 94  -----LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 751 GGMANNHREASLEKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 804

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           E   + R  +      V +Y ++ + T++E ++     K  + +  +  
Sbjct: 805 EEQAIDRVHRLNQTIDVKIYKMVIKGTVEERIVALQDRKRELANATIEG 853



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 4   YHKFQRE----LYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + ++     L   + G  ++   +    ++  Q  N     
Sbjct: 564 YKRLEQRTDNSLEKMMGGAKVDYAGALVLLLRLRQSCNHPDLV 606


>gi|108708155|gb|ABF95950.1| transcriptional activator, putative, expressed [Oryza sativa Japonica
            Group]
          Length = 1457

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
            +     + +         K++ L++++ +  A    +++       L  L+         
Sbjct: 1122 SSPPMSNFDPAKMLTDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFK 1181

Query: 91   -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       D+        N   I +      + G G+NL    + ++F+ + W+  +
Sbjct: 1182 YFRLDGSSAISDRRDMVRDFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYEIDWNPTQ 1240

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q       + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1241 DQ-----QAMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 1287


>gi|308499699|ref|XP_003112035.1| CRE-RAD-54 protein [Caenorhabditis remanei]
 gi|308268516|gb|EFP12469.1| CRE-RAD-54 protein [Caenorhabditis remanei]
          Length = 1096

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 47/234 (20%)

Query: 3   QYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------------- 44
            Y+K    +++     + +   A ++ S      +L N      E               
Sbjct: 747 LYNKLIECEKQNRIVEKDKGATA-SALSFITHLKKLCNHPYLVYEEFQKPDNRFRNKCLP 805

Query: 45  -------EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF------ 88
                   K +      K+K L+ I+    K      ++  ++   + +           
Sbjct: 806 VFPEAFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMALCKLRGYD 865

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   ++ +    +  +N+    I        + G GLNL  G N LV F   W+  
Sbjct: 866 FVRLDGSMSIKQRSKIVDTFNDPSSTIFCFLLSSKAGGCGLNL-IGANRLVMFDPDWNPA 924

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   + R  + G K+  F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 925 N-----DDQAMARVWRDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVS 973


>gi|219518574|gb|AAI45220.1| Chd9 protein [Mus musculus]
          Length = 2884

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1107 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1166

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1167 SASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1226

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1227 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1283

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1284 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1340


>gi|196000388|ref|XP_002110062.1| hypothetical protein TRIADDRAFT_53632 [Trichoplax adhaerens]
 gi|190588186|gb|EDV28228.1| hypothetical protein TRIADDRAFT_53632 [Trichoplax adhaerens]
          Length = 1207

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 38/228 (16%)

Query: 3   QYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---------------EK 46
            Y +  + +    +        ++    +   ++ N     +                  
Sbjct: 676 VYQQYLKSDEVAGIIDG---RNHAFGGLITLRKICNHPHLTNISVPRVAKVNVDSEIIRS 732

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
               +   K+ AL+ ++   + N   +++             F                +
Sbjct: 733 DGHWLLSGKMIALKTLLSLWRENKHRVLLFTQTRQMANILEKFVKSENYPYMRMDGTTNI 792

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++ +N    I +        G GLNL  G + +V F   W+             
Sbjct: 793 SSRQSLVKLFNRNNAIFIFILTTRVGGLGLNLT-GADRVVIFDPDWNPSTDM-----QAR 846

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V +Y  +   TI+E +  R   K  + + +L   K+ 
Sbjct: 847 ERAWRVGQTKEVTIYRFLTSGTIEEKIYHRQVFKEFLTNRILKNPKQR 894


>gi|39977783|ref|XP_370279.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
 gi|206558153|sp|A4R227|INO80_MAGO7 RecName: Full=Putative DNA helicase INO80
 gi|145013701|gb|EDJ98342.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
          Length = 1944

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
            +  K+  L+ ++ K       +++ +     +  +++                +  D+  
Sbjct: 1657 NSGKLAKLDELLFKLKAGGHRVLLYFQMTRMIDLMEEYLTYRNWKYCRLDGSTKFEDRRD 1716

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                      I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1717 TVHDFQTNPSIFVFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1770

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1771 LGQTRQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1807


>gi|194391058|dbj|BAG60647.1| unnamed protein product [Homo sapiens]
          Length = 434

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 188 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 247

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 248 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 307

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 308 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRVGQN 361

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 362 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 396


>gi|325088122|gb|EGC41432.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus H88]
          Length = 1112

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 419 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 478

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 479 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 538

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 539 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 592

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 593 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 638


>gi|268536304|ref|XP_002633287.1| Hypothetical protein CBG06016 [Caenorhabditis briggsae]
          Length = 1369

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------- 54
             Y   +R    D    +  A +  +  +   +L N    +   +     H          
Sbjct: 821  IYRHMKRGYLLD-SKSSCGARSLMNTIIHLRKLCNHPFLFQNIEESCRSHWNVNFVSGVN 879

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       +++ +   + +   +                   D+
Sbjct: 880  LIRVAGKLELLDRILPKLKATGHRVLMFFQMTTMMTIFEDYLNFRQYTYLRLDGSTKPDE 939

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 940  RGELLKMFNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 993

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 994  RAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1038


>gi|328862601|gb|EGG11702.1| hypothetical protein MELLADRAFT_115234 [Melampsora larici-populina
           98AG31]
          Length = 1138

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 39/232 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYDEEK-------- 46
           + QR+ Y  +  ++I+A N  +             ++  +  N    +D  +        
Sbjct: 448 EMQRKWYKMILEKDIDAVNGVTGKKEGKTRLMNVVMQLRKCCNHPYLFDGAEPGPPFTTD 507

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
                +  K+  L+ ++   KA  + +++    +  L                       
Sbjct: 508 EHLVFNSGKMIILDKLLKAMKAKGSRVLIFSQMSRVLDILEDYCLFREYEYCRIDGSTQH 567

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    +I+V F   W+ +      +   
Sbjct: 568 EERIGAIDEYNKEGSSKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQA 621

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + R  + G K+ V+V+  + +N ++E VL+R   K  +  L++   +     
Sbjct: 622 MDRAHRIGQKKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVIQQGRANVAQ 673


>gi|309363526|emb|CAP26346.2| hypothetical protein CBG_06016 [Caenorhabditis briggsae AF16]
          Length = 1380

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------- 54
             Y   +R    D    +  A +  +  +   +L N    +   +     H          
Sbjct: 828  IYRHMKRGYLLD-SKSSCGARSLMNTIIHLRKLCNHPFLFQNIEESCRSHWNVNFVSGVN 886

Query: 55   ------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       +++ +   + +   +                   D+
Sbjct: 887  LIRVAGKLELLDRILPKLKATGHRVLMFFQMTTMMTIFEDYLNFRQYTYLRLDGSTKPDE 946

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 947  RGELLKMFNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 1000

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 1001 RAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1045


>gi|294056083|ref|YP_003549741.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293615416|gb|ADE55571.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 1133

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 24/212 (11%)

Query: 6    KFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + + E+        E      + +  ++  Q+                   K   +   +
Sbjct: 915  EVREEIAAAYDDQPEQQAGIVALAAILRLRQVCVSPELL---GKQLPEPAPKFVYMGDRL 971

Query: 64   EKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP- 110
            E+        +V   F            +             + +    ++ +  G  P 
Sbjct: 972  EELQAEGNAALVFSQFIGGLDQMEAIARERGVDYLRMDGRTPVGQRREIVRSFQSGDGPS 1031

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
              F    + G GLNL    N +     WW+       +E     R  + G  R+VFV  L
Sbjct: 1032 FFFISLKTGGVGLNLTR-ANYVFHLDPWWNPA-----VENQASDRAHRIGQTRSVFVQRL 1085

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            I Q++I+  +L+    K+ +   L++   + T
Sbjct: 1086 IMQHSIEARMLELKARKAELFRQLVDEPGRRT 1117


>gi|302816879|ref|XP_002990117.1| hypothetical protein SELMODRAFT_131060 [Selaginella moellendorffii]
 gi|300142130|gb|EFJ08834.1| hypothetical protein SELMODRAFT_131060 [Selaginella moellendorffii]
          Length = 700

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 72/216 (33%), Gaps = 31/216 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVH----- 52
           + Y     + Y  L+       +  +  ++  ++ N          E    + +H     
Sbjct: 257 EYYRALLTKNYQLLRQGTKSQQSMINIIMQLRKVCNHPYLIPGTEPESGTGEFLHEMRIK 316

Query: 53  -DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD 97
              K+  L  ++   K     +++       L  L+                    + + 
Sbjct: 317 ASAKLTLLHSMLGSLKKEGHRVLIFSQMTKLLDILEDYLTFEFGHDSYERVDGSVPVAER 376

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N+     +      SCG G+NL    + ++ +   ++        +   + R 
Sbjct: 377 QAAIRRYNKDTSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMNRA 430

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + + VY L+ + +++E +L   + K  ++ 
Sbjct: 431 HRIGQSKKLLVYRLLVRGSVEERILHLAKKKLELEQ 466


>gi|323508306|emb|CBQ68177.1| related to INO80-ATPase with chromatin remodeling and helicase
            activity [Sporisorium reilianum]
          Length = 1910

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
            V   K+  L++++ +  AN   +++ +     +  +++                +  D+ 
Sbjct: 1581 VDSSKMAKLDMLLRELKANGHRVLIYFQMTRMIDLMEEYLIYRQYKYLRLDGASKISDRR 1640

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + ++ +      + G G+NL    + ++F+   W+        +   + R  
Sbjct: 1641 DMVTDWQTKPELFIFLLSTRAGGLGINLTA-ADTVIFYDHDWNPSN-----DSQAMDRAH 1694

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  + V VY LI + TIDE +++  R K  +QD+++ 
Sbjct: 1695 RLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVVG 1733


>gi|58266666|ref|XP_570489.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110324|ref|XP_775989.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74685408|sp|Q5KHM0|INO80_CRYNE RecName: Full=Putative DNA helicase INO80
 gi|50258657|gb|EAL21342.1| hypothetical protein CNBD0390 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57226722|gb|AAW43182.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1765

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
             +        V   K+  L+ ++ +       +++ +     +  +++            
Sbjct: 1440 LHIPPTKRLIVDSAKLARLDSLLRELKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRL 1499

Query: 91   ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++            I +      + G G+NL    + ++F+   W+       
Sbjct: 1500 DGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTA-ADTVIFYDHDWNPSS---- 1554

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   + R  + G  + V VY L+A+ TI+E +LQ  R K  IQD+++ 
Sbjct: 1555 -DAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGKKDIQDVVVG 1602


>gi|114558328|ref|XP_001157874.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           5 [Pan troglodytes]
          Length = 877

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|121702625|ref|XP_001269577.1| TBP associated factor (Mot1), putative [Aspergillus clavatus NRRL 1]
 gi|119397720|gb|EAW08151.1| TBP associated factor (Mot1), putative [Aspergillus clavatus NRRL 1]
          Length = 1901

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 60/249 (24%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    LQ +       +  +         +L N      +E H +       
Sbjct: 1573 KLFEDFTKKEQKALQDKVGSSEKSDKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1632

Query: 51   -----------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSDL 81
                        H  K+ AL  ++                     +    ++       L
Sbjct: 1633 LTAKHSQIRDVAHAPKLGALRDLLVDCGIGVDPPSEGDLSSASYVSPHRALIFCQMKEML 1692

Query: 82   ARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q    +                  K    +  +N +    +L    +  G GLNL  
Sbjct: 1693 DIVQSEVFKKLLPSVQFLRLDGSVEATKRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT- 1751

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1752 GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFK 1806

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1807 IDVASTVVN 1815


>gi|73946643|ref|XP_860337.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 20 [Canis familiaris]
          Length = 1550

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G   +    A    +  ++  ++ N    +   +            
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEGLVRPPASRSCR 1022

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K  A    +++     S +  ++  F                + 
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++NE      +      + G GLNLQ   + +V F   W+  +     +     
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|49389246|dbj|BAD25208.1| putative SNF2 domain-containing protein [Oryza sativa Japonica Group]
          Length = 2057

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 85/261 (32%), Gaps = 67/261 (25%)

Query: 1    MKQYHKF-----QRELYCDLQGENIE--------AFNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF     ++E+   ++   ++          +        L+L +  +    E  
Sbjct: 1725 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 1784

Query: 48   WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
               +                   H  K+ AL+ I+++                    +++
Sbjct: 1785 PDYLVDLLKEIGMGTGDELHDLHHSPKLVALQEILQECGIGSEISSPDASAAIGQHRVLI 1844

Query: 74   AYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
                                 +            +K    ++ +N +  I +L       
Sbjct: 1845 FAQHKALLDIIEKDLFQSHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVG 1904

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 1905 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 1958

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            V+   R K ++ + ++NA   
Sbjct: 1959 VMSLQRFKVSVANAVINAENA 1979


>gi|320590071|gb|EFX02516.1| chromatin remodeling complex subunit [Grosmannia clavigera kw1407]
          Length = 1931

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y++    K V              K+  L +++ K       +++  
Sbjct: 1198 LMQLRKCLCHPFIYNDAIEEKTVDQATMVQNLVEASSKLVLLRIMLPKLKARGRRVLLFS 1257

Query: 76   HFNS----------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F             L           +  +    I  +N    PL        + G G+
Sbjct: 1258 QFLHQLDIVEDFLTILGLPYGRLDGSMSSMEKQKRIDAFNAPDSPLFAFLLSTRAGGVGI 1317

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +          +R  + G K  V  + L+ +++++E ++Q 
Sbjct: 1318 NL-ATADTVIVMDPDFNPHQDM-----QAFSRAHRIGQKNHVLCFQLVTKDSVEEKIMQV 1371

Query: 184  LRTKSTIQDLLLNALKKE 201
             R K  +   L+ ++  E
Sbjct: 1372 GRKKMALDHALIESMDAE 1389


>gi|125586260|gb|EAZ26924.1| hypothetical protein OsJ_10853 [Oryza sativa Japonica Group]
          Length = 1396

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
            +     + +         K++ L++++ +  A    +++       L  L+         
Sbjct: 1122 SSPPMSNFDPAKMLTDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLDILEDYMNFRKFK 1181

Query: 91   -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       D+        N   I +      + G G+NL    + ++F+ + W+  +
Sbjct: 1182 YFRLDGSSAISDRRDMVRDFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYEIDWNPTQ 1240

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             Q       + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1241 DQ-----QAMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 1287


>gi|303281098|ref|XP_003059841.1| dexh-box helicase [Micromonas pusilla CCMP1545]
 gi|226458496|gb|EEH55793.1| dexh-box helicase [Micromonas pusilla CCMP1545]
          Length = 2006

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 66/182 (36%), Gaps = 19/182 (10%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR--- 83
                   A     +  ++   +    K++AL  ++   K+     ++       L     
Sbjct: 1350 LTPLRAAAVRQQLFFPDRRLVQFDCGKLQALAQLLRTLKSGGHKALIFTQMTKMLDILEA 1409

Query: 84   -------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                              ++    +Q +N + ++ +      S G G+NL  G + ++F+
Sbjct: 1410 FLNLYGYPYCRLDGSTRPEQRQILMQRYNTDPRLFVFILSTRSGGFGINLT-GADTVIFY 1468

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       +++    R  + G  R V +Y ++ + TI+E +L++   K  +    +
Sbjct: 1469 DSDWNPA-----MDQQAQDRAHRIGQTRPVRIYRMVCKGTIEENILKKSMQKRELDHFAI 1523

Query: 196  NA 197
             A
Sbjct: 1524 QA 1525


>gi|74008359|ref|XP_538168.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 1 [Canis familiaris]
          Length = 1054

 Score = 98.7 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|167517999|ref|XP_001743340.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778439|gb|EDQ92054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 927

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 82/232 (35%), Gaps = 40/232 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYD------ 43
           K Y    + QR+ Y  +  ++IEA N           +  ++  +  N    +D      
Sbjct: 302 KVYVGLSRMQRDWYKKILAKDIEAVNGAGKMEKMRLLNILMQLRKCCNHPYLFDGAEPGP 361

Query: 44  ----EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
               ++          +    +   +   + +++       L  L+              
Sbjct: 362 PFTTDQHLIDNCGKMLVLDKLLKKLQEQGSRVLIFSQMTRMLDILEDYCWWRNYNYCRID 421

Query: 91  -GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              + D     I E+N    +  +      + G G+NL    ++++ F   W+ +     
Sbjct: 422 GSTSHDVRNEMIDEYNKENSEKFIFMLSTRAGGLGINL-ATADVVILFDSDWNPQ----- 475

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++     R  + G K+ V ++ LI + T++E ++++   K  +  +++   +
Sbjct: 476 MDLQAQDRAHRIGQKKQVRIFRLITEGTVEERIVEKAEMKLRLDAMVIQQGR 527


>gi|296414511|ref|XP_002836943.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632788|emb|CAZ81134.1| unnamed protein product [Tuber melanosporum]
          Length = 1444

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 75/224 (33%), Gaps = 35/224 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y       Y  L  G      +  +  ++  +++N    +   +        + + + 
Sbjct: 671 EYYKAIITRNYAALNAGATGPKQSLLNIVMELKKISNHPFMFPPAEQRILGGSNRREDVL 730

Query: 61  VIIEKANA----------------APIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
             +  ++                   ++V       L  L           +        
Sbjct: 731 KALIMSSGKMVLLDQLLTKLKADNHRVLVFSQMVHMLDILADYLNLKGFSFQRLDGTIAA 790

Query: 98  ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  +N  + P         + G G+NL    + ++ F   W+ +      +   
Sbjct: 791 GPRRIAIDHFNAPESPDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 844

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  V VY L++++TI+E VL+R R K  ++ L+++
Sbjct: 845 MARAHRIGQKAHVMVYRLVSKDTIEEEVLERARNKMILEHLVIS 888


>gi|170593189|ref|XP_001901347.1| DNA excision repair protein ERCC-6 [Brugia malayi]
 gi|158591414|gb|EDP30027.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
          Length = 1103

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 40/224 (17%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------------DE 44
           K Y ++   RE    L G+     ++    +   +L N                    +E
Sbjct: 499 KLYEEYLSSRECDRILSGK----MDAFVGLITLRKLCNHPDLVTGGPNKFNDYDVTADEE 554

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL---------ARLQKAFPQGRT 93
                     K++ L+ ++   K     +++       L          R +     G T
Sbjct: 555 MGFGAPCRSGKMQVLKALLKLWKRQGQKVLLFSQSRQMLTILEKFVIQERYEYLRMDGTT 614

Query: 94  LDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + +     ++E+N   KI +        G G+NL  G N +V F   W+        +  
Sbjct: 615 VVRSRQLLVEEFNKNNKIFIFLLTTRVGGLGINLT-GANRVVIFDPDWNPST-----DIQ 668

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R  + G +RAV +Y L+   TI+E +  R   K  + + +L
Sbjct: 669 ARERAWRIGQERAVTIYRLLTGGTIEEKIYHRQIFKVFLSNRIL 712


>gi|74008357|ref|XP_865363.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform b
           isoform 7 [Canis familiaris]
          Length = 1033

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 392 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 452 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 511

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LNALK 199
           +   +
Sbjct: 626 IQQGR 630


>gi|41053461|ref|NP_956607.1| chromodomain-helicase-DNA-binding protein 1-like [Danio rerio]
 gi|82209540|sp|Q7ZU90|CHD1L_DANRE RecName: Full=Chromodomain-helicase-DNA-binding protein 1-like
 gi|29791985|gb|AAH50498.1| Chromodomain helicase DNA binding protein 1-like [Danio rerio]
          Length = 1026

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 69/217 (31%), Gaps = 25/217 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y           + +        +  ++  +  +    +        E          
Sbjct: 277 RYYKAILMRDLDAFRTDQSTKTRLLNVLMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASG 336

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++         +++       L  LQ                   ++    I+
Sbjct: 337 KLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIK 396

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            ++   + +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 397 NFSTKDVFIFLLSTKAGGVGMNLTA-ADTVIFVDGDFNPQN-----DLQAAARAHRIGQT 450

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R V V  L+ ++TI+E++  R  +K  + D ++   +
Sbjct: 451 RPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGR 487


>gi|328861599|gb|EGG10702.1| hypothetical protein MELLADRAFT_22404 [Melampsora larici-populina
           98AG31]
          Length = 1154

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           M  Y     + Y  L        +  +  ++  + +N    +   +   +          
Sbjct: 405 MYWYKAILTKNYA-LLASTDSQVSLLNVAMELKKASNHPFLFPGAEPKTDTKETTLKGLV 463

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
           V+  K+  L+ ++   KA    +++       L  +                    ++  
Sbjct: 464 VNSGKMILLDKLLTRLKAEGHRVLIFSQMVRMLDIMSDYMSLRGYIFQRLDGTVASEERR 523

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N    P         + G G+NL    + ++ F   W+ +      +   + R 
Sbjct: 524 KAIGHFNAPDSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARA 577

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V VY L+ ++T++E VL+R + K  ++  ++N +
Sbjct: 578 HRIGQKNHVNVYRLVTKDTVEEDVLERAKRKMILEYAIINQM 619


>gi|145255017|ref|XP_001398836.1| TBP associated factor (Mot1) [Aspergillus niger CBS 513.88]
 gi|134084423|emb|CAK97415.1| unnamed protein product [Aspergillus niger]
          Length = 1895

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 73/243 (30%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYDEEKHWKE------------- 50
             K Q+EL   L         +         +L N      +E H +              
Sbjct: 1576 KKEQKELANKLGSSEKSDKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQYLTTKQSH 1635

Query: 51   ----VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    +V       L      
Sbjct: 1636 IRDVSHAPKLSALRDLLLDCGIGVDPPTEGDLGTGASYVSPHRALVFCQMKEMLDIVQSE 1695

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                            G    K    +  +N +    +L    +  G GLNL  G + ++
Sbjct: 1696 VLRKLLPSVQYLRLDGGVEATKRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLT-GADTVI 1754

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1755 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1809

Query: 194  LLN 196
            ++N
Sbjct: 1810 VVN 1812


>gi|330930041|ref|XP_003302867.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
 gi|311321495|gb|EFQ89043.1| hypothetical protein PTT_14851 [Pyrenophora teres f. teres 0-1]
          Length = 812

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 511 LKVIGMLKKLCNHPDLLNLPEDLPGCENTLPDDFVQKDARGRDREVKTWYSGKMAVLDRM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L                      + K    + ++N+ + 
Sbjct: 571 LARIRAETNDKIVLISNYTQTLDIFAMLCRSRGYGCFRLDGTMNVSKRQKLVDKFNDPES 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           P  +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 PEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  I   TI+E V QR   K ++   ++++ +
Sbjct: 685 YRFITTGTIEEKVFQRQSHKQSLSSCVVDSAE 716


>gi|189211141|ref|XP_001941901.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187977994|gb|EDU44620.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 812

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 511 LKVIGMLKKLCNHPDLLNLPEDLPGCENTLPDDFVQKDARGRDREVKTWYSGKMAVLDRM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L                      + K    + ++N+ + 
Sbjct: 571 LARIRAETNDKIVLISNYTQTLDIFAMLCRSRGYGCFRLDGTMNVSKRQKLVDKFNDPES 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           P  +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 PEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  I   TI+E V QR   K ++   ++++ +
Sbjct: 685 YRFITTGTIEEKVFQRQSHKQSLSSCVVDSAE 716


>gi|114558326|ref|XP_001158033.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           8 [Pan troglodytes]
          Length = 896

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|189240851|ref|XP_001812556.1| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3
            [Tribolium castaneum]
          Length = 1966

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L      ++ +  +  +   +  N    +        +         
Sbjct: 978  KYYKYILTRNFEALNPKGGGQSVSLLNIMMDLKKCCNHPYLFPVAAEEAPIGPTGGYDIQ 1037

Query: 53   -----DEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+   A  + I +     +++       L  L+          +         
Sbjct: 1038 SLIKASGKLVLLAKMLRILREQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGS 1097

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1098 SRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1151

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1152 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1193


>gi|70950861|ref|XP_744718.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524786|emb|CAH76731.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1330

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEV------HD 53
            ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 803  IEYYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCCEPIDKDEYRERLVYSS 862

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             KI  LE ++ +       +++       L              +      T +     +
Sbjct: 863  GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMTKEMRKKAM 922

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 923  NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 976

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 977  GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 1018


>gi|194036340|ref|XP_001928553.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus
           scrofa]
          Length = 901

 Score = 98.7 bits (244), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 73/217 (33%), Gaps = 25/217 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 290 KYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASG 349

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 350 KLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 409

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 410 NFGQQPIFIFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 463

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++V V  LI ++T++E++ ++  +K  + + ++   +
Sbjct: 464 KSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIEGGR 500


>gi|170089013|ref|XP_001875729.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164648989|gb|EDR13231.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1011

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 80/229 (34%), Gaps = 41/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-------------ASKTVKCLQLANGAVYY--------DE 44
           + QR+ Y  +  ++I+A N               +  ++  ++      +          
Sbjct: 372 EMQRKWYRSVLEKDIDAVNGGCLTGKKEGKTRLMNMVMQLRKVTCHPYLFDGAEPGPPYT 431

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGR 92
                  +  K+  L+ ++   KA  + +++             +             G 
Sbjct: 432 TDEHLIQNSGKMVILDKLLANMKAKGSRVLIFSQMSRVLDILEDYCLFRQYKYCRIDGGT 491

Query: 93  TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +     I E+N+      +      + G G+NL    +I+V +   W+ +      + 
Sbjct: 492 AHEDRIAAIDEYNKPGSERFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DL 545

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + R  + G  + V+V+  I + +++E +L+R   K  +  L++   +
Sbjct: 546 QAMDRAHRIGQTKQVYVFRFITEGSVEERMLERAAQKLRLDQLVIQQGR 594


>gi|289619716|emb|CBI53999.1| unnamed protein product [Sordaria macrospora]
          Length = 861

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 28/213 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R    DL  + I      +  ++   + N     Y       + +         K+
Sbjct: 562 EEIERAQTLDLAKKEISNKKLGNPLLQLRLVCNSPHNFYNPWSNSNQPIDESIVTASGKM 621

Query: 57  KALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTIQ 102
             L+ ++         +++   F        D  R  +++   R        D+     Q
Sbjct: 622 LLLDRLLPALFERGHKVLIFSQFKTQLDILEDYCRELRSWDICRIDGGVAQDDRRAQIEQ 681

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              +  + +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 682 FNTDPAVKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRCHRIGQT 735

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R V VY L  + T++E +L     K  ++ L++
Sbjct: 736 RPVVVYRLATKGTVEEELLMSADAKRRLEKLVI 768


>gi|74008347|ref|XP_865278.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a1 isoform a
           isoform 2 [Canis familiaris]
          Length = 1070

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKVYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|50553882|ref|XP_504352.1| YALI0E24431p [Yarrowia lipolytica]
 gi|49650221|emb|CAG79951.1| YALI0E24431p [Yarrowia lipolytica]
          Length = 940

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 37/227 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           + Y K   E    L+   +++F S    +   ++ N  +   E+    +       +  K
Sbjct: 587 EIYTKLSSEYLNRLERHQVDSFKS---ILSLRKVCNSPILLSEDGPALDSGKAYLRNSGK 643

Query: 56  IKALEVIIEK---------ANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDK 96
           +  L  +I +          NA  +++   F            DL               
Sbjct: 644 MNTLFRMIGQLRARNKMDPDNAEKVVIVSSFTQTLDVIEGLVKDLKLSFTRLDGSVQASA 703

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               ++++N        +      + G G+NL  G + L  F   W+       ++   +
Sbjct: 704 RAKIVKQFNSSSADSCFVFLLSARAGGVGINL-IGASRLFLFDPDWNPA-----VDLQAM 757

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R  + G K+ V++Y L+    IDE + QR   K+ + + L+   ++
Sbjct: 758 ARIHRDGQKKPVYIYRLLTTGCIDEKIFQRQTIKTGLANSLIEGTEE 804


>gi|303284137|ref|XP_003061359.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456689|gb|EEH53989.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2006

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 77/253 (30%), Gaps = 64/253 (25%)

Query: 2    KQYHKFQRELYCDLQGENIE-------------AFNSASKTVKCLQLANGAVYYDEEKHW 48
            K Y  F+           +                +         +L +     +  K  
Sbjct: 1672 KLYDAFEGSSVKSEIETAVSGGGGGADGDGAGATSHVFQALQYLRKLCSHPRLVNGGKKA 1731

Query: 49   KEVH------DEKIKALEVII-------------------------EKANAAPIIVAYH- 76
                        K  AL+ I+                          +++   +++    
Sbjct: 1732 VGGKVSAEDASPKFVALKQILLDAGIGRDPDVEREDQETGGFAKKESESSGHRVLIFTQL 1791

Query: 77   -----------FNSDLARLQKAFPQGR-TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
                       F + +  +      G     +    ++++N +  I +L       G GL
Sbjct: 1792 KGLLDLVEEELFGTMMRGVSWLRLDGSVPPTRRFDVVRKFNADPSIDVLLLTTHVGGLGL 1851

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +VF    W+ ++     +   + R  + G K+ V VY L+ + T++E ++  
Sbjct: 1852 NLTS-ADTVVFLEHDWNPQK-----DLQAMDRAHRLGQKKTVNVYRLLTKGTMEEKIMGL 1905

Query: 184  LRTKSTIQDLLLN 196
             R K  + + ++N
Sbjct: 1906 QRFKLDVANAVVN 1918


>gi|224044097|ref|XP_002190618.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1168

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 71/259 (27%)

Query: 8    QRELYC--DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----------- 54
            ++E         +     +  S  ++  Q                ++ E           
Sbjct: 902  RKEFLAGSQSASQVSSTVHVLSMLLRLRQCCCHLSLLKMALDQVNLNSEGLALSIEEQLG 961

Query: 55   ---------------------------------------KIKALEVIIEKANAAPIIVAY 75
                                                    +  L+ I         +V  
Sbjct: 962  ALTLSELQTPDSESTVYLNGTAFKTDIFDITRESTKVAQLLAELKTIQSHPEPQKSVVVS 1021

Query: 76   HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGL 123
             + S L  +     +               +    ++E+N       ++     + G GL
Sbjct: 1022 QWTSMLKVVAVHLQRLGLKCATVDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGL 1081

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  GGN L    + W+     Q  +RI      + G K+ V ++  + + T++E +LQ 
Sbjct: 1082 NLT-GGNHLFLLDMHWNPALEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEENILQL 1135

Query: 184  LRTKSTIQDLLLNALKKET 202
             + K  +   +L+  K ET
Sbjct: 1136 QKRKKGLAQQILSG-KGET 1153


>gi|213402301|ref|XP_002171923.1| TATA-binding protein-associated factor MOT1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999970|gb|EEB05630.1| TATA-binding protein-associated factor MOT1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1915

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 58/232 (25%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKH-----------------WKEVHDEKIKAL 59
            G+     +         +L N       +KH                     H  K+ AL
Sbjct: 1619 GKVKGKTHIFQALQYMRKLCNHPALILTKKHPESAAIEARLQKENSSIHDFKHAPKLTAL 1678

Query: 60   EVIIEKAN---------------------AAPIIVAYHFNSDLARLQKAF---------- 88
              ++ + N                        +++       L  ++             
Sbjct: 1679 RQLLLECNIGTENDSALGANGGTVGSAVSEHRVLIFCQLKDMLDIVENDVLRKTMPSVTY 1738

Query: 89   ---PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     +K    +  +N +  I +L       G GLNL  G + ++F    W+    
Sbjct: 1739 LRLDGSVDPNKRQEVVTRFNSDPSIDVLLLTTHVGGLGLNLT-GADTVIFVEHDWNPMR- 1796

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +   + R  + G K+ V VY LI + T++E ++   + K  +   ++N
Sbjct: 1797 ----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQQFKLNVASTIVN 1844


>gi|238898768|ref|YP_002924450.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466528|gb|ACQ68302.1| phage DNA helicase, partial [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 157

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 5/144 (3%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           +E +I++A   P++VAY++ SDLA ++  FP+   +     TI  WN GKIPLL AHPAS
Sbjct: 1   MEEMIQEAAGQPVLVAYNYQSDLALIKVRFPKAELIGHAADTIDRWNTGKIPLLLAHPAS 60

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GHGLNLQ GGNI+V+F L W LE +QQ   R+      + G  R VF+++L+  ++ID 
Sbjct: 61  AGHGLNLQSGGNIIVWFGLNWSLELYQQFNARL-----HRQGQTRPVFIHHLVMNDSIDL 115

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            VL+ L  K   Q  LL+ALKK+ 
Sbjct: 116 TVLEALENKHITQKALLDALKKDI 139


>gi|67523645|ref|XP_659882.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|40745233|gb|EAA64389.1| hypothetical protein AN2278.2 [Aspergillus nidulans FGSC A4]
 gi|259487671|tpe|CBF86520.1| TPA: catalytic subunit of the SWI/SNF chromatin remodeling complex
            (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1407

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 75/215 (34%), Gaps = 30/215 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----------KIKA 58
            + +  D +G  +     ++  ++  +L N    +++ +                  K + 
Sbjct: 801  KMVVSDGKGGKVGMRGLSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDLIWRTAGKFEL 860

Query: 59   LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNE 106
            L+ I+ K       +++ +     +  ++                   D     ++ +N 
Sbjct: 861  LDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNA 920

Query: 107  GKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                         + G GLNLQ   + ++ F   W+  +     +     R  + G K  
Sbjct: 921  PDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQKNE 974

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +  LI  N+++E +L+R + K  +   ++ A K
Sbjct: 975  VRILRLITSNSVEEKILERAQFKLDMDGKVIQAGK 1009


>gi|212532137|ref|XP_002146225.1| SNF2 family helicase/ATPase PasG, putative [Penicillium marneffei
           ATCC 18224]
 gi|210071589|gb|EEA25678.1| SNF2 family helicase/ATPase PasG, putative [Penicillium marneffei
           ATCC 18224]
          Length = 916

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L  + I +    +  ++     N     Y+        V         K+
Sbjct: 617 EEIERAKTIKLAKKEIGSKKLQNPIMQARLACNSPHNFYWPWGDDSSTVDETLITASGKM 676

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  +Q    Q           G +       I+ 
Sbjct: 677 LLLDRLVPCLMKKGHKILIFSQFKTQLDLIQDWATQLRGWNCCRIDGGVSQVDRRAQIKA 736

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N      +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 737 FNSNKNFKIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 790

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 791 RPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 831


>gi|73946655|ref|XP_860536.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 25 [Canis familiaris]
          Length = 1548

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G      + A    +  ++  ++ N    +   +    V       
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIEVKPTVGDECMAE 1020

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K  A    +++     S +  ++  F                + 
Sbjct: 1021 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1080

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++NE      +      + G GLNLQ   + +V F   W+  +     +     
Sbjct: 1081 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQD 1134

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1177


>gi|114558336|ref|XP_001157822.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           4 [Pan troglodytes]
          Length = 692

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 84  RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 143

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 144 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 203

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 204 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 257

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 258 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 292


>gi|270013510|gb|EFA09958.1| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]
          Length = 1969

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L      ++ +  +  +   +  N    +        +         
Sbjct: 981  KYYKYILTRNFEALNPKGGGQSVSLLNIMMDLKKCCNHPYLFPVAAEEAPIGPTGGYDIQ 1040

Query: 53   -----DEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+   A  + I +     +++       L  L+          +         
Sbjct: 1041 SLIKASGKLVLLAKMLRILREQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGAITGS 1100

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1101 SRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1154

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1155 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1196


>gi|149024737|gb|EDL81234.1| rCG30890, isoform CRA_a [Rattus norvegicus]
          Length = 1668

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 684 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNGSYDGS 743

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 744 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 803

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 804 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 857

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 858 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 899


>gi|324507205|gb|ADY43057.1| DNA repair and recombination protein RAD54-like protein [Ascaris
           suum]
          Length = 755

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 77/236 (32%), Gaps = 47/236 (19%)

Query: 2   KQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDE------------- 44
           K Y K                 I    + S      +L N      +             
Sbjct: 432 KLYQKLISSKRLKEDTSRSDGKITG-TALSFITNLKKLCNHPQLVYDKCQKNEEGFQGCL 490

Query: 45  --------EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF----- 88
                   +K ++     K+K L+ ++   ++      ++  ++   +    +       
Sbjct: 491 ELFPSGFSDKTFEPAFSGKMKVLDYLLAVTKQTTNDKFVLVSNYTQTIDSFVELCKLRRY 550

Query: 89  -----PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    ++ +    ++++N+      +      + G GLNL  G N LV F   W+ 
Sbjct: 551 GYVRLDGSSSIKQRAKIVEKFNDPTSSEYVFLLSSKAGGCGLNL-IGANRLVMFDPDWNP 609

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +   + R  + G K+  F+Y L+A  TI+E + QR   K  +   +++ 
Sbjct: 610 AN-----DDQAMARIWRDGQKKHCFIYRLLATGTIEEKMFQRQTHKKALSSCVVDE 660


>gi|281212152|gb|EFA86312.1| hypothetical protein PPL_00102 [Polysphondylium pallidum PN500]
          Length = 2033

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 81/220 (36%), Gaps = 30/220 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-SASKTVK-----CLQLANGAVYYDEEKHWKEVHDEK 55
            K Y+  + +        + E  N   +K +K       ++ N    + ++++  + +  +
Sbjct: 1280 KMYNLIRTKGVSKFTAGSGEDGNPKLAKGLKNTLVQLRKICNHPYLFYDDEYAIDDYMIR 1339

Query: 56   IKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
                  +++K       +   +++       +  L++ F                D+   
Sbjct: 1340 CAGKFDLLDKILPKLKASGHRVLIFSQMTHLIDILEQFFYYKGYKYLRLDGSTKSDERGP 1399

Query: 100  TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  +N    +  +      + G GLNLQ   + ++ F   W+ +     ++     R  
Sbjct: 1400 LLNLFNAENSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRAH 1453

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K+ V V  L+  N+++E ++ R   K  +   ++ A
Sbjct: 1454 RIGQKQTVKVLRLVTANSVEERIIARANFKKELDRKIIQA 1493


>gi|255729544|ref|XP_002549697.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
 gi|240132766|gb|EER32323.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
          Length = 1024

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 81/226 (35%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYYDEEK--------H 47
            Q+ LY  +  ++I+A N             +  ++  +  N    ++  +         
Sbjct: 374 MQKNLYKKILEKDIDAVNGSNGKKESKTRLLNIVMQLRKCCNHPYLFEGMEPGPPYTTDE 433

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
               + +K+  L+ ++   +   + +++    +  L  L+                    
Sbjct: 434 HLVFNSQKMLILDQMLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHS 493

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 494 DRINAIDEYNKPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAM 547

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +N I+E VL+R   K  +  L++   +
Sbjct: 548 DRAHRIGQTKQVKVFRFITENAIEEKVLERATQKLRLDQLVIQQGR 593


>gi|67527878|ref|XP_661791.1| hypothetical protein AN4187.2 [Aspergillus nidulans FGSC A4]
 gi|40740096|gb|EAA59286.1| hypothetical protein AN4187.2 [Aspergillus nidulans FGSC A4]
 gi|259481212|tpe|CBF74527.1| TPA: TBP associated factor (Mot1), putative (AFU_orthologue;
            AFUA_1G05830) [Aspergillus nidulans FGSC A4]
          Length = 1904

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 60/249 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    LQ +          +         +L N      +E H +       
Sbjct: 1579 KLFEDFTKKEQKALQEKMGSSEKADKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1638

Query: 51   -----------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSDL 81
                        H  K+ AL+ ++                     +    +V       L
Sbjct: 1639 LQEKKSYLRDVSHAPKLSALKDLLLDCGIGVEPTEGNLGAGASYVSPHRALVFCQMKEML 1698

Query: 82   ARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q    Q                  +    +  +N +    +L    +  G GLNL  
Sbjct: 1699 DIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLT- 1757

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1758 GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFK 1812

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1813 IDVASTVVN 1821


>gi|289620805|emb|CBI52539.1| putative RAD54 protein [Sordaria macrospora]
          Length = 824

 Score = 98.3 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W     + +  +
Sbjct: 513 LKAINMLKKLCNHPDLLDLSADLPGCEQYWPDDYVPKEARGRDRDVKPWYSGKMQVLDRM 572

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L   ++                 ++K    + ++N+ + 
Sbjct: 573 LARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGTMNVNKRQKLVDKFNDPEG 632

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 633 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 686

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 687 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 718


>gi|296412613|ref|XP_002836017.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629817|emb|CAZ80174.1| unnamed protein product [Tuber melanosporum]
          Length = 591

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 26/212 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKALEV 61
           + E       + I      ++ ++     N    +       E          K+  LE 
Sbjct: 291 EDEKLILQATQEIGTKKLQNRIMQLRLACNSPHLFYWPWGQGEPDERLVTVSGKMMLLER 350

Query: 62  IIEK--ANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWN-EG 107
           ++    A    +++   F   L                    G   +     I+ +N + 
Sbjct: 351 LVPALFARGHKVLIFSQFTKMLDIIEEWAVTLRHWPVCRIDGGIKQEDRREHIRRFNKDE 410

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL    + ++ F   W+ ++     +     R  + G K+ V +
Sbjct: 411 GWNIFLLSTRAGGLGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQKKPVII 464

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y      T+++ +L++   K  ++ L++   K
Sbjct: 465 YRFATAATVEQTILEKADGKRRLEKLVIQKGK 496


>gi|219112733|ref|XP_002178118.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411003|gb|EEC50932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 995

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 84/218 (38%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCD--LQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEV----HD 53
           + Y +  ++   D  L G + +A +    +  ++  ++ N    +  E +          
Sbjct: 504 ELYKQISKKAVADTALMGTDTQAPSRGLNNIVMQLRKVCNHPYLFSPEGYHINDIIVRSS 563

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K+  L+ ++ K  A    +++     + +  ++  F                ++    +
Sbjct: 564 GKMALLDQMLPKLRAAGHRVLMFTQMTAVMTIMEDYFALRGYKSLRLDGSTPAEEREKRM 623

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N    P  +      + G GLNL    + ++ F   W+      M++     R  + 
Sbjct: 624 YKFNAPDSPYFVFLLSTRAGGLGLNLTS-ADTVIIFDSDWNP-----MMDLQAQDRAHRI 677

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G +  V V+ LI  + ++E +L R   K ++ +L++ +
Sbjct: 678 GQRSDVSVFRLITYSPVEEKILSRANEKLSVSELVVES 715


>gi|301788384|ref|XP_002929608.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Ailuropoda melanoleuca]
          Length = 886

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 72/214 (33%), Gaps = 25/214 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 278 KYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASG 337

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 338 KLYLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 397

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  + +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 398 NFGQQPVFIFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 451

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++V V  LI ++T++E+V ++  +K  + + ++ 
Sbjct: 452 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 485


>gi|237841199|ref|XP_002369897.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211967561|gb|EEB02757.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
          Length = 1606

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKA 58
             Y + Q +    +    ++      +  ++  ++AN    + +E    E       K + 
Sbjct: 953  VYKQIQEKGLRTVDQVGHVTKRGFQNTLMQLRKIANHPYLFVDEYLVNEDLVRVAGKFEC 1012

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
            L+ ++ K       +++       L  + +                   +    ++E+N 
Sbjct: 1013 LDRMLPKLLHFKHKVLIFSQMTQVLDLMAEYMHLRGYKYARLDGSVGLTERKERMEEFNN 1072

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             ++   +      + G GLNLQ   + +V F   ++  +     +   + R  + G  + 
Sbjct: 1073 AEVDTMIFMLSTRAGGLGLNLQA-ADTVVLFDSDFNPHQ-----DLQAMCRAHRLGQTKQ 1126

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L+  + ++E++L++   K  I  +++ A
Sbjct: 1127 VKVFRLVTISGVEEIILEKANRKLNIDQMVIQA 1159


>gi|114558330|ref|XP_001157925.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           6 [Pan troglodytes]
          Length = 791

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|326669481|ref|XP_001922536.3| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like [Danio
           rerio]
          Length = 2485

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 76/240 (31%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N             + +KEV+  
Sbjct: 705 KYYRAILEKNFSFLAKGAGQANVPNLLNTMMELRKCCNHPYLIKGAEEKIMEDFKEVYSP 764

Query: 54  --------------EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+    Q R L + 
Sbjct: 765 AAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 824

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 825 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 881

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      +
Sbjct: 882 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSL 938


>gi|226289865|gb|EEH45349.1| ISWI chromatin-remodeling complex ATPase ISW1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1146

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 446 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 505

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 506 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 565

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 566 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 619

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 620 AHRIGQTKQVVVFRFVTENAIEEKVLKRAAQKLRLDQLVIQQGRAQ 665


>gi|326426828|gb|EGD72398.1| chromodomain helicase DNA binding protein 1 [Salpingoeca sp. ATCC
            50818]
          Length = 1534

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 76/224 (33%), Gaps = 33/224 (14%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD------------EEKHW 48
            + Y     + Y  L+  +  +  +  +  ++  +  N A   D            E    
Sbjct: 831  QIYKHIITKNYTALRSLKKGQKSSLVNVIMELKKCCNHASLIDQAPLSNPDVSPTENMRN 890

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K+  L+ ++++ +     +++       L  L                    ++
Sbjct: 891  LLKGSGKLILLDKLLQRLHDKGHRVLIFSQMVLMLDVLATYLMMKGYPFQRLDGNIPNER 950

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N              + G G+NL    + ++ F   W+ +      +     
Sbjct: 951  RKQAIDHFNAPGSADFCFILSTRAGGLGVNL-ATADTVIIFDSDWNPQN-----DLQAQA 1004

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G  R V +Y  +++NT++E +L+R + K  +  L++  +
Sbjct: 1005 RAHRIGQTRQVNIYRFVSKNTVEEDILERAKKKMVLDHLVIQRM 1048


>gi|296201335|ref|XP_002806848.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 3-like, partial [Callithrix jacchus]
          Length = 1916

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 984  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1043

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1044 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1103

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1104 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1199


>gi|239610005|gb|EEQ86992.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis ER-3]
          Length = 862

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIK 57
           K ++     L  + I +    +  ++     N    +         H          K+ 
Sbjct: 559 KIEKTKTAQLAKKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSHIDESLITSSGKML 618

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            L+ +I    +    I++   F + L                      +       IQ +
Sbjct: 619 LLDRLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNCCRIDGAVSQVDRQAQIQAF 678

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N      +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 679 NTNQDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 732

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 733 PVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGKFKSL 772


>gi|57208178|emb|CAI42684.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208839|emb|CAI42614.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
          Length = 1005

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 392 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 451

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 452 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 511

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 512 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 570

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 571 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 625

Query: 195 LNALK 199
           +   +
Sbjct: 626 IQQGR 630


>gi|153807263|ref|ZP_01959931.1| hypothetical protein BACCAC_01541 [Bacteroides caccae ATCC 43185]
 gi|149130383|gb|EDM21593.1| hypothetical protein BACCAC_01541 [Bacteroides caccae ATCC 43185]
          Length = 948

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 21/207 (10%)

Query: 3   QYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y + +  L   L           +F+  +  ++  QLA        + +       +I 
Sbjct: 730 LYEQEKNSLRNILLQHPQNMDKLHSFSILNGILRLRQLACHPQLIYPDFNGASGKAIQII 789

Query: 58  ALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            +   + ++    +++   F   L            + A   G T ++         +  
Sbjct: 790 EIFDTL-RSEGHKVLIFSSFVKHLEVLAEAFRERGWKYALLTGATNNRPSEIAHFTEQKD 848

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           +        + G GLNL    + +     WW+        E   + R  + G  + V  Y
Sbjct: 849 VQAFLISLKAGGVGLNLTQ-ADYVFIIDPWWNPAA-----ESQAIARAHRIGQDKQVIAY 902

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I QN+I+E +L     K  + +  +
Sbjct: 903 RFITQNSIEEKILYLQDEKRKLAETFV 929


>gi|71004464|ref|XP_756898.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
 gi|74704380|sp|Q4PGL2|INO80_USTMA RecName: Full=Putative DNA helicase INO80
 gi|46095890|gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
          Length = 1910

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
            V   K+  L+V++ +  AN   +++ +     +  +++                +  D+ 
Sbjct: 1576 VDSSKLAKLDVLLRELKANGHRVLIYFQMTRMIDLMEEYLIYRQYKYLRLDGASKISDRR 1635

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + ++ +      + G G+NL    + ++F+   W+        +   + R  
Sbjct: 1636 DMVTDWQTKPELFIFLLSTRAGGLGINLTA-ADTVIFYDHDWNPSN-----DSQAMDRAH 1689

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  + V VY LI + TIDE +++  R K  +QD+++ 
Sbjct: 1690 RLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVVG 1728


>gi|226290524|gb|EEH46008.1| helicase [Paracoccidioides brasiliensis Pb18]
          Length = 857

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 74/220 (33%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIK 57
           + +R     L  + I +    +  ++     N    +                    K+ 
Sbjct: 552 RIERAKTAQLAKKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSSVDSSLITSSGKML 611

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            ++ +I    +    I++   F + L                      +       I  +
Sbjct: 612 LIDRLIPCLMSKNHKILIFSQFKTQLDILQDYAVYLRGWNCCRIDGAVSQADRQAQIAAF 671

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 672 NTDPNYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 725

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 726 PVIVYRLATRGTVEQTLLEKADSKRKLEKLVIQKGKFKSL 765


>gi|302406532|ref|XP_003001102.1| TATA-binding protein-associated factor MOT1 [Verticillium albo-atrum
            VaMs.102]
 gi|261360360|gb|EEY22788.1| TATA-binding protein-associated factor MOT1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1876

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 73/240 (30%), Gaps = 57/240 (23%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW---------------- 48
             K Q E     + +     +         +L N      +  H                 
Sbjct: 1558 KKLQEEA---GKDDKEAKSHIFQALQYMRKLCNSPALVMKPGHNLYDDTQRLLNKQGTSL 1614

Query: 49   -KEVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLARLQKAF-- 88
                H  K+ AL  ++                         +V       L  +Q     
Sbjct: 1615 EDPAHAPKLTALRDLLVDCGIGVEGAESNDPLYQPIKPHRALVFCQMKEMLDMVQNTVLK 1674

Query: 89   -----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                         G   +K    + ++N +    +L    +  G GLNL  G + ++F  
Sbjct: 1675 SMLPSVSFLRLDGGVEANKRQAIVNKFNQDPSYDVLLLTTSVGGLGLNLT-GADTVIFVE 1733

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1734 HDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKIDVASTVVN 1788


>gi|242793727|ref|XP_002482225.1| SNF2 family helicase/ATPase (Ino80), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218718813|gb|EED18233.1| SNF2 family helicase/ATPase (Ino80), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1662

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1375 DSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1434

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +  +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1435 TVADFQHRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1488

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1489 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1527


>gi|320581998|gb|EFW96217.1| DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 828

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 42/208 (20%)

Query: 26  ASKTVKCLQLANGAVYYD------------------------EEKHWKEVHDEKIKALEV 61
                   +L       D                        + + W       ++    
Sbjct: 537 LKAIGLLRKLCTHPRLLDLPNDISGSENILPDDYDFGNGRNKDVQTWYSGKFAMLERFLF 596

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIP- 110
            I K     I++  +F   L  ++K     R           ++K    +  +N+     
Sbjct: 597 KIRKETDDKIVLISNFTQTLDLIEKLCRHHRFGTVRLDGSLGINKRQKLVDRFNDPNADE 656

Query: 111 -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+NL  G N L+     W+    Q       + R  + G K+  F+Y 
Sbjct: 657 FVFLLSSKAGGCGINL-IGANRLILLDPDWNPASDQ-----QALARVWRDGQKKNCFIYR 710

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            IA  TI+E + QR   K  +   ++++
Sbjct: 711 FIATGTIEEKIFQRQSAKMELSTCVVDS 738


>gi|221483589|gb|EEE21901.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            GT1]
          Length = 1628

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKA 58
             Y + Q +    +    ++      +  ++  ++AN    + +E    E       K + 
Sbjct: 953  VYKQIQEKGLRTVDQVGHVTKRGFQNTLMQLRKIANHPYLFVDEYLVNEDLVRVAGKFEC 1012

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
            L+ ++ K       +++       L  + +                   +    ++E+N 
Sbjct: 1013 LDRMLPKLLHFKHKVLIFSQMTQVLDLMAEYMHLRGYKYARLDGSVGLTERKERMEEFNN 1072

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             ++   +      + G GLNLQ   + +V F   ++  +     +   + R  + G  + 
Sbjct: 1073 AEVDTMIFMLSTRAGGLGLNLQA-ADTVVLFDSDFNPHQ-----DLQAMCRAHRLGQTKQ 1126

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L+  + ++E++L++   K  I  +++ A
Sbjct: 1127 VKVFRLVTISGVEEIILEKANRKLNIDQMVIQA 1159


>gi|327259622|ref|XP_003214635.1| PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Anolis
            carolinensis]
          Length = 1421

 Score = 98.3 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------- 90
                 +K        K+ AL+V++   K+    +++       +  L++           
Sbjct: 1091 FIRIPDKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMR 1150

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1151 LDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1205

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1206 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1255



 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 35/134 (26%), Gaps = 3/134 (2%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII 63
               +      Q       +  +  ++  ++ N    ++ ++ W   H   K   +   +
Sbjct: 787 DDLLQSSMGTTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQISKFL 846

Query: 64  EKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
                  +       +   L          ++L       +E     +  +   PA    
Sbjct: 847 YHHGQIRVYNHSRDRWLQFLLSPFAPDHIQQSLFHRKGNEKESCFSFLRFIDISPAEMAS 906

Query: 122 GLNLQYGGNILVFF 135
            ++  +    L  F
Sbjct: 907 LVHKGHLARWLALF 920


>gi|325089155|gb|EGC42465.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           H88]
          Length = 830

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 532 LKAIGILKKLCNHPDLLNLGADLPGSEQILPDDYVPLESRGRDRDVRSWYSGKMMVLDRM 591

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+   
Sbjct: 592 LARIRQDTNDKIVLISNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDPNG 651

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 652 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 705

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 706 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 737


>gi|260809115|ref|XP_002599352.1| hypothetical protein BRAFLDRAFT_64295 [Branchiostoma floridae]
 gi|229284629|gb|EEN55364.1| hypothetical protein BRAFLDRAFT_64295 [Branchiostoma floridae]
          Length = 996

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 46/234 (19%)

Query: 1   MKQYHKFQRE------------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW 48
           ++ Y  F +                D + +     +         ++ N         H 
Sbjct: 696 VQLYEDFAKSQARKGVEDSITMATADEEEKPKRTTHIFQALQYLQKVCNHPKLVLSCSHP 755

Query: 49  KEV-----------------HDEKIKALEVIIEKANAAPIIVAYHFNSDL---------A 82
           +                   H  K+ AL  ++        +      SDL          
Sbjct: 756 EFQQVALQLKAQQSSLDDIQHSAKLTALRQLLLDCG--IGVPDSGQTSDLLSDAVVGQHR 813

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            L     +      +   ++  N+  I LL       G GLNL  G + ++F    W+  
Sbjct: 814 ALVFCQLKSMLDILEKDLLKFNNDPSIDLLLLTTHVGGLGLNLT-GADTVIFVEHDWNPM 872

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   + R  + G K+ V VY L+ Q T++E ++   + K  I + +++
Sbjct: 873 R-----DLQAMDRAHRLGQKKVVNVYRLVTQGTLEEKIMGLQKFKLNIANTVIS 921


>gi|162452831|ref|YP_001615198.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
 gi|161163413|emb|CAN94718.1| hypothetical protein sce4555 [Sorangium cellulosum 'So ce 56']
          Length = 1270

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 21/173 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ--------- 85
            +    YD       +   K+     ++E+  A     +V   F S LA ++         
Sbjct: 1064 SHPRLYD---ARSTLDSSKLARFLGLVEELCAEGQRALVFSQFTSHLALVREALEARGVA 1120

Query: 86   KAFPQGRTLDK-DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
              +  G T  K     ++E+ EG  PL      + G G+NL      ++    WW+    
Sbjct: 1121 YVYLDGETPRKARAERVREFQEGSAPLFLISLKAGGFGINLTA-ATNVIHLDPWWNPA-- 1177

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +E     R  + G +R V +Y L+A  TI+E +L     K ++   +L  
Sbjct: 1178 ---VEDQASDRAHRLGQRRPVTIYRLVALGTIEEKMLSLHAEKRSLVAQVLGG 1227


>gi|119592220|gb|EAW71814.1| FLJ20105 protein, isoform CRA_b [Homo sapiens]
          Length = 1080

 Score = 97.9 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 64/222 (28%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           + Y KF       ++   +E  +  ++     +L +         +   +          
Sbjct: 230 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARAYVDHIDQVTDDTLME 287

Query: 53  -DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDP 98
              K+  L  ++++        +V       L  +++                  L +  
Sbjct: 288 ESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLERE 347

Query: 99  CTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I          +        G GL L      +V F   W+        +   V R  
Sbjct: 348 KRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFDPSWNPAT-----DAQAVDRVY 401

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K  V VY LI   T++E + +R   K ++        K
Sbjct: 402 RIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKK 443


>gi|198420785|ref|XP_002121862.1| PREDICTED: similar to DNA excision repair protein ERCC-6
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB) [Ciona intestinalis]
          Length = 1155

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 41/227 (18%)

Query: 10  ELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
           ++Y +    +I               ++  ++ N    +                     
Sbjct: 276 DVYKEYLDSDIVHSILCRRAKIFVGLIQLRKICNHPDLFTGGHKLMVGEATPGYGDSRRF 335

Query: 52  ----HDEKIKALEVII--EKANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTL 94
                  K+  +E ++   K     +++       L                   Q    
Sbjct: 336 GYWRRSGKMVVVESLLRIWKKQGKKVLLFTQSRKMLGILEDFVKSRSYCYLTMHGQTSVQ 395

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + P   +   +  I +        G G+NL  G + +V +   W+        +     
Sbjct: 396 ARQPLVKKFNEDPSIFVFILTTRVGGLGVNL-IGADRVVIYDPDWNPST-----DTQAQE 449

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  + V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 450 RSWRIGQTKQVTIYRLVTSGTIEEKIYHRQIFKQFMTNRVLKDPKQR 496


>gi|73946637|ref|XP_860229.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 17 [Canis familiaris]
          Length = 1553

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----- 53
             Y   Q +      G   +    A    +  ++  ++ N    +   +            
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEDVLPPKSVAVLG 1022

Query: 54   --------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
                     K + L+ I+ K  A    +++     S +  ++  F               
Sbjct: 1023 MYNLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1082

Query: 94   LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +  
Sbjct: 1083 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQ 1136

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1182


>gi|321468122|gb|EFX79109.1| hypothetical protein DAPPUDRAFT_319863 [Daphnia pulex]
          Length = 4355

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y       +  L      A   N  +  ++  +        +  +   +         
Sbjct: 1949 KYYRGILERNFSFLTKGTTNANVPNLMNTMMELRKCCIHPYLLNGAEEQIQYEMKVSHTS 2008

Query: 52   -----------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  A+   +++       L  L+      +   +  
Sbjct: 2009 DPDLHHKALIQSSGKLVLVDKLLPKLKADGHRVLIFSQMVRCLDILEDYLIYRKYPYERL 2068

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  + +      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2069 DGRIRGNMRQAAIDRYCKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2124

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G K+ V +Y L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2125 --DLQAQARCHRIGQKKMVKIYRLLTRNTYEREMFDKASLKLGLDKAVLQSMN 2175


>gi|326430023|gb|EGD75593.1| snf family helicase [Salpingoeca sp. ATCC 50818]
          Length = 3098

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQG------ 91
                 ++   + H  K++ LE ++ +       +++       L  L++           
Sbjct: 1615 ALVLPDRALIQYHCSKLQVLEKLLREKKAGGHRVLIFTQMAKMLDILEQFLAFHAFTYLR 1674

Query: 92   ----RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +     + +N + ++        S G G+NL  G + +VF+   W+      
Sbjct: 1675 LDGSTPVVRRQQMTERFNRDSRLFCFILSTRSGGLGVNLT-GADTVVFYDSDWNPT---- 1729

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++     R  + G  R V +Y L+   T++E +L++ + K  + D+ +  
Sbjct: 1730 -MDAQAQDRAHRLGQTRDVHIYRLVCAKTVEENILKKAQQKRQLGDIAIEG 1779


>gi|170034779|ref|XP_001845250.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus]
 gi|167876380|gb|EDS39763.1| TATA-binding protein-associated factor 172 [Culex quinquefasciatus]
          Length = 1899

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 56/251 (22%)

Query: 2    KQYHKFQR--------ELYCDLQGENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKE-- 50
            + Y  F R        E   ++ G+ +       + ++ LQ + N      +  H +   
Sbjct: 1575 RLYEDFSRTHLNSDIRECLENIDGQMVSKKTHVFQALRYLQNVCNHPKLVLQPSHPEYQS 1634

Query: 51   ---------------VHDEKIKALEVII----------EKANAAPIIVAYHFNSDLARLQ 85
                            H  K+ AL+ ++             N    ++     + L  ++
Sbjct: 1635 IVSEFSRNSSSLDDIEHSAKLPALKQLLLDCGIGTNEDMSVNQHRALIFCQLKAMLDIIE 1694

Query: 86   K-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                              G         + ++N +  I +L       G GLNL  G + 
Sbjct: 1695 NDLLKKHLPAVSYLRLDGGVPPSSRHQIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GADT 1753

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+      M +   + R  + G K+ V VY LI + +++E ++   + K    
Sbjct: 1754 VIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLLTA 1808

Query: 192  DLLLNALKKET 202
            + +++      
Sbjct: 1809 NTIVSDENASM 1819


>gi|17551114|ref|NP_508736.1| hypothetical protein C52B9.8 [Caenorhabditis elegans]
 gi|13775404|gb|AAK39219.1| Hypothetical protein C52B9.8 [Caenorhabditis elegans]
          Length = 1336

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            Y   Q+ L   L G+      S  +  +   +L N    ++  +               
Sbjct: 619 LYKHMQKGLL--LDGKTNTGSKSLRNTMIHLRKLCNHPFLFENVEESCRNFWDARFISAV 676

Query: 53  -----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
                  K++ L  I+ K       +++ +   S +  ++     G              
Sbjct: 677 DLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPD 736

Query: 96  KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    + ++N              + G GLNLQ   + ++ F   W+  +          
Sbjct: 737 ERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQ 790

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V V+ LI  N+++E +L   R K  + + ++ A K
Sbjct: 791 DRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGK 836


>gi|167527295|ref|XP_001747980.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773729|gb|EDQ87367.1| predicted protein [Monosiga brevicollis MX1]
          Length = 760

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 75/243 (30%), Gaps = 52/243 (21%)

Query: 3   QYHKFQRELYCDLQG----------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
            Y +        L+                    +      +L N      ++   +E  
Sbjct: 423 MYKRLIDSQAIALEDDGPGKTNQKKSGGSGPTPLAFITHLKKLCNHPELIMDKIQAREPG 482

Query: 53  DEKIKA------------------------LEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
             K++                         +  +++      +++  ++   L   ++  
Sbjct: 483 FAKLQDLVPAKWDSRVVSPEWSGKVMVVDAMLAMLKSTTDEKVVLISNYTQTLDLFERLC 542

Query: 89  PQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFS 136
            Q            ++ K    +  +N       +      + G G+NL  G + L+   
Sbjct: 543 RQRRYKYVRLDGTMSIKKRQKVVDHFNAPDSDDFIFMLSSKAGGCGINL-IGASRLILTD 601

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G +R  +VY L+A  TI+E +L R   K+ + D +++
Sbjct: 602 PDWNPAS-----DAQALARCWRDGQRRITYVYRLVATGTIEEKILARQAHKTALSDCVID 656

Query: 197 ALK 199
             +
Sbjct: 657 EAE 659


>gi|159490586|ref|XP_001703254.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas
           reinhardtii]
 gi|158280178|gb|EDP05936.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas
           reinhardtii]
          Length = 1219

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y       + +L   +    +    +   +  +  N    ++  +      +E   A+
Sbjct: 478 QYYKWILTRNFKELNKSSRGGGHVSLLNIIGELKKCCNHPFLFESAEDNYRGSEEDKSAV 537

Query: 60  EVII---------------EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK------- 96
           + +I                KA    +++       L  +      +G    +       
Sbjct: 538 DRLIVPSGKMVLLDKLLRRLKATGHRVLIFSQMVRVLDIISDYMRLRGFPHQRLDGSTPA 597

Query: 97  --DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 ++ +N    P         + G G+NL    + ++ F   W+ +      +   
Sbjct: 598 AARHAAMEHFNRPDSPDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQA 651

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++R  + G    V +Y  +   +++E +L+R + K  +  L++  +
Sbjct: 652 MSRAHRIGQTETVNIYRFVTSGSVEEDILERAKRKMVLDHLVIQRM 697


>gi|114558338|ref|XP_001157674.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|114558340|ref|XP_001157728.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 615

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 7   RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 66

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 67  KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 126

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 127 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 180

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 181 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 215


>gi|21071044|ref|NP_003060.2| probable global transcription activator SNF2L1 isoform a [Homo
           sapiens]
 gi|115311627|sp|P28370|SMCA1_HUMAN RecName: Full=Probable global transcription activator SNF2L1;
           AltName: Full=ATP-dependent helicase SMARCA1; AltName:
           Full=Nucleosome-remodeling factor subunit SNF2L;
           AltName: Full=SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 1
 gi|57208177|emb|CAI42683.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|57208838|emb|CAI42613.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|109658918|gb|AAI17448.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Homo sapiens]
 gi|119632240|gb|EAX11835.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_c [Homo
           sapiens]
          Length = 1054

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|66362430|ref|XP_628179.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
 gi|46227356|gb|EAK88291.1| CHD3 ortholog with 2x chromodomains plus SNF2 ATpase
            (2chromo+helicase+Znf_NFX) [Cryptosporidium parvum Iowa
            II]
          Length = 2055

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 72/225 (32%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEK-------------HW 48
             Y       Y +L         S     ++  ++ N        +             H 
Sbjct: 807  MYKSILTRNYDELSKSTGGTKTSLQNICMELKKVCNHPFLIHRPELDPSQGITVASIQHQ 866

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                  K+  L+ ++ +     + +++       L  + +         +          
Sbjct: 867  LVYGCGKLCLLDKLLSRLREKGSRVLIFSQMVRMLNIISEFLVLRGFRHQRLDGTMGKEL 926

Query: 98   -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G G+NL    + ++ +   W+ +      +     
Sbjct: 927  RKKAMDHFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQN-----DLQAEA 980

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V +Y L+ +++I+E +L+R +TK  +  L++  L 
Sbjct: 981  RAHRIGQKKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGLN 1025


>gi|225432582|ref|XP_002281240.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1103

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIK 57
           YH+        L   + ++ +  + +++  +  N    +  + +  +          K +
Sbjct: 654 YHQVTDLGRVGLDTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFE 713

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            L+ ++ K       +++       +  L+                   ++    ++++N
Sbjct: 714 LLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFN 773

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 774 APDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 827

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 828 EVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 861


>gi|195328571|ref|XP_002030988.1| GM24274 [Drosophila sechellia]
 gi|194119931|gb|EDW41974.1| GM24274 [Drosophila sechellia]
          Length = 1923

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1608 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1667

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1668 EITKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1727

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1728 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1786

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1787 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1841

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1842 LTANTVVSAENA 1853


>gi|296826190|ref|XP_002850934.1| chromatin remodelling complex ATPase chain ISW1 [Arthroderma otae
           CBS 113480]
 gi|238838488|gb|EEQ28150.1| chromatin remodelling complex ATPase chain ISW1 [Arthroderma otae
           CBS 113480]
          Length = 1113

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKT---VKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G      +        ++  +  N    +               
Sbjct: 431 VKWYQKILEKDIDAVNGAQGNRESKTRLVNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 490

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++ +     + +++    +  L  L+                   +  
Sbjct: 491 IDNSGKMVILDKLLSRLFKQGSRVLIFSQMSRVLDILEDYCVFRGHEYCRIDGSTAHEDR 550

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ F   W+ +      +   + R
Sbjct: 551 IQAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILFDSDWNPQA-----DLQAMDR 604

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  I +  I+E VL+R   K  +  L++   + +
Sbjct: 605 AHRIGQTKQVVVFRFITEKAIEEKVLERAAQKLRLDQLVIQQGRAQ 650


>gi|194760847|ref|XP_001962644.1| GF14336 [Drosophila ananassae]
 gi|292630861|sp|B3MMA5|RAD54_DROAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190616341|gb|EDV31865.1| GF14336 [Drosophila ananassae]
          Length = 791

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 76/236 (32%), Gaps = 47/236 (19%)

Query: 1   MKQYHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
           ++ Y  F      R    D   +   +  + +      ++ +      ++   KE     
Sbjct: 425 LQLYTNFLNSDQVRRSLADCNEK--ASLTALADITTLKKICSHPDLIHQKIEAKEKGFEN 482

Query: 53  ------------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----- 86
                               K   L+ ++     A    +++  ++   L   ++     
Sbjct: 483 SQNVLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFEQLARKR 542

Query: 87  -----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWD 140
                      ++ K    + ++N+          +S   G  L   G N L  F   W+
Sbjct: 543 KYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMFDPDWN 602

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +   + R  + G K+  ++Y L+A  TI+E +LQR   K ++   +++
Sbjct: 603 PAN-----DEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIID 653


>gi|157134957|ref|XP_001663375.1| hypothetical protein AaeL_AAEL013189 [Aedes aegypti]
 gi|108870352|gb|EAT34577.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1904

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 81/247 (32%), Gaps = 52/247 (21%)

Query: 2    KQYHKFQR--------ELYCDLQGENIEAFNSASKTVKCLQ-LANGAVYYDEEKHWKE-- 50
            + Y  F R        E   ++ G+ +       + ++ LQ + N      +  H +   
Sbjct: 1577 RLYEDFSRMHLNSDIRECLENIDGQIVSKKTHVFQALRYLQNVCNHPKLVLQPSHPEYQT 1636

Query: 51   -----------VHDEKIKALEVII----------EKANAAPIIVAYHFNSDLARLQK--- 86
                        H  K+ AL+ ++             N    ++     + L  ++    
Sbjct: 1637 ILSEISSMDDIEHSAKLPALKQLLLDCGIGTNEDMSVNQHRALIFCQLKAMLDIIENDLL 1696

Query: 87   ----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                                    + ++N +  I +L       G GLNL  G + ++F 
Sbjct: 1697 KKHLPAVSYLRLDGSVPPSSRHQIVTKFNGDPSIDVLLLTTQVGGLGLNLT-GADTVIFV 1755

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+      M +   + R  + G K+ V VY LI + +++E ++   + K    + ++
Sbjct: 1756 EHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRKSLEEKIMGLQKFKLLTANTVV 1810

Query: 196  NALKKET 202
            +      
Sbjct: 1811 SDENASM 1817


>gi|85092588|ref|XP_959470.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|28920899|gb|EAA30234.1| DNA repair and recombination protein RAD54 [Neurospora crassa
           OR74A]
 gi|40804592|emb|CAF05853.1| Rad54 homolog MUS-25 [Neurospora crassa]
          Length = 831

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W     + +  +
Sbjct: 516 LKAINILKKLCNHPDLLDLSADLPGCEQYWPEDYVPKEARGRDRDVKPWYSGKMQVLDRM 575

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L   ++                 ++K    + ++N+ + 
Sbjct: 576 LARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGTMNVNKRQKLVDKFNDPEG 635

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 636 DEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 689

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 690 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 721


>gi|258573727|ref|XP_002541045.1| chromatin remodelling complex ATPase chain ISW1 [Uncinocarpus
           reesii 1704]
 gi|237901311|gb|EEP75712.1| chromatin remodelling complex ATPase chain ISW1 [Uncinocarpus
           reesii 1704]
          Length = 994

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 306 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 365

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ +++  K   + +++    +  L  L+                   +  
Sbjct: 366 VDNAGKMVILDKLLKRLKVQGSRVLIFSQMSRVLDILEDYCVFREHAYCRIDGSTAHEDR 425

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 426 IAAIDEYNRPGSEKFVFLLTTRAGGLGINLTT-ADIVILYDSDWNPQA-----DLQAMDR 479

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 480 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 525


>gi|195501119|ref|XP_002097666.1| GE24355 [Drosophila yakuba]
 gi|194183767|gb|EDW97378.1| GE24355 [Drosophila yakuba]
          Length = 1925

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 76/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1610 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1669

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1670 ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1729

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             ++                       +    +  +N +  I +L       G GLNL  G
Sbjct: 1730 IVEHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1788

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1789 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1843

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1844 LTANTVVSAENA 1855


>gi|226293396|gb|EEH48816.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb18]
          Length = 863

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 565 LKAIGILKKLCNHPDLLNLGADLPGCEQFFPDDYIPIESRGRDRDVRSWYSGKMMVLDRM 624

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+ + 
Sbjct: 625 LARIRQDTNDKIVLISNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDPEG 684

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 685 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 738

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 739 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 770


>gi|156545320|ref|XP_001605650.1| PREDICTED: similar to chromodomain helicase DNA binding protein
            [Nasonia vitripennis]
          Length = 1997

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD---------EEKHWKEV 51
            K Y       +  L      +  +  +  +   +  N    +             +++  
Sbjct: 965  KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGNYETS 1024

Query: 52   HDEKIKALEVIIEKA------NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
               K     V++ +       +   +++       L              +      T  
Sbjct: 1025 ALIKAAGKLVLLSRMLKKLRDDGHRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGNITGT 1084

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1085 QRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1138

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1139 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1180


>gi|327288760|ref|XP_003229093.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Anolis
            carolinensis]
          Length = 2059

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1052 KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1111

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1112 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1171

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1172 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1225

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1226 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1267


>gi|321469421|gb|EFX80401.1| hypothetical protein DAPPUDRAFT_318579 [Daphnia pulex]
          Length = 1037

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASKT---------VKCLQLANGAVYY------ 42
           +K Y    K QRE+Y  +   +I+  N A K          ++  +  N    +      
Sbjct: 366 VKVYIGLSKMQREMYTKILMRDIDIVNGAGKLEKMRLQNILMQLRKCCNHPYLFDGAEPG 425

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K  A  + +++       L  L+             
Sbjct: 426 PPYTTDEHIVYNCGKMVILDKLLPKLKAQGSRVLIFSQMTRMLDILEDYSLWRGYNYCRL 485

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     I+E+N              + G G+NL    +++V F   W+ +    
Sbjct: 486 DGSTPHEDRHRQIEEYNAPDSKKFLFMLSTRAGGLGINL-ATADVVVLFDSDWNPQ---- 540

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+  I  NT++E ++++   K  +  L++   +
Sbjct: 541 -MDLQAMDRAHRIGQLKQVRVFRFITDNTVEEKIVEKAEVKLRLDKLVIQQGR 592


>gi|297304754|ref|XP_002806437.1| PREDICTED: probable global transcription activator SNF2L1-like
           [Macaca mulatta]
 gi|119632241|gb|EAX11836.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1, isoform CRA_d [Homo
           sapiens]
 gi|219520696|gb|AAI43955.1| SMARCA1 protein [Homo sapiens]
          Length = 1070

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|73998082|ref|XP_859465.1| PREDICTED: similar to helicase, lymphoid-specific isoform 9 [Canis
           familiaris]
          Length = 692

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 63/193 (32%), Gaps = 28/193 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHD---------EKIKALEVIIEKAN--AAPIIVAYHF 77
            +   +  N     +                    K   L+ ++ +       +++    
Sbjct: 506 MMLLRKCCNHPYLIEYPIDPLPPFSIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQM 565

Query: 78  NSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
              L  L                  +  +    +  +N +  + +      + G G+NL 
Sbjct: 566 TRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINLT 625

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R   
Sbjct: 626 A-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 679

Query: 187 KSTIQDLLLNALK 199
           K  ++ L+++  K
Sbjct: 680 KRKLEKLIIHKSK 692


>gi|154277928|ref|XP_001539795.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
 gi|150413380|gb|EDN08763.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           NAm1]
          Length = 684

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 23/191 (12%)

Query: 26  ASKTVKCLQLANGAVYYD-----EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
                   +L N     +              D                 I++  ++   
Sbjct: 407 LKAIGILKKLCNHPDLLNLGADLPGSEQILPDDYVSLESRGRDRDDTNDKIVLISNYTQT 466

Query: 81  LARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYG 128
           L   ++                 + K    + ++N+      +      + G G+NL  G
Sbjct: 467 LDLFERLCRTRRYGCLRLDGTMNVTKRQKLVDKFNDPNGEEFVFLLSSKAGGCGINL-IG 525

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N LV F   W+    Q       + R  + G K+  FVY  IA  TI+E + QR   K 
Sbjct: 526 ANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQ 580

Query: 189 TIQDLLLNALK 199
           ++   ++++ +
Sbjct: 581 SLSSCVVDSAE 591


>gi|7384851|dbj|BAA93079.1| Rad54 homolog [Neurospora crassa]
          Length = 834

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W     + +  +
Sbjct: 520 LKAINILKKLCNHPDLLDLSADLPGCEQYWPEDYVPKEARGRDRDVKPWYSGKMQVLDRM 579

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L   ++                 ++K    + ++N+ + 
Sbjct: 580 LARIRADTNDKIVLISNYTQTLDLFERLCRNRQYGCLRLDGTMNVNKRQKLVDKFNDPEG 639

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 640 DEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 693

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 694 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 725


>gi|331227507|ref|XP_003326422.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309305412|gb|EFP82003.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 939

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 41/211 (19%)

Query: 26  ASKTVKCLQLANGAVY------------YDEEKHWKEVH--------DEKIKALEVIIEK 65
                   +L N                Y  + +  +            K+  LE  + K
Sbjct: 649 LKMLGILRKLCNHPDLLDLQQDIPGSEKYFPDGYRSKDPRAPARPELSGKMTVLERFLHK 708

Query: 66  ANA---APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-- 110
                   I++  +F   L  ++K   +             + K    +  +N+ +    
Sbjct: 709 IKTETTDKIVLISNFTQTLDVMEKMCRERRWGNLRLDGTMQITKRQKLVDRFNDPEGKEF 768

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N L+ F   W+    Q       + R  + G K+  FVY  
Sbjct: 769 IFLLSSKAGGCGINL-IGANRLILFDPDWNPASDQ-----QALARVWRDGQKKNCFVYRF 822

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           I   +++E V QR   K  +   +++  + E
Sbjct: 823 ILTGSVEEKVFQRQSQKMKLSASVVDEQEDE 853


>gi|73946625|ref|XP_860020.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 11 [Canis familiaris]
          Length = 1547

 Score = 97.9 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 31/220 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWK-----EV 51
             Y   Q +      G   +           +  ++  ++ N    +   + W+       
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEMWEVSAELYR 1022

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
               K + L+ I+ K  A    +++     S +  ++  F                +    
Sbjct: 1023 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1082

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++NE      +      + G GLNLQ   + +V F   W+  +     +     R  
Sbjct: 1083 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQDRAH 1136

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|330798162|ref|XP_003287124.1| hypothetical protein DICPUDRAFT_87450 [Dictyostelium purpureum]
 gi|325082902|gb|EGC36370.1| hypothetical protein DICPUDRAFT_87450 [Dictyostelium purpureum]
          Length = 521

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
            +Y           D  +  L  +++    +  ++   + S L  ++             
Sbjct: 341 PIYDSSNWKSSTKIDSLLDELNKVLKNEPDSKCLIFSQWTSMLDLIEIPLNINSMPFVRL 400

Query: 93  ----TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +    I+ +  E  I +      + G GLNL    + +     WW+    +Q 
Sbjct: 401 DGKIPQKQREVAIKRFKEEPSIKIFLISIKAGGLGLNL-VVASHVFLCDPWWNPATEEQA 459

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I+R+      + G  + V V     +++I+E +L+  ++K  +    L  +KK+ 
Sbjct: 460 IDRV-----YRIGQNKNVNVIRFFIKDSIEEKILELQKSKKDLAKEAL-TMKKQP 508



 Score = 37.8 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 5/60 (8%), Positives = 13/60 (21%), Gaps = 6/60 (10%)

Query: 2  KQYHKFQREL-----YCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
          K Y    +            G  +    +     ++  Q  N      + +     +   
Sbjct: 13 KMYQDLWKSAKSRFNILFQNGSLLKNYAHVLEMLLRLRQACNHPFLALKNQSGAGSNSLM 72


>gi|297737012|emb|CBI26213.3| unnamed protein product [Vitis vinifera]
          Length = 1110

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIK 57
           YH+        L   + ++ +  + +++  +  N    +  + +  +          K +
Sbjct: 654 YHQVTDLGRVGLDTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNIWQKKEEMVRASGKFE 713

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            L+ ++ K       +++       +  L+                   ++    ++++N
Sbjct: 714 LLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTKLKQFN 773

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 774 APDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 827

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 828 EVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 861


>gi|126344594|ref|XP_001379453.1| PREDICTED: similar to Snf2-related CBP activator protein,, partial
            [Monodelphis domestica]
          Length = 3130

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 70/179 (39%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP 89
              ++         +    +    K++ L V++   KA A  +++       L  L++   
Sbjct: 2041 LHRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRRLKAGAHRVLIFTQMTRMLDVLEQFLT 2100

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                L           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 2101 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLT-GADTVIFYDSD 2159

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 2160 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEG 2213


>gi|114558334|ref|XP_001157776.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
          Length = 783

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 175 RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 234

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 235 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 294

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 295 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 348

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 349 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 383


>gi|68164076|gb|AAY87153.1| ciprofibrate bound protein p240 isoform PRIC320-2 [Homo sapiens]
          Length = 1995

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 222 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 281

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 282 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 341

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 342 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 399 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 455


>gi|256072060|ref|XP_002572355.1| helicase [Schistosoma mansoni]
 gi|238657512|emb|CAZ28586.1| helicase, putative [Schistosoma mansoni]
          Length = 1016

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 82/233 (35%), Gaps = 41/233 (17%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS----------ASKTVKCLQLANGAVYYD----- 43
           K Y    K QR+LY  +  ++I+  NS           +  ++  +  N    +D     
Sbjct: 340 KIYIGLSKMQRDLYTKILMKDIDVVNSVGNKVDRLRLLNILMQLRKCCNHPYLFDGLEPG 399

Query: 44  -----EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                +           +    +   K   + +++       +  L+             
Sbjct: 400 PPFTTDHHLVDNCGKLMLLDKLLPKLKQQGSRVLLFCQMTRMMDILEDYCLWRGHEYFRL 459

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++   +I E+N              + G G+NL    ++++ +   W+ +    
Sbjct: 460 DGSTPHEERQISIDEYNRPGSTKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ---- 514

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++   + R  + G  + V V+ LI ++T++E ++ R   K  + +L++   +
Sbjct: 515 -VDLQAMDRAHRIGQTKTVRVFRLITEHTVEERIIMRAEMKLKLDNLVIQQGR 566


>gi|198455729|ref|XP_001357539.2| GA21216 [Drosophila pseudoobscura pseudoobscura]
 gi|198135371|gb|EAL24661.2| GA21216 [Drosophila pseudoobscura pseudoobscura]
          Length = 1035

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 375 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 434

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 435 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWKNYNYCRLDGQTPHED 494

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 495 RNRQIQEYNMENSTKFVFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 549 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 593


>gi|171683845|ref|XP_001906864.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941883|emb|CAP67535.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1062

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 58/178 (32%), Gaps = 20/178 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA------------RLQ 85
              Y            K+  +  +++         I+   + S L             R  
Sbjct: 871  RRYMHYLRDNWEDSAKVTQVIELLKTIQETNEKTIIFSQWTSLLDLIECQIKYSLKLRHC 930

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +         +D          +  ++     +   GLNL    + ++    +W+     
Sbjct: 931  RYTGDMSRTHRDEAVQDFVENPENKVMLVSLRAGNAGLNLT-CASRVIICDPFWNP---- 985

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              IE   V R  + G ++ V V+ ++ + T+++ ++     K  + +  L+  K + +
Sbjct: 986  -FIEMQAVDRAHRIGQQKEVQVHRILVKETVEDRIMDLQEKKRELVESALDEDKSKQL 1042



 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 3/44 (6%), Positives = 7/44 (15%), Gaps = 6/44 (13%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVY 41
           Y   +               +     N     ++  Q       
Sbjct: 593 YKDLEERSQVVFNKYLRAGTVGRNYSNILVLLLRLRQACCHPHL 636


>gi|290878263|emb|CBK39322.1| Isw1p [Saccharomyces cerevisiae EC1118]
          Length = 1069

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 379 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 438

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 439 YNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 498

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 499 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 552

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 553 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 601


>gi|224064310|ref|XP_002193588.1| PREDICTED: chromodomain helicase DNA binding protein 9 [Taeniopygia
           guttata]
          Length = 2346

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 578 KYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNP 637

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 638 SAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 697

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 698 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 754

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY LI +N+ +  +  R   K  +   +L ++      V
Sbjct: 755 ---DLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSV 811


>gi|148675685|gb|EDL07632.1| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 67/241 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 888  STVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPT 947

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I +   +   ++   + S L         
Sbjct: 948  VSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKK 1007

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1008 NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1066

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+  +
Sbjct: 1067 NPSLEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121

Query: 200  K 200
             
Sbjct: 1122 G 1122


>gi|123296349|emb|CAI26225.2| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1139

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 67/241 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 889  STVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPT 948

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I +   +   ++   + S L         
Sbjct: 949  VSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKK 1008

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1009 NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1067

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+  +
Sbjct: 1068 NPSLEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1122

Query: 200  K 200
             
Sbjct: 1123 G 1123


>gi|56611125|gb|AAH87733.1| Transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 67/241 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 888  STVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPT 947

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I +   +   ++   + S L         
Sbjct: 948  VSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKK 1007

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1008 NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1066

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+  +
Sbjct: 1067 NPSLEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121

Query: 200  K 200
             
Sbjct: 1122 G 1122


>gi|254692909|ref|NP_001013044.2| transcription termination factor 2 [Mus musculus]
 gi|152031718|sp|Q5NC05|TTF2_MOUSE RecName: Full=Transcription termination factor 2; AltName: Full=RNA
            polymerase II termination factor; AltName:
            Full=Transcription release factor 2
 gi|66911227|gb|AAH96625.1| Transcription termination factor, RNA polymerase II [Mus musculus]
 gi|123294595|emb|CAM22070.1| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 1138

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 67/241 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 888  STVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPT 947

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I +   +   ++   + S L         
Sbjct: 948  VSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKK 1007

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1008 NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1066

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G K+ V ++  + + T++E +LQ    K  +   +L+  +
Sbjct: 1067 NPSLEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSE 1121

Query: 200  K 200
             
Sbjct: 1122 G 1122


>gi|316969757|gb|EFV53807.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 527

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 78/224 (34%), Gaps = 35/224 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DE 54
            +  ++L      +   A       +   ++ N      ++    +++            
Sbjct: 278 DEMDKQLLMSYISKKQHA------MMCLRKVTNHPYLLSDKVIDDQINEANKQEVISSSG 331

Query: 55  KIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
           K+  L+ ++    K     +++   F   +  L                  +  +    +
Sbjct: 332 KMIVLDRLLEGLFKEGDHKVLIFTQFVEMIHILSFYCEYRNYKFCSLYGKMSFGERQDEV 391

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             + +G+  +      +   GLNL    + ++ F   W+ +      +     R  + G 
Sbjct: 392 DRFTKGEASVFLISTRAGNLGLNLMA-ADTVILFDSDWNPQ-----CDLQASDRCHRIGQ 445

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + V +Y L+A+ TIDE+++ R ++K  +++      + E + +
Sbjct: 446 TKPVLIYRLVAKGTIDEIMVDRAQSKRKLENASEKLTEAELLEI 489


>gi|51893808|ref|YP_076499.1| SNF2 family helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857497|dbj|BAD41655.1| Snf2 family helicase-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 499

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 26/184 (14%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD-- 80
           + +   +  QL N                 K+  LE  +    A     ++   +     
Sbjct: 300 ALTLLNQLKQLCN--------LDPATGASCKLAFLEQELAPLVARGEKAVIFSQYPKVTL 351

Query: 81  ---LARLQKA----FPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNIL 132
              L RL+      F    +  K    +  +  G    +L     + G G+ L    N +
Sbjct: 352 EPLLPRLEPFGAVLFDGSLSDWKRQLIVHHFQHGDMPRVLAMSLKAGGVGITLTR-ANHV 410

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                WW+    Q         R  + G +R VFV  L+ + T++E + + +  K  +  
Sbjct: 411 YHLDHWWNPAVAQ-----QAEDRTHRIGQRRPVFVTTLLTRGTVEERIAELVERKRELFH 465

Query: 193 LLLN 196
            +++
Sbjct: 466 EVMD 469


>gi|154344042|ref|XP_001567965.1| DNA-dependent ATPase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065299|emb|CAM40727.1| putative DNA-dependent ATPase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1103

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 78/225 (34%), Gaps = 39/225 (17%)

Query: 8   QRELYCDLQGENIEAFNSA--------SKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           QRE Y ++  ++ E  N A        +  +   ++ N     +  +             
Sbjct: 409 QREWYMNVLAKDAEVLNKAGGSVASLTNVMMGLRKVINHPYLMEGGEEGPPFVTDEKLVR 468

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              K+  L+ ++ +          +++   F S L  L+                 +  +
Sbjct: 469 TSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYE 528

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       +      + G G+NLQ   N ++ +   W+ +     ++     
Sbjct: 529 RDSQMASFNSPTSDYFIFLLSTRAGGLGINLQA-ANHVILYDSDWNPQ-----MDLQAQD 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G KR+V VY  +   T++E + +R   K  +  +++   +
Sbjct: 583 RAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGR 627


>gi|195148944|ref|XP_002015422.1| GL11075 [Drosophila persimilis]
 gi|194109269|gb|EDW31312.1| GL11075 [Drosophila persimilis]
          Length = 1033

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 375 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 434

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 435 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWKNYNYCRLDGQTPHED 494

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 495 RNRQIQEYNMENSTKFVFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 549 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 593


>gi|195124267|ref|XP_002006615.1| GI18485 [Drosophila mojavensis]
 gi|193911683|gb|EDW10550.1| GI18485 [Drosophila mojavensis]
          Length = 1020

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 365 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 424

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 425 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 484

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 485 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 538

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 539 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 583


>gi|242089493|ref|XP_002440579.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
 gi|241945864|gb|EES19009.1| hypothetical protein SORBIDRAFT_09g003430 [Sorghum bicolor]
          Length = 1127

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 76/214 (35%), Gaps = 28/214 (13%)

Query: 4   YHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIK 57
           Y +   RE      G   +A  + S  ++  +  N    + E  +  +         K +
Sbjct: 692 YEQVTSREKVALGSGLRSKALQNLS--MQLRKCCNHPYLFVEHYNMYQREEIVRASGKFE 749

Query: 58  ALEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
            L+ ++ K       +++                               ++    + ++N
Sbjct: 750 LLDRLLPKLQRAGHRVLLFSQMTKLLDVLEVYLQMYNFKYMRLDGSTKTEERGRLLADFN 809

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + +  +      + G GLNLQ   + ++ F   W+ +     +++    R  + G K 
Sbjct: 810 KKDSEYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKN 863

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E +L R + K  I   ++ A
Sbjct: 864 EVRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQA 897


>gi|323310031|gb|EGA63226.1| Isw1p [Saccharomyces cerevisiae FostersO]
          Length = 1069

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 379 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 438

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 439 YNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 498

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 499 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 552

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 553 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 601


>gi|310779269|ref|YP_003967602.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
 gi|309748592|gb|ADO83254.1| SNF2-related protein [Ilyobacter polytropus DSM 2926]
          Length = 920

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 27/213 (12%)

Query: 2   KQYHKFQRELYC----DLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y      ++   I            +  QLA+      E K    V   K
Sbjct: 699 KIYDERRLFYYDLIHNQIKEHGIGKSQIFILQALNELRQLAS----CPEMKTEGLVSSTK 754

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEW 104
            + L   I +   N   I++  +F           D   ++  +  G T D+     +  
Sbjct: 755 REILIENIREAVDNGHKILIFTNFIRSIENICEDLDKHNIKHLYMTGATKDRQSLVEKFQ 814

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ K  +      + G GLNL    + +  +  WW+     +  E   V R  + G  R 
Sbjct: 815 NDKKCKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTAEDQAVDRSHRMGQDRT 868

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y LI + TI+E +L+    KS + + L+++
Sbjct: 869 VFSYKLITKGTIEEKILKLQEEKSRLFEKLISS 901


>gi|168056923|ref|XP_001780467.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162668143|gb|EDQ54757.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 698

 Score = 97.9 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
               +   K +AL  ++ +        ++   + + L  L+                  +
Sbjct: 510 DHHALASAKCRALVTLLPQLKKEGHRPLIFSQWTNMLDILEWALDVIGLRFTRLDGSTPV 569

Query: 95  DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    + E+N    I +      + G GLNL  G + ++   + ++ +     ++R   
Sbjct: 570 TERQNLVDEYNNNPDIFVFLLSTRAGGQGLNLT-GADTVIIHDVDFNPQ-----MDRQAE 623

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V VY L+ + T+DE + +  + K  +   +L +
Sbjct: 624 DRCHRIGQTKPVTVYRLVTKGTVDESIFRIAQQKLVLDAAVLES 667


>gi|332024475|gb|EGI64673.1| Putative DNA helicase Ino80 [Acromyrmex echinatior]
          Length = 1115

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            K+  L+ ++   K     +++       +  L++                +  D+    
Sbjct: 565 GKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGSSKISDRRDMV 624

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                   I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 625 ADFQKRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 678

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 679 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 715


>gi|149636100|ref|XP_001509337.1| PREDICTED: similar to chromodomain helicase DNA binding protein 6
            [Ornithorhynchus anatinus]
          Length = 2613

 Score = 97.5 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 42/237 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y     + +  L          N  +  ++  +  N     +  +        K  + 
Sbjct: 853  KYYRAILEKNFSFLAKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 912

Query: 60   EVIIEKAN----------------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
            + +  +                           +++       L          R   + 
Sbjct: 913  DALDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDXXXSFGFPTRYTYER 972

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 973  IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1029

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 1030 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 1083


>gi|293418289|gb|ABY48151.3| Mot1 [Triticum monococcum subsp. aegilopoides]
          Length = 2069

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 67/261 (25%)

Query: 1    MKQYHKF----QRELYCDLQGENIE---------AFNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF     +E    +   +             +        L+L +  +    E  
Sbjct: 1737 LKLYDKFSSSNVKEEISTIVKADESEPSTSQPKATRHVFQALQYLLKLCSHPLLVIGESP 1796

Query: 48   WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
             + +                   H  K+ AL+ I+++                    +++
Sbjct: 1797 PEYIVEHLKEIGMGTGDELHELHHSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLI 1856

Query: 74   AYHFNSDLARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASC 119
                 + L  ++K   Q                 DK    ++ +N +  I +L       
Sbjct: 1857 FAQHKAFLDIIEKDLFQSHMRSVTYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVG 1916

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 1917 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 1970

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            V+   R K ++ + ++N+   
Sbjct: 1971 VMSLQRFKVSVANAVINSENA 1991


>gi|254569384|ref|XP_002491802.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
 gi|238031599|emb|CAY69522.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
          Length = 1061

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 84/227 (37%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAF-----------NSASKTVKCLQLANGAVYYDEEK-------- 46
             QR+ Y  +  ++I+A               +  ++  +  N    ++  +        
Sbjct: 399 DMQRQWYQKILEKDIDAVVSSSGKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTD 458

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------L 94
                + +K+K L+ +++  K   + +++    +  L  L+                   
Sbjct: 459 EHLVFNAQKMKVLDKLLKRKKEQGSRVLIFSQMSRMLDILEDYCNFREYGYCRIDGQTDH 518

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I ++N  +    +      + G G+NL    + ++ +   W+ +      +   
Sbjct: 519 SDRIDAIDDYNRKDSDKFVFLLTTRAGGLGINLTS-ADTVILYDSDWNPQA-----DLQA 572

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G  + V+VY L+ +N I+E VL+R + K  +  L++   +
Sbjct: 573 MDRAHRIGQTKQVYVYRLVTENAIEEKVLERAQQKLRLDQLVIQQGR 619


>gi|326431585|gb|EGD77155.1| CHD1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1497

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 44/234 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEA---------FNSA-SKTVKCLQLANGAVYYDEEKHWKEV 51
           + Y   +         E              ++  +  ++  +L N    + E +     
Sbjct: 720 QLYKHMKEHGVLLTGDEAKSKSGHHHKKRTVHALRNTLMQLRKLCNHPFLFKEIEVAYAR 779

Query: 52  HDEKIKALEVIIEKANA----------------APIIVAYHFNSDLARLQKAF------- 88
           H       +  + +A+                   +++       L  L+  F       
Sbjct: 780 HRSLQYVHDEDLWRASGKLELLTRMLPKFKASKHKVLLFSQMTQLLTILEDFFTAIGLTY 839

Query: 89  ---PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                G + ++    ++E+N    +I +      + G GLNLQ   + ++ F   W+  +
Sbjct: 840 IRLDGGTSDEERGRQVKEFNSPDSQIDVFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQ 898

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +     R  + G K  V V+ L + N+++E +L+  R K  + + ++ A
Sbjct: 899 -----DLQAQDRAHRIGQKNEVRVFRLCSINSVEETILEAARFKLNVDEKVIQA 947


>gi|301165746|emb|CBW25318.1| putative helicase [Bacteriovorax marinus SJ]
          Length = 1049

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 19/184 (10%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN--- 78
                  ++  Q            ++K +   KI+ L   +E+        IV   F    
Sbjct: 851  EILKGLLQLRQSCLWQSPTAGL-NYKNIASTKIEFLVEQLEQIIEEGHQTIVFSQFTTYL 909

Query: 79   -------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                   SD           +++ K    + ++  GK  +      + G GLNL    + 
Sbjct: 910  DLIQNTLSDKHWRLSRIDGSQSIKKRQQQVDDFQSGKSDVFLISLKAGGVGLNLTA-ASY 968

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +     WW+       +E   + R  + G +  + VY  I +++++E VL+    K  + 
Sbjct: 969  VFIMDPWWNPA-----VESQAIDRAHRIGQQNTLTVYRPIIKDSVEEKVLKLQEMKKQLF 1023

Query: 192  DLLL 195
              LL
Sbjct: 1024 KDLL 1027


>gi|261860470|dbj|BAI46757.1| chromodomain helicase DNA binding protein 9 [synthetic construct]
          Length = 2012

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 222 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 281

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 282 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 341

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 342 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 399 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 455


>gi|73946627|ref|XP_860059.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 12 [Canis familiaris]
          Length = 1549

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 33/222 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVHD--- 53
             Y   Q +      G   +           +  ++  ++ N    +   +          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEDVLPPKSVAL 1022

Query: 54   ----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
                 K + L+ I+ K  A    +++     S +  ++  F                +  
Sbjct: 1023 YRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDR 1082

Query: 98   PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++++NE      +      + G GLNLQ   + +V F   W+  +     +     R
Sbjct: 1083 AALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQDR 1136

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1178


>gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis
            carolinensis]
          Length = 2471

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 43/237 (18%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVY-----------YDEEKHW 48
            K Y     + +  L     +    N  +  ++  +  N               + +  H 
Sbjct: 1038 KYYRAILEKNFNFLSKGAGHSNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFRDSCHH 1097

Query: 49   KEVH----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
               H            K+  ++ ++ K       +++       L  L+    Q R L +
Sbjct: 1098 HVPHDFPLQAMVRSSGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQKRYLYE 1157

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL    +  + F   W+ +  
Sbjct: 1158 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN- 1215

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1216 ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1268


>gi|301766462|ref|XP_002918636.1| PREDICTED: probable global transcription activator SNF2L1-like
           isoform 1 [Ailuropoda melanoleuca]
          Length = 1054

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LNALK 199
           +   +
Sbjct: 647 IQQGR 651


>gi|301107063|ref|XP_002902614.1| chromodomain protein, putative [Phytophthora infestans T30-4]
 gi|262098488|gb|EEY56540.1| chromodomain protein, putative [Phytophthora infestans T30-4]
          Length = 1748

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 34/223 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVH------ 52
            K Y          L  G      N  +  ++  +  N        E+K            
Sbjct: 982  KYYRAIFERNRQFLNMGATGTVANLVNVEMELRKCCNHPFLIRGVEDKECVGFDEQLRMK 1041

Query: 53   -----DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K   L+ ++   +     +++   F   L  ++          +         
Sbjct: 1042 ILIQASGKTVLLDKLLTKFRQENKKVLIFSQFKIMLDIIEDMCQLRGYSMERLDGSVRGN 1101

Query: 98   --PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    ++++ F   W+ +      +   V
Sbjct: 1102 SRQAAIDRFNSPDSDTFAFLLSTRAGGVGINL-IAASVVILFDSDWNPQN-----DLQAV 1155

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G  ++V +Y L+ + T +  + +    K  +   +  
Sbjct: 1156 ARCHRIGQTQSVNIYRLVTKKTYEAQMFEIASKKLGMHHAVFE 1198


>gi|156845729|ref|XP_001645754.1| hypothetical protein Kpol_1010p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116422|gb|EDO17896.1| hypothetical protein Kpol_1010p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 661

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
           + QR+ Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 384 QMQRKWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 443

Query: 47  HWKEVHDEKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+      +   K + + +++    +  L  L+                 + 
Sbjct: 444 EHLVFNSGKMIILDKLLKKLKESGSRVLIFSQMSRLLDILEDYCYFRGYNYCRIDGSTSH 503

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+NE      +      + G G+NL    + +V +   W+ +      +   
Sbjct: 504 EERIEAIDEYNEPDSDKFVFLLTTRAGGLGINLVT-ADTVVLYDSDWNPQA-----DLQA 557

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 558 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 601


>gi|150866895|ref|XP_001386641.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
 gi|149388151|gb|ABN68612.2| Nuclear protein STH1/NPS1 (Chromatin structure remodeling complex
           protein STH1) (SNF2 homolog) [Scheffersomyces stipitis
           CBS 6054]
          Length = 1259

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            Y +  +     +  +   A +       K ++  ++ N    ++E +    ++  K+  
Sbjct: 734 LYQQMLKHNAFFVGADAGGAKSGIKGLNNKIMQLRKICNHPFVFEEVEAV--LNSSKLTN 791

Query: 59  LEVI--------------IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
             +                 KA+   +++ +     +  ++                   
Sbjct: 792 DLIWRTSGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRWRDMKYLRLDGSTKA 851

Query: 95  DKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +N              + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 852 EDRQEMLKVFNAPNSDYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQA 905

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G K  V +  LI  ++++E++L+R   K  I   ++ A K
Sbjct: 906 QDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGK 952


>gi|242045708|ref|XP_002460725.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
 gi|241924102|gb|EER97246.1| hypothetical protein SORBIDRAFT_02g033850 [Sorghum bicolor]
          Length = 614

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 79/227 (34%), Gaps = 33/227 (14%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
           + Y     + Y  L+  G+     +  +  ++  ++ N          E    + +HD +
Sbjct: 225 EYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIPGTEPESGSPEFLHDMR 284

Query: 56  IK--------ALEVIIEKANAAPIIVAYHFNSDLARLQKA------------FPQGRTLD 95
           IK           + I       +++       L  L+                   ++ 
Sbjct: 285 IKASAKLALLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLTLEFGPKTFERVDGSVSVA 344

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 345 ERQAAIARFNQDKTRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 398

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G    + VY L+ + +++E +LQ  + K  +  L +N  + +
Sbjct: 399 RAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSESQ 445


>gi|119194699|ref|XP_001247953.1| hypothetical protein CIMG_01724 [Coccidioides immitis RS]
          Length = 846

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 486 LKAIGILKKLCNHPDLLNLSADLPGSEQFFPDDYVPPEGRGRDRDVKSWYSGKMMVLDRM 545

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T+ K    +  +N+   
Sbjct: 546 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMTVKKRQKLVDRFNDPDG 605

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 606 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 659

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K  +   ++++ +
Sbjct: 660 YRFIATGSIEEKIFQRQSHKQLLSSCVVDSAE 691


>gi|73946629|ref|XP_860094.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 13 [Canis familiaris]
          Length = 1550

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKH-WKEVH----- 52
             Y   Q +      G   +    A    +  ++  ++ N    +   +  +  VH     
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGGAKTLMNTIMQLRKICNHPYMFQHIEDIFCPVHHEKST 1022

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ I+ K  A    +++     S +  ++  F                + 
Sbjct: 1023 LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSED 1082

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++++NE      +      + G GLNLQ   + +V F   W+  +     +     
Sbjct: 1083 RAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQD 1136

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1179


>gi|67474889|ref|XP_653178.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
            HM-1:IMSS]
 gi|56470108|gb|EAL47792.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
            histolytica HM-1:IMSS]
          Length = 1641

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 34/223 (15%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     +    L    +     +  +  ++  ++ N        +  +          
Sbjct: 898  KYYRALYDKNREFLNKGCVGSNVPHLQNLMIQLRKVCNHPFLIPGVEEKEIANPDDPESY 957

Query: 51   -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                     K+  L+ ++ K N     +++       L  L+K     +   +       
Sbjct: 958  AQELIKSSGKMVLLDKLLPKLNADGHKVLIFSQLKGVLDILEKYLSYKKYTYERLDGSVR 1017

Query: 98   ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   I  + +G+  +      + G G+NL    + ++ +   W+ +      +    
Sbjct: 1018 SNDRQNAIDRFMKGERFVFLLCTRAGGIGINL-SEADTVIIYDSDWNPQN-----DLQAQ 1071

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+ V VY L+++NT +  + +R   K  +   +L+
Sbjct: 1072 ARCHRIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAILS 1114


>gi|293417053|gb|ACU00616.1| Mot1 protein [Triticum monococcum subsp. monococcum]
          Length = 2069

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 67/261 (25%)

Query: 1    MKQYHKF----QRELYCDLQGENIE---------AFNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF     +E    +   +             +        L+L +  +    E  
Sbjct: 1737 LKLYDKFSSSNVKEEISTIVKADESEPSTSQPKATRHVFQALQYLLKLCSHPLLVIGESP 1796

Query: 48   WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
             + +                   H  K+ AL+ I+++                    +++
Sbjct: 1797 PEYIVEHLKEIGMGTGDELHELHHSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLI 1856

Query: 74   AYHFNSDLARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASC 119
                 + L  ++K   Q                 DK    ++ +N +  I +L       
Sbjct: 1857 FAQHKAFLDIIEKDLFQSHMRSVTYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVG 1916

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 1917 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 1970

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            V+   R K ++ + ++N+   
Sbjct: 1971 VMSLQRFKVSVANAVINSENA 1991


>gi|320586895|gb|EFW99558.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1541

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 31/214 (14%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-----------EVHD 53
             K  R L  ++    +   +      +     +    +   + ++            +  
Sbjct: 953  EKMARILMAEVPQSELRQPDLKHLISELRD-CSDFELHTWCRDYRCIRKFDFPDDLFLQS 1011

Query: 54   EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTI 101
             K++ L  ++   + N    +V   F   L  L++                 +++    I
Sbjct: 1012 GKVQELLRLVQKFQKNGDRALVFTRFARVLNILRECMTTSGLDYVSLEGATRVEERQAII 1071

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             E+N    IP+      S G G+NL    N ++ F    + ++     +     R  + G
Sbjct: 1072 DEFNGNADIPVFLLTTGSGGTGINLTA-ANKVIIFDQSDNPQD-----DVQAENRAHRLG 1125

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R V V  L+ + TI+ELV +  +TK  + + +
Sbjct: 1126 QTRDVEVIKLVTRGTIEELVYKACQTKLELAERV 1159


>gi|310791634|gb|EFQ27161.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1893

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 76/248 (30%), Gaps = 59/248 (23%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKH--------- 47
            K +  F R+    LQ E          +         +L N      +  H         
Sbjct: 1563 KLFDDFTRKQGKKLQEEAGREDKDAKSHIFQALQYMRKLCNSPAMVMKPGHGMYEETQRI 1622

Query: 48   --------WKEVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLA 82
                       VH  K+ AL  ++                         +V       L 
Sbjct: 1623 LRKQGTSLEDPVHAPKLTALRDLLVDCGIGVEEAESNDPLYQPIKPHRALVFCQMKEMLD 1682

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +Q                  G   +K    + ++N +    +L    +  G GLNL  G
Sbjct: 1683 MVQNTVLKSMLPGVTYLRLDGGVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-G 1741

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++         + R  + G K+ V VY L+ + T++E +L   R K 
Sbjct: 1742 ADTVIFVEHDWNPQKDM-----QAMDRAHRIGQKKVVNVYRLVTRGTLEEKILSLQRFKI 1796

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1797 DVASTVVN 1804


>gi|292496|gb|AAA80559.1| transcription activator [Homo sapiens]
          Length = 976

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 335 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 394

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 395 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 454

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 455 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 513

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 514 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 568

Query: 195 LNALK 199
           +   +
Sbjct: 569 IQQGR 573


>gi|116198517|ref|XP_001225070.1| hypothetical protein CHGG_07414 [Chaetomium globosum CBS 148.51]
 gi|88178693|gb|EAQ86161.1| hypothetical protein CHGG_07414 [Chaetomium globosum CBS 148.51]
          Length = 1727

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1439 DSGKLAKLDELLRQLKEGGHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDRRD 1498

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1499 TVADFQTRPEIFIFLLSTRAGGLGINLTT-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1552

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1553 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1589


>gi|330797032|ref|XP_003286567.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
 gi|325083472|gb|EGC36924.1| hypothetical protein DICPUDRAFT_97424 [Dictyostelium purpureum]
          Length = 1281

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 30/219 (13%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNSASK------TVKCLQLANGAVYYDEEKHWKEV---H 52
            Y          +                      +  ++ N    + EE    E     
Sbjct: 731 MYRSLVEYGVLPVDPDSKEGRAGRLKMKGFNNIVKQLQKICNHPYLFKEEWDINEDLIRS 790

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
             K   ++ I+ K +     +++       +  +++ F                ++    
Sbjct: 791 SGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTYLRLDGSTKPEERAHL 850

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + EWN    P  +      + G G+NLQ   + ++ F   W+ +     ++     R  +
Sbjct: 851 VVEWNRPDSPFWIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRCHR 904

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G   AV VY LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 905 IGQTNAVNVYRLISANSIEEKILERATDKLEIDAKIIQA 943


>gi|293630862|gb|ACU12857.2| Mot1 [Brachypodium distachyon]
          Length = 2067

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 84/261 (32%), Gaps = 67/261 (25%)

Query: 1    MKQYHKFQRELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF      +     + A              +        L+L +  V    E  
Sbjct: 1735 LKLYDKFSSSNAKEEISTIVTANESEQSTSQPKATRHVFQALQYLLKLCSHPVLVIGESP 1794

Query: 48   WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
               +                   H  K+ AL+ I+ +                    +++
Sbjct: 1795 PDYLVDHLKDIRMGSGDDLHDLHHSPKLVALQEILHECGIGSEISSPDASAAVGQHRVLI 1854

Query: 74   AYHFNSDLARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASC 119
                 + L  ++K   Q                 +K    ++ +N +  I +L       
Sbjct: 1855 FAQHKAFLDIIEKDLFQSHMRSVTYLRLDGSVQTEKRFEIVKSFNSDPTIDVLLLTTHVG 1914

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+      M +   + R  + G K+ V V+ LI + T++E 
Sbjct: 1915 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEK 1968

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            V+   R K ++ + ++NA   
Sbjct: 1969 VMSLQRFKVSVANAVINAENA 1989


>gi|281345379|gb|EFB20963.1| hypothetical protein PANDA_019836 [Ailuropoda melanoleuca]
          Length = 834

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 72/214 (33%), Gaps = 25/214 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 246 KYYKAILMKDLDAFENEMAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASG 305

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 306 KLYLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 365

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  + +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 366 NFGQQPVFIFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 419

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++V V  LI ++T++E+V ++  +K  + + ++ 
Sbjct: 420 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 453


>gi|261198639|ref|XP_002625721.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis
           SLH14081]
 gi|239594873|gb|EEQ77454.1| SNF2 family helicase/ATPase PasG [Ajellomyces dermatitidis
           SLH14081]
          Length = 862

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIK 57
           K ++     L  + I +    +  ++     N    +         H          K+ 
Sbjct: 559 KIEKTKTAQLAKKEIASKKLQNPVMQARLACNSPHNFYWPWDDDPSHIDESLITSSGKML 618

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEW 104
            L+ +I    +    I++   F + L                      +       IQ +
Sbjct: 619 LLDGLIPCLMSKGHKILIFSQFKTQLDLLQDYATYLRGWNCCRIDGAVSQVDRQAQIQAF 678

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N      +      + G G+NL    + ++ F   W+ ++     +     R  + G  +
Sbjct: 679 NTNQDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTK 732

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 733 PVIVYRLATRGTVEQTLLEKADSKRRLEKLVIQKGKFKSL 772


>gi|242791140|ref|XP_002481699.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|242791145|ref|XP_002481700.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718287|gb|EED17707.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718288|gb|EED17708.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1118

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 426 VKWYQKILEKDIDAVNGAAGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 485

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L  L+                   +  
Sbjct: 486 IDNSGKMVVLDKILNRMKKQGSRVLIFSQMSRVLDILEDYCVFREHKYCRIDGSTAHEDR 545

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 546 IAAIDEYNREGSDKFIFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V V+  + ++ I+E VL+R   K  +  L++   +
Sbjct: 600 AHRIGQKKQVVVFRFVTEHAIEEKVLERAAQKLRLDQLVIQQGR 643


>gi|194210904|ref|XP_001497220.2| PREDICTED: similar to Chromodomain helicase DNA binding protein
           1-like isoform 1 [Equus caballus]
          Length = 1006

 Score = 97.5 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 402 KYYKAILMKDLDAFENETAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASG 461

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    + +  +++       L  LQ                   ++    I+
Sbjct: 462 KLHLLDKLLAFLYSRSHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 521

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 522 NFGQKPIFIFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 575

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + + ++  
Sbjct: 576 KSVKVIRLIGRDTVEEIVCRKAASKLQLTNTIIEG 610


>gi|308501284|ref|XP_003112827.1| CRE-LET-418 protein [Caenorhabditis remanei]
 gi|308267395|gb|EFP11348.1| CRE-LET-418 protein [Caenorhabditis remanei]
          Length = 1884

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  ++  +  N    +               E  
Sbjct: 856  KWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKASLEAPKEKNGMYEGT 915

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                +  K   L+ ++ K       +++       L  ++          +         
Sbjct: 916  ALIKNSGKFALLQKMLRKLKDGGHRVLIFSQMTMMLDIMEDFCDVEGYKYERIDGSITGQ 975

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 976  MRQDAIDRYNAPGAQQFIFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1029

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G K  V +Y  + + +++E +    + K  +  L++ A
Sbjct: 1030 SRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLNHLVVRA 1073


>gi|296236368|ref|XP_002807959.1| PREDICTED: LOW QUALITY PROTEIN: probable global transcription
           activator SNF2L1-like [Callithrix jacchus]
          Length = 1080

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 52/242 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 413 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 533 DGQTPHEEREDKFLEVEFRGQREAIEAFNAPNSSKFIFMLSTRAGGLGINL-ASADVVIL 591

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 592 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646

Query: 195 LN 196
           + 
Sbjct: 647 IQ 648


>gi|6321275|ref|NP_011352.1| Rad54p [Saccharomyces cerevisiae S288c]
 gi|417577|sp|P32863|RAD54_YEAST RecName: Full=DNA repair and recombination protein RAD54
 gi|172343|gb|AAA34949.1| recombination and repair protein [Saccharomyces cerevisiae]
 gi|728692|emb|CAA88534.1| RAD54 [Saccharomyces cerevisiae]
 gi|1322760|emb|CAA96875.1| RAD54 [Saccharomyces cerevisiae]
 gi|285812049|tpg|DAA07949.1| TPA: Rad54p [Saccharomyces cerevisiae S288c]
          Length = 898

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 44/241 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           + Y+K  +        + +             +L N     + E                
Sbjct: 581 ELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYN 640

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
                 +  +  +  K   LE  + K    +   I++  ++   L  ++K          
Sbjct: 641 MPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV 700

Query: 93  ------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    +  +N+ +    +      + G G+NL  G N L+     W+    
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAAD 759

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++A K++   
Sbjct: 760 Q-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA-KEDVER 813

Query: 205 V 205
           +
Sbjct: 814 L 814


>gi|281211035|gb|EFA85201.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2415

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
              Y  +K   +    K++AL  ++   K N    ++   +   L   +            
Sbjct: 1248 SLYFPDKKLIQYDCGKLQALAKLLRNLKTNGHRALIFTQWTRMLDVFESFLNLHGYTYLR 1307

Query: 96   --------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +     + +N + KI L      S G GLNL  G + ++F+   W+      
Sbjct: 1308 LDGSTKVDRRQYLAERFNRDNKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPS---- 1362

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             ++     R  + G  R V +Y LI Q+TI+E +L++   K  + D+++   +
Sbjct: 1363 -MDAQAQDRCHRIGQTREVNIYRLITQHTIEENILRKSNQKRQLDDVVIQGGE 1414


>gi|5911978|emb|CAB55959.1| hypothetical protein [Homo sapiens]
          Length = 1388

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 392 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 451

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 452 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 511

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 512 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 565

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 566 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 607


>gi|71008587|ref|XP_758230.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
 gi|46097848|gb|EAK83081.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
          Length = 870

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 40/211 (18%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------------VHDEKIKA 58
                        +L N     D     +                            ++ 
Sbjct: 576 TGSQPLKAIGILKKLCNHPDLLDLPNDLEGSEEYFPEAYTPRDRRYVNPELSGKMMVLQR 635

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGK 108
               I   +   I++  ++   L   ++                T++K    +  +N+ +
Sbjct: 636 FLETIRATSNDKIVLISNYTQTLDVFERMCRANRWGMFRLDGTMTINKRQKLVDRFNDPE 695

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G GLNL  G N LV F   W+    Q       + R  + G K++ F
Sbjct: 696 GKEFIFLLSSKAGGCGLNL-IGANRLVLFDPDWNPASDQ-----QALARVWRDGQKKSCF 749

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VY  IA  +I+E +LQR   K ++   +++ 
Sbjct: 750 VYRFIATGSIEEKILQRQSHKQSLSSCVVDE 780


>gi|151943650|gb|EDN61960.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 898

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 44/241 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           + Y+K  +        + +             +L N     + E                
Sbjct: 581 ELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYN 640

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
                 +  +  +  K   LE  + K    +   I++  ++   L  ++K          
Sbjct: 641 MPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV 700

Query: 93  ------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    +  +N+ +    +      + G G+NL  G N L+     W+    
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAAD 759

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++A K++   
Sbjct: 760 Q-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA-KEDVER 813

Query: 205 V 205
           +
Sbjct: 814 L 814


>gi|309358145|emb|CAP34504.2| CBR-ISW-1 protein [Caenorhabditis briggsae AF16]
          Length = 1019

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          +   +  N    +      
Sbjct: 366 VKVYVGLSKMQREWYTKILLKDIDVINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 425

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++   +   + +++   F+  L  L+             
Sbjct: 426 PPYTTDQHLVDNCGKMVVLDKLLSRLQEQGSRVLIFSQFSRMLDLLEDYCWWRKYEYCRL 485

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 486 DGSTAHVDRTSAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQS--- 541

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +   + R  + G K+ V V+ LI +NT+D+ ++++   K  + ++++   +
Sbjct: 542 --DLQAMDRAHRIGQKKQVKVFRLITENTVDDRIIEKAEAKLRLDNIVIQQGR 592


>gi|195342153|ref|XP_002037666.1| GM18177 [Drosophila sechellia]
 gi|194132516|gb|EDW54084.1| GM18177 [Drosophila sechellia]
          Length = 717

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 367 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 424

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 425 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 484

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 485 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 539

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 540 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 583


>gi|67609421|ref|XP_666977.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis TU502]
 gi|54658055|gb|EAL36743.1| chromodomain-helicase-DNA-binding protein, CHD-1-related
            [Cryptosporidium hominis]
          Length = 2025

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 72/225 (32%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEK-------------HW 48
             Y       Y +L         S     ++  ++ N        +             H 
Sbjct: 805  MYKSILTRNYDELSKTTGGTKTSLQNICMELKKVCNHPFLIHRPELDPSQGITIASIQHQ 864

Query: 49   KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                  K+  L+ ++ +     + +++       L  + +         +          
Sbjct: 865  LVYGCGKLCLLDKLLSRLREKGSRVLIFSQMVRMLNIISEFLVLRGFRHQRLDGTMGKEL 924

Query: 98   -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G G+NL    + ++ +   W+ +      +     
Sbjct: 925  RKKAMDHFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQN-----DLQAEA 978

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V +Y L+ +++I+E +L+R +TK  +  L++  L 
Sbjct: 979  RAHRIGQKKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGLN 1023


>gi|195539537|ref|NP_001124238.1| DNA repair and recombination protein RAD54-like [Bos taurus]
 gi|119935983|gb|ABM06051.1| RAD54-like protein [Bos taurus]
 gi|296488837|gb|DAA30950.1| RAD54-like [Bos taurus]
          Length = 749

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 45/235 (19%)

Query: 1   MKQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           ++ Y +F R+     +L+   +   + +S T    +L N      ++   +E        
Sbjct: 422 IELYKRFLRQAKPAEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFEGTLD 480

Query: 53  ---------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
                            K+  L+ I+      ++  +++  ++   L   +K        
Sbjct: 481 IFPPGYNSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYL 540

Query: 91  ------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+  
Sbjct: 541 YVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPA 599

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 N-----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 649


>gi|37699520|gb|AAB95091.3| 89B helicase [Drosophila melanogaster]
          Length = 1924

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1609 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1668

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1669 ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1728

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1729 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1787

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1788 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1842

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1843 LTANTVVSAENA 1854


>gi|312371646|gb|EFR19778.1| hypothetical protein AND_21824 [Anopheles darlingi]
          Length = 2134

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 60/255 (23%)

Query: 2    KQYHKFQR---------ELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHW 48
            + Y  F R         E    + G+ +    +  +          + N         H 
Sbjct: 1769 RLYEDFSRMHLHSSDIRECLEHIDGQQMGPANKKTHVFQALRYLQNVCNHPKLVLTPSHP 1828

Query: 49   KEV-----------------HDEKIKALEVIIEKA----------NAAPIIVAYHFNSDL 81
            +                   H  K+  L+ ++             N    ++     + L
Sbjct: 1829 EYKDIVGEFTRNGASMDDIEHSAKLPVLKQLLLDCGIGTNEDVSVNQHRALIFCQLKAML 1888

Query: 82   ARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              L+                            + ++N +  I +L       G GLNL  
Sbjct: 1889 DILENDLLKKHLPAVSYLRLDGSVPPSTRHHIVTKFNGDPSIDVLLLTTQVGGLGLNLT- 1947

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+      M +   + R  + G K+ V VY LI + +++E ++   + K
Sbjct: 1948 GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRKSLEEKIMGLQKFK 2002

Query: 188  STIQDLLLNALKKET 202
                + +++      
Sbjct: 2003 LQTANTVVSDENASM 2017


>gi|195380477|ref|XP_002048997.1| GJ21347 [Drosophila virilis]
 gi|194143794|gb|EDW60190.1| GJ21347 [Drosophila virilis]
          Length = 1021

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|328856768|gb|EGG05888.1| hypothetical protein MELLADRAFT_36442 [Melampsora larici-populina
           98AG31]
          Length = 878

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                +     +   K+  L+ ++++       +++ +     +  +++           
Sbjct: 645 FMEVPQLEKLMLDSGKLARLDSLLQELKTGGHRVLIYFQMTRMIDLMEEYLSFRHYRYLR 704

Query: 96  ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +    +      +I +      + G G+NL    + ++F+   W+    Q 
Sbjct: 705 LDGSSTISERRDMVMDWQTRPEIFIFLLSTRAGGLGINLTA-ADTVIFYDCDWNPSNDQ- 762

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + R  + G KR V VY LI   TIDE +L+  RTK T+QD ++ +
Sbjct: 763 ----QAMDRAHRLGQKRQVTVYRLITSGTIDERILKLARTKKTVQDAVVGS 809


>gi|194756516|ref|XP_001960523.1| GF13400 [Drosophila ananassae]
 gi|190621821|gb|EDV37345.1| GF13400 [Drosophila ananassae]
          Length = 1027

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 426 LIYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRGYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEYNMDNSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|190407107|gb|EDV10374.1| DNA repair and recombination protein RAD54 [Saccharomyces
           cerevisiae RM11-1a]
          Length = 898

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 44/241 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           + Y+K  +        + +             +L N     + E                
Sbjct: 581 ELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYN 640

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
                 +  +  +  K   LE  + K    +   I++  ++   L  ++K          
Sbjct: 641 MPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV 700

Query: 93  ------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    +  +N+ +    +      + G G+NL  G N L+     W+    
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAAD 759

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++A K++   
Sbjct: 760 Q-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA-KEDVER 813

Query: 205 V 205
           +
Sbjct: 814 L 814


>gi|159487869|ref|XP_001701945.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158281164|gb|EDP06920.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 3251

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 68/180 (37%), Gaps = 22/180 (12%)

Query: 38   GAVYYDEEKHWKE--VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----- 88
                 ++    ++  +   K+K L+ ++ K   N + +++   + + L  L+        
Sbjct: 861  HHKLLEKYILPQDSILSSAKVKQLDELLPKLKENGSRVLLFSQWTTVLDLLEWYLSLRGY 920

Query: 89   -----PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +D+    +  +N    P  +      + G GLNL  G + ++   + ++ 
Sbjct: 921  TYCRLDGSTNVDERLKLVDAFNASDSPYFVFLLSTRAGGQGLNLT-GADTVILHDVDFNP 979

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     I+R    R  + G  R V VY LI + T+D  +      K  +   +L  +  E
Sbjct: 980  Q-----IDRQAEDRAHRLGQTRTVTVYRLITRGTVDSNIQAIAERKLALDHAVLGDVAVE 1034


>gi|119496623|ref|XP_001265085.1| TBP associated factor (Mot1), putative [Neosartorya fischeri NRRL
            181]
 gi|119413247|gb|EAW23188.1| TBP associated factor (Mot1), putative [Neosartorya fischeri NRRL
            181]
          Length = 1920

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 60/249 (24%)

Query: 2    KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++    LQ +       +  +         +L N      +E H +       
Sbjct: 1595 KLFEDFTKKEQKALQDKVGSTEKSDKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQY 1654

Query: 51   -----------VHDEKIKALEVIIEKA------------------NAAPIIVAYHFNSDL 81
                        H  K+ AL  ++                     +    ++       L
Sbjct: 1655 LAAKHSNIRDVAHAPKLSALRDLLIDCGIGVDSPSEGDLSGASYVSPHRALIFCQMKEML 1714

Query: 82   ARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              +Q                       K    +  +N +    +L    +  G GLNL  
Sbjct: 1715 DIVQSEVLKKLLPSVQFLRLDGSVEATKRQDIVNRFNTDPSYDVLLLTTSVGGLGLNLT- 1773

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K
Sbjct: 1774 GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFK 1828

Query: 188  STIQDLLLN 196
              +   ++N
Sbjct: 1829 IDVASTVVN 1837


>gi|115654057|ref|XP_001202164.1| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
 gi|115679178|ref|XP_790055.2| PREDICTED: similar to putative recombination factor GdRad54,
           partial [Strongylocentrotus purpuratus]
          Length = 335

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 82/230 (35%), Gaps = 42/230 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------ 44
            Y ++ + +  + + +     ++ S      +L N      +                  
Sbjct: 15  IYQQYVKAMMKECRMKTQGKVSTLSAITHLKKLCNHPALVYDKCVSSKDGFHDMLQNFPP 74

Query: 45  ---EKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP--------- 89
               K  +     K++ L+ I+   + +++  +++  ++   L   ++            
Sbjct: 75  GYNNKQLRPELSGKMQVLDYILAITKTSSSDKVVLVSNYTQTLDVFEQLCRLRGYLFVRL 134

Query: 90  -QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++ K    +  +N    P  +      + G GLNL  G N LV F   W+      
Sbjct: 135 DGSMSIKKRAKVVDSFNNPNSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN--- 190

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   + R  + G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 191 --DDQAMARVWRDGQKKRCFIYRLLATGTIEEKIFQRQAHKKALSSCVVD 238


>gi|319441078|ref|ZP_07990234.1| putative DNA/RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 1050

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 24/193 (12%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEK--ANAAPIIVAYHFN 78
             +      ++ N   ++  +             K++ L  I+ +       ++V   F 
Sbjct: 794 VLTALTHFKEICNHPAHFSGDGSGIRKDGRHRSGKVERLYRIVAEALEQDRRVLVFTQFP 853

Query: 79  SD-----------LARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQ 126
           S                      G         +  +       ++     + G G+ L 
Sbjct: 854 SFGRMLAPDMEEVFGIEVPMLHGGLNRKARVDLVNRFQSENGPKVMILSTRAGGTGITLT 913

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++++    WW+       +E     R  + G  + V V+ LIA  T+DE +   L  
Sbjct: 914 R-ASVVIHIDRWWNPA-----VEDQATDRAYRIGQGQDVRVHKLIAVGTLDERINDILGA 967

Query: 187 KSTIQDLLLNALK 199
           K  +   +++A +
Sbjct: 968 KRDLAGDVVSAGE 980


>gi|256272233|gb|EEU07224.1| Rad54p [Saccharomyces cerevisiae JAY291]
 gi|259146347|emb|CAY79604.1| Rad54p [Saccharomyces cerevisiae EC1118]
          Length = 898

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 44/241 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           + Y+K  +        + +             +L N     + E                
Sbjct: 581 ELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYN 640

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
                 +  +  +  K   LE  + K    +   I++  ++   L  ++K          
Sbjct: 641 MPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV 700

Query: 93  ------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    +  +N+ +    +      + G G+NL  G N L+     W+    
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAAD 759

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++A K++   
Sbjct: 760 Q-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDA-KEDVER 813

Query: 205 V 205
           +
Sbjct: 814 L 814


>gi|113678140|ref|NP_001038323.1| chromodomain helicase DNA binding protein 4 [Danio rerio]
 gi|94732824|emb|CAK04973.1| novel protein similar to vertebrate chromodomain helicase DNA binding
            protein 4 (CHD4) [Danio rerio]
          Length = 1929

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 969  KYYKFILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAKMPNGMYEGG 1028

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 1029 GLTKSSGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGG 1088

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P  +      + G G+NL    + +V +   W+        +    
Sbjct: 1089 MRQEAIDRFNAPGAPQFVFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HNDIQAF 1142

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1143 SRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVV 1184


>gi|268573820|ref|XP_002641887.1| C. briggsae CBR-ISW-1 protein [Caenorhabditis briggsae]
          Length = 1012

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 85/233 (36%), Gaps = 40/233 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  N A K          +   +  N    +      
Sbjct: 366 VKVYVGLSKMQREWYTKILLKDIDVINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPG 425

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++   +   + +++   F+  L  L+             
Sbjct: 426 PPYTTDQHLVDNCGKMVVLDKLLSRLQEQGSRVLIFSQFSRMLDLLEDYCWWRKYEYCRL 485

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       I+ +N       +      + G G+NL    ++++ +   W+ +    
Sbjct: 486 DGSTAHVDRTSAIEAYNAPDSKKFIFMLTTRAGGLGINL-ATADVVIIYDSDWNPQS--- 541

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +   + R  + G K+ V V+ LI +NT+D+ ++++   K  + ++++   +
Sbjct: 542 --DLQAMDRAHRIGQKKQVKVFRLITENTVDDRIIEKAEAKLRLDNIVIQQGR 592


>gi|310795007|gb|EFQ30468.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 852

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W     + +  +
Sbjct: 558 LKAINILKKLCNHPDLLNIADDLPGSENCYPDDYVPKEARGRDRDIKPWYSGKMQVLDRM 617

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 618 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVNKRQKLVDKFNNPDG 677

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 678 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 731

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 732 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 763


>gi|124802575|ref|XP_001347516.1| Chromodomain-helicase-DNA-binding protein 1 homolog, putative
            [Plasmodium falciparum 3D7]
 gi|23495097|gb|AAN35429.1| Chromodomain-helicase-DNA-binding protein 1 homolog, putative
            [Plasmodium falciparum 3D7]
          Length = 3328

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH------D 53
            ++ Y     + Y  L   +  A NS     ++  ++ N      E     E         
Sbjct: 1553 IEYYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCAEPLDKDEYKERLVYSS 1612

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             KI  LE ++ +       +++       L              +      T +     +
Sbjct: 1613 GKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMTKEMRKKAM 1672

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +N       +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 1673 NHFNSKNSDDFVFLLSTKAGGLGINLTS-ADTVIIYDSDWNPQN-----DLQAGARAHRI 1726

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V +Y L+ +++I++ +L+R + K  +  L++  L K+
Sbjct: 1727 GQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTLVVQGLNKK 1768


>gi|73946653|ref|XP_860507.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 24 [Canis familiaris]
          Length = 1545

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 33/221 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N   Y  +    + +H    
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHP-YMFQHIEMEGIHELLY 1019

Query: 53   --DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K + L+ I+ K  A    +++     S +  ++  F                +   
Sbjct: 1020 RASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA 1079

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++++NE      +      + G GLNLQ   + +V F   W+  +     +     R 
Sbjct: 1080 ALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQDRA 1133

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1134 HRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1174


>gi|325114960|emb|CBZ50516.1| snf2 family N-terminal domain-containing protein, related [Neospora
            caninum Liverpool]
          Length = 1630

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKA 58
             Y + Q +    +    N+      +  ++  ++AN    + +E    E       K + 
Sbjct: 1005 VYKQIQEKGLRTVDQVGNVTKRGFQNTLMQLRKIANHPYLFVDEYLLNEDLVRVAGKFEC 1064

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNE 106
            L+ ++ K       +++       L  + +                 L +    + E+N 
Sbjct: 1065 LDRMLPKLLHFKHKVLIFSQMTQVLDLMAEYMHLRGYKFARLDGSVGLTERKERMAEFNN 1124

Query: 107  GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             ++   +      + G GLNLQ   + ++ F   ++  +     +   + R  + G  + 
Sbjct: 1125 AEVDTMIFMLSTRAGGLGLNLQA-ADTVILFDSDFNPHQ-----DLQAMCRAHRLGQTKQ 1178

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L+  + ++E++L++   K  I  +++ A
Sbjct: 1179 VKVFRLVTISGVEEIILEKANRKLNIDQMVIQA 1211


>gi|320589784|gb|EFX02240.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407]
          Length = 1885

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ K       +++ +     +  +++                    +  
Sbjct: 1602 DSGKLAKLDDLLFKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1661

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + +VF+   W+       I+   + R  +
Sbjct: 1662 TVHDFQTRPEIFIFLLSTRAGGLGINLTS-ADTVVFYDSDWNPT-----IDSQAMDRAHR 1715

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY +I + TI+E + +R   K  +Q +++  
Sbjct: 1716 LGQTRQVTVYRMITRGTIEERIRKRALQKEEVQRVVIQG 1754


>gi|170077237|ref|YP_001733875.1| SNF2 helicase, putative [Synechococcus sp. PCC 7002]
 gi|169884906|gb|ACA98619.1| SNF2 helicase, putative [Synechococcus sp. PCC 7002]
          Length = 1002

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEKIK 57
            Y K   E   +++            +  ++  QL N  V      +          K+ 
Sbjct: 767 LYQKLVDESLAEIENTDGIQRRGLILTLLLRLKQLCNHPVLLQSKPKLGKNFAPRSGKLL 826

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEW 104
            LE ++E+        ++   F+             L +           +        +
Sbjct: 827 RLEEMLEELISEGDRALIFTQFSEWGKLLQPYLQERLGQDVLFLYGATRRETRQQMCDRF 886

Query: 105 NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                  P+      + G GLNL    N +     WW+       +E     R  + G K
Sbjct: 887 QNDPNGPPIFILSLKAGGTGLNLTR-ANHVFHVDRWWNPA-----VEDQATDRAFRIGQK 940

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + V V+  ++  T++E +   + +K  + +  ++
Sbjct: 941 QNVQVHKFVSTGTLEEKISAMIASKKELAEQTVD 974


>gi|224099763|ref|XP_002311608.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851428|gb|EEE88975.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1131

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKA 58
           Y +        LQ  + ++ +  + T++  +  N    +  + +            K + 
Sbjct: 672 YQQVTEMGRVGLQNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYNMWRKDEIMRASGKFEL 731

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
           L+ ++ K +     +++       +  L+                    +    ++++N 
Sbjct: 732 LDRLLPKLHATDHRVLLFSQMTRLMDILEIYLQLHDYKYLRLDGSTKTEERGTLLKKFNA 791

Query: 107 GKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+ 
Sbjct: 792 PDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKKE 845

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 846 VRVFVLVSVGSVEEVILERAKQKKGIDAKVIQA 878


>gi|320582398|gb|EFW96615.1| DNA helicase [Pichia angusta DL-1]
          Length = 1219

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 35/226 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA-----SKTVKCLQLANGAVYYDEEKHWKEVH----- 52
            Y +        +      A  +      +K ++  ++ N    ++E +           
Sbjct: 700 LYKQMLNHNALFVGVGTQGATKTGLRGLNNKIMQLRKVCNHPYVFEEVEDIVNPSRLTTD 759

Query: 53  -----DEKIKALEVIIEKA--NAAPIIVAYHFNS----------DLARLQKAFPQGRTLD 95
                  K + L+ ++ K   +   +++ +                             D
Sbjct: 760 LIWRSSGKFELLDRVLPKFKASGHKVLIFFQMTQVMDIMEDYLRFRDMKYMRLDGSTKAD 819

Query: 96  KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                ++++N              + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 820 DRQDMLKDFNAPDSEYFCFLLSTRAGGLGLNLQT-ADTVIIFDTDWNPHQ-----DLQAQ 873

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K  V +  LI +++++E++L+R   K  I   ++ A K
Sbjct: 874 DRAHRIGQKNEVRILRLITEDSVEEVILERAHQKLDIDGKVIQAGK 919


>gi|297666624|ref|XP_002811619.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Pongo
           abelii]
          Length = 1048

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y     R              +  +  +   +  N    +               +  
Sbjct: 543 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 602

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 603 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 662

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 663 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 716

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 717 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 758


>gi|149745541|ref|XP_001500568.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Equus
           caballus]
          Length = 1057

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LNALK 199
           +   +
Sbjct: 650 IQQGR 654


>gi|114631883|ref|XP_001151005.1| PREDICTED: helicase, lymphoid-specific isoform 6 [Pan troglodytes]
          Length = 882

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 29  TVKCLQLANGAVY--------YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
            +   +  N            +         +  K   L+ ++ +       +++     
Sbjct: 610 MMLLRKCCNHPYLIDFVEPGPFCSIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 669

Query: 79  SDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
           S L  L                  +  +    +  +N + ++ +      + G G+NL  
Sbjct: 670 SMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTA 729

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R   K
Sbjct: 730 -ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK 783

Query: 188 STIQDLLLN 196
             ++ L+++
Sbjct: 784 RKLEKLIIH 792


>gi|119603203|gb|EAW82797.1| chromodomain helicase DNA binding protein 9, isoform CRA_e [Homo
            sapiens]
          Length = 2823

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1050 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1109

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1110 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1169

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1170 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1226

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1227 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1283


>gi|302897485|ref|XP_003047621.1| hypothetical protein NECHADRAFT_72504 [Nectria haematococca mpVI
            77-13-4]
 gi|256728552|gb|EEU41908.1| hypothetical protein NECHADRAFT_72504 [Nectria haematococca mpVI
            77-13-4]
          Length = 1861

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ K  A    +++ +     +  +++                    +  
Sbjct: 1582 DSGKLAKLDDLLFKLKAENHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDRRD 1641

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1642 TVHDFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1695

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1696 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVIQG 1734


>gi|73998072|ref|XP_859283.1| PREDICTED: similar to helicase, lymphoid-specific isoform 4 [Canis
           familiaris]
          Length = 707

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 433 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 492

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 493 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 552

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 553 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 606

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 607 AKRKLEKLIIH 617


>gi|114631887|ref|XP_001151463.1| PREDICTED: helicase, lymphoid-specific isoform 13 [Pan troglodytes]
          Length = 779

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 466 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 525

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 526 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 585

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 586 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 639

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 640 AKRKLEKLIIH 650


>gi|297816734|ref|XP_002876250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322088|gb|EFH52509.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2043

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 85/271 (31%), Gaps = 70/271 (25%)

Query: 1    MKQYHKFQ----RELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYYD 43
            +K Y +F     ++    +   +  A              +        L+L +  +   
Sbjct: 1701 LKLYEQFSGSGAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL 1760

Query: 44   EEKHWKEV----------------------HDEKIKALEVIIEKA--------------- 66
             +K  + V                      H  K+ AL+ I+E+                
Sbjct: 1761 GDKVTEPVASDLSAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSV 1820

Query: 67   NAAPIIVAYHF-------------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
                +++                     +            +K    ++ +N +  I +L
Sbjct: 1821 GQHRVLIFAQHKALLDIIEKDLFQTHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1880

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE-RIGVTRQRQAGFKRAVFVYYLI 171
                   G GLNL    + LVF    W+     Q+ +    + R  + G KR V V+ LI
Sbjct: 1881 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMRDHQVNKLWQAMDRAHRLGQKRVVNVHRLI 1939

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + T++E V+   R K ++ + ++NA     
Sbjct: 1940 MRGTLEEKVMSLQRFKVSVANTVINAENASM 1970


>gi|194901180|ref|XP_001980130.1| GG16968 [Drosophila erecta]
 gi|190651833|gb|EDV49088.1| GG16968 [Drosophila erecta]
          Length = 1925

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1610 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1669

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1670 ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1729

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1730 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1788

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1789 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1843

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1844 LTANTVVSAENA 1855


>gi|123474505|ref|XP_001320435.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121903240|gb|EAY08212.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1497

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 44/234 (18%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     E    L  +    A N+     ++  ++ N        +  +          
Sbjct: 540 KFYRALLSENASTLLEQITGSAANNLQNIAMQLRKVCNHPYLLKNAEDTEVKERMADPAN 599

Query: 52  ---------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
                             K+  +  ++   K     +++       L  +       +  
Sbjct: 600 KGKSRDQIELEGLVESSGKMVFISKLLPRLKEQGHKVLIFSQMVRVLGIISIFLEANQYK 659

Query: 95  DKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +              I  +N + +  +      + G G+NL    N ++ +   W+ + 
Sbjct: 660 YERLDGSVNDNDRQAAIDRFNQDPEAFVFLLSTKAGGVGINLTA-ANTVIIYDSDWNPQN 718

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +     R  + G  + V VY L+ + T +E + +R   K  +  ++L+ 
Sbjct: 719 -----DIQAEARCHRIGQTQKVKVYRLVTRATYEEKMYERASKKLGLDHVVLDG 767


>gi|115891453|ref|XP_781410.2| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
 gi|115930718|ref|XP_001181304.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Strongylocentrotus purpuratus]
          Length = 1335

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 77/220 (35%), Gaps = 29/220 (13%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G      +  +  ++  +  N ++     +   +         
Sbjct: 731 KQYYKFILTRNFKALCKGLKGNTSSFINIMMELKKCCNHSLLIRPPEDESDPDLKYIIRG 790

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++ +       +++       L  L +         +              
Sbjct: 791 SGKLVLLDKLLTRLQERGHRVLIFSQMVRMLDILSEYLQYRHFQHQRLDGSIRGEIRKQA 850

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N              + G GLNL    + ++ F   W+ +      +   + R  +
Sbjct: 851 LDHFNAEGSQDFCFLLSTRAGGLGLNL-ASADTVIIFDSDWNPQN-----DIQAMARAHR 904

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G +R V +Y L+ ++TI+E +++R + K  +  L++  +
Sbjct: 905 IGQRRQVNIYRLVTKDTIEEEIIERAKRKMVLDHLVIQRM 944


>gi|311276917|ref|XP_003135410.1| PREDICTED: probable global transcription activator SNF2L1 [Sus
           scrofa]
          Length = 1073

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LNALK 199
           +   +
Sbjct: 650 IQQGR 654


>gi|297492405|ref|XP_002699560.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a, member 1 [Bos
           taurus]
 gi|296471282|gb|DAA13397.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Bos taurus]
          Length = 1057

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNIPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LNALK 199
           +   +
Sbjct: 650 IQQGR 654


>gi|158261765|dbj|BAF83060.1| unnamed protein product [Homo sapiens]
          Length = 1307

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 1083 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 1142

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  ++        N   I +      + G G+NL    + ++F+   W+  
Sbjct: 1143 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1201

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1202 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 1251


>gi|67538626|ref|XP_663087.1| hypothetical protein AN5483.2 [Aspergillus nidulans FGSC A4]
 gi|40743453|gb|EAA62643.1| hypothetical protein AN5483.2 [Aspergillus nidulans FGSC A4]
 gi|259485068|tpe|CBF81824.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1184

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 34/210 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--- 65
            R+   +L+ E   + N  SK     +L               +   KI+    II     
Sbjct: 970  RKTLAELKKE--ASKNQESKRKYLRRL-----------EKTWITSAKIEKTMEIIRDIER 1016

Query: 66   -ANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
              N   II+   F S L            R ++     +  D++   +   ++    ++ 
Sbjct: 1017 RDNNEKIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKVML 1076

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   GLNL    N ++ F  +W+       +E   V R  + G  R V V+ ++  
Sbjct: 1077 VSLKAGNSGLNLVA-ANHVIIFDPFWNP-----YVEEQAVDRAHRIGQLREVHVHRILVP 1130

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             T+++ +++    K  I D  L+  + + I
Sbjct: 1131 ETVEDRIIELQDKKRAIIDGALDEKESKNI 1160



 Score = 42.0 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 6/51 (11%)

Query: 1   MKQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDEE 45
           ++ Y   + +        L+   +     N     ++  Q         + 
Sbjct: 748 LELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDF 798


>gi|320581375|gb|EFW95596.1| hypothetical protein HPODL_2930 [Pichia angusta DL-1]
          Length = 687

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 76/213 (35%), Gaps = 30/213 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKI 56
           K Y  F      +   + +      +  ++   + +    +    +            K+
Sbjct: 406 KLYEHF------EFVRKQVGTKKLMNVMMQLRLVCDSPHLFFYPWNDYADSGLVEQSAKL 459

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQE 103
           + L+ ++   +     +++   F S L  ++                          I  
Sbjct: 460 QLLDQLLPALHKDGHRVLIFTQFTSMLDLIEEFVNNTLGYKSCRIDGSTDQADRKDEIDR 519

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           ++  ++ +      + G GLNL    + ++ F   W+ +     ++   + R  + G  +
Sbjct: 520 FSTEEVDVFLLSTRAGGLGLNLTA-ADSVILFDSDWNPQ-----VDLQAMDRVHRIGQTK 573

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY L+  NT++E++L +  +K  ++ L++ 
Sbjct: 574 PVSVYRLVIANTVEEIMLAKADSKRRLERLVIQ 606


>gi|281351280|gb|EFB26864.1| hypothetical protein PANDA_007143 [Ailuropoda melanoleuca]
          Length = 967

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 326 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 385

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 386 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 445

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 446 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSNKFIFMLSTRAGGLGINL-ASADVVIL 504

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 505 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 559

Query: 195 LNALK 199
           +   +
Sbjct: 560 IQQGR 564


>gi|281361889|ref|NP_732097.2| helicase 89B [Drosophila melanogaster]
 gi|272477008|gb|AAF55260.3| helicase 89B [Drosophila melanogaster]
          Length = 1923

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1608 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1667

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1668 ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1727

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1728 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1786

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1787 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1841

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1842 LTANTVVSAENA 1853


>gi|156040810|ref|XP_001587391.1| hypothetical protein SS1G_11383 [Sclerotinia sclerotiorum 1980]
 gi|154695767|gb|EDN95505.1| hypothetical protein SS1G_11383 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1301

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 63/177 (35%), Gaps = 21/177 (11%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQ 85
            G   Y            K+     ++   +      I+   F + L              
Sbjct: 1115 GHKKYMRYLRKNWQSSAKVDKCVELLERFQTEGEKTIIFSQFVTFLDLLQVPIGEKGWKC 1174

Query: 86   KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            + +       +    I+++ N+    ++     +   GLNL    + ++    +W+    
Sbjct: 1175 ERYDGSINAKRRDDAIKQFTNKPDCNIMLISLKAGNAGLNLVA-ASRVIILDPFWNP--- 1230

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALK 199
               IE   V R  + G  + V V+ ++ Q+T+++ ++   + K  + +  L+  A+K
Sbjct: 1231 --FIEMQAVDRAHRIGQMKPVQVHRILIQDTVEDRIMALQKQKKELVESALDEGAMK 1285



 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 3/47 (6%), Positives = 9/47 (19%), Gaps = 6/47 (12%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVYYDE 44
           Y   + +             +     N     ++  Q         +
Sbjct: 835 YESLRDKTQLQFNKYRKAGTVGKNYSNILVLLLRLRQCCCHPHLIID 881


>gi|224108163|ref|XP_002314744.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222863784|gb|EEF00915.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 752

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K +AL  ++   K     +++   + S L  L+          +              
Sbjct: 578 SAKCRALAELLPDLKKCGHRVLIFSQWTSMLDILEWTLDVLGVTYRRLDGSTQVTERQAI 637

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N    I        + G GLNL  G + ++   L ++ +     I+R    R  + 
Sbjct: 638 VDAFNNDTSISACLLSTRAGGQGLNLT-GADTVIIHDLDFNPQ-----IDRQAEDRCHRI 691

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +Y L+ + T+DE V +  + K  +   +L +
Sbjct: 692 GQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLES 729


>gi|212527854|ref|XP_002144084.1| TBP associated factor (Mot1), putative [Penicillium marneffei ATCC
            18224]
 gi|210073482|gb|EEA27569.1| TBP associated factor (Mot1), putative [Penicillium marneffei ATCC
            18224]
          Length = 1894

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   DLQ +          +         +L N      +E H +       
Sbjct: 1566 KLFEDFSKKEQKDLQSKMGSTEKSAKEHIFQALQYMRRLCNSPALVIKEGHKQYDDVQKY 1625

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1626 LSAKNSHIRDISHAPKLTALRDLLIDCGIGVDPNTEGELDTGASYVSPHRALVFCQMKEM 1685

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    + ++N +    +L    +  G GLNL 
Sbjct: 1686 LDIVQEDVLKKMLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1745

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1746 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRF 1799

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1800 KIDVASTVVN 1809


>gi|115910490|ref|XP_783941.2| PREDICTED: similar to PASG [Strongylocentrotus purpuratus]
 gi|115960855|ref|XP_001194026.1| PREDICTED: similar to PASG [Strongylocentrotus purpuratus]
          Length = 734

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 70/194 (36%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYD--------EEKHWKEVHDE--KIKALEVIIE--KANAAPIIVAYH 76
            ++  +  N     +        E +  +E+     K+  ++ ++   K     +++   
Sbjct: 456 VMQLRKCCNHPYLLEYPLLETTGEYRVDEELVSSCGKMLVVDKLLPALKERGHKVLIFSQ 515

Query: 77  FNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F + L  L+                     +     +  +   + L      + G G+NL
Sbjct: 516 FTTMLDILEDFCHMRSHQYCRLDGTTSLEDRQERMKEFNSNPDVFLFLLSTRAGGLGINL 575

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V +Y L+  NTID+ +++R  
Sbjct: 576 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVIIYRLVTANTIDQRIVERAA 629

Query: 186 TKSTIQDLLLNALK 199
            K  ++ ++++  K
Sbjct: 630 AKRKLEKMVIHQGK 643


>gi|312378128|gb|EFR24784.1| hypothetical protein AND_10400 [Anopheles darlingi]
          Length = 2623

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 31/208 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIE 64
            +G    A    +  ++  +  N A+     +   +V+             K+  L+ ++ 
Sbjct: 834  KGLKGSANTFLNIVIELKKCCNHAMLTRPVEFDAQVNQDDVLQQLLKGSGKLVLLDKLLC 893

Query: 65   --KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI--P 110
              K     +++       L  L +   +     +              +  +N       
Sbjct: 894  RLKETGHRVLIFSQMVRMLDILAEYLQKRHFSYQRLDGSIKGELRRQALDHFNAEGSTDF 953

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G G+NL    + ++ F   W+ +      +     R  + G K  V +Y L
Sbjct: 954  CFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARAHRIGQKNQVNIYRL 1007

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   +++E +++R + K  +  L++  +
Sbjct: 1008 VTARSVEENIVERAKKKMVLDHLVIQRM 1035


>gi|225684006|gb|EEH22290.1| DNA repair and recombination protein RAD54 [Paracoccidioides
           brasiliensis Pb03]
          Length = 821

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 523 LKAIGILKKLCNHPDLLNLGADLPGCEQFFPDDYIPIESRGRDRDVRSWYSGKMMVLDRM 582

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+ + 
Sbjct: 583 LARIRQDTNDKIVLISNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDPEG 642

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 643 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 696

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 697 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 728


>gi|7022306|dbj|BAA91550.1| unnamed protein product [Homo sapiens]
 gi|55662168|emb|CAH70224.1| helicase, lymphoid-specific [Homo sapiens]
          Length = 310

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 1   MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 60

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 61  MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 120

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 121 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 174

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 175 AKRKLEKLIIH 185


>gi|189515794|ref|XP_697956.3| PREDICTED: chromodomain-helicase-DNA-binding protein 7 [Danio rerio]
          Length = 3094

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 70/244 (28%), Gaps = 50/244 (20%)

Query: 2    KQYHKFQRELYCDLQGENI----------EAFNSASKTVKCLQLANGAVY--------YD 43
            K Y     + +  L                  N  +  ++  +  N             +
Sbjct: 1260 KYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMELRKCCNHPYLINGAEEKIME 1319

Query: 44   EEKHWKEVHD------------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP 89
            E +    +               K+  ++ ++ K       +++       L  L+    
Sbjct: 1320 EFRETHPLDQPEFHLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLI 1379

Query: 90   QGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
            Q R   +              I  ++       +      + G G+NL    +  + F  
Sbjct: 1380 QRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDS 1438

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+ +      +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L +
Sbjct: 1439 DWNPQN-----DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1493

Query: 198  LKKE 201
            +   
Sbjct: 1494 MSGR 1497


>gi|114558342|ref|XP_513751.2| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           9 [Pan troglodytes]
          Length = 684

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           + Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 RYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 407

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +    I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 408 NFGRQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 461

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 462 KSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496


>gi|66392086|ref|YP_239310.1| possible DNA helicase [Xanthomonas phage Xp15]
 gi|62529196|gb|AAX84879.1| possible DNA helicase [Xanthomonas phage Xp15]
          Length = 587

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 17/205 (8%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y K + +L  + +   I A N+A K +K LQ+A+GAV  DE +  K     +  AL  
Sbjct: 382 KMYEKMKSDLLVEYEAGEITAVNAAVKAMKLLQIASGAVKDDEGRIVKVDASTREDALWE 441

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPL 111
           I E      +++   F + +  L   F                      +Q++ +  + +
Sbjct: 442 IFEGTGETKLVIFAAFRATIDHLVGYFQDRNVKVATINGDVPHALRAKHVQDFQDSDLQV 501

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L   P S  HG+ L     I+ ++SL    E + Q   RI      +AG  R   +Y+LI
Sbjct: 502 LIIQPQSSAHGITLTASCTIV-WYSLVPSGEIYVQANGRIT-----RAGQSRKQTIYHLI 555

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
                +  VL  L  K +    LL 
Sbjct: 556 GCRP-ERHVLDILEGKVSTSQNLLE 579


>gi|20521890|dbj|BAA92573.2| KIAA1335 protein [Homo sapiens]
          Length = 2041

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 35  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 94

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 95  DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 154

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 155 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 211

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 212 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 265


>gi|195550742|ref|XP_002076092.1| GD12001 [Drosophila simulans]
 gi|194201741|gb|EDX15317.1| GD12001 [Drosophila simulans]
          Length = 783

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 433 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 490

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 491 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 550

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 551 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 605

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 606 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 649


>gi|47228067|emb|CAF97696.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2331

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 43/234 (18%)

Query: 2    KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y       +  L      N    N  +  ++  +  N     +  +            
Sbjct: 1152 KYYRAILERNFSFLSLGANSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVAELREVYD 1211

Query: 52   -------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                            K+  L+ ++   KA    +++       L  L+      R L +
Sbjct: 1212 PSAPDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYE 1271

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL    +  V F   W+ +  
Sbjct: 1272 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCVIFDSDWNPQN- 1329

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                +     R  + G  +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1330 ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1379


>gi|221488620|gb|EEE26834.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
          Length = 872

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 48/237 (20%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----- 62
           ++    + +G+        S     ++L N       +    +  ++  K    +     
Sbjct: 440 RKMFTAEAEGKGGFTGRVLSSIQGLMKLCNHPSLVKSQAQMLQGFEKCEKYFSELDLEGQ 499

Query: 63  ------------------------IEKANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK- 96
                                   I       I++  ++   L    +     G  + + 
Sbjct: 500 KARSRMVRTEISGKLLLLARLLDVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRL 559

Query: 97  --------DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                       I ++N+   P   +      + G G+NL  G N LV F   W+     
Sbjct: 560 DGQTSIKKRHAMITKFNDPMNPHSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPAN-- 616

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              ++  + R  + G K++ ++Y   +  TI+E + QR   K  +  +L++  + + 
Sbjct: 617 ---DKQALARVWRDGQKKSCYIYRFFSTGTIEEKIYQRQICKDGLSAMLVSDGENQI 670


>gi|114666515|ref|XP_512012.2| PREDICTED: chromodomain helicase DNA binding protein 3 [Pan
            troglodytes]
          Length = 1846

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 989  KYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGG 1048

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVA----------YHFNSDLARLQKAFPQGRTLD 95
                   K+  L+ ++ K       +++           Y+F        +    G T  
Sbjct: 1049 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQVTCALSCLYNFLDYEGYKYERIDGGITGA 1108

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1109 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1162

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1163 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1204


>gi|45198479|ref|NP_985508.1| AFL040Wp [Ashbya gossypii ATCC 10895]
 gi|44984430|gb|AAS53332.1| AFL040Wp [Ashbya gossypii ATCC 10895]
          Length = 1086

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y +   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 387 KWYKQILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 446

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                 K+    +   K + + +++    +  L  L+                   +   
Sbjct: 447 YNSAKLKVLDKLLKKLKEDGSRVLIFSQMSRLLDILEDYCYFRGYEYCRIDGSTAHEDRI 506

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 507 EAIDEYNAPDSRKFIFLLTTRAGGLGINLTT-ADVVVLYDSDWNPQA-----DLQAMDRA 560

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+ L+  N+++E +L+R   K  +  L++   +
Sbjct: 561 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQGR 603


>gi|15838886|ref|NP_299574.1| hypothetical protein XF2295 [Xylella fastidiosa 9a5c]
 gi|9107459|gb|AAF85094.1|AE004041_6 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 470

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 2/140 (1%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   ++E++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQEMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LD+ P T+++WN G IP+LFAHPAS 
Sbjct: 317 HEIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRVLDQHPDTLRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWW 139
           GHGLNLQ GGNIL FF  WW
Sbjct: 377 GHGLNLQDGGNILAFFGHWW 396


>gi|323349632|gb|EGA83848.1| Isw1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1101

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 411 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 470

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 471 YNAAKLQVLDKLLKKLKEXGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 530

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 531 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 584

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 585 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 633


>gi|194207506|ref|XP_001915622.1| PREDICTED: similar to RAD54-like protein [Equus caballus]
          Length = 755

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y KF R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKKFLRQAKPAEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFEGALDI 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+          +++  ++   L   +K         
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRGNDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|24666729|ref|NP_649111.1| Chd3 [Drosophila melanogaster]
 gi|25089877|sp|O16102|CHD3_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 3; AltName:
           Full=ATP-dependent helicase Chd3
 gi|23093148|gb|AAF49162.2| Chd3 [Drosophila melanogaster]
          Length = 892

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 70/222 (31%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           K Y     + +  L  +      +  +  +   +  N    +        +         
Sbjct: 520 KFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMS 579

Query: 53  -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L  ++++  A+   +++       L  L+                    
Sbjct: 580 SLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGD 639

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N+      +      + G G+NL    + ++ F   W+        +    
Sbjct: 640 LRQKAIDRFNDPVSEHFVFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDVQAF 693

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G K+ V +Y  +  N+++E ++Q  + K  +  L++
Sbjct: 694 SRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVV 735


>gi|322494672|emb|CBZ29974.1| putative DNA-dependent ATPase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1098

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 39/225 (17%)

Query: 8   QRELYCDLQGENIEAFNSA--------SKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           QRE Y ++  ++ E  N A        +  +   ++ N     D  +             
Sbjct: 409 QREWYMNVLAKDAEVLNKAGGSVASLTNAMMSLRKVINHPYLMDGGEEGPPFVTDEKLVR 468

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              K+  L+ ++ +          +++   F S L  L+                 +   
Sbjct: 469 TSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYD 528

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       +      + G G+NLQ   N ++ +   W+ +     ++     
Sbjct: 529 RDSQMASFNSPSSDYFIFLLSTRAGGLGINLQA-ANHVILYDSDWNPQ-----MDLQAQD 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G KR+V VY  +   T++E + +R   K  +  +++   +
Sbjct: 583 RAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGR 627


>gi|156379809|ref|XP_001631648.1| predicted protein [Nematostella vectensis]
 gi|156218692|gb|EDO39585.1| predicted protein [Nematostella vectensis]
          Length = 824

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 66/221 (29%), Gaps = 33/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKHW 48
           K Y       +  L  +  +  +  +  ++  +  N    +               E + 
Sbjct: 516 KYYKWILTRNFEALNTKGAQQVSLLNVMMELKKCCNHPYLFHAAALEAKRTQSGGYEPNS 575

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L  +++K       +++       L  L+          +          
Sbjct: 576 LTEASGKLMLLVKMLKKLREQGHRVLIFSQMTRMLDLLEDFLEGHGYKYERIDGSVNGAA 635

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + +  +   W+        +    +
Sbjct: 636 RQEAIDRFNAPTSQAFCFLLSTRAGGLGINL-ATADTVFIYDSDWNP-----HNDIQAFS 689

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G    V +Y  + +++++E + Q  + K  +  L++
Sbjct: 690 RAHRIGQNNKVMIYRFVTRSSVEERITQVAKKKMMLTHLVV 730


>gi|242784804|ref|XP_002480466.1| TBP associated factor (Mot1), putative [Talaromyces stipitatus ATCC
            10500]
 gi|218720613|gb|EED20032.1| TBP associated factor (Mot1), putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1894

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   DLQ +          +         +L N      +E H +       
Sbjct: 1563 KLFEDFSKKEQKDLQSKMGSTEKSAKEHIFQALQYMRRLCNSPALVIKEGHKQYDDVQRW 1622

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1623 LHAKNSHIRDIAHAPKLTALRDLLVDCGIGVDPNTEGELDTGASYVSPHRALVFCQMKEM 1682

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    + ++N +    +L    +  G GLNL 
Sbjct: 1683 LDIVQEDVLKKMLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1742

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1743 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRF 1796

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1797 KIDVASTVVN 1806


>gi|297696366|ref|XP_002825369.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA helicase INO80 complex
            homolog 1-like [Pongo abelii]
          Length = 1537

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 71   IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
              +  +         +     +  ++        N   I +      + G G+NL    +
Sbjct: 1112 CCMPEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTA-AD 1170

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR + KS I
Sbjct: 1171 TVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEI 1225

Query: 191  QDLLLNA 197
            Q ++++ 
Sbjct: 1226 QRMVISG 1232


>gi|156039515|ref|XP_001586865.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980]
 gi|154697631|gb|EDN97369.1| hypothetical protein SS1G_11894 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 861

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W     + +  +
Sbjct: 567 LKAIGMLKKLCNHPDLLNLSDDLPGCEKYWPEDYVPKDGRGRDRDIKPWYSGKMQVLDRM 626

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L    K                 + K    + ++N+   
Sbjct: 627 LARIRQDTNDKIVLISNYTQTLDMFDKLCRNRGYGSLRLDGTMNVTKRQKLVDKFNDPDG 686

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 687 QEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 740

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 741 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 772


>gi|224077261|ref|XP_002195547.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Taeniopygia
           guttata]
          Length = 2673

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y     + +  L          N  +  ++  +  N     +  +        K    
Sbjct: 679 KYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHCP 738

Query: 60  E--------------------VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           E                     ++ K  A    +++       L  L+    Q R   + 
Sbjct: 739 EAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 798

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 799 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 855

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 856 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 909


>gi|157130680|ref|XP_001661961.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
 gi|108881922|gb|EAT46147.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
          Length = 791

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 46/235 (19%)

Query: 2   KQYHKFQRE---LYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEE------------ 45
           + Y  F +        L+   ++A   + S      +L N      E+            
Sbjct: 408 ELYKSFLQSDSIRRSMLEKAQVKASLTALSNITSLKKLCNHPDLVYEKIQERADGFENAH 467

Query: 46  ---------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                    K  +     K+  L+ ++   +      I++  ++   L   +K   +   
Sbjct: 468 KILPSNYSSKELRPEFGGKLMVLDCMLASIKMNTDDKIVLVSNYTQTLDLFEKLCRKRGY 527

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    T+ K    + E+N+      +      + G GLNL  G N LV F   W+ 
Sbjct: 528 CYVRLDGSMTIKKRGKVVDEFNKPDSKEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNP 586

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  +   + R  + G K+  F+Y L+A  TI+E + QR   K  + + +++
Sbjct: 587 AN-----DEQAMARVWRDGQKKPCFIYRLLATGTIEEKIFQRQTHKKALSNTVVD 636


>gi|323454081|gb|EGB09951.1| hypothetical protein AURANDRAFT_36628 [Aureococcus anophagefferens]
          Length = 712

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 28/196 (14%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIKALEVIIE--KANAAP 70
              +  +  ++  +       + + +   +            K++ L+ ++     N   
Sbjct: 494 TYKSLLNLLMQLRKTCCHPFLFPDAEGDPDETTLEELVAASGKLRVLDRLLLKLHRNGHR 553

Query: 71  IIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
           ++V   F+S                          +    ++ +NE   P  +      +
Sbjct: 554 VVVFSQFSSMVDILDDYCRLRGWSFCRLTGATNRVRRVVNVRAFNEPSSPLFIFLMTTRA 613

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NLQ   +  V +   W+ +      +   + R  + G  + V +Y L A  T +E
Sbjct: 614 GGLGINLQS-ADTCVLYDSDWNPQA-----DLQAMARVHRLGQTKTVHIYRLCAAGTAEE 667

Query: 179 LVLQRLRTKSTIQDLL 194
            VLQR + K  +  ++
Sbjct: 668 RVLQRSQKKLYLSHVV 683


>gi|261203723|ref|XP_002629075.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
 gi|239586860|gb|EEQ69503.1| dsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis SLH14081]
          Length = 828

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 530 LKAIGLLKKLCNHPDLLNLGTDLPGSEQFFPDDYVPMECRGRDRDVRSWYSGKMMVLDRM 589

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+   
Sbjct: 590 LARIRQDTNDKIVLISNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDPNG 649

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 650 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 703

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 704 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 735


>gi|321261786|ref|XP_003195612.1| chromodomain helicase [Cryptococcus gattii WM276]
 gi|317462086|gb|ADV23825.1| Chromodomain helicase, putative [Cryptococcus gattii WM276]
          Length = 1502

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 85/226 (37%), Gaps = 30/226 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHD 53
           Y     + +  L     +  +  +  ++  + +N    ++  +   +          ++ 
Sbjct: 684 YKNILTKNFAVLSKGGTQQVSLMNVAMELKKASNHPYLFEGAEDRNKPANEILRGLVMNS 743

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  L++++   K++   +++       L  +         + +             +I
Sbjct: 744 GKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVRKKSI 803

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +N    P         + G G+NL    + ++ F   ++ +      +   + R  + 
Sbjct: 804 EHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQN-----DLQAMARAHRI 857

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 858 GQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 903


>gi|237837635|ref|XP_002368115.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965779|gb|EEB00975.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221509119|gb|EEE34688.1| transcriptional regulator atrx, putative [Toxoplasma gondii VEG]
          Length = 873

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 48/237 (20%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----- 62
           ++    + +G+        S     ++L N       +    +  ++  K    +     
Sbjct: 440 RKMFTAEAEGKGGFTGRVLSSIQGLMKLCNHPSLVKSQAQMLQGFEKCEKYFSELDLEGQ 499

Query: 63  ------------------------IEKANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK- 96
                                   I       I++  ++   L    +     G  + + 
Sbjct: 500 KARSRMVRTEISGKLLLLARLLDVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRL 559

Query: 97  --------DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                       I ++N+   P   +      + G G+NL  G N LV F   W+     
Sbjct: 560 DGQTSIKKRHAMITKFNDPMNPHSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPAN-- 616

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              ++  + R  + G K++ ++Y   +  TI+E + QR   K  +  +L++  + + 
Sbjct: 617 ---DKQALARVWRDGQKKSCYIYRFFSTGTIEEKIYQRQICKDGLSAMLVSDGENQI 670


>gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba dispar
            SAW760]
          Length = 1623

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 34/223 (15%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            K Y     +    L    +     +  +  ++  ++ N        +  +          
Sbjct: 898  KYYRALYDKNREFLNKGCVGSNVPHLQNLMIQLRKVCNHPFLIPGVEEKEIANPEDPESY 957

Query: 51   -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                     K+  L+ ++ K N     +++       L  L+K     +   +       
Sbjct: 958  AQELIKSSGKMVLLDKLLPKLNTDGHKVLIFSQLKGVLDILEKYLSYKKYTYERLDGSVR 1017

Query: 98   ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   I  + +G+  +      + G G+NL    + ++ +   W+ +      +    
Sbjct: 1018 SNDRQNAIDRFMKGERFVFLLCTRAGGIGINL-SEADTVIIYDSDWNPQN-----DLQAQ 1071

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+ V VY L+++NT +  + +R   K  +   +L+
Sbjct: 1072 ARCHRIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAILS 1114


>gi|17862908|gb|AAL39931.1| SD02886p [Drosophila melanogaster]
          Length = 1638

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 +K        K+  L+ ++   KAN   +++       +  L++     +     
Sbjct: 1142 SIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1201

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1202 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1256

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1257 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1306


>gi|194210929|ref|XP_001917731.1| PREDICTED: transcription termination factor, RNA polymerase II [Equus
            caballus]
          Length = 1167

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 69/246 (28%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----------- 61
             DLQG      +  S+ ++  Q               E+  E +                
Sbjct: 911  ADLQGS--STVHILSQLLRLRQCCCHLSLLKSALDPTELKSEALVLSLEEQLSALTLSEL 968

Query: 62   ---------------------------------------IIEKANAAPIIVAYHFNSDLA 82
                                                   I   + +   ++   + S L 
Sbjct: 969  DNLEPSSTVALNGKCFQVELFEDVRESTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLK 1028

Query: 83   ----------RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
                                   +    ++ +N  +   ++     + G GLNL  GGN 
Sbjct: 1029 VVALHLKRRGLTYATIDGSVNPKQRMDLVEAFNSSRGPQVMLISLLAGGVGLNLT-GGNH 1087

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            L    + W+     Q  +RI      + G ++ V ++  + + T++E +LQ    K  + 
Sbjct: 1088 LFLLDMHWNPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLA 1142

Query: 192  DLLLNA 197
              +L+ 
Sbjct: 1143 KQVLSG 1148


>gi|194208593|ref|XP_001915417.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 9
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin-remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-interacting complex 3 [Equus caballus]
          Length = 2818

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1110 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1169

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1170 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1229

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1230 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1286

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1287 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSNV 1343


>gi|324499672|gb|ADY39866.1| Helicase ssl-1 [Ascaris suum]
          Length = 2173

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y K   +   D+     E+ +      + +Q+         E    E    K++ L  +
Sbjct: 1349 AYQKQLAQERADICRRIFESDDPLVAKCRMMQM-----LQFPELRLIEYDCGKLQVLSSL 1403

Query: 63   IEKA--NAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKI 109
            +          ++    +  L          G    +             ++ +N + KI
Sbjct: 1404 LRDLFLYKHRCLIFTQMSRMLDVLQAFLSFHGYQYFRLDGTTGIEQRQAMMERFNSDPKI 1463

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S G G+NL  G + ++F+   W+       ++     R  + G  R V +Y 
Sbjct: 1464 FCFILSTRSGGIGVNLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRNVTIYR 1517

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI++ TI+E +L++   K  + +L ++ 
Sbjct: 1518 LISERTIEENILKKAMQKRRLGELAIDE 1545


>gi|320580373|gb|EFW94596.1| chromatin remodelling complex ATPase chain ISW1 [Pichia angusta
           DL-1]
          Length = 1018

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 31/225 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y     +    + G   +        +  ++  +  N    +               
Sbjct: 361 IKWYRNLLEKDIDAVNGAIGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 420

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKD 97
             +  K+  L+ +++  ++  + +++    +  L  L+                   ++ 
Sbjct: 421 VYNSGKMIVLDKLLKKLQSEGSRVLIFSQMSRLLDILEDYCYLRGYQYCRIDGSTAHEER 480

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +I ++N+      +      + G G+NL    + +V +   W+ +      +   + R
Sbjct: 481 IQSIDDFNKPGSDKFIFLLTTRAGGLGINLTT-ADAVVLYDSDWNPQA-----DLQAMDR 534

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 535 AHRIGQKKQVKVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 579


>gi|146097991|ref|XP_001468285.1| DNA-dependent ATPase; transcription activator [Leishmania infantum]
 gi|134072652|emb|CAM71368.1| putative DNA-dependent ATPase [Leishmania infantum JPCM5]
          Length = 1103

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 39/225 (17%)

Query: 8   QRELYCDLQGENIEAFNSA--------SKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           QRE Y ++  ++ E  N A        +  +   ++ N     D  +             
Sbjct: 409 QREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKLVR 468

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              K+  L+ ++ +          +++   F S L  L+                 +   
Sbjct: 469 TSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYD 528

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       +      + G G+NLQ   N ++ +   W+ +     ++     
Sbjct: 529 RDSQMASFNSPSSDYFIFLLSTRAGGLGINLQA-ANHVILYDSDWNPQ-----MDLQAQD 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G KR+V VY  +   T++E + +R   K  +  +++   +
Sbjct: 583 RAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGR 627


>gi|121806946|sp|Q2UTQ9|INO80_ASPOR RecName: Full=Putative DNA helicase ino80
 gi|83764912|dbj|BAE55056.1| unnamed protein product [Aspergillus oryzae]
          Length = 1444

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1214 DSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1273

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1274 TVADFQQRPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1327

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1328 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1366


>gi|322502240|emb|CBZ37323.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1103

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 39/225 (17%)

Query: 8   QRELYCDLQGENIEAFNSA--------SKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           QRE Y ++  ++ E  N A        +  +   ++ N     D  +             
Sbjct: 409 QREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKLVR 468

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              K+  L+ ++ +          +++   F S L  L+                 +   
Sbjct: 469 TSGKMIILDKLLHRLRADVQGKHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYD 528

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       +      + G G+NLQ   N ++ +   W+ +     ++     
Sbjct: 529 RDSQMASFNSPSSDYFIFLLSTRAGGLGINLQA-ANHVILYDSDWNPQ-----MDLQAQD 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G KR+V VY  +   T++E + +R   K  +  +++   +
Sbjct: 583 RAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGR 627


>gi|157875048|ref|XP_001685931.1| DNA-dependent ATPase; transcription activator [Leishmania major
           strain Friedlin]
 gi|68129004|emb|CAJ06440.1| putative DNA-dependent ATPase [Leishmania major strain Friedlin]
          Length = 1103

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 39/225 (17%)

Query: 8   QRELYCDLQGENIEAFNSA--------SKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           QRE Y ++  ++ E  N A        +  +   ++ N     D  +             
Sbjct: 409 QREWYMNVLAKDAEVLNKAGGSVASLTNVMMSLRKVINHPYLMDGGEEGPPFVTDEKLVR 468

Query: 52  HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              K+  L+ ++ +          +++   F S L  L+                 +   
Sbjct: 469 TSGKMVILDKLLHRLRADVQGRHKVLIFSQFTSMLNILEDYCNMRGFMYCRIDGNTSGYD 528

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N       +      + G G+NLQ   N ++ +   W+ +     ++     
Sbjct: 529 RDSQMASFNSPSSDYFIFLLSTRAGGLGINLQA-ANHVILYDSDWNPQ-----MDLQAQD 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G KR+V VY  +   T++E + +R   K  +  +++   +
Sbjct: 583 RAHRIGQKRSVRVYRFVTDGTLEEKMYRRALKKLYLDAVVVQQGR 627


>gi|24648168|ref|NP_732413.1| Ino80 [Drosophila melanogaster]
 gi|75026769|sp|Q9VDY1|INO80_DROME RecName: Full=Putative DNA helicase Ino80; Short=dINO80
 gi|23171713|gb|AAF55658.2| Ino80 [Drosophila melanogaster]
          Length = 1638

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 +K        K+  L+ ++   KAN   +++       +  L++     +     
Sbjct: 1142 SIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1201

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1202 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1256

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1257 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1306


>gi|115657922|ref|XP_785657.2| PREDICTED: similar to Rad54b [Strongylocentrotus purpuratus]
 gi|115931907|ref|XP_001183532.1| PREDICTED: similar to Rad54b [Strongylocentrotus purpuratus]
          Length = 770

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 25/178 (14%)

Query: 39  AVYYDEEKHWKEV--HDEKIKALEVIIEKAN-----AAPIIVAYHFNSDLAR-------- 83
            +Y  +    + +  H  K+  L  ++   +        +++  ++   L          
Sbjct: 480 PIYPPDYSEGRPLLAHCGKLCVLSEMLRAMHADPTRRERLVLVSNYTQTLDILQALCSIE 539

Query: 84  --LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         K    ++ +N       +      + G GLNL  G + L+ + + W
Sbjct: 540 GYQFCRLDGSTPTAKRQSIVEHFNSSYAKETIFLLSSKAGGVGLNL-IGASRLLLYDIDW 598

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G K+ V +Y LI   TI+E + QR  +K ++   +++A
Sbjct: 599 NPAN-----DLQAMARVWRDGQKKTVHIYRLITAGTIEEKIYQRQISKQSLSGAVVDA 651


>gi|110777198|ref|XP_624414.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
            [Apis mellifera]
          Length = 1966

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 976  KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYETS 1035

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                   K+  L  +++K   +   +++       L              +      T  
Sbjct: 1036 ALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGA 1095

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1096 QRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1149

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1150 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1191


>gi|268564215|ref|XP_002639045.1| C. briggsae CBR-TAG-192 protein [Caenorhabditis briggsae]
          Length = 2869

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y       +  L      A +  +  ++  +  N     +  +               
Sbjct: 1375 KFYRAILERNFSHLCKGT-SAPSLMNVMMELRKCCNHPFLINGAEETIMNDFRLAHPDWD 1433

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  +E ++ K   +   +++       L  L++         +  
Sbjct: 1434 DETLAQKALVQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERI 1493

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ F   W+ +    
Sbjct: 1494 DGNVRGDMRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1549

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
              +     R  + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E  
Sbjct: 1550 --DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGT 1607

Query: 204  HV 205
             +
Sbjct: 1608 AL 1609


>gi|3413850|dbj|BAA32289.1| KIAA0444 protein [Homo sapiens]
          Length = 978

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 60/202 (29%), Gaps = 33/202 (16%)

Query: 21  EAFNSASKTVKCLQLANGAVYYD-------------EEKHWKEVHDEKIKALEVIIEK-- 65
              +  +  +   +  N    +               +         K+  L+ +++K  
Sbjct: 2   NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 61

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLF 113
                +++       L  L+          +              I  +N          
Sbjct: 62  DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 121

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ +   W+        +    +R  + G  + V +Y  + +
Sbjct: 122 LSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRAHRIGQNKKVMIYRFVTR 175

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            +++E + Q  + K  +  L++
Sbjct: 176 ASVEERITQVAKRKMMLTHLVV 197


>gi|320582108|gb|EFW96326.1| chromatin remodelling complex ATPase chain ISW1 [Pichia angusta
           DL-1]
          Length = 1033

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q++ Y  L   +I+A N             +  ++  +  N    +            
Sbjct: 383 EMQKKWYQKLLERDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 442

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTL 94
                + +K+K L+ ++   K   + +++    +  L  L+                   
Sbjct: 443 EHLIYNSQKMKVLDKMLKRFKEQGSRVLIFSQMSRMLDILEDYCSFRGFEYCRIDGQTDH 502

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I E++       +      + G G+NL    +I+  +   W+ +      +   
Sbjct: 503 VDRIRAIDEYSAPDSKKFVFLLTTRAGGLGINLTS-ADIVFLYDSDWNPQA-----DLQA 556

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G  + V V+  + Q  I+E VL+R   K  +  L++   ++
Sbjct: 557 MDRAHRIGQTKQVKVFRFVTQKAIEEKVLERASQKLRLDQLVIQQGRQ 604


>gi|321262603|ref|XP_003196020.1| ATPase; Ino80p [Cryptococcus gattii WM276]
 gi|317462495|gb|ADV24233.1| ATPase, putative; Ino80p [Cryptococcus gattii WM276]
          Length = 1813

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
             +        V   K+  L+ ++ +       +++ +     +  +++            
Sbjct: 1488 LHIPPTKRLIVDSAKLARLDSLLRELKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRL 1547

Query: 91   ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   ++            I +      + G G+NL    + ++F+   W+       
Sbjct: 1548 DGSSPIAERRDMVTGWQTNPDIFVFCLSTRAGGLGINLTA-ADTVIFYDHDWNPSS---- 1602

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   + R  + G  + V VY L+A+ TI+E +LQ  R K  +QD+++ 
Sbjct: 1603 -DAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGKKDVQDVVVG 1650


>gi|309355522|emb|CAP38925.2| CBR-TAG-192 protein [Caenorhabditis briggsae AF16]
          Length = 2927

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y       +  L      A +  +  ++  +  N     +  +               
Sbjct: 1391 KFYRAILERNFSHLCKGT-SAPSLMNVMMELRKCCNHPFLINGAEETIMNDFRLAHPDWD 1449

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  +E ++ K   +   +++       L  L++         +  
Sbjct: 1450 DETLAQKALVQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERI 1509

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ F   W+ +    
Sbjct: 1510 DGNVRGDMRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1565

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
              +     R  + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E  
Sbjct: 1566 --DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGT 1623

Query: 204  HV 205
             +
Sbjct: 1624 AL 1625


>gi|330864739|ref|NP_001178471.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 1 [Bos taurus]
          Length = 1051

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 416 IKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 475

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 476 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 535

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNIPNSSKFIFMLSTRAGGLGINL-ASADVVIL 594

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 595 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 649

Query: 195 LNALK 199
           +   +
Sbjct: 650 IQQGR 654


>gi|178056748|ref|NP_001116655.1| DNA repair and recombination protein RAD54-like [Sus scrofa]
 gi|168084900|dbj|BAG09488.1| DNA repair protein RAD54 [Sus scrofa]
          Length = 747

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPAEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFAGALDF 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|146297575|ref|YP_001181346.1| helicase domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411151|gb|ABP68155.1| helicase domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 177

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTL 94
              E    K++  E I+E    +   ++V   +   L                       
Sbjct: 2   QNYEGSSGKLELFEEILEDVLESNHRVVVFSQWVEMLKILEERIKERGFEYFYLNGSTKS 61

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++    +  +N G+  +      + G GLNL  G ++++ + LWW+       +E   + 
Sbjct: 62  EERIDMVNRFNGGEKQVFLVSLKAGGFGLNLT-GADVVILYDLWWNPA-----VENQAMD 115

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G + +V V+ LI +NTI+E + +  + K  + D ++++
Sbjct: 116 RAHRIGQENSVQVFRLITKNTIEERIFELQQKKKDLFDQVVSS 158


>gi|281352812|gb|EFB28396.1| hypothetical protein PANDA_006982 [Ailuropoda melanoleuca]
          Length = 2707

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 699 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 758

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 759 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 818

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 819 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 875

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 876 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 929


>gi|238503544|ref|XP_002383005.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
 gi|220690476|gb|EED46825.1| RSC complex subunit (Sth1), putative [Aspergillus flavus NRRL3357]
          Length = 1095

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 33/225 (14%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           K Y +     +    D +G        ++  ++  +L N    ++  +            
Sbjct: 532 KLYKQLVTHNKMAVSDGKGGKTGMRGLSNMLMQLRKLCNHPFVFEPVEDQMNPGRGTNDL 591

Query: 53  ----DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
                 K + L+ I+ K       +++ +     +  ++                   D 
Sbjct: 592 LWRTSGKFELLDRILPKFRATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDD 651

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N    +         + G GLNLQ   + ++ F   W+  +     +     
Sbjct: 652 RSDLLKLFNAENSEYFCFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQD 705

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K  V +  LI+ N+++E +L+R + K  +   ++ A K
Sbjct: 706 RAHRIGQKNEVRILRLISSNSVEEKILERAQFKLDMDGKVIQAGK 750


>gi|322701898|gb|EFY93646.1| recombinational repair protein [Metarhizium acridum CQMa 102]
          Length = 819

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVYYD-----------------------EEKHWKEVHDEKIKALEVI 62
                   +L N     +                        ++  +  +  K+  L+ +
Sbjct: 467 LKAINILKKLCNHPDLLNLSDDLPGSECCFPPEYTPKEARGRDRDVRPEYSGKMMVLDRM 526

Query: 63  I---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
           +    +     I++  ++ S L   ++                 ++K    +  +N+   
Sbjct: 527 LARIRQDTNDKIVLISNYTSTLDLFERLCRSRQYGCLRLDGTMNVNKRQKLVDRFNDPNG 586

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 587 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 640

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 641 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 672


>gi|301766196|ref|XP_002918518.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like,
           partial [Ailuropoda melanoleuca]
          Length = 2710

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 702 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 761

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 762 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 821

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 822 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 878

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 879 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 932


>gi|195430100|ref|XP_002063095.1| GK21565 [Drosophila willistoni]
 gi|194159180|gb|EDW74081.1| GK21565 [Drosophila willistoni]
          Length = 1026

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QR+ Y  +  ++I+  N A K          ++  +  N    +              
Sbjct: 366 KMQRDWYTKVLLKDIDIVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTH 425

Query: 49  KEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
              +  K+  L+ ++ K       +++       L  L+                   + 
Sbjct: 426 LVYNSGKMAILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHED 485

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               IQE+N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 486 RNRQIQEYNMENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 539

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI ++T++E +++R   K  +  +++   +
Sbjct: 540 RAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGR 584


>gi|303316872|ref|XP_003068438.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240108119|gb|EER26293.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1905

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+EL   L     EA  +         +L N      +E H +              
Sbjct: 1583 KKEQKELAKKLGSTEKEAKEHIFQALQYMRRLCNSPALVVKEGHRQYQEVQRYLANKNSN 1642

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    ++       L      
Sbjct: 1643 IRDISHAPKLTALRDLLIDCGIGVDPSAEGELNTAASYVSPHRALIFCQMKEMLDIVQND 1702

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1703 VLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1761

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1762 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1816

Query: 194  LLN 196
            ++N
Sbjct: 1817 VVN 1819


>gi|303311053|ref|XP_003065538.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105200|gb|EER23393.1| DNA repair protein rhp54, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 799

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 501 LKAIGILKKLCNHPDLLNLSADLPGSEQLFPDDYVPPEGRGRDRDVKSWYSGKMMVLDRM 560

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T+ K    +  +N+   
Sbjct: 561 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMTVKKRQKLVDRFNDPDG 620

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 621 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 674

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K  +   ++++ +
Sbjct: 675 YRFIATGSIEEKIFQRQSHKQLLSSCVVDSAE 706


>gi|221114007|ref|XP_002155441.1| PREDICTED: similar to DNA excision repair protein ERCC-6 [Hydra
           magnipapillata]
          Length = 1079

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 40/223 (17%)

Query: 3   QYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            Y +F   R++   L G+           +K  ++ N           ++          
Sbjct: 534 IYKEFISSRDVASILNGD----MKIFPGLIKLRKICNHPDLVSLAAEVEKGKPASLDDAS 589

Query: 51  -----VHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRT 93
                    K+  +E ++   K     +++       L                     +
Sbjct: 590 CYGFWKRSGKMIVVENLLRMWKHQGHRVLLFTQSKQMLDILEGFLKAAEHSYMRMDGTTS 649

Query: 94  LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +      ++++     I +        G GLNL    N ++ +   W+       ++   
Sbjct: 650 VKSRHGIVKKFHESKNIFVFLLTTRVGGLGLNL-IAANRVIIYDPDWNPS-----VDSQA 703

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R  + G  + V +Y L+   TI+E +  R   K  + + +L
Sbjct: 704 RERSWRIGQLKDVTIYRLLTTGTIEEKIYHRQIFKQFLTNRVL 746


>gi|170043847|ref|XP_001849581.1| domino [Culex quinquefasciatus]
 gi|167867144|gb|EDS30527.1| domino [Culex quinquefasciatus]
          Length = 1027

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 75/198 (37%), Gaps = 35/198 (17%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
             +    I A ++     + +Q   G                K++ L+ ++++  +    
Sbjct: 607 LRILHPIISAMSTLFPDPRLIQYDCG----------------KLQTLDRLLKELKSGGHR 650

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
           +++       L  L+        +           +    ++ +N + ++ +      S 
Sbjct: 651 VLIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQLLMERFNGDKRMFVFILSTRSG 710

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+E 
Sbjct: 711 GVGINLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEEN 764

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +L++   K  + DL +  
Sbjct: 765 ILKKANQKRMLGDLAIEG 782


>gi|73946645|ref|XP_860367.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 21 [Canis familiaris]
          Length = 1553

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 37/226 (16%)

Query: 3    QYHKFQRELYCDLQGEN----IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
             Y   Q +      G      + A    +  ++  ++ N    +   +            
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKVRAKTLMNTIMQLRKICNHPYMFQHIETLICKKNFNIKT 1022

Query: 53   -------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
                     K + L+ I+ K  A    +++     S +  ++  F               
Sbjct: 1023 FRSLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1082

Query: 94   LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +  
Sbjct: 1083 SEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQ 1136

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1182


>gi|74197316|dbj|BAC37509.2| unnamed protein product [Mus musculus]
          Length = 378

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 87/232 (37%), Gaps = 39/232 (16%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEK-- 46
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D  +  
Sbjct: 55  VKIYVGLSKMQREWYTRILIKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 114

Query: 47  ------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 115 PLFTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 174

Query: 91  -GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +T  +   +I  +NE      +      + G G+NL    ++++ +   W+ +     
Sbjct: 175 DEQTPHERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ----- 228

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++   +    + G ++ V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 229 VDLQAMDYAHRIGQRKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 280


>gi|115390074|ref|XP_001212542.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194938|gb|EAU36638.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1205

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 75/211 (35%), Gaps = 34/211 (16%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---- 63
            +++   +L+ E   + N  SK     +L               V   KI+    I+    
Sbjct: 997  KKKTLAELKKE--ASKNIKSKRKYLRRL-----------EKTWVTSAKIEKTLEILDGIR 1043

Query: 64   EKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +       I+   F S L              ++     +  D++   +   ++    ++
Sbjct: 1044 QGEGNEKTIIFSQFTSLLDLLEVPISRRGWNYRRYDGSMKPQDRNASVLDFTDDPDCRIM 1103

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +   GLNL    + ++ F  +W+       IE   + R  + G  R V ++ ++ 
Sbjct: 1104 LVSLKAGNSGLNLVA-ASQVIIFDPFWNP-----YIEEQAIDRAHRIGQMREVQIHRILV 1157

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             NT+++ +L+    K  + +  L+    + +
Sbjct: 1158 PNTVEDRILELQDKKRELIEGALDEKASKNV 1188



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 6/67 (8%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 1   MKQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           M+ Y   + +        L+   +     N     ++  Q         +       + +
Sbjct: 780 MELYQALETKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDFSVKLNANTD 839

Query: 55  KIKALEV 61
           ++  +E 
Sbjct: 840 ELNLVEN 846


>gi|154273573|ref|XP_001537638.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus NAm1]
 gi|150415246|gb|EDN10599.1| chromatin remodelling complex ATPase chain ISW1 [Ajellomyces
           capsulatus NAm1]
          Length = 974

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K      +     QG+        +  ++  +  N    +               
Sbjct: 424 VKWYQKILEKDIDAVNGAQGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 483

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
             +  K+  L+ I+   K   + +++    +  L                       +  
Sbjct: 484 IDNAGKMVILDKILKRMKNQGSRVLIFSQMSRVLDILEDYCVFREHQYCRIDGSTAHEDR 543

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 544 IAAIDEYNRPGSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 597

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V V+  + +N I+E VL+R   K  +  L++   + +
Sbjct: 598 AHRIGQTKQVVVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRAQ 643


>gi|242208372|ref|XP_002470037.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730937|gb|EED84787.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1497

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 77/227 (33%), Gaps = 29/227 (12%)

Query: 2    KQYHKFQRELYC----DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----- 52
            + Y + ++        D +G++      +++ ++  ++      ++  +           
Sbjct: 868  QLYKQMKKYKMIADGKDTKGKSGGVKGLSNELMQLRKICQHPFLFESVEDRINPSGIVDD 927

Query: 53   -----DEKIKALEVIIEKA--NAAPIIVAYH----------FNSDLARLQKAFPQGRTLD 95
                   KI+ L  I+ K       +++ +           F   +         G   +
Sbjct: 928  KIVRASGKIELLSRILPKFFATDHRVLIFFQMTKVMDIMEDFLKFMGWKYLRLDGGTKTE 987

Query: 96   KDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL-EEHQQMIERIG 152
                 +Q +N     I +      + G GLNLQ    +++   +      +     +   
Sbjct: 988  DRAGHVQLFNAPDSDIRVFILSTRAGGLGLNLQTADTVIMNNLIDNSFDSDWNPHADLQA 1047

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V +   I + +++E + QR R K  I D ++ A +
Sbjct: 1048 QDRAHRIGQTKVVRILRFITEKSVEESMFQRARYKLDIDDKVIQAGR 1094


>gi|50290467|ref|XP_447665.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526975|emb|CAG60602.1| unnamed protein product [Candida glabrata]
          Length = 1039

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 372 DMQVQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 431

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 432 EHLIFNAGKMIVLDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRNYNYCRIDGSTSH 491

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + +V F   W+ +      +   
Sbjct: 492 EERIDAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVVLFDSDWNPQA-----DLQA 545

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E VL+R   K  +  L++ 
Sbjct: 546 MDRAHRIGQKKQVHVYRFVTENAIEEKVLERAAQKLRLDQLVIQ 589


>gi|256272897|gb|EEU07865.1| Isw1p [Saccharomyces cerevisiae JAY291]
          Length = 1129

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 439 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 498

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 499 YNAAKLQVLDKLLKKLKGEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 558

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 559 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 612

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 613 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 661


>gi|195109608|ref|XP_001999375.1| GI24474 [Drosophila mojavensis]
 gi|193915969|gb|EDW14836.1| GI24474 [Drosophila mojavensis]
          Length = 1663

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 +K        K+  L+ ++   KA    +++       +  L++     +     
Sbjct: 1156 SIVVPDKETLITDAGKLFVLDSLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1215

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1216 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1270

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1271 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1320


>gi|209877571|ref|XP_002140227.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209555833|gb|EEA05878.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1100

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 37/224 (16%)

Query: 7   FQRELYCDLQGENIEAFN---------SASKTVKCLQLANGAVYYD--------EEKHWK 49
            QR LY D+  +NI+A             +  ++  +  N    +D              
Sbjct: 426 MQRTLYRDILSKNIDALQERDSGGRVRLINLAMQLRKACNHPYLFDGYEDKNEDPFGEHV 485

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKD 97
             +  K+  L+ + +K   N + I++             F               + +  
Sbjct: 486 IENSGKMIMLDRLTKKLLQNGSRILIFSQMARILDILEDFCYMRKYKYCRIDGNTSTEDR 545

Query: 98  PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+    I +      + G G+NL    +I++ +   W+ +     ++   + R
Sbjct: 546 DTQISDFNKPNSDISIFLLSTRAGGLGVNL-ATADIVIIYDSDWNPQ-----VDLQAMDR 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V++Y L  +NTI+E +L+R   K  ++  ++   K
Sbjct: 600 AHRIGQKKPVYIYRLFHENTIEEKILERANLKLQLESAIIQQGK 643


>gi|119187661|ref|XP_001244437.1| hypothetical protein CIMG_03878 [Coccidioides immitis RS]
          Length = 1905

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+EL   L     EA  +         +L N      +E H +              
Sbjct: 1583 KKEQKELAKKLGSTEKEAKEHIFQALQYMRRLCNSPALVVKEGHRQYQEVQRYLANKNSN 1642

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    ++       L      
Sbjct: 1643 IRDISHAPKLTALRDLLIDCGIGVDLSVEGELNTAASYVSPHRALIFCQMKEMLDIVQND 1702

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1703 VLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1761

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1762 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1816

Query: 194  LLN 196
            ++N
Sbjct: 1817 VVN 1819


>gi|301752864|ref|XP_002912282.1| PREDICTED: chromodomain-helicase-DNA-binding protein 9-like
            [Ailuropoda melanoleuca]
          Length = 2885

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1110 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1169

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1170 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1229

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1230 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1286

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1287 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1343


>gi|1765914|emb|CAA71278.1| RAD54 [Drosophila melanogaster]
          Length = 784

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 434 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 491

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 492 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 551

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 552 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 606

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 607 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|310790413|gb|EFQ25946.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1874

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++   KA    +++ +     +  +++                    +  
Sbjct: 1594 DSGKLATLDKLLTRLKAEGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1653

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1654 TVADFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1707

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q +++  
Sbjct: 1708 LGQTRQVTVYRLITKGTIEERIRKRAMQKEEVQRVVIQG 1746


>gi|327349292|gb|EGE78149.1| DsDNA-dependent ATPase Rad54 [Ajellomyces dermatitidis ATCC 18188]
          Length = 849

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 551 LKAIGLLKKLCNHPDLLNLGTDLPGSEQFFPDDYVPMECRGRDRDVRSWYSGKMMVLDRM 610

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+   
Sbjct: 611 LARIRQDTNDKIVLISNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDPNG 670

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 671 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 724

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 725 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 756


>gi|291398172|ref|XP_002715776.1| PREDICTED: transcription termination factor, RNA polymerase II
            [Oryctolagus cuniculus]
          Length = 1163

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 67/246 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 913  STVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLVLSLEEQLSALTLSELHDPVPSPT 972

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + S L         
Sbjct: 973  VSLNGTCFKVELFEDTRESTKIASLLAELEAIRSNSKSQKSVIVSQWTSMLKVVALHLKR 1032

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N      ++     + G GLNL  GGN L    + W
Sbjct: 1033 HGLTYATIDGSVNPKQRMDLVEAFNRSSGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1091

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+   
Sbjct: 1092 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSA 1146

Query: 200  KETIHV 205
            +    +
Sbjct: 1147 ESVTKL 1152


>gi|294656285|ref|XP_458541.2| DEHA2D01672p [Debaryomyces hansenii CBS767]
 gi|199431348|emb|CAG86673.2| DEHA2D01672p [Debaryomyces hansenii]
          Length = 1041

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 31/225 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 380 IKWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDEHL 439

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKD 97
             +  K+  L+ ++   K   + +++    +  L  L+                 + +  
Sbjct: 440 VFNAGKMIILDKMLKKFKKEGSRVLIFSQMSRLLDILEDYCYLRDYSYCRIDGSTSHEDR 499

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N       +      + G G+NL    +I++ +   W+ +      +   + R
Sbjct: 500 IEAIDQYNMPDSDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQAMDR 553

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G K+ V VY  + +N I+E VL R   K  +  L++   ++
Sbjct: 554 AHRIGQKKQVKVYRFVTENAIEEKVLDRAAQKLRLDQLVIQQGRQ 598


>gi|95147342|ref|NP_079410.4| chromodomain-helicase-DNA-binding protein 9 [Homo sapiens]
          Length = 2881

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|87130801|gb|ABD24032.1| PRIC320 isoform 1 [Homo sapiens]
          Length = 2881

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|307197292|gb|EFN78584.1| Chromodomain-helicase-DNA-binding protein 7 [Harpegnathos saltator]
          Length = 4395

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 72/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      A   N  +  ++  +        +  +   ++        
Sbjct: 2016 KYYRGILERNFSFLAKGTTSANIPNLMNTMMELRKCCIHPFLLNGAEDQIQLDYKTGEKE 2075

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  A+   +++       L  L+      +   +  
Sbjct: 2076 DSEAYYHALVNSSGKMVLIDKLLPKLKASGHRVLIFSQMVKCLDLLEDYLLYKKYPYERI 2135

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2136 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2191

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V VY L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2192 --DLQAQARCHRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2242


>gi|198432555|ref|XP_002131918.1| PREDICTED: similar to chromodomain helicase DNA binding protein 3
            [Ciona intestinalis]
          Length = 1904

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEE-------------KH 47
            K Y       +  L         +  +  +   +  N    +++                
Sbjct: 936  KFYRYILARNFKGLNSRGGPNNSSLLNIMMDLKKCCNHPYLFNKPAEEAQRSHNGAFEGT 995

Query: 48   WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       +++       L  L+          +         
Sbjct: 996  ELTKTSGKLIVLQKMLRKLKDRGNRVLIFSQMTRMLDILEDFLEYEGYKYERIDGSITGS 1055

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +I  +N              + G G+NL    + +  +   W+        +    
Sbjct: 1056 IRQESIDRFNAPNSDHFAFLLSTRAGGLGINL-ATADTVFIYDSDWNP-----HNDIQAF 1109

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V +  + K  +  L++
Sbjct: 1110 SRAHRIGQTNKVMIYRFVTKNSVEERVAEVAKRKMMLTHLVV 1151


>gi|151946631|gb|EDN64853.1| ATPase component of a four subunit chromatin remodeling complex
           [Saccharomyces cerevisiae YJM789]
 gi|190408605|gb|EDV11870.1| ATPase component of a four subunit chromatin remodeling complex
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1129

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 439 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 498

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 499 YNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 558

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 559 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 612

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 613 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 661


>gi|38344264|emb|CAE02069.2| OSJNBa0005N02.1 [Oryza sativa Japonica Group]
 gi|38345412|emb|CAE03103.2| OSJNBa0017B10.18 [Oryza sativa Japonica Group]
 gi|116309716|emb|CAH66762.1| OSIGBa0158F05.11 [Oryza sativa Indica Group]
          Length = 863

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                +   K +AL  ++     +   +++   + + L  L+               G  
Sbjct: 680 TDEHVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTP 739

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + +    +  +N  + I        + G GLNL  G + ++   + ++ +     ++R  
Sbjct: 740 VTERQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQ-----MDRQA 793

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 794 EDRCHRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 838


>gi|324499612|gb|ADY39837.1| Helicase ssl-1 [Ascaris suum]
          Length = 2737

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y K   +   D+     E+ +      + +Q+         E    E    K++ L  +
Sbjct: 1349 AYQKQLAQERADICRRIFESDDPLVAKCRMMQM-----LQFPELRLIEYDCGKLQVLSSL 1403

Query: 63   IEKA--NAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKI 109
            +          ++    +  L          G    +             ++ +N + KI
Sbjct: 1404 LRDLFLYKHRCLIFTQMSRMLDVLQAFLSFHGYQYFRLDGTTGIEQRQAMMERFNSDPKI 1463

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S G G+NL  G + ++F+   W+       ++     R  + G  R V +Y 
Sbjct: 1464 FCFILSTRSGGIGVNLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRNVTIYR 1517

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI++ TI+E +L++   K  + +L ++ 
Sbjct: 1518 LISERTIEENILKKAMQKRRLGELAIDE 1545


>gi|320038286|gb|EFW20222.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 1905

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+EL   L     EA  +         +L N      +E H +              
Sbjct: 1583 KKEQKELAKKLGSTEKEAKEHIFQALQYMRRLCNSPALVVKEGHRQYQEVQRYLANKNSN 1642

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    ++       L      
Sbjct: 1643 IRDISHAPKLTALRDLLIDCGIGVDPSAEGELNTAASYVSPHRALIFCQMKEMLDIVQND 1702

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1703 VLKKLLPSIQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1761

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1762 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1816

Query: 194  LLN 196
            ++N
Sbjct: 1817 VVN 1819


>gi|253721987|gb|ACT34057.1| Mot1 [Aegilops tauschii]
          Length = 2051

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 67/261 (25%)

Query: 1    MKQYHKF----QRELYCDLQGENIE---------AFNSASKTVKCLQLANGAVYYDEEKH 47
            +K Y KF     +E    +   +             +        L+L +  +    E  
Sbjct: 1719 LKLYDKFSSSNVKEEISTIVKADESEPSTSQPKATRHVFQALQYLLKLCSHPLLVIGESP 1778

Query: 48   WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
               +                   H  K+ AL+ I+++                    +++
Sbjct: 1779 PDYIVEHLKEIGMGTGDELHELHHSPKLVALQEILQECGIGSEISSPDASAAVGQHRVLI 1838

Query: 74   AYHFNSDLARLQKAFPQGRTL-------------DKDPCTIQEWN-EGKIPLLFAHPASC 119
                 + L  ++K   Q                 DK    ++ +N +  I +L       
Sbjct: 1839 FAQHKAFLDIIEKDLFQSHMRSVTYLRLDGSVQTDKRFEIVKTFNSDPTIDVLLLTTHVG 1898

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 1899 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 1952

Query: 180  VLQRLRTKSTIQDLLLNALKK 200
            V+   R K ++ + ++N+   
Sbjct: 1953 VMSLQRFKVSVANAVINSENA 1973


>gi|294925765|ref|XP_002778999.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239887845|gb|EER10794.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1105

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 4   YHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYY-----DEEKHWKEVH----- 52
           Y          L G       +  +  V+  +  N           E    +        
Sbjct: 532 YRAIFERNKTYLSGAQKSGGPSLINLEVQLRKCCNHPFTIDGVEERELAMCQNKDQEFNR 591

Query: 53  ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K +     +++   F S L  +Q+         +          
Sbjct: 592 MIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVERLDGSATAKA 651

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N  +    L      + G G+NL    ++++ F   W+ +     ++     
Sbjct: 652 REEAIDRFNTPESSAFLFLLSTRAGGIGINLTA-ADVVIIFDSDWNPQ-----MDIQATA 705

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 706 RAHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 747


>gi|239608107|gb|EEQ85094.1| DNA repair and recombination protein RAD54 [Ajellomyces
           dermatitidis ER-3]
          Length = 795

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 497 LKAIGLLKKLCNHPDLLNLGTDLPGSEQFFPDDYVPMECRGRDRDVRSWYSGKMMVLDRM 556

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+   
Sbjct: 557 LARIRQDTNDKIVLISNYTQTLDLFERLCRTRQYGCLRLDGTMNVTKRQKLVDKFNDPNG 616

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 617 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 670

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 671 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 702


>gi|83764679|dbj|BAE54823.1| unnamed protein product [Aspergillus oryzae]
          Length = 1894

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++    L  +          +         +L N      ++ H +       
Sbjct: 1567 KLFEDFTKKEQKQLANKMGSSEKSDKEHIFQALQYMRRLCNSPALVVKDGHKQYDEVQQY 1626

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    ++       
Sbjct: 1627 LHAKNSYIRDVAHAPKLSALRDLLLDCGIGVDPPSEGDLGTGASYVSPHRALIFCQMKEM 1686

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    +  +N +     L    +  G GLNL 
Sbjct: 1687 LDIVQSEVLKKLLPSVQYLRLDGSVEATKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT 1746

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1747 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1800

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1801 KIDVASTVVN 1810


>gi|47206405|emb|CAG01534.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1491

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 74/222 (33%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-----------YDEEKHWKE 50
           + Y    +       G    +    +  ++  +  N +             Y+E+     
Sbjct: 766 RNYKALAK-------GTRGSSSGFLNIVMELKKCCNHSFLIKQPEDGETETYEEQLQAVV 818

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DP 98
               K+  L+ ++   +     +++       L  L +   + R   +            
Sbjct: 819 RGSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTRKRYPFQRLDGSIKGEIRK 878

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + +V F   W+ +      +     R 
Sbjct: 879 QALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARA 932

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 933 HRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRM 974


>gi|6319722|ref|NP_009804.1| Isw1p [Saccharomyces cerevisiae S288c]
 gi|2506238|sp|P38144|ISW1_YEAST RecName: Full=ISWI chromatin-remodeling complex ATPase ISW1
 gi|1872131|emb|CAA85208.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810576|tpg|DAA07361.1| TPA: Isw1p [Saccharomyces cerevisiae S288c]
          Length = 1129

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 439 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 498

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 499 YNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 558

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       +      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 559 QAIDDYNAPDSKKFVFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 612

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKE 201
            + G K+ V V+ L+  N+++E +L+R   K  +  L++     +LKK+
Sbjct: 613 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKK 661


>gi|221120739|ref|XP_002163131.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1024

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 81/224 (36%), Gaps = 37/224 (16%)

Query: 7   FQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHWK 49
            QR+ Y  L  ++I+  N A K          ++  +  N    +               
Sbjct: 386 MQRQWYTKLLMKDIDIVNGAGKVDRMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDQHL 445

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDK-D 97
             +  K+  L+++++K   + + +++                    Q     G+T  +  
Sbjct: 446 VDNCGKMIVLDMLLKKLKDSGSRVLIFSQMTRVLDILEDYAMWRGYQYCRLDGQTPHELR 505

Query: 98  PCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N              + G G+NL    ++++ +   W+ +     ++     R
Sbjct: 506 TAQINEFNAPGSDKFLFMLSTRAGGLGINL-ATADVVIMYDNDWNPQ-----VDLQAQDR 559

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V V+  I +NTI+E +++R   K  +  +++   +
Sbjct: 560 AHRIGQTKQVHVFKFITENTIEERIIERAEIKLRLDAVVIQQGR 603


>gi|17136368|ref|NP_476661.1| okra [Drosophila melanogaster]
 gi|74960637|sp|O76460|RAD54_DROME RecName: Full=DNA repair and recombination protein RAD54-like;
           Short=DmRAD54; AltName: Full=Protein okra; AltName:
           Full=RAD54 DNA repair protein
 gi|3264618|gb|AAC24577.1| Rad54 homolog OKR [Drosophila melanogaster]
 gi|7295868|gb|AAF51168.1| okra [Drosophila melanogaster]
 gi|220947310|gb|ACL86198.1| okr-PA [synthetic construct]
 gi|220956782|gb|ACL90934.1| okr-PA [synthetic construct]
          Length = 784

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 434 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 491

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 492 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 551

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 552 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 606

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 607 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|198473012|ref|XP_001356143.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
 gi|292630937|sp|Q29KH2|RAD54_DROPS RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|198139260|gb|EAL33203.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
          Length = 782

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 50/238 (21%)

Query: 1   MKQY------HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-- 52
           ++ Y       + +R L      +   +  + +      +L +      E+   +E    
Sbjct: 419 LQLYTNFLKSDQVRRSLA---DCKEKASLTALADITTLKKLCSHPNLICEKIAAEEKGFE 475

Query: 53  --------------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK--- 86
                                 K K L+ ++          +++  ++   L   ++   
Sbjct: 476 NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLAR 535

Query: 87  -------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLW 138
                        ++ K    +  +N+ +        +S   G  L   G N L  F   
Sbjct: 536 KRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPD 595

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+        +   + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 596 WNPAN-----DEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|134114696|ref|XP_774056.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256686|gb|EAL19409.1| hypothetical protein CNBH1020 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1514

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 85/226 (37%), Gaps = 30/226 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHD 53
           Y     + +  L     +  +  +  ++  + +N    ++  +   +          ++ 
Sbjct: 696 YKNILTKNFAVLSKGGTQQVSLMNVAMELKKASNHPYLFEGAEDRSKPANEILRGLVMNS 755

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  L++++   K++   +++       L  +         + +             +I
Sbjct: 756 GKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVRKKSI 815

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +N    P         + G G+NL    + ++ F   ++ +      +   + R  + 
Sbjct: 816 EHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQN-----DLQAMARAHRI 869

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 870 GQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 915


>gi|27819922|gb|AAL39744.2| LD35220p [Drosophila melanogaster]
          Length = 788

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 438 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 495

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 496 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 555

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 556 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 610

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 611 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 654


>gi|322710049|gb|EFZ01624.1| chromatin remodeling complex subunit (Chd3), putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1671

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DE 54
            +  + ++ + +    E  +  +  ++  +       Y E    K                
Sbjct: 1043 QLIKAIFANSKMNKKERGSLNNILMQLRKCLCHPFMYSEAIEEKHDDPVVIHRNLVEASA 1102

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
            K+  LE ++ K       +++   F   L  ++          +              I 
Sbjct: 1103 KLLLLEQMLPKLKERGHRVLIFSQFLQQLDIVEDFLAGIGYQYRRLDGQLSSLEKQRRID 1162

Query: 103  EWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +NE    I        + G G+NL    + ++     ++  +     +   ++R  + G
Sbjct: 1163 AFNEPGSAIFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIG 1216

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             K+ V  + L+ ++T++E ++Q  + K  +   L+ ++  + I
Sbjct: 1217 QKQKVLCFQLMTKDTVEERIMQIGKKKMALDHALIESMDDDEI 1259


>gi|320039340|gb|EFW21274.1| SNF2 family domain-containing protein [Coccidioides posadasii str.
           Silveira]
          Length = 797

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 499 LKAIGILKKLCNHPDLLNLSADLPGSEQLFPDDYVPPEGRGRDRDVKSWYSGKMMVLDRM 558

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T+ K    +  +N+   
Sbjct: 559 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMTVKKRQKLVDRFNDPDG 618

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 619 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 672

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K  +   ++++ +
Sbjct: 673 YRFIATGSIEEKIFQRQSHKQLLSSCVVDSAE 704


>gi|310796552|gb|EFQ32013.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 878

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 67/209 (32%), Gaps = 28/209 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEKIKAL 59
           R    +   + + A    +  ++   + N    + +                   K+  L
Sbjct: 586 RAKISEQAKKEMSAKKLGNPDMQLRLVCNSPHNFFDPWSYEGAPPVDESIVTSSGKMLML 645

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE 106
           + ++    A    +++   F + L  LQ      +              +     +    
Sbjct: 646 DRLLPTLFAKGHKVLIFSQFKTQLDILQDYCELRKWNACRLDGSVSQESRRDQIKEFNEN 705

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    + ++ F   W+ ++     +     R  + G  R V 
Sbjct: 706 PDFKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRCHRIGQTRPVI 759

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           VY L  + T++E +L     K  ++ L++
Sbjct: 760 VYRLATKGTVEEELLLSADAKRRLEKLII 788


>gi|156403967|ref|XP_001640179.1| predicted protein [Nematostella vectensis]
 gi|156227312|gb|EDO48116.1| predicted protein [Nematostella vectensis]
          Length = 1552

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y+   ++      G   +           +  ++  ++ N    +   +     H    
Sbjct: 899  LYNHMYKKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPFMFQHIEESIAEHLGFH 958

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNS-DLARLQKAFPQGRTLDK- 96
                          K + L+ I+ K   N   +++     S           +G    + 
Sbjct: 959  GGIVTGPDIYRASGKFELLDRILPKLKRNKHRVLMFCQMTSLMTILEDYFNWKGFPYLRL 1018

Query: 97   --------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        +  +N    P  +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1019 DGTTKSEDRGQLLSLFNAKDSPYFVFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1074

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G ++ V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1075 --DLQAQDRAHRIGQEKEVRVLRLMTVNSVEEKILAAARYKLNVDEKVIQA 1123


>gi|119596383|gb|EAW75977.1| chromodomain helicase DNA binding protein 6, isoform CRA_d [Homo
           sapiens]
          Length = 1877

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 32  KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 91

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 92  DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 151

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 152 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 208

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 209 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 262


>gi|114662479|ref|XP_001165654.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 2 [Pan
            troglodytes]
          Length = 2883

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|114662481|ref|XP_510966.2| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 5 [Pan
            troglodytes]
 gi|114662483|ref|XP_001165616.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 1 [Pan
            troglodytes]
          Length = 2882

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|115389990|ref|XP_001212500.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
 gi|114194896|gb|EAU36596.1| DNA repair and recombination protein RAD54 [Aspergillus terreus
           NIH2624]
          Length = 821

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 523 LKAIGILKKLCNHPDLLNLSNDLPGCEHAFPDDYVPPEGRGRDRDIKSWYSGKMMVLDRM 582

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 + K    + ++N+   
Sbjct: 583 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNVKKRQKLVDKFNDPDG 642

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 643 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 696

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 697 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 728


>gi|317138849|ref|XP_001816825.2| TBP associated factor (Mot1) [Aspergillus oryzae RIB40]
          Length = 1900

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++    L  +          +         +L N      ++ H +       
Sbjct: 1573 KLFEDFTKKEQKQLANKMGSSEKSDKEHIFQALQYMRRLCNSPALVVKDGHKQYDEVQQY 1632

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    ++       
Sbjct: 1633 LHAKNSYIRDVAHAPKLSALRDLLLDCGIGVDPPSEGDLGTGASYVSPHRALIFCQMKEM 1692

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    +  +N +     L    +  G GLNL 
Sbjct: 1693 LDIVQSEVLKKLLPSVQYLRLDGSVEATKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT 1752

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1753 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1806

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1807 KIDVASTVVN 1816


>gi|297698733|ref|XP_002826464.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Pongo abelii]
          Length = 2898

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|329663886|ref|NP_001192579.1| chromodomain-helicase-DNA-binding protein 9 [Bos taurus]
 gi|297485264|ref|XP_002694824.1| PREDICTED: kismet-like [Bos taurus]
 gi|296478067|gb|DAA20182.1| kismet-like [Bos taurus]
          Length = 2883

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1109 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1168

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1169 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1228

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1229 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1285

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1286 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1342


>gi|190348945|gb|EDK41499.2| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 42/215 (19%)

Query: 26  ASKTVKCLQLANGAVY-----------------------YDEEKHWKEVHDEKIKALEVI 62
                   +L                               E + W       ++     
Sbjct: 524 LKAIGMLKKLCTHPELLRLPEEVSGSEDILPDDYESSGRDKEIRTWYSGKFAMLERFLHQ 583

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-- 110
           I       I++  ++   L  +++                 ++K    +  +N+ +    
Sbjct: 584 IRTETDDKIVLISNYTQTLDLIERMCRYKRYQCCRLDGTMNINKRQKLVDRFNDPEGQEF 643

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N L+     W+    Q       + R  + G K+  F+Y  
Sbjct: 644 IFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQ-----QALARVWRDGQKKDCFIYRF 697

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           I+  TI+E + QR   K ++   +++  K++   +
Sbjct: 698 ISTGTIEEKIFQRQSMKLSLSSCVVDE-KEDVDRL 731


>gi|167375276|ref|XP_001739827.1| transcription regulatory protein SNF2 [Entamoeba dispar SAW760]
 gi|165896374|gb|EDR23803.1| transcription regulatory protein SNF2, putative [Entamoeba dispar
           SAW760]
          Length = 756

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKH----WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
            +      ++ N     ++ +            K+K +  ++++        ++      
Sbjct: 393 LAAIDTLRKICNHPHLINKTEDLTPETIYKESSKLKYVCDLLKQFQKEGHKALIFCQTRQ 452

Query: 80  DLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
            L  +++     +          + +K P  I ++N +  + +        G G+NL  G
Sbjct: 453 MLNIIEQMMLNEKFKYLRMDGLVSSNKRPEYISQFNNDPTVLVFILTTRVGGLGINLT-G 511

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+       ++     R  + G  R V +Y LI   TI+E + Q+   K 
Sbjct: 512 ADRVIMYDPDWNPT-----VDSQAKERTLRIGQDRDVIIYRLICSGTIEEHIYQKQMAKE 566

Query: 189 TIQDLLL 195
            + D +L
Sbjct: 567 ILSDKIL 573


>gi|73998074|ref|XP_859321.1| PREDICTED: similar to helicase, lymphoid-specific isoform 5 [Canis
           familiaris]
          Length = 739

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 465 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 524

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 525 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 584

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 585 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 638

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 639 AKRKLEKLIIH 649


>gi|260945000|ref|XP_002616798.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
 gi|238850447|gb|EEQ39911.1| hypothetical protein CLUG_04039 [Clavispora lusitaniae ATCC 42720]
          Length = 1259

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 37/227 (16%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           M+ Y     + Y  L         +  +   +  + +N    +D  +             
Sbjct: 449 MEYYRNIITKNYAALNAGVKGSQISLLNVMSELKKASNHPYLFDGAEERVLAKGGSTSRD 508

Query: 51  -------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
                  +   K+  LE ++   K     +++       L  L                G
Sbjct: 509 NVLKGLVMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRILDILGDYLSIKGYQFQRLDGG 568

Query: 92  RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +   +I  +N       +      + G G+NL    + ++ F   W+ +      +
Sbjct: 569 VPSAQRKISIDHFNSPDSKDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----D 622

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + R  + G K+ V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 623 LQAMARAHRIGQKKHVSVYRFVSKDTVEEEILERARKKMILEYAIIS 669


>gi|22775414|dbj|BAC11858.1| recombinational repair protein [Magnaporthe grisea]
          Length = 803

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W     + +  +
Sbjct: 509 LKAIGILKKLCNHPDLLNLSDDLPGSEAHWPSDYVPKESRGRDREIKPWYSGKMQVLDRM 568

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++ S L   ++                 + K    + ++N+ + 
Sbjct: 569 LARIRADTNDKIVLISNYTSTLDLFERLCRNRGYGSLRLDGTMNVTKRQKLVDKFNDPEG 628

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 629 SEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 682

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 683 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 714


>gi|258576739|ref|XP_002542551.1| hypothetical protein UREG_02067 [Uncinocarpus reesii 1704]
 gi|237902817|gb|EEP77218.1| hypothetical protein UREG_02067 [Uncinocarpus reesii 1704]
          Length = 1870

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 75/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   +L  +          +         +L N      +E H +       
Sbjct: 1541 KLFEDFTKKEQKELAKKIGSTEKEAKEHIFQALQYMRRLCNSPALVVKEGHRQYPEVQKY 1600

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    ++       
Sbjct: 1601 LSDKRSNIRDISHAPKLTALRDLLIDCGIGVDPSTEGELTTAASYVSPHRALIFCQMKEM 1660

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    + ++N +    +L    +  G GLNL 
Sbjct: 1661 LDIVQNDVLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1720

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1721 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1774

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1775 KIDVASTVVN 1784


>gi|118781335|ref|XP_311417.3| AGAP010700-PA [Anopheles gambiae str. PEST]
 gi|116130122|gb|EAA07020.3| AGAP010700-PA [Anopheles gambiae str. PEST]
          Length = 1026

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY--------DEEKHW 48
           K QRE Y  +  ++I+  N A K          ++  +  N    +            + 
Sbjct: 367 KMQREWYTKILMKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDYH 426

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
              +  K+  L+ ++   +   + +++       L  L+                   + 
Sbjct: 427 LLENAGKMVVLDKLLRKLQEQDSRVLIFSQMTRMLDILEDFCHWRGYQYCRLDGQTPHED 486

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I ++N       +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 487 RSNMIADYNAENSTKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 540

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 541 RAHRIGQKKQVRVFRLITENTVEEKIVERAEVKLKLDKLVIQQGR 585


>gi|317418651|emb|CBN80689.1| Chromodomain-helicase-DNA-binding protein 5 [Dicentrarchus labrax]
          Length = 1981

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 59/222 (26%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            K Y       +  L         +  +  +   +  N    +        V         
Sbjct: 941  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGN 1000

Query: 52   ------HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                      +    +   K     +++       L  L+          +         
Sbjct: 1001 LLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGG 1060

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1061 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ASADTVIIYDSDWNP-----HNDIQAF 1114

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1115 SRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVV 1156


>gi|281346617|gb|EFB22201.1| hypothetical protein PANDA_000001 [Ailuropoda melanoleuca]
          Length = 2901

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1110 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1169

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1170 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1229

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1230 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1286

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1287 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1343


>gi|213406021|ref|XP_002173782.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
 gi|212001829|gb|EEB07489.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
          Length = 867

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 51  VHDEKIKALEVIIE----KANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLD 95
           V   KI++   ++     +     I++   F   L            R            
Sbjct: 692 VPSSKIQSAIELVRRIRTEQPGEKILIFSQFTQFLELLSVPLQREGIRFVVYDGSMSASQ 751

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D    +  ++  + ++     +   GLNL    N +V    +++       +E   + R
Sbjct: 752 RDEAIHRFQHKESVQVMLVSLKAGSTGLNLTA-ANHVVLLDPFYNPS-----VEEQAIDR 805

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G KR V VY +I  ++I+E +      K  +    +   ++ 
Sbjct: 806 AYRIGQKREVHVYRMITADSIEERIAALQEKKRGLVRSAMAEDERR 851


>gi|195435389|ref|XP_002065674.1| GK15573 [Drosophila willistoni]
 gi|292630875|sp|B4MX21|RAD54_DROWI RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194161759|gb|EDW76660.1| GK15573 [Drosophila willistoni]
          Length = 784

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      +L +      E+   ++                 
Sbjct: 432 VRRSLADCNEK--ASLTALADITTLKKLCSHPDLIYEKMLARDKGFENSQNILPTNYKPK 489

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++      +   +++  ++   L   ++                T
Sbjct: 490 DLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMT 549

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 550 IKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 604

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|119603201|gb|EAW82795.1| chromodomain helicase DNA binding protein 9, isoform CRA_c [Homo
           sapiens]
          Length = 2349

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 576 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 635

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 636 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 695

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 696 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 752

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 753 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 809


>gi|207345444|gb|EDZ72265.1| YGL150Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 534

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K++ L+ ++ K  +    +++ +     +  +++     +              +   
Sbjct: 343 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 402

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                   +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 403 VHDWQTNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 456

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  R V VY L+ + TI+E +  R + K  +Q +++    +E
Sbjct: 457 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQE 498


>gi|50290001|ref|XP_447432.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526742|emb|CAG60369.1| unnamed protein product [Candida glabrata]
          Length = 942

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 44/217 (20%)

Query: 26  ASKTVKCLQLANGA----------------------VYYDEEKHWKEVHDEKIKALEVII 63
                   +L N                        +   + +  +     K   LE  +
Sbjct: 649 LKAIGVLKKLCNHPDLIKLDEELDNYNDLDIPDDYSIPTGKSRDVQTQFSGKFAILERFL 708

Query: 64  EK---ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
            K    +   I++  ++   L  +++                +++K    +  +N+ +  
Sbjct: 709 HKIKTESDDKIVLISNYTQTLDLIERMCRNRHYASVRLDGTMSINKRQKLVDRFNDPEGQ 768

Query: 111 --LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G G+NL  G N L+     W+    Q       + R  + G K+  F+Y
Sbjct: 769 EFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQ-----QALARVWRDGQKKDCFIY 822

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I+  TI+E + QR   K ++   +++A K++   +
Sbjct: 823 RFISTGTIEEKIYQRQSMKMSLSSCVVDA-KEDVERL 858


>gi|74181165|dbj|BAE27845.1| unnamed protein product [Mus musculus]
          Length = 1510

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 988  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1047

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1048 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1107

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1108 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1163

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1164 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|194881876|ref|XP_001975047.1| GG22110 [Drosophila erecta]
 gi|190658234|gb|EDV55447.1| GG22110 [Drosophila erecta]
          Length = 3193

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 68/183 (37%), Gaps = 19/183 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
            K      + +       +    +    K++ ++ ++ +   N   +++       L  L+
Sbjct: 1631 KLGLLHPITSAMTTQFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLE 1690

Query: 86   KAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                    +           +    ++ +N + +I        S G G+NL  G + ++F
Sbjct: 1691 AFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIF 1749

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ 
Sbjct: 1750 YDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMA 1804

Query: 195  LNA 197
            +  
Sbjct: 1805 IEG 1807


>gi|326931681|ref|XP_003211955.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like
           [Meleagris gallopavo]
          Length = 2658

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 703 KYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 762

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 763 EAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 822

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 823 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 879

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 880 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 933


>gi|316971517|gb|EFV55276.1| DNA excision repair protein ERCC-6 [Trichinella spiralis]
          Length = 1202

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 25/189 (13%)

Query: 32  CLQLANGAVYY--------DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
             +L N             +E  +++      +    + + K     I++       L  
Sbjct: 398 LRKLCNHPDLVSRAVGENSNEFGYFRRSGKMIVLHSLLKLWKQENHRILLFSQSRQMLNI 457

Query: 84  LQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNIL 132
           L+    +                    +  +N    I +L       G GL+L  G + +
Sbjct: 458 LEDFLKKRNYAHLRMDGTTAVGSRQSIVTTFNENADIFVLLLTTRVGGLGLDLT-GADRV 516

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + +   W+        +     R  + G    V VY L++  T++E +  R   K  + +
Sbjct: 517 ILYDPDWNPTT-----DAQAQERAWRLGQTSDVVVYRLVSSGTVEEKIYHRQIFKQFLMN 571

Query: 193 LLLNALKKE 201
            +L   ++ 
Sbjct: 572 RVLRNSRQR 580


>gi|215273951|sp|Q3L8U1|CHD9_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 9;
            Short=CHD-9; AltName: Full=ATP-dependent helicase CHD9;
            AltName: Full=Chromatin-related mesenchymal modulator;
            Short=CReMM; AltName: Full=Chromatin-remodeling factor
            CHROM1; AltName: Full=Kismet homolog 2; AltName:
            Full=PPAR-alpha-interacting complex protein 320 kDa;
            AltName: Full=Peroxisomal proliferator-activated receptor
            A-interacting complex 320 kDa protein
 gi|187954623|gb|AAI40816.1| CHD9 protein [Homo sapiens]
          Length = 2897

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|218195384|gb|EEC77811.1| hypothetical protein OsI_17009 [Oryza sativa Indica Group]
          Length = 909

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                +   K +AL  ++     +   +++   + + L  L+               G  
Sbjct: 680 TDEHVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTP 739

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + +    +  +N  + I        + G GLNL  G + ++   + ++ +     ++R  
Sbjct: 740 VTERQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQ-----MDRQA 793

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 794 EDRCHRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 838


>gi|33641444|gb|AAQ24287.1| chromatin remodeling factor CHROM1 [Homo sapiens]
 gi|219521584|gb|AAI44623.1| CHD9 protein [Homo sapiens]
          Length = 2897

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|293347259|ref|XP_001054095.2| PREDICTED: similar to RAD54B homolog isoform 1; RAD54, S.
           cerevisiae, homolog of, B [Rattus norvegicus]
          Length = 888

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 72/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K    +         +             +L N           KE +  + +  
Sbjct: 536 IELYRKLLSSQSVRFCLQGLLGNSAHLICIGALKKLCNHPRLLFSFVKGKEFNSSRDENE 595

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLAR 83
           E  + +                                         +I+  ++   L  
Sbjct: 596 ERSLCQGLLTVFPAGYNLLQLSESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNL 655

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNI 131
           L++                 + +    +  +N       +      + G GLNL  GG+ 
Sbjct: 656 LEEVCKCHGYACARLDGQTPVSQRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSH 714

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   + R  + G K  V VY L+   TI+E + QR  +K  + 
Sbjct: 715 LILYDIDWNPAT-----DIQAMARVWRDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLS 769

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 770 GAVVDLTR 777


>gi|151945386|gb|EDN63629.1| ATPase component of a two subunit chromatin remodeling complex
           [Saccharomyces cerevisiae YJM789]
          Length = 1120

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|297283992|ref|XP_002808345.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Macaca mulatta]
          Length = 2901

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDAYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|291408167|ref|XP_002720326.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1-like isoform 1 [Oryctolagus
           cuniculus]
          Length = 1053

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 52/245 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 412 IKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 471

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 472 PPYTTDEHIVNNSGKMLVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 531

Query: 96  -------------------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
                                   I+ +N       +      + G G+NL    ++++ 
Sbjct: 532 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSKFIFMLSTRAGGLGINL-ASADVVIL 590

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +     ++   + R  + G K+ V V+ LI  NT++E +++R   K  +  ++
Sbjct: 591 YDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 645

Query: 195 LNALK 199
           +   +
Sbjct: 646 IQQGR 650


>gi|224104242|ref|XP_002313369.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222849777|gb|EEE87324.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1748

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKH------------- 47
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 856  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDISTNDSSK 915

Query: 48   --WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                 +   K+  L+ ++ + +     +++       L  + +         +       
Sbjct: 916  LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDIIAQYMSLRGFQFQRLDGSTK 975

Query: 98   ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 976  AELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 1029

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1030 AMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEG 1080


>gi|118083556|ref|XP_416595.2| PREDICTED: similar to MGC81081 protein [Gallus gallus]
          Length = 1178

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 69/243 (28%)

Query: 22   AFNSASKTVKCLQLANGAVYY--------------------------------------- 42
              +  S  ++  Q                                               
Sbjct: 929  TAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLSIEEQLSALTLSELQTPDSKSTV 988

Query: 43   -----------DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA--------- 82
                        E           +  L+ I   +     +V   + S L          
Sbjct: 989  YLNGTAFNTDLFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRL 1048

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    ++E+N       ++     + G GLNL  GGN L    + W
Sbjct: 1049 GLKYSMLDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLT-GGNHLFLLDMHW 1107

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q  +RI      + G K+ V ++  + + T++E +LQ    K  +   +L A K
Sbjct: 1108 NPALEDQACDRI-----YRVGQKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVL-AGK 1161

Query: 200  KET 202
             ET
Sbjct: 1162 GET 1164


>gi|114631873|ref|XP_001151526.1| PREDICTED: helicase, lymphoid-specific isoform 14 [Pan troglodytes]
          Length = 923

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 610 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 669

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 670 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 729

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 730 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 783

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 784 AKRKLEKLIIH 794


>gi|148710305|gb|EDL42251.1| mCG18716, isoform CRA_b [Mus musculus]
          Length = 2582

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +    +        
Sbjct: 1061 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHI 1120

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1121 IPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1180

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1181 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1237

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1238 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1290


>gi|58271342|ref|XP_572827.1| transcription regulator [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57229086|gb|AAW45520.1| transcription regulator, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1519

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 85/226 (37%), Gaps = 30/226 (13%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------VHD 53
           Y     + +  L     +  +  +  ++  + +N    ++  +   +          ++ 
Sbjct: 701 YKNILTKNFAVLSKGGTQQVSLMNVAMELKKASNHPYLFEGAEDRSKPANEILRGLVMNS 760

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  L++++   K++   +++       L  +         + +             +I
Sbjct: 761 GKMVCLDMLLSRLKSDGHRVLIFSQMVRLLDIISDYMTARGYVHQRLDGTVPSDVRKKSI 820

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +N    P         + G G+NL    + ++ F   ++ +      +   + R  + 
Sbjct: 821 EHFNAPGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDYNPQN-----DLQAMARAHRI 874

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G +R V ++ L+++ TI+E +L+R   K  ++  ++N +     H+
Sbjct: 875 GQQRHVSIFRLVSKGTIEEDILERAMRKMLLEYAIINKMDTTGAHI 920


>gi|73949862|ref|XP_863483.1| PREDICTED: similar to chromodomain helicase DNA binding protein 9
            isoform 4 [Canis familiaris]
          Length = 2886

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1110 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1169

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1170 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1229

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1230 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1286

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1287 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1343


>gi|119392064|ref|NP_963999.2| chromodomain-helicase-DNA-binding protein 8 [Mus musculus]
 gi|123778258|sp|Q09XV5|CHD8_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Axis duplication inhibitor; Short=Duplin
 gi|77744590|gb|ABB02259.1| chromodomain helicase DNA binding protein 8 [Mus musculus]
          Length = 2582

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +    +        
Sbjct: 1061 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHI 1120

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1121 IPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1180

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1181 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1237

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1238 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1290


>gi|326912863|ref|XP_003202765.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Meleagris gallopavo]
          Length = 861

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 69/215 (32%), Gaps = 26/215 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDE 54
           K Y     +     +G         +   +  +       ++       E          
Sbjct: 257 KYYKAILTKDLDAFEGGTGRKVTLQNVLTQLRKCVAHPYLFNGVEPEPFEIGDHIIEASG 316

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++         +++       L  LQ                   ++    I+
Sbjct: 317 KLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIK 376

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      +   G+NL    + ++F    ++ +      +   + R  + G  
Sbjct: 377 NFGQQPIFVFLLSTRAG-VGMNLTA-ADTVIFTDSDFNPQN-----DLQAIARAHRIGQH 429

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 430 KPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 464


>gi|258570331|ref|XP_002543969.1| rad8 protein [Uncinocarpus reesii 1704]
 gi|237904239|gb|EEP78640.1| rad8 protein [Uncinocarpus reesii 1704]
          Length = 979

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 21/166 (12%)

Query: 53  DEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------- 97
             KI+    I+ +          I+   F + L  L+    +     +            
Sbjct: 802 SAKIEKTLEILRETETRGEGEKTIIFSQFTTLLDLLEVPIMKEGWKYRRYDGSMSPIQRN 861

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++  +     ++     +   GLNL    + ++ F  +W+       IE   + R  
Sbjct: 862 EAVLEFTDSQDCKIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQAIDRAH 915

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G  R V V+ ++ +NT+++ +L+    K  + +  L+    +++
Sbjct: 916 RIGQTRPVIVHRILVENTVEDRILELQEQKRELIENALDEKASKSL 961



 Score = 35.1 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 4/41 (9%), Positives = 9/41 (21%), Gaps = 2/41 (4%)

Query: 14  DLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
            L    + A   +     ++  Q                V+
Sbjct: 571 YLDAGTVGAHYSSVLVMLLRLRQACCHPHLIQFFNDDNNVN 611


>gi|238504030|ref|XP_002383247.1| TBP associated factor (Mot1), putative [Aspergillus flavus NRRL3357]
 gi|220690718|gb|EED47067.1| TBP associated factor (Mot1), putative [Aspergillus flavus NRRL3357]
          Length = 1663

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQGENIE-----AFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++    L  +          +         +L N      ++ H +       
Sbjct: 1336 KLFEDFTKKEQKQLANKMGSSEKSDKEHIFQALQYMRRLCNSPALVVKDGHKQYDEVQQY 1395

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    ++       
Sbjct: 1396 LHAKNSYIRDVAHAPKLSALRDLLLDCGIGVDPPSEGDLGTGASYVSPHRALIFCQMKEM 1455

Query: 81   LAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L                           K    +  +N +     L    +  G GLNL 
Sbjct: 1456 LDIVQSEVLKKLLPSVQYLRLDGSVEATKRQDIVNRFNTDPSYDALLLTTSVGGLGLNLT 1515

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1516 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1569

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1570 KIDVASTVVN 1579


>gi|119570417|gb|EAW50032.1| helicase, lymphoid-specific, isoform CRA_g [Homo sapiens]
          Length = 873

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 684 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 738 AKRKLEKLIIH 748


>gi|119603200|gb|EAW82794.1| chromodomain helicase DNA binding protein 9, isoform CRA_b [Homo
            sapiens]
          Length = 2785

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|73998080|ref|XP_859428.1| PREDICTED: similar to helicase, lymphoid-specific isoform 8 [Canis
           familiaris]
          Length = 805

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 531 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 590

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 591 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 650

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 651 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 704

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 705 AKRKLEKLIIH 715


>gi|46108786|ref|XP_381451.1| hypothetical protein FG01275.1 [Gibberella zeae PH-1]
          Length = 1023

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 19/172 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL----------ARLQKAFPQ 90
            +     E+   K++ L  +I   + N   ++V   F+  +              +    
Sbjct: 833 FDIPPEAEMDSGKVRKLLELINHYQENGDRVLVFSKFSRVIELLQEVLAQQQIQHRVLMG 892

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T+++    I E+N +  IP+      + G G+NL    N ++ F    + ++     +
Sbjct: 893 STTVEERQTLIDEFNEDSDIPVFLLTTGAGGTGINLTA-ANKVIIFDQSDNPQD-----D 946

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G KR V +  LIA NTI+EL+ +  + K  + + +  A+  E
Sbjct: 947 IQAENRAHRLGQKRDVEIIRLIATNTIEELIYKACQKKIELANKVTGAVADE 998


>gi|197251949|ref|NP_075222.2| chromodomain-helicase-DNA-binding protein 8 [Rattus norvegicus]
 gi|226706290|sp|Q9JIX5|CHD8_RAT RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Axis duplication inhibitor; Short=Duplin
 gi|149033674|gb|EDL88472.1| chromodomain helicase DNA binding protein 8, isoform CRA_a [Rattus
            norvegicus]
          Length = 2581

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +    +        
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHI 1118

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|73946635|ref|XP_860206.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 16 [Canis familiaris]
          Length = 1552

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 36/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +   + +    
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVMVDPYWFVT 1022

Query: 53   ------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                    K + L+ I+ K  A    +++     S +  ++  F                
Sbjct: 1023 GVLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKS 1082

Query: 95   DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +   
Sbjct: 1083 EDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQA 1136

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1181


>gi|114662475|ref|XP_001165675.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 3 [Pan
            troglodytes]
 gi|114662477|ref|XP_001165704.1| PREDICTED: chromodomain helicase DNA binding protein 9 isoform 4 [Pan
            troglodytes]
          Length = 2898

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|114631877|ref|XP_001151592.1| PREDICTED: helicase, lymphoid-specific isoform 15 [Pan troglodytes]
          Length = 877

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 684 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 738 AKRKLEKLIIH 748


>gi|74177549|dbj|BAB31000.3| unnamed protein product [Mus musculus]
          Length = 559

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 37  NGAVYYDEEKHWKEV-HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ--- 90
           NG  +         +    K+ AL+V++   K+    +++       +  L++       
Sbjct: 337 NGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKH 396

Query: 91  --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    +  ++            I +      + G G+NL    + ++F+   W+  
Sbjct: 397 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 455

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +++  + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 456 -----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 505


>gi|71022005|ref|XP_761233.1| hypothetical protein UM05086.1 [Ustilago maydis 521]
 gi|46097644|gb|EAK82877.1| hypothetical protein UM05086.1 [Ustilago maydis 521]
          Length = 1834

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 30/221 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------V 51
            + Y       Y  L G     F+  +  ++  + +N    +D  +   +          +
Sbjct: 825  RMYKAILTRNYSLLSGATTAQFSLLNIAIELKKASNHPYLFDGTEIISDNREETLKGLVM 884

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DPC 99
            H  K+  L+ ++   KA+   +++       L         +G    +            
Sbjct: 885  HSGKMVLLDKLLARLKADGHRVLIFSQMVRMLDILSDYMSLRGYIHQRLDGTVSSEIRKK 944

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +N    P         + G G+NL    + ++ F   W+ +      +   + R  
Sbjct: 945  AIEHFNAEGSPDFAFLLSTRAGGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARAH 998

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +   K  V V+  + ++T++E VL+R + K  ++  +++ +
Sbjct: 999  RLNSKFHVSVFRFLTKDTVEEDVLERAKRKMVLEYAIIHQM 1039


>gi|291409634|ref|XP_002721122.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Oryctolagus
           cuniculus]
          Length = 2717

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 766

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|330803796|ref|XP_003289888.1| hypothetical protein DICPUDRAFT_154353 [Dictyostelium purpureum]
 gi|325079999|gb|EGC33573.1| hypothetical protein DICPUDRAFT_154353 [Dictyostelium purpureum]
          Length = 1851

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 32/225 (14%)

Query: 2    KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y     + + +L      E     +   +  +  N    Y+  K   E + +      
Sbjct: 965  KYYKWILTKNFQELNKGVKGEKTTLLNIMTELKKTCNHPYLYESAKEECEQNAKDPLEAM 1024

Query: 61   -------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
                         ++  K     +++       L  L +         +           
Sbjct: 1025 IKASGKLVLLDKLLVRLKETGHRVLIFSQMVRMLDILAEYLKGRSFCFQRLDGSMSRENR 1084

Query: 98   PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N    P         + G G+NL    + +V F   W+ +      +     R
Sbjct: 1085 SKAMDRFNAVDSPDFCFLLSTKAGGLGINL-STADTVVIFDSDWNPQN-----DLQAEAR 1138

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G K  V +Y L+++ +++E +L+R + K  +  L++  ++K
Sbjct: 1139 AHRIGQKNHVNIYRLVSKKSVEEDILERAKQKMVLDHLVIQTMEK 1183


>gi|195025748|ref|XP_001986118.1| GH20710 [Drosophila grimshawi]
 gi|193902118|gb|EDW00985.1| GH20710 [Drosophila grimshawi]
          Length = 3285

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
            E   A   + K      + +       +    +    K++ ++ ++ +   +   +++  
Sbjct: 1673 EETIAQTVSPKLTLLHPIISAMTTQFPDPRLIQYDCGKLQTMDRLLRQLKVDGHRVLIFT 1732

Query: 76   HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
                 L  L+        +           +    ++ +N + +I        S G G+N
Sbjct: 1733 QMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGIN 1792

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++ 
Sbjct: 1793 LT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKA 1846

Query: 185  RTKSTIQDLLLNA 197
              K  + D+ +  
Sbjct: 1847 NQKRMLSDMAIEG 1859


>gi|300795783|ref|NP_001178684.1| RAD54 homolog B [Rattus norvegicus]
          Length = 888

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 72/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K    +         +             +L N           KE +  + +  
Sbjct: 536 IELYRKLLSSQSVRFCLQGLLGNSAHLICIGALKKLCNHPRLLFSFVKGKEFNSSRDENE 595

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLAR 83
           E  + +                                         +I+  ++   L  
Sbjct: 596 ERSLCQGLLTVFPAGYNLLQLSESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNL 655

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNI 131
           L++                 + +    +  +N       +      + G GLNL  GG+ 
Sbjct: 656 LEEVCKCHGYACARLDGQTPVSQRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSH 714

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   + R  + G K  V VY L+   TI+E + QR  +K  + 
Sbjct: 715 LILYDIDWNPAT-----DIQAMARVWRDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLS 769

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 770 GAVVDLTR 777


>gi|301114327|ref|XP_002998933.1| DNA excision repair protein ERCC-6 [Phytophthora infestans T30-4]
 gi|262111027|gb|EEY69079.1| DNA excision repair protein ERCC-6 [Phytophthora infestans T30-4]
          Length = 1052

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK---------DPCTIQEWNEGKIPLL 112
           + K     ++V     S L  L+      G    +             +  +N     L 
Sbjct: 618 LWKEQKHRVLVFTQTRSMLDILESFMSRLGHACTRLDGTTGVAERQQRLDAFNAPDSNLF 677

Query: 113 --FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G G+NL  G + +V F   W+        +     R  + G ++ V VY L
Sbjct: 678 AFLLTTRAGGIGVNL-VGADRVVVFDPDWNPST-----DVQARERAWRIGQQKPVTVYRL 731

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +   TI+E +  R   K  +   +L+  K++
Sbjct: 732 VTAGTIEEKIYHRQIFKQYLTSKVLHDAKRK 762


>gi|126277336|ref|XP_001368949.1| PREDICTED: similar to chromodomain helicase DNA binding protein 8
            [Monodelphis domestica]
          Length = 2591

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1058 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1117

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1118 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1177

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1178 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1234

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1235 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1287


>gi|259149779|emb|CAY86583.1| Isw2p [Saccharomyces cerevisiae EC1118]
          Length = 1121

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|154420998|ref|XP_001583513.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121917755|gb|EAY22527.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1468

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 31/195 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVA 74
             ++  ++ N    +   +                   K+  ++ ++ K       +++ 
Sbjct: 586 LAMQLRKVCNHPYLFPNVEEEIVKPGEDPNEAMINASGKLVFVDKLLAKLRPKGDKVLIF 645

Query: 75  YHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG--KIPLLFAHPASCGHG 122
                 L  L++                       +I ++N+    I +      + G G
Sbjct: 646 SQMVHVLDILEEYLHYRNYPYVRLDGSVVGDVRQESIDKFNDPEKDIFVFLLCTRAGGVG 705

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL      ++ +   W+ +      +     R  + G    V VY LI + T +  +  
Sbjct: 706 LNLTA-ATNVIIYDSDWNPQN-----DLQAQARCHRIGQTHDVKVYRLITRGTYESDMFT 759

Query: 183 RLRTKSTIQDLLLNA 197
           R   K  +   +L++
Sbjct: 760 RASMKLGLDQAILDS 774


>gi|114682043|ref|XP_001147951.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 1
           [Pan troglodytes]
          Length = 2228

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 222 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 281

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 282 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 341

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 342 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 399 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 452


>gi|119181658|ref|XP_001242026.1| hypothetical protein CIMG_05922 [Coccidioides immitis RS]
          Length = 835

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDEKIKA 58
           + +R     L  + I +    +  ++     N    +      +            K+  
Sbjct: 539 EIERAKTMKLAKKEIASKKLQNPIMQARLACNSPHNFYWPWDEESDIDESLVTASGKMLL 598

Query: 59  LEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQ----GRTLDKDPCTIQEWN- 105
           L+ ++    +    +++   F        D A L+           +       I  +N 
Sbjct: 599 LDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGAVSQADRQAQINAFNA 658

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  + V
Sbjct: 659 DPDYKIFLLSTRAGGLGINLTA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQTKPV 712

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 713 IVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 746


>gi|73949856|ref|XP_535304.2| PREDICTED: similar to chromodomain helicase DNA binding protein 9
            isoform 1 [Canis familiaris]
          Length = 2903

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1110 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1169

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1170 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1229

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1230 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1286

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1287 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1343


>gi|71891786|dbj|BAA20767.3| KIAA0308 [Homo sapiens]
          Length = 2759

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 985  KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1044

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1045 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1104

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1105 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1161

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1162 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1218


>gi|312213639|emb|CBX93641.1| similar to ISWI chromatin-remodeling complex ATPase ISW2
           [Leptosphaeria maculans]
          Length = 1310

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS------KTVKCLQLANGAVYY-------DEEKHWKEVH 52
           +  R      Q  +  A    +        ++  +  +                      
Sbjct: 636 EIMRATIAKEQESSDSAPTKGAWMKLMNLVMQLRKCCSHPYLLPGVAPDPYYLGDHIIRG 695

Query: 53  DEKIKALEVIIEK---ANAAPIIVAYHFNSDLAR---------------LQKAFPQGRTL 94
             K   LE +++         +++   F   L                            
Sbjct: 696 SGKFILLEKLLKHTVFEQGKKVLIFSGFTRTLDYCEDLLSLISNRGEKFRHLRLDGSSAR 755

Query: 95  DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    I+ +N+      ++     + G G+NL      ++F    W+ +          
Sbjct: 756 ARRNLDIRLFNQEGSDYKVMLLSTRAGGLGINLTS-AQDVIFLDEDWNPQITL-----QA 809

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  + V +Y L  Q T++E ++ R+R K  +   +  +++
Sbjct: 810 EARAHRIGQTKPVTIYKLCTQGTVEEQMMGRIRKKLYLSAKITESMQ 856


>gi|145616124|ref|XP_361006.2| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
 gi|145009888|gb|EDJ94544.1| hypothetical protein MGG_03549 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W     + +  +
Sbjct: 525 LKAIGILKKLCNHPDLLNLSDDLPGSEAHWPSDYVPKESRGRDREIKPWYSGKMQVLDRM 584

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++ S L   ++                 + K    + ++N+ + 
Sbjct: 585 LARIRADTNDKIVLISNYTSTLDLFERLCRNRGYGSLRLDGTMNVTKRQKLVDKFNDPEG 644

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 645 SEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 698

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 699 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 730


>gi|134077689|emb|CAK45729.1| unnamed protein product [Aspergillus niger]
          Length = 846

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 548 LKAIGLLKKLCNHPDLLNLSNDLPGCEYTFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 607

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T+ K    + ++N    
Sbjct: 608 LARIRQDTNDKIVLISNYTQTLDLFEKLCRTRGYGSLRLDGTMTVGKRQKLVDKFNNPDG 667

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 668 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 721

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 722 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 753


>gi|50310725|ref|XP_455384.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644520|emb|CAG98092.1| KLLA0F06710p [Kluyveromyces lactis]
          Length = 1096

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYYD----------EE 45
            Q++ Y  +  ++I+A N             +  ++  +  N    +D          +E
Sbjct: 381 MQKKWYKQILEKDIDAVNGSNGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 440

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                    K+    +   K   + +++    +  L  L+                   +
Sbjct: 441 HLVYNSAKLKVLDKLLKKFKEQGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTAHE 500

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I ++N       +      + G G+NL    +I+V +   W+ +      +   +
Sbjct: 501 DRINAIDDYNAPDSKKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAM 554

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V+  +  N+++E +L+R   K  +  L++   +
Sbjct: 555 DRAHRIGQKKQVRVFRFVTDNSVEEKILERATQKLKLDQLVIQQGR 600


>gi|292630953|sp|B4NXB8|RAD54_DROYA RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
          Length = 784

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 434 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKITAREKGFENSQNVLPSNYNTK 491

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 492 DLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 551

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 552 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 606

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y ++A  +I+E +LQR   K ++   +++
Sbjct: 607 MARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|302500427|ref|XP_003012207.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
 gi|291175764|gb|EFE31567.1| hypothetical protein ARB_01467 [Arthroderma benhamiae CBS 112371]
          Length = 881

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 78/218 (35%), Gaps = 28/218 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIKAL 59
             R     ++ + I +    +  ++   + N  + +                   K+  L
Sbjct: 584 MVRSNLSTIE-KEISSKKLQNPVMQARLVCNSPLNFYWPWGEDSGVDSTLITSSGKMLLL 642

Query: 60  EVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTIQEWN 105
           + ++    +    I++   F        D A   +++   R        D+        N
Sbjct: 643 DRLVPCLISKGHKILIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINSFNN 702

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  + V
Sbjct: 703 DPDYRIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPV 756

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            VY L  + TI++ +L+R  +K  ++ L++   K +++
Sbjct: 757 IVYRLATRGTIEQTLLERAGSKRRLEKLVIQKGKFKSL 794


>gi|294660619|ref|NP_853484.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284812282|gb|AAP57052.2| SNF2 family helicase [Mycoplasma gallisepticum str. R(low)]
 gi|284930981|gb|ADC30920.1| SNF2 family helicase [Mycoplasma gallisepticum str. R(high)]
 gi|284931739|gb|ADC31677.1| SNF2 family helicase [Mycoplasma gallisepticum str. F]
          Length = 1108

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 26/210 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             + + E+   +Q +           A    +  Q+       +      E  + K  A  
Sbjct: 890  QEVKEEILKIIQNKEQSRKGLGIMLAKLLNELRQICCSPKLLNPSF---EGENAKFVAAM 946

Query: 61   VIIEK--ANAAPIIVAYH-------FNSDLARLQKAFP----QGRTLDKDPCTIQEWNEG 107
             II     +    ++          F  +L +    +           +        N  
Sbjct: 947  DIINNAIKSNKKTLLFSQYLGVISLFKKELEQRNIKYFILTGDTPKEVRLQYVNDFNNAK 1006

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +  +  A   + G GLNL  G  I++ + LWW+L             R  + G +  + V
Sbjct: 1007 EPAVFIASLKAGGVGLNLT-GAEIVIHYDLWWNLALQ-----NQATDRAHRIGQRNHLQV 1060

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Y +IA +TI+E ++     K  +   L+  
Sbjct: 1061 YRIIAADTIEERIVAIQERKKELAAKLIQE 1090


>gi|222629381|gb|EEE61513.1| hypothetical protein OsJ_15806 [Oryza sativa Japonica Group]
          Length = 934

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                +   K +AL  ++     +   +++   + + L  L+               G  
Sbjct: 705 TDEHVLGSAKCQALAELLPSLANDGHRVLIFSQWTTMLDILEWTLEVIGVTYRRLDGGTP 764

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + +    +  +N  + I        + G GLNL  G + ++   + ++ +     ++R  
Sbjct: 765 VTERQTIVDTFNNDRSIFACLLSTRAGGQGLNL-IGADTVIIHDMDFNPQ-----MDRQA 818

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G ++ V +Y L+ + ++DE + +  R K  +   +L +
Sbjct: 819 EDRCHRIGQQKPVTIYRLVTKGSVDENIYEIARRKLVLDAAILQS 863


>gi|303318669|ref|XP_003069334.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109020|gb|EER27189.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 869

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDEKIKA 58
           + +R     L  + I +    +  ++     N    +      +            K+  
Sbjct: 573 EIERAKTMKLAKKEIASKKLQNPLMQARLACNSPHNFYWPWDEESDIDESLVTASGKMLL 632

Query: 59  LEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQ----GRTLDKDPCTIQEWN- 105
           L+ ++    +    +++   F        D A L+           +       I  +N 
Sbjct: 633 LDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGAVSQADRQAQINAFNA 692

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  + V
Sbjct: 693 DPDYKIFLLSTRAGGLGINLTA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQTKPV 746

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 747 IVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 780


>gi|62948072|gb|AAH94345.1| Btaf1 protein [Mus musculus]
          Length = 990

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
           ++ Y  F +        E + +                +         +L N        
Sbjct: 670 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 729

Query: 46  KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
           +H +                   H  K+ AL+ ++                       I+
Sbjct: 730 QHPEFKSTTEKLTVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSSTESGTESVVAQHRIL 789

Query: 73  VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +     S L  ++                       +    +  +N +  I +L      
Sbjct: 790 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 849

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 850 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 903

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I + +++
Sbjct: 904 KIMGLQKFKMNIANTVIS 921


>gi|296231077|ref|XP_002807783.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 9-like [Callithrix jacchus]
          Length = 2896

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|302922109|ref|XP_003053398.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
 gi|256734339|gb|EEU47685.1| hypothetical protein NECHADRAFT_65429 [Nectria haematococca mpVI
           77-13-4]
          Length = 1013

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQ 90
            +     E+   K+K L  +I++   N   ++V   F+  +              +    
Sbjct: 823 FDVPEETEMDSGKVKKLLELIQQYQENGDRVLVFSKFSRVIELLQEVLSLKGIQHRILMG 882

Query: 91  GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + +    I E+N+  +IP+      + G G+NL    N ++ F    + ++     +
Sbjct: 883 NTNVSERQTLIDEFNDDPEIPVFLLTTGAGGTGINLTA-ANKVIIFDQSDNPQD-----D 936

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G KR V +  LIA +TI+EL+ +  + K  + + +  A++ E
Sbjct: 937 IQAENRAHRLGQKRDVEIIRLIASHTIEELIYKACQKKIELANKVTGAVEDE 988


>gi|170584903|ref|XP_001897230.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158595354|gb|EDP33914.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 1595

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 77/222 (34%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y +L      + N      ++  +  N +         +E          
Sbjct: 669 QYYKWILTKNYKELSKGVKGSINGFVNLVMELKKCCNHSSLVRSYDQAEEGADARLQQLL 728

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ +       +++       L  +Q+     R   +            
Sbjct: 729 KSSGKLILLDKLLCRLQETGHRVLIFSQMVMMLDIMQEYLQLRRFPSQRLDGSMRSDLRK 788

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N    P         + G G+NL    + ++ F   W+ +      +   ++R 
Sbjct: 789 AALDHFNAPNSPDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRA 842

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 843 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLIIQRM 884


>gi|311271626|ref|XP_001925252.2| PREDICTED: TATA-binding protein-associated factor 172 [Sus scrofa]
          Length = 1877

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1557 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1616

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1617 QHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESIVAQHRIL 1676

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1677 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1736

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1737 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1790

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1791 KIMGLQKFKMNIANTVIS 1808


>gi|297687009|ref|XP_002821019.1| PREDICTED: TATA-binding protein-associated factor 172-like [Pongo
            abelii]
          Length = 1849

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 75/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1529 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1588

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
             H +                   H  K+ AL+ ++                       I+
Sbjct: 1589 HHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 1648

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1709 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1762

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1763 KIMGLQKFKMNIANTVIS 1780


>gi|198458681|ref|XP_002138575.1| GA24314 [Drosophila pseudoobscura pseudoobscura]
 gi|198136427|gb|EDY69133.1| GA24314 [Drosophila pseudoobscura pseudoobscura]
          Length = 3240

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
             DL    I A  +     + +Q   G +   +      +   K+    V+I       + 
Sbjct: 1671 LDLLHPIISAMTTQFPDPRLIQYDCGKLQTLDR----LLRQLKVDGHRVLIFTQMTKMLD 1726

Query: 73   VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
            V   F +    +         +++    ++ +N + +I        S G G+NL  G + 
Sbjct: 1727 VLEAFLNHHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADT 1785

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + 
Sbjct: 1786 VIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKANQKRMLS 1840

Query: 192  DLLLNA 197
            D+ +  
Sbjct: 1841 DMAIEG 1846


>gi|163644482|gb|AAC17559.2| Temporarily assigned gene name protein 192 [Caenorhabditis elegans]
          Length = 2963

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y       +  L      A +  +  ++  +  N     +  +               
Sbjct: 1445 KFYRAILERNFSHLCKGT-SAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWD 1503

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  +E ++ K   +   +++       L  L++         +  
Sbjct: 1504 EETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERI 1563

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ F   W+ +    
Sbjct: 1564 DGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1619

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
              +     R  + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E  
Sbjct: 1620 --DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGT 1677

Query: 204  HV 205
             +
Sbjct: 1678 AL 1679


>gi|216548186|ref|NP_003570.2| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|216548193|ref|NP_001136020.1| DNA repair and recombination protein RAD54-like [Homo sapiens]
 gi|51316508|sp|Q92698|RAD54_HUMAN RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=hHR54; Short=hRAD54
 gi|47777671|gb|AAT38113.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|56204069|emb|CAI22117.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111307699|gb|AAI21061.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|111309424|gb|AAI21060.1| RAD54-like (S. cerevisiae) [Homo sapiens]
 gi|119627335|gb|EAX06930.1| RAD54-like (S. cerevisiae), isoform CRA_b [Homo sapiens]
          Length = 747

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPAEELLEGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFVGALDL 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|291404474|ref|XP_002718566.1| PREDICTED: helicase, lymphoid-specific [Oryctolagus cuniculus]
          Length = 837

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELQKRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 623 MTRMLDILMDYCHLRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|221106529|ref|XP_002167321.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 352

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 20/166 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
              K+  L+ ++   K     +++       +  L++     +                 
Sbjct: 40  DSGKLLVLDKLLTRLKKEDHRVLIYSQMTKMIDILEEFMKFRKHSYMRLDGSSKISDRRD 99

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + ++    I        + G G+NL    + ++F+   W+       +++  + R  + 
Sbjct: 100 MVSDFQSRDIFAFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRL 153

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETI 203
           G  + V VY L+ + T++E +L R R KS IQ+++++     KE +
Sbjct: 154 GQTKQVTVYRLVTKGTVEEKILNRAREKSEIQNIVISGGQFNKEVL 199


>gi|242012609|ref|XP_002427022.1| predicted protein [Pediculus humanus corporis]
 gi|212511267|gb|EEB14284.1| predicted protein [Pediculus humanus corporis]
          Length = 1570

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLF 113
            K     +++       +  L++                +  ++        +   I +  
Sbjct: 1150 KEGGHRVLIYSQMTRMIDLLEEYMWHRKHTYMRLDGSSKISERRDMVADFQSRADIFVFL 1209

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    + ++F+   W+       +++  + R  + G  + V VY LI +
Sbjct: 1210 LSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICK 1263

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             TI+E +LQR R KS IQ ++++    +  H+
Sbjct: 1264 GTIEERILQRAREKSEIQRMVISGGNFKPDHL 1295


>gi|193203140|ref|NP_491426.2| Temporarily Assigned Gene name family member (tag-192)
            [Caenorhabditis elegans]
          Length = 2967

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y       +  L      A +  +  ++  +  N     +  +               
Sbjct: 1449 KFYRAILERNFSHLCKGT-SAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWD 1507

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  +E ++ K   +   +++       L  L++         +  
Sbjct: 1508 EETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERI 1567

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ F   W+ +    
Sbjct: 1568 DGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1623

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
              +     R  + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E  
Sbjct: 1624 --DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGT 1681

Query: 204  HV 205
             +
Sbjct: 1682 AL 1683


>gi|158258659|dbj|BAF85300.1| unnamed protein product [Homo sapiens]
          Length = 747

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPAEELLEGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFVGALDL 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|320034447|gb|EFW16391.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Coccidioides posadasii str. Silveira]
          Length = 869

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 26/214 (12%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDEKIKA 58
           + +R     L  + I +    +  ++     N    +      +            K+  
Sbjct: 573 EIERAKTMKLAKKEIASKKLQNPLMQARLACNSPHNFYWPWDEESDIDESLVTASGKMLL 632

Query: 59  LEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQ----GRTLDKDPCTIQEWN- 105
           L+ ++    +    +++   F        D A L+           +       I  +N 
Sbjct: 633 LDRLVPCLLSKGHKVLIFSQFKTQLDILQDWAYLRNWNCCRIDGAVSQADRQAQINAFNA 692

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  + V
Sbjct: 693 DPDYKIFLLSTRAGGLGINLTA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQTKPV 746

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY L  + T+++ +L+R  +K  ++ L++   K
Sbjct: 747 IVYRLATRGTVEQTLLERADSKRRLEKLVIQKGK 780


>gi|195161916|ref|XP_002021802.1| GL26701 [Drosophila persimilis]
 gi|292630865|sp|B4GS98|RAD54_DROPE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|194103602|gb|EDW25645.1| GL26701 [Drosophila persimilis]
          Length = 782

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 76/238 (31%), Gaps = 50/238 (21%)

Query: 1   MKQY------HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--------------- 39
           ++ Y       + +R L      +   +  + +      +L +                 
Sbjct: 419 LQLYTNFLKSDQVRRSLA---DCKEKASLTALADITTLKKLCSHPNLICEKIAAGEKGFE 475

Query: 40  -------VYYDEEKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQ---- 85
                  + Y+ +         K K L+ ++          +++  ++   L   +    
Sbjct: 476 NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLAR 535

Query: 86  ------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLW 138
                        ++ K    +  +N+ +        +S   G  L   G N L  F   
Sbjct: 536 KRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPD 595

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           W+        +   + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 596 WNPAN-----DEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 648


>gi|190407604|gb|EDV10871.1| ATPase component of a two subunit chromatin remodeling complex
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1121

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|6324879|ref|NP_014948.1| Isw2p [Saccharomyces cerevisiae S288c]
 gi|74676479|sp|Q08773|ISW2_YEAST RecName: Full=ISWI chromatin-remodeling complex ATPase ISW2;
           AltName: Full=Imitation switch protein 2
 gi|1420671|emb|CAA99622.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285815176|tpg|DAA11069.1| TPA: Isw2p [Saccharomyces cerevisiae S288c]
          Length = 1120

 Score = 96.4 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|307180140|gb|EFN68184.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Camponotus floridanus]
          Length = 1960

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 974  KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETS 1033

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                   K+  L  +++K   +   +++       L              +      T  
Sbjct: 1034 ALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGS 1093

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1094 QRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1147

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1148 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1189


>gi|297490772|ref|XP_002698437.1| PREDICTED: helicase, lymphoid specific-like [Bos taurus]
 gi|296472735|gb|DAA14850.1| helicase, lymphoid specific-like [Bos taurus]
          Length = 784

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 510 MMLLRKCCNHPYLIEYPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQ 569

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    I  +N +  + +      + G G+NL
Sbjct: 570 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRAGGLGINL 629

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  R V VY L+  NTID+ +++R  
Sbjct: 630 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAA 683

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 684 AKRKLEKLIIH 694


>gi|207340908|gb|EDZ69113.1| YOR304Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1121

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|190347724|gb|EDK40055.2| hypothetical protein PGUG_04153 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 990

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYDEEK--------H 47
             QR  Y  +  ++I+A N A+K           ++  +  N    ++  +         
Sbjct: 373 DMQRSWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 432

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
               + EK+K L+ ++   ++  + +++    +  L                        
Sbjct: 433 HLVYNAEKMKILDQLLKKFQSEGSRVLIFSQMSRMLDILEDYCAFREFQYCRIDGQTDHA 492

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 493 DRVNAIDEYNKPGSEKFVFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAM 546

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +N I+E VL+R   K  +  L++   +
Sbjct: 547 DRAHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQQGR 592


>gi|987661|dbj|BAA05142.1| transcriptional activator hSNF2a [Homo sapiens]
          Length = 1572

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 977  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1036

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1037 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1096

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1097 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-AHTVVIFDSDWNPHQ--- 1152

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1153 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|1495483|emb|CAA66379.1| RAD54 [Homo sapiens]
          Length = 747

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPAEELLEGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFVGALDL 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|195470937|ref|XP_002087763.1| GE14966 [Drosophila yakuba]
 gi|194173864|gb|EDW87475.1| GE14966 [Drosophila yakuba]
          Length = 772

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 422 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKITAREKGFENSQNVLPSNYNTK 479

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 480 DLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 539

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 540 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 594

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y ++A  +I+E +LQR   K ++   +++
Sbjct: 595 MARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIID 638


>gi|308806421|ref|XP_003080522.1| chromatin-remodelling complex ATPase ISWI2 (ISS) [Ostreococcus
           tauri]
 gi|116058982|emb|CAL54689.1| chromatin-remodelling complex ATPase ISWI2 (ISS) [Ostreococcus
           tauri]
          Length = 1036

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 74/223 (33%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q+  Y  +  ++I+  NS        +  ++  +  N    +                
Sbjct: 414 EMQKTFYKRILQKDIDIVNSGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYITGDHLI 473

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDK-DP 98
               K+  L+ ++       + +++                  R Q     G T  +   
Sbjct: 474 ESSGKLALLDKLLPRLMERGSRVLIFSQMTRLLDILEDYMMYRRYQYCRIDGSTDGETRE 533

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N+             + G G+NL    + ++ +   W+ +     ++   + R 
Sbjct: 534 NHIDAFNKEGSEKFAFLLSTRAGGLGINL-ATADTVIIYDSDWNPQ-----MDLQAMDRA 587

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+      +++E V+++   K  +  L++   +
Sbjct: 588 HRIGQKKEVQVFRFCTDGSVEEKVIEKAYKKLALDALVIQQGR 630


>gi|42407261|dbj|BAD10847.1| lymphoid specific helicase variant4 [Homo sapiens]
 gi|119570421|gb|EAW50036.1| helicase, lymphoid-specific, isoform CRA_k [Homo sapiens]
          Length = 708

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 434 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 493

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 494 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 553

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 554 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 607

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 608 AKRKLEKLIIH 618


>gi|256272525|gb|EEU07504.1| Isw2p [Saccharomyces cerevisiae JAY291]
          Length = 1121

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 482

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K   + +++    +  L  L+                 + 
Sbjct: 483 EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSH 542

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N+      +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 543 EERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVT-ADTVILFDSDWNPQA-----DLQA 596

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + +N I+E V++R   K  +  L++ 
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 640


>gi|226531237|ref|NP_001141865.1| chromatin complex subunit A [Zea mays]
 gi|194706224|gb|ACF87196.1| unknown [Zea mays]
          Length = 444

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 76/214 (35%), Gaps = 28/214 (13%)

Query: 4   YHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIK 57
           Y +   RE      G   +A  + S  ++  +  N    + E  +  +         K +
Sbjct: 9   YEQVTSREKVALGFGLRSKALQNLS--MQLRKCCNHPYLFVEHYNMYQREEIVRASGKFE 66

Query: 58  ALEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
            L+ ++ K       +++                               ++    + ++N
Sbjct: 67  LLDRLLPKLQRAGHRVLLFSQMTKLLDVLEIYLQMYNFKYMRLDGSTKTEERGRLLADFN 126

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             + +  +      + G GLNLQ   + ++ F   W+ +     +++    R  + G K 
Sbjct: 127 KKDSEYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKN 180

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E +L R + K  I   ++ A
Sbjct: 181 EVRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQA 214


>gi|67609493|ref|XP_667013.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658094|gb|EAL36778.1| hypothetical protein Chro.60441 [Cryptosporidium hominis]
          Length = 1102

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           + Y     +    LQ +         +  ++  +  N    +D                +
Sbjct: 435 RLYKDLLSKNVDALQEKEGGGKLRLINLAMQLRKACNHPYLFDGYEDKSVDPFGEHVVEN 494

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCT 100
             K+  ++ +I+K  +  + I++             +               + D     
Sbjct: 495 SGKMVLMDRLIKKLVSGGSRILIFSQMARVLDILEDYCHMRGFPYCRIDGNTSGDDRDRQ 554

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R  +
Sbjct: 555 ISEFNKPNSEKLVFLLSTRAGGLGINL-ATADIVILYDSDWNPQA-----DLQAMDRAHR 608

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K+ VFV+ L  ++TI+E +++R   K  +   ++   +
Sbjct: 609 IGQKKPVFVFRLCHEHTIEEKIIERANLKLQLDFAIIQQGR 649


>gi|325181909|emb|CCA16363.1| ChromodomainhelicaseDNAbinding protein 8 putative [Albugo laibachii
            Nc14]
          Length = 2334

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 34/223 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-----EEKHWKEVHDEK 55
            K Y          L  G      N  +  ++  +  N           E     E+   K
Sbjct: 1470 KYYRAIFERNRAFLNQGAAGSVANLVNVEMELRKCCNHPFLIRGVEEKECSRLNEIQRSK 1529

Query: 56   ----------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                      +    +   +A    I++   F   L  ++          +         
Sbjct: 1530 ILVQASGKTVLLDKMLAKFRAEEKKILIFSQFKMMLDVIEDLCHLRGYQIERMDGSVRGN 1589

Query: 98   --PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N  K           + G G+NL    ++++ +   W+ +      +   V
Sbjct: 1590 LRQAAIDRFNNPKSDTFAFLLSTRAGGVGINL-IAASVVILYDSDWNPQN-----DLQAV 1643

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G  ++V +Y L+ + T +  +      K  +   +  
Sbjct: 1644 ARCHRIGQTKSVNIYRLVTKKTYEAQMFDIASKKLGMHHAVFE 1686


>gi|145339485|ref|NP_190996.2| RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA binding / binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
          Length = 2038

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 74/270 (27%)

Query: 1    MKQYHKFQ----RELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYYD 43
            +K Y +F     ++    +   +  A              +        L+L +  +   
Sbjct: 1702 LKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL 1761

Query: 44   EEKHWKEV----------------------HDEKIKALEVIIEKAN-------------- 67
             +K  + V                      H  K+ AL+ I+E+                
Sbjct: 1762 GDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSV 1821

Query: 68   -AAPIIVAYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
                +++                     +            +K    ++ +N +  I +L
Sbjct: 1822 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1881

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL    + LVF    W+        +   + R  + G KR V V+ LI 
Sbjct: 1882 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DHQAMDRAHRLGQKRVVNVHRLIM 1935

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + T++E V+   + K ++ + ++NA     
Sbjct: 1936 RGTLEEKVMSLQKFKVSVANTVINAENASM 1965


>gi|311245835|ref|XP_001925950.2| PREDICTED: probable global transcription activator SNF2L2 [Sus
            scrofa]
          Length = 1515

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 902  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 961

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 962  NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1021

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1022 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1077

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1078 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1126


>gi|73998076|ref|XP_859353.1| PREDICTED: similar to helicase, lymphoid-specific isoform 6 [Canis
           familiaris]
          Length = 835

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 561 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 620

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 621 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 680

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 681 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 734

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 735 AKRKLEKLIIH 745


>gi|313228968|emb|CBY18120.1| unnamed protein product [Oikopleura dioica]
          Length = 996

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q+  Y  +  ++I+  N+            +  +   +  N    +            
Sbjct: 360 EMQKNWYKKILLKDIDILNTGGDKGGGKMRLMNILMHLRKCTNHPYLFDGAEPGPPYTTD 419

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KAN   +++   F S L   +               G   
Sbjct: 420 QHIVDNCGKMVILDKLLKKCKANGDRVLLFTQFTSMLDIFEDYCLWRDYKYCRLDGGTDH 479

Query: 95  DKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                +I  +N              + G G+NL    N+++ +   W+ +      +   
Sbjct: 480 ADRTESIDAYNAPNSEKFLFMLSTKAGGLGINLMT-ANVVIIYDSDWNPQN-----DLQA 533

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G K+ V+VY +I   ++DE +++R   K  +  +++ + +
Sbjct: 534 MDRAHRIGQKKQVYVYRMITDESVDERIIERSELKMRLDSVVIQSGR 580


>gi|115644354|ref|XP_001201170.1| PREDICTED: similar to E1a binding protein P400 [Strongylocentrotus
            purpuratus]
 gi|115956564|ref|XP_001178919.1| PREDICTED: similar to E1a binding protein P400 [Strongylocentrotus
            purpuratus]
          Length = 3330

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEK--AN 67
            +        N+ S  +K        +         E+        K++ ++ ++ K    
Sbjct: 1951 VLNSERTLMNTLSSELKPKSWCLHPIENLMRLDMPELRLIQYDCGKLQTMDGLLRKLKTE 2010

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHP 116
             + +++       L  L++       +           +    ++ +N + +I       
Sbjct: 2011 GSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMMERFNKDPRIFCFILST 2070

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             S G G+NL  G N ++F+   W+       ++     R  + G  R V +Y LI++ +I
Sbjct: 2071 RSGGMGVNLT-GANAVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISEMSI 2124

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E +L++   K  + D+ +  
Sbjct: 2125 EENILKKSNQKRLLIDVSIEG 2145


>gi|52138743|ref|NP_001004446.1| probable global transcription activator SNF2L2 [Rattus norvegicus]
 gi|49616741|gb|AAT67217.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a2 [Rattus norvegicus]
          Length = 1597

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 984  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1043

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1044 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1103

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1104 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1159

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1160 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1208


>gi|321263641|ref|XP_003196538.1| helicase [Cryptococcus gattii WM276]
 gi|317463015|gb|ADV24751.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 926

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 76/219 (34%), Gaps = 34/219 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKA 58
           RE       +++      +  ++  ++++    +D                     K+  
Sbjct: 592 REWALKQATKHVNNMRLQNLVMQLRKISSHPYLFDWPSDPVTGELVVDDNLVNASGKMLL 651

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN 105
           L  +++        +++   F + L                      + +     + E+N
Sbjct: 652 LNRLLDALFRKGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTSQESRREQMDEFN 711

Query: 106 EGK-----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            GK       L      + G G+NL    + ++FF   W+ +     ++     R  + G
Sbjct: 712 GGKDDPDACKLFLLSTRAGGLGINLVS-ADTVIFFDQDWNPQ-----MDLQAQDRAHRIG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V V+ L++ +TI+  +L +   K  ++ L+++  K
Sbjct: 766 QTKPVLVFRLVSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|114631891|ref|XP_001150939.1| PREDICTED: helicase, lymphoid-specific isoform 5 [Pan troglodytes]
          Length = 708

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 434 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 493

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 494 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 553

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 554 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 607

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 608 AKRKLEKLIIH 618


>gi|312221998|emb|CBY01938.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1469

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 511 LKVIGMLKKLCNHPDLLNLPEDLPGCEDVLPDDFVQKDARGRDREVKVWYSGKMAVLDRM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L                      + K    + ++N+ + 
Sbjct: 571 LARIRAETNDKIVLISNYTQTLDLFAALCRSRGYGALRLDGTMNVSKRQKLVDKFNDPEG 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           P  +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 PEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  I   TI+E V QR   K ++   ++++ +
Sbjct: 685 YRFITTGTIEEKVFQRQSHKQSLSSCVVDSAE 716


>gi|297279826|ref|XP_001093777.2| PREDICTED: chromodomain helicase DNA binding protein 1-like [Macaca
           mulatta]
          Length = 617

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 25/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 7   KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLIEASG 66

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++    +    +++       L  LQ                   ++    I+
Sbjct: 67  KLYLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIK 126

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +  I +      + G G+NL    + ++F    ++ +      +     R  + G  
Sbjct: 127 NFGQQPIFVFLLSTRAGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQN 180

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++V V  LI ++T++E+V ++  +K  + ++++  
Sbjct: 181 KSVKVIRLIGRDTVEEIVSRKAASKLQLTNMIIEG 215


>gi|197691963|dbj|BAG70033.1| homolog of human BTAF1 [Arabidopsis thaliana]
          Length = 2045

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 74/270 (27%)

Query: 1    MKQYHKFQ----RELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYYD 43
            +K Y +F     ++    +   +  A              +        L+L +  +   
Sbjct: 1709 LKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL 1768

Query: 44   EEKHWKEV----------------------HDEKIKALEVIIEKAN-------------- 67
             +K  + V                      H  K+ AL+ I+E+                
Sbjct: 1769 GDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSV 1828

Query: 68   -AAPIIVAYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
                +++                     +            +K    ++ +N +  I +L
Sbjct: 1829 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1888

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL    + LVF    W+        +   + R  + G KR V V+ LI 
Sbjct: 1889 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DHQAMDRAHRLGQKRVVNVHRLIM 1942

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + T++E V+   + K ++ + ++NA     
Sbjct: 1943 RGTLEEKVMSLQKFKVSVANTVINAENASM 1972


>gi|66358754|ref|XP_626555.1| SWI/SNF related transcriptional regulator ATpase [Cryptosporidium
            parvum Iowa II]
 gi|46227736|gb|EAK88656.1| SWI/SNF related putative transcriptional regulator ATpase
            [Cryptosporidium parvum Iowa II]
          Length = 1552

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 26/215 (12%)

Query: 3    QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y + +++     DL    I+  + ++  ++  ++ N    + EE   ++    ++    
Sbjct: 833  VYDQIKQKAVHSMDLSSGKIQYRSVSNTIMQLRKIVNHPYLFVEEYLIEDDDIFRVSCKF 892

Query: 61   VIIEKA------NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW 104
             ++++           +++       +                     T+ +    + E+
Sbjct: 893  EVLDRMLPKLIRFRHKVLIFCQMTQLMDILGDFLDYRGIEHHRLDGTMTIQERKEKMDEF 952

Query: 105  NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            N       +      + G GLNLQ   + ++ F   W+  +     +    +R  + G K
Sbjct: 953  NSPDSEKFVFVLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-----DLQAQSRAHRMGQK 1006

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V V   ++ + ++ELVL+R + K  I   ++ A
Sbjct: 1007 NEVRVLRFVSISGVEELVLKRAQKKLEIDHKIIQA 1041


>gi|332022432|gb|EGI62740.1| Chromodomain-helicase-DNA-binding protein 7 [Acromyrmex echinatior]
          Length = 4236

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 69/214 (32%), Gaps = 30/214 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y       +  L      A   N  +  ++  +        +           K+  +
Sbjct: 1996 KYYRGILERNFSFLAKGTTSANIPNLMNTMMELRKCCIHLFLVN--------SSGKMVLI 2047

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG 107
            + ++ K  A+   +++       L  L+      +   +              I  +++ 
Sbjct: 2048 DKLLPKLKASGHRVLIFSQMVKCLDLLEDYLLYKKYPYERIDGRIRGNLRQAAIDRYSKP 2107

Query: 108  KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    + ++ +   W+ +      +     R  + G ++ V
Sbjct: 2108 DSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN-----DLQAQARCHRIGQQKMV 2161

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             VY L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2162 KVYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2195


>gi|3329473|gb|AAC26857.1| RAD54 DNA repair protein [Drosophila melanogaster]
          Length = 628

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 42/224 (18%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------- 52
            R    D   +   +  + +      ++ +      E+   +E                 
Sbjct: 278 VRRSLADCNEK--ASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNYKPK 335

Query: 53  ------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                   K   L+ ++          +++  ++   L   ++                +
Sbjct: 336 DLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMS 395

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIG 152
           + K    +  +N+ +        +S   G  L   G N L  F   W+        +   
Sbjct: 396 IKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DEQA 450

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 451 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 494


>gi|296220834|ref|XP_002756505.1| PREDICTED: lymphoid-specific helicase isoform 7 [Callithrix
           jacchus]
          Length = 707

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 433 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 492

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 493 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 552

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 553 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 606

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 607 AKRKLEKLIIH 617


>gi|317031306|ref|XP_001393160.2| DNA repair protein rhp54 [Aspergillus niger CBS 513.88]
          Length = 813

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 515 LKAIGLLKKLCNHPDLLNLSNDLPGCEYTFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 574

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T+ K    + ++N    
Sbjct: 575 LARIRQDTNDKIVLISNYTQTLDLFEKLCRTRGYGSLRLDGTMTVGKRQKLVDKFNNPDG 634

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 635 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 688

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 689 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 720


>gi|115921268|ref|XP_787494.2| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115974812|ref|XP_001181201.1| PREDICTED: similar to MGC81308 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 629

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 25/178 (14%)

Query: 39  AVYYDEEKHWKEV--HDEKIKALEVIIEKAN-----AAPIIVAYHFNSDLAR-------- 83
            +Y  E    + +  H  K+  L  ++   +        +++  ++   L          
Sbjct: 395 PIYPPEYTEGRPLLAHCGKLCVLSEMLRAMHADPTRRERLVLVSNYTQTLDILQALCSIE 454

Query: 84  --LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         K    ++ +N       +      + G GLNL  G + L+ + + W
Sbjct: 455 GYQFCRLDGSTPTAKRQSIVEHFNSSYAKETIFLLSSKAGGVGLNL-IGASRLLLYDIDW 513

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G K+ V++Y LI   TI+E + QR  +K ++   +++A
Sbjct: 514 NPAN-----DLQAMARVWRDGQKKTVYIYRLITAGTIEEKIYQRQISKQSLSGAVVDA 566


>gi|321476094|gb|EFX87055.1| RAD54B meiotic recombination protein [Daphnia pulex]
          Length = 1001

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 41/230 (17%)

Query: 3   QYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            Y           +        +  S  +   +L N    +   +   E           
Sbjct: 693 LYRNVLDSSAVRSILSSTQTGNDQLSFILALRKLCNHPTLFAATRKHAECSELWQENYKE 752

Query: 53  ----------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                       K      I+    K     II+  +    L    ++  +         
Sbjct: 753 DSSQIQSRDASGKFVVTFAILDSLMKNTKEKIILVSYSTKMLDLFGESCTERKYSFVRLD 812

Query: 91  -GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +     +  +N+ +    +      + G GLNL  G + L+ + + W+     Q 
Sbjct: 813 GSTPTNTRMGIVDRFNDPQGADRVFLLSSKAGGVGLNL-IGASRLILYDIDWNPANDMQA 871

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + RI      + G KR V +Y L+   TI+E + QR   K  +   +++A
Sbjct: 872 MARIW-----REGQKRTVQIYRLLTTGTIEEKIFQRQILKQGLSGAIVDA 916


>gi|198455503|ref|XP_001360023.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
 gi|198133273|gb|EAL29175.2| GA16098 [Drosophila pseudoobscura pseudoobscura]
          Length = 1662

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 +K        K+  L+ ++   KA    +++       +  L++     +     
Sbjct: 1151 AIVVPDKETLITDAGKLFVLDTLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1210

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1211 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1265

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1266 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1315


>gi|49476336|gb|AAT66509.1| KISH2 [Homo sapiens]
          Length = 2881

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2    KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 1108 KYYRAILEKNFSFLFKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 1167

Query: 52   ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 1168 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 1227

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1228 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1284

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 1285 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 1341


>gi|328863054|gb|EGG12154.1| hypothetical protein MELLADRAFT_76598 [Melampsora larici-populina
           98AG31]
          Length = 823

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 39/208 (18%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH--------------------DEKIKALEVIIEK 65
                   +L N     D  +                            K+  LE I  +
Sbjct: 537 LKMLGILRKLCNHPDLLDLHQDIPGSEKCFPEGYTSKDSRAPARPELSGKMVVLERIRTQ 596

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLF 113
                I++  +F   L  ++K   +             + K    +  +N  +    +  
Sbjct: 597 TTD-KIVLISNFTQTLDVMEKMCRERRWGCLRLDGTMQITKRQKLVDRFNNPEGKEFIFL 655

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL  G N L+ F   W+    Q       + R  + G K+  FVY  I  
Sbjct: 656 LSSKAGGCGINL-IGANRLILFDPDWNPASDQ-----QALARVWRDGQKKECFVYRFILT 709

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +++E V QR   K  +   +++  + +
Sbjct: 710 GSVEEKVFQRQSQKMKLSASVVDEQEDD 737


>gi|225560868|gb|EEH09149.1| DNA repair and recombination protein RAD54 [Ajellomyces capsulatus
           G186AR]
          Length = 1511

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
             + + W       +  +   I +     I++  ++   L   ++               
Sbjct: 482 DRDVRSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRTRQYGCLRLDGT 541

Query: 92  RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             + K    + ++N+      +      + G G+NL  G N LV F   W+    Q    
Sbjct: 542 MNVTKRQKLVDKFNDPNGEEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ---- 596

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + R  + G K+  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 597 -QALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 645


>gi|194855241|ref|XP_001968502.1| GG24469 [Drosophila erecta]
 gi|292630862|sp|B3NAN8|RAD54_DROER RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=Protein okra
 gi|190660369|gb|EDV57561.1| GG24469 [Drosophila erecta]
          Length = 784

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 73/227 (32%), Gaps = 43/227 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------ 52
            + +R L      +   +  + +      ++ +      E+   ++              
Sbjct: 432 DQVRRSLA---DCKEKASLTALADITTLKKICSHPNLIYEKITARDKGFENSQNVLPSNY 488

Query: 53  ---------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQ 90
                      K   L+ ++          +++  ++   L   ++              
Sbjct: 489 NAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDG 548

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIE 149
             ++ K    +  +N+ +        +S   G  L   G N L  F   W+        +
Sbjct: 549 TMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----D 603

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + R  + G K+  ++Y L+A  +I+E +LQR   K ++   +++
Sbjct: 604 EQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 650


>gi|268557732|ref|XP_002636856.1| C. briggsae CBR-LET-418 protein [Caenorhabditis briggsae]
          Length = 1849

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  ++  +  N    +               E  
Sbjct: 857  KWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKASLEAPKEKNGMYEGT 916

Query: 48   WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                +  K   L+ ++ K       +++       +  L+          +         
Sbjct: 917  ALIKNSGKFVLLQKMLRKLKDTGHRVLIFSQMTMMMDILEDFCDVEGYKYERIDGSITGQ 976

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 977  MRQDAIDRYNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1030

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G K  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1031 SRAHRLGQKHKVMIYRFVTKNSVEERITTVAKKKMLLNHLVVRA 1074


>gi|311261060|ref|XP_001928941.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8 [Sus scrofa]
 gi|311261079|ref|XP_001929167.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8 [Sus scrofa]
          Length = 2583

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1118

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|297694660|ref|XP_002824590.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like isoform 1
            [Pongo abelii]
          Length = 2581

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1118

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|295664715|ref|XP_002792909.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
 gi|226278430|gb|EEH33996.1| SNF2 family N-terminal domain containing protein [Paracoccidioides
           brasiliensis Pb01]
          Length = 682

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 384 LKAIGILKKLCNHPDLLNLGADLPGCEQFFPEDYIPIESRGRDRDVRSWYSGKMMVLDRM 443

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+ + 
Sbjct: 444 LARIRQDTNDKIVLISNYTQTLDLFERLCRSRQYGCLRLDGSMNVTKRQKLVDKFNDPEG 503

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 504 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 557

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 558 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 589


>gi|156845511|ref|XP_001645646.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116312|gb|EDO17788.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 941

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 55/243 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------ 43
           K Y + +++                       +L N     D                  
Sbjct: 631 KSYIELRKD---------DSFEKPLKAIGVLKKLCNHPDLLDLESELPEMGDSVSIPDGY 681

Query: 44  ------EEKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ---- 90
                 + K  +     K   LE  + K N      I++  ++   L  +++   +    
Sbjct: 682 VISKNGKSKDVQPQFSGKFAILERFLHKINTESDDKIVLISNYTQTLDLVERLCRRKQYG 741

Query: 91  ------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   T++K    +  +N       +      + G G+NL  G N L+     W+  
Sbjct: 742 SVRLDGSMTINKRQKLVDRFNSPDSHEFIFLLSSKAGGCGINL-IGANRLILLDPDWNPA 800

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             Q       + R  + G K+  F+Y  IA  TI+E V QR   K ++   +++A K++ 
Sbjct: 801 ADQ-----QALARVWRDGQKKDCFIYRFIATGTIEEKVYQRQSMKMSLSSCVVDA-KEDV 854

Query: 203 IHV 205
             +
Sbjct: 855 DRL 857


>gi|51593084|ref|NP_035546.2| probable global transcription activator SNF2L2 isoform 1 [Mus
            musculus]
          Length = 1583

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 988  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1047

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1048 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1107

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1108 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1163

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1164 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|195426563|ref|XP_002061395.1| GK20897 [Drosophila willistoni]
 gi|194157480|gb|EDW72381.1| GK20897 [Drosophila willistoni]
          Length = 3304

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
             DL    I A  +     + +Q   G +   +      +   K+    V+I       + 
Sbjct: 1710 LDLLHPIISAMTTQFPDPRLIQYDCGKLQTLDR----LLRQLKVDGHRVLIFTQMTKMLD 1765

Query: 73   VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
            V   F +    +         +++    ++ +N + +I        S G G+NL  G + 
Sbjct: 1766 VLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADT 1824

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + 
Sbjct: 1825 VIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKANQKRMLS 1879

Query: 192  DLLLNA 197
            D+ +  
Sbjct: 1880 DMAIEG 1885


>gi|168053884|ref|XP_001779364.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162669280|gb|EDQ55871.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 719

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +      ++   + S L  L+                  + +    + E+N +  I +  
Sbjct: 554 QQGGHRTLIFSQWTSMLDILEWALDVMGFSYTRLDGSTQVSERQTLVDEFNNDPSIFVFL 613

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL  G + ++   L ++ +     ++R    R  + G  + V +Y L+ +
Sbjct: 614 LSTRAGGQGLNLT-GADTVILHDLDFNPQ-----MDRQAEDRCHRIGQSKPVTIYRLVTK 667

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
           +T+DE + +  + K  +   +L  
Sbjct: 668 DTVDESIYKIAQQKLVLDAAVLEG 691


>gi|169600905|ref|XP_001793875.1| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
 gi|160705541|gb|EAT90036.2| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]
          Length = 831

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 511 LKVIGMLKKLCNHPDLLELPQDLPGCEHTLPEDFVPKDARGRDREVKVWYSGKMLVLDRM 570

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L                      + K    + ++N+ + 
Sbjct: 571 LARIRAETNDKIVLISNYTQTLDIFAALCRSRGYGCLRLDGTMNVSKRQKLVDKFNDPEG 630

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           P  +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 631 PEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 684

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  I   TI+E V QR   K ++   ++++ +
Sbjct: 685 YRFITTGTIEEKVFQRQSHKQSLSSCVVDSAE 716


>gi|328865915|gb|EGG14301.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1343

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAF 88
            +  +K   +    K++ L  ++ +        ++       L                 
Sbjct: 226 LFFPDKRLVQYDCGKLQKLAELLRELKKGGHRALIFTQMTKMLDVFEGFLNLHGYTYVRL 285

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +++     + +N + +I L      S G GLNL  G + ++F+   W+       
Sbjct: 286 DGSTKVERRQLLTERFNKDNRIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPS----- 339

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++     R  + G  R V +Y LI Q+TI+E +L++   K  + D+++   +
Sbjct: 340 MDAQAQDRCHRIGQTREVHIYRLITQHTIEENILKKSNQKRQLDDMVIQGGE 391


>gi|326923617|ref|XP_003208031.1| PREDICTED: lymphoid-specific helicase-like [Meleagris gallopavo]
          Length = 871

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 596 MMLLRKCCNHPYLIEYPLDPATQQFKVDEDLVKNSGKFLLLDRMLPELKKRGHKVLMFSQ 655

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               L  L                     D++    Q  N+ ++ L      + G G+NL
Sbjct: 656 MTMMLDILMDYCYLRSFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRAGGLGINL 715

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 716 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 769

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 770 AKRKLEKLIIH 780


>gi|313237190|emb|CBY12409.1| unnamed protein product [Oikopleura dioica]
          Length = 1294

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 25/210 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
           +K Y+ F      D++   +   +   +     ++ +                       
Sbjct: 383 LKIYNDFLSS--EDVRNALMTRASPLVQCTVLKKICDHPRRMANNAIKDIDLDLLLSESG 440

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
           K++ L  +++      I++       L               +   + +   +D    + 
Sbjct: 441 KMQVLADLVDAIIPEKILIFSQSIKILDIIAKILDDKTVNFIRMDGKDKLPIRDEKVKRF 500

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++ +I +          GL L      ++ +   W+        +   V R  + G  R
Sbjct: 501 QSDKRIKVFMLTTGVGAVGLTLTA-ATRVIVYDPDWNPGR-----DDQAVDRAYRIGQTR 554

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V V+ LI   TI+E +  R   K +I   
Sbjct: 555 PVVVFRLITCETIEEKIYSRQLFKKSIISQ 584


>gi|297301486|ref|XP_002805795.1| PREDICTED: TATA-binding protein-associated factor 172-like [Macaca
            mulatta]
          Length = 1811

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1491 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1550

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1551 QHPEFKTTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 1610

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1611 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1670

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1671 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1724

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1725 KIMGLQKFKMNIANTVIS 1742


>gi|195570490|ref|XP_002103240.1| GD19063 [Drosophila simulans]
 gi|194199167|gb|EDX12743.1| GD19063 [Drosophila simulans]
          Length = 1403

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 1088 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 1147

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1148 ELTKVTSQLALTNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1207

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1208 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1266

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1267 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1321

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1322 LTANTVVSAENA 1333


>gi|195451229|ref|XP_002072824.1| GK13479 [Drosophila willistoni]
 gi|194168909|gb|EDW83810.1| GK13479 [Drosophila willistoni]
          Length = 1892

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                  K        K+  L+ ++   K+    +++       +  L++     +     
Sbjct: 1147 SIVVPNKETLITDAGKLFVLDSLLTRLKSEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1206

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1207 LDGSSKISARRDMVADFQTRSDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1261

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1262 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1311


>gi|28317220|gb|AAO39617.1| GH12153p [Drosophila melanogaster]
          Length = 1221

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 77/252 (30%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 906  LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 965

Query: 48   WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 966  ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1025

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +++                      +    +  +N +  I +L       G GLNL  G
Sbjct: 1026 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 1084

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1085 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1139

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1140 LTANTVVSAENA 1151


>gi|146414908|ref|XP_001483424.1| hypothetical protein PGUG_04153 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 990

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYDEEK--------H 47
             QR  Y  +  ++I+A N A+K           ++  +  N    ++  +         
Sbjct: 373 DMQRSWYQKILEKDIDAVNGANKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPFTTDE 432

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
               + EK+K L+ ++   ++  + +++    +  L                        
Sbjct: 433 HLVYNAEKMKILDQLLKKFQSEGSRVLIFSQMSRMLDILEDYCAFREFQYCRIDGQTDHA 492

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 493 DRVNAIDEYNKPGSEKFVFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAM 546

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +N I+E VL+R   K  +  L++   +
Sbjct: 547 DRAHRIGQTKQVKVFRFITENAIEEKVLERAAQKLRLDQLVIQQGR 592


>gi|126273285|ref|XP_001375597.1| PREDICTED: similar to high-mobility group protein 2-like 1,
            [Monodelphis domestica]
          Length = 1878

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 75/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E +                  +         +L N        
Sbjct: 1557 VQLYEDFAKSRAKCDVDETVSTAALAEETEKPKLKATGHVFQALQYLRKLCNHPALVLTT 1616

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1617 QHPEFKNTTEQLAAQNSSLRDIQHAPKLSALKQLLLDCGLGNTSTSESGTEAVVAQHRIL 1676

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1677 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHV 1736

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1737 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1790

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1791 KIMGLQKFKMNIANTVIS 1808


>gi|195124269|ref|XP_002006616.1| GI18484 [Drosophila mojavensis]
 gi|193911684|gb|EDW10551.1| GI18484 [Drosophila mojavensis]
          Length = 603

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 36/221 (16%)

Query: 6   KFQRELYCDLQ---------GENIEAFNSASKTVKCLQLANGAVYYDEEKH-------WK 49
           + QRE Y  L             I      +  ++  +  N    ++  +          
Sbjct: 281 RMQREWYRKLLLNDIDVMTCYGTISKMRVMNIIMQLRKCVNHPYLFEGVEELPYTTDSNL 340

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKD 97
             +  K+  L+ ++   +   + +++       L  L+      +            +  
Sbjct: 341 LKNSGKMLILDKLLMKLQEQGSRVLIFSQMTRMLDILEDYCNWRKFDYCRLDGQTPHEDR 400

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I+E+N    P  +      + G G+NL    ++++ +   W+ +     ++   + R
Sbjct: 401 DKLIREYNMENSPKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMDR 454

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V V+ LIA+ T+DE +L+    K  +   ++ 
Sbjct: 455 AHRIGQKKQVRVFRLIAEKTVDEKILEHANIKLRLDRKVIQ 495


>gi|158300661|ref|XP_320523.4| AGAP012009-PA [Anopheles gambiae str. PEST]
 gi|157013268|gb|EAA00692.4| AGAP012009-PA [Anopheles gambiae str. PEST]
          Length = 2037

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       Y  L       A +  +  +   +  N    +       ++         
Sbjct: 1029 KYYKYILTRNYEALNPKGGGGACSLINIMMDLKKCCNHPYLFAAAAEEAQLGPGGNYELQ 1088

Query: 53   -----DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                   K+  LE ++   K+    +++       L              +    G T  
Sbjct: 1089 SLTKAAGKLVLLEKMLRLLKSQGHRVLIFSQMTKMLDILEDFLEGLGYKYERIDGGITGS 1148

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P         + G G+NL    + ++ +   W+        +    
Sbjct: 1149 IRQEAIDRFNAPGAPQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1202

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1203 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1244


>gi|73986616|ref|XP_867769.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 12
            [Canis familiaris]
          Length = 1600

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 28/217 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH--DE 54
             Y   Q +      G   +           +  ++  ++ N    +   +   +++    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEVRLDLYRASG 1066

Query: 55   KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
            K + L+ I+ K  A    +++     S +  ++  F                +     ++
Sbjct: 1067 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1126

Query: 103  EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  + G
Sbjct: 1127 TFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIG 1180

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1181 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1217


>gi|73998068|ref|XP_543938.2| PREDICTED: similar to helicase, lymphoid-specific isoform 1 [Canis
           familiaris]
          Length = 837

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 623 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|168054197|ref|XP_001779519.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162669101|gb|EDQ55695.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 631

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
               +   K +AL  ++ +   N    ++   + + L  L+                  +
Sbjct: 443 DHHVLASAKCQALVKLLPQLKKNGHRPLIFSQWTNMLDILEWALAVIGLRFTRLDGSTPV 502

Query: 95  DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    + E+N    I +      + G GLNL  G + ++   + ++ +     ++R   
Sbjct: 503 TERQNLVDEYNNNPDIFVFLLSTRAGGQGLNLT-GADTVIIHDVDFNPQ-----MDRQAE 556

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V VY L+   T+DE + +  + K  +   +L +
Sbjct: 557 DRCHRIGQSKPVTVYRLVTNGTVDESIFRIAQQKLVLDAAVLES 600


>gi|19173110|ref|NP_597661.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
 gi|19168777|emb|CAD26296.1| similarity to HELICASE MOT1 [Encephalitozoon cuniculi GB-M1]
          Length = 1256

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 30/222 (13%)

Query: 2    KQYHKFQ----RELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y +      +E     +L+   ++  N   K  + L LA   + + ++         K
Sbjct: 1028 KLYREIDEKGGKESLGDAELEYGKVDQKNVGFKRTRDLFLAVSHIGHFKDSTEV---SCK 1084

Query: 56   IKALEVIIE----KANAAPIIVAYHFNS--DLARLQKAFPQGRTLDK---------DPCT 100
            +KALE II     +   + I++ + F S  DL              +             
Sbjct: 1085 VKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKKYKFKYSRLDGSVPSAARTKI 1144

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +E+N G   +LF      G GLNL  G + +V +   W+        +   + R  + G
Sbjct: 1145 AEEFNTGTTQMLFLTTQVGGLGLNLT-GADTVVMYEHDWNP-----FNDLQAMDRAHRIG 1198

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             KR V V+  IA+NT++E V+     K  + + L++    + 
Sbjct: 1199 QKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVSQQNADI 1240


>gi|71276170|ref|ZP_00652450.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71898329|ref|ZP_00680502.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|170730598|ref|YP_001776031.1| hypothetical protein Xfasm12_1485 [Xylella fastidiosa M12]
 gi|71163088|gb|EAO12810.1| SNF2-related [Xylella fastidiosa Dixon]
 gi|71731852|gb|EAO33910.1| SNF2-related [Xylella fastidiosa Ann-1]
 gi|167965391|gb|ACA12401.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 470

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 83/140 (59%), Positives = 109/140 (77%), Gaps = 2/140 (1%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
           + Y   +++++  L+ G  +EAFN+ SKT+KCLQLANGA+Y D+ +  W+ VHD K++AL
Sbjct: 257 RLYKAMEQDMFIALECGTEVEAFNATSKTIKCLQLANGALYTDDTRQAWEVVHDAKLEAL 316

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             IIE+A   P++VAYHF SD+ARLQ+AFP+GR LDK+P TI++WN G IP+LFAHPAS 
Sbjct: 317 HDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRALDKNPDTIRDWNAGNIPVLFAHPASA 376

Query: 120 GHGLNLQYGGNILVFFSLWW 139
           GHGLNLQ GGNIL FF  WW
Sbjct: 377 GHGLNLQDGGNILAFFGHWW 396


>gi|328868808|gb|EGG17186.1| chromo domain-containing protein [Dictyostelium fasciculatum]
          Length = 1716

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 76/220 (34%), Gaps = 29/220 (13%)

Query: 2    KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------- 53
            K Y    ++ + +L      E  +  +  V+  +  N    ++  ++             
Sbjct: 848  KYYRLILKKNFQELNKGVKGEKTSLLNIVVELKKTCNHPYLFESAENENYNDSLDALIKG 907

Query: 54   ---EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
                 +    +I  K     +++       L  L +                + +K    
Sbjct: 908  SGKLILLDKLLIRLKETGHRVLIFSQMVRMLDILARYLKHRGFLFQRLDGSMSREKRSQA 967

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N    P         + G G+NL    + +V F   ++ +      +     R  +
Sbjct: 968  MDRFNAEGSPDFCFLLSTRAGGLGINL-STADTVVIFDSDYNPQN-----DLQAEARAHR 1021

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K AV +Y L+ + T++E +L+R + K  +  L++ ++
Sbjct: 1022 IGQKNAVNIYRLVTKKTVEEDILERAKQKMVLDHLVIQSM 1061


>gi|301784895|ref|XP_002927862.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like
            [Ailuropoda melanoleuca]
          Length = 2583

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1118

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|282165704|ref|NP_001164100.1| chromodomain-helicase-DNA-binding protein 8 isoform 1 [Homo sapiens]
 gi|317373586|sp|Q9HCK8|CHD8_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8;
            AltName: Full=Helicase with SNF2 domain 1
          Length = 2581

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1118

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|195154762|ref|XP_002018288.1| GL16841 [Drosophila persimilis]
 gi|194114084|gb|EDW36127.1| GL16841 [Drosophila persimilis]
          Length = 2139

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            DL    I A  +     + +Q   G +   +      +   K+    V+I       + 
Sbjct: 568 LDLLHPIISAMTTQFPDPRLIQYDCGKLQTLDR----LLRQLKVDGHRVLIFTQMTKMLD 623

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
           V   F +    +         +++    ++ +N + +I        S G G+NL  G + 
Sbjct: 624 VLEAFLNHHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADT 682

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + 
Sbjct: 683 VIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKANQKRMLS 737

Query: 192 DLLLNA 197
           D+ +  
Sbjct: 738 DMAIEG 743


>gi|119479095|ref|XP_001259576.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Neosartorya fischeri NRRL 181]
 gi|119407730|gb|EAW17679.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Neosartorya fischeri NRRL 181]
          Length = 967

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
            ++  +       +        E          K   L+ +++        +IV  +F+ 
Sbjct: 461 LMELRKCCIHPYLFADAIPSPYELGEHLINQSGKFLVLKKLLQHYVTTETKVIVFSNFDQ 520

Query: 80  DLARLQKAFPQGRTLDK---------------DPCTIQ-EWNEGKIPLLFAHPASCGHGL 123
            L   +      +  ++                   +    N+ +  +      + G GL
Sbjct: 521 CLNLCEDLVMMLQGSNRVFEYARLDGRTTGPWRKVMVHLFQNDPRYKVFLISIRAGGEGL 580

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +++VF    W+ +     + R    R  + G  R V +Y L +  T++E + +R
Sbjct: 581 NLTS-SSVVVFLDEDWNPQ-----VMRQAEARVHRIGQTRPVVIYKLRSTGTVEEQMSRR 634

Query: 184 LRTKSTIQDLLLN 196
           L  K+ I D +  
Sbjct: 635 LVKKAYIADRVTE 647


>gi|296207850|ref|XP_002750833.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Callithrix jacchus]
          Length = 746

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------------- 45
           + Y +F R+    +   E   + +S S      +L N      ++               
Sbjct: 421 ELYKRFLRQAKPAEELHEGKMSVSSLSSITSLKKLCNHPALIHDKCVEGEDGFEGALDLF 480

Query: 46  ------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                 K  +     K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 481 PPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKLCRARRYLYV 540

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 541 RLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 598

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 599 ----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 647


>gi|303271827|ref|XP_003055275.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463249|gb|EEH60527.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 571

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 39/201 (19%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEVIIE--KANAAPIIVAYH 76
           S  ++  +  N    +      ++            K+  L+ I+   K     +++   
Sbjct: 349 SLLMQLRKCCNHPFLFAGTDVPEDGVPIEELVEASGKLAVLDRILRRLKDAGHRVVLFSQ 408

Query: 77  FNSDLAR---------------------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL--F 113
           F S L                                   +    I  +N    P+    
Sbjct: 409 FTSMLDILSDFLTLRGYQARSIHWFPYDRYARLDGSTNRVQRSVDIAAFNRPNSPMFAFL 468

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NLQ   +  + F   W+ +     ++   + R  + G K+ V VY LI  
Sbjct: 469 LSTRAGGLGVNLQT-ADTCILFDSDWNPQ-----VDTQAMARVHRIGQKKPVHVYRLITA 522

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           ++++E + QR   K  ++ ++
Sbjct: 523 DSVEERMQQRAEKKLFLEQMV 543


>gi|242023690|ref|XP_002432264.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
            humanus corporis]
 gi|212517673|gb|EEB19526.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
            humanus corporis]
          Length = 1999

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L      +  +  +  +   +  N    +        +         
Sbjct: 959  KYYKWILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFSAAAEEAPLSANGTYELQ 1018

Query: 53   -----DEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+   +  + + +     +++       L  L+          +         
Sbjct: 1019 GLIKASGKLILLSKMLKLLREQGHRVLIFSQMTKMLDLLEDYLEGEGYKYERIDGSITGN 1078

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P         + G G+NL    + ++ +   W+        +    
Sbjct: 1079 LRQEAIDRFNAPGAPQFAFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1132

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1133 SRAHRIGQSNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1174


>gi|169606908|ref|XP_001796874.1| hypothetical protein SNOG_06505 [Phaeosphaeria nodorum SN15]
 gi|160707107|gb|EAT86336.2| hypothetical protein SNOG_06505 [Phaeosphaeria nodorum SN15]
          Length = 1108

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 39/229 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q + Y  +  ++I+A N             +  ++  +  N    +            
Sbjct: 430 DMQVDWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 489

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTL 94
                +  K+  L+ ++   KA  + +++    +                          
Sbjct: 490 EHLVNNAAKMVMLDRLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGSTAH 549

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I ++N+      L      + G G+NL    +I+V F   W+ +      +   
Sbjct: 550 EDRIAAIDDYNKPDSEKFLFLLTTRAGGLGINLTT-ADIVVLFDSDWNPQA-----DLQA 603

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + R  + G  + V+V+  + +  I+E VL+R   K  +  L++   + +
Sbjct: 604 MDRAHRIGQTKQVYVFRFVTEGAIEEKVLERAAQKLRLDQLVIQQGRSQ 652


>gi|73946679|ref|XP_860926.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 36 [Canis familiaris]
          Length = 1596

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1001 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1060

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1061 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1120

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1121 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1176

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1177 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1225


>gi|67538714|ref|XP_663131.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
 gi|40743497|gb|EAA62687.1| hypothetical protein AN5527.2 [Aspergillus nidulans FGSC A4]
          Length = 1776

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 535 LKAIGILKKLCNHPDLLNLSTDLPGCEHAFPDDYVPVEARGRDRDVRPWYSGKMMVLDRM 594

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 + K    + ++N+   
Sbjct: 595 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDPDG 654

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 655 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 708

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 709 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 740


>gi|322697909|gb|EFY89684.1| putative helicase-DNA-binding protein [Metarhizium acridum CQMa 102]
          Length = 1508

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 73/215 (33%), Gaps = 33/215 (15%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVI 62
             +  +   + N  +  ++  +       Y E    K                K+  LE +
Sbjct: 949  KMNKKERGSLN--NILMQLRKCLCHPFMYSEAIEEKHDDPVVIHRNLVEASAKLLLLEQM 1006

Query: 63   IEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG--K 108
            + K       +++   F   L  ++          +              I  +NE    
Sbjct: 1007 LPKLKERGHRVLIFSQFLQQLDIIEDFLIGIGYQYRRLDGNLSSLEKQRRIDAYNEPGSA 1066

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I        + G G+NL    + ++     ++  +     +   ++R  + G K+ V  +
Sbjct: 1067 IFAFLLSTRAGGVGINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQKQKVLCF 1120

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             L+ ++T++E ++Q  + K  +   L+ +L  + I
Sbjct: 1121 QLMTKDTVEERIMQIGKKKMALDHALIESLDDDEI 1155


>gi|297835980|ref|XP_002885872.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331712|gb|EFH62131.1| hypothetical protein ARALYDRAFT_480306 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1721

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 870  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLD 929

Query: 51   ---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
               +   K+  L+ ++ +       +++       L  L +         +         
Sbjct: 930  KIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAE 989

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + +V F   W+ +      +   +
Sbjct: 990  LRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQN-----DLQAM 1043

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1044 SRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1092


>gi|4733988|gb|AAD28668.1| putative chromodomain-helicase-DNA-binding protein [Arabidopsis
            thaliana]
          Length = 1738

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 887  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLD 946

Query: 51   ---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
               +   K+  L+ ++ +       +++       L  L +         +         
Sbjct: 947  KIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAE 1006

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + +V F   W+ +      +   +
Sbjct: 1007 LRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQN-----DLQAM 1060

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1061 SRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1109


>gi|260834097|ref|XP_002612048.1| hypothetical protein BRAFLDRAFT_127252 [Branchiostoma floridae]
 gi|229297421|gb|EEN68057.1| hypothetical protein BRAFLDRAFT_127252 [Branchiostoma floridae]
          Length = 3715

 Score = 96.0 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 23/198 (11%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            ++ YH+ +R +                   + +Q   G +   +    K +   K     
Sbjct: 2351 LRCYHRVERGMLTQFPDP------------RLVQYDCGKLQRLD----KLLRQLKQGQHR 2394

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
            V+I       + V   F +    +         +++    ++ +N + +I +      S 
Sbjct: 2395 VLIFTQMTRMLDVLERFLNYHGHVYLRLDGTTRIEQRQALMERFNADYRIFVFILSTRSG 2454

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ T++E 
Sbjct: 2455 GIGVNLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVNIYRLVSERTVEEN 2508

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +L++   K  + D+ +  
Sbjct: 2509 ILKKANQKRLLVDVSIEG 2526


>gi|326434418|gb|EGD79988.1| BRG1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1726

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 62/171 (36%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------- 90
              +            K++AL+ ++   K     +++       +  L+            
Sbjct: 1393 RCFHPSMDDLVRDCGKLQALDRLLSRLKKEGHRVLIYSQMTRMIDILEDFMTYRKYKYMR 1452

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  D+        +   I        + G G+NL    + ++F+   W+      
Sbjct: 1453 LDGSCKISDRRDMVADFQSRDDIFAFILSTRAGGIGINLTA-ADTVIFYDSDWNPT---- 1507

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  R V VY LI + T++E +L R + KS +  L++  
Sbjct: 1508 -VDQQAMDRAHRLGQTRPVTVYRLITKGTVEERILHRAQEKSKVHQLVIQG 1557


>gi|321256964|ref|XP_003193422.1| helicase [Cryptococcus gattii WM276]
 gi|317459892|gb|ADV21635.1| Helicase, putative [Cryptococcus gattii WM276]
          Length = 1238

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K++ L  ++   K+    +++       L  L+                        
Sbjct: 929  DCGKLQKLFEMLRNLKSEGHRVLIFTQMTRVLDILEMFLSYNGHRYLRLDGSTKIEDRQV 988

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              + +N + +I +  A   S G G+NL  G + + F+   W+       ++R  + R  +
Sbjct: 989  LTERFNSDPRIFVFIASSRSGGVGINLT-GADTVFFYDSDWNPS-----MDRQCMDRAHR 1042

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V +Y  ++ +T++E +L++   K  +  +++  
Sbjct: 1043 IGQTREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQE 1081


>gi|307192391|gb|EFN75626.1| Putative DNA helicase Ino80 [Harpegnathos saltator]
          Length = 1449

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
             K+  L+ ++   K     +++       +  L++                +  D+    
Sbjct: 954  GKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGSSKISDRRDMV 1013

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                    I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1014 ADFQKRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1067

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1068 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1104


>gi|294925769|ref|XP_002779000.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239887846|gb|EER10795.1| Chromodomain helicase-DNA-binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 1042

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 4   YHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYY-----DEEKHWKEVH----- 52
           Y          L G       +  +  V+  +  N           E    +        
Sbjct: 532 YRAIFERNKTYLSGAQKSGGPSLINLEVQLRKCCNHPFTIDGVEERELAMCQNKDQEFNR 591

Query: 53  ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K +     +++   F S L  +Q+         +          
Sbjct: 592 MIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVERLDGSATAKA 651

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N  +    L      + G G+NL    ++++ F   W+ +     ++     
Sbjct: 652 REEAIDRFNTPESSAFLFLLSTRAGGIGINLTA-ADVVIIFDSDWNPQ-----MDIQATA 705

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 706 RAHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 747


>gi|73951133|ref|XP_859090.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 5 [Canis familiaris]
          Length = 1822

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 28/219 (12%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------D 53
           KQY+K    R      +G         +  ++  +  N        +             
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENDSFKGRLKYGS 785

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  L+ ++ +       +++       L  L +         +              +
Sbjct: 786 GKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQAL 845

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N              + G G+NL    + +V F   W+ +      +     R  + 
Sbjct: 846 DHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARAHRI 899

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 938


>gi|126649341|ref|XP_001388342.1| SNF2 helicase [Cryptosporidium parvum Iowa II]
 gi|32398963|emb|CAD98428.1| SNF2 helicase, possible [Cryptosporidium parvum]
 gi|126117436|gb|EAZ51536.1| SNF2 helicase, putative [Cryptosporidium parvum Iowa II]
          Length = 1102

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           + Y     +    LQ +         +  ++  +  N    +D                +
Sbjct: 435 RLYKDLLSKNVDALQEKEGGGKLRLINLAMQLRKACNHPYLFDGYEDKSVDPFGEHVVEN 494

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCT 100
             K+  ++ +I+K  +  + I++             +               + D     
Sbjct: 495 SGKMVLMDRLIKKLVSGGSRILIFSQMARVLDILEDYCHMRGFPYCRIDGNTSGDDRDRQ 554

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N+      +      + G G+NL    +I++ +   W+ +      +   + R  +
Sbjct: 555 ISEFNKPNSEKLVFLLSTRAGGLGINL-ATADIVILYDSDWNPQA-----DLQAMDRAHR 608

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K+ VFV+ L  ++TI+E +++R   K  +   ++   +
Sbjct: 609 IGQKKPVFVFRLCHEHTIEEKIIERANLKLQLDFAIIQQGR 649


>gi|115944263|ref|XP_001189861.1| PREDICTED: similar to LD32234p, partial [Strongylocentrotus
           purpuratus]
          Length = 2083

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEK--AN 67
           +        N+ S  +K        +         E+        K++ ++ ++ K    
Sbjct: 713 VLNSERTLINTLSSELKPKSWCLHPIENLMRLDMPELRLIQYDCGKLQTMDGLLRKLKTE 772

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHP 116
            + +++       L  L++       +           +    ++ +N + +I       
Sbjct: 773 GSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMMERFNKDPRIFCFILST 832

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G G+NL  G N ++F+   W+       ++     R  + G  R V +Y LI++ +I
Sbjct: 833 RSGGMGVNLT-GANAVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISEMSI 886

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L++   K  + D+ +  
Sbjct: 887 EENILKKSNQKRLLIDVSIEG 907


>gi|115678452|ref|XP_788939.2| PREDICTED: similar to LD32234p, partial [Strongylocentrotus
           purpuratus]
          Length = 2021

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEK--AN 67
           +        N+ S  +K        +         E+        K++ ++ ++ K    
Sbjct: 651 VLNSERTLINTLSSELKPKSWCLHPIENLMRLDMPELRLIQYDCGKLQTMDGLLRKLKTE 710

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHP 116
            + +++       L  L++       +           +    ++ +N + +I       
Sbjct: 711 GSRVLIFTQMTKMLDILERFLNFHGHIYLRLDGTTKVEQRQIMMERFNKDPRIFCFILST 770

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G G+NL  G N ++F+   W+       ++     R  + G  R V +Y LI++ +I
Sbjct: 771 RSGGMGVNLT-GANAVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISEMSI 824

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +L++   K  + D+ +  
Sbjct: 825 EENILKKSNQKRLLIDVSIEG 845


>gi|114631899|ref|XP_001151339.1| PREDICTED: helicase, lymphoid-specific isoform 11 [Pan troglodytes]
          Length = 824

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 511 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 570

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 571 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 630

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 631 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 684

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 685 AKRKLEKLIIH 695


>gi|7243213|dbj|BAA92654.1| KIAA1416 protein [Homo sapiens]
          Length = 1967

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 42/236 (17%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKH-----WKEVHDE 54
           K Y     + +  L   G      N  +  ++  +  N     +  +      +KE H+ 
Sbjct: 454 KYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNA 513

Query: 55  ---------------KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K       +++       L  L+    Q R   + 
Sbjct: 514 ESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 573

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 574 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 630

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     R  + G  ++V +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 631 ---DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 683


>gi|257095431|ref|YP_003169072.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047955|gb|ACV37143.1| Non-specific serine/threonine protein kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 842

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 20/201 (9%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            L  ++    + A + ++     N +   D +       DE I  L+ I      A ++V
Sbjct: 495 FLSEKDQLRLHCALQNMRMS--CNSSFLLDHQTDDGFKADELIALLDDI-FSDPQAKVVV 551

Query: 74  AYHF--NSDL--------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              +    +L              F  G   DK    +  +N +    +      + G G
Sbjct: 552 FSQWLRTHELIIRRLAGRDWQHVLFHGGVPGDKRGALVDRFNNDPACRVFL-STDAGGVG 610

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+   ++V   L W+    +Q I R+      + G  R V V   +A+ TI+E +L 
Sbjct: 611 LNLQHAAAVVVNMDLPWNPAVLEQRIGRV-----HRLGQTRGVQVINFVARGTIEEGMLS 665

Query: 183 RLRTKSTIQDLLLNALKKETI 203
            L  K ++   +L+    + +
Sbjct: 666 VLAFKQSLFAGVLDGGDSDIV 686


>gi|256080936|ref|XP_002576731.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
 gi|242318369|emb|CAZ32968.2| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
          Length = 832

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 85/249 (34%), Gaps = 56/249 (22%)

Query: 2   KQYHKFQREL---------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--KHWKE 50
           + Y  F + +           D    +  + +S +      +L N      E+   +   
Sbjct: 496 EVYSDFVKRMAREVSLKMNIADGLRNDKLSISSLASITHLKKLCNHPDLVYEKMTANTDG 555

Query: 51  VHDEK---------------------------IKALEVIIEKANAAPIIVAYHFNSDLAR 83
            H+                             +  L  +I+   +  +++  ++   L  
Sbjct: 556 FHNALSYFPANYQGSLESNASVKPELSGKFQVLDCLLAVIKSTTSDKVVLISNYTQTLDL 615

Query: 84  LQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
            ++   Q            T+ K    ++++N+      +      + G GLNL  G N 
Sbjct: 616 FERLCLQRGYNFVRLDGTMTIKKRAKVVEQFNDPTSRDFVFMLSSKAGGCGLNL-IGANR 674

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV F   W+        +   + R  + G K+  ++Y LI+  TI+E +LQR   K  + 
Sbjct: 675 LVMFDPDWNPAN-----DDQAMARVWRDGQKKQCYIYRLISTGTIEEKMLQRQAHKKALS 729

Query: 192 DLLLNALKK 200
             +++  ++
Sbjct: 730 SCVVDQQEE 738


>gi|326435418|gb|EGD80988.1| hypothetical protein PTSG_01570 [Salpingoeca sp. ATCC 50818]
          Length = 1332

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 20/150 (13%)

Query: 52   HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            H  K+  + + + +      +                      ++    I  +N G + +
Sbjct: 953  HSLKLLDIMMDVFRGRGVSYLR--------------MDGNMPTEERQEAINRFNAGTVDV 998

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  +   G+ L    N +V F   W+        +R    R  + G  + V V  LI
Sbjct: 999  FLLSTKTANTGITLTR-ANKIVIFDPSWNPA-----EDRQAEHRAWRIGQNQDVEVVRLI 1052

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +  TI+EL+  R   K  +  + L    + 
Sbjct: 1053 SSGTIEELMYARQLYKQQLAAVALEGRAQR 1082


>gi|73986614|ref|XP_867761.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 11
            [Canis familiaris]
          Length = 1602

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 72/219 (32%), Gaps = 30/219 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +    +     
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEQPPLLDLYRA 1066

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              K + L+ I+ K  A    +++     S +  ++  F                +     
Sbjct: 1067 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1126

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  +
Sbjct: 1127 LKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHR 1180

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1181 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1219


>gi|73946677|ref|XP_860893.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 35 [Canis familiaris]
          Length = 1584

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 989  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1048

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1049 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1108

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1109 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1164

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1165 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1213


>gi|55771379|dbj|BAD72546.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
 gi|55773904|dbj|BAD72509.1| chromatin-remodeling factor CHD3 [Oryza sativa Japonica Group]
          Length = 1354

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 29/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------VH 52
           + Y     + Y  L   +    +  +  ++  +L   A   DE +               
Sbjct: 541 EYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALRRLLES 600

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
             K++ L+ ++ K       +++   F   L              +         +    
Sbjct: 601 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 660

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+        +   + R  +
Sbjct: 661 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHR 714

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K
Sbjct: 715 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTK 756


>gi|67466735|ref|XP_649509.1| helicase  [Entamoeba histolytica HM-1:IMSS]
 gi|56465969|gb|EAL44123.1| helicase domain-containing protein [Entamoeba histolytica
           HM-1:IMSS]
          Length = 759

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKH----WKEVHDEKIKALEVII--EKANAAPIIVAYHFNS 79
            +      ++ N     ++ +            K+K +  ++   K      ++      
Sbjct: 393 LAAIDTLRKICNHPHLINKTEDLTPETIYKESSKLKYVCDLLKQFKKEGHKALIFCQTRQ 452

Query: 80  DLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
            L  +++                + +K P  I ++N +  + +        G G+NL  G
Sbjct: 453 MLNIIEQMMLNENFKYLRMDGLVSSNKRPEYISQFNNDPTVLVFILTTRVGGLGINLT-G 511

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+       ++     R  + G  R V +Y LI   TI+E + Q+   K 
Sbjct: 512 ADRVIMYDPDWNPT-----VDSQAKERTLRIGQDRDVIIYRLICSGTIEEHIYQKQMAKE 566

Query: 189 TIQDLLL 195
            + D +L
Sbjct: 567 ILSDKIL 573


>gi|328711442|ref|XP_001943462.2| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Acyrthosiphon pisum]
          Length = 842

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 42/229 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           + Y +        +Q   +   +  S      ++ N        ++  +           
Sbjct: 517 RLYEETVSYWENRVQEFGLSTISHFSVITMLKKVCNHPELILNNRNNSDTTEETLNQHLN 576

Query: 52  -----------HDEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                         K+  ++ ++++ +       ++  ++   L    K           
Sbjct: 577 RTITLKHSLIESSGKLIVVDNLLKELHKNGSEKTVLISYYTQTLDIFVKLCDMKHYKYLR 636

Query: 96  --------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +    ++++N       +L     + G GLNL  G + L+ +   W+    Q
Sbjct: 637 LDGSTATAQRTDIVKKFNNSNSNYSVLLLSAKAGGVGLNL-VGASNLILYDSDWNPASDQ 695

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Q + RI      + G K+ V +Y L+   TI+E + QR  +K+ + + +
Sbjct: 696 QAMARIW-----RDGQKKNVHIYRLLTSGTIEEKIFQRQISKTGLSEAI 739


>gi|238878261|gb|EEQ41899.1| DNA repair and recombination protein RAD54 [Candida albicans WO-1]
          Length = 848

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 48/226 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYD--------------------------EEKHWKEVHDE 54
                        +L N     D                            +  +     
Sbjct: 546 TGSQPLKAIGMLKKLCNHPDLLDLPEDVEGSEEFIPDDYQSSIAGGSASRNREIQTWFSG 605

Query: 55  KIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
           K   LE  ++K N      I++  ++   L  ++K                 ++K    +
Sbjct: 606 KFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLV 665

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N+   P  +      + G G+NL  G N LV     W+    Q       + R  + 
Sbjct: 666 DKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQ-----QALARVWRD 719

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G K+  F+Y  I+  TI+E + QR   K ++   +++  K++   +
Sbjct: 720 GQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE-KEDVERL 764


>gi|26353950|dbj|BAC40605.1| unnamed protein product [Mus musculus]
          Length = 594

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
           ++ Y  F +        E + +                +         +L N        
Sbjct: 274 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 333

Query: 46  KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
           +H +                   H  K+ AL+ ++                       I+
Sbjct: 334 QHPEFKSTTEKLTVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSSTESGTESVVAQHRIL 393

Query: 73  VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +     S L  ++                       +    +  +N +  I +L      
Sbjct: 394 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 453

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 454 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 507

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I + +++
Sbjct: 508 KIMGLQKFKMNIANTVIS 525


>gi|27477070|ref|NP_003963.1| TATA-binding protein-associated factor 172 [Homo sapiens]
 gi|12643543|sp|O14981|BTAF1_HUMAN RecName: Full=TATA-binding protein-associated factor 172; AltName:
            Full=ATP-dependent helicase BTAF1; AltName: Full=B-TFIID
            transcription factor-associated 170 kDa subunit; AltName:
            Full=TAF(II)170; AltName: Full=TBP-associated factor 172;
            Short=TAF-172
 gi|2920587|gb|AAC04573.1| TBP-associated factor 172 [Homo sapiens]
 gi|2995136|emb|CAA04475.1| TBP associated factor [Homo sapiens]
 gi|55959634|emb|CAI14103.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae) [Homo sapiens]
 gi|85567637|gb|AAI12202.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa [Homo sapiens]
 gi|119570487|gb|EAW50102.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae), isoform CRA_a [Homo
            sapiens]
 gi|119570488|gb|EAW50103.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
            170kDa (Mot1 homolog, S. cerevisiae), isoform CRA_a [Homo
            sapiens]
          Length = 1849

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1529 VQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1588

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1589 QHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 1648

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1709 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1762

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1763 KIMGLQKFKMNIANTVIS 1780


>gi|270010554|gb|EFA07002.1| hypothetical protein TcasGA2_TC009972 [Tribolium castaneum]
          Length = 945

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 66/205 (32%), Gaps = 33/205 (16%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYY--------------DEEKHWKEVHDEKIKALEVII 63
           EN    N         ++ N    Y               ++K        K+  +  ++
Sbjct: 468 ENQTRANVLISITALRKICNHPDIYLHAAGEEAEDDQNVCDKKFGYYKKSGKMIVVSALL 527

Query: 64  --EKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIP 110
              K     +++     + +   ++                 +      I ++N +    
Sbjct: 528 KIWKKQKHRVLLFTQSRAMITIFEEFLKQQGYTYLKMDGSTAVSSRQPLINKFNEDSSYD 587

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +        G G+NL  G + ++ +   W+        +     R  + G ++ V +Y L
Sbjct: 588 VFLLTTKVGGLGVNLT-GADRVIIYDPDWNPAT-----DTQARERAWRIGQEKQVTIYRL 641

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           ++  TI+E + QR   K  + + +L
Sbjct: 642 LSAGTIEEKMYQRQVWKQLLSNKVL 666


>gi|170070470|ref|XP_001869591.1| helicase [Culex quinquefasciatus]
 gi|167866368|gb|EDS29751.1| helicase [Culex quinquefasciatus]
          Length = 1569

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             K+  L+ ++   K     +++       +  L++     +              +    
Sbjct: 1176 GKLAVLDSLLTRLKTQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMV 1235

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                +   I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1236 ADFQSRTDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1289

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1290 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1326


>gi|42407265|dbj|BAD10849.1| lymphoid specific helicase variant6 [Homo sapiens]
 gi|119570418|gb|EAW50033.1| helicase, lymphoid-specific, isoform CRA_h [Homo sapiens]
          Length = 740

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 466 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 525

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 526 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 585

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 586 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 639

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 640 AKRKLEKLIIH 650


>gi|309361932|emb|CAP29254.2| CBR-LET-418 protein [Caenorhabditis briggsae AF16]
          Length = 1863

 Score = 95.6 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  ++  +  N    +               E  
Sbjct: 862  KWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKASLEAPKEKNGMYEGT 921

Query: 48   WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                +  K   L+ ++ K       +++       +  L+          +         
Sbjct: 922  ALIKNSGKFVLLQKMLRKLKDTGHRVLIFSQMTMMMDILEDFCDVEGYKYERIDGSITGQ 981

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 982  MRQDAIDRYNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1035

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G K  V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1036 SRAHRLGQKHKVMIYRFVTKNSVEERITTVAKKKMLLNHLVVRA 1079


>gi|281345313|gb|EFB20897.1| hypothetical protein PANDA_004205 [Ailuropoda melanoleuca]
          Length = 1845

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1525 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1584

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1585 QHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESIVAQHRIL 1644

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1645 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1704

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1705 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1758

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1759 KIMGLQKFKMNIANTVIS 1776


>gi|198430685|ref|XP_002130660.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 1867

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 75/223 (33%), Gaps = 32/223 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW----------K 49
           KQY+K    +      +G      +  +  ++  +  N A      +             
Sbjct: 747 KQYYKWLLTKNYAALTKGGRGSFTSFCNIIMELKKCCNHAFLVKAPETEATSSEMLLKVL 806

Query: 50  EVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
             +  K+  L+ ++   K N   +++       L  +Q+     R   +           
Sbjct: 807 LRNSGKMILLDKLLIRLKENGHRVLIFSQMVRMLDIIQEYLVVRRLQFQRLDGSVSSDLR 866

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N              + G G+NL    + ++ F   W+      M +     R
Sbjct: 867 RRALDHFNAEGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----MNDLQAQAR 920

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 921 AHRIGQKNQVNIYRLVCAGSVEEDIIERAKKKMVLDHLVIQRM 963


>gi|73991998|ref|XP_534421.2| PREDICTED: similar to chromodomain helicase DNA binding protein 6
           isoform 1 [Canis familiaris]
          Length = 2713

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 766

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|195121866|ref|XP_002005439.1| GI19071 [Drosophila mojavensis]
 gi|193910507|gb|EDW09374.1| GI19071 [Drosophila mojavensis]
          Length = 3199

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
              L    I A  +     + +Q   G +   +      +   K+    V+I       + 
Sbjct: 1655 LALLHPIISAMTTQFPDPRLIQYDCGKLQTLDR----LLRQLKVDGHRVLIFTQMTKMLD 1710

Query: 73   VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
            V   F +    +         +++    ++ +N + +I        S G G+NL  G + 
Sbjct: 1711 VLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGVNLT-GADT 1769

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + 
Sbjct: 1770 VIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKANQKRMLS 1824

Query: 192  DLLLNA 197
            D+ +  
Sbjct: 1825 DMAIEG 1830


>gi|168058055|ref|XP_001781026.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162667507|gb|EDQ54135.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 808

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 78/226 (34%), Gaps = 36/226 (15%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDEKIKAL 59
            ++E    +      A +  +  ++  +  +    +        +E         K+K L
Sbjct: 293 LKKESPKIIGDSPGTATSLQNIVIQLRKACSHPYLFDGIEPEPFQEGEHIVEASGKLKML 352

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----PCTIQEWNE------- 106
           +VI++K +     +++       L  LQ          +         + +N        
Sbjct: 353 DVILKKLHASGHRVLIFAQMTRTLDILQDYLEYRSYSYERLDGSVRAEERFNAVHSFSAG 412

Query: 107 ----------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                     G   +      + G GLNL  G + ++F+   W+ +      ++  + R 
Sbjct: 413 HSKCGGDAKSGSAFVFLLTTRAGGVGLNL-IGADTVIFYEQDWNPQA-----DKQALQRA 466

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + G    V    LI ++TIDE++++R + K  +   ++     + 
Sbjct: 467 HRIGQISPVLAINLITRHTIDEVIMRRAKKKLELTCNVIGRDDADL 512


>gi|145602348|ref|XP_359788.2| hypothetical protein MGG_04989 [Magnaporthe oryzae 70-15]
 gi|145010771|gb|EDJ95427.1| hypothetical protein MGG_04989 [Magnaporthe oryzae 70-15]
          Length = 1887

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 59/248 (23%)

Query: 2    KQYHKF-QRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHW-------- 48
            K +  F ++E     +     +     +         +L N      +  H         
Sbjct: 1558 KLFEDFTKKESKKITEQAGREDKEAKQHIFQALQYMRKLCNSPALVMKPGHKLYDDTQRI 1617

Query: 49   ---------KEVHDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLA 82
                       VH  K+ AL  ++                         ++       L 
Sbjct: 1618 LAKQGTSLEDPVHAPKLTALRDLLVDCGIGVEGTDSNDPLYQPIKPHRALIFCQMKEMLD 1677

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +Q                  G   +K    + ++N +    +L    +  G GLNL  G
Sbjct: 1678 MVQNTVLKKLLPSVSFLRLDGGVEANKRQDIVNKFNSDPSFDVLLLTTSVGGLGLNLT-G 1736

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ +      +   + R  + G K+ V VY LI + T++E +L   R K 
Sbjct: 1737 ADTVIFVEHDWNPQR-----DLQAMDRAHRIGQKKVVNVYRLITRATLEEKILSLQRFKI 1791

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1792 DVASTVVN 1799


>gi|114651881|ref|XP_001153522.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 3 [Pan
            troglodytes]
          Length = 2556

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1034 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1093

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1094 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1153

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1154 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1210

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1211 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1263


>gi|414117|emb|CAA51407.1| HBRM [Homo sapiens]
          Length = 1586

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 973  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1032

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1033 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1092

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1093 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1148

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1149 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1197


>gi|328773251|gb|EGF83288.1| hypothetical protein BATDEDRAFT_84829 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 825

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 70/242 (28%), Gaps = 58/242 (23%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------- 52
           Y      +  + + +     N     +K  Q  N           + +            
Sbjct: 572 YDGLLNSIKKEAKDQQ---GNILIYILKLRQACNHFSLIGSTADDEPIPDSIPTLSDLSK 628

Query: 53  -----------------------DEKIKALEVIIEKANAA----PIIVAYHFNSDLA--- 82
                                    K   +  I+ +          IV   F S L    
Sbjct: 629 FLTNLKLEPTETKLDSLESTTVSSTKCDEVVRILAENQKNSNVSKTIVFSQFTSMLNVIQ 688

Query: 83  -------RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
                   L   +  G    +   T+  +   + I ++         G+NL    N ++ 
Sbjct: 689 NALDETDILYCRYDGGMKRKEREQTLFHFKSSEKINVMLISTKCGAAGINLT-CANFVIL 747

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              WW+      M+E   + R  + G +  V V  L+ ++TI+E V+++ + K  + +  
Sbjct: 748 VDPWWNP-----MMEEQAIGRVHRIGQRNPVHVVRLVMKDTIEEKVMEKQKQKLDMIEGT 802

Query: 195 LN 196
           + 
Sbjct: 803 IG 804


>gi|119596382|gb|EAW75976.1| chromodomain helicase DNA binding protein 6, isoform CRA_c [Homo
           sapiens]
          Length = 2750

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 744 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 803

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 804 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 863

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 864 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 920

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 921 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 974


>gi|159126737|gb|EDP51853.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus fumigatus A1163]
          Length = 986

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
            ++  +       +        E          K   L+ +++        +IV  +F+ 
Sbjct: 496 LMELRKCCIHPYLFADAIPSPYELGEHLIHQSGKFLVLKKLLQYYVTTETKVIVFSNFDQ 555

Query: 80  DLARLQKAFPQGRTLDK---------------DPCTIQ-EWNEGKIPLLFAHPASCGHGL 123
            L   +      +  ++                   +    N+ +  +      + G GL
Sbjct: 556 CLNLCEDLVMMLQGSNRAFEYARLDGRTTGPWRKVMVHLFQNDPRYKVFLVSIRAGGEGL 615

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +++VF    W+ +     + R    R  + G  R V +Y L +  T++E + +R
Sbjct: 616 NLTS-SSVVVFLDEDWNPQ-----VMRQAEARVHRIGQTRPVVIYKLRSAGTVEEQMSRR 669

Query: 184 LRTKSTIQDLLLN 196
           L  K+ + D +  
Sbjct: 670 LVKKAYVADRVTE 682


>gi|291398984|ref|XP_002715711.1| PREDICTED: RAD54-like protein [Oryctolagus cuniculus]
          Length = 755

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +F R+    +   E   + +S S      +L N      ++   +E          
Sbjct: 430 ELYKRFLRQAKPAEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEGALDIF 489

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                          K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 490 PPGYNSKAIEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYV 549

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 550 RLDGTMSIKKRAKVVERFNSPTSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 607

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 608 ----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 656


>gi|194761570|ref|XP_001963002.1| GF14153 [Drosophila ananassae]
 gi|190616699|gb|EDV32223.1| GF14153 [Drosophila ananassae]
          Length = 842

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           QL N   +Y  +          K   L+ ++ K       +++   F   L  ++     
Sbjct: 629 QLCNKHELYDVKIPDPLICDSGKFGYLDELLPKLREEGHRVLLFSQFTMMLDIVEEYLRV 688

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        + +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 689 RNHGFCRLDGSTAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + ++ K
Sbjct: 748 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSSEK 802

Query: 200 KET 202
            E 
Sbjct: 803 GEV 805


>gi|114631889|ref|XP_001151071.1| PREDICTED: helicase, lymphoid-specific isoform 7 [Pan troglodytes]
          Length = 740

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 466 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 525

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 526 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 585

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 586 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 639

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 640 AKRKLEKLIIH 650


>gi|37542684|gb|AAL47211.1| chromatin-remodeling factor CHD3 [Oryza sativa]
          Length = 1360

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 29/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------VH 52
           + Y     + Y  L   +    +  +  ++  +L   A   DE +               
Sbjct: 547 EYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALRRLLES 606

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
             K++ L+ ++ K       +++   F   L              +         +    
Sbjct: 607 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 666

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+        +   + R  +
Sbjct: 667 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHR 720

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K
Sbjct: 721 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTK 762


>gi|308512703|gb|ADO33005.1| cockayne syndrome protein [Biston betularia]
          Length = 954

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 26  ASKTVKCLQLANGAVYY-----------DEEKHWKEVHDEKIKALEVII--EKANAAPII 72
                   ++ N    Y           DEEK        K+  +  ++   +      +
Sbjct: 470 LVALSTLRKICNHPDLYLYEAQEDLEAIDEEKFGHWKRSGKMTVVNSLLKIWQKQGHRAL 529

Query: 73  VAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGH 121
           +     + L  L++                 + +    I+ +N   +  +  +     G 
Sbjct: 530 IFSQSRAMLCVLEQYLQSQNFKYLKMDGSVLVSQRQSLIKTFNENAEYLVFLSTTRVGGL 589

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL  G + ++ +   W+        +     R  + G +R V VY L+   TI+E + 
Sbjct: 590 GVNLT-GADRVIVYDPDWNPAT-----DDQAKERAWRIGQERTVTVYRLLCAGTIEEKIY 643

Query: 182 QRLRTKSTIQDLLL 195
           QR   K  + + +L
Sbjct: 644 QRQIFKHFLSNKIL 657


>gi|258568006|ref|XP_002584747.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
 gi|237906193|gb|EEP80594.1| DNA repair and recombination protein RAD54 [Uncinocarpus reesii
           1704]
          Length = 1534

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 370 LKAIGILKKLCNHPDLLNLSADLPGCEQFFPDDFVPPEGRGRDRDVKSWYSGKMMVLDRM 429

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    + ++N+   
Sbjct: 430 LARIRQDTNDKIVLISNYTQTLDLFERLCRSRGYGSLRLDGTMNVKKRQKLVDKFNDPNG 489

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 490 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 543

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K  +   ++++ +
Sbjct: 544 YRFIATGSIEEKIFQRQSHKQLLSSCVVDSAE 575


>gi|114682041|ref|XP_001148020.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 2
           [Pan troglodytes]
          Length = 2693

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 687 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 746

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 747 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 806

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 807 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 863

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 864 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|73998226|ref|XP_543929.2| PREDICTED: similar to TATA-binding-protein-associated factor 172
            (TBP-associated factor 172) (TAF-172) (TAF(II)170)
            (B-TFIID transcription factor-associated 170 kDa subunit)
            [Canis familiaris]
          Length = 1849

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1529 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1588

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1589 QHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 1648

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1709 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1762

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1763 KIMGLQKFKMNIANTVIS 1780


>gi|322492128|emb|CBZ27402.1| DNA repair and recombination protein RAD54,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1130

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           + +        +++  +F   L  +                   + K    +  +N    
Sbjct: 808 DELKRNGEHDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVPGS 867

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N L+ F   W+        +   + R  + G K+ VF+
Sbjct: 868 QEVVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKKRVFI 921

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L++  TI+E + QR  +K  +   +++
Sbjct: 922 YRLLSTGTIEEKIYQRQVSKQGLSANVVD 950


>gi|317498269|ref|ZP_07956568.1| SNF2 family domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894478|gb|EFV16661.1| SNF2 family domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 438

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 24/213 (11%)

Query: 2   KQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y + +R+ Y DL G + I A    +K ++  QL  G +  D+ +    V+  K+ AL 
Sbjct: 225 ELYDRIKRDSYADLDGGDHITATTVLTKLLRLQQLTGGFLLQDDSETPVLVNKAKLNALA 284

Query: 61  VIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--------------QE 103
            IIE     +   +++   F  ++  + +   +    +K    I              Q 
Sbjct: 285 DIIEDYVIGSEKKLVIFARFIPEVKAIIEMVDKLLPKNKKQVAIYGDIKKELRGGLVKQF 344

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +    +      + G G+ L    +  V++S  ++   + Q + RI      + G + 
Sbjct: 345 QEDPDTMVFVGQIDTAGTGITLTA-ADTCVYYSKNYNYATYSQSLSRI-----HRIGQRN 398

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 L  + T+DE++ + L  K  +   +++
Sbjct: 399 VCTYIDLEVEKTVDEMINKALSKKEDMAKTVVD 431


>gi|189091948|ref|XP_001929807.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803083|emb|CAD60786.1| unnamed protein product [Podospora anserina]
 gi|188219327|emb|CAP49307.1| unnamed protein product [Podospora anserina S mat+]
          Length = 800

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                    L N                                + K W     + +  +
Sbjct: 506 LKAIGILKNLCNHPDLLKLPDDLPGSEQHYPDDYVPRDSRGRDRDIKPWYSGKMQVLDRM 565

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I       I++  ++   L   +K                 ++K    + ++N+   
Sbjct: 566 LARIRADTNDKIVLISNYTQTLDLFEKLCRSRAYPCLRLDGKMLVNKRQKLVDKFNDPNG 625

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 626 DEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 679

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 680 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 711


>gi|218197711|gb|EEC80138.1| hypothetical protein OsI_21929 [Oryza sativa Indica Group]
 gi|222635083|gb|EEE65215.1| hypothetical protein OsJ_20361 [Oryza sativa Japonica Group]
          Length = 1309

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 29/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------VH 52
           + Y     + Y  L   +    +  +  ++  +L   A   DE +               
Sbjct: 496 EYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALRRLLES 555

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
             K++ L+ ++ K       +++   F   L              +         +    
Sbjct: 556 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 615

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+        +   + R  +
Sbjct: 616 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHR 669

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K
Sbjct: 670 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTK 711


>gi|194205833|ref|XP_001502326.2| PREDICTED: helicase, lymphoid-specific isoform 1 [Equus caballus]
          Length = 837

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 623 MTRMLDILMDYCHFRDFNFSRLDGSMSYSEREKNMHNFNTDPDVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|256072692|ref|XP_002572668.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|238657831|emb|CAZ28900.1| chromodomain helicase DNA binding protein, putative [Schistosoma
           mansoni]
          Length = 1958

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 41/229 (17%)

Query: 7   FQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKHWKE 50
            QR LY  +     E +   N  +  V   ++ N                   E     E
Sbjct: 735 LQRRLYKYILTSNYEELRCGNLMNSIVHLQKVCNHPYLMQIGDSIAPRLNLNDETNGPYE 794

Query: 51  VH-----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L  ++     +   +++   F   L  L++     R           
Sbjct: 795 PKALVQVSSKLVVLMELLRGLFVDDHRVLIFSRFTMMLDLLEQVMINARYKYVRIDGRVR 854

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 TI  +N       +      + G G+NL    + +V +   W+ +      +  
Sbjct: 855 GPLRQVTIDRFNAPDSEYFIFLLSTRAGGEGINL-ASADTVVLYDSDWNPQ-----WDLQ 908

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            ++R  + G  + V +Y  I +++I+E + Q  R K  +  L+++  +K
Sbjct: 909 ALSRAHRIGQSKHVVIYRFITRHSIEEKISQVARRKLALTQLIVDHNQK 957


>gi|81884744|sp|Q6DIC0|SMCA2_MOUSE RecName: Full=Probable global transcription activator SNF2L2;
            AltName: Full=ATP-dependent helicase SMARCA2; AltName:
            Full=BRG1-associated factor 190B; Short=BAF190B; AltName:
            Full=Protein brahma homolog; AltName: Full=SNF2-alpha;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            2
 gi|49523317|gb|AAH75641.1| Smarca2 protein [Mus musculus]
          Length = 1577

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 982  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1041

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1042 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1101

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1102 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1157

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|48255900|ref|NP_003061.3| probable global transcription activator SNF2L2 isoform a [Homo
            sapiens]
 gi|212276472|sp|P51531|SMCA2_HUMAN RecName: Full=Probable global transcription activator SNF2L2;
            AltName: Full=ATP-dependent helicase SMARCA2; AltName:
            Full=BRG1-associated factor 190B; Short=BAF190B; AltName:
            Full=Protein brahma homolog; Short=hBRM; AltName:
            Full=SNF2-alpha; AltName: Full=SWI/SNF-related
            matrix-associated actin-dependent regulator of chromatin
            subfamily A member 2
 gi|55957477|emb|CAI14599.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|55958982|emb|CAI12967.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|119579215|gb|EAW58811.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_a [Homo
            sapiens]
 gi|119579218|gb|EAW58814.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_a [Homo
            sapiens]
          Length = 1590

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 977  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1036

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1037 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1096

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1097 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1152

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1153 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|156549903|ref|XP_001601964.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 899

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 38/204 (18%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH------------------DEKIKALEVIIE--K 65
            +      ++ N    +  EK                          K+K ++ I +  K
Sbjct: 590 LTVITALKKVCNHPYLFTSEKSNILDEVLPSVPTNLSAINTSYSYSSKVKVVQAIFQAIK 649

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN--EGKIPLLF 113
                +++  +F   L  L+K                        +  +N  +    L  
Sbjct: 650 RTNEKVVLVSYFTQTLDFLEKVCCTEGLQFCRLDGHTPAASRTKLVDRFNSKDNSFCLFL 709

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL  G + L+ F   W+        +   + R  + G KR+VF+Y L+  
Sbjct: 710 LSAKAGGVGLNL-VGASRLILFDSDWNPAN-----DAQAMARIWRDGQKRSVFIYRLLTT 763

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
            TI+E + QR  +K+ + + +++A
Sbjct: 764 GTIEEKIYQRQISKTGLSEAVVDA 787


>gi|76879794|dbj|BAE45737.1| putative protein product of Nbla10143 [Homo sapiens]
          Length = 372

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 98  MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 157

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 158 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 217

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 218 TA-ADTVIIYDSDWNPQS-----DPQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 271

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 272 AKRKLEKLIIH 282


>gi|301122081|ref|XP_002908767.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
           infestans T30-4]
 gi|262099529|gb|EEY57581.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
           infestans T30-4]
          Length = 1788

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 36/230 (15%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVY--------------YDEE 45
           + Y          L   G      N  +  ++  +  N                    + 
Sbjct: 694 QWYRAIYERNTSFLNRGGNPRNVPNLMNVMMELRKCCNHPYLNNGVEEILNEGLTTDTQR 753

Query: 46  KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  ++ ++ + N     +++       L  ++        L +       
Sbjct: 754 HEMLVKCCGKMVLIDKLLPRLNDGGHKVLIFSQMVRVLDIIEDYLRYCGYLYERLDGNIR 813

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  + + +    ++     + G GLNL    + ++ F   W+ +      +  
Sbjct: 814 GNDRQAAVDRFVKPEYKRFVMLLSTKAGGLGLNLTA-ADTVIIFDSDWNPQN-----DLQ 867

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G   +V +Y LI + T +  +  +   K  +   +L  +++E
Sbjct: 868 AQARAHRIGQTHSVKIYRLITRKTYEMHMFHKASLKLGLDKAVLTHMRRE 917


>gi|73986600|ref|XP_867692.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 4
            [Canis familiaris]
          Length = 1603

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 73/218 (33%), Gaps = 29/218 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEV---HD 53
             Y   Q +      G   +           +  ++  ++ N    +   + ++       
Sbjct: 1009 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIESFQLDLYRAS 1068

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
             K + L+ I+ K  A    +++     S +  ++  F                +     +
Sbjct: 1069 GKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLL 1128

Query: 102  QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  + 
Sbjct: 1129 KTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRI 1182

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1220


>gi|8953897|gb|AAF82185.1| helicase DOMINO A [Drosophila melanogaster]
          Length = 3201

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 69/184 (37%), Gaps = 19/184 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K      + +       +    +    K++ ++ ++ +   N   +++       L  L
Sbjct: 1631 AKLALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVL 1690

Query: 85   QKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +        +           +    ++ +N + +I        S G G+NL  G + ++
Sbjct: 1691 EAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVI 1749

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+
Sbjct: 1750 FYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDM 1804

Query: 194  LLNA 197
             +  
Sbjct: 1805 AIEG 1808


>gi|296220759|ref|XP_002756460.1| PREDICTED: TATA-binding protein-associated factor 172 [Callithrix
            jacchus]
          Length = 1849

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1529 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1588

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1589 QHPEFKTTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 1648

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1709 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1762

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1763 KIMGLQKFKMNIANTVIS 1780


>gi|158286564|ref|XP_308811.4| AGAP006945-PA [Anopheles gambiae str. PEST]
 gi|157020528|gb|EAA04280.4| AGAP006945-PA [Anopheles gambiae str. PEST]
          Length = 871

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 41/226 (18%)

Query: 6   KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKH---------------- 47
           +  R        E     A +         ++ N       +                  
Sbjct: 515 QLTRTALSFYDSEKGADNAVSPLQLITILKKICNHPSLVSVQGKGDPESLVHLLAEQLPP 574

Query: 48  ---WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR----------LQKAFPQGR 92
                     K+  +E ++E        I++  +++  L                     
Sbjct: 575 WQRMGPTDSAKLGIVEALLEAMLAMQEKIVIVSYYSKTLDMIGGLCDHYNYKYCRLDGST 634

Query: 93  TLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +  +N       +L     + G GLNL  G + LV +   W+        + 
Sbjct: 635 AGPDRSRIVAAFNNPANDSFILLLSAKAGGAGLNL-IGASRLVLYDNDWNPAN-----DL 688

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++R  + G ++ VF+Y L+   +I+E + QR  +K+++   +++
Sbjct: 689 QAMSRVWRDGQRKPVFIYRLLTAYSIEERIFQRQISKTSLSGTVVD 734


>gi|322698448|gb|EFY90218.1| TBP associated factor (Mot1), putative [Metarhizium acridum CQMa 102]
          Length = 1893

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 59/248 (23%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------- 49
            K +  F ++    LQ      +     +         +L N      +            
Sbjct: 1565 KLFEDFTKKQGKKLQSEAGRDDKEAKQHIFQALQYMRKLCNSPAMVMKPGTPVYDDTQKI 1624

Query: 50   ----------EVHDEKIKALEVII-----------------EKANAAPIIVAYHFNSDLA 82
                       +H  K+ AL+ ++                 +       ++       L 
Sbjct: 1625 LQRQGTSIEDTIHAPKLTALKDLLVDCGIGGDDGDTNDPLYQPIKPHRALIFCQMKEMLD 1684

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             ++K                     +K    + ++N +    +L    +  G GLNL  G
Sbjct: 1685 MVEKKVLKELLPSVSHLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-G 1743

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K 
Sbjct: 1744 ADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKI 1798

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1799 DVASTVVN 1806


>gi|301761472|ref|XP_002916159.1| PREDICTED: TATA-binding protein-associated factor 172-like
            [Ailuropoda melanoleuca]
          Length = 1865

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1545 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1604

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1605 QHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESIVAQHRIL 1664

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1665 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1724

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1725 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1778

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1779 KIMGLQKFKMNIANTVIS 1796


>gi|195486513|ref|XP_002091544.1| domino [Drosophila yakuba]
 gi|194177645|gb|EDW91256.1| domino [Drosophila yakuba]
          Length = 3195

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ ++ ++ +   N   ++V       L  L+    
Sbjct: 1642 LHPITSAMTTQFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLVFTQMTKMLDVLESFLN 1701

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1702 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 1760

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1761 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLTDMAIEG 1814


>gi|296422807|ref|XP_002840950.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637177|emb|CAZ85141.1| unnamed protein product [Tuber melanosporum]
          Length = 1046

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 36/225 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK----IKA 58
            Y +F           +    +  +  ++  ++ N    ++  +       +K       
Sbjct: 652 LYEEFMSMAKTRETLASGNYLSIINCLMQLRKVCNHPDLFETRQIVTSFAMQKSVVADYE 711

Query: 59  LEVIIEKAN---------------AAPIIVAYHFNSDLARLQKAFPQGRTLD-------- 95
           ++ ++                       ++       L  L++                 
Sbjct: 712 VKELLYDCGKLQRLDLLLRQLQAGGHRALIFTQMTKVLDILEQFLNIHGHRYLRLDGATK 771

Query: 96  --KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +       +N   +I +      S G G+NL  G + ++F+ L W+       +++  
Sbjct: 772 VEQRQILTDRFNNDTRILVFILSTRSGGLGINLT-GADTVIFYDLDWNPA-----MDKQC 825

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G  R V +Y  +++ TI+  +L++   K  + D+++  
Sbjct: 826 QDRCHRIGQTRDVHIYRFVSEYTIESNILRKSNQKRMLDDVVIQE 870


>gi|281203782|gb|EFA77978.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2536

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 36/224 (16%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           K Y     + +  L +G      +  +  ++  +  N        +  +           
Sbjct: 687 KYYRAIYEKNFTFLRKGGKGNGPSLLNIMMELRKCCNHPYLIKGAEDSETSMLMKNSDAI 746

Query: 53  -------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  ++ ++ K       +++     S L  L         L +       
Sbjct: 747 YHKLIQASGKLVLIDKLLPKLKAGNHKVLIFSQMVSVLDILDDYLTFRGYLHERIDGSIK 806

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  ++       +      + G G+NL    + ++ F   W+ +      +  
Sbjct: 807 AEDRQAAIDRFSAPDSDRFVFLLCTRAGGMGINLTA-ADTVIIFDSDWNPQN-----DLQ 860

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R  + G  + V VY L+ +NT + ++  R   K  +   +L
Sbjct: 861 AQARCHRIGQDKMVKVYRLVTRNTYERIMFDRASKKLGLDRAVL 904


>gi|241950361|ref|XP_002417903.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
 gi|223641241|emb|CAX45621.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
           recombination protein, putative [Candida dubliniensis
           CD36]
          Length = 839

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 73/221 (33%), Gaps = 48/221 (21%)

Query: 26  ASKTVKCLQLANGAVYYD--------------------------EEKHWKEVHDEKIKAL 59
                   +L N     D                            +  +     K   L
Sbjct: 542 LKAIGMLKKLCNHPDLLDLPDDIEGSADLIPDDYQSSIAGGSAGRNREIQTWFSGKFLIL 601

Query: 60  EVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           E  + K N      I++  ++   L  ++K                 ++K    + ++N+
Sbjct: 602 ERFLRKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLVDKFND 661

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P  +      + G G+NL  G N LV     W+    Q       + R  + G K+ 
Sbjct: 662 PNGPEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQ-----QALARVWRDGQKKD 715

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            F+Y LI+  TI+E + QR   K ++   +++  K++   +
Sbjct: 716 CFIYRLISTGTIEEKIFQRQSMKMSLSSCVVDE-KEDVERL 755


>gi|123977054|ref|XP_001330700.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121897443|gb|EAY02564.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 822

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVH-DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ--- 85
             ++ N    +DE+K+        K K L  I+          ++       L+ L+   
Sbjct: 460 LQEICNHPNIFDEQKYSTNPKMSCKTKLLMKILPQWHKEGHRCLLFAQSLKMLSILEEIM 519

Query: 86  ------KAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      G T  +    I   +N G            G G+NL  G + ++     
Sbjct: 520 TNLNLEFFRMDGDTPPERRIVIMDRFNHGDKFACLLSKKVGGLGINLT-GADRVIIIEPD 578

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+        +   + R  + G  ++V VY LI   TI+E + ++   K  + + ++   
Sbjct: 579 WNPST-----DEQALERAYRIGQTKSVSVYRLICVGTIEEKIYKKQIFKQILSNTIMQDA 633

Query: 199 KKETI 203
           +++ +
Sbjct: 634 RQKRL 638


>gi|322707181|gb|EFY98760.1| TBP associated factor (Mot1), putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1895

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 59/248 (23%)

Query: 2    KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------- 49
            K +  F ++    LQ      +     +         +L N      +            
Sbjct: 1567 KLFEDFTKKQGKKLQSEAGRDDKEAKQHIFQALQYMRKLCNSPAMVMKPGTPVYDDTQKI 1626

Query: 50   ----------EVHDEKIKALEVII-----------------EKANAAPIIVAYHFNSDLA 82
                       +H  K+ AL+ ++                 +       ++       L 
Sbjct: 1627 LQRQGTSIEDTIHAPKLTALKDLLVDCGIGGDDGDTNDPLYQPIKPHRALIFCQMKEMLD 1686

Query: 83   RLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             ++K                     +K    + ++N +    +L    +  G GLNL  G
Sbjct: 1687 MVEKKVLKELLPSVSHLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-G 1745

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K 
Sbjct: 1746 ADTVIFVEHDWNPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSLQRFKI 1800

Query: 189  TIQDLLLN 196
             +   ++N
Sbjct: 1801 DVASTVVN 1808


>gi|297833338|ref|XP_002884551.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330391|gb|EFH60810.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1130

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIK 57
           Y +        LQ  + ++ +  + T++  +  N    +    +             K +
Sbjct: 686 YKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGKFE 745

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
            L+ ++ K       I++       +                       D+    ++++N
Sbjct: 746 LLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFN 805

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E   P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 806 EPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 859

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 860 EVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 893


>gi|254570653|ref|XP_002492436.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238032234|emb|CAY70235.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328353550|emb|CCA39948.1| DNA repair and recombination protein RAD54 and RAD54-like protein
           [Pichia pastoris CBS 7435]
          Length = 838

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 45/234 (19%)

Query: 3   QYHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
            Y +F   +    L  E      S        +L       +  +  +            
Sbjct: 520 LYQRFTASKSISKLVKEVGGGAQSLQSIGLLKKLCTHPNLLNLPEDIEGCENLLPDDYDY 579

Query: 52  -------------HDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQG---- 91
                        H  K   L+  + K N      I++  ++   L  ++K         
Sbjct: 580 GHGNRRNREVQVWHSSKFLILQRFLYKINKETNDKIVIISNYTQTLDLIEKLCISSRYGS 639

Query: 92  ------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   ++K    + ++N  +    +      + G G+NL  G N L+     W+   
Sbjct: 640 LRLDGTMNINKRQKLVDKFNNPEGKEFVFLLSSKAGGCGINL-IGANRLILVDPDWNPAS 698

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q       + R  + G  +  F+Y  IA  +I+E + QR   K  +   ++++
Sbjct: 699 DQ-----QALARVWRDGQTKNCFIYRFIATGSIEEKIFQRQSAKLQLSSCVVDS 747


>gi|189188400|ref|XP_001930539.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972145|gb|EDU39644.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1794

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN-E 106
             + E  +    +V       L  +Q                  G    K    + ++N +
Sbjct: 1559 DLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGVEATKRQEIVNKFNTD 1618

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++     +   + R  + G K+ V 
Sbjct: 1619 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVN 1672

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  I   ++N
Sbjct: 1673 VYRIVTRGTLEEKILNLQRFKIDIASTVVN 1702


>gi|50551961|ref|XP_503455.1| YALI0E02332p [Yarrowia lipolytica]
 gi|49649324|emb|CAG79034.1| YALI0E02332p [Yarrowia lipolytica]
          Length = 1028

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 79/226 (34%), Gaps = 31/226 (13%)

Query: 1   MKQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           +K Y K   +    + G   +        +  ++  +  N    +               
Sbjct: 396 VKWYQKILEKDIDAVNGQIGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 455

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDP 98
             +  K+  L+ ++   +   + +++    +  L            +     G+T  +D 
Sbjct: 456 VYNAGKMVILDKLLKRIQEQGSRVLIFSQMSRVLDILEDYCLFRGYKYCRIDGQTAHEDR 515

Query: 99  -CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I  +N+      +      + G G+NL    + +V +   W+ +      +   + R
Sbjct: 516 INAIDAYNKEGSEKFVFLLTTRAGGLGINLTT-ADQVVLYDSDWNPQA-----DLQAMDR 569

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  + V+VY  I +N ++E V++R   K  +  L++   + +
Sbjct: 570 AHRIGQTKQVYVYRFITENAVEEKVIERATQKLRLDKLVIQQGRSQ 615


>gi|169621462|ref|XP_001804141.1| hypothetical protein SNOG_13941 [Phaeosphaeria nodorum SN15]
 gi|160704260|gb|EAT78566.2| hypothetical protein SNOG_13941 [Phaeosphaeria nodorum SN15]
          Length = 1274

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 7   FQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYY-------DEEKHWKEVHDEKIK 57
            ++ +  +     +++      +  ++  +  +                        K  
Sbjct: 612 MRQTIEKEQGSSEVKSAWQKLMNLVMQLRKCCSHPYLLPRVSPDPYYLGDHIIRASGKFI 671

Query: 58  ALEVIIEK---ANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPC 99
            LE +I+         +++   F   L   +                 F       K   
Sbjct: 672 LLEKLIKHTVMNQGKKVLIFSGFTRTLDYTEDLLSLISNHGRDFKHLRFDGSTARAKRNL 731

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N       ++     + G G+NL      ++F    W+ +            R  
Sbjct: 732 DIRLFNQESSDYKVMLLSTRAGGLGINLTS-AQDVIFLDEDWNPQITL-----QAEARAH 785

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  + V +Y +  Q T++E ++ R+R K  +   +  +++
Sbjct: 786 RIGQTKKVTIYKICTQGTVEEQMMGRIRKKLYLSAKITESMR 827


>gi|119596384|gb|EAW75978.1| chromodomain helicase DNA binding protein 6, isoform CRA_e [Homo
           sapiens]
          Length = 2731

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 744 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 803

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 804 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 863

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 864 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 920

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 921 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 974


>gi|321479460|gb|EFX90416.1| hypothetical protein DAPPUDRAFT_232072 [Daphnia pulex]
          Length = 2083

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 1078 KYYKYVLTRNFEALNSRTGGQQVSLLNIMMDLKKCCNHPYLFPVASQEAPCLQNGMYETT 1137

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L  ++   K     +++       L  L+      +   +         
Sbjct: 1138 ALVKASGKLVLLSKMLRVLKEQGHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGT 1197

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P  +      + G G+NL    + +V +   W+        +    
Sbjct: 1198 LRQDAIDRFNAPGAPQFVFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HNDIQAF 1251

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1252 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKKKMMLTHLVV 1293


>gi|281211051|gb|EFA85217.1| myb domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1186

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 78/235 (33%), Gaps = 42/235 (17%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS------------ASKTVKCLQLANGAVYY--- 42
           +K Y      QRE Y  L  ++ EA +              +  ++  +  N    +   
Sbjct: 420 IKLYVGLSAMQREWYKRLLSKDFEALHGVGVKGSSGRVKLLNICMQLRKACNHPYLFDGA 479

Query: 43  ----DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR----------LQK 86
                        +  K+  L+ ++   K   + +++   +   L               
Sbjct: 480 EEQPYTTGDHLINNSGKMVLLDKLLGRLKQRGSRVLIFSQWARMLDILEDYLLYRDYSYC 539

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                         I+ +NE      +      + G G+ L    ++++ F   W+ +  
Sbjct: 540 RIDGSTDSQTRENYIESFNEPGSKHFVFILTTRAGGLGITL-NTADVVILFDSDWNPQ-- 596

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              ++     R  + G  + V VY  + +++++E ++++   K  +  +++   +
Sbjct: 597 ---MDLQAQDRAHRIGQTKPVTVYRFVTESSMEEKMVEKAELKLQLDAVVIQQGR 648


>gi|254572850|ref|XP_002493534.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
 gi|238033333|emb|CAY71355.1| Member of the imitation-switch (ISWI) class of ATP-dependent
           chromatin remodeling complexes [Pichia pastoris GS115]
          Length = 983

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 31/225 (13%)

Query: 1   MKQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWK 49
           +K Y     +    +    G+        +  ++  +  N    ++  +           
Sbjct: 338 IKLYRNLLEKDIDAVNCGFGKREGKTRLLNIVMQLRKCCNHPYLFEGVEPGPPFTTDEHL 397

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   K   + +++    +  L  L+                   +  
Sbjct: 398 VYNSAKMIVLDKLLKKMKEQGSRVLIFSQMSRLLDILEDYCFFREYEYCRIDGSTAHEDR 457

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 458 INAIDEYNKPDSKKFIFLLTTRAGGLGINLTS-ADIVVLYDSDWNPQA-----DLQAMDR 511

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 512 AHRIGQKKQVQVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 556


>gi|195062800|ref|XP_001996256.1| GH22391 [Drosophila grimshawi]
 gi|193899751|gb|EDV98617.1| GH22391 [Drosophila grimshawi]
          Length = 1659

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLF 113
            KA    +++       +  L++     +              +            I +  
Sbjct: 1189 KAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFL 1248

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G G+NL    + ++F+   W+       +++  + R  + G  + V VY LI +
Sbjct: 1249 LSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICK 1302

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             TI+E +LQR R KS IQ ++++ 
Sbjct: 1303 GTIEERILQRAREKSEIQRMVISG 1326


>gi|145359958|ref|NP_178970.3| CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin
            binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|330251136|gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana]
          Length = 1724

 Score = 95.6 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 873  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLD 932

Query: 51   ---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
               +   K+  L+ ++ +       +++       L  L +         +         
Sbjct: 933  KIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAE 992

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + +V F   W+ +      +   +
Sbjct: 993  LRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQN-----DLQAM 1046

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1047 SRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1095


>gi|302693046|ref|XP_003036202.1| hypothetical protein SCHCODRAFT_50771 [Schizophyllum commune H4-8]
 gi|300109898|gb|EFJ01300.1| hypothetical protein SCHCODRAFT_50771 [Schizophyllum commune H4-8]
          Length = 1898

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 20/182 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---- 83
            K +   QL             +    E I A        +   +++       L      
Sbjct: 1648 KLLALKQLLTDCGIGVTASAAESGKSELIDAGPESAGAFSQHRVLIFCQMKQMLDIIESD 1707

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                            G    K    +Q +N +  I  L       G GL L  G + ++
Sbjct: 1708 LFKQHMPSVTYMRLDGGTDASKRHAIVQTFNSDPSIDCLLLTTHVGGLGLTLT-GADTVI 1766

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+      M +   + R  + G K+ V VY LI + T++E ++   R K  I + 
Sbjct: 1767 FVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITKGTLEEKIMGLQRFKLNIANS 1821

Query: 194  LL 195
            ++
Sbjct: 1822 VV 1823


>gi|296220830|ref|XP_002756503.1| PREDICTED: lymphoid-specific helicase isoform 5 [Callithrix
           jacchus]
          Length = 739

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 465 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 524

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 525 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 584

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 585 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 638

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 639 AKRKLEKLIIH 649


>gi|19421557|gb|AAK56405.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
          Length = 2713

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 766

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|48255898|ref|NP_620614.2| probable global transcription activator SNF2L2 isoform b [Homo
            sapiens]
 gi|55957478|emb|CAI14600.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|55958983|emb|CAI12968.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Homo sapiens]
 gi|119579217|gb|EAW58813.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_c [Homo
            sapiens]
 gi|119579219|gb|EAW58815.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2, isoform CRA_c [Homo
            sapiens]
 gi|162318924|gb|AAI56186.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [synthetic construct]
 gi|307686381|dbj|BAJ21121.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [synthetic construct]
          Length = 1572

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 977  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1036

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1037 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1096

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1097 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1152

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1153 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1201


>gi|195391896|ref|XP_002054595.1| GJ24541 [Drosophila virilis]
 gi|194152681|gb|EDW68115.1| GJ24541 [Drosophila virilis]
          Length = 1632

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 +K        K+  L+ ++   KA    +++       +  L++     +     
Sbjct: 1156 SIVVPDKETLITDAGKLFVLDSLLTRLKAEGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 1215

Query: 96   ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +            I +      + G G+NL    + ++F+   W+      
Sbjct: 1216 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1270

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1271 -VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1320


>gi|193787140|dbj|BAG52346.1| unnamed protein product [Homo sapiens]
          Length = 979

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 474 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSNDGS 533

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ +++K       +++       L  L+          +         
Sbjct: 534 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 593

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 594 LRQEAIDRFNAPGAQQFCFLLSTRASGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 647

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 648 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 689


>gi|291404432|ref|XP_002718428.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Oryctolagus cuniculus]
          Length = 1858

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1538 VQLYEDFAKSRAKCDVDETVSSVTLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTS 1597

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1598 QHPEFKSTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGGTSESGTESVVAQHRIL 1657

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1658 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1717

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1718 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1771

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1772 KIMGLQKFKMNIANTVIS 1789


>gi|114682033|ref|XP_001148096.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 3
           [Pan troglodytes]
 gi|114682035|ref|XP_001148168.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 4
           [Pan troglodytes]
 gi|114682037|ref|XP_001148245.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 5
           [Pan troglodytes]
 gi|114682039|ref|XP_001148310.1| PREDICTED: chromodomain helicase DNA binding protein 6 isoform 6
           [Pan troglodytes]
          Length = 2713

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 766

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|73946647|ref|XP_860406.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 22 [Canis familiaris]
          Length = 1552

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 36/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +  K+      
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEKKKKKRKERG 1022

Query: 53   ------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                    K + L+ I+ K  A    +++     S +  ++  F                
Sbjct: 1023 AELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKS 1082

Query: 95   DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +   
Sbjct: 1083 EDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQA 1136

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1181


>gi|302791647|ref|XP_002977590.1| hypothetical protein SELMODRAFT_450749 [Selaginella moellendorffii]
 gi|300154960|gb|EFJ21594.1| hypothetical protein SELMODRAFT_450749 [Selaginella moellendorffii]
          Length = 2094

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + LQ   G +          +   K +    +I       + +   F +           
Sbjct: 1106 RLLQFDCGKLQQL----SVLLRRLKSEGHRALIFTQMTKMLDILESFINLYGYNYMRLDG 1161

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1162 STKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1215

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    R  + G  R V +Y L++++TI+E +L++   K  + +L++ +
Sbjct: 1216 QQAQDRCHRIGQTREVHIYRLVSESTIEENILKKANQKRFLDNLVIQS 1263


>gi|301098711|ref|XP_002898448.1| SNF2 family helicase/ATPase and F-box protein, putative [Phytophthora
            infestans T30-4]
 gi|262105219|gb|EEY63271.1| SNF2 family helicase/ATPase and F-box protein, putative [Phytophthora
            infestans T30-4]
          Length = 2503

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK- 96
             +  +K   +    K++ L V++   K      ++    +S L  L+      G T  + 
Sbjct: 1064 LFFPDKALVQFDCGKLQQLAVLLRTLKRGGHRCLIFTQMSSMLNILEAFLNLHGHTYFRL 1123

Query: 97   --------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        ++ +N + KI        S G G+NL  G + ++F+   W+       
Sbjct: 1124 DGATKVDKRQMLMERFNRDEKIFCFILSTRSGGLGINLT-GADAVIFYDSDWNPA----- 1177

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++     R  + G  R V +Y L++++T++E +L++ + K  +  L+++ 
Sbjct: 1178 MDAQAQDRAHRIGQTRDVHIYRLVSEHTVEENILRKAQQKRHLDFLVMSE 1227


>gi|42407259|dbj|BAD10846.1| lymphoid specific helicase variant3 [Homo sapiens]
 gi|119570413|gb|EAW50028.1| helicase, lymphoid-specific, isoform CRA_c [Homo sapiens]
          Length = 806

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 532 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 591

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 592 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 651

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 652 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 705

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 706 AKRKLEKLIIH 716


>gi|68467321|ref|XP_722322.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
 gi|68467550|ref|XP_722208.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444164|gb|EAL03441.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
 gi|46444289|gb|EAL03565.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
          Length = 848

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 48/226 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYD--------------------------EEKHWKEVHDE 54
                        +L N     D                            +  +     
Sbjct: 546 TGSQPLKAIGMLKKLCNHPDLLDLPEDVEGSEEFIPDDYQSSIAGGSASRNREIQTWFSG 605

Query: 55  KIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
           K   LE  ++K N      I++  ++   L  ++K                 ++K    +
Sbjct: 606 KFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLV 665

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N+   P  +      + G G+NL  G N LV     W+    Q       + R  + 
Sbjct: 666 DKFNDPNGPEFIFLLSSKAGGCGINL-IGANRLVLMDPDWNPASDQ-----QALARVWRD 719

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G K+  F+Y  I+  TI+E + QR   K ++   +++  K++   +
Sbjct: 720 GQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE-KEDVERL 764


>gi|296214425|ref|XP_002753816.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8 isoform 1
            [Callithrix jacchus]
          Length = 2583

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1059 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1118

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1119 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1178

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1179 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1235

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1236 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1288


>gi|156544311|ref|XP_001607169.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1587

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1009 LYKHMQSKGVLLTDGSEKGKRGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYSEHLGIQ 1068

Query: 53   -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------- 90
                           K + L+ I+ K       +++       +  ++            
Sbjct: 1069 GVGLISGPDLYRASGKFELLDRILPKLKATGHRVLLFCQMTQLMTIMEDYLNWRGFRYLR 1128

Query: 91   ---GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +     ++ +N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1129 LDGTTKAEDRGDLLKRFNDPSSDYFLFILSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1185

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1186 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1234


>gi|146324514|ref|XP_751168.2| dsDNA-dependent ATPase Rad54 [Aspergillus fumigatus Af293]
 gi|129557284|gb|EAL89130.2| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           Af293]
          Length = 807

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 509 LKAIGILKKLCNHPDLLDLTRDLPGCEHTFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 568

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 569 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNINKRQKLVDKFNNPDG 628

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 629 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 682

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 683 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 714


>gi|58260984|ref|XP_567902.1| helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229983|gb|AAW46385.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 926

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 75/219 (34%), Gaps = 34/219 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKA 58
           RE       +++      +  ++  ++++    +D                     K+  
Sbjct: 592 REWALKQATKHVNNMRLQNLVMQLRKISSHPYLFDWPSDPATGELVVDDNLVNASGKMLL 651

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN 105
           L  +++        +++   F + L                        +     + E+N
Sbjct: 652 LNRLLDALFQKGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTPQESRREQMDEFN 711

Query: 106 EGK-----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            GK       L      + G G+NL    + ++FF   W+ +     ++     R  + G
Sbjct: 712 GGKDDPNACKLFLLSTRAGGLGINLVS-ADTVIFFDQDWNPQ-----MDLQAQDRAHRIG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V V+ L++ +TI+  +L +   K  ++ L+++  K
Sbjct: 766 QTKPVLVFRLVSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|169763362|ref|XP_001727581.1| SNF2 family helicase/ATPase PasG [Aspergillus oryzae RIB40]
 gi|83770609|dbj|BAE60742.1| unnamed protein product [Aspergillus oryzae]
          Length = 868

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 26/219 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKA 58
            + +R     L  + +      +  ++     N    +    + + V         K+  
Sbjct: 574 EEIERAKTFKLAKQEVAQKKMQNPVMQARLACNSPHNFYWPWNDEPVDESLITASGKMLL 633

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEW 104
           L+ ++ +  AN   I++   F S L  LQ    Q R+             D+        
Sbjct: 634 LDRLVTRLLANGHKILIFSQFKSQLDILQDWATQLRSWNCCRIDGAISQTDRRDQIKAFN 693

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  R 
Sbjct: 694 TDPDYKIFLLSTRAGGQGINLMA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTRP 747

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 748 VIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 786


>gi|296220826|ref|XP_002756501.1| PREDICTED: lymphoid-specific helicase isoform 3 [Callithrix
           jacchus]
          Length = 805

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 531 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 590

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 591 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 650

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 651 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 704

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 705 AKRKLEKLIIH 715


>gi|300793896|ref|NP_001178846.1| TATA-binding protein-associated factor 172 [Rattus norvegicus]
 gi|293344714|ref|XP_001080159.2| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, (Mot1 homolog, S. cerevisiae) [Rattus
            norvegicus]
          Length = 1855

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1535 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1594

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1595 QHPEFKNTTEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGTSSESGTESVVAQHRIL 1654

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1655 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1714

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1715 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1768

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1769 KIMGLQKFKMNIANTVIS 1786


>gi|213406579|ref|XP_002174061.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212002108|gb|EEB07768.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 1603

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
               K+  L+ ++ +  AN   ++V +     +  +++                +   +  
Sbjct: 1425 DSGKLSKLDKLLAELKANDHRVLVYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1484

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +      + +      + G G+NL    + +VF+   W+       I+   + R  +
Sbjct: 1485 MVSEWQTRPDLFVFLLSTRAGGLGINLTA-ADTVVFYDSDWNPS-----IDSQAMDRAHR 1538

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G ++ V VY  I + TI+E ++ R + K  +Q ++++  +  
Sbjct: 1539 IGQQKQVTVYRFITKGTIEERIVHRAKEKEEVQKVVISGGESR 1581



 Score = 34.7 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 3    QYHKFQRE-LYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +R+    +L  +     +    +  +  ++  ++ N    ++ E     +     
Sbjct: 1103 LYQALRRQISVTELLEKAKSGADDSVASIMNLVMQFRKVCNHPDLFEREDVHSPLSLASY 1162

Query: 57   KALEVIIEKAN 67
                 I  + N
Sbjct: 1163 SQSHFINREGN 1173


>gi|114631881|ref|XP_001151143.1| PREDICTED: helicase, lymphoid-specific isoform 8 [Pan troglodytes]
          Length = 806

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 532 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 591

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 592 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 651

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 652 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 705

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 706 AKRKLEKLIIH 716


>gi|114631895|ref|XP_001151399.1| PREDICTED: helicase, lymphoid-specific isoform 12 [Pan troglodytes]
          Length = 861

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 548 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 607

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 608 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 667

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 668 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 721

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 722 AKRKLEKLIIH 732


>gi|70997575|ref|XP_753531.1| nucleosome remodeling complex ATPase subunit (Snf2h) [Aspergillus
           fumigatus Af293]
 gi|66851167|gb|EAL91493.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus fumigatus Af293]
          Length = 986

 Score = 95.2 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNS 79
            ++  +       +        E          K   L+ +++        +IV  +F+ 
Sbjct: 496 LMELRKCCIHPYLFADAIPSPYELGEHLIHQSGKFLVLKKLLQYYVTTETKVIVFSNFDQ 555

Query: 80  DLARLQKAFPQGRTLDK---------------DPCTIQ-EWNEGKIPLLFAHPASCGHGL 123
            L   +      +  ++                   +    N+ +  +      + G GL
Sbjct: 556 CLNLCEDLVMMLQGSNRAFEYARLDGRTTGPWRKVMVHLFQNDPRYKVFLVSIRAGGEGL 615

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +++VF    W+ +     + R    R  + G  R V +Y L +  T++E + +R
Sbjct: 616 NLTS-SSVVVFLDEDWNPQ-----VMRQAEARVHRIGQTRPVVIYKLRSAGTVEEQMSRR 669

Query: 184 LRTKSTIQDLLLN 196
           L  K+ + D +  
Sbjct: 670 LVKKAYVADRVTE 682


>gi|332024911|gb|EGI65099.1| DNA repair and recombination protein RAD54-like protein [Acromyrmex
           echinatior]
          Length = 681

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 42/228 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------ 52
              +R +  +   +   + ++ +      +L N      ++   K               
Sbjct: 366 DSIKRSMEENDNPKKTGSLSALAAITLLKKLCNHPDLIYDKIKEKADGLEKAASLLPPNY 425

Query: 53  ---------DEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ---------- 90
                      K+  L+ ++          I++  ++   L   +K   +          
Sbjct: 426 SAKELMPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCHKRSYNYVRLDG 485

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ K    +  +N       +      + G GLNL  G N LV F   W+        
Sbjct: 486 TMTIKKRAKVVDNFNSDSSNDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN----- 539

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K+  FVY  ++  TI+E + QR   K  +   +++
Sbjct: 540 DDQAMARVWRDGQKKPCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 587


>gi|188996818|ref|YP_001931069.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931885|gb|ACD66515.1| Non-specific serine/threonine protein kinase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 559

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 83/221 (37%), Gaps = 34/221 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +     +     +   N      K  Q+ N           + +H  K++ L+
Sbjct: 341 LNLYERIK----YEKNFNYMMKQNLIFSLQKLRQICNFP--------PESIHSPKVERLK 388

Query: 61  VIIEK--ANAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTIQEW 104
            I+++       +++  +F ++                ++       +  +K+    +  
Sbjct: 389 EIVKELADQKEKVVIFTNFVNEGVDKIIKNIKTILQPQQIVSYHGSLKPDEKNLAVKKFV 448

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GL L    + ++FF L W+  +           R  + G K  
Sbjct: 449 EDEKCLVFVGTINAAGEGLTLTS-SSYVIFFDLHWNPAKMW-----QAEDRVHRIGQKNK 502

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V +Y  I QNT++E ++Q+L  K ++ + +++ +  +   V
Sbjct: 503 VNIYTFITQNTVEEKIMQKLEEKRSMINNVIDDVSSDIESV 543


>gi|157870081|ref|XP_001683591.1| DNA repair and recombination protein RAD54 [Leishmania major strain
           Friedlin]
 gi|68126657|emb|CAJ04466.1| putative DNA repair and recombination protein RAD54 [Leishmania
           major strain Friedlin]
          Length = 1127

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           + +        +++  +F   L  +                   + K    +  +N    
Sbjct: 802 DELKGNGEHDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVPGS 861

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N L+ F   W+        +   + R  + G K+ VF+
Sbjct: 862 QEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKKCVFI 915

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L++  TI+E + QR  +K  +   +++
Sbjct: 916 YRLLSTGTIEEKIYQRQVSKQGLSANVVD 944


>gi|297479287|ref|XP_002690695.1| PREDICTED: chromodomain helicase DNA binding protein 8 [Bos taurus]
 gi|296483394|gb|DAA25509.1| chromodomain helicase DNA binding protein 8 [Bos taurus]
          Length = 2540

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 1016 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 1075

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 1076 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1135

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1136 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1192

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1193 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1245


>gi|119391227|dbj|BAF41982.1| TBP-associated factor 170 [Mus musculus]
          Length = 1848

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1528 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1587

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1588 QHPEFKSTTEKLTVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSSTESGTESVVAQHRIL 1647

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1648 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1707

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1708 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1761

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1762 KIMGLQKFKMNIANTVIS 1779


>gi|123858774|ref|NP_001074175.1| TATA-binding protein-associated factor 172 [Mus musculus]
          Length = 1848

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1528 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1587

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1588 QHPEFKSTTEKLTVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSSTESGTESVVAQHRIL 1647

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1648 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1707

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1708 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1761

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1762 KIMGLQKFKMNIANTVIS 1779


>gi|83767454|dbj|BAE57593.1| unnamed protein product [Aspergillus oryzae]
          Length = 815

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 517 LKAIGLLKKLCNHPDLLNLSTDLPGCEFAFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 576

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 577 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNVNKRQKLVDKFNNPDG 636

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 637 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 690

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 691 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 722


>gi|223985797|ref|ZP_03635840.1| hypothetical protein HOLDEFILI_03146 [Holdemania filiformis DSM
            12042]
 gi|223962245|gb|EEF66714.1| hypothetical protein HOLDEFILI_03146 [Holdemania filiformis DSM
            12042]
          Length = 1073

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                  +   +  Q+        +    +     K+ A   +IE    +   I+V   F 
Sbjct: 873  SKIMILAMLTRLRQICCDPGLVFDGYGGE---RSKLTACMELIENAVESGKKILVFSQFT 929

Query: 79   SDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            + L +L+    +               +    ++ +N  K P+      + G GLNL  G
Sbjct: 930  TILDKLRGECEKRGIGTYLLTGATPKQQRFDLMESFNRDKTPVFLISLKAGGTGLNLT-G 988

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
              I++ +  WW+L       E     R  + G  R V V  LI + T++E +
Sbjct: 989  AEIVIHYDPWWNLSA-----ENQATDRAYRIGQTRNVQVVKLIVEGTVEEKI 1035


>gi|29244924|ref|NP_115597.3| chromodomain-helicase-DNA-binding protein 6 [Homo sapiens]
 gi|296439466|sp|Q8TD26|CHD6_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 6;
           Short=CHD-6; AltName: Full=ATP-dependent helicase CHD6;
           AltName: Full=Radiation-induced gene B protein
 gi|56203260|emb|CAI22255.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|56203561|emb|CAI21744.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|57208321|emb|CAI42977.1| chromodomain helicase DNA binding protein 6 [Homo sapiens]
 gi|119596381|gb|EAW75975.1| chromodomain helicase DNA binding protein 6, isoform CRA_b [Homo
           sapiens]
 gi|225000154|gb|AAI72397.1| Chromodomain helicase DNA binding protein 6 [synthetic construct]
          Length = 2715

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 709 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 768

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 769 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 828

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 829 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 885

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 886 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 939


>gi|70982334|ref|XP_746695.1| SNF2 family helicase/ATPase (Swr1) [Aspergillus fumigatus Af293]
 gi|74666640|sp|Q4WAS9|SWR1_ASPFU RecName: Full=Helicase swr1
 gi|66844319|gb|EAL84657.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus fumigatus
            Af293]
 gi|159123062|gb|EDP48182.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus fumigatus
            A1163]
          Length = 1695

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1362 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1417

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I +      S G G+NL  G + ++F+ L W+
Sbjct: 1418 GHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLT-GADTVIFYDLDWN 1476

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  ++++TI+  +L++   K  + D+++   +
Sbjct: 1477 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVIQEGE 1530


>gi|296200471|ref|XP_002806815.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 6-like [Callithrix jacchus]
          Length = 2692

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 687 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 746

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 747 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 806

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 807 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 863

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 864 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|296411575|ref|XP_002835506.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629290|emb|CAZ79663.1| unnamed protein product [Tuber melanosporum]
          Length = 812

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 518 LKAIGLLKKLCNHPDLLNLSEDLPGCESLYPDDYVPKDARGRDREVKVWYSGKMMVLDRM 577

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I++     I++  ++   L   +K                   K    + ++N+   
Sbjct: 578 LARIQRETKDKIVLISNYTQTLDVFEKLCRSRGYGALRLDGTMNGSKRTKLVAKFNDPDS 637

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 638 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 691

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   +++ ++
Sbjct: 692 YRFIATGTIEEKIFQRQSHKQSLSTSVVDGVE 723


>gi|255720466|ref|XP_002556513.1| KLTH0H15158p [Lachancea thermotolerans]
 gi|238942479|emb|CAR30651.1| KLTH0H15158p [Lachancea thermotolerans]
          Length = 1021

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 81/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++++A N             +  ++  +  N    +            
Sbjct: 368 DMQVQWYKSLLEKDLDAVNGAIGKREGNTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 427

Query: 47  HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++K     + +++    +  L  L+                 + 
Sbjct: 428 EHLIFNAGKMIVLDKLLKKKREAGSRVLIFSQMSRLLDILEDYCFFREYSYCRIDGSTSH 487

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I ++NE      +      + G G+NL    + +V +   W+ +      +   
Sbjct: 488 EERIDAIDQFNEPNSDKFIFLLTTRAGGLGINLVT-ADTVVLYDSDWNPQA-----DLQA 541

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V+VY  + +N I+E V++R   K  +  L++ 
Sbjct: 542 MDRAHRIGQKKQVYVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 585


>gi|296814920|ref|XP_002847797.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
 gi|238840822|gb|EEQ30484.1| DNA repair and recombination protein RAD54 [Arthroderma otae CBS
           113480]
          Length = 819

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                E K W       +  +
Sbjct: 521 LKAIGILKKLCNHPDLLKLSEDLPGCEKYFPEDMASSNGRRGDREVKSWYSGKMMVLDRM 580

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   ++                 + K    +  +N+   
Sbjct: 581 LARIRQDTNDKIVLISNYTQTLDLFERLCRSRGYGCIRLDGTMGVKKRSKLVDRFNDPNG 640

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G  +  FV
Sbjct: 641 EEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPAADQ-----QALARVWRDGQSKDCFV 694

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  TI+E + QR   K ++   ++++ +
Sbjct: 695 YRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 726


>gi|330925332|ref|XP_003301007.1| hypothetical protein PTT_12406 [Pyrenophora teres f. teres 0-1]
 gi|311324570|gb|EFQ90879.1| hypothetical protein PTT_12406 [Pyrenophora teres f. teres 0-1]
          Length = 1935

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN-E 106
             + E  +    +V       L  +Q                  G    K    + ++N +
Sbjct: 1700 DLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGVEATKRQEIVNKFNTD 1759

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++     +   + R  + G K+ V 
Sbjct: 1760 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVN 1813

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  I   ++N
Sbjct: 1814 VYRIVTRGTLEEKILNLQRFKIDIASTVVN 1843


>gi|225436245|ref|XP_002275285.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2052

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 74/270 (27%)

Query: 1    MKQYHKF----QRELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYY- 42
            +K Y +F     R     +   N                 +        L+L    +   
Sbjct: 1713 LKLYEQFSGSHVRHEISSIVKRNESTDTGEGNSASPKASSHVFQALQYLLKLCGHPLLVV 1772

Query: 43   ---------------------DEEKHWKEVHDEKIKALEVIIEKA--------------- 66
                                    +  K  H  K+ AL  I+E+                
Sbjct: 1773 GEKIPDSLTTILSEFFPGTSDIMSELHKLHHSPKLIALHEILEECGIGVDASSSEGAVSV 1832

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWN-EGKIPLL 112
                +++     + L  +++                     +K    ++ +N +  I +L
Sbjct: 1833 GQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVL 1892

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL    + LVF    W+        +   + R  + G ++ V V+ LI 
Sbjct: 1893 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DHQAMDRAHRLGQRKVVNVHRLIM 1946

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + T++E V+   R K ++ + ++N+     
Sbjct: 1947 RGTLEEKVMSLQRFKLSVANSVINSENASM 1976


>gi|73946631|ref|XP_860127.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 14 [Canis familiaris]
          Length = 1554

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 38/227 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +   +      
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVRMDPKRSSE 1022

Query: 53   --------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                      K + L+ I+ K  A    +++     S +  ++  F              
Sbjct: 1023 EWLLLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTT 1082

Query: 93   TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +     ++++NE      +      + G GLNLQ   + +V F   W+  +     + 
Sbjct: 1083 KSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DL 1136

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1183


>gi|328716042|ref|XP_003245819.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
            [Acyrthosiphon pisum]
          Length = 2002

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            K Y       +  L      +  +  +  +   +  N    +                  
Sbjct: 982  KYYKYILTRNFEALNPRGGGQQVSLLNIMMDLKKCCNHPYLFPAAAQEAPTAINGSYEIG 1041

Query: 52   ------HDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                      + +  + I       +++       L              +      T +
Sbjct: 1042 GLTRAAGKLVLLSKMLRILHDTNHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGSITGN 1101

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1102 QRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1155

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1156 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1197


>gi|330803641|ref|XP_003289812.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
 gi|325080071|gb|EGC33642.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
          Length = 731

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 78/225 (34%), Gaps = 37/225 (16%)

Query: 3   QYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------------ 49
            Y           L        +S S      +L N      +    +            
Sbjct: 314 LYKSVLNSNSVQSLINGKESPASSLSTITLLKKLCNSPSLLQDTSDQELQSIFKQYSYNM 373

Query: 50  ---EVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
              E    K+  +E +I++       +++  ++   L   ++   +            + 
Sbjct: 374 ESMENEAGKLLFVESLIKQLKSVGEKLVLVSNYTQTLDVFERLCKKLSTDFLRLDGSVSS 433

Query: 95  DKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           D     + ++N+    K  +      + G G+NL  GGN LV +   W+       I+  
Sbjct: 434 DTRQSLVDKFNDQSNKKYQIFLLSAKAGGVGINL-IGGNHLVLYDPDWNPA-----IDIQ 487

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R  + G  + VF+Y L +  TI+E + QR   K +I + +++
Sbjct: 488 AMERVWREGQNKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVD 532


>gi|307172263|gb|EFN63768.1| Chromodomain-helicase-DNA-binding protein 7 [Camponotus floridanus]
          Length = 4304

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 72/233 (30%), Gaps = 41/233 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L      A   N  +  ++  +        +  +   ++        
Sbjct: 1928 KYYRGILERNFSFLAKGTTSANIPNLMNTMMELRKCCIHPFLLNGAEDQIQLDYKTGEKE 1987

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  ++ ++ K  A+   +++       L  L+      +   +  
Sbjct: 1988 DSEAYYHALVNSSGKMVLIDKLLPKLKASGHRVLIFSQMVKCLDLLEDYLLYKKYPYERI 2047

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ +   W+ +    
Sbjct: 2048 DGRIRGNLRQAAIDRYSKPDSDRFVFLLCTKAGGLGINLTA-ADTVIIYDSDWNPQN--- 2103

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G ++ V VY L+ +NT +  +  +   K  +   +L ++ 
Sbjct: 2104 --DLQAQARCHRIGQQKMVKVYRLLCRNTYEREMFDKASLKLGLDKAILQSMN 2154


>gi|296189845|ref|XP_002806533.1| PREDICTED: LOW QUALITY PROTEIN: probable global transcription
            activator SNF2L2-like [Callithrix jacchus]
          Length = 1589

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 976  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1035

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1036 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1095

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1096 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1151

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1152 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1200


>gi|241949239|ref|XP_002417342.1| chromatin remodelling complex ATPase chain ISW1, pseudogene,
           putative [Candida dubliniensis CD36]
 gi|223640680|emb|CAX44987.1| chromatin remodelling complex ATPase chain ISW1, pseudogene,
           putative [Candida dubliniensis CD36]
          Length = 1017

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEKH 47
            Q+ LY  +  ++I+A N             +  ++  +  N    +             
Sbjct: 374 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 433

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
               + +K+  L+ ++   +   + +++    +  L  L+                    
Sbjct: 434 HLVFNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHS 493

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 494 DRINAIDEYNKPGSEKFIFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAM 547

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +  I+E VL+R   K  +  L++   +
Sbjct: 548 DRAHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQQGR 593


>gi|222630170|gb|EEE62302.1| hypothetical protein OsJ_17090 [Oryza sativa Japonica Group]
          Length = 1087

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKA 58
           Y +        L           + +++  +  N    + E  +  +         K + 
Sbjct: 652 YEQVTSNGRVSLGSGLKSKA-LQNLSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFEL 710

Query: 59  LEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN- 105
           L+ ++ K       +++                               ++    + ++N 
Sbjct: 711 LDRLLPKLQRAGHRVLLFSQMTKLLDILEVYLQMYQFKYMRLDGSTKTEERGRLLADFNK 770

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  L      + G GLNLQ   + ++ F   W+ +     +++    R  + G K  
Sbjct: 771 KDSEYFLFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKNE 824

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +I+E +L R + K  I   ++ A
Sbjct: 825 VRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQA 857


>gi|42407269|dbj|BAD10851.1| lymphoid specific helicase variant8 [Homo sapiens]
 gi|119570412|gb|EAW50027.1| helicase, lymphoid-specific, isoform CRA_b [Homo sapiens]
          Length = 884

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 610 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 669

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 670 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 729

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 730 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 783

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 784 AKRKLEKLIIH 794


>gi|50549971|ref|XP_502458.1| YALI0D05775p [Yarrowia lipolytica]
 gi|49648326|emb|CAG80646.1| YALI0D05775p [Yarrowia lipolytica]
          Length = 990

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 80/227 (35%), Gaps = 39/227 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 336 DMQVQWYQKLLEKDIDAVNGQLGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 395

Query: 47  HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++  K+  + +++    +  L  L+                   
Sbjct: 396 EHLVFNCGKMVMLDKLLKRLKSQGSRVLIFSQMSRMLDILEDYCSFRDYEYSRIDGSTAH 455

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 456 EDRIAAIDEYNAEGSEKFVFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 509

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + R  + G  + V+V+  + +N ++E VL+R   K  +  L++   +
Sbjct: 510 MDRAHRIGQTKQVYVFRFVTENAVEEKVLERAAQKLRLDQLVIQQGR 556


>gi|302786826|ref|XP_002975184.1| hypothetical protein SELMODRAFT_450747 [Selaginella moellendorffii]
 gi|300157343|gb|EFJ23969.1| hypothetical protein SELMODRAFT_450747 [Selaginella moellendorffii]
          Length = 2063

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + LQ   G +          +   K +    +I       + +   F +           
Sbjct: 1079 RLLQFDCGKLQQL----SVLLRRLKSEGHRALIFTQMTKMLDILESFINLYGYNYMRLDG 1134

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1135 STKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1188

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    R  + G  R V +Y L++++TI+E +L++   K  + +L++ +
Sbjct: 1189 QQAQDRCHRIGQTREVHIYRLVSESTIEENILKKANQKRFLDNLVIQS 1236


>gi|225441419|ref|XP_002275336.1| PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
            1); ATP binding / DNA binding / helicase [Vitis vinifera]
          Length = 2049

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +     +    +   K +    +I       + V   F +           
Sbjct: 1041 RLIQFDCGKLQ----ELAVLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDG 1096

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI +      S G G+NL  G + ++F+   W+       ++
Sbjct: 1097 STQPEERQTLMQRFNTNPKIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1150

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1151 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1198


>gi|114631875|ref|XP_001151210.1| PREDICTED: helicase, lymphoid-specific isoform 9 [Pan troglodytes]
          Length = 884

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 610 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 669

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 670 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 729

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 730 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 783

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 784 AKRKLEKLIIH 794


>gi|313221625|emb|CBY36111.1| unnamed protein product [Oikopleura dioica]
          Length = 1267

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 25/210 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
           +K Y+ F      D++   +   +   +     ++ +                       
Sbjct: 354 LKIYNDFLSS--EDVRNALMTRASPLVQCTVLKKICDHPRRMANNAIKDIDLDLLLSESG 411

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQE 103
           K++ L  +++      I++       L               +   + +   +D    + 
Sbjct: 412 KMQVLADLVDAIIPEKILIFSQSIKILDIIAKILDDKTVNFIRMDGKDKLPIRDEKVKRF 471

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++ +I +          GL L      ++ +   W+        +   V R  + G  R
Sbjct: 472 QSDKRIKVFMLTTGVGAVGLTLTA-ATRVIVYDPDWNPGR-----DDQAVDRAYRIGQTR 525

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V V+ LI   TI+E +  R   K +I   
Sbjct: 526 PVVVFRLITCETIEEKIYSRQLFKKSIISQ 555


>gi|311248656|ref|XP_003123249.1| PREDICTED: LOW QUALITY PROTEIN: transcription activator BRG1 [Sus
            scrofa]
          Length = 1475

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|296090211|emb|CBI40030.3| unnamed protein product [Vitis vinifera]
          Length = 1884

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 74/270 (27%)

Query: 1    MKQYHKF----QRELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYY- 42
            +K Y +F     R     +   N                 +        L+L    +   
Sbjct: 1545 LKLYEQFSGSHVRHEISSIVKRNESTDTGEGNSASPKASSHVFQALQYLLKLCGHPLLVV 1604

Query: 43   ---------------------DEEKHWKEVHDEKIKALEVIIEKA--------------- 66
                                    +  K  H  K+ AL  I+E+                
Sbjct: 1605 GEKIPDSLTTILSEFFPGTSDIMSELHKLHHSPKLIALHEILEECGIGVDASSSEGAVSV 1664

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWN-EGKIPLL 112
                +++     + L  +++                     +K    ++ +N +  I +L
Sbjct: 1665 GQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVL 1724

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL    + LVF    W+        +   + R  + G ++ V V+ LI 
Sbjct: 1725 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DHQAMDRAHRLGQRKVVNVHRLIM 1778

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + T++E V+   R K ++ + ++N+     
Sbjct: 1779 RGTLEEKVMSLQRFKLSVANSVINSENASM 1808


>gi|156538236|ref|XP_001602268.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1536

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
             K+  L+ ++   K     +++       +  L++                +  D+    
Sbjct: 1058 GKLSVLDNLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGSSKISDRRDMV 1117

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                    I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1118 ADFQKRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1171

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1172 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1208


>gi|328722605|ref|XP_001946846.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Acyrthosiphon pisum]
          Length = 1670

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 74/220 (33%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           K Y+  ++       G    +    +  ++  +  N A+    +++              
Sbjct: 646 KNYNALRK-------GSKGSSTTFLNIMIELKKCCNHALLTKPQENENTADDNLQGLLRG 698

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++ +       +++       L  L +         +              
Sbjct: 699 SGKLMLLDKLLVRLRETGHRVLIFSQMVRMLDILAEYLSYRHLPFQRLDGSIKGDIRRQA 758

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N              + G G+NL    + ++ F   W+ +      +     R  +
Sbjct: 759 LEHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARAHR 812

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 813 IGQKNQVNIYRLVTKGSVEEDIVERAKQKMVLDHLVIQRM 852


>gi|307203835|gb|EFN82771.1| DNA repair and recombination protein RAD54-like [Harpegnathos
           saltator]
          Length = 679

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 42/228 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------- 45
              ++ +      +   + ++ +      +L N      ++                   
Sbjct: 364 DSIKKSMEDSDNSKKGGSLSALAAITLLKKLCNHPDLIYDKIKERSDGFENAARLLPANY 423

Query: 46  --KHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ---------- 90
             K        K+  L+ ++          I++  ++   L   +K   +          
Sbjct: 424 STKELLPDLSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCHKRGYNYVRLDG 483

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ K    +  +N       +      + G GLNL  G N LV F   W+        
Sbjct: 484 TMTIKKRSKVVDNFNSESSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN----- 537

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K+  FVY  ++  TI+E + QR   K  +   +++
Sbjct: 538 DDQAMARVWRDGQKKPCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 585


>gi|301761430|ref|XP_002916137.1| PREDICTED: lymphoid-specific helicase-like [Ailuropoda melanoleuca]
          Length = 837

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 62/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K    + ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLIFDTMLPELKARGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 623 MTRMLDILLDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|17539642|ref|NP_502082.1| Phasmid Socket Absent family member (psa-4) [Caenorhabditis elegans]
 gi|10312098|gb|AAG16655.1|AF230280_1 SWI2/SNF2-like protein [Caenorhabditis elegans]
 gi|3875463|emb|CAA92768.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|3879468|emb|CAA92978.1| C. elegans protein F01G4.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1474

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
             Y   Q+ L  D    +  A +  +  V   +L N    +   +     +          
Sbjct: 786  IYRHMQKGLLLD-AKMSSGARSLMNTVVHLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTD 844

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       I++ +   S +   +                   D+
Sbjct: 845  LMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDE 904

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + ++N     L        + G GLNLQ   + ++ F   W+  +           
Sbjct: 905  RGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 958

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 959  RAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1003


>gi|313217104|emb|CBY38281.1| unnamed protein product [Oikopleura dioica]
          Length = 1430

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 39/230 (16%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y       +  L          +  +  ++  +  N        +             
Sbjct: 681 KYYRAILERNFDFLSKGASTGNVPSLMNTMMELRKCCNHPFLIKGAEDKIIDEYRAKGEV 740

Query: 53  ----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--- 97
                       K+  +  ++ K       +++       L  L+    Q     +    
Sbjct: 741 ADPLTSIVQASGKMVLIHKLLPKLKAGGHKVLIFSQMIRVLDILEDYLYQMSMGFERLDG 800

Query: 98  -------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  + +      +      + G G+NL    + ++ F   W+ +      
Sbjct: 801 RIRGNDRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN----- 854

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +     R  + G K+ V +Y L+   T +  +  R   K  +   +L ++
Sbjct: 855 DLQAQARCHRIGQKKEVKIYRLLTSKTYEREMFDRASLKLGLDRAVLQSM 904


>gi|198466497|ref|XP_002135204.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
 gi|198150627|gb|EDY73831.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
          Length = 2036

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS +           +   +  N    +              
Sbjct: 988  AMQKKFYKFILTKNYEALNSKTGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGL 1047

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++ +  +    +++       L  L+      +   +     
Sbjct: 1048 YEINSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1107

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1108 ITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1161

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1162 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1207


>gi|156087380|ref|XP_001611097.1| snf2-related chromatin remodeling factor SRCAP [Babesia bovis T2Bo]
 gi|154798350|gb|EDO07529.1| snf2-related chromatin remodeling factor SRCAP [Babesia bovis]
          Length = 1675

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPCTIQEWN-EGKIPLLF 113
            K      ++   F+  L  L+      G T  +             +  +N   KI L  
Sbjct: 1373 KNEGHRCLLYTQFSKMLDILENWINLMGFTYIRLDGSTKVDMRQRIVTRFNENQKIFLFI 1432

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +   + G GL L  G + ++F+   W+       ++R  + R  + G  R V VY LI++
Sbjct: 1433 SSTRAGGVGLTLT-GADTVIFYDTDWNPA-----MDRQAMDRCHRIGQTREVNVYRLISE 1486

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
            +T++E + ++   K  + D++++
Sbjct: 1487 HTVEENIWRKQLQKRRLDDIVVD 1509


>gi|322817843|gb|EFZ25436.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 929

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 49/235 (20%)

Query: 6   KFQRELY-----CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           + QR+L        L G+   A    +       +    +                    
Sbjct: 444 RLQRQLLFRMTEQALNGDKANATRLQAHFTHQRIVCCHPLALRILGVEVRASAQAGWEER 503

Query: 52  ---------------HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF------ 88
                             K+  L+ ++ +   N    ++  +F S L  LQ         
Sbjct: 504 LASAGIELDEASIIAPSAKMIELDRMLREFKANGHRCLIFSNFTSILDLLQALCVLRGYG 563

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   +  +   ++  +N       +      + G G+ L  G + ++ F   ++ +
Sbjct: 564 FERIDGSTSRVERELSMIRFNAPGSACFVFLLTTTAGGVGVTLT-GADTVILFDAHYNPQ 622

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                I+R    R  + G  R V VY L  +NTI+E +      K+++ D +++ 
Sbjct: 623 -----IDRQAADRAHRIGQTRVVRVYRLCLKNTIEERIHNVALRKASLGDFIVDG 672


>gi|24656962|ref|NP_726065.1| domino, isoform D [Drosophila melanogaster]
 gi|21645213|gb|AAM70870.1| domino, isoform D [Drosophila melanogaster]
          Length = 3183

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 1636 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 1695

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1696 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 1754

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1755 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|328354642|emb|CCA41039.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 5 [Pichia pastoris CBS
           7435]
          Length = 1012

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 78/225 (34%), Gaps = 31/225 (13%)

Query: 1   MKQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWK 49
           +K Y     +    +    G+        +  ++  +  N    ++  +           
Sbjct: 367 IKLYRNLLEKDIDAVNCGFGKREGKTRLLNIVMQLRKCCNHPYLFEGVEPGPPFTTDEHL 426

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
             +  K+  L+ ++   K   + +++    +  L  L+                   +  
Sbjct: 427 VYNSAKMIVLDKLLKKMKEQGSRVLIFSQMSRLLDILEDYCFFREYEYCRIDGSTAHEDR 486

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I E+N+      +      + G G+NL    +I+V +   W+ +      +   + R
Sbjct: 487 INAIDEYNKPDSKKFIFLLTTRAGGLGINLTS-ADIVVLYDSDWNPQA-----DLQAMDR 540

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G K+ V V+  + +N I+E VL+R   K  +  L++   + 
Sbjct: 541 AHRIGQKKQVQVFRFVTENAIEEKVLERAAQKLRLDQLVIQQGRA 585


>gi|209882325|ref|XP_002142599.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209558205|gb|EEA08250.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1866

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 34/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEK-------------HW 48
             Y       Y +L         S     ++  ++ N        +             H 
Sbjct: 799  LYKSILTRNYEELSKTTGGTKTSLQNICMELKKVCNHPFLIHRPEVDSSQGITPATIQHQ 858

Query: 49   KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                  K+  L+ ++   K     +++       L  + +         +          
Sbjct: 859  LIYGCGKLCLLDKLLSRLKEKGNRVLIFSQMVRMLNIISEFLILRGFRHQRLDGTMGKEL 918

Query: 98   -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G G+NL    + ++ +   W+ +      +     
Sbjct: 919  RKKAMDHFNSPNSDDFCFLLSTKAGGLGINLTT-ADTVIIYDSDWNPQN-----DLQAEA 972

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V +Y L+ +++I+E +L+R +TK  +  L++  L 
Sbjct: 973  RAHRIGQTKQVQIYRLVTKDSIEENILERAKTKMVLDTLVVQGLN 1017


>gi|146413212|ref|XP_001482577.1| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 42/215 (19%)

Query: 26  ASKTVKCLQLANGAVY-----------------------YDEEKHWKEVHDEKIKALEVI 62
                   +L                               E + W       ++     
Sbjct: 524 LKAIGMLKKLCTHPELLRLPEEVLGSEDILPDDYESSGRDKEIRTWYSGKFAMLERFLHQ 583

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP-- 110
           I       I++  ++   L  +++                 ++K    +  +N+ +    
Sbjct: 584 IRTETDDKIVLISNYTQTLDLIERMCRYKRYQCCRLDGTMNINKRQKLVDRFNDPEGQEF 643

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N L+     W+    Q       + R  + G K+  F+Y  
Sbjct: 644 IFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQ-----QALARVWRDGQKKDCFIYRF 697

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           I   TI+E + QR   K ++   +++  K++   +
Sbjct: 698 ILTGTIEEKIFQRQSMKLSLSSCVVDE-KEDVDRL 731


>gi|327308794|ref|XP_003239088.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
 gi|326459344|gb|EGD84797.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
           118892]
          Length = 808

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           ++NG     E K W       +  +   I +     I++  ++   L   ++        
Sbjct: 545 VSNGRRGDREAKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYG 604

Query: 91  ------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + K    + ++N+      +      + G G+NL  G N LV F   W+  
Sbjct: 605 CIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPA 663

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q       + R  + G  +  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 664 ADQ-----QALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVIDSAE 715


>gi|312381365|gb|EFR27128.1| hypothetical protein AND_06360 [Anopheles darlingi]
          Length = 2541

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 11/185 (5%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
             L    I A ++     + +Q   G +   +      +   K     V+I       + V
Sbjct: 1582 KLLHPIISAMSTQFPDPRLIQYDCGKLQTLDR----LLKKLKSGGHRVLIFTQMTRMLDV 1637

Query: 74   AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNIL 132
               F +    +         +++    ++ +N  + + +      S G G+NL  G + +
Sbjct: 1638 LEAFLNFHGHIYLRLDGTTKVEQRQVLMERFNNDRRMFVFILSTRSGGVGINLT-GADTV 1696

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +F+   W+       ++     R  + G  R V +Y L+++ TI+E +L++   K  + D
Sbjct: 1697 IFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEENILKKANQKRILGD 1751

Query: 193  LLLNA 197
            L +  
Sbjct: 1752 LAIEG 1756


>gi|301623501|ref|XP_002941055.1| PREDICTED: probable global transcription activator SNF2L2 [Xenopus
            (Silurana) tropicalis]
          Length = 1559

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 964  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPFIFQHIEESFAEHLGFT 1023

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1024 HRIIQVPDLYRTSGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1083

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE   P  +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1084 DGTTKSEDRASLLKRFNEEGSPFFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1139

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1140 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1188


>gi|157821521|ref|NP_001101267.1| chromodomain-helicase-DNA-binding protein 6 [Rattus norvegicus]
 gi|149043033|gb|EDL96607.1| chromodomain helicase DNA binding protein 6 (predicted) [Rattus
           norvegicus]
          Length = 2698

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 708 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 767

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 768 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 827

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 828 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 884

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 885 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|17562600|ref|NP_504523.1| LEThal family member (let-418) [Caenorhabditis elegans]
 gi|3294508|gb|AAC25894.1| Lethal protein 418, confirmed by transcript evidence [Caenorhabditis
            elegans]
 gi|11095333|gb|AAG29838.1| LET-418 [Caenorhabditis elegans]
          Length = 1829

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  ++  +  N    +               E  
Sbjct: 860  KWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGT 919

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                +  K   L+ ++ K       +++       L  ++          +         
Sbjct: 920  ALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQ 979

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 980  MRQDAIDRYNAPGAQQFIFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1033

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G K  V +Y  + + +++E +    + K  +  L++ A
Sbjct: 1034 SRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRA 1077


>gi|242774780|ref|XP_002478510.1| SNF2 family helicase/ATPase PasG, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722129|gb|EED21547.1| SNF2 family helicase/ATPase PasG, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 895

 Score = 95.2 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKI 56
            + +R     L  + I +    +  ++     N    +                    K+
Sbjct: 596 EEIERAKTIKLAKKEIGSKKLQNPVMQARLACNSPHNFYWPWGDDSSTVDETLVTASGKM 655

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  +Q    Q           G +       I+ 
Sbjct: 656 LLLDRLVPCLMQKGHKILIFSQFKTQLDLIQDWATQLRGWNCCRIDGGVSQIDRRAQIKA 715

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 716 FNTDKNFKIFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 769

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 770 RPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 810


>gi|297738311|emb|CBI27512.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K + L  ++   K     +++   + S L  L+          +              
Sbjct: 552 SAKCRELAELLPTLKQGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTI 611

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N    I        + G GLNL  G + +V   + ++ +     I+R    R  + 
Sbjct: 612 VDTFNNDTSIFACLLSTRAGGQGLNLT-GADTVVIHDMDFNPQ-----IDRQAEDRCHRI 665

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V +Y L+ ++T+DE V +  + K  +   +L +
Sbjct: 666 GQTKPVTIYRLVTKDTVDENVYEIAKRKLILDAAVLES 703


>gi|119472846|ref|XP_001258430.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
 gi|119406582|gb|EAW16533.1| SNF2 family N-terminal domain protein [Neosartorya fischeri NRRL
           181]
          Length = 835

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 537 LKAIGILKKLCNHPDLLDLTRDLPGCEHTFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 596

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 597 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNINKRQKLVDKFNNPDG 656

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 657 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 710

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 711 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 742


>gi|302656074|ref|XP_003019794.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
 gi|291183564|gb|EFE39170.1| hypothetical protein TRV_06171 [Trichophyton verrucosum HKI 0517]
          Length = 881

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 75/208 (36%), Gaps = 27/208 (12%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIKALEVIIEK--AN 67
            + I +    +  ++   + N  + +                   K+  L+ ++    + 
Sbjct: 593 EKEISSKKLQNPVMQARLVCNSPLNFYWPWGEDSRVDSTLITSSGKMLLLDRLVPCLISK 652

Query: 68  AAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTIQEWNEGKIPLLFAH 115
              I++   F        D A   +++   R        D+        N+    +    
Sbjct: 653 GHKILIFSQFKGQLDILEDWATQLRSWNCCRIDGAIAQADRQEQINAFNNDPDYRIFLLS 712

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ ++     +     R  + G  + V VY L  + T
Sbjct: 713 TRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPVIVYRLATRGT 766

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETI 203
           I++ +L+R  +K  ++ L++   K +++
Sbjct: 767 IEQTLLERAGSKRRLEKLVIQKGKFKSL 794


>gi|256269545|gb|EEU04829.1| Sth1p [Saccharomyces cerevisiae JAY291]
          Length = 1359

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|145349184|ref|XP_001419020.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579250|gb|ABO97313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 956

 Score = 94.8 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 72/223 (32%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q+  Y  +  ++I+  NS        +  ++  +  N    +                
Sbjct: 332 EMQKTFYKRILQKDIDIVNSGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYITGDHLI 391

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
               K+  L+ ++       + +++       L  L+                       
Sbjct: 392 ESSGKLALLDKLLPRLMQRGSRVLIFSQMTRLLDILEDYLMYRNYQYCRIDGSTDGAVRE 451

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N+             + G G+NL    + ++ +   W+ +     ++   + R 
Sbjct: 452 DHIDAFNKEGSEKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPQ-----MDLQAMDRA 505

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+      +++E V+++   K  +  L++   +
Sbjct: 506 HRIGQKKEVQVFRFCTDGSVEEKVIEKAYKKLALDALVIQQGR 548


>gi|313231904|emb|CBY09016.1| unnamed protein product [Oikopleura dioica]
          Length = 1677

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 39/230 (16%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y       +  L          +  +  ++  +  N        +             
Sbjct: 621 KYYRAILERNFDFLSKGASTGNVPSLMNTMMELRKCCNHPFLIKGAEDKIIDEYRAKGEV 680

Query: 53  ----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--- 97
                       K+  +  ++ K       +++       L  L+    Q     +    
Sbjct: 681 ADPLTSIVQASGKMVLIHKLLPKLKAGGHKVLIFSQMIRVLDILEDYLYQMSMGFERLDG 740

Query: 98  -------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  + +      +      + G G+NL    + ++ F   W+ +      
Sbjct: 741 RIRGNDRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN----- 794

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +     R  + G K+ V +Y L+   T +  +  R   K  +   +L ++
Sbjct: 795 DLQAQARCHRIGQKKEVKIYRLLTSKTYEREMFDRASLKLGLDRAVLQSM 844


>gi|294658394|ref|XP_002770778.1| DEHA2F08470p [Debaryomyces hansenii CBS767]
 gi|202953094|emb|CAR66304.1| DEHA2F08470p [Debaryomyces hansenii]
          Length = 1923

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 75/264 (28%)

Query: 2    KQYHKFQR--------ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--- 50
            + Y  F +        E+  +         +         +L N         H K    
Sbjct: 1582 QLYKDFAKKQKSTVVDEVQSEGDEAKEGKTHVFQALQYMRKLCNHPALVLSPDHPKFAEV 1641

Query: 51   --------------VHDEKIKALEVIIEKA------------------------------ 66
                           H  K+ +L+ ++ +                               
Sbjct: 1642 STYLQSHKSDIRSIEHSPKLMSLKNLLLECGIGVNDNDYLSANYKQKQKQQQMITSEGVI 1701

Query: 67   NAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            +    ++       L                                ++++N +  I +L
Sbjct: 1702 SEHRALIFCQLKDMLDIVENELLKKYLPSVTYTRLDGSTDPRDRQSIVRKFNEDPSIDVL 1761

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI 
Sbjct: 1762 LLTTKVGGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLIT 1815

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +NT++E ++   + K  I   ++N
Sbjct: 1816 KNTLEEKIMGLQKFKMNIASTIVN 1839


>gi|49257014|dbj|BAD24805.1| lymphoid specific helicase variant10 [Homo sapiens]
          Length = 782

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 684 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 738 AKRKLEKLIIH 748


>gi|21914927|ref|NP_060533.2| lymphoid-specific helicase [Homo sapiens]
 gi|74761670|sp|Q9NRZ9|HELLS_HUMAN RecName: Full=Lymphoid-specific helicase; AltName:
           Full=Proliferation-associated SNF2-like protein;
           AltName: Full=SWI/SNF2-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 6
 gi|8980660|gb|AAF82262.1| proliferation-associated SNF2-like protein [Homo sapiens]
 gi|17384047|emb|CAD13191.1| helicase, lymphoid-specific [Homo sapiens]
 gi|119570420|gb|EAW50035.1| helicase, lymphoid-specific, isoform CRA_j [Homo sapiens]
 gi|148922411|gb|AAI46309.1| Helicase, lymphoid-specific [synthetic construct]
 gi|189069422|dbj|BAG37088.1| unnamed protein product [Homo sapiens]
 gi|261857602|dbj|BAI45323.1| helicase, lymphoid-specific [synthetic construct]
          Length = 838

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 684 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 738 AKRKLEKLIIH 748


>gi|58261190|ref|XP_568005.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134115795|ref|XP_773611.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74682377|sp|Q5K8T2|SWR1_CRYNE RecName: Full=Helicase SWR1
 gi|50256237|gb|EAL18964.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57230087|gb|AAW46488.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1246

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K++ L  ++   K+    +++       L  L+                        
Sbjct: 936  DCGKLQKLFEMLRDLKSEGHRVLIFTQMTRVLDILEMFLSHNGHRYLRLDGSTKIEDRQV 995

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              + +N + +I +  A   S G G+NL  G + + F+   W+       ++R  + R  +
Sbjct: 996  LTERFNSDSRIFVFIASSRSGGVGINLT-GADTVFFYDSDWNPS-----MDRQCMDRAHR 1049

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V +Y  ++ +T++E +L++   K  +  +++  
Sbjct: 1050 IGQTREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQE 1088


>gi|238814383|ref|NP_001154953.1| RAD54-like [Nasonia vitripennis]
          Length = 749

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 47/231 (20%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------- 45
              Q +     +  ++ A ++ +   K     N      E+                   
Sbjct: 438 KSMQDDGTA--KKGSLSALSAITLLKKL---CNHPDLVYEKIQENSDGFEGAAKLLPANY 492

Query: 46  --KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAF----------PQ 90
             K        K+  L+ ++   +      I++  ++   L   ++              
Sbjct: 493 STKEVMPELSGKLMVLDCLLAFIKSTTTDKIVLVSNYTQTLDLFERLCAKRKYKYVRLDG 552

Query: 91  GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++ K    +  +N       +      + G GLNL  G N LV F   W+        
Sbjct: 553 TMSIKKRAKVVDNFNNPDSGDFIFMLSSKAGGCGLNL-VGANRLVMFDPDWNPAN----- 606

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +   + R  + G K+  FVY  +   TI+E + QR   K  +   +++  +
Sbjct: 607 DDQAMARVWRDGQKKPCFVYRFLCTGTIEEKIFQRQAHKKALSSTVVDQDE 657


>gi|71649758|ref|XP_813592.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70878490|gb|EAN91741.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 929

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 49/235 (20%)

Query: 6   KFQRELY-----CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           + QR+L        L G+   A    +       +    +                    
Sbjct: 444 RLQRQLLFRMTEQALNGDKANATRLQAHFTHQRIVCCHPLALRILGVEVRASAQAGWEER 503

Query: 52  ---------------HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF------ 88
                             K+  L+ ++ +   N    ++  +F S L  LQ         
Sbjct: 504 LASAGIELDEASIIAPSAKMIELDRMLREFKANGHRCLIFSNFTSILDLLQALCVLRGYG 563

Query: 89  ----PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      +   ++  +N       +      + G G+ L  G + ++ F   ++ +
Sbjct: 564 FERIDGSTPRVERELSMIRFNAPGSACFVFLLTTTAGGVGVTLT-GADTVILFDAHYNPQ 622

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                I+R    R  + G  R V V+ L  +NTI+E +      K+++ D +++ 
Sbjct: 623 -----IDRQAADRAHRIGQTRVVRVHRLCLKNTIEERIHDVALRKASLGDFIVDG 672


>gi|328867774|gb|EGG16155.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 2377

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
            +I       I +   F                L+     + ++  +  I +      +CG
Sbjct: 2034 LIYCQMTKMINILEDFVIFRKYKYLRLDGSSKLEDRRDLVDDFQSDQSIFVFLLSTRACG 2093

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL    + ++FF   W+       ++   + R  + G +R V VY L+ + T++E V
Sbjct: 2094 IGINLTA-ADTVIFFDSDWNPT-----MDEQAMDRCHRLGQQRPVTVYRLVTKGTVEERV 2147

Query: 181  LQRLRTKSTIQDLLLNALKKE 201
            ++R + K  IQ +++   K E
Sbjct: 2148 IKRAKQKHQIQSIVIAGGKFE 2168


>gi|254583686|ref|XP_002497411.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
 gi|238940304|emb|CAR28478.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
          Length = 848

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 43/224 (19%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------DEKI 56
           + +             +L N     D  +  + +                        K 
Sbjct: 548 KGVGGTQPLKAIGLLKKLCNHPDLVDFNEEIENLDEISIPDDYEWNSKRKDLQVKYSSKF 607

Query: 57  KALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
             LE  +      +   I++  ++   L  ++K   Q             ++K    +  
Sbjct: 608 SILERFLAKIRSESDDKIVIISNYTQTLDLIEKLCRQKRYGSVRLDGTMGINKRQKLVDR 667

Query: 104 WNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+ +    +      + G G+NL  G N L+     W+    Q       + R  + G 
Sbjct: 668 FNDPEGQEFVFLLSSKAGGCGINL-IGANRLILLDPDWNPAADQ-----QALARVWRDGQ 721

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           K+  F+Y  I+  +I+E + QR   K ++   +++A K++   +
Sbjct: 722 KKDCFIYRFISTGSIEEKIYQRQSMKLSLSSCVVDA-KEDVERL 764


>gi|312071855|ref|XP_003138800.1| hypothetical protein LOAG_03215 [Loa loa]
 gi|307766034|gb|EFO25268.1| hypothetical protein LOAG_03215 [Loa loa]
          Length = 1112

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 34/199 (17%)

Query: 25  SASKTVKCLQLANGAVYY---------------DEEKHWKEVHDEKIKALEVII--EKAN 67
           +    +   +L N                    +E          K++ L+ ++   K  
Sbjct: 539 AFVGLITLRKLCNHPDLITGGPNKFNDYSVTAENEMDFGAPCRSGKMQVLKALLKLWKQQ 598

Query: 68  AAPIIVAYHFNSDLAR---------LQKAFPQGRTLDK-DPCTIQEWNE-GKIPLLFAHP 116
              +++       L            +     G T  +     ++++N+  +I +     
Sbjct: 599 DQKVLLFSQSRQMLTILEKFVIQEGYEYLRMDGTTPVRSRQLLVEKFNKVDEIFIFLLTT 658

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G G+NL  G N +V F   W+        +     R  + G +RAV +Y L+   TI
Sbjct: 659 RVGGLGINLT-GANRVVIFDPDWNPST-----DIQARERAWRIGQERAVTIYRLLTGGTI 712

Query: 177 DELVLQRLRTKSTIQDLLL 195
           +E +  R   K  + + +L
Sbjct: 713 EEKIYHRQIFKVFLSNRIL 731


>gi|114631879|ref|XP_001151268.1| PREDICTED: helicase, lymphoid-specific isoform 10 [Pan troglodytes]
          Length = 838

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 684 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 738 AKRKLEKLIIH 748


>gi|62087266|dbj|BAD92080.1| BTAF1 RNA polymerase II, B-TFIID transcription factor-associated,
           170kDa variant [Homo sapiens]
          Length = 699

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
           ++ Y  F +        E + +                +         +L N        
Sbjct: 379 VQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 438

Query: 46  KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
           +H +                   H  K+ AL+ ++                       I+
Sbjct: 439 QHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 498

Query: 73  VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +     S L  ++                       +    +  +N +  I +L      
Sbjct: 499 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 558

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 559 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 612

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I + +++
Sbjct: 613 KIMGLQKFKMNIANTVIS 630


>gi|14090511|gb|AAK53539.1| DOMINO B [Drosophila melanogaster]
          Length = 2497

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 69/184 (37%), Gaps = 19/184 (10%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
            +K      + +       +    +    K++ ++ ++ +   N   +++       L  L
Sbjct: 1631 AKLALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVL 1690

Query: 85   QKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +        +           +    ++ +N + +I        S G G+NL  G + ++
Sbjct: 1691 EAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVI 1749

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+
Sbjct: 1750 FYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDM 1804

Query: 194  LLNA 197
             +  
Sbjct: 1805 AIEG 1808


>gi|26333481|dbj|BAC30458.1| unnamed protein product [Mus musculus]
          Length = 278

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 71/202 (35%), Gaps = 28/202 (13%)

Query: 20  IEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKALEVIIEK--ANAA 69
           ++     +  ++  +  N    +                 +  K+  L+ ++ K     +
Sbjct: 1   MDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGS 60

Query: 70  PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKI--PLLFAHPA 117
            +++       L  L+                   D+   +I  +NE      +      
Sbjct: 61  RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTR 120

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    ++++ +   W+ +     ++   + R  + G  + V V+  I  NT++
Sbjct: 121 AGGLGINL-ATADVVILYDSDWNPQ-----VDLQAMDRAHRIGQTKTVRVFRFITDNTVE 174

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E +++R   K  +  +++   +
Sbjct: 175 ERIVERAEMKLRLDSIVIQQGR 196


>gi|324500109|gb|ADY40062.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
          Length = 1095

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 79/222 (35%), Gaps = 31/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y +L      + N      ++  +  N A       H++E          
Sbjct: 745 QYYKWILTKNYKELSKGVKGSINGFVNLIMELKKCCNHASLVRAYDHYEENAQARLQQLM 804

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ + +     +++       L  +Q+     R   +            
Sbjct: 805 KSSGKLILLDKLLCRLHETGHRVLIFSQMVMMLDIVQEYLQLRRFPSQRLDGSMRADLRK 864

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +   ++R 
Sbjct: 865 AALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRA 918

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 919 HRIGQKKQVNIYRLVTKASVEEEIVERAKRKLVLDHLVIQRM 960


>gi|242094948|ref|XP_002437964.1| hypothetical protein SORBIDRAFT_10g005630 [Sorghum bicolor]
 gi|241916187|gb|EER89331.1| hypothetical protein SORBIDRAFT_10g005630 [Sorghum bicolor]
          Length = 1147

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 73/223 (32%), Gaps = 30/223 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG----------AVYYDEEKHWKEV 51
           + Y     + Y  L   N    +  +  ++  +L                 +E       
Sbjct: 364 EYYKAILTKNYEVLARRNGGHTSLINVVMELRKLCCHGFMIDEPDFEPANPEEGLRRLLD 423

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPC 99
              K++ L+ ++ K       +++   F   L              +      +  +   
Sbjct: 424 SSGKMQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKISGAERQI 483

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 484 RIDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 537

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K
Sbjct: 538 RLGQTSKVMIYRLVSRGTIEERMMQLTKKKILLEHLVVGRLTK 580


>gi|194041750|ref|XP_001929005.1| PREDICTED: lymphoid-specific helicase [Sus scrofa]
          Length = 837

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 623 MTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|308198272|ref|XP_001386950.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Scheffersomyces stipitis CBS 6054]
 gi|149388940|gb|EAZ62927.2| protein required for X-ray damage repair, mitotic recombination,
           and full meiotic recombination. mRNA increases in
           meiosis [Pichia stipitis CBS 6054]
          Length = 821

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 74/219 (33%), Gaps = 46/219 (21%)

Query: 26  ASKTVKCLQLANGAVYYD------------------------EEKHWKEVHDEKIKALEV 61
                   +L N     +                          +  +  +  K   LE 
Sbjct: 527 LKAIGMLKKLCNHPDLLNLPDDFEGSEKFIPEDYCSSIGSGGRNREVQSWYSGKFMILER 586

Query: 62  IIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK 108
            + +        I++  ++   L  +++     +          +++K    + ++N+ +
Sbjct: 587 FLYQIRSQTNDKIVLISNYTQTLDLIERMCRHKKYGSLRLDGTLSINKRQKLVDKFNDPE 646

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL  G N L+     W+    Q       + R  + G K+  F
Sbjct: 647 GNEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAADQ-----QALARVWRDGQKKDCF 700

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           +Y  I+  TI+E + QR   K ++   +++  K++   +
Sbjct: 701 IYRFISTGTIEEKIFQRQSMKMSLSSCVVDE-KEDVERL 738


>gi|149944717|ref|NP_001092585.1| probable global transcription activator SNF2L2 [Bos taurus]
 gi|148745424|gb|AAI42522.1| SMARCA2 protein [Bos taurus]
 gi|296484787|gb|DAA26902.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a2 [Bos taurus]
          Length = 1554

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 959  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1018

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1019 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1078

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1079 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1134

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1135 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1183


>gi|296220822|ref|XP_002756499.1| PREDICTED: lymphoid-specific helicase isoform 1 [Callithrix
           jacchus]
          Length = 837

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 623 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|73946659|ref|XP_860605.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 27 [Canis familiaris]
          Length = 1540

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 945  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1004

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1005 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1064

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1065 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1120

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1121 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1169


>gi|312376441|gb|EFR23522.1| hypothetical protein AND_12719 [Anopheles darlingi]
          Length = 875

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 42/235 (17%)

Query: 6   KFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH---------------- 47
           +  R      + E     A           ++ N                          
Sbjct: 516 QLLRTALTFYEEERSGSNAITPLQLITILKKICNHPSLVKVTGRGDPESLLHRLADQLPD 575

Query: 48  ---WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                     K+  ++ ++E        +++  ++N  L  +                  
Sbjct: 576 WQAMGPSDSAKLAIVDTLLEDLIVKQEKVVIVSYYNKTLDMIAGLCEHYNYKHSRLDGST 635

Query: 96  ---KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +  +N     I +L     + G GLNL  G + LV +   W+        + 
Sbjct: 636 VASDRSKIVATFNNAASDIFILLLSAKAGGAGLNL-IGASRLVLYDNDWNPAN-----DL 689

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             ++R  + G  R VF+Y L+   +I+E + QR  +K+++   +++  K+   ++
Sbjct: 690 QAMSRVWRDGQTRTVFIYRLLTAFSIEERIFQRQISKTSLSGTVVDQ-KRNMNNL 743


>gi|167535979|ref|XP_001749662.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771810|gb|EDQ85471.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1288

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 46/216 (21%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE--------------------V 61
           A +  +  ++  +L      + E +  +++  E ++  +                     
Sbjct: 740 ARSLQNVVMQMRKLCCHPFLFKEVE--QDLKSELLRHEDAATALANLNGLELWRTAGKLE 797

Query: 62  IIEKA------NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +++            I++   F + L                        K    + ++N
Sbjct: 798 LLDHMIPKLRRFGHRILLFSQFTTMLDILEDYFRYRRLKYCRMDGTCGAAKRAELLHDFN 857

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G GLNLQ   + +V F   W+  +     +     R  + G  +
Sbjct: 858 APDSDLEIFILSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ-----DLQAQDRAHRIGQTK 911

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V+ L+   +++E +L+R R K  +   ++ A K
Sbjct: 912 EVRVFRLVTVQSVEERMLERAREKLDVDQQVIQAGK 947


>gi|321460021|gb|EFX71068.1| hypothetical protein DAPPUDRAFT_309233 [Daphnia pulex]
          Length = 1322

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 44   EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             +K        K++ L+ ++   K+    +++       +  L++               
Sbjct: 1116 PDKETLICDAGKLQVLDALLRRLKSEGHRVLIYSQMTRIIDLLEEYMWHRKWTYMRLDGS 1175

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D+            I +      + G G+NL    + ++F+   W+    QQ ++R
Sbjct: 1176 SKISDRRDMVADFQTRSDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPTVDQQAMDR 1234

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q +   +  V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1235 AHRLGQTKQAREHIVTVYRLICKGTIEERILQRAREKSKIQKIVISG 1281


>gi|254584336|ref|XP_002497736.1| ZYRO0F12320p [Zygosaccharomyces rouxii]
 gi|238940629|emb|CAR28803.1| ZYRO0F12320p [Zygosaccharomyces rouxii]
          Length = 983

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
           + Q   Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 305 EMQVHWYKSLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 364

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                +  K+  L+ ++   K   + +++             +                 
Sbjct: 365 EHLVYNAGKMIVLDKLLKKMKEKGSRVLIFSQMSRLLDILEDYCYFRDYEYCRIDGSTAH 424

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N+      +      + G G+NL    + +V +   W+ +      +   
Sbjct: 425 EDRIEAIDEFNKPDSDKFVFLLTTRAGGLGINLVT-ADTVVLYDSDWNPQA-----DLQA 478

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY  + ++ I+E V++R   K  +  L++ 
Sbjct: 479 MDRAHRIGQKKQVHVYRFVTESAIEEKVIERAAQKLRLDQLVIQ 522


>gi|109090016|ref|XP_001095267.1| PREDICTED: lymphoid-specific helicase isoform 9 [Macaca mulatta]
          Length = 707

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 433 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 492

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 493 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 552

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 553 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 606

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 607 AKRKLEKLIIH 617


>gi|172764|gb|AAA35120.1| STH1 protein [Saccharomyces cerevisiae]
          Length = 1352

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|73946663|ref|XP_860667.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 29 [Canis familiaris]
          Length = 1547

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 952  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1011

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1012 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1071

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1072 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1127

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1128 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|154338237|ref|XP_001565343.1| DNA repair and recombination protein RAD54 [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134062392|emb|CAM42253.1| putative DNA repair and recombination protein RAD54 [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 1126

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           + + E      +++  +F   L  +                   + K    +  +N    
Sbjct: 802 DELRENGEHDKLVIVSNFTQTLDIIAALCNSKRIAYFQLDGSTPIKKRQQLVDYFNVPDS 861

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N L+ F   W+        +   + R  + G K+ VF+
Sbjct: 862 QEVVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKKRVFI 915

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L++  TI+E + QR  +K  +   +++
Sbjct: 916 YRLLSTGTIEEKIYQRQVSKQGLSANVVD 944


>gi|88603125|ref|YP_503303.1| SNF2-like protein [Methanospirillum hungatei JF-1]
 gi|88188587|gb|ABD41584.1| SNF2-related protein [Methanospirillum hungatei JF-1]
          Length = 886

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 22/209 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   L+     A          +  Q+ N    +  ++        K+  L 
Sbjct: 652 LYQAVVEDMAQSLETVTGLARRGVIFRAITRLKQICNHPGLFIHDRGVLPERSGKVSRLL 711

Query: 61  VIIEK--ANAAPIIVAYH---FNSDLARLQKAFP---------QGRTLDKDPCTIQEWNE 106
            ++E+        ++      F   LAR+ +            +    +++    +  + 
Sbjct: 712 EMLEEVSEEGDSALIFTQYATFAEYLARILEERFLIPVFLLTGKTSRRERERLVREFQSS 771

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +         + G GLNL      +     WW+       +E     R  + G K+ V 
Sbjct: 772 KEPSFFVISLKAGGTGLNLTA-ATHVFHVDRWWNPA-----VEDQATDRTYRIGQKQNVQ 825

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V+ +IA  T++E + +    K  +   +L
Sbjct: 826 VHLMIAAGTLEEQIDRINAEKRILGREVL 854


>gi|20988306|gb|AAH29930.1| BTAF1 protein [Homo sapiens]
          Length = 680

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
           ++ Y  F +        E + +                +         +L N        
Sbjct: 360 VQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 419

Query: 46  KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
           +H +                   H  K+ AL+ ++                       I+
Sbjct: 420 QHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 479

Query: 73  VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +     S L  ++                       +    +  +N +  I +L      
Sbjct: 480 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 539

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 540 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 593

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I + +++
Sbjct: 594 KIMGLQKFKMNIANTVIS 611


>gi|73946671|ref|XP_850159.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform a
            isoform 2 [Canis familiaris]
          Length = 1574

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1020

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1021 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1080

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1081 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1136

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|6322065|ref|NP_012140.1| Sth1p [Saccharomyces cerevisiae S288c]
 gi|417373|sp|P32597|STH1_YEAST RecName: Full=Nuclear protein STH1/NPS1; AltName:
           Full=ATP-dependent helicase STH1; AltName:
           Full=Chromatin structure-remodeling complex protein
           STH1; AltName: Full=SNF2 homolog
 gi|218449|dbj|BAA01446.1| nuclear protein [Saccharomyces cerevisiae]
 gi|599991|emb|CAA86866.1| nuclear protein [Saccharomyces cerevisiae]
 gi|285812528|tpg|DAA08427.1| TPA: Sth1p [Saccharomyces cerevisiae S288c]
          Length = 1359

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|158293462|ref|XP_314800.4| AGAP008698-PA [Anopheles gambiae str. PEST]
 gi|157016718|gb|EAA10171.4| AGAP008698-PA [Anopheles gambiae str. PEST]
          Length = 2083

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 70/223 (31%), Gaps = 39/223 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
            K +   ++       G         +  ++  +  N A      +   +           
Sbjct: 857  KNFDALRK-------GMKGSVGTFLNIVIELKKCCNHAALTRPIEFETQRNSQQDVVQQL 909

Query: 51   -VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------D 97
                 K+  L+ ++   K     +++       L  L +   +     +           
Sbjct: 910  LKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELR 969

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N              + G G+NL    + ++ F   W+ +      +     R
Sbjct: 970  KQALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQAR 1023

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+  ++++E +++R + K  +  L++  +
Sbjct: 1024 AHRIGQKNQVNIYRLVTAHSVEENIVERAKQKMVLDHLVIQRM 1066


>gi|125538184|gb|EAY84579.1| hypothetical protein OsI_05951 [Oryza sativa Indica Group]
          Length = 936

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 85/261 (32%), Gaps = 67/261 (25%)

Query: 1   MKQYHKF-----QRELYCDLQGENIEAF--------NSASKTVKCLQLANGAVYYDEEKH 47
           +K Y KF     ++E+   ++   ++          +        L+L +  +    E  
Sbjct: 604 LKLYDKFSNSNAKQEISTIVKENELDQSTSQPKATRHVFQALQYLLKLCSHPLLVTGESP 663

Query: 48  WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
              +                   H  K+ AL+ I+++                    +++
Sbjct: 664 PDYLVDLLKEIGMGTGDELHDLHHSPKLVALQEILQECGIGSEISSPDASAAIGQHRVLI 723

Query: 74  AYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
                                +            +K    ++ +N +  I +L       
Sbjct: 724 FAQHKALLDIIEKDLFQSHMRSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVG 783

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 784 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 837

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           V+   R K ++ + ++NA   
Sbjct: 838 VMSLQRFKVSVANAVINAENA 858


>gi|221504382|gb|EEE30057.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
           VEG]
          Length = 1139

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 80/213 (37%), Gaps = 24/213 (11%)

Query: 3   QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKA 58
            Y + Q +    +    ++      +  ++  ++AN    + +E    E       K + 
Sbjct: 464 VYKQIQEKGLRTVDQVGHVTKRGFQNTLMQLRKIANHPYLFVDEYLVNEDLVRVAGKFEC 523

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
           L+ ++ K       +++       L  + +                   +    ++E+N 
Sbjct: 524 LDRMLPKLLHFKHKVLIFSQMTQVLDLMAEYMHLRGYKYARLDGSVGLTERKERMEEFNN 583

Query: 107 GKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            ++   +      + G GLNLQ   + +V F   ++  +     +   + R  + G  + 
Sbjct: 584 AEVDTMIFMLSTRAGGLGLNLQA-ADTVVLFDSDFNPHQ-----DLQAMCRAHRLGQTKQ 637

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L+  + ++E++L++   K  I  +++ A
Sbjct: 638 VKVFRLVTISGVEEIILEKANRKLNIDQMVIQA 670


>gi|71064092|gb|AAZ22501.1| Sth1p [Saccharomyces cerevisiae]
          Length = 1359

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|24656966|ref|NP_524833.2| domino, isoform A [Drosophila melanogaster]
 gi|160380691|sp|Q9NDJ2|DOM_DROME RecName: Full=Helicase domino
 gi|21645214|gb|AAM70871.1| domino, isoform A [Drosophila melanogaster]
          Length = 3198

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 1636 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 1695

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1696 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 1754

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1755 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|317142811|ref|XP_001819108.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1137

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                ++  + +   KI+ L  I+  +++    IV   F S L +++    +         
Sbjct: 885  LNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFARYD 944

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 945  GGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 998

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 999  EEQAIDRVHRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1047



 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 4   YHKFQRE----LYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + ++     L   + G  ++   +    ++  Q  N     
Sbjct: 644 YKRLEQRTDNSLEKMMGGSKLDYAGALVLLLRLRQSCNHPDLV 686


>gi|312071167|ref|XP_003138483.1| hypothetical protein LOAG_02898 [Loa loa]
 gi|307766356|gb|EFO25590.1| hypothetical protein LOAG_02898 [Loa loa]
          Length = 755

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 51/238 (21%)

Query: 2   KQYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------- 45
           K Y +         ++   +       A    S      +L N       +         
Sbjct: 411 KLYRQLISTFSMGGKQKVTEGDKITGTA---LSFITNLKKLCNHPQLIFNKCQKKEEGFE 467

Query: 46  -----------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDL---------- 81
                      + ++     K+K L+ ++           ++  ++   +          
Sbjct: 468 GCLKLFPGEFGRKFEPAFSGKMKVLDYLLAATRTTTNDKFVLVSNYTQTIDAFVELCQLR 527

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      T+ +    ++++N+ K    +      + G GLNL  G N L+ F   W
Sbjct: 528 RYPYIRLDGTCTIKQRAKLVEKFNDPKSVEYVFLLSSKAGGCGLNL-IGANRLIMFDPDW 586

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G ++  F+Y L+A  +I+E + QR   K  +   +++ 
Sbjct: 587 NPAN-----DDQAMARVWRDGQRKNCFIYRLLASGSIEEKMFQRQAHKKALSSCVIDE 639


>gi|238501732|ref|XP_002382100.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220692337|gb|EED48684.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1158

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                ++  + +   KI+ L  I+  +++    IV   F S L +++    +         
Sbjct: 906  LNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFARYD 965

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 966  GGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1019

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 1020 EEQAIDRVHRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1068



 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 4   YHKFQRE----LYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + ++     L   + G  ++   +    ++  Q  N     
Sbjct: 665 YKRLEQRTDNSLEKMMGGSKLDYAGALVLLLRLRQSCNHPDLV 707


>gi|25013136|gb|AAN71681.1| SD16865p [Drosophila melanogaster]
          Length = 673

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 78/252 (30%), Gaps = 58/252 (23%)

Query: 1   MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
           ++ Y  F     ++    L   +  +          +          + N       +  
Sbjct: 358 LRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE 417

Query: 48  WKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                               H  K+ AL+ ++            +    ++     + L 
Sbjct: 418 ELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 477

Query: 83  RLQKAFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
            +++   +                  +    +  +N +  I +L       G GLNL  G
Sbjct: 478 IVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLT-G 536

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 537 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 591

Query: 189 TIQDLLLNALKK 200
              + +++A   
Sbjct: 592 LTANTVVSAENA 603


>gi|83766966|dbj|BAE57106.1| unnamed protein product [Aspergillus oryzae]
          Length = 1157

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                ++  + +   KI+ L  I+  +++    IV   F S L +++    +         
Sbjct: 905  LNPGDEDNQVLPSTKIRHLMKILRRESSDYKFIVFSVFTSMLDKIEPFLQRAGIGFARYD 964

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 965  GGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1018

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y LI ++T++E ++     K  + ++ +  
Sbjct: 1019 EEQAIDRVHRLNQTVDVKIYKLIIKDTVEERIIDLQERKRELANVTIEG 1067



 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 4   YHKFQRE----LYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + ++     L   + G  ++   +    ++  Q  N     
Sbjct: 664 YKRLEQRTDNSLEKMMGGSKLDYAGALVLLLRLRQSCNHPDLV 706


>gi|190406337|gb|EDV09604.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Saccharomyces cerevisiae RM11-1a]
          Length = 1359

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|119570414|gb|EAW50029.1| helicase, lymphoid-specific, isoform CRA_d [Homo sapiens]
          Length = 700

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 426 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 485

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 486 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 545

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 546 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 599

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 600 AKRKLEKLIIH 610


>gi|157128256|ref|XP_001661368.1| hypothetical protein AaeL_AAEL002341 [Aedes aegypti]
 gi|108882255|gb|EAT46480.1| conserved hypothetical protein [Aedes aegypti]
          Length = 851

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 40/229 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           K      R      +  +   +          ++ N                        
Sbjct: 503 KLQETLLRTAIQFYEKSDRSTYFPLQLITVLKKICNHPSLIASTEKIDVGGSLIKLLNDN 562

Query: 42  ---YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN---------SDLARLQKAFP 89
              + +           + +L   + +     +IV+Y+                      
Sbjct: 563 LPPWQDMGPTDSGKLAVLDSLLETLIQRQEKAVIVSYYGKTLDMIMGLCEHYNYKYCRLD 622

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      +  +N       +      + G GLNL  G + L+ +   W+       
Sbjct: 623 GSTPSQDRCKIVSSFNSPSSDTFIFLLSAKAGGIGLNLT-GASRLILYDNDWNPAS---- 677

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   ++R  + G  R VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 678 -DLQAMSRIWRDGQTRNVFIYRLITAFSIEEKIYQRQISKTSLSGTVVD 725


>gi|255565952|ref|XP_002523964.1| TATA-binding protein-associated factor MOT1, putative [Ricinus
            communis]
 gi|223536691|gb|EEF38332.1| TATA-binding protein-associated factor MOT1, putative [Ricinus
            communis]
          Length = 1920

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 73/267 (27%)

Query: 1    MKQYHKF----QRELYCDLQGENIEA------------FNSASKTVKCLQLANGAVYYDE 44
            +K Y +F     ++    +   +  A             +        L+L +  +    
Sbjct: 1582 LKLYDQFSGSHVKQEISSMVKVDDSACREGNSASPKASSHVFQALQYLLKLCSHPLLVLG 1641

Query: 45   EKHWKEV----------------------HDEKIKALEVIIEKAN--------------- 67
            EK  + +                      H  K+ AL+ I+E+                 
Sbjct: 1642 EKMHESLASQLAGILPANSDIISELHKLHHSPKLVALQEILEECGIGVDISSSENAVNVG 1701

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWN-EGKIPLLF 113
               +++     + L  +++                     +K    ++ +N +  I  L 
Sbjct: 1702 QHRVLIFAQHKALLDIIERDLFHSHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALL 1761

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL    + LVF    W+        +   + R  + G K+ V V+ LI +
Sbjct: 1762 LTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DHQAMDRAHRLGQKKVVNVHRLIMR 1815

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
             T++E V+   + K ++ + ++NA   
Sbjct: 1816 GTLEEKVMSLQKFKVSVANAVINAENA 1842


>gi|195166785|ref|XP_002024215.1| GL22908 [Drosophila persimilis]
 gi|194107570|gb|EDW29613.1| GL22908 [Drosophila persimilis]
          Length = 1898

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS +           +   +  N    +              
Sbjct: 846  AMQKKFYKFILTKNYEALNSKTGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGL 905

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++ +  +    +++       L  L+      +   +     
Sbjct: 906  YEINSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 965

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 966  ITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1019

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1020 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1065


>gi|151943040|gb|EDN61375.1| SNF2-like protein [Saccharomyces cerevisiae YJM789]
          Length = 1359

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|121701385|ref|XP_001268957.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus clavatus
           NRRL 1]
 gi|119397100|gb|EAW07531.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus clavatus
           NRRL 1]
          Length = 892

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKI 56
            + +R     L  + I      +  ++     N    +                    K+
Sbjct: 593 EEIERANTIKLAKKEIAQKKLQNPVMQARLACNSPHNFYWPWGNEPAAIDETLVTASGKM 652

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  LQ    Q             +       I+ 
Sbjct: 653 LLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKA 712

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 713 FNSDSHFKIFLLSTRAGGQGINLVA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 766

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 767 RPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 807


>gi|312922352|ref|NP_001099924.2| transcription termination factor 2 [Rattus norvegicus]
          Length = 1142

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------------------------- 54
               +  S+ ++  Q              KE+  E                          
Sbjct: 892  STVHVLSQLLRLRQCCCHLSLLKSVLDPKELESEGLVLSLEEQLSALTLSKVDVSEPSPT 951

Query: 55   --------KIKALEVI---------------IEKANA-APIIVAYHFNSDLA-------- 82
                    K++  + I               I+K       ++   + S L         
Sbjct: 952  VSLNGTCFKVELFDDIRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLRK 1011

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1012 NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1070

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1071 NPSLEDQACDRI-----YRVGQEKDVVMHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1123


>gi|225556696|gb|EEH04984.1| transcriptional accessory protein [Ajellomyces capsulatus G186AR]
          Length = 1984

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1655 KLFEDFTKKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKESHKQYDEIQKS 1714

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1715 LAAKNSHIRDVAHAPKLIALRDLLVDCGIGVDPSTEGELDTGASYVSPHRALVFCQMKEM 1774

Query: 81   LARLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q                       K    + ++N +    +L    +  G GLNL 
Sbjct: 1775 LDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1834

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1835 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1888

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1889 KIDVASTVVN 1898


>gi|194382816|dbj|BAG64578.1| unnamed protein product [Homo sapiens]
          Length = 677

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
           ++ Y  F +        E + +                +         +L N        
Sbjct: 357 VQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 416

Query: 46  KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
           +H +                   H  K+ AL+ ++                       I+
Sbjct: 417 QHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRIL 476

Query: 73  VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +     S L  ++                       +    +  +N +  I +L      
Sbjct: 477 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 536

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 537 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 590

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I + +++
Sbjct: 591 KIMGLQKFKMNIANTVIS 608


>gi|149030493|gb|EDL85530.1| transcription termination factor, RNA polymerase II (predicted),
            isoform CRA_b [Rattus norvegicus]
          Length = 1070

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------------------------- 54
               +  S+ ++  Q              KE+  E                          
Sbjct: 820  STVHVLSQLLRLRQCCCHLSLLKSVLDPKELESEGLVLSLEEQLSALTLSKVDVSEPSPT 879

Query: 55   --------KIKALEVI---------------IEKANA-APIIVAYHFNSDLA-------- 82
                    K++  + I               I+K       ++   + S L         
Sbjct: 880  VSLNGTCFKVELFDDIRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLRK 939

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 940  NRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 998

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 999  NPSLEDQACDRI-----YRVGQEKDVVMHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1051


>gi|224052611|ref|XP_002191629.1| PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
            [Taeniopygia guttata]
          Length = 1844

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 53/223 (23%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKIKALEVII 63
               +         +L N        +H +                   H  K+ AL+ ++
Sbjct: 1558 STGHVFQALQYLRKLCNHPALVLTTQHPEYKRITEQLAAQNSSLRDIQHAPKLSALKQLL 1617

Query: 64   EKAN----------------AAPIIVAYHFNSDLARLQK-------------AFPQGRTL 94
                                   +++     S L  ++                      
Sbjct: 1618 LDCGLGNGGSSESGTEAVVAQHRVLIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPA 1677

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +  +N +  I +L       G GLNL  G + +VF    W+        +   +
Sbjct: 1678 GQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLT-GADTVVFVEHDWNPMR-----DLQAM 1731

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G KR V VY LI + T++E ++   + K  I + +++
Sbjct: 1732 DRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVIS 1774


>gi|114631901|ref|XP_507937.2| PREDICTED: helicase, lymphoid-specific isoform 16 [Pan troglodytes]
          Length = 700

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 426 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 485

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 486 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 545

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 546 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 599

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 600 AKRKLEKLIIH 610


>gi|73946611|ref|XP_859774.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 4 [Canis familiaris]
          Length = 1556

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1020

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1021 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1080

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1081 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1136

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|326478381|gb|EGE02391.1| TATA-binding protein-associated factor MOT1 [Trichophyton equinum CBS
            127.97]
          Length = 1912

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1592 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSS 1651

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1652 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1711

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1712 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1770

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1771 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1825

Query: 194  LLN 196
            ++N
Sbjct: 1826 VVN 1828


>gi|326473865|gb|EGD97874.1| TBP associated factor Mot1 [Trichophyton tonsurans CBS 112818]
          Length = 1905

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1585 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSS 1644

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1645 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1704

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1705 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1763

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1764 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1818

Query: 194  LLN 196
            ++N
Sbjct: 1819 VVN 1821


>gi|194224801|ref|XP_001490809.2| PREDICTED: SWI/SNF related, matrix associated, actin dependent
            regulator of chromatin, subfamily a, member 2 [Equus
            caballus]
          Length = 1548

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 935  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 994

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 995  NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1054

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1055 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1110

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1111 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1159


>gi|115462049|ref|NP_001054624.1| Os05g0144300 [Oryza sativa Japonica Group]
 gi|53749343|gb|AAU90202.1| putative transcriptional regulator [Oryza sativa Japonica Group]
 gi|113578175|dbj|BAF16538.1| Os05g0144300 [Oryza sativa Japonica Group]
          Length = 1128

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKA 58
           Y +        L           + +++  +  N    + E  +  +         K + 
Sbjct: 693 YEQVTSNGRVSLGSGLKSKA-LQNLSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFEL 751

Query: 59  LEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN- 105
           L+ ++ K       +++                               ++    + ++N 
Sbjct: 752 LDRLLPKLQRAGHRVLLFSQMTKLLDILEVYLQMYQFKYMRLDGSTKTEERGRLLADFNK 811

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  L      + G GLNLQ   + ++ F   W+ +     +++    R  + G K  
Sbjct: 812 KDSEYFLFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKNE 865

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +I+E +L R + K  I   ++ A
Sbjct: 866 VRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQA 898


>gi|326912967|ref|XP_003202815.1| PREDICTED: transcription termination factor 2-like [Meleagris
            gallopavo]
          Length = 1176

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 66/243 (27%), Gaps = 69/243 (28%)

Query: 22   AFNSASKTVKCLQLANGAVYY--------------------------------------- 42
              +  S  ++  Q                                               
Sbjct: 927  TAHVLSMLLRLRQCCCHLSLLKVALDKVNLTSEGLSLSIEEQLSALTLSELQTPDSKTTV 986

Query: 43   -----------DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA--------- 82
                        E           +  L+ I     +   +V   + S L          
Sbjct: 987  YLNGTAFNTDLFEITKESTKVSHLLAELKTIQSHPESQKSVVVSQWTSMLKVVAVHLQRL 1046

Query: 83   -RLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    ++E+N       ++     + G GLNL  GGN L    + W
Sbjct: 1047 GLKYSVVDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLT-GGNHLFLLDMHW 1105

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +    +Q  +RI      + G ++ V ++  + + T++E ++Q    K  +   +L A K
Sbjct: 1106 NPALEEQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKIVQLQTKKKGLAQQVL-AGK 1159

Query: 200  KET 202
             ET
Sbjct: 1160 GET 1162


>gi|317143637|ref|XP_001819595.2| DNA repair protein rhp54 [Aspergillus oryzae RIB40]
          Length = 827

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 529 LKAIGLLKKLCNHPDLLNLSTDLPGCEFAFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 588

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 589 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNVNKRQKLVDKFNNPDG 648

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 649 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 702

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 703 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 734


>gi|223462579|gb|AAI50807.1| Chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2711

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 708 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 767

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 768 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 827

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 828 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 884

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 885 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|168016565|ref|XP_001760819.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162687828|gb|EDQ74208.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1644

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 70/182 (38%), Gaps = 22/182 (12%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                  +         K++ L++++++  A    +++       L  L+           
Sbjct: 1210 PPLQSFDFAKMLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYL 1269

Query: 91   -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +D+        +   I +      + G G+NL    + ++F+   W+     
Sbjct: 1270 RLDGSSTIMDRRDMVNDFQHRSDIFVFLLSTRAGGLGINLTA-ADTVIFYESDWNPT--- 1325

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
              ++   + R  + G  + V VY LI   T++E +++R   K+T+Q L++   NA + + 
Sbjct: 1326 --MDLQAMDRAHRLGQTKEVTVYRLICTGTVEEKIMKRASQKNTVQQLVMTGNNASQGDV 1383

Query: 203  IH 204
            + 
Sbjct: 1384 LE 1385


>gi|169612227|ref|XP_001799531.1| hypothetical protein SNOG_09232 [Phaeosphaeria nodorum SN15]
 gi|206557941|sp|Q0UG82|INO80_PHANO RecName: Full=Putative DNA helicase INO80
 gi|160702459|gb|EAT83424.2| hypothetical protein SNOG_09232 [Phaeosphaeria nodorum SN15]
          Length = 1673

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ +++  KA    +++ +     +  +++                    +  
Sbjct: 1397 DSGKLARLDALLKGLKAGDHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1456

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  ++  I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1457 TVADFQSDPTIFVFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1510

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI   TI+E + +R   K  +Q ++++ 
Sbjct: 1511 LGQTRQVTVYRLITSGTIEERIRKRALQKEEVQRVVISG 1549


>gi|149045437|gb|EDL98437.1| similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog
           of, B (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 819

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 72/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K    +         +             +L N           KE +  + +  
Sbjct: 467 IELYRKLLSSQSVRFCLQGLLGNSAHLICIGALKKLCNHPRLLFSFVKGKEFNSSRDENE 526

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLAR 83
           E  + +                                         +I+  ++   L  
Sbjct: 527 ERSLCQGLLTVFPAGYNLLQLSESESGKLQVLVKLLAAISELRPTEKVILVSNYRQTLNL 586

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNI 131
           L++                 + +    +  +N       +      + G GLNL  GG+ 
Sbjct: 587 LEEVCKCHGYACARLDGQTPVSQRQQIVDNFNSKYSTDFIFLLSSKAGGVGLNL-IGGSH 645

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   + R  + G K  V VY L+   TI+E + QR  +K  + 
Sbjct: 646 LILYDIDWNPAT-----DIQAMARVWRDGQKHPVHVYRLLTTGTIEEKIYQRQISKQGLS 700

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 701 GAVVDLTR 708


>gi|119627334|gb|EAX06929.1| RAD54-like (S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 567

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L    +   + +S T    +L N      ++   +E         
Sbjct: 242 ELYKRFLRQAKPAEELLEGKMSVSSLSSITS-LKKLCNHPALIYDKCVEEEDGFVGALDL 300

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP------ 89
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 301 FPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLY 360

Query: 90  ----QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 361 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 419

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 420 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 468


>gi|119570422|gb|EAW50037.1| helicase, lymphoid-specific, isoform CRA_l [Homo sapiens]
          Length = 714

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 440 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 499

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 500 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 559

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 560 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 613

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 614 AKRKLEKLIIH 624


>gi|323348194|gb|EGA82445.1| Sth1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1359

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNXFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|302666050|ref|XP_003024628.1| hypothetical protein TRV_01197 [Trichophyton verrucosum HKI 0517]
 gi|291188693|gb|EFE44017.1| hypothetical protein TRV_01197 [Trichophyton verrucosum HKI 0517]
          Length = 1911

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1591 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSN 1650

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1651 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1710

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1711 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1769

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1770 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1824

Query: 194  LLN 196
            ++N
Sbjct: 1825 VVN 1827


>gi|301117486|ref|XP_002906471.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
            infestans T30-4]
 gi|262107820|gb|EEY65872.1| chromodomain-helicase-DNA-binding protein, putative [Phytophthora
            infestans T30-4]
          Length = 2158

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 38/227 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH-------- 52
            + Y     +    L         + +   ++  +  N        +  +           
Sbjct: 1133 QYYRAIYDKNKSFLYRGTKNGLPTLNNIQLQLRKCCNHPFLIKGVEERELDELGSNPTPA 1192

Query: 53   ---------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
                       K+  +  +I K   +   I++   F   L  L++       + +     
Sbjct: 1193 QVMEKTIECSGKMMLVSKLIPKLKRDGHKILIFSQFLKQLDLLERYCEANSFVFERLDGS 1252

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  ++       +      + G G+NL    + ++ F   W+      M +
Sbjct: 1253 TGGSVRQSAIDRFSRPHSKSFIFLLSTKAGGVGINL-IAADTVIIFDSDWNP-----MND 1306

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +R  + G K++V +Y L+ +NT +  +  R   K  ++  +L 
Sbjct: 1307 LQAQSRCHRIGQKKSVQIYRLVTRNTYESEMFDRASRKLGLEHAVLG 1353


>gi|224070615|ref|XP_002303179.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222840611|gb|EEE78158.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1682

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAF 88
            Y  ++   +    K++ L +++ K  +    +++       L                 
Sbjct: 660 LYFPDRRLIQFDCGKLQELAILLRKLKSEGHRVLIFTQMTKMLDILEAFINLYGYTYMRL 719

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     +Q +N   KI +      S G G+NL  G + ++F+   W+       
Sbjct: 720 DGSTQPEDRQTLMQRFNTNPKIFIFILSTRSGGVGINL-VGADTVIFYDSDWNPA----- 773

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 774 MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 823


>gi|126334594|ref|XP_001365802.1| PREDICTED: similar to BRM protein [Monodelphis domestica]
          Length = 1570

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 975  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1034

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1035 SGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1094

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1095 DGTTKSEDRAALLKKFNEPGSQFFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1150

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1151 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1199


>gi|61742812|ref|NP_775544.2| chromodomain helicase DNA binding protein 6 [Mus musculus]
 gi|126540714|emb|CAM46169.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2711

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 708 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 767

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 768 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 827

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 828 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 884

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 885 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 938


>gi|297687067|ref|XP_002821047.1| PREDICTED: LOW QUALITY PROTEIN: lymphoid-specific helicase-like
           [Pongo abelii]
          Length = 890

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 616 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 675

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 676 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 735

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 736 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 789

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 790 AKRKLEKLIIH 800


>gi|189521245|ref|XP_696641.3| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Danio rerio]
          Length = 2063

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 1009 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAAEAPKTPSGAYEGV 1068

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++ K       ++V       L  L+          +         
Sbjct: 1069 GLTKASGKLMLLQKMLRKLKEQGHRVLVFSQMTKMLDLLEDFLDSEGYKYERIDGGITGA 1128

Query: 98   --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ F   W+        +    
Sbjct: 1129 LRQEAIDRFNAPGAVQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDIQAF 1182

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1183 SRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1224


>gi|166240364|ref|XP_638342.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|165988561|gb|EAL64859.2| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1604

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 30/219 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTV-------KCLQLANGAVYYDEEKHWKEV---H 52
             Y          +  ++ E  +   K         +  ++ N    + +E    E     
Sbjct: 877  MYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNIVKQLQKICNHPYLFKDEWDINEDLIRT 936

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCT 100
              K   ++ I+ K +     +++       +  +++ F                ++    
Sbjct: 937  SGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHL 996

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + EWN    P  +      + G G+NLQ   + ++ F   W+ +     ++     R  +
Sbjct: 997  VVEWNRPDSPFWIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRCHR 1050

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G   +V V+ LI+ N+I+E +L R   K  I   ++ A
Sbjct: 1051 IGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKIIQA 1089


>gi|291383314|ref|XP_002708230.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2-like isoform 1 [Oryctolagus
            cuniculus]
          Length = 1595

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 982  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1041

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1042 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1101

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1102 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1157

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|254573876|ref|XP_002494047.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|238033846|emb|CAY71868.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
          Length = 728

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 17/181 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------- 86
            +      E++        K + L  I+++  A   I+   F   LA L+          
Sbjct: 533 CSQCKSLSEQQTPPLERSAKSERLLEILKRDPARKTIIFSQFTKLLATLKPFLTKNGFKC 592

Query: 87  --AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                      +D    +     +  +L         GLNL    N +V +  WW+ +  
Sbjct: 593 VLYEGTMTRAMRDTTLKEFNENPETTVLLCSLKCGAIGLNLT-IANRVVIYDPWWNPQ-- 649

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +E   + R  + G  + V VY LI +++++E +++    K  + + +++   K+ + 
Sbjct: 650 ---VEDQAIDRVYRFGQTKEVDVYRLIIKDSVEENIVRLQEKKRQVAEAVVDIHGKKKVS 706

Query: 205 V 205
           +
Sbjct: 707 L 707


>gi|207344407|gb|EDZ71563.1| YIL126Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1358

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 754 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 813

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 814 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGL 873

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 874 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 927

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 928 AMQKLDIDGKVIQAGK 943


>gi|15230608|ref|NP_187252.1| ATCHR12; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|6671969|gb|AAF23228.1|AC013454_15 putative transcriptional regulator [Arabidopsis thaliana]
          Length = 1132

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 79/214 (36%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIK 57
           Y +        LQ  + ++ +  + T++  +  N    +    +             K +
Sbjct: 687 YKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGKFE 746

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
            L+ ++ K       I++       +                       D+    ++++N
Sbjct: 747 LLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFN 806

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E   P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 807 EPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 860

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 861 EVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQA 894


>gi|73946669|ref|XP_860771.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 32 [Canis familiaris]
          Length = 1586

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1020

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1021 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1080

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1081 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1136

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|328867898|gb|EGG16279.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1282

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 24/213 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQ-LANGAVYYD---EEKHWKEVHDEKIKA 58
           +Y +   +   ++  ++       + T+K +Q + N    +    +          K   
Sbjct: 592 EYGQLPIDPTSEMFKKSKTGMRGFNNTLKQMQKICNHPYLFLSEWDINEDLIRASGKFDM 651

Query: 59  LEVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN- 105
           ++ I+   KA+   +++       +                       ++    + EWN 
Sbjct: 652 MDQILLKMKASGHRVLIFTQMTEVINLMGEYFSLKEWDYLRLDGSTKPEERSRLVVEWNR 711

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G G+NLQ   + ++ F   W+ +     ++     R  + G    
Sbjct: 712 KDSPFFIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRCHRVGQVNR 765

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ LI+ N+I+E +L+R   K  I   ++ A
Sbjct: 766 VNVFRLISANSIEEKILERATDKLEIDAKIIQA 798


>gi|297821893|ref|XP_002878829.1| PKL/SSL2 [Arabidopsis lyrata subsp. lyrata]
 gi|297324668|gb|EFH55088.1| PKL/SSL2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1399

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 73/242 (30%), Gaps = 45/242 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  ++  ++       +  +      +E       
Sbjct: 533 EYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPAIHDANEAFKQLLE 592

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------------- 95
                ++    ++  K     +++   F   L  L+                        
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKFQHMLDLLEDYCSYKKWN 652

Query: 96  -----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      +    I  +N              + G G+NL    + ++ +   W+  
Sbjct: 653 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP- 710

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 +   + R  + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK + 
Sbjct: 711 ----HADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQN 766

Query: 203 IH 204
           I+
Sbjct: 767 IN 768


>gi|114631903|ref|XP_001150736.1| PREDICTED: helicase, lymphoid-specific isoform 2 [Pan troglodytes]
          Length = 714

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 440 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 499

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 500 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 559

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 560 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 613

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 614 AKRKLEKLIIH 624


>gi|73946661|ref|XP_860636.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 28 [Canis familiaris]
          Length = 1549

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 954  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1013

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1014 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1073

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1074 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1129

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1130 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1178


>gi|254586715|ref|XP_002498925.1| ZYRO0G21780p [Zygosaccharomyces rouxii]
 gi|238941819|emb|CAR29992.1| ZYRO0G21780p [Zygosaccharomyces rouxii]
          Length = 1094

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 80/223 (35%), Gaps = 39/223 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEKH 47
            Q+  Y  +  ++++A N+            +  ++  +  N    +             
Sbjct: 377 MQKTWYKQILEKDLDAVNASGGQKESKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTDE 436

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLD 95
               +  K+K L+ ++   K   + +++    +  L  L+                   +
Sbjct: 437 HLVYNSAKLKVLDKLLRKMKEQGSRVLIFSQMSRLLDILEDYCFLREYDYCRIDGSTDHE 496

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +I E+N       L      + G G+NL    +++V +   W+ +      +   +
Sbjct: 497 DRIRSIDEYNRPDSNKFLFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAM 550

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+ V V+  +  N++++ +L+R   K  +  L++ 
Sbjct: 551 DRAHRIGQKKQVKVFRFVTDNSVEDKILERATQKLRLDQLVIQ 593


>gi|195161920|ref|XP_002021804.1| GL26702 [Drosophila persimilis]
 gi|194103604|gb|EDW25647.1| GL26702 [Drosophila persimilis]
          Length = 1943

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
            KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 803  KQYYKWILTKNFDALRKGKKGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 862

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 863  TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 922

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 923  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 976

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 977  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1021


>gi|325087704|gb|EGC41014.1| TBP associated factor [Ajellomyces capsulatus H88]
          Length = 1756

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1427 KLFEDFTKKEQKDITKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKESHKQYDEIQKS 1486

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1487 LAAKNSHIRDVAHAPKLIALRDLLVDCGIGVDPSTEGELDTGASYVSPHRALVFCQMKEM 1546

Query: 81   LARLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q                       K    + ++N +    +L    +  G GLNL 
Sbjct: 1547 LDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1606

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1607 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1660

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1661 KIDVASTVVN 1670


>gi|315055153|ref|XP_003176951.1| TATA-binding protein-associated factor MOT1 [Arthroderma gypseum CBS
            118893]
 gi|311338797|gb|EFQ97999.1| TATA-binding protein-associated factor MOT1 [Arthroderma gypseum CBS
            118893]
          Length = 1906

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1586 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSS 1645

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1646 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1705

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1706 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1764

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1765 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1819

Query: 194  LLN 196
            ++N
Sbjct: 1820 VVN 1822


>gi|225436589|ref|XP_002275100.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1764

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 866  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGNRSTNDCGK 925

Query: 51   -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                 +   K+  L+ ++EK +     +++       L  L +         +       
Sbjct: 926  LERLILSSGKLVLLDKLLEKLHETNHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTK 985

Query: 98   ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   +  +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 986  AELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 1039

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1040 AMSRAHRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDHLVIQKLNAEG 1090


>gi|34328020|dbj|BAB13390.3| KIAA1564 protein [Homo sapiens]
          Length = 2432

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 910  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 969

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 970  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1029

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1030 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1086

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1087 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1139


>gi|296418119|ref|XP_002838689.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634650|emb|CAZ82880.1| unnamed protein product [Tuber melanosporum]
          Length = 404

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 76/248 (30%), Gaps = 59/248 (23%)

Query: 3   QYHKFQRE-LYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   + +    D+      G +       +  ++  ++ N    ++  +    +     
Sbjct: 32  LYKGLRDKISIMDIIEKAASGADENNATLMNLVMQFRKVCNHPDLFERAETSSPIDLGLY 91

Query: 53  ------------------------------DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
                                           K+  L+ ++ +       +++ +     
Sbjct: 92  PIPKILPEPSSEKMGYAHIKVPSMRRFVSDSGKLAKLDALLTELKAGGHRVLLYFQMTKM 151

Query: 81  L-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
           +            R  +     +  D+           +I +      + G G+NL    
Sbjct: 152 MDLCEEYLTYRHHRYLRLDGSSKLEDRRDMVSAWQTTPEIFVFILSTRAGGLGINLTA-A 210

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++F+   W+       I+   + R  + G  R V VY LI + TI+E +  R + K  
Sbjct: 211 DTVIFYDSDWNPT-----IDSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRTRAKQKEE 265

Query: 190 IQDLLLNA 197
           +Q +++  
Sbjct: 266 VQRVVIQG 273


>gi|302508605|ref|XP_003016263.1| hypothetical protein ARB_05661 [Arthroderma benhamiae CBS 112371]
 gi|291179832|gb|EFE35618.1| hypothetical protein ARB_05661 [Arthroderma benhamiae CBS 112371]
          Length = 1904

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1584 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSN 1643

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1644 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1703

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1704 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1762

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1763 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1817

Query: 194  LLN 196
            ++N
Sbjct: 1818 VVN 1820


>gi|281340559|gb|EFB16143.1| hypothetical protein PANDA_017702 [Ailuropoda melanoleuca]
          Length = 2448

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 924  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 983

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 984  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 1043

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 1044 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 1100

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1101 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1153


>gi|308497953|ref|XP_003111163.1| CRE-TAG-192 protein [Caenorhabditis remanei]
 gi|308240711|gb|EFO84663.1| CRE-TAG-192 protein [Caenorhabditis remanei]
          Length = 2998

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            K Y       +  L      A +  +  ++  +  N     +  +               
Sbjct: 1463 KFYRAILERNFSHLCKGT-SAPSLMNVMMELRKCCNHPFLINGAEETIMNDFRLAHPDWD 1521

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K+  +E ++ K   +   +++       L  L++         +  
Sbjct: 1522 DETLAQKALVQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERI 1581

Query: 98   ---------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +++      +      + G G+NL    + ++ F   W+ +    
Sbjct: 1582 DGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1637

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
              +     R  + G K+ V VY LI  NT +  +  +   K  +   +L    ALK E  
Sbjct: 1638 --DLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGT 1695

Query: 204  HV 205
             +
Sbjct: 1696 AL 1697


>gi|225681199|gb|EEH19483.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 1083

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQK-----------AFPQ 90
           DE +    +   KI+ L  I++K +     IV   F S L +++                
Sbjct: 825 DEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKGANIGYARYDGA 884

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            R   ++    +  N  K  +L     +   GLNL    + +V    +W+       +E 
Sbjct: 885 MRNDMRENSLDRLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEE 938

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  +      V VY L  +NT++E ++     K  + +  +  
Sbjct: 939 QAIDRVHRLNQTIDVKVYKLTIRNTVEERIVDLQEHKRELANATIEG 985



 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 16/86 (18%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGA------------VYYDEEKH 47
           Y + +    + L   + G +I   ++    ++  Q  N              V       
Sbjct: 569 YSRLEQRTDKTLERMIGGNSINYASALVLLLRLRQACNHPDLVKSDLAQDKDVLTGNFGG 628

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIV 73
            +  +  K + ++ I        +I 
Sbjct: 629 SQSKNSVKEEDVDDIANLMGGLSVIT 654


>gi|149733277|ref|XP_001502820.1| PREDICTED: chromodomain helicase DNA binding protein 6 [Equus
           caballus]
          Length = 2717

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 707 KYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 766

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 937


>gi|328865462|gb|EGG13848.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1157

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 76/226 (33%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS------------ASKTVKCLQLANGAVYY-------DEEKH 47
            QRE Y  L  ++ EA +              +  ++  +  N    +            
Sbjct: 457 MQREWYKSLLTKDFEALHGIGVKGGSGKVKLLNICMQLRKACNHPYLFDGAEEQPYTTGE 516

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
               +  K+  L+ ++   K   + +++       L  L+               G   +
Sbjct: 517 HIIDNSGKMVMLDRLLARLKQRGSRVLIFSQMARMLDILEDYMMYRDYKYCRIDGGTDSE 576

Query: 96  KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I+ +N     L        + G G+ L    +I+V F   W+ +     ++    
Sbjct: 577 SRENNIETFNAPGSELFAFLLTTRAGGLGITL-NTADIVVLFDSDWNPQ-----VDLQAQ 630

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V VY  + +++++E ++++   K  +   ++   +
Sbjct: 631 DRAHRIGQTKPVTVYRFVTESSMEEKMVEKAEMKLHLDAAVIQQGR 676


>gi|320164356|gb|EFW41255.1| DNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1777

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDP 98
               K+  L+ ++ K  A    +++                  L R  +   Q     ++ 
Sbjct: 1464 DSIKMVVLDKLLTKLKAEGHRVLIYSQMTKMIDLLEEFMNFRLHRYVRLDGQTTIETRNN 1523

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                      I +      + G G+NL    + ++F+   W+       +++  + R  +
Sbjct: 1524 MVSNFQTRSDIFVFLLSTRAGGVGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRSHR 1577

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY LIA+ T++E +L R R KS I  +++
Sbjct: 1578 LGQTRQVTVYRLIAKGTVEERILARARQKSEIHKMVI 1614


>gi|330922223|ref|XP_003299753.1| hypothetical protein PTT_10809 [Pyrenophora teres f. teres 0-1]
 gi|311326467|gb|EFQ92163.1| hypothetical protein PTT_10809 [Pyrenophora teres f. teres 0-1]
          Length = 1302

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 61/201 (30%), Gaps = 33/201 (16%)

Query: 26  ASKTVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAY 75
            +  ++  +  +                        K   LE +++         I++  
Sbjct: 624 MNLVMQLRKCCSHPYQLPGVAPDPYYLGDHIIRASGKFILLEKLLKHTVFAQGKKILIFS 683

Query: 76  HFNSDLAR---------------LQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPAS 118
            F   L                          +  +    I+ +N+      ++     +
Sbjct: 684 SFTRTLDHCEDLLSLISNHGERFKSLRLDGSTSRARRNLDIRLFNQKGSDYKVMLLSTRA 743

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL      ++F    W+ +            R  + G  + V +Y L  Q T++E
Sbjct: 744 GGLGINLTS-AEDVIFLDEDWNPQITL-----QAEARAHRIGQTKKVTIYKLCTQGTVEE 797

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            ++ R+R K  +   +  +++
Sbjct: 798 QMMGRIRKKLYLSAKITESMQ 818


>gi|148674355|gb|EDL06302.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 2695

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 705 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 764

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 765 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 824

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 825 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 881

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 882 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 935


>gi|281349310|gb|EFB24894.1| hypothetical protein PANDA_007733 [Ailuropoda melanoleuca]
          Length = 1561

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 952  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1011

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1012 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1071

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1072 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1127

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1128 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1176


>gi|158295468|ref|XP_001688808.1| AGAP006165-PB [Anopheles gambiae str. PEST]
 gi|157016052|gb|EDO63814.1| AGAP006165-PB [Anopheles gambiae str. PEST]
          Length = 2856

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 35/197 (17%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
             L    I A ++     + +Q   G                K++ L+ +++K  +    +
Sbjct: 1703 QLLHPIISAMSTQFPDPRLIQYDCG----------------KLQTLDRLLKKLKSEGHRV 1746

Query: 72   IVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-IPLLFAHPASCG 120
            ++       L  L+        +           +    ++ +N  + +        S G
Sbjct: 1747 LIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQVLMERFNNDRRMFAFILSTRSGG 1806

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+E +
Sbjct: 1807 VGINLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEENI 1860

Query: 181  LQRLRTKSTIQDLLLNA 197
            L++   K  + DL +  
Sbjct: 1861 LKKANQKRILGDLAIEG 1877


>gi|158295466|ref|XP_316223.4| AGAP006165-PA [Anopheles gambiae str. PEST]
 gi|157016051|gb|EAA11849.4| AGAP006165-PA [Anopheles gambiae str. PEST]
          Length = 3418

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 35/197 (17%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
             L    I A ++     + +Q   G                K++ L+ +++K  +    +
Sbjct: 1703 QLLHPIISAMSTQFPDPRLIQYDCG----------------KLQTLDRLLKKLKSEGHRV 1746

Query: 72   IVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-IPLLFAHPASCG 120
            ++       L  L+        +           +    ++ +N  + +        S G
Sbjct: 1747 LIFTQMTRMLDVLEAFLNYHGHIYLRLDGTTKVEQRQVLMERFNNDRRMFAFILSTRSGG 1806

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+E +
Sbjct: 1807 VGINLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEENI 1860

Query: 181  LQRLRTKSTIQDLLLNA 197
            L++   K  + DL +  
Sbjct: 1861 LKKANQKRILGDLAIEG 1877


>gi|47211690|emb|CAF91815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1369

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y     + +  L         +  +  +   +  N    +               +  
Sbjct: 825  KYYKFILTKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFPTAAIEAPKMPNGMYDGS 884

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L+          +         
Sbjct: 885  ALTKASGKLLLLQKMMRRLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGG 944

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 945  MRQEAIDRFNAPGAQQFAFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 998

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  R V +Y  + + +++E + Q  + K  +  L++
Sbjct: 999  SRAHRIGQNRKVMIYRFVTKASVEERITQVAKKKMMLTHLVV 1040


>gi|253748230|gb|EET02490.1| DNA repair and recombination protein Rhp26p [Giardia intestinalis
           ATCC 50581]
          Length = 930

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 36/225 (16%)

Query: 2   KQYHKFQ--RELYCDLQG--------ENIEAFNSASKTVKCLQLANGAVYYDEEKHW--- 48
           + Y +     E    L+             A  + +K ++   + +     D        
Sbjct: 476 QLYLQLLSSDEAIIKLKQLSATSRTFGEGIAKLTMAKLIQLQHICDHPSLLDTTGTDAPE 535

Query: 49  KEVHDEKIKALEV---IIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGR 92
            +    K+  L      +   +   I+V       L+ ++K                   
Sbjct: 536 LQESSCKLTYLMEKLTELWNQSHDKILVFCQGRMMLSIVEKAFLEHSFFRDSYLRMDGHV 595

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +D  P  I ++  +  I L        G GLNL    N +   +  W+       I+  
Sbjct: 596 PVDARPALISQFSTDPHIRLFLLTTRVGGLGLNLTA-ANHVFLLNPNWNPT-----IDDQ 649

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V R  +    + V VY +    TI+E +  R   K  +   +L+
Sbjct: 650 SVERCWRITQTKRVTVYKIFTGGTIEEKIFNRQIYKRLLVSRVLD 694


>gi|198473015|ref|XP_001356144.2| GA17649 [Drosophila pseudoobscura pseudoobscura]
 gi|198139261|gb|EAL33204.2| GA17649 [Drosophila pseudoobscura pseudoobscura]
          Length = 1943

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
            KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 803  KQYYKWILTKNFDALRKGKKGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 862

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 863  TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 922

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 923  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 976

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 977  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1021


>gi|168066598|ref|XP_001785222.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162663184|gb|EDQ49963.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1727

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + LQ   G +     +    +   K +    +I       + V   F +           
Sbjct: 1020 RLLQFDCGKLQ----ELAVLLRRLKSQGHRALIFTQMTKMLDVLESFINLYGYTYMRLDG 1075

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1076 STKPEQRQILMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1129

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1130 LQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRILDDLVIQS 1177


>gi|134116877|ref|XP_772665.1| hypothetical protein CNBK0390 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255283|gb|EAL18018.1| hypothetical protein CNBK0390 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 926

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 75/219 (34%), Gaps = 34/219 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKA 58
           RE       +++      +  ++  ++++    +D                     K+  
Sbjct: 592 REWALKQATKHVNNMRLQNLVMQLRKISSHPYLFDWPSDPATGELVVDDNLVNASGKMLL 651

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWN 105
           L  +++        +++   F + L                        +     + E+N
Sbjct: 652 LNRLLDALFQKGHRVLLFSQFTTMLDVIEDWATVYKGWKVCRIDGSTPQESRRDQMDEFN 711

Query: 106 EGK-----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            GK       L      + G G+NL    + ++FF   W+ +     ++     R  + G
Sbjct: 712 GGKDDPNACKLFLLSTRAGGLGINLVS-ADTVIFFDQDWNPQ-----MDLQAQDRAHRIG 765

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + V V+ L++ +TI+  +L +   K  ++ L+++  K
Sbjct: 766 QTKPVLVFRLVSAHTIESKILAKAGNKRKLEALVISQGK 804


>gi|156052200|ref|XP_001592061.1| hypothetical protein SS1G_07509 [Sclerotinia sclerotiorum 1980]
 gi|206557750|sp|A7EQA8|INO80_SCLS1 RecName: Full=Putative DNA helicase INO80
 gi|154705285|gb|EDO05024.1| hypothetical protein SS1G_07509 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1707

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ K       +++ +     +  +++                    +  
Sbjct: 1420 DSGKLAKLDSLLTKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYLRLDGSTKLEDRRD 1479

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1480 TVHDFQTRPEIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1533

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V VY +I + TI+E + +R   K  +Q +++
Sbjct: 1534 LGQTRQVTVYRMITRGTIEERIRKRALQKEEVQKVVM 1570


>gi|71034023|ref|XP_766653.1| ATP-dependent helicase [Theileria parva strain Muguga]
 gi|68353610|gb|EAN34370.1| ATP-dependent helicase, putative [Theileria parva]
          Length = 1632

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK---------DPCTIQEW 104
            K+    ++  K+     I+   F+  L  L+      G T  +             I  +
Sbjct: 1317 KVLGPLLLKLKSEEHRCIIYTQFSKMLDILENWINFMGFTYIRLDGSTKIDMRQKIINRF 1376

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N   KI L  +   + G G+ L  G + ++F+   W+       I+R  + R  + G  +
Sbjct: 1377 NENTKIFLFISSTRTGGVGITLT-GADTVIFYDTDWNPA-----IDRQAMDRCHRIGQTK 1430

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             V VY LI ++T++E + ++   K  + DL+++  + +  H
Sbjct: 1431 DVNVYRLITEHTVEENIWRKQLQKRKLDDLIVDQGQFDIQH 1471


>gi|242790191|ref|XP_002481516.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718104|gb|EED17524.1| dsDNA-dependent ATPase Rad54, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 808

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 510 LKAIGLLKKLCNHPDLLDLSRDLPGCEQYFPDDYVPPDGRGRDRDIKSWYSGKMMVLDRM 569

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N+   
Sbjct: 570 LARIRQDTNDKIVLISNYTQTLDLFEKLCRARAYGCLRLDGTMNVNKRQKLVDKFNDPNG 629

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 630 EEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 683

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 684 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 715


>gi|295673658|ref|XP_002797375.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226282747|gb|EEH38313.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 1084

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD----- 95
            DE +    +   KI+ L  I++K +     IV   F S L +++               
Sbjct: 826 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKSANIGYARYDG 885

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++    +  N  K  +L     +   GLNL    + +V    +W+       +E
Sbjct: 886 AMRNDLRENSLDRLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVE 939

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + R  +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 940 EQAIDRVHRLNQTIDVKIYKLTVRNTVEERIVDLQERKRELANATIEG 987



 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 16/86 (18%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGA------------VYYDEEKH 47
           Y + +    + L   + G +I   ++    ++  Q  N              V       
Sbjct: 565 YSRLEQRTDKTLERMIGGNSINYASALVLLLRLRQACNHPDLVKSDLAQDKDVLTGNFGG 624

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIV 73
            +  +  K + ++ I        +I 
Sbjct: 625 SQSKNSVKEEDVDDIANLMGGLSVIT 650


>gi|320461545|ref|NP_001189381.1| chromodomain-helicase-DNA-binding protein 8 [Danio rerio]
          Length = 2549

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 43/234 (18%)

Query: 2    KQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y       +  L      N    N  +  ++  +  N        +            
Sbjct: 1133 KYYRAILERNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYD 1192

Query: 52   -------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                            K+  L+ ++   KA    +++       L  L+      R L +
Sbjct: 1193 PLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYE 1252

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL    +  V F   W+ +  
Sbjct: 1253 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCVIFDSDWNPQN- 1310

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                +     R  + G  +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1311 ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1360


>gi|109014585|ref|XP_001112974.1| PREDICTED: transcription termination factor 2-like isoform 1 [Macaca
            mulatta]
          Length = 1170

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 920  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 979

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 980  VSLNGTFFKTELFEDTRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1039

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1040 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1098

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1099 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1151


>gi|109014588|ref|XP_001112999.1| PREDICTED: transcription termination factor 2-like isoform 2 [Macaca
            mulatta]
          Length = 1163

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 913  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 972

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 973  VSLNGTFFKTELFEDTRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1032

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1033 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1091

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1092 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1144


>gi|300120100|emb|CBK19654.2| unnamed protein product [Blastocystis hominis]
          Length = 1570

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 41/236 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           K Y          +  E+    +  +  ++  +  N        +    +          
Sbjct: 315 KFYRAVYDRNTSVIGNESKNLPSLINIMMEIRKCCNHPYLIRGAESSIMLEIRTPASDWK 374

Query: 52  -----------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA----------F 88
                         K+  L+ ++   ++    +++       L  +Q             
Sbjct: 375 GEELVLQALLTSSGKMVLLDKLLPKLQSQGHRVLLFSQMTHMLDIIQDYLTLKGYLFERI 434

Query: 89  PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G   +     I+ ++       +      + G G+NL    + ++ +   W+ +    
Sbjct: 435 DGGVKSNDRQAAIERFSAPGSDRFIFLICTRAGGVGINLTA-ADTVIIYDSDWNPQN--- 490

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             +     R  + G  +AV VY LI   T +  + QR   K  +   +LN L +  
Sbjct: 491 --DIQAQARCHRIGQDKAVKVYRLITNRTYEMEMFQRANLKLGLDKAVLNPLNQNV 544


>gi|195346399|ref|XP_002039753.1| GM15831 [Drosophila sechellia]
 gi|194135102|gb|EDW56618.1| GM15831 [Drosophila sechellia]
          Length = 2550

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 35/198 (17%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              L    I A  +     + +Q   G                K++ ++ ++ +   N   
Sbjct: 1640 LALLHPIISAMTTKFPDPRLIQYDCG----------------KLQTMDRLLRQLKVNGHR 1683

Query: 71   IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
            +++       L  L+        +           +    ++ +N + +I        S 
Sbjct: 1684 VLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSG 1743

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+  
Sbjct: 1744 GVGINLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVN 1797

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +L++   K  + D+ +  
Sbjct: 1798 ILKKANQKRMLSDMAIEG 1815


>gi|109090014|ref|XP_001095376.1| PREDICTED: lymphoid-specific helicase isoform 10 [Macaca mulatta]
          Length = 739

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 465 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 524

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 525 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 584

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 585 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 638

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 639 AKRKLEKLIIH 649


>gi|328786874|ref|XP_393832.4| PREDICTED: putative DNA helicase Ino80-like [Apis mellifera]
          Length = 1636

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
             K+  L+ ++   K     +++       +  L++                +  D+    
Sbjct: 1099 GKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHKKHTFMRLDGSSKISDRRDMV 1158

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                    I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1159 ADFQKRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1212

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1213 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1249


>gi|294891224|ref|XP_002773482.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239878635|gb|EER05298.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 994

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 35/222 (15%)

Query: 4   YHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYY-----DEEKHWKEVH----- 52
           Y          L G       +  +  V+  +  N           E    +        
Sbjct: 533 YRAIFERNKTYLSGAQKSGGPSLINLEVQLRKCCNHPFTIDGVEERELAMCQNKDQEFNR 592

Query: 53  ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K +     +++   F S L  +Q+         +          
Sbjct: 593 MIMASGKMVLLDKLLPKLHAEGHKVLLFSQFLSMLDLIQRYALYRGYSVERLDGSATAKA 652

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N  +    L      + G G+NL    ++++ F   W+ +     ++     
Sbjct: 653 REEAIDRFNTPESSAFLFLLSTRAGGIGINLTA-ADVVIIFDSDWNPQ-----MDIQATA 706

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G  + V VY L+   T +  + +R   K  I + +  
Sbjct: 707 RAHRIGQTKDVKVYRLVTNRTYEAQMFERASQKLGINEAVFQ 748


>gi|242010572|ref|XP_002426039.1| DNA repair and recombination protein RAD26, putative [Pediculus
           humanus corporis]
 gi|212510049|gb|EEB13301.1| DNA repair and recombination protein RAD26, putative [Pediculus
           humanus corporis]
          Length = 1206

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 33/204 (16%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHD----------------EKIKALEVII--EKAN 67
               +   ++ N    Y       ++ D                 K+  +E ++   K  
Sbjct: 629 FVGLINLRKICNHPHLYSGGPKHVKLDDLEFIPEENKFGYWKKAGKMIVMETLLKIWKKQ 688

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIPLLFAHPA 117
              +++       L+ L+                         I ++NE K   +F    
Sbjct: 689 GHRVLIFTQSRKMLSILENFVLSQNYEYLKLDGTTNIGSRQPLINKFNEEKKYYIFLSTT 748

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G       G N +V +   W+              R  + G +  V +Y L+   TI+
Sbjct: 749 HVGGLGVNLTGANRVVIYDPDWNPATDM-----QARERAWRIGQENQVTIYRLVTSGTIE 803

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E +  R   K  + + +L    + 
Sbjct: 804 EKIYHRQIFKQFLTNKVLKDPSQR 827


>gi|325117906|emb|CBZ53457.1| hypothetical protein NCLIV_032440 [Neospora caninum Liverpool]
          Length = 713

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 48/237 (20%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----- 62
           ++    + +G++       S     ++L N       +    +  ++  K    +     
Sbjct: 284 RKIFAAEAEGKSGFTGRVLSSIQGLMKLCNHPSLVKSQAQMLQGFEKCEKYFSELDLEGQ 343

Query: 63  ------------------------IEKANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK- 96
                                   I       I++  ++   L    +     G  + + 
Sbjct: 344 KARSRLVRPEISGKLLLLARLLDVIRTTTNDKIVLISNYTQTLDLFDRMCRDCGYPVMRL 403

Query: 97  --------DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                       I ++N+   P   +      + G G+NL  G N LV F   W+     
Sbjct: 404 DGQTSIKKRHAMITKFNDPMNPQSFVFLLSSKAGGCGVNL-IGANRLVLFDPDWNPAN-- 460

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              ++  + R  + G K+  ++Y   +  TI+E + QR   K  +  +L++  + + 
Sbjct: 461 ---DKQALARVWRDGQKKPCYIYRFFSTGTIEEKIYQRQICKDGLSAMLVSDGENQI 514


>gi|254567481|ref|XP_002490851.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238030647|emb|CAY68571.1| DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328351234|emb|CCA37634.1| DNA repair and recombination protein RAD54B [Pichia pastoris CBS
           7435]
          Length = 840

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 29/217 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHW------KEVHDE 54
           + Y          L    I   N    K +   ++ N      +E  +         +  
Sbjct: 482 ELYKDIIETNQAKL--GLINDRNFFLQKILILRKICNSPSLLKDEPDFARYNLGNRFNSG 539

Query: 55  KIKALEVII---EKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQE 103
           KIK   +++    +      ++  +F   L  LQ        K      +       +++
Sbjct: 540 KIKLTVLLLRKLFETTNEKCVIVSNFTKTLDVLQLIIEHNNWKYHRLDGSSKGRDKIVRD 599

Query: 104 WNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +NE       ++     + G GLNL  G + L+ F   W+       ++   + R  + G
Sbjct: 600 FNESPQKDRFIMLLSSKAGGVGLNL-IGASRLILFDNDWNPS-----VDIQAMARVHRDG 653

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            KR  F+Y L  + TIDE +LQR   K  + D  L+ 
Sbjct: 654 QKRHTFIYRLYTKGTIDEKILQRQLMKQNLSDKFLDD 690


>gi|6822074|emb|CAB71002.1| TATA box binding protein (TBP) associated factor (TAF)-like protein
            [Arabidopsis thaliana]
          Length = 2049

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 75/276 (27%)

Query: 1    MKQYHKFQ----RELYCDLQGENIEA-------------FNSASKTVKCLQLANGAVYYD 43
            +K Y +F     ++    +   +  A              +        L+L +  +   
Sbjct: 1702 LKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVL 1761

Query: 44   EEKHWKEV----------------------HDEKIKALEVIIEKAN-------------- 67
             +K  + V                      H  K+ AL+ I+E+                
Sbjct: 1762 GDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSV 1821

Query: 68   -AAPIIVAYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
                +++                     +            +K    ++ +N +  I +L
Sbjct: 1822 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1881

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE------RIGVTRQRQAGFKRAVF 166
                   G GLNL    + LVF    W+     Q            + R  + G KR V 
Sbjct: 1882 LLTTHVGGLGLNLTS-ADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVN 1940

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V+ LI + T++E V+   + K ++ + ++NA     
Sbjct: 1941 VHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASM 1976


>gi|296220824|ref|XP_002756500.1| PREDICTED: lymphoid-specific helicase isoform 2 [Callithrix
           jacchus]
          Length = 881

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 607 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 666

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 667 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 726

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 727 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 780

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 781 AKRKLEKLIIH 791


>gi|226288690|gb|EEH44202.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1912

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1583 KLFEDFTKKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKENHKRYNEIQKL 1642

Query: 51   -----------VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1643 LEAKNSHIRDVAHAPKLSALRDLLVDCGIGVDPSTEGELDTGANYVSPHRALVFCQMKEM 1702

Query: 81   LARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q    +                  K    + ++N +    +L    +  G GLNL 
Sbjct: 1703 LDIVQNDVFKKLLPSVQYLRLDGSVEAAKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1762

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1763 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1816

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1817 KIDVASTVVN 1826


>gi|295670740|ref|XP_002795917.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb01]
 gi|226284050|gb|EEH39616.1| TATA-binding protein-associated factor MOT1 [Paracoccidioides
            brasiliensis Pb01]
          Length = 1906

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1577 KLFEDFTKKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKENHKRYNEIQKS 1636

Query: 51   -----------VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1637 LEAKNSHIRDVAHAPKLSALRDLLVDCGIGVDPSTEGELDTGVNYVSPHRALVFCQMKEM 1696

Query: 81   LARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q    +                  K    + ++N +    +L    +  G GLNL 
Sbjct: 1697 LDIVQNDVFKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1756

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1757 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1810

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1811 KIDVASTVVN 1820


>gi|225681546|gb|EEH19830.1| modifier of transcription [Paracoccidioides brasiliensis Pb03]
          Length = 1912

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1583 KLFEDFTKKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKENHKRYNEIQKL 1642

Query: 51   -----------VHDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1643 LEAKNSHIRDVAHAPKLSALRDLLVDCGIGVDPSTEGELDTGANYVSPHRALVFCQMKEM 1702

Query: 81   LARLQKAFPQ-------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q    +                  K    + ++N +    +L    +  G GLNL 
Sbjct: 1703 LDIVQNDVFKRLLPSVQYLRLDGSVEAAKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1762

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1763 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1816

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1817 KIDVASTVVN 1826


>gi|308800202|ref|XP_003074882.1| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
 gi|119358821|emb|CAL52149.3| Swr1 Swr1-Pie_related helicase (IC) [Ostreococcus tauri]
          Length = 1023

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 19/186 (10%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
           N         +       +  +K   +    K++ L  ++   K     +++       L
Sbjct: 762 NILRLLAPLRKSIIRQSMFFPDKQLVQFDCGKLQVLATLLRTLKQGNHKVLIFTQMTRML 821

Query: 82  AR----------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
                                + ++     Q +N + +I +      S G G+NL  G +
Sbjct: 822 DILESFLNLHGYSYCRLDGSTSTEQRQLLTQRFNGDDRIFIFILSTRSGGFGINLT-GAD 880

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++F+   W+       +++    R  + G  R V +Y LI + TI+E +LQ+   K  +
Sbjct: 881 TVIFYDSDWNPA-----MDQQAQDRCHRIGQTRDVHIYRLIGEGTIEESILQKAIQKREL 935

Query: 191 QDLLLN 196
             + + 
Sbjct: 936 DSMAIQ 941


>gi|73946675|ref|XP_860860.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 34 [Canis familiaris]
          Length = 1548

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 953  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1012

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1013 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1072

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1073 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1128

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1129 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1177


>gi|291383316|ref|XP_002708231.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2-like isoform 2 [Oryctolagus
            cuniculus]
          Length = 1577

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 982  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1041

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1042 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1101

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1102 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1157

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|240281557|gb|EER45060.1| transcriptional accessory protein [Ajellomyces capsulatus H143]
          Length = 1913

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 61/250 (24%)

Query: 2    KQYHKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            K +  F ++   D+       +     +         +L N      +E H +       
Sbjct: 1584 KLFEDFTKKEQKDITKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKESHKQYDEIQKS 1643

Query: 52   ------------HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSD 80
                        H  K+ AL  ++                      +    +V       
Sbjct: 1644 LAAKNSHIRDVAHAPKLIALRDLLVDCGIGVDPSTEGELDTGASYVSPHRALVFCQMKEM 1703

Query: 81   LARLQKAF-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  +Q                       K    + ++N +    +L    +  G GLNL 
Sbjct: 1704 LDIVQNDVLKKLLPSVQFLRLDGSVEATKRQSIVNQFNTDPSYDVLLLTTSVGGLGLNLT 1763

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R 
Sbjct: 1764 -GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRF 1817

Query: 187  KSTIQDLLLN 196
            K  +   ++N
Sbjct: 1818 KIDVASTVVN 1827


>gi|321475222|gb|EFX86185.1| hypothetical protein DAPPUDRAFT_313238 [Daphnia pulex]
          Length = 1791

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 77/254 (30%), Gaps = 65/254 (25%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWK-EVHD 53
            +K Y  F ++   +L   +  +       +         ++ N        +H + EV  
Sbjct: 1465 VKLYEDFSKKH-AELNQTSQASASSPAHAHIFQALQYLRKVCNHPKLVLTPQHPQFEVFQ 1523

Query: 54   EKIKALEVIIEKANA-------------------------------------APIIVAYH 76
            + +K  +  +                                             ++   
Sbjct: 1524 QHLKDQKSNLSDLQHASKLLALKQLLLDCGIGLDTANGSIDSPDTGGSVVSIHRALIFCQ 1583

Query: 77   FNSDLARLQKAFPQGRTLD-------------KDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              S +  ++    +                       ++ +N +  I +L       G G
Sbjct: 1584 LRSMIDIIENDLLKTHMKTVSYLRLDGSIAAGSRQGVVKRFNEDPSIDVLLLTTQVGGLG 1643

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL  G + ++F    W+      M +   + R  + G K+ V VY LI + T++E ++ 
Sbjct: 1644 LNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMG 1697

Query: 183  RLRTKSTIQDLLLN 196
              + K    + +++
Sbjct: 1698 LQKFKLQTANTIIS 1711


>gi|331226428|ref|XP_003325884.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309304874|gb|EFP81465.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 1071

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 45/231 (19%)

Query: 6   KFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVH-------D 53
           K  +++   L+ E     +       +  ++  ++ N        +    +         
Sbjct: 491 KLSQQIRYALEAEEGSTNSQSYKKLLNLLMQLRKVCNHPYLMPNSEPEPFLIAEHIVNVS 550

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
            K+  L+ I++        +++   F S L  L+                  + +    I
Sbjct: 551 SKLVMLDKILKSELPKGKRLLIFSSFTSMLDILEDFLNLRQIDYLRLDGSTPVARRNLAI 610

Query: 102 QEWNEGK---------------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           + + + K               +P+      + G G+NL    + +V +   W+ +    
Sbjct: 611 RIFQQTKTMDTLKSHGSSSQRIVPIFLISTKAGGLGINLTA-ADTVVLYDSSWNPQ---- 665

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++   + R  + G  + V VY LI   +++  ++ RLR K  +   +L++
Sbjct: 666 -VDIQAIARAHRIGQTQNVTVYRLICAESVEHQMIGRLRKKLYLSLKILDS 715


>gi|195354154|ref|XP_002043565.1| GM19418 [Drosophila sechellia]
 gi|194127733|gb|EDW49776.1| GM19418 [Drosophila sechellia]
          Length = 882

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y     + +  L  +      +  +  +   +  N    +        +    I  + 
Sbjct: 521 KFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEAPISPSGIYEMN 580

Query: 61  VI---------------IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
            +               + K +   +++    +  L  L+                    
Sbjct: 581 SLTKASGKLVLLSKMLKLLKKDNHRVLLFSQMSKMLNILEHFLEGEGYQYDRIDGAIRGD 640

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N+      +      + G G+NL    + ++ F   W+        +    
Sbjct: 641 LRQKAIDRFNDPGSEQFVFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDVQAF 694

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G K+ V +Y  +  N+++E ++Q  + K  +  L++
Sbjct: 695 SRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKRKMMLTHLVV 736


>gi|118092869|ref|XP_421689.2| PREDICTED: similar to TBP-associated factor 172 [Gallus gallus]
          Length = 1865

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1544 VQLYEDFAKSRAKCDIDETVSSISLREETEKPKLKATGHVFQALQYLRKLCNHPALVLTT 1603

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1604 QHPEYKRITEQLAAHNSSLRDIQHAPKLSALKQLLLDCGLGNGGSSESGTEAVVAQHRIL 1663

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 1664 IFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHV 1723

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1724 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1777

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 1778 KIMGLQKFKMNIANTVIS 1795


>gi|321461550|gb|EFX72581.1| hypothetical protein DAPPUDRAFT_227473 [Daphnia pulex]
          Length = 1801

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 40/224 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++       G    A    +  ++  +  N A     +++ +       + L+ 
Sbjct: 693 KNYTALRK-------GNKGSASTFVNIVMELKKCCNHAFLTKPQENERRYGASATEQLQQ 745

Query: 62  IIE---------------KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------- 96
           +I                +     +++       L  + +         +          
Sbjct: 746 LIRGSGKLVLLDKLLVRLRETGHRVLIFSQMVRMLDLIAEYLQLRHFPFQRLDGGIKGEL 805

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N              + G G+NL    + ++ F   W+ +      +     
Sbjct: 806 RRKAMEHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQA 859

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 860 RAHRIGQKNQVNIYRLVTKASVEEDIVERAKRKMVLDHLVIQRM 903


>gi|330799785|ref|XP_003287922.1| hypothetical protein DICPUDRAFT_55110 [Dictyostelium purpureum]
 gi|325082056|gb|EGC35551.1| hypothetical protein DICPUDRAFT_55110 [Dictyostelium purpureum]
          Length = 1271

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 79/217 (36%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCD---LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y   + + +     L G    A    +  V+  ++ N    + +E++  + +  +   
Sbjct: 516 KMYDLIKDKGFTAGSGLDGNPKLAKGLKNTYVQLRKICNHPYLFYDEEYPIDDNLIRYAG 575

Query: 59  LEVIIE------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
              +++      KA    +++       +  L+  F                ++    +Q
Sbjct: 576 KFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYRDFKYLRLDGSTKSEERGPLLQ 635

Query: 103 EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N       +      + G GLNLQ   + ++ F   W+ +     ++     R  + G
Sbjct: 636 LFNAPNSEYFIFVLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRAHRIG 689

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V  L+  ++++E +L R   K  +   ++ A
Sbjct: 690 QKQTVRVLRLVTLHSVEENILARANFKKELDKKIIQA 726


>gi|302769197|ref|XP_002968018.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
 gi|300164756|gb|EFJ31365.1| hypothetical protein SELMODRAFT_440203 [Selaginella moellendorffii]
          Length = 1234

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY--------DEEKHWKE 50
           + QR  Y  L  ++I+A N+        +  ++  +  N    +                
Sbjct: 438 QMQRNYYKALLQKDIDAINTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTGEHLV 497

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
            +  K+  L+ ++ K       +++       L  L+               G + +   
Sbjct: 498 ENSGKMVLLDKLLPKLKQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDRE 557

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N       +      + G G+NL    +I++ +   W+ +     ++     R 
Sbjct: 558 FAIEAFNREGSEKFIFLLSTRAGGLGINL-ATADIVILYDSDWNPQ-----VDLQAQDRA 611

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    Q TI+E V++R   K  +  L++   +
Sbjct: 612 HRIGQKKEVQVFRFCTQYTIEEKVIERAYKKLALDALVIQQGR 654


>gi|254570084|ref|XP_002492152.1| Essential abundant protein involved in regulation of transcription
            [Pichia pastoris GS115]
 gi|238031949|emb|CAY69872.1| Essential abundant protein involved in regulation of transcription
            [Pichia pastoris GS115]
 gi|328351362|emb|CCA37761.1| TATA-binding protein-associated factor MOT1 [Pichia pastoris CBS
            7435]
          Length = 1937

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 75/265 (28%), Gaps = 76/265 (28%)

Query: 2    KQYHKFQREL-------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
            + Y  F ++          D   +     +         +L N        KH +     
Sbjct: 1590 QLYRDFAKKQKGTVEAEVKDANEKKESKQHIFQALQYMRKLCNHPALVVTPKHPQYADVQ 1649

Query: 52   --------------HDEKIKALEVIIEKA------------------------------- 66
                          H  K+ +L+ ++ +                                
Sbjct: 1650 AYLRDSKMDIRDIRHAPKLVSLKTLLLECGIGSSDENSEEGLGSSLRRQQQQLVTGSEGV 1709

Query: 67   -NAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPL 111
             +    ++       L                                ++++N +  I L
Sbjct: 1710 ISQHRALIFCQLKDMLDMVENDLLRKHMPSVTYMRLDGSTDPHSRQSIVRKFNEDPSIDL 1769

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L       G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI
Sbjct: 1770 LLLTTKVGGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLI 1823

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
             QNT++E ++   + K  I   ++N
Sbjct: 1824 TQNTLEERIMGLQKFKMNIASSVVN 1848


>gi|255726014|ref|XP_002547933.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
 gi|240133857|gb|EER33412.1| chromatin remodelling complex ATPase chain ISW1 [Candida tropicalis
           MYA-3404]
          Length = 1063

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q + Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 387 DMQVDWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 446

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                +  K+  L+ ++   KA  + +++             +               + 
Sbjct: 447 EHLVFNSGKMIILDKMLKKFKAEGSRVLIFSQMSRLLDILEDYCYFREYEYCRIDGSTSH 506

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 507 EDRIDAIDEYNSPDSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 560

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V VY  + +  I+E VL+R   K  +  L++   ++
Sbjct: 561 MDRAHRIGQKKQVKVYRFVTEMAIEEKVLERAAQKLRLDQLVIQQGRQ 608


>gi|19552947|ref|NP_600949.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390624|ref|YP_226026.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324512|dbj|BAB99136.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325962|emb|CAF20125.1| Superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 613

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 58/237 (24%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------------------- 50
           I A ++A+  +K LQ A GAVY D E   +                              
Sbjct: 382 ISAVHAATLRMKLLQYAGGAVYVDPEDSAQSQDLDASTARDVIDATNTAMTTITSRPTMI 441

Query: 51  VHDEKIKALEVIIEK-------------------ANAAPIIVAYHFNSDLARLQKAFPQG 91
           VH  K++ +  I+                         P +VAY F SD   L     Q 
Sbjct: 442 VHLHKVRKVIEILCNPALGGEPVNIDQDETGKQVYTPTPTLVAYRFISDKEILLHYLAQA 501

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   D  P  +  WN G+IP+L   PAS GHGLN Q+GG+ LV+++L  + E +  
Sbjct: 502 GVQGVEVFDGSPDMLSRWNAGRIPVLLLQPASAGHGLNFQHGGHRLVWYNLPDNNEHYM- 560

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                   R  + G K  V ++ +I  +T D  +   L  K+  Q  L++A++++ +
Sbjct: 561 ----QANARLHRIGQKNPVTIHRIITADTYDANMPAILAGKANRQQRLIDAVRRDPV 613


>gi|322503893|emb|CBZ38979.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1285

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
               K++ LE  +   +     +++   F   L  L++     G    +            
Sbjct: 867  DCGKLQFLETALKKMRDEGHRMLIFTQFVHMLNILERFLALIGIVYTRLDGSTKAELRQQ 926

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N + +I  +     S G GLNL  G + ++F+   W+       I+     R  +
Sbjct: 927  YVDRFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT-----IDLQAQDRCHR 980

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI+++T++E +L++ R +  + ++++
Sbjct: 981  IGQTRPVTIYRLISEHTVEESILEKARERKKLNNVVI 1017


>gi|294659915|ref|XP_462354.2| DEHA2G18722p [Debaryomyces hansenii CBS767]
 gi|199434332|emb|CAG90861.2| DEHA2G18722p [Debaryomyces hansenii]
          Length = 834

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           ++  + ++A N ++   +  +    +V   +          KIK +  I+        I+
Sbjct: 615 EICMKRLDANNQSTDGTRFCKACGESVKVPKHHEDDYYVSSKIKQVLEILMTNRDRKTII 674

Query: 74  AYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              F S              ++           ++       N+  + +L         G
Sbjct: 675 FSQFPSLFKVLGDTLSTKGFKILTYDGSMDIKARNFALNSLKNDPDMNVLLCSLKCGSVG 734

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + ++ F  WW+ +  +Q I+R+      + G  + V +Y L  +NT+++ +L+
Sbjct: 735 LNLT-CASQVILFDPWWNPQIQEQAIDRV-----YRIGQTKPVDIYELTVKNTVEDNILK 788

Query: 183 RLRTKSTIQDLL 194
             +TK  + + +
Sbjct: 789 LQKTKRQLANAV 800



 Score = 37.8 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K ++E     +  N+   ++    ++  QL        E+       + K+     
Sbjct: 538 KLKKE-ITQAKTGNVNYMSALVYLLRLRQLCCSWNLLFEDTEDSLNFEGKLTTSND 592


>gi|46128445|ref|XP_388776.1| hypothetical protein FG08600.1 [Gibberella zeae PH-1]
          Length = 2462

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDL-----------ARLQKAFPQ 90
             +    + +   KI+ L  I++ +      IV   F S L            R  +    
Sbjct: 2234 RDPNSPQVLASSKIRELIKILQNEVKEHKFIVFSQFTSMLNLVEPFFRKERFRFVRYDGS 2293

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  +++       ++ +  +L         GLNL      +V    +W+       +E 
Sbjct: 2294 MKNDEREESLRSLRSDPETRILLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVEE 2347

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
              + R  +      V +Y L   NT++E +L+    K  + +  +   ++KE + +
Sbjct: 2348 QAIDRVHRLTQTVDVIIYKLTVSNTVEERILELQDKKRELAEQAIEGGMRKEALKL 2403



 Score = 42.4 bits (98), Expect = 0.033,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 2    KQYHKFQRELYCDLQG----ENIEAFNSASKTVKCLQLANGAVYY 42
            K Y +        L+       +   N+ +  ++  Q  N     
Sbjct: 1888 KFYDRLAARADQSLEDQMLQGKVNYANALTLLLRLRQACNHPKLV 1932


>gi|327280078|ref|XP_003224781.1| PREDICTED: TATA-binding protein-associated factor 172-like [Anolis
            carolinensis]
          Length = 2315

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + A                +         +L N        
Sbjct: 1993 VQLYEDFAKSRAKCDVDETVSAVSLTEETEKTKLKATGHVFQALQYLRKLCNHPALVLTA 2052

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
             H +                   H  K+ AL+ ++                       I+
Sbjct: 2053 SHPEYKRITEKLAAENSSLRDIQHAPKLSALKQLLLDCGLGNGGSSENGTETVVAQHRIL 2112

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    +  +N +  I +L      
Sbjct: 2113 IFCQLKSMLDIVEHDLLKPHLPSITYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHV 2172

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+      M +   + R  + G KR V VY LI + T++E
Sbjct: 2173 GGLGLNLT-GADTVVFVEHDWNP-----MKDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 2226

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 2227 KIMGLQKFKMNIANTVIS 2244


>gi|322499392|emb|CBZ34465.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1126

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           + +        +++  +F   L  +                   + K    +  +N    
Sbjct: 801 DELKRNGERDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVPGS 860

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N L+ F   W+        +   + R  + G K+ VF+
Sbjct: 861 QEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKKRVFI 914

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L++  TI+E + QR  +K  +   +++
Sbjct: 915 YRLLSTGTIEEKIYQRQVSKQGLSANVVD 943


>gi|146087788|ref|XP_001465905.1| DNA repair and recombination protein RAD54 [Leishmania infantum
           JPCM5]
 gi|134070006|emb|CAM68336.1| putative DNA repair and recombination protein RAD54 [Leishmania
           infantum JPCM5]
          Length = 1126

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKI 109
           + +        +++  +F   L  +                   + K    +  +N    
Sbjct: 801 DELKRNGERDKLVIVSNFTQTLDIIAALCNSKQIAYFQLDGSTPIKKRQQLVDYFNVPGS 860

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N L+ F   W+        +   + R  + G K+ VF+
Sbjct: 861 QEIVFLLSSKAGGVGLNL-IGANRLILFDPDWNPAN-----DAQAMGRVWRDGQKKRVFI 914

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L++  TI+E + QR  +K  +   +++
Sbjct: 915 YRLLSTGTIEEKIYQRQVSKQGLSANVVD 943


>gi|326484392|gb|EGE08402.1| DNA repair and recombination protein RAD54 [Trichophyton equinum
           CBS 127.97]
          Length = 820

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 18/179 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
           + ++NG     E K W       +  +   I +     I++  ++   L   ++      
Sbjct: 555 MMVSNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARA 614

Query: 91  --------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      + K    + ++N+      +      + G G+NL  G N LV F   W+
Sbjct: 615 YGCIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWN 673

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               Q       + R  + G  +  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 674 PAADQ-----QALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 727


>gi|290983303|ref|XP_002674368.1| helicase-like protein [Naegleria gruberi]
 gi|284087958|gb|EFC41624.1| helicase-like protein [Naegleria gruberi]
          Length = 745

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           + Y+  + +    +    +   +    +  ++  ++ N      E +             
Sbjct: 451 EYYNAVKSKDLLPIFKDQKRANSTTLLNLLMQMRKICNHPFLLREFETKDSESESASNKR 510

Query: 52  -------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLA-----------RLQKAFPQG 91
                  +  K   L  ++E  K N   +++       L                     
Sbjct: 511 FLKECTQNSGKFGLLVKMLENLKKNGHKVLIFSLMTRFLDVLEDYLECRGDMKYCRIDGS 570

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +    I+E+N +  +        + G G+NL    + ++ +   W+ +     I+ 
Sbjct: 571 IAQTEREQKIKEFNQDEDVFCFLLSTRAGGLGINLTA-ADTVIIYDSDWNPQ-----IDL 624

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G KR+V ++ L+   T+++ VLQ    K  ++ L+++
Sbjct: 625 QAQDRCHRIGQKRSVRIFRLLTLGTVEKKVLQTATKKLKLERLIIH 670


>gi|196010103|ref|XP_002114916.1| hypothetical protein TRIADDRAFT_58909 [Trichoplax adhaerens]
 gi|190582299|gb|EDV22372.1| hypothetical protein TRIADDRAFT_58909 [Trichoplax adhaerens]
          Length = 1351

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 16/205 (7%)

Query: 3   QYHKFQRELYCDLQGENIEAFN------SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   Q++      G   +           +  ++  ++ N    +   +     H    
Sbjct: 790 LYDHMQKQGVLLTDGSEKDRKGHGGTKALMNTIMQLRKICNHPFLFQHIEEALSEHFGMK 849

Query: 57  KALEV--IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LL 112
             L    +I       + +   +                 +     +  +N    P  + 
Sbjct: 850 GGLVTGVLIFCQMTNLMTIMEDYLVWRGFRYLRLDGTTKAEDRGQLLALFNAENSPYFIF 909

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNLQ   + +V F   W+  +     +     R  + G +  V V  L+ 
Sbjct: 910 LLSTRAGGLGLNLQS-ADTVVIFDSDWNPHQ-----DLQAQDRAHRIGQQNEVRVLRLMT 963

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
             +++E +L   R K  + + ++ A
Sbjct: 964 VQSVEEKILAAARYKLNVDEKVIQA 988


>gi|194384656|dbj|BAG59488.1| unnamed protein product [Homo sapiens]
          Length = 979

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 33/194 (17%)

Query: 29  TVKCLQLANGAVYYD-------------EEKHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
            +   +  N    +               E         K+  L+ ++ K       +++
Sbjct: 1   MMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 60

Query: 74  AYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGH 121
                  L  L+          +              I  +N              + G 
Sbjct: 61  FSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGL 120

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL    + ++ F   W+        +    +R  + G    V +Y  + + +++E + 
Sbjct: 121 GINL-ATTDTVIIFDSDWNP-----HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERIT 174

Query: 182 QRLRTKSTIQDLLL 195
           Q  + K  +  L++
Sbjct: 175 QVAKRKMMLTHLVV 188


>gi|73946667|ref|XP_860732.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 31 [Canis familiaris]
          Length = 1548

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 951  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1010

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1011 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1070

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1071 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1126

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1127 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1175


>gi|28573600|ref|NP_788424.1| domino, isoform E [Drosophila melanogaster]
 gi|28380650|gb|AAM70872.2| domino, isoform E [Drosophila melanogaster]
          Length = 2497

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 1636 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 1695

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1696 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 1754

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1755 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1808


>gi|88319960|ref|NP_001034645.1| fibrinogen silencer-binding protein [Mus musculus]
 gi|51316246|sp|Q6PFE3|RA54B_MOUSE RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|34785459|gb|AAH57604.1| RIKEN cDNA E130016E03 gene [Mus musculus]
 gi|123227625|emb|CAM18403.1| RAD54 homolog B (S. cerevisiae) [Mus musculus]
          Length = 886

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 71/248 (28%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K  R +         +E            +L N           KE      +  
Sbjct: 534 IELYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKGKEFSSSCEENE 593

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLA- 82
           E  + +                                         +I+  ++   L  
Sbjct: 594 ERNLCQGLLSVFPAGYNPLQFSEEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNV 653

Query: 83  RLQKAFPQGRTLDK---------DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNI 131
             +     G    +             +  +N       +      + G GLNL  GG+ 
Sbjct: 654 LEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNL-IGGSH 712

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 713 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLS 767

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 768 GAVVDLTR 775


>gi|238878835|gb|EEQ42473.1| chromatin remodelling complex ATPase chain ISW1 [Candida albicans
           WO-1]
          Length = 1017

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEKH 47
            Q+ LY  +  ++I+A N             +  ++  +  N    +             
Sbjct: 374 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 433

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
               + +K+  L+ ++   +   + +++    +  L  L+                    
Sbjct: 434 HLVYNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHS 493

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 494 DRINAIDEYNKPGSEKFIFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAM 547

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +  I+E VL+R   K  +  L++   +
Sbjct: 548 DRAHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQQGR 593


>gi|73946621|ref|XP_859943.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 9 [Canis familiaris]
          Length = 1532

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 40/229 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +   + +    
Sbjct: 939  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVMVDPYWFVT 998

Query: 53   ----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                        K + L+ I+ K  A    +++     S +  ++  F            
Sbjct: 999  VINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDG 1058

Query: 91   GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +     ++++NE      +      + G GLNLQ   + +V F   W+  +     
Sbjct: 1059 TTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ----- 1112

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1113 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1161


>gi|255564822|ref|XP_002523405.1| Helicase, putative [Ricinus communis]
 gi|223537355|gb|EEF38984.1| Helicase, putative [Ricinus communis]
          Length = 2029

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +     K    +   K +    +I       + +   F +           
Sbjct: 1027 RLIQFDCGKLQ----KLAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDG 1082

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL +G + ++F+   W+       ++
Sbjct: 1083 STQPEQRQTLMQRFNTNPKIFLFILSTRSGGVGINL-FGADTVIFYDSDWNPA-----MD 1136

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1137 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 1184


>gi|260834763|ref|XP_002612379.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
 gi|229297756|gb|EEN68388.1| hypothetical protein BRAFLDRAFT_218963 [Branchiostoma floridae]
          Length = 1849

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 42/234 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVY----------------- 41
           K Y       +  L      + N     +  ++  +  N                     
Sbjct: 394 KYYRAILERNFTFLAKGCGSSSNVPNLMNTMMELRKCCNHPYLINGAEEKILGEYKDQHG 453

Query: 42  --YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
             + +  H       K+  ++ ++ K  A    +++       L  L+    Q     + 
Sbjct: 454 ENHGKYLHCMVQASGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLVQNVYPYER 513

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    + ++ F   W+ +   
Sbjct: 514 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN-- 570

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G  ++V VY L+ + T +  +  R   K  +   +L +++
Sbjct: 571 ---DLQAQARCHRIGQSKSVKVYRLLTRATYERDMFDRASLKLGLDKAVLQSMR 621


>gi|32563629|ref|NP_491994.2| hypothetical protein H06O01.2 [Caenorhabditis elegans]
 gi|25004979|emb|CAB07481.2| C. elegans protein H06O01.2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 1461

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 31/220 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE----------VH 52
           Y     + Y +L      + N      ++  +  N A    +  H  +            
Sbjct: 650 YKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKS 709

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++   K     +++       L  LQ+     R   +              
Sbjct: 710 SGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQA 769

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N              + G G+NL    + ++ F   W+ +      +   ++R  +
Sbjct: 770 LDHYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRAHR 823

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 824 IGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 863


>gi|325185489|emb|CCA19972.1| PREDICTED: similar to SWI/SNFrelated matrixassociated
           actindependent regulator of chromatin a2 isoform b
           isoform 10 putative [Albugo laibachii Nc14]
          Length = 1295

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 77/223 (34%), Gaps = 32/223 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYDEEKHWKEVHDE 54
            Y + Q+     L+ E  E  + A           ++  ++ N    +  + +  +    
Sbjct: 738 LYRRIQQGGAILLEQEGNEKSSKAKYTFKGLSNVLMQLRKVCNHPYLFQPQGYPIDFDLV 797

Query: 55  KIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           +      ++++           +++       +  L+  F              + D+  
Sbjct: 798 RSSGKFELLDRMLPKLKAAGHRVLMFSQMTQLMHILEDYFQYRSFTYLRLDGSTSADERE 857

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N    P  +      + G GLNL    + ++ F   W+       ++     R 
Sbjct: 858 QRMFMFNASDSPHFIFLLSTRAGGLGLNL-ATADTVIIFDSDWNPA-----MDAQAQDRA 911

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K  V V+ L+  + ++E +L R   K  + +L++ A K
Sbjct: 912 HRIGQKNEVRVFRLVTNSPVEEKILSRATNKLNMNNLVVEAGK 954


>gi|327307624|ref|XP_003238503.1| TBP associated factor Mot1 [Trichophyton rubrum CBS 118892]
 gi|326458759|gb|EGD84212.1| TBP associated factor Mot1 [Trichophyton rubrum CBS 118892]
          Length = 1903

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1583 QKEQKDIANKVGSSDKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSN 1642

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1643 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1702

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1703 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1761

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1762 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1816

Query: 194  LLN 196
            ++N
Sbjct: 1817 VVN 1819


>gi|301788109|ref|XP_002929471.1| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Ailuropoda melanoleuca]
          Length = 911

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVY------------------ 41
           ++ Y K    +         +             +L N                      
Sbjct: 557 IELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIKEKEYSSTWDGNE 616

Query: 42  --------------YDEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLAR 83
                               + E    K++ L  ++   +       +++  ++   L  
Sbjct: 617 ERSLYEGLVDVFPADYNPLMFMEEESGKLQVLMKLLAVIHELRPTEKVVLVSNYTQTLNI 676

Query: 84  -LQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
             +     G T  +             +  +N       +      + G GLNL  GG+ 
Sbjct: 677 LQEVCKRHGYTYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 735

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 736 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLS 790

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 791 GAVVDLTK 798


>gi|148673695|gb|EDL05642.1| mCG142038, isoform CRA_b [Mus musculus]
          Length = 886

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 71/248 (28%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K  R +         +E            +L N           KE      +  
Sbjct: 534 IELYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKGKEFSSSCEENE 593

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLA- 82
           E  + +                                         +I+  ++   L  
Sbjct: 594 ERNLCQGLLSVFPAGYNPLQFSEEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNV 653

Query: 83  RLQKAFPQGRTLDK---------DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNI 131
             +     G    +             +  +N       +      + G GLNL  GG+ 
Sbjct: 654 LEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNL-IGGSH 712

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 713 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLS 767

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 768 GAVVDLTR 775


>gi|296417472|ref|XP_002838381.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634311|emb|CAZ82572.1| unnamed protein product [Tuber melanosporum]
          Length = 1069

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 71/214 (33%), Gaps = 28/214 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKALEV 61
           +      G+        +  ++  +  N    +                 +  K+  L+ 
Sbjct: 372 DAVNGAGGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHIIDNSGKMVMLDK 431

Query: 62  II--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKI 109
           ++   KA  + +++    +  L                       +     I E+N+   
Sbjct: 432 LLKRMKAQKSRVLIFSQMSRQLDILEDYCVFREYPYCRIDGSTAHEDRITAIDEYNKPGS 491

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL    +I+V +   W+ +      +   + R  + G  + V V
Sbjct: 492 EKFIFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDRAHRIGQTKQVMV 545

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +  + +N I+E VL+R   K  +  L++   + +
Sbjct: 546 FRFVTENAIEEKVLERAAQKLRLDQLVIQQGRSQ 579


>gi|115634727|ref|XP_787293.2| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
 gi|115924449|ref|XP_001196643.1| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
          Length = 600

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 58/241 (24%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           K Y +F ++             N     ++  Q         E    +            
Sbjct: 369 KIYDQFLQQSR-----STSNKTNILVILLRLRQCCCHLSLLKELPDQESCEMDGIELDLV 423

Query: 53  -------------------DEKIKALEVIIEK-------ANAAPIIVAYHFNSDLARLQK 86
                                KIK +  ++EK             ++   +   L  ++ 
Sbjct: 424 RQMKEMGLGDMTLYPPSFLSTKIKFVINLLEKIRAAGPADRPEKSVLVSQWTGMLDVVEH 483

Query: 87  AFPQG----------RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVF 134
              +            + ++    ++++N       ++     + G  LNL  GGN L F
Sbjct: 484 HLKEAGFKCWSIDGDVSPNERDEALKDFNYNPRGRQIMLVSLRTGGATLNL-SGGNHLFF 542

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + W+     Q  +RI      + G  R V ++  I  +TI+  + +  + K  + + +
Sbjct: 543 LDMHWNPALEDQACDRI-----YRIGQTRKVHIHKFICSDTIEYRISELQKKKKKLANDV 597

Query: 195 L 195
           L
Sbjct: 598 L 598


>gi|270001259|gb|EEZ97706.1| brahma [Tribolium castaneum]
          Length = 1649

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1087 LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKYCDHVGIS 1146

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++       +  ++             
Sbjct: 1147 GGVISGPDLYRASGKFELLDRILPKLKVTGHRVLLFCQMTQLMTIMEDYLSWRGFGYLRL 1206

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++N              + G GLNLQ   + ++ F   W+  +   
Sbjct: 1207 DGTTKAEDRGDLLKKFNAKNSDYFLFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1262

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1263 --DLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1311


>gi|239611302|gb|EEQ88289.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1072

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD----- 95
            DE +    +   KI+ L  I++K +     IV   F S L +++               
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++    +  N  K  +L     +   GLNL    + +V    +W+       +E
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVE 936

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + R  +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 937 EQAIDRVHRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984



 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   + G+NI   ++    ++  Q  N     
Sbjct: 569 YKRLEQRTDKTLERMIGGDNINYASALVLLLRLRQACNHPDLV 611


>gi|224111230|ref|XP_002315787.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864827|gb|EEF01958.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1132

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKA 58
           Y +        L   + ++ +  + T++  +  N    +  + +            K + 
Sbjct: 673 YQQVTEMGRVGLHTGSGKSKSLQNLTMQLRKCCNHPYLFVGDYNMWRKDEIMRASGKFEL 732

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
           L+ ++ K +     +++       +  L+                    +    ++++N 
Sbjct: 733 LDRLLPKLHATDHRVLLFSQMTRLMDILEIYLQLHDYKYLRLDGSTKTEERGTLLKKFNA 792

Query: 107 GKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+ 
Sbjct: 793 PDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKKE 846

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +++E++L+R + K  I   ++ A
Sbjct: 847 VRVFVLVSVGSVEEVILERAKQKKGIDAKVIQA 879


>gi|210075955|ref|XP_504989.2| YALI0F04356p [Yarrowia lipolytica]
 gi|199424920|emb|CAG77796.2| YALI0F04356p [Yarrowia lipolytica]
          Length = 1242

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEVHDEKIKALEVI 62
            E    +  + I    + +      ++AN                        K++  + +
Sbjct: 963  EFLSTIAFDKISTSQTLAN---LRKVANSPYLVKFPWGEEEPVDERIISDSGKMRVFDQL 1019

Query: 63   IEK--ANAAPIIVAYHF----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
              +  +    ++V   F                          L++    I  +NE   P
Sbjct: 1020 AMELVSRKHKMLVFSQFSGTLDLLTEWCEFRHLPYCMLIGSMGLEERQEMIDAFNEESGP 1079

Query: 111  -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G G+NL    + +V F   W+ ++     ++  + R  + G K+   +Y 
Sbjct: 1080 SIFLITTRAGGTGINLTA-ADSVVIFDSDWNPQQ-----DKQAIDRSHRIGQKKPCVIYR 1133

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI+ NT++E++++    K  + ++++ A
Sbjct: 1134 LISTNTMEEMLVRVASDKKRLDEMVIQA 1161


>gi|309362352|emb|CAP28139.2| hypothetical protein CBG_08287 [Caenorhabditis briggsae AF16]
          Length = 1512

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
             Y   ++ L  D    +  A + ++  V   +L N    +   +     H          
Sbjct: 784  IYRHMKKGLLLD-AKASSGARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVNGKE 842

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K  A+   +++ +     +   +                   D+
Sbjct: 843  LMRVAGKLELLDRILPKLKASGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 902

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 903  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 957  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1001


>gi|73946673|ref|XP_860834.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 33 [Canis familiaris]
          Length = 1536

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 941  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1000

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1001 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1060

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1061 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1116

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1117 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1165


>gi|294140756|ref|YP_003556734.1| helicase, Snf2 family [Shewanella violacea DSS12]
 gi|293327225|dbj|BAJ01956.1| helicase, Snf2 family [Shewanella violacea DSS12]
          Length = 694

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 64/214 (29%), Gaps = 54/214 (25%)

Query: 29  TVKCLQLANGA--------------------------------------VYYDEEKHWKE 50
            +K  Q+                                          +   E+    +
Sbjct: 460 LLKLRQVCCHPKLLKLDHLQQSSQDNVYLDTGWDTSNIDVSHKLGSVNGLQLAEDVSKLD 519

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCT 100
               K+  L   +         +++   F S L  + +                      
Sbjct: 520 TRSGKLNWLADKLPGMLEEGRRVLIFSSFTSMLTLIGELLENLGISFVELTGKSRDRGAL 579

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ + + ++P+      + G GLNL    ++++    WW+    Q         R  + G
Sbjct: 580 VKRFQQREVPVFLISLKAGGAGLNLTA-ADVVIHTDPWWNPAAEQ-----QASDRAHRIG 633

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             ++VFVY LI + T++E +     +K+ +   +
Sbjct: 634 QDKSVFVYKLICKETVEERIQLLQESKNNLAQSI 667


>gi|146104782|ref|XP_001469910.1| helicase [Leishmania infantum]
 gi|134074280|emb|CAM73025.1| putative helicase [Leishmania infantum JPCM5]
          Length = 1285

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
               K++ LE  +   + +   +++   F   L  L++     G    +            
Sbjct: 867  DCGKLQFLETALKKMRDDGHRMLIFTQFVHMLNILERFLALIGIVYTRLDGSTKAELRQQ 926

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N + +I  +     S G GLNL  G + ++F+   W+       I+     R  +
Sbjct: 927  YVDRFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT-----IDLQAQDRCHR 980

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI+++T++E +L++ R +  + ++++
Sbjct: 981  IGQTRPVTIYRLISEHTVEESILEKARERKKLNNVVI 1017


>gi|109090006|ref|XP_001095492.1| PREDICTED: lymphoid-specific helicase isoform 11 [Macaca mulatta]
          Length = 805

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 531 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 590

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 591 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 650

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 651 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 704

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 705 AKRKLEKLIIH 715


>gi|123477045|ref|XP_001321692.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121904523|gb|EAY09469.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1425

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 72/233 (30%), Gaps = 43/233 (18%)

Query: 4   YHKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           Y  F  E    L  +       +  +  ++  ++ N                        
Sbjct: 499 YRAFLDENRDVLLSQITSGALPSLKNLMMQLRKVCNHPYLIKGATDTILEQFTKASPENT 558

Query: 52  ------------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF--------- 88
                          K+  ++ ++ K  A+   +++       L  L+            
Sbjct: 559 PKSDIELKALVQSSGKLILIDKLLPKLKADGHKVLIFSQMVKVLDILEDYIAIKGYKCER 618

Query: 89  -PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     I+ + N+    +      + G G+NL    + ++ +   W+ +    
Sbjct: 619 IDGSVAENDRQAAIERFGNDPDAFIFLLCTKAGGVGINLTA-ADTVIIYDSDWNPQN--- 674

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +    +R  + G  + V VY L+ + T +  +L R   K  +   LL++++
Sbjct: 675 --DIQAQSRCHRIGQTQKVKVYRLVTRGTYELDMLDRASKKLGLDHALLDSVE 725


>gi|296425383|ref|XP_002842221.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638482|emb|CAZ86412.1| unnamed protein product [Tuber melanosporum]
          Length = 1480

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 75/206 (36%), Gaps = 34/206 (16%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALEVIIEKANAAPIIVA 74
              ++  +       Y+E+   ++V                ++ +L +   K     +++ 
Sbjct: 976  LLMQLRKCLCHPFLYNEDIEEQDVDPETAHKNLVDAGSKLELLSLLLPKLKEKGHRVLMF 1035

Query: 75   YHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHG 122
              F   L              +    G +  +    I  +N              + G G
Sbjct: 1036 TQFLGMLDILEDFLFALDLKYQRLDGGVSTLERQKRIDSFNAPDSKYFAFMLSTRAGGVG 1095

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    + ++     ++  +     +   ++R  + G  + V V++L+ ++T +E ++Q
Sbjct: 1096 INL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQTKRVQVFHLVTRDTAEEKIIQ 1149

Query: 183  RLRTKSTIQDLLL---NALKKETIHV 205
              + K ++  L++   +A ++E + V
Sbjct: 1150 IGKKKLSLDHLIIEKMDATEEEEVDV 1175


>gi|194855230|ref|XP_001968500.1| GG24470 [Drosophila erecta]
 gi|190660367|gb|EDV57559.1| GG24470 [Drosophila erecta]
          Length = 1886

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 770 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 829

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 830 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 889

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 890 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 943

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 944 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|50312307|ref|XP_456186.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645322|emb|CAG98894.1| KLLA0F24838p [Kluyveromyces lactis]
          Length = 1062

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEK 46
             Q E Y  L  ++I+A N A              ++  +  N    +            
Sbjct: 375 DMQIEWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 434

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ +++K     + +++    +  L  L+                 + 
Sbjct: 435 EHLVFNSGKMIVLDKLLKKKKEQGSRVLIFSQMSRLLDILEDYCYFRGYEYCRIDGSTSH 494

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           D+    I E+N+      +      + G G+NL    + +V +   W+ +      +   
Sbjct: 495 DERVEAIDEYNKPNSEKFIFLLTTRAGGLGINLVT-ADTVVLYDSDWNPQA-----DLQA 548

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ VFVY  + +N I+E V++R   K  +  L++ 
Sbjct: 549 MDRAHRIGQKKQVFVYRFVTENAIEEKVIERAAQKLRLDQLVIQ 592


>gi|290997882|ref|XP_002681510.1| TATA-binding protein-associated factor 172 [Naegleria gruberi]
 gi|284095134|gb|EFC48766.1| TATA-binding protein-associated factor 172 [Naegleria gruberi]
          Length = 1788

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 50/236 (21%)

Query: 5    HKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVH----------- 52
             + + +     + + I    +         +L N      E  H                
Sbjct: 1485 QELKSQQEDKTKAKEISENSHVFKALKYLRKLCNHPCLVLEPDHPMYESVTQEIKQQGLD 1544

Query: 53   ------DEKIKALEVIIEKA------------NAAPIIVAYHFNSDLARLQKAFPQGRTL 94
                    K+ +L+ ++               N   +++       L  +Q         
Sbjct: 1545 VRDVNLSPKLLSLKQLLNDCGIGAGNSDVDSSNQHRVLIFCQLKQMLDIIQNELFAKYMP 1604

Query: 95   D-------------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +             K    + ++N +  I +L       G GLNL  G + ++F    W+
Sbjct: 1605 NVTFMRLDGDVETTKRYEIVTKFNSDPTIDVLLLTTKIGGLGLNLT-GADTVIFVEHDWN 1663

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                    +   + R  + G K+ V VY LI +NT++E ++   + K+ I   ++N
Sbjct: 1664 PSA-----DLQAMDRAHRIGQKKVVNVYRLITRNTLEEKIMGLQKFKTNISKSVIN 1714


>gi|242023203|ref|XP_002432025.1| DNA repair and recombination protein RAD54B, putative [Pediculus
           humanus corporis]
 gi|212517383|gb|EEB19287.1| DNA repair and recombination protein RAD54B, putative [Pediculus
           humanus corporis]
          Length = 840

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 26/223 (11%)

Query: 3   QYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIK 57
            Y+          + E  IE  +         ++ N     +++ ++ E        K+K
Sbjct: 511 MYNSLVNSFLNAKESEEFIEGSSHLELITSLKKICNYPSLLNKDDNYLEKIDIDTSGKLK 570

Query: 58  ALEVIIEKANAA----PIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQE 103
                +++         +++  +              L              +    +++
Sbjct: 571 VTVNFLKELQMTSVKEKVLIVSNATQTLNLLEKVFHVLNYSTCRLDGNTPSAQRNKIVED 630

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N  + + +      + G GLN+  G + L+ F   W+        +   ++R  + G K
Sbjct: 631 FNTSRDLFIFLLSSKAGGVGLNVT-GASRLILFDSDWNPAT-----DLQAISRIWRDGQK 684

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             VF+Y L+   TI+E + QR  +K  + +  ++    ++I +
Sbjct: 685 FPVFIYRLLTTGTIEEKIYQRQISKQGLCEGTVDPKSNKSIKL 727


>gi|121700154|ref|XP_001268342.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
 gi|119396484|gb|EAW06916.1| SNF2 family N-terminal domain protein [Aspergillus clavatus NRRL 1]
          Length = 682

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 384 LKAIGLLKKLCNHPDLLDLSRDLPGCEHTYPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 443

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                T++K    + ++N+   
Sbjct: 444 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMTVNKRQKLVDKFNDPNG 503

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 504 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 557

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 558 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 589


>gi|115472213|ref|NP_001059705.1| Os07g0497000 [Oryza sativa Japonica Group]
 gi|113611241|dbj|BAF21619.1| Os07g0497000 [Oryza sativa Japonica Group]
          Length = 622

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 79/227 (34%), Gaps = 33/227 (14%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHDEK 55
           + Y     + Y  L+  G+     +  +  ++  ++ N          E    + +H+ +
Sbjct: 226 EYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIPGTEPESGSPEFLHEMR 285

Query: 56  IK--------ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLD 95
           IK           + I   +   +++       L  L+                   ++ 
Sbjct: 286 IKASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKTFERVDGSVSVA 345

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I  +N+ K   +      SCG G+NL    + ++ +   ++        +   + 
Sbjct: 346 ERQAAIARFNQDKSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMN 399

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G    + VY L+ + +++E +L   + K  +  L +N  + +
Sbjct: 400 RAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKSESQ 446


>gi|281337385|gb|EFB12969.1| hypothetical protein PANDA_010298 [Ailuropoda melanoleuca]
          Length = 1583

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|302415028|ref|XP_003005346.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
 gi|261356415|gb|EEY18843.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
          Length = 969

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 33/221 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-----------EV 51
            Y +   E         ++  N      +     +    +   + +K            +
Sbjct: 733 LYDEL--ETMFKSGPSELQQPNMEHLIGELKN-CSDFELHLWCRDYKCLEGFDLPEGSWM 789

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHF----------NSDLARLQKAFPQGRTLDKDPC 99
              K+  +  +I +   N   ++V   F                         ++++   
Sbjct: 790 ESGKVTKMLELIHQYQANGDRVLVFSKFAKVIEILREVLHTDGIKHCVLYGATSVEERQG 849

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N    IP+      + G G+NL    N ++ F    + ++     +     R  +
Sbjct: 850 LINEFNENTDIPVFLLTTGAGGTGINLTS-ANKVIIFDQSDNPQD-----DIQAENRAHR 903

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  R V V  L+ + TI+EL+ +    K  + + +  A++
Sbjct: 904 LGQTRDVEVIRLLTRRTIEELIFKACEKKIELANKVTGAVE 944


>gi|195999278|ref|XP_002109507.1| hypothetical protein TRIADDRAFT_53614 [Trichoplax adhaerens]
 gi|190587631|gb|EDV27673.1| hypothetical protein TRIADDRAFT_53614 [Trichoplax adhaerens]
          Length = 619

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 55/242 (22%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEK 55
            +   +     ++         + N  V    EKH +                   H  K
Sbjct: 316 LEESKKEPSKMHAFQALQYLRLICNHPVLVLNEKHPQYYEITSRLSRENLELSSIQHSAK 375

Query: 56  IKALEVIIEKAN------------------AAPIIVAYHFNSDLARLQKAFPQGR----- 92
           + AL+ ++ +                        +V +   + +  +++   + +     
Sbjct: 376 LMALKQLLLECGIGIPTTNVASVSVMPVVAQHRALVFFQSKAMMKLVEEKLFKDKDSTVA 435

Query: 93  --------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   ++ +    +  +N +  I ++       G GLNL  G + ++F    W+   
Sbjct: 436 YVKLSGDVSIKERAEIVSRFNKDPSIDVMLLTTKVGGVGLNLT-GADTVIFVEHDWNP-- 492

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              M +   + R  + G K+ V VY LI +NT++E +L     KS I + +++      +
Sbjct: 493 ---MADAQAMDRAHRIGQKKVVNVYRLITRNTLEEKILGLQNFKSKIANTVISQENASLM 549

Query: 204 HV 205
            +
Sbjct: 550 SM 551


>gi|268553029|ref|XP_002634497.1| Hypothetical protein CBG08287 [Caenorhabditis briggsae]
          Length = 1480

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
             Y   ++ L  D    +  A + ++  V   +L N    +   +     H          
Sbjct: 784  IYRHMKKGLLLD-AKASSGARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVNGKE 842

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K  A+   +++ +     +   +                   D+
Sbjct: 843  LMRVAGKLELLDRILPKLKASGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 902

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 903  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 956

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 957  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1001


>gi|281344850|gb|EFB20434.1| hypothetical protein PANDA_017908 [Ailuropoda melanoleuca]
          Length = 1133

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 706 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 765

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 766 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 825

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 826 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 879

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 880 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 923


>gi|327271091|ref|XP_003220321.1| PREDICTED: DNA repair and recombination protein RAD54-like [Anolis
           carolinensis]
          Length = 906

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 82/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +F ++    +   E   + +S S      +L N      ++   +E          
Sbjct: 584 ELYKQFLKQAKPAEDLKEGKISVSSLSSITSLKKLCNHPALIHDKCVEEEEGFVGALKLF 643

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                          K+  L+ I+   +  +   +++  ++   L   +K          
Sbjct: 644 PPGYSTKSLEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYV 703

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 704 RLDGTMSIKKRAKVVEHFNSVSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 761

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 762 ----DEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 810


>gi|212534456|ref|XP_002147384.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
 gi|210069783|gb|EEA23873.1| dsDNA-dependent ATPase Rad54, putative [Penicillium marneffei ATCC
           18224]
          Length = 808

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 510 LKAIGLLKKLCNHPDLLDLARDLPGCEQYFPDDYVPPDGRGRDRDIKSWYSGKMMVLDRM 569

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N+   
Sbjct: 570 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVNKRQKLVDKFNDPNG 629

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 630 EEFIFLLSSKAGGCGINL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 683

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 684 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 715


>gi|125550816|gb|EAY96525.1| hypothetical protein OsI_18430 [Oryza sativa Indica Group]
          Length = 1088

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 26/213 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKA 58
           Y +        L           + +++  +  N    + E  +  +         K + 
Sbjct: 653 YEQVTSNGRVSLGSGLKSKA-LQNLSMQLRKCCNHPYLFVEHYNMYQRQEIVRSSGKFEL 711

Query: 59  LEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWN- 105
           L+ ++ K       +++                               ++    + ++N 
Sbjct: 712 LDRLLPKLQRAGHRVLLFSQMTKLLDILEVYLQIYQFKYMRLDGSTKTEERGRLLADFNK 771

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  L      + G GLNLQ   + ++ F   W+ +     +++    R  + G K  
Sbjct: 772 KDSEYFLFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKNE 825

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +I+E +L R + K  I   ++ A
Sbjct: 826 VRVFVLVSVGSIEEEILDRAKQKMGIDAKVIQA 858


>gi|312383263|gb|EFR28419.1| hypothetical protein AND_03670 [Anopheles darlingi]
          Length = 814

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 68/211 (32%), Gaps = 42/211 (19%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK------------------------IK 57
              + S      +L N      ++        EK                        + 
Sbjct: 458 TLTALSNITTLKKLCNHPDLVYDKIQEGADGFEKAGNILPANYSPRELRPELGAKLLLLD 517

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
            +   I+      I++  ++   L   +K   +            T+ K    + ++N  
Sbjct: 518 CMLASIKTNTNDKIVLVSNYTQTLDLFEKLCRKRGYGYVRLDGTMTIKKRGKVVDQFNSP 577

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N LV F   W+        +   + R  + G K+  
Sbjct: 578 DSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRDGQKKPC 631

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           F+Y L+A  +I+E + QR   K  +   +++
Sbjct: 632 FIYRLLATGSIEEKIFQRQTHKKALSTTVVD 662


>gi|157119050|ref|XP_001659312.1| E1a binding protein P400 [Aedes aegypti]
 gi|108883212|gb|EAT47437.1| E1a binding protein P400 [Aedes aegypti]
          Length = 3081

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 70/179 (39%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ L+ ++++  +    +++       L  L+    
Sbjct: 1602 LHPIISAMSTQFPDPRLIQYDCGKLQTLDRLLKQLKSGGHRVLIFTQMTRMLDVLEAFLN 1661

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + ++ +      S G G+NL  G + ++F+   
Sbjct: 1662 YHGHIYLRLDGTTKVEQRQLLMERFNGDKRVFVFILSTRSGGVGINLT-GADTVIFYDSD 1720

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1721 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEENILKKANQKRMLGDLAIEG 1774


>gi|73946665|ref|XP_860704.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 30 [Canis familiaris]
          Length = 1533

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 936  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 995

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 996  NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1055

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1056 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1111

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1112 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1160


>gi|259485020|tpe|CBF81736.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 833

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + + W       +  +
Sbjct: 535 LKAIGILKKLCNHPDLLNLSTDLPGCEHAFPDDYVPVEARGRDRDVRPWYSGKMMVLDRM 594

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 + K    + ++N+   
Sbjct: 595 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDPDG 654

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 655 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 708

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 709 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 740


>gi|71681342|gb|AAI00395.1| Helicase, lymphoid specific [Mus musculus]
          Length = 821

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       ++V   
Sbjct: 547 MMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQ 606

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    I  +N +  + L      + G G+NL
Sbjct: 607 MTSMLDILMDYCHPRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINL 666

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 667 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 720

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 721 AKRKLEKLIIH 731


>gi|194754060|ref|XP_001959323.1| GF12812 [Drosophila ananassae]
 gi|190620621|gb|EDV36145.1| GF12812 [Drosophila ananassae]
          Length = 3199

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 72/197 (36%), Gaps = 19/197 (9%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
            ++  E         K      + +       +    +    K++ L+ ++ +  A+   +
Sbjct: 1621 EMAIEERVGREVLPKLALLHPIISAMRTQFPDPRLIQYDCGKLQTLDRLLRQLKADGHRV 1680

Query: 72   IVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCG 120
            ++       L  L+        +           +    ++ +N + +I        S G
Sbjct: 1681 LIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQMHMERFNGDKRIFCFILSTRSGG 1740

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +
Sbjct: 1741 VGINL-MGADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNI 1794

Query: 181  LQRLRTKSTIQDLLLNA 197
            L++   K  + D+ +  
Sbjct: 1795 LKKANQKRMLSDMAIEG 1811


>gi|73946657|ref|XP_860572.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 26 [Canis familiaris]
          Length = 1498

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 903  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 962

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 963  NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1022

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1023 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1078

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1079 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1127


>gi|312211525|emb|CBX91610.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1473

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 18/170 (10%)

Query: 43   DEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
             E      V   KI+ L  I+ ++     +IV   F S L  ++    +           
Sbjct: 1237 PEYDASDLVPSTKIRQLLSILEKETPEHKVIVFSQFTSMLDLIEPFLKRADYNFTRYDGS 1296

Query: 96   -----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                 ++    +  N+ +  +L         GLNL    + +V    +W+       +E 
Sbjct: 1297 MRNDLREASLAKLRNDKRTRVLLCSLKCGSLGLNLTA-ASRVVIMEPFWNP-----FVEE 1350

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + R  +      V VY L+  N+++E + +    K  + +  +   K 
Sbjct: 1351 QAIDRVHRLNQTVDVTVYRLLINNSVEERIQELQEAKRKLANAAIEGGKA 1400



 Score = 39.0 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 4/40 (10%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGA 39
           Y +        L     GE  +   +    ++  Q  N  
Sbjct: 935 YDRLSDRAQSRLDEMMGGEKQDYIGALVLLLRLRQACNHP 974


>gi|189206215|ref|XP_001939442.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975535|gb|EDU42161.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1271

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 37/224 (16%)

Query: 7   FQRELYC-DLQGENIEA---FNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDEK 55
             +E    +    +I         +  ++  +  +                        K
Sbjct: 599 IVKEALSKEQTDSSINKGAWKKLMNLVMQLRKCCSHPYQLPGVAPDPYYLGDHIIRASGK 658

Query: 56  IKALEVIIEKA---NAAPIIVAYHFNSDLAR---------------LQKAFPQGRTLDKD 97
              LE +++         +++   F   L                          +  + 
Sbjct: 659 FILLEKLLKHTVFAQGKKVLIFSSFTRTLDHCEDLLSLISNHGERFKSLRLDGSTSRARR 718

Query: 98  PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I+ +N+      ++     + G G+NL      ++F    W+ +            R
Sbjct: 719 NLDIRLFNQKGSDYKVMLLSTRAGGLGINLTS-AEDVIFLDEDWNPQITL-----QAEAR 772

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V +Y L  Q T++E ++ R+R K  +   +  +++
Sbjct: 773 AHRIGQTKKVTIYKLCTQGTVEEQMMGRIRKKLYLSAKITESMQ 816


>gi|296414553|ref|XP_002836963.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632810|emb|CAZ81154.1| unnamed protein product [Tuber melanosporum]
          Length = 1645

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            +K +  I+E      ++ +  +             G    K    + ++N +  I +L  
Sbjct: 1439 LKEMLDIVENDVLKKLLPSVSYLRM--------DGGTEARKRQDIVTKFNGDPSIDVLLL 1490

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+ ++         + R  + G K+ V VY L+ + 
Sbjct: 1491 TTHVGGLGLNLT-GADTVIFVEHDWNPQKDM-----QAMDRAHRIGQKKVVNVYRLVTRG 1544

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   R K  +   ++N
Sbjct: 1545 TLEEKIMSLQRFKLDVASTVVN 1566


>gi|303275450|ref|XP_003057019.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226461371|gb|EEH58664.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 665

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFF 135
           F S    +      G   +     + ++N      +      + G GLN+    N +V F
Sbjct: 517 FLSRRGYVYCRLDGGTAQNARQPLVDDFNNSSSMFVFLLSTKAGGVGLNITS-ANRVVVF 575

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+        +     R  + G +R V VY  IA +TI+E+V QR   K    ++ +
Sbjct: 576 DPDWNPAL-----DLQAQDRAYRIGQRRDVNVYRFIAADTIEEIVYQRQVYKQQQSNVAV 630

Query: 196 NALKKE 201
           +A+++ 
Sbjct: 631 DAVRER 636


>gi|109090000|ref|XP_001095601.1| PREDICTED: lymphoid-specific helicase isoform 12 [Macaca mulatta]
          Length = 883

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 609 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 668

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 669 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 728

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 729 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 782

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 783 AKRKLEKLIIH 793


>gi|296220832|ref|XP_002756504.1| PREDICTED: lymphoid-specific helicase isoform 6 [Callithrix
           jacchus]
          Length = 821

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 547 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 606

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 607 MTSMLDILMDYCHLRNFNFSRLDGSMSYSERERNMHSFNTDPEVFIFLVSTRAGGLGINL 666

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 667 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 720

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 721 AKRKLEKLIIH 731


>gi|221117281|ref|XP_002154909.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 765

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 29  TVKCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIE--KANAAPIIVAYH 76
            ++  +  N     +                     K+  L+ I+   K+N   +++   
Sbjct: 505 MMQLRKCCNHPYLLEYPLDPKTQELVIDENIIKTSGKMLLLDKILPALKSNGHKVLIFSQ 564

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               +  LQ                   LD+     +  ++ ++ +      + G GLNL
Sbjct: 565 MTQMMDILQDYCYLRGYGYCRIDGTMSVLDRQENIKKFTDDKELFIFLLSTRAGGLGLNL 624

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               +  + +   W+ +     ++     R  + G  + V +Y  +  NTID+ +++R  
Sbjct: 625 -MMADTCIIYDSDWNPQ-----VDLQAQDRCHRIGQTKPVVIYRFVTANTIDQKIIERAA 678

Query: 186 TKSTIQDLLLNA 197
            K  ++ ++++ 
Sbjct: 679 CKRKLEKMVIHE 690


>gi|71019185|ref|XP_759823.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
 gi|46099621|gb|EAK84854.1| hypothetical protein UM03676.1 [Ustilago maydis 521]
          Length = 1060

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 51/242 (21%)

Query: 1   MKQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGA------------------- 39
           ++ Y       ++   LQG      N   +     +L N                     
Sbjct: 606 LRIYQAILGSSQVRSLLQGAP---GNGLLQIGVLRKLCNSPELLLKDTEADADSPTKALV 662

Query: 40  -----VYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQG 91
                 +       +     K+  +  +++         +++  +F S L  ++    + 
Sbjct: 663 GDLTRFFPPNFVRNEARFGGKLICVMNLLQTVRAQTDDKVVLVSNFTSTLDIIEAMMRKK 722

Query: 92  R----------TLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           R            D+    + ++N   +    +      S G GLNL  G N LV     
Sbjct: 723 RYPYLRLDGKTPQDERMAMVNQFNREGVDKSFVFLLSAKSGGVGLNL-IGANRLVLIDSD 781

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+        +   + R  + G K+  ++Y L+   T+DE + QR  +K  + D L+NA 
Sbjct: 782 WNPST-----DLQAMARIHRDGQKKPCYIYRLLLSGTMDEKIYQRQISKLGLSDSLMNAE 836

Query: 199 KK 200
           KK
Sbjct: 837 KK 838


>gi|226706292|sp|B0R0I6|CHD8_DANRE RecName: Full=Chromodomain-helicase-DNA-binding protein 8;
            Short=CHD-8; AltName: Full=ATP-dependent helicase CHD8
          Length = 2511

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 43/234 (18%)

Query: 2    KQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y       +  L      N    N  +  ++  +  N        +            
Sbjct: 1095 KYYRAILERNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYD 1154

Query: 52   -------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                            K+  L+ ++   KA    +++       L  L+      R L +
Sbjct: 1155 PLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYE 1214

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL    +  V F   W+ +  
Sbjct: 1215 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCVIFDSDWNPQN- 1272

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                +     R  + G  +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 1273 ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1322


>gi|320169022|gb|EFW45921.1| chromodomain-helicase-DNA-binding protein 7 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 2669

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 68/232 (29%), Gaps = 43/232 (18%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L       +  +  +  ++  +  N        +             
Sbjct: 1158 KYYQAILGRNFEFLAKGCNKNDMPSLMNIVMELRKCCNHPYLIGGAEEKILGEIYGPNFY 1217

Query: 53   --------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                            K+  ++ ++++   N   +++       L  LQ      +   +
Sbjct: 1218 STSPATLLLTLIQASGKLVLIDKLLKRLRENGHKVLIFSQMVRCLDILQDYLTAMQYKFE 1277

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL    + ++ +   W+ +  
Sbjct: 1278 RIDGGIRGEARQAAIDRFSKPGSDSFVFLLCTRAGGVGINLTA-ADTVIIYDSDWNPQN- 1335

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +     R  + G  ++V +Y L+ +N+ +  +  +   K  +   +L 
Sbjct: 1336 ----DLQAQARCHRIGQTKSVKIYRLLTRNSYEREMFDKASMKLGLDQAVLQ 1383


>gi|145342259|ref|XP_001416174.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
 gi|144576399|gb|ABO94467.1| Swr1-Pie_related helicase [Ostreococcus lucimarinus CCE9901]
          Length = 1053

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
           +        +       +  +K   +    K++ L  ++ K   +    ++       L 
Sbjct: 782 ALGLMAPIRKFVARQSMFVPDKRLVQFDCGKLQILATLLRKLKQDGHKALIFTQMTKMLD 841

Query: 83  ----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                                 ++    +Q +N + ++ +      S G G+NL  G + 
Sbjct: 842 VLEAFLNLHGYTYCRLDGSTGAEQRQLLMQRFNSDKRLFVFILSTRSGGFGINLT-GADT 900

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+       +++    R  + G  R V +Y LI++ TI+E +LQ+   K  + 
Sbjct: 901 VIFYDSDWNPA-----MDQQAQDRCHRIGQTREVHIYRLISEGTIEESILQKAVQKRELD 955

Query: 192 DLLLN 196
           ++ + 
Sbjct: 956 NMAIQ 960


>gi|241999570|ref|XP_002434428.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497758|gb|EEC07252.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 3286

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 39/227 (17%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            K Y       +  L    I     N  +  ++  +           +             
Sbjct: 1161 KYYRAILERNFAFLTKGGIGTNVPNLMNTMMELRKCCIHPYLIKGAEEQILQEYRLQHGE 1220

Query: 53   ------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
                          K+  L+ ++   K     ++V       L  L+      R L    
Sbjct: 1221 SLELALNALVQASGKLVLLDKLLPRLKDGGHRVLVFSQMVRCLDLLEDYLVHKRYL---- 1276

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 +      +      + G G+NL    + +V F   W+ +      +     R  +
Sbjct: 1277 EYSDRF------VFLLCTRAGGLGINLTA-ADTVVIFDSDWNPQN-----DLQAQARCHR 1324

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             G  +AV VY LI +NT +  +  +   K  +   +L +L  +  +V
Sbjct: 1325 IGQSKAVKVYRLICRNTYEREMFDKASLKLGLDRAVLQSLNAQKENV 1371


>gi|213983091|ref|NP_001135693.1| helicase, lymphoid-specific [Xenopus (Silurana) tropicalis]
 gi|197246289|gb|AAI69179.1| Unknown (protein for MGC:189674) [Xenopus (Silurana) tropicalis]
 gi|197246404|gb|AAI68798.1| Unknown (protein for MGC:188967) [Xenopus (Silurana) tropicalis]
          Length = 840

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                     K   L+ ++ +       +++   
Sbjct: 569 MMLLRKCCNHPYLIEYPLDPLTQDFKIDEELVNSSGKFLLLDRLLPEMKKRGHKVLIFSQ 628

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +       ++++N E  + +      + G G+NL
Sbjct: 629 MTMMLDILMDYCYYKKFNFCRLDGSMSYSDREENMRKFNTEPDVFIFLVSTRAGGLGINL 688

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  R V VY L+  NTID+ +++R  
Sbjct: 689 TA-ADTVIIYDSDWNPQA-----DLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAA 742

Query: 186 TKSTIQDLLLNALK 199
            K  ++ L+++  K
Sbjct: 743 AKRKLEKLVIHKNK 756


>gi|195470933|ref|XP_002087761.1| GE14968 [Drosophila yakuba]
 gi|194173862|gb|EDW87473.1| GE14968 [Drosophila yakuba]
          Length = 1883

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 769 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 828

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 829 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 888

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 889 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 942

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 943 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 987


>gi|326926799|ref|XP_003209584.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Meleagris gallopavo]
          Length = 1837

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 729 KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQS 788

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 789 LIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 848

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 849 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 902

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 946


>gi|303388827|ref|XP_003072647.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
 gi|303301788|gb|ADM11287.1| Mot1 helicase-like protein [Encephalitozoon intestinalis ATCC 50506]
          Length = 1257

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 82/223 (36%), Gaps = 32/223 (14%)

Query: 2    KQYHKF------QRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDE 54
            K Y +       ++    DL+   I+  N   K  +  L   +   ++ +          
Sbjct: 1029 KLYREINERGGKEKLEDVDLEYGKIDQKNVGFKRTRDLLLAVSHMSHFKDSSEV----SC 1084

Query: 55   KIKALEVIIEKANAA----PIIVAYHFNS--DLARLQKAFPQGRTLDK---------DPC 99
            K+KALE II           I++ + F S  D               +            
Sbjct: 1085 KVKALEDIISLCGGEDLRSKILIFFQFKSSIDFVIKDIMEKYKFKYSRLDGSVPSSTRAK 1144

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +E+N G   +LF      G GLNL  G + +V +   W+        +   + R  + 
Sbjct: 1145 IAEEFNTGTTQILFLTTQVGGLGLNLT-GADTVVMYEHDWNP-----FNDLQAMDRAHRI 1198

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G KR V V+ LIA+NT++E V+     K  + + L++    + 
Sbjct: 1199 GQKRTVNVFRLIAKNTLEEKVMNLQSFKMFVANSLVSQQNADI 1241


>gi|170087336|ref|XP_001874891.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
 gi|164650091|gb|EDR14332.1| DNA repair protein, SNF2 family [Laccaria bicolor S238N-H82]
          Length = 816

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 48/219 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
                        +L N     D     K                               
Sbjct: 514 TTSQPLKAINILKKLCNHPELLDLPDDLKGCDHLIPEGFSSTAARSRGKGGKQTVRCDWG 573

Query: 54  EKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
            K   LE  + +        I++  ++   L   +K                T+ K    
Sbjct: 574 GKFLVLERFLHQIKTQTTDKIVLISNYTQTLDLFEKLCRSKKYGFFRLDGSMTIVKRQKL 633

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           + ++N+      +      + G G+NL  G N L+ F   W+    Q       + R  +
Sbjct: 634 VDQFNDPDGKEFIFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ-----QALARVWR 687

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+  FVY  I+  TI+E + QR   K  +   +++ 
Sbjct: 688 DGQKKECFVYRFISTGTIEEKIFQRQANKQALSSAVVDE 726


>gi|119570415|gb|EAW50030.1| helicase, lymphoid-specific, isoform CRA_e [Homo sapiens]
          Length = 432

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 158 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 217

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 218 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 277

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 278 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 331

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 332 AKRKLEKLIIH 342


>gi|218197912|gb|EEC80339.1| hypothetical protein OsI_22408 [Oryza sativa Indica Group]
          Length = 4284

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
             Y K   +   +  G    ++  +  +  ++   + N            E +        
Sbjct: 1240 AYQKLLIKRVEENLGGIGAVKVRSVHNTVMELRNICNHPYLSQLHVEEIEGYLPRHYLPS 1299

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ ++ K       +++       L  ++                 +  +
Sbjct: 1300 ILRLCGKLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQE 1359

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I ++N       +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1360 RGALIDKFNNPNSQAFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1413

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V  L    T++E V      K  + +  + A
Sbjct: 1414 RAHRIGQKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1456


>gi|115400547|ref|XP_001215862.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191528|gb|EAU33228.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1087

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
               E     +   KI+ L  I+  ++     IV   F S L +++    +         
Sbjct: 835 LNPGEGENDILPSTKIRHLMKILRRESADHKFIVFSVFTSMLDKIEPFLKRAGIGFARYD 894

Query: 91  --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 895 GGMRNDLREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 948

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           E   + R  +      V +Y LI ++T++E +L     K  + ++ +  
Sbjct: 949 EEQAIDRVHRLNQTLDVKIYKLIIKDTVEERILDLQDRKRELANVTIEG 997



 Score = 38.2 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    G  ++   +    ++  Q  N     
Sbjct: 594 MNFYKRLEQRTENSLEKMMGGSKLDYAGALVLLLRLRQSCNHPDLV 639


>gi|52076407|dbj|BAD45237.1| putative STH1 protein [Oryza sativa Japonica Group]
          Length = 3389

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
             Y K   +   +  G    ++  +  +  ++   + N            E +        
Sbjct: 1270 AYQKLLIKRVEENLGGIGAVKVRSVHNTVMELRNICNHPYLSQLHVEEIEGYLPRHYLPS 1329

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ ++ K       +++       L  ++                 +  +
Sbjct: 1330 ILRLCGKLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQE 1389

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I ++N       +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1390 RGALIDKFNNPNSQAFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1443

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V  L    T++E V      K  + +  + A
Sbjct: 1444 RAHRIGQKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1486


>gi|194205835|ref|XP_001502330.2| PREDICTED: helicase, lymphoid-specific isoform 2 [Equus caballus]
          Length = 808

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 534 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQ 593

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    +  +N +  + +      + G G+NL
Sbjct: 594 MTRMLDILMDYCHFRDFNFSRLDGSMSYSEREKNMHNFNTDPDVFIFLVSTRAGGLGINL 653

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 654 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 707

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 708 AKRKLEKLIIH 718


>gi|302504353|ref|XP_003014135.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
 gi|291177703|gb|EFE33495.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
          Length = 790

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           ++NG     E K W       +  +   I +     I++  ++   L   ++        
Sbjct: 527 VSNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYG 586

Query: 91  ------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + K    + ++N+      +      + G G+NL  G N LV F   W+  
Sbjct: 587 CIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPA 645

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q       + R  + G  +  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 646 ADQ-----QALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 697


>gi|330913020|ref|XP_003296155.1| hypothetical protein PTT_05138 [Pyrenophora teres f. teres 0-1]
 gi|311331916|gb|EFQ95739.1| hypothetical protein PTT_05138 [Pyrenophora teres f. teres 0-1]
          Length = 1131

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           ++ Y K   +    + G            +  ++  +  N    +               
Sbjct: 443 VQWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 502

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKD 97
             +  K+  L+ ++   KA  + +++    +                          +  
Sbjct: 503 VTNAAKMVMLDKLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGSTAHEDR 562

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      L      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 563 IQAIDDYNKEGSEKFLFLLTTRAGGLGINLTS-ADIVVLFDSDWNPQA-----DLQAMDR 616

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V+V+  + +  I+E VL+R   K  +  L++   +
Sbjct: 617 AHRIGQTKQVYVFRFVTEMAIEEKVLERAAQKLRLDQLVIQQGR 660


>gi|261205500|ref|XP_002627487.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239592546|gb|EEQ75127.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1072

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD----- 95
            DE +    +   KI+ L  I++K +     IV   F S L +++               
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++    +  N  K  +L     +   GLNL    + +V    +W+       +E
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVE 936

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + R  +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 937 EQAIDRVHRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984



 Score = 39.0 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   + G+NI   ++    ++  Q  N     
Sbjct: 569 YKRLEQRTDKTLERMIGGDNINYASALVLLLRLRQACNHPDLV 611


>gi|118095916|ref|XP_413879.2| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Gallus gallus]
          Length = 1837

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 729 KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQS 788

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 789 LIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 848

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 849 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 902

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 946


>gi|17137266|ref|NP_477197.1| Chromodomain-helicase-DNA-binding protein 1 [Drosophila
           melanogaster]
 gi|75009913|sp|Q7KU24|CHD1_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase Chd1
 gi|7295870|gb|AAF51170.1| Chromodomain-helicase-DNA-binding protein 1 [Drosophila
           melanogaster]
          Length = 1883

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 770 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 829

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 830 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 889

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 890 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 943

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 944 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|316963964|gb|EFV49303.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 1024

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 21/180 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                E    E    K+++L  ++   +A     ++       L  L+        +   
Sbjct: 610 RLCFPELRLIEYDCGKLQSLSALLRRLQAEGHRCLIFTQMARMLDILEAFLSYHGYMYLR 669

Query: 96  --------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +    ++ +N + KI        S G G+NL  G + ++F+   W+      
Sbjct: 670 LDGATNIERRQMLMERFNHDKKILCFILSTRSGGVGVNLT-GADTVIFYDSDWNPT---- 724

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
            ++     R  + G  R V +Y LI + TI+E +L +   K  + +L ++    K +  H
Sbjct: 725 -MDAQAQDRCHRIGQTRDVHIYRLICERTIEENILLKATQKRKLGELAIDEGGFKADFFH 783


>gi|307189408|gb|EFN73818.1| Putative DNA helicase Ino80 [Camponotus floridanus]
          Length = 1624

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
             K+  L+ ++   K     +++       +  L++                +  D+    
Sbjct: 1078 GKLSVLDSLLRRLKEQGHRVLIYSQMTKMIDLLEEYMYHRKHTFMRLDGSSKISDRRDMV 1137

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                    I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1138 ADFQKRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1191

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1192 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1228


>gi|301767448|ref|XP_002919141.1| PREDICTED: probable global transcription activator SNF2L2-like
            [Ailuropoda melanoleuca]
          Length = 1546

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 933  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 992

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 993  NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1052

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1053 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1108

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1109 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1157


>gi|91081375|ref|XP_972116.1| PREDICTED: similar to helicase [Tribolium castaneum]
 gi|270005181|gb|EFA01629.1| hypothetical protein TcasGA2_TC007199 [Tribolium castaneum]
          Length = 1011

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYYD--EEKHWKEVHDE 54
           K QRE Y  +  ++I+  N A K          ++  + +N    +D  E        + 
Sbjct: 362 KMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH 421

Query: 55  KIKALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
            +     ++             + +++       L  L+      +            + 
Sbjct: 422 LVYNCGKMVLLDKLLPKLKEQDSRVLIFSQMTRMLDILEDYCHWRQYNYCRLDGQTPHED 481

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I E+NE      +      + G G+NL    ++++ +   W+ +     ++   + 
Sbjct: 482 RQRQINEYNEPNSSKFIFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ-----MDLQAMD 535

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 536 RAHRIGQKKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQQGR 580


>gi|9956001|gb|AAG01987.1| similar to Mus musculus lymphocyte specific helicase mRNA with
           GenBank Accession Number U25691.1 [Homo sapiens]
 gi|21410637|gb|AAH31004.1| HELLS protein [Homo sapiens]
 gi|21411296|gb|AAH30963.1| HELLS protein [Homo sapiens]
          Length = 348

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 74  MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 133

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 134 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 193

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 194 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 247

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 248 AKRKLEKLIIH 258


>gi|1448983|gb|AAC37264.1| chromodomain-helicase-DNA-binding protein [Drosophila melanogaster]
          Length = 1883

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 770 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 829

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 830 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 889

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 890 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 943

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 944 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|45199055|ref|NP_986084.1| AFR537Wp [Ashbya gossypii ATCC 10895]
 gi|44985130|gb|AAS53908.1| AFR537Wp [Ashbya gossypii ATCC 10895]
          Length = 1025

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 39/224 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYYD--EEKHWKEVH 52
             Q + Y  L  ++I+A N A              ++  +  N    ++  E        
Sbjct: 367 AMQLQWYRSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTD 426

Query: 53  DEKIKALEVII--------EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
           +  I     +I        +K   + +++    +  L  L+                 + 
Sbjct: 427 EHLIYNSGKMIVLDKLLKRKKKEGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGATSH 486

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    I E+N       +      + G G+NL    + +V +   W+ +      +   
Sbjct: 487 EERIAAIDEFNAHDSKKFIFLLTTRAGGLGINLVT-ADTVVLYDSDWNPQA-----DLQA 540

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K+ V VY L+ +N I+E V++R   K  +  L++ 
Sbjct: 541 MDRAHRIGQKKQVHVYRLVTENAIEEKVIERAAQKLRLDQLVIQ 584


>gi|67901102|ref|XP_680807.1| hypothetical protein AN7538.2 [Aspergillus nidulans FGSC A4]
 gi|40742928|gb|EAA62118.1| hypothetical protein AN7538.2 [Aspergillus nidulans FGSC A4]
 gi|259483857|tpe|CBF79592.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1132

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQK-----------AF 88
                +   + +   KI+ L  I+  +A     IV   F S L +++              
Sbjct: 887  LNPGDDENQVLPSTKIRQLMKILRREAPDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYD 946

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 947  GSMRNDLREASLEKLRNHRGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1000

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y +I ++T++E +L     K  + ++ +  
Sbjct: 1001 EEQAIDRVHRLNQTVDVKIYKMIIKDTVEERILDLQERKRELANVTIEG 1049



 Score = 41.3 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 4/44 (9%)

Query: 4   YHKFQRE----LYCDLQGENIEAFNSASKTVKCLQLANGAVYYD 43
           Y + ++     L   +    I+   + +  ++  Q  N      
Sbjct: 639 YERLEQRTDNSLEKMMGDSKIDYAGALTLLLRLRQCCNHPDLVR 682


>gi|291239125|ref|XP_002739475.1| PREDICTED: kismet-like, partial [Saccoglossus kowalevskii]
          Length = 1069

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 72/233 (30%), Gaps = 39/233 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           K Y       +  L   +    N     +  ++  +  N     +  +    +       
Sbjct: 36  KYYRAILERNFSFLAKGSGSNANVPNLMNTMMELRKCCNHPFLINGAEEQIMLDFPENNY 95

Query: 53  ----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--- 97
                       K+  ++ ++ K       +++       L  L+    Q R   +    
Sbjct: 96  LRQLLALIQSAGKMVLIDKLLPKLKEGGHKVLIFSQMVKCLDILEDYLLQKRYPYERIDG 155

Query: 98  -------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                     I  +++      +      + G G+NL    + ++ F   W+ +      
Sbjct: 156 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN----- 209

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +     R  + G  + V VY LI +N+ +  +  R   K  +   +L +++ +
Sbjct: 210 DLQAQARCHRIGQSKLVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMRHQ 262


>gi|62319947|dbj|BAD94038.1| pseudogene [Arabidopsis thaliana]
          Length = 1221

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 873  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLD 932

Query: 51   ---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
               +   K+  L+ ++ +       +++       L  L +         +         
Sbjct: 933  KIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAE 992

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + +V F   W+ +      +   +
Sbjct: 993  LRQQAMDHFNAPASDDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQN-----DLQAM 1046

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1047 SRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1095


>gi|302421718|ref|XP_003008689.1| chromodomain-helicase-DNA-binding protein [Verticillium albo-atrum
            VaMs.102]
 gi|261351835|gb|EEY14263.1| chromodomain-helicase-DNA-binding protein [Verticillium albo-atrum
            VaMs.102]
          Length = 1710

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 69/198 (34%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y +    +                K+  LE+++ K       +++  
Sbjct: 1085 LMQLRKCLCHPFIYSQAIEERSDDPIVTQRNLISASAKLLLLEIMLPKLKERGHRVLLFS 1144

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F + L  ++          +              I  +N    P+        + G G+
Sbjct: 1145 QFLNQLDIVEDYLTGRGYDFRRLDGSISSLEKQRRIDAFNAPDSPVFAFLLSTRAGGVGI 1204

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +     +   ++R  + G K  V  + L+ +N+++E ++Q 
Sbjct: 1205 NL-ATADTVIILDPDFNPHQ-----DLQALSRAHRIGQKNKVLCFQLMTKNSVEEKIMQI 1258

Query: 184  LRTKSTIQDLLLNALKKE 201
             R K  +  +L+ ++  E
Sbjct: 1259 GRKKMALDHVLIESMDNE 1276


>gi|238489253|ref|XP_002375864.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
 gi|220698252|gb|EED54592.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus flavus
           NRRL3357]
          Length = 819

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 26/219 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKA 58
            + +R     L  + +      +  ++     N    +    + + V         K+  
Sbjct: 525 EEIERAKTFKLAKQEVAQKKMQNPVMQARLACNSPHNFYWPWNDEPVDESLITASGKMLL 584

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEW 104
           L+ ++ +  AN   I++   F S L  LQ    Q R+             D+        
Sbjct: 585 LDRLVARLLANGHKILIFSQFKSQLDILQDWATQLRSWNCCRIDGAISQTDRRDQIKAFN 644

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  R 
Sbjct: 645 TDPDYKIFLLSTRAGGQGINLMA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTRP 698

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 699 VIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 737


>gi|17569817|ref|NP_510140.1| CHromoDomain protein family member (chd-3) [Caenorhabditis elegans]
 gi|6165993|sp|Q22516|CHD3_CAEEL RecName: Full=Chromodomain-helicase-DNA-binding protein 3 homolog;
            Short=CHD-3
 gi|3875165|emb|CAA91798.1| C. elegans protein T14G8.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|3879819|emb|CAA91810.1| C. elegans protein T14G8.1, confirmed by transcript evidence
            [Caenorhabditis elegans]
 gi|11095331|gb|AAG29837.1| CHD-3 [Caenorhabditis elegans]
          Length = 1787

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  ++  +  N    +               E  
Sbjct: 874  KYYKNILTRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGS 933

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                +  K   L+ ++ K       +++       L  L+                 T  
Sbjct: 934  ALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQ 993

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 994  QRQDAIDRYNAPGAKQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1047

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G K  V +Y  + + +++E +    + K  +  L++ A
Sbjct: 1048 SRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRA 1091


>gi|328769968|gb|EGF80011.1| hypothetical protein BATDEDRAFT_35332 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 2044

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                +             K    + ++N +  I +L       G GLNL  G + ++F  
Sbjct: 1855 KHMPSVTYMRLDGTTDGIKRHELVTKFNQDPSIDVLLLTTHVGGLGLNLT-GADTVIFVE 1913

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G KR V VY LI + T++E ++   + K  +   ++N
Sbjct: 1914 HDWNP-----MKDLQAMDRVHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKLNLASSVIN 1968


>gi|31874139|emb|CAD97978.1| hypothetical protein [Homo sapiens]
 gi|190689855|gb|ACE86702.1| helicase, lymphoid-specific protein [synthetic construct]
 gi|190691223|gb|ACE87386.1| helicase, lymphoid-specific protein [synthetic construct]
          Length = 822

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 548 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 607

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 608 MTSMLDILMDYCHLRDFNFSRLNGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 667

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 668 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 721

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 722 AKRKLEKLIIH 732


>gi|118092730|ref|XP_421626.2| PREDICTED: similar to proliferation-associated SNF2-like protein
           [Gallus gallus]
          Length = 822

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 547 MMLLRKCCNHPYLIEYPLDPATQQFKVDEDLVKNSGKFLLLDRMLPELKKRGHKVLMFSQ 606

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               L  L                     D++    Q  N+ ++ L      + G G+NL
Sbjct: 607 MTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRAGGLGINL 666

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 667 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 720

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 721 AKRKLEKLIIH 731


>gi|67969780|dbj|BAE01238.1| unnamed protein product [Macaca fascicularis]
          Length = 489

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 164 ELYKRFLRQAKPAEELREGKMSVSSLSSITS-LKKLCNHPALIHDKCVEEEDGFVGALDL 222

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 223 FPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTRTLDLFEKLCRARRYLY 282

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 283 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 341

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 342 -----DEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 390


>gi|315053993|ref|XP_003176371.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
 gi|311338217|gb|EFQ97419.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
          Length = 831

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           ++NG     E K W       +  +   I +     I++  ++   L   ++        
Sbjct: 568 VSNGRRGDREVKSWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYG 627

Query: 91  ------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + K    + ++N+      +      + G G+NL  G N LV F   W+  
Sbjct: 628 CIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPA 686

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q       + R  + G  +  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 687 ADQ-----QALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 738


>gi|148232962|ref|NP_001086442.1| helicase, lymphoid-specific [Xenopus laevis]
 gi|66911167|gb|AAH97562.1| HELLS protein [Xenopus laevis]
          Length = 838

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +        +            K   L+ ++ +       +++   
Sbjct: 567 MMLLRKCCNHPYLIEYPLDPLTQNFKIDEELVNSSGKFLLLDRLLPEMKKRGHKVLIFSQ 626

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +       ++ +N +  + +      + G G+NL
Sbjct: 627 MTMMLDILMDYCYYKKFNFCRLDGSMSYTDREENMRSFNTDPDVFIFLVSTRAGGLGINL 686

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  R V VY L+  NTID+ +++R  
Sbjct: 687 TA-ADTVIIYDSDWNPQA-----DLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAA 740

Query: 186 TKSTIQDLLLNALK 199
            K  ++ L+++  K
Sbjct: 741 AKRKLEKLVIHKNK 754


>gi|229914880|gb|ACQ90605.1| SWI/SNF helicase-like protein [Eutrema halophilum]
          Length = 768

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K + L  ++   K +   +++   + S L  L+          +              
Sbjct: 592 SAKCRTLAELLPSMKQSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTI 651

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N  K I        + G GLNL  G + ++   + ++ +     I+R    R  + 
Sbjct: 652 VDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQ-----IDRQAEDRCHRI 705

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 706 GQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 743


>gi|254576891|ref|XP_002494432.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
 gi|238937321|emb|CAR25499.1| ZYRO0A01342p [Zygosaccharomyces rouxii]
          Length = 1343

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +       +      ++     ++       KA+   +++ +
Sbjct: 751 KIMQLRKICNHPFVFDEVESVINPSRQNTPLLYRVAGKFELLDRVLPKFKASGHRVLMFF 810

Query: 76  HFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                +  +                    +     ++E+N              + G GL
Sbjct: 811 QMTQVMDIMEDFLRLRDHKYMRLDGATKTEDRQEMLREFNAENSDYFCFLLSTRAGGLGL 870

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 871 NLQS-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 924

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 925 AMQKLDIDGKVIQAGK 940


>gi|109090004|ref|XP_001095698.1| PREDICTED: lymphoid-specific helicase isoform 13 [Macaca mulatta]
          Length = 837

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 623 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|1495708|emb|CAA66380.1| RAD54 [Mus musculus]
          Length = 747

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPEEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVAEEDGFEGTLGI 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|327271626|ref|XP_003220588.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Anolis
           carolinensis]
          Length = 2660

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y     + +  L          N  +  ++  +  N     +  +        K  + 
Sbjct: 687 KYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 746

Query: 60  EVIIEKAN----------------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           + +  +                           +++       L  L+    Q R   + 
Sbjct: 747 DALDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 806

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 807 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 863

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 864 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|307182228|gb|EFN69559.1| Chromodomain-helicase-DNA-binding protein 1 [Camponotus floridanus]
          Length = 1831

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 70/222 (31%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y   ++       G    +    +  ++  +  N A      +  +E  +        
Sbjct: 713 KNYDALRK-------GMKGSSSTFLNIVIELKKCCNHAFLTKPNEAEREKGNGDYLQTLI 765

Query: 61  ------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                       ++  +     +++       L  L +   +     +            
Sbjct: 766 RGSGKLVLLDKLLVRLRDTGHRVLIFSQMVKMLDILSEYLQKRHFPFQRLDGSIKGELRK 825

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 826 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 879

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 880 HRIGQKNKVNIYRLVTKNSVEEEIVERAKQKMVLDHLVIQRM 921


>gi|301785221|ref|XP_002928025.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like,
           partial [Ailuropoda melanoleuca]
          Length = 1114

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 713 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 772

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 773 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 832

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 833 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 886

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 887 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 930


>gi|225432404|ref|XP_002276907.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 3462

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   +  G      A +  +  ++   + N          E  +    H    
Sbjct: 1339 AYQKLLMKRVEENLGSIGSTKARSVHNSVMELRNICNHPYLSQLHADEVDNLIPKHFLPP 1398

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ ++ K       ++        L  +++                +   
Sbjct: 1399 VVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLHWKQYRYLRLDGHTSGGD 1458

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I+++N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1459 RGALIEQFNQPDSPYFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1512

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G KR V V  L    T++E V      K  + +  + A
Sbjct: 1513 RAHRIGQKRDVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1555


>gi|198428806|ref|XP_002129178.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
           intestinalis]
          Length = 936

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 77/215 (35%), Gaps = 29/215 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----------KHWKEVHDEKIK 57
           +RE       E++   + ++  ++  +  N                           K++
Sbjct: 658 EREDRMTYDDESVVNVSLSNLMMQLRKCCNHPYLIKYPLIPGTDIFRVDEELISSSGKLQ 717

Query: 58  ALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
            L+ ++   K     I++     S L  L+                   +     I E+N
Sbjct: 718 LLDRMLPVLKKKGHKILLFSQMTSLLDILEDFCNFRNHSYVRLDGSTKCEVRQERIDEYN 777

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  + +      + G G+NL    + +V +   W+ +      +     R  + G  R+
Sbjct: 778 RDPDLFIFLLSTRAGGLGINLTS-ADTVVIYDSDWNPQN-----DLQAQDRCHRIGQTRS 831

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V +Y  ++ NT+D+ +++R   K  ++ +++N  K
Sbjct: 832 VLIYRFVSSNTVDQFMVERAEAKRVLERMIINRNK 866


>gi|290994049|ref|XP_002679645.1| predicted protein [Naegleria gruberi]
 gi|284093262|gb|EFC46901.1| predicted protein [Naegleria gruberi]
          Length = 1001

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 29  TVKCLQLANGAVYYDE-------EKHWKEVHDEKI--KALEVIIEKANAAPIIVAYHFNS 79
            +   +  +    ++        E      +  K+      +   K     +++      
Sbjct: 430 LMSLRKCCDHPYMFEGAEEEPFVEGEHIVNNSGKMIILDKLLKKLKQEGHKVLIFSQMTQ 489

Query: 80  DLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            L  LQ  F                ++    I+ + +  + +      + G GLNL    
Sbjct: 490 MLDILQDYFSFRKWNYERLDGSVRGEERFEAIKSFTDKDVFVFLLSTRAGGVGLNLTS-A 548

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++F  +  + +     ++     R  + G  + V VY L+ +++++E++L+R   K  
Sbjct: 549 DTVIFMDMDMNPQ-----MDLQAQARCHRIGQDKPVTVYRLVTESSVEEVILKRSMKKIA 603

Query: 190 IQDLLLN 196
           +    ++
Sbjct: 604 LSINTID 610


>gi|164660548|ref|XP_001731397.1| hypothetical protein MGL_1580 [Malassezia globosa CBS 7966]
 gi|159105297|gb|EDP44183.1| hypothetical protein MGL_1580 [Malassezia globosa CBS 7966]
          Length = 999

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 80/221 (36%), Gaps = 30/221 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------V 51
           + Y       Y  L G +   F+  +  V+  + +N    +D  +              +
Sbjct: 558 RMYKAILTRNYSLLSGSHSTQFSLLNIAVELKKASNHPYLFDGVETPTNSREETLRGLIM 617

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
           H  K+  L+ ++   KA+   +++       L  L         + +             
Sbjct: 618 HSGKMVLLDKLLARLKADNHRVLIFSQMVHMLDILSDYLSLRGYVHQRLDGTVSSDTRKR 677

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N  + P         + G G+NL    + ++ F   W+ +      +   ++R  
Sbjct: 678 AIDHFNAPQSPDFCFLLSTRAGGLGINL-ETADTVIIFDSDWNPQN-----DLQAMSRAH 731

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   K  + V+  + + T++E VL+R + K  ++  ++N +
Sbjct: 732 RLNSKFHINVFRFLTKGTVEEDVLERAKQKMGLEYAIINQM 772


>gi|171906595|ref|NP_033041.3| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906597|ref|NP_001116430.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|171906599|ref|NP_001116431.1| DNA repair and recombination protein RAD54-like [Mus musculus]
 gi|51316197|sp|P70270|RAD54_MOUSE RecName: Full=DNA repair and recombination protein RAD54-like;
           AltName: Full=RAD54 homolog; Short=mHR54; Short=mRAD54
 gi|123244614|emb|CAM20670.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|123253898|emb|CAM22667.1| RAD54 like (S. cerevisiae) [Mus musculus]
 gi|148698674|gb|EDL30621.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPEEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVAEEDGFEGTLGI 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|302844141|ref|XP_002953611.1| hypothetical protein VOLCADRAFT_118418 [Volvox carteri f.
           nagariensis]
 gi|300261020|gb|EFJ45235.1| hypothetical protein VOLCADRAFT_118418 [Volvox carteri f.
           nagariensis]
          Length = 1130

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----- 89
           +G +          +   KIK L+ ++ K     + +++   + + L  L+         
Sbjct: 782 SGLLESYILPEDSVLCSAKIKHLDELLPKLKEKGSRVLLFSQWTTVLDLLEWYMHLRGYT 841

Query: 90  -----QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G  +D+    +  +N  + P  +      + G GLNL  G + ++   + ++ +
Sbjct: 842 YCRLDGGTQVDERLALVDAFNAPESPYFVFLLSTRAGGQGLNLT-GADTVILHDVDFNPQ 900

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                I++    R  + G  R V VY LI + T+D  +      K  +   +L  +
Sbjct: 901 -----IDKQAEDRAHRLGQTRTVAVYRLITKGTVDSNIQAIAERKLALDHAVLTDV 951


>gi|195435393|ref|XP_002065676.1| GK15574 [Drosophila willistoni]
 gi|194161761|gb|EDW76662.1| GK15574 [Drosophila willistoni]
          Length = 1941

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
            KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 792  KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 851

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 852  TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQRLDGSIKGE 911

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 912  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 965

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 966  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1010


>gi|119622570|gb|EAX02165.1| chromodomain helicase DNA binding protein 2, isoform CRA_d [Homo
           sapiens]
          Length = 1857

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 690 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 749

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 750 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 809

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 810 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 863

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 864 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 907


>gi|73951151|ref|XP_859429.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 14 [Canis familiaris]
          Length = 1809

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 708 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 767

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 768 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 827

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 828 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 881

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 882 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 925


>gi|301619518|ref|XP_002939139.1| PREDICTED: TATA-binding protein-associated factor 172 [Xenopus
            (Silurana) tropicalis]
          Length = 1693

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRE--------------LYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +               L  + +   ++A  +         +L N        
Sbjct: 1372 VQLYEDFAKSRAKTDIDETVSTTSLIEENEKPKVKATGHVFQALQYLRKLCNHPALVLTT 1431

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 1432 QHPEYKKISEQLGVQNSSLRDIQHAPKLSALKQLLLDCGLGNGGTAESGTEAVVAQHRIL 1491

Query: 73   VAYHFNSDLARLQKAFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  +++   +                  +    +  +N +  I +L      
Sbjct: 1492 IFCQLKSMLDIVEQDLLKPHLPSVTYLRLDGTIPAGQRHSIVSRFNNDPSIDVLLLTTHV 1551

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1552 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1605

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K +I + +++
Sbjct: 1606 KIMGLQKFKMSIANTVIS 1623


>gi|195128581|ref|XP_002008741.1| GI13663 [Drosophila mojavensis]
 gi|193920350|gb|EDW19217.1| GI13663 [Drosophila mojavensis]
          Length = 1992

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDE--------EKHW 48
              Q++ Y  +  +N EA NS S           +   +  N    +              
Sbjct: 973  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSGSEDAPTSAGGI 1032

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++++  A    +++       L  L+      +   +     
Sbjct: 1033 YEINSLTKAAGKLVLLSKMLKQLKAQGHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGS 1092

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1093 ITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1146

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1147 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1192


>gi|158259161|dbj|BAF85539.1| unnamed protein product [Homo sapiens]
          Length = 1049

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|119489243|ref|XP_001262873.1| SNF2 family helicase/ATPase (Swr1), putative [Neosartorya fischeri
            NRRL 181]
 gi|119411031|gb|EAW20976.1| SNF2 family helicase/ATPase (Swr1), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1695

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1362 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1417

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I +      S G G+NL  G + ++F+ L W+
Sbjct: 1418 GHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLT-GADTVIFYDLDWN 1476

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1477 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1530


>gi|259147128|emb|CAY80381.1| Sth1p [Saccharomyces cerevisiae EC1118]
          Length = 1359

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE------KIKALEVII------EKANAAPIIVAY 75
           K ++  ++ N    +DE +              ++     ++       KA+   +++ +
Sbjct: 755 KIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFF 814

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                      F                 ++    +  +N              + G GL
Sbjct: 815 QMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNVFNAPDSDYFCFLLSTRAGGLGL 874

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 875 NLQT-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 928

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 929 AMQKLDIDGKVIQAGK 944


>gi|261197277|ref|XP_002625041.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis
            SLH14081]
 gi|239595671|gb|EEQ78252.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis
            SLH14081]
          Length = 1542

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 41/235 (17%)

Query: 2    KQYH-------KFQRELYCDLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G  ++     N  +  ++  +       Y +    + +
Sbjct: 935  KLYKSILAKNPQLIQSIFKKTPGGTLKRTEHHNLNNILMQLRKCLCHPFVYSKAIEERAI 994

Query: 52   H-----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K++ LE+++ K       +++   F  +L  ++        L +  
Sbjct: 995  SAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRL 1054

Query: 98   ---------PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I ++N    P         S G G+NL    + ++     ++  +   
Sbjct: 1055 DGSMSSLQKQKQIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQ--- 1110

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +   ++R  + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1111 --DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|170032260|ref|XP_001844000.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
 gi|167872116|gb|EDS35499.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
          Length = 821

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 39/225 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------------------ 46
            +         +     A           ++ N                           
Sbjct: 488 ERLLTLALKHYEQSGTSAITPLQLITILKKICNHPSLISTTDSKDPDSLQNLLISQLPSW 547

Query: 47  -HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
            H       K+  LE ++E        +++  +F+  L  +                   
Sbjct: 548 QHMGPADSGKLAILESLLEALIERREKVVIVSYFSKTLDMIAGLCEHYNYKFCRLDGATP 607

Query: 94  LDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  +N     I +      + G GLNL  G + LV F   W+        +  
Sbjct: 608 SQDRGKLVATFNNPSSDIFIFLLSAKAGGIGLNL-VGASRLVLFDNDWNPAS-----DLQ 661

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++R  + G  R VF+Y LI   +I+E + QR  +K+++   +++
Sbjct: 662 AMSRIWRDGQTRNVFIYRLITAFSIEEKIFQRQISKTSLSGSVVD 706


>gi|119570416|gb|EAW50031.1| helicase, lymphoid-specific, isoform CRA_f [Homo sapiens]
          Length = 822

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 548 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 607

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 608 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 667

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 668 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 721

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 722 AKRKLEKLIIH 732


>gi|268053983|gb|ACY92478.1| brahma-like protein [Saccoglossus kowalevskii]
          Length = 881

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDE------------ 44
            Y   QR       G   +           +  ++  +L N    + +            
Sbjct: 241 LYRHMQRNGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKLCNHPFMFPQIEEAFCEHLGQT 300

Query: 45  ----EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
               +         K + L+ I+ K    N   ++ +               +G    + 
Sbjct: 301 GGIVQGADLYRSSGKFELLDRILPKLKACNHKALLFSQMTTLMTILEDYFAHRGFRYLRL 360

Query: 97  --------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                       ++ +N    P  +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 361 DGTTKSDDRAKLLEMFNAPGSPYNIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 416

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 417 --DLQAQDRAHRIGQKSEVRVLRLLTVNSVEEKILAAARYKLNVDEKVIQA 465


>gi|327351572|gb|EGE80429.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1542

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 41/235 (17%)

Query: 2    KQYH-------KFQRELYCDLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G  ++     N  +  ++  +       Y +    + +
Sbjct: 935  KLYKSILAKNPQLIQSIFKKTPGGTLKRTEHHNLNNILMQLRKCLCHPFVYSKAIEERAI 994

Query: 52   H-----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K++ LE+++ K       +++   F  +L  ++        L +  
Sbjct: 995  SAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRL 1054

Query: 98   ---------PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I ++N    P         S G G+NL    + ++     ++  +   
Sbjct: 1055 DGSMSSLQKQKQIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQ--- 1110

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +   ++R  + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1111 --DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|67517684|ref|XP_658628.1| hypothetical protein AN1024.2 [Aspergillus nidulans FGSC A4]
 gi|40746436|gb|EAA65592.1| hypothetical protein AN1024.2 [Aspergillus nidulans FGSC A4]
          Length = 866

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L    I      +  ++     N     Y+   +    +         K+
Sbjct: 567 EEIERANTIKLAKREIAQKKMQNPVMQARLACNSPHNFYWPWAEDPSSIDETLVTASGKM 626

Query: 57  KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
             L+ +I         I++   F               +          +       I+ 
Sbjct: 627 LLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKA 686

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 687 FNTDKDYKIFLLSTRAGGQGINLVA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 740

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 741 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 781


>gi|50288627|ref|XP_446743.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526051|emb|CAG59670.1| unnamed protein product [Candida glabrata]
          Length = 1354

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEKAN--AAPIIVAY 75
           K ++  ++ N    +DE +                  K + L+ I+ K       +++ +
Sbjct: 738 KIMQLRKICNHPFVFDEVEAVVNPSRGNSDLLYRVAGKFELLDRILPKFKATGHRVLIFF 797

Query: 76  H----------FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGL 123
                      F                 +     ++E+N    +         + G GL
Sbjct: 798 QMTQVMDIMEDFLRMRDLKYMRLDGSTKAEDRNDMLKEFNVENSEYFCFLLSTRAGGLGL 857

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K  V +  LI  ++++E++L+R
Sbjct: 858 NLQS-ADTVIIFDTDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILER 911

Query: 184 LRTKSTIQDLLLNALK 199
              K  I   ++ A K
Sbjct: 912 AMQKLDIDGKVIQAGK 927


>gi|226874878|ref|NP_001152878.1| TATA-binding protein-associated factor 172 [Danio rerio]
 gi|220678558|emb|CAX13537.1| novel protein similar to H.sapiens BTAF1, BTAF1 RNA polymerase II,
            B-TFIID transcription factor-associated, 170kDa (Mot1
            homolog, S. cerevisiae) (BTAF1) [Danio rerio]
 gi|220679212|emb|CAX14073.1| novel protein similar to H.sapiens BTAF1, BTAF1 RNA polymerase II,
            B-TFIID transcription factor-associated, 170kDa (Mot1
            homolog, S. cerevisiae) (BTAF1) [Danio rerio]
          Length = 1858

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        + I                  +         +L N        
Sbjct: 1536 VQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1595

Query: 46   KHWKEVH-----------------DEKIKALEVIIEKAN----------------AAPII 72
            +H +  H                   K+ AL+ ++                       ++
Sbjct: 1596 QHPEYKHITEQLSTQHSSLRDIQHAPKLSALKQLLLDCGLGSAGASDSGTEAVVAQHRVL 1655

Query: 73   VAYHFNSDLARLQK----AFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  +++        G T  +             +  +N +  I +L      
Sbjct: 1656 IFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHV 1715

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 1716 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1769

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K TI + +++
Sbjct: 1770 KIMGLQKFKMTIANTVIS 1787


>gi|194038394|ref|XP_001926393.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2 [Sus scrofa]
          Length = 1828

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|157132188|ref|XP_001662505.1| helicase [Aedes aegypti]
 gi|108871256|gb|EAT35481.1| helicase [Aedes aegypti]
          Length = 1372

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             K+  L+ ++   KA    +++       +  L++     +              +    
Sbjct: 1123 GKLAVLDSLLTRLKAQGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMV 1182

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                N   I +      + G G+NL    + ++F+   W+       +++  + R  + G
Sbjct: 1183 ADFQNRADIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAHRLG 1236

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + V VY LI + TI+E +LQR R KS IQ ++++ 
Sbjct: 1237 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISG 1273


>gi|20987234|gb|AAH21643.1| RAD54 like (S. cerevisiae) [Mus musculus]
          Length = 747

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPEEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVAEEDGFEGTLGI 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|73951145|ref|XP_859323.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 11 [Canis familiaris]
          Length = 1820

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|73946639|ref|XP_860267.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 18 [Canis familiaris]
          Length = 1555

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 39/228 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +          
Sbjct: 963  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVTMRPCPGPL 1022

Query: 53   ---------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
                       K + L+ I+ K  A    +++     S +  ++  F             
Sbjct: 1023 CNPDLLYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGT 1082

Query: 92   RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +
Sbjct: 1083 TKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----D 1136

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 LQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1184


>gi|34526499|dbj|BAC85127.1| FLJ00266 protein [Homo sapiens]
          Length = 1544

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
           K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 22  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 81

Query: 50  EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
             HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 82  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 141

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 142 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 198

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 199 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 251


>gi|114631897|ref|XP_001150864.1| PREDICTED: helicase, lymphoid-specific isoform 4 [Pan troglodytes]
          Length = 822

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 548 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 607

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 608 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 667

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 668 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 721

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 722 AKRKLEKLIIH 732


>gi|114558614|ref|XP_513683.2| PREDICTED: transcription termination factor, RNA polymerase II [Pan
            troglodytes]
          Length = 1162

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 972  VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1032 RGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1090

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1091 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|19577362|emb|CAD28443.1| possible swi2/snf2-like protein [Aspergillus fumigatus]
          Length = 858

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L  + I      +  ++     N     Y+        +         K+
Sbjct: 559 EEIERANTIKLAKKEIAQKKLQNPVMQARLACNSPHNFYWPWSDDPAAIDETLVTASGKM 618

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  LQ    Q             +       I+ 
Sbjct: 619 LLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKA 678

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  
Sbjct: 679 FNSDPGYKIFLLSTRAGGQGINLVA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQT 732

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 733 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 773


>gi|70995832|ref|XP_752671.1| SNF2 family helicase/ATPase PasG [Aspergillus fumigatus Af293]
 gi|42820703|emb|CAF32016.1| possible swi2/snf2-like protein [Aspergillus fumigatus]
 gi|66850306|gb|EAL90633.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus fumigatus
           Af293]
 gi|159131425|gb|EDP56538.1| SNF2 family helicase/ATPase PasG, putative [Aspergillus fumigatus
           A1163]
          Length = 867

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L  + I      +  ++     N     Y+        +         K+
Sbjct: 568 EEIERANTIKLAKKEIAQKKLQNPVMQARLACNSPHNFYWPWSDDPAAIDETLVTASGKM 627

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  LQ    Q             +       I+ 
Sbjct: 628 LLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKA 687

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  
Sbjct: 688 FNSDPGYKIFLLSTRAGGQGINLVA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQT 741

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 742 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 782


>gi|5733122|gb|AAD49435.1| lodestar protein [Homo sapiens]
          Length = 1162

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 972  VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1032 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1090

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1091 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|322790023|gb|EFZ15099.1| hypothetical protein SINV_15320 [Solenopsis invicta]
          Length = 3700

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 71/176 (40%), Gaps = 19/176 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR 92
            +++  +    +    +    K+++L+ ++ K  +    +++       L  L+       
Sbjct: 1534 ISSHMLTQFPDPRLIQYDCGKLQSLDCLLRKLKSGNHRVLIFTQMTRMLDVLEAFLNFHG 1593

Query: 93   TLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             +           +    ++ +N + +I        S G G+NL  G + ++F+   W+ 
Sbjct: 1594 HIYLRLDGTTRVDQRQILMERFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNP 1652

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  ++     R  + G  R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1653 T-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1703


>gi|149691012|ref|XP_001488063.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Equus caballus]
          Length = 1828

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|5917753|gb|AAD56021.1|AF181824_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
          Length = 918

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 345 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 404

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 405 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFRRLDGSIKGEL 464

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 465 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 518

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 519 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 562


>gi|67483974|ref|XP_657207.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474451|gb|EAL51818.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 955

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 27/217 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHDEKI 56
           Y K        + G+ I      +   +  ++ +                    +   K+
Sbjct: 350 YRKVLMGDVTVIIGDKIVKSKLNNTMTQLRKVCDHPYLMPGAEPEPYVNGEHLCLSSAKM 409

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP-CTIQEW 104
             +E ++EK   N   I++       L  +         +     G+T  +D    I+++
Sbjct: 410 IVMEKLVEKHLKNNGKILIFSQMTRMLDIIDDYLVFKDIEHYRIDGQTQQEDRVEQIKDF 469

Query: 105 NEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+    +        S G G+NLQ   + ++ +   W+ +      +   + R  + G  
Sbjct: 470 NDPNGKVSIFLLSTRSGGLGINLQS-ADTVILYDSDWNPQS-----DIQAMDRAHRIGQT 523

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V VY LI + T ++ +++    K  +  L++ + K
Sbjct: 524 KPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGK 560


>gi|327348692|gb|EGE77549.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1072

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD----- 95
            DE +    +   KI+ L  I++K +     IV   F S L +++               
Sbjct: 823 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYARYDG 882

Query: 96  ------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++    +  N  K  +L     +   GLNL    + +V    +W+       +E
Sbjct: 883 AMRNDLREHSLDRLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVE 936

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + R  +      V +Y L  + T++E ++     K  + +  +  
Sbjct: 937 EQAIDRVHRLNQTVDVKIYKLTIKGTVEERIVDLQERKRELANATIEG 984



 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   + G+NI   ++    ++  Q  N     
Sbjct: 569 YKRLEQRTDKTLERMIGGDNINYASALVLLLRLRQACNHPDLV 611


>gi|255077555|ref|XP_002502414.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517679|gb|ACO63672.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1050

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 66/205 (32%), Gaps = 18/205 (8%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            E     +   + A  +  +    +  A+   + +                  + +    
Sbjct: 572 DEAREKFEKARVVARAALGEDAHLVGGADHPDMDFARLGDATNCGKLLALEKLLSLWHRQ 631

Query: 68  AAPIIVAY----------HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHP 116
              +++             F +    +                + ++N  +   +     
Sbjct: 632 RDKVLLFSTSARLLTVLEKFLTQRGYVYARLDGSTAGKDRQKLVDDFNASESLFVFLLST 691

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N +V F   W+  +     +     R  + G +R V VY L+A  TI
Sbjct: 692 GAGGVGLNITS-ANRVVIFDPNWNPAK-----DAQAQDRAYRIGQRRDVDVYRLLAAGTI 745

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           +E+V QR   K    ++ ++A K+ 
Sbjct: 746 EEMVYQRQVYKQQQSNVAVDASKER 770


>gi|241953595|ref|XP_002419519.1| ISWI chromatin-remodeling complex ATPase, putative [Candida
           dubliniensis CD36]
 gi|223642859|emb|CAX43114.1| ISWI chromatin-remodeling complex ATPase, putative [Candida
           dubliniensis CD36]
          Length = 1054

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q E Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 384 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 443

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                 + 
Sbjct: 444 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFREYEYCRIDGSTSH 503

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 504 EDRIEAIDEYNAPNSDKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 557

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V V+  + +  I+E VL+R   K  +  L++   ++
Sbjct: 558 MDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQ 605


>gi|126276965|ref|XP_001365054.1| PREDICTED: similar to chromodomain helicase DNA binding protein 2
           [Monodelphis domestica]
          Length = 1836

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 733 KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 792

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 793 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 852

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 853 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 906

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 907 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|73951139|ref|XP_859203.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 8 [Canis familiaris]
          Length = 1839

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|239606660|gb|EEQ83647.1| chromatin remodeling complex subunit [Ajellomyces dermatitidis ER-3]
          Length = 1542

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 41/235 (17%)

Query: 2    KQYH-------KFQRELYCDLQGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G  ++     N  +  ++  +       Y +    + +
Sbjct: 935  KLYKSILAKNPQLIQSIFKKTPGGTLKRTEHHNLNNILMQLRKCLCHPFVYSKAIEERAI 994

Query: 52   H-----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
                          K++ LE+++ K       +++   F  +L  ++        L +  
Sbjct: 995  SAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFSQFLDNLDVVEDFLDGLGLLHRRL 1054

Query: 98   ---------PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I ++N    P         S G G+NL    + ++     ++  +   
Sbjct: 1055 DGSMSSLQKQKQIDDFNAPDSPYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQ--- 1110

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +   ++R  + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1111 --DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQIGKKKMALDQVLIEHMDAE 1163


>gi|224001476|ref|XP_002290410.1| atpase-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220973832|gb|EED92162.1| atpase-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 873

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 75/225 (33%), Gaps = 37/225 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSA---------SKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Q++ Y  +  ++    N+          +  +   ++ N    +D  +      D   
Sbjct: 244 EMQQDWYKRVLRKDAHELNALGGPSHARLQNVLMHLRKVCNHPYLFDGAEQGPPFSDGPH 303

Query: 57  KAL----------EVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDK 96
                         +   KA  + +++       L  +                    +K
Sbjct: 304 LWENSGKMQLLNKLLPKLKAKGSRVLIFSQMTRVLDIMEDYLRLVGHEYCRIDGNTDGEK 363

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N              + G G+NL    +I++ F   W+ +     ++   + 
Sbjct: 364 RDSQMEEFNAPGSSKFCFLLSTRAGGLGINL-ATADIVILFDSDWNPQ-----VDLQAMD 417

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  + V V+  I++ T++E +++R   K  +   ++   +
Sbjct: 418 RAHRIGQTKPVQVFRFISEGTVEEKIIERADKKLFLDAAVIQQGR 462


>gi|301607520|ref|XP_002933353.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
           [Xenopus (Silurana) tropicalis]
          Length = 1809

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 74/223 (33%), Gaps = 32/223 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           KQY++    R      +G         +  ++  +  N       E+  KE         
Sbjct: 729 KQYYRWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCFLIKPEETEKESRLDSLQSL 788

Query: 52  --HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
                K+  L+ ++ +       +++       L  L +         +           
Sbjct: 789 IRSSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLAIKHYPFQRLDGSIKGELR 848

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N              + G G+NL    + +V F   W+ +      +     R
Sbjct: 849 KQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQAR 902

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 AHRIGQKKQVNIYRLVTRGTVEEDIIERAKKKMVLDHLVIQRM 945


>gi|255580599|ref|XP_002531123.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
 gi|223529287|gb|EEF31257.1| chromodomain helicase DNA binding protein, putative [Ricinus
            communis]
          Length = 1718

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 73/231 (31%), Gaps = 36/231 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKH------------- 47
            + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 834  QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGFNDSSK 893

Query: 48   --WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                 +   K+  L+ ++ + +     +++       L  L +         +       
Sbjct: 894  LERIILSSGKLVILDKLLVRLHETKHRVLIFSQMVRLLDILAEYLSLRGFQFQRLDGSTK 953

Query: 98   ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   +  +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 954  AELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 1007

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1008 AMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEG 1058


>gi|328768321|gb|EGF78368.1| hypothetical protein BATDEDRAFT_35805 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1991

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 39/230 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTV---KCLQLANGAVYYDEEKHWKEV------- 51
           K Y     + +  L+   ++  N  +      +  +           +            
Sbjct: 578 KWYRSILEKNFSWLKQGTLKKTNVPNLINTMIELRKCCIHPWLLKGAEDQILDELNARTN 637

Query: 52  ---------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQ 90
                       K+  ++ +++K       +++       L            L +    
Sbjct: 638 EQQFNALIQSSGKMVLIDKLLKKLKQGGHKVLIFSQMTKCLDLIQDYLRSRGWLYERIDG 697

Query: 91  GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G   D    +I  ++    +  +      + G G+NL    +  + F   W+ +      
Sbjct: 698 GVRGDLRQASIDRFSAPGSESFVFLLCTRAGGVGINLTA-ADTCIIFDSDWNPQN----- 751

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +    +R  + G K+ V +Y LI +NT +  +  R   K  +   LL  +
Sbjct: 752 DLQAQSRCHRIGQKKPVQIYRLITRNTYEREMFDRASMKLGLDKALLQRM 801


>gi|294953115|ref|XP_002787602.1| chromodomain helicase dna binding protein, putative [Perkinsus
            marinus ATCC 50983]
 gi|239902626|gb|EER19398.1| chromodomain helicase dna binding protein, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1191

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 66/260 (25%)

Query: 2    KQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            + Y          L       +     +  +  ++  +  N        +          
Sbjct: 755  EIYKAVYSRNIQKLMSSGDGEKKGGGPSLINLAMELRKCCNHPFLITGVEEQLTSRLKGD 814

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                         K+  LE +I+K  A    ++V   F   L  +           +   
Sbjct: 815  QDAINQLLVSASGKMVFLEKLIDKLLAEGEKVLVFSQFTMQLDIIDDYLRARGVRFERLD 874

Query: 98   --------PCTIQEWN----------------------------EGKIPLLFAHPASCGH 121
                       +  +N                            +    +      + G 
Sbjct: 875  GNVSAGDRQEAVDRFNRSTPSPSPSPSVSPSPEDEANDGVVGVDDFSSMVFLLSTKAGGV 934

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL    ++ V F   W+ +      +   + R  + G  + V VY L+ +NT +E + 
Sbjct: 935  GLNLCA-ASVAVIFDSDWNPQN-----DLQAMARCHRIGQVKNVQVYRLLTRNTYEERMF 988

Query: 182  QRLRTKSTIQDLLLNALKKE 201
                 K  ++  +++ L+  
Sbjct: 989  AVASHKLALERAVMSGLEAR 1008


>gi|295669680|ref|XP_002795388.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb01]
 gi|226285322|gb|EEH40888.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb01]
          Length = 1520

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 37/236 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 706 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 765

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 766 MRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 825

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 826 AGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 879

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIHV 205
            + R  + G  + V VY L++++T++E VL+R R K  ++ + +      KE I +
Sbjct: 880 AMARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLLEFITIQRGVTDKEAIEL 935


>gi|255946938|ref|XP_002564236.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591253|emb|CAP97480.1| Pc22g01920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 819

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 521 LKAIGILKKLCNHPDLLDLANDLPGCEHAFPEDYSPPDSRGRDRDIKSWYSGKMMVLDRM 580

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 + K    +  +N    
Sbjct: 581 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNIKKRTKLVDTFNNPDG 640

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 641 QEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 694

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 695 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 726


>gi|316974864|gb|EFV58334.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1667

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 85/256 (33%), Gaps = 58/256 (22%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            + Y    +E                 S      +L +  +   + +              
Sbjct: 1354 QAYSDEVQEKVASAAVGRESRKGITFSILTYLRKLCSHPLLVTDSEPDLMQSTLDKLHLN 1413

Query: 53   ----------DEKIKALEVIIEKAN------------------AAPIIVAYHFNSDLARL 84
                        K++AL+ ++ + +                  A   ++   + S L  L
Sbjct: 1414 DVQQLNDISYSGKMQALKQLLSECSIGSSNLADCDAVQSNGISAHRALIFCQYKSALNLL 1473

Query: 85   QKAFPQGR--------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
               F +G                 ++     Q++N +  I LL       G GLNL  G 
Sbjct: 1474 CTFFTRGYFGKGISFLKMDGSVEPERRQELAQQFNSDPSIDLLILTTQIGGLGLNLT-GA 1532

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            ++++FF   W+        +   + R  + G  R V VY LI+Q T++E +++  + K+ 
Sbjct: 1533 DVVIFFDHDWNP-----CRDIQAMDRAHRIGQTRTVNVYRLISQGTLEEKIMRFQKFKNF 1587

Query: 190  IQDLLLNALKKETIHV 205
            + D ++    K  + +
Sbjct: 1588 MADTVIGDENKSLLSM 1603


>gi|73986602|ref|XP_867703.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 5
            [Canis familiaris]
          Length = 1595

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 29/215 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKI 56
             Y   Q +     +G      N+    ++  ++ N    +   +              K 
Sbjct: 1007 LYRHMQAKGAHSGKGGTKTLMNT---IMQLRKICNHPYMFQHIEADLASRLDLYRASGKF 1063

Query: 57   KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            + L+ I+ K  A    +++     S +  ++  F                +     ++ +
Sbjct: 1064 ELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTF 1123

Query: 105  NEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            NE      +      + G GLNLQ   + ++ F   W+  +     +     R  + G +
Sbjct: 1124 NEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQQ 1177

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1178 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|148227774|ref|NP_001080504.1| chromodomain helicase DNA binding protein 4 [Xenopus laevis]
 gi|28422180|gb|AAH46866.1| B230399n07 protein [Xenopus laevis]
          Length = 1893

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 975  KYYKFILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1034

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                   K+  L+ ++ K   +   +++       L  L+               G T +
Sbjct: 1035 ALIKGAGKLFLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFMEHEGYKYERIDGGITGN 1094

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + +V +   W+        +    
Sbjct: 1095 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HNDIQAF 1148

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  R V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1149 SRAHRIGQNRKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1190


>gi|12232371|ref|NP_032260.2| lymphocyte-specific helicase [Mus musculus]
 gi|81910423|sp|Q60848|HELLS_MOUSE RecName: Full=Lymphocyte-specific helicase; AltName:
           Full=Proliferation-associated SNF2-like protein
 gi|12002696|gb|AAG43373.1|AF155210_1 proliferation associated SNF2-like protein [Mus musculus]
 gi|12061562|gb|AAB08015.2| lymphocyte specific helicase [Mus musculus]
 gi|74151148|dbj|BAE27697.1| unnamed protein product [Mus musculus]
 gi|148709866|gb|EDL41812.1| helicase, lymphoid specific [Mus musculus]
          Length = 821

 Score = 93.7 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       ++V   
Sbjct: 547 MMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQ 606

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    I  +N +  + L      + G G+NL
Sbjct: 607 MTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINL 666

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 667 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 720

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 721 AKRKLEKLIIH 731


>gi|198417079|ref|XP_002130103.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
          Length = 775

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 42/217 (19%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------DE 54
           +          +   +  +L N      E+   +E                         
Sbjct: 465 KNSEGVTSGGLTAITQLKKLCNHPALIYEKCLQQESGCEDMRKIFPSNFNPKLVQPELSG 524

Query: 55  KIKALEVII---EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
           K+K ++ ++     + +   ++  ++   L            +        T+ K    +
Sbjct: 525 KMKLVDYLLAVTRTSTSDKFVLVSNYTQTLDLCEQLCRSRRYMFVRLDGSMTIKKRAKVV 584

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N    P  +      + G GLNL  G N LV F   W+        +   + R  + 
Sbjct: 585 EKFNNPSSPEFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRD 638

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+  F+Y L+   TI+E + QR   K  +   +++
Sbjct: 639 GQKKPCFIYRLLGTGTIEEKIFQRQAHKKALSSCVVD 675


>gi|194760843|ref|XP_001962642.1| GF14337 [Drosophila ananassae]
 gi|190616339|gb|EDV31863.1| GF14337 [Drosophila ananassae]
          Length = 1891

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 768 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 827

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 828 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 887

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 888 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 941

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 942 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 986


>gi|302915977|ref|XP_003051799.1| SNF2 family DNA-dependent ATPase domain-containing protein [Nectria
            haematococca mpVI 77-13-4]
 gi|256732738|gb|EEU46086.1| SNF2 family DNA-dependent ATPase domain-containing protein [Nectria
            haematococca mpVI 77-13-4]
          Length = 1890

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 55/237 (23%)

Query: 9    RELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEV---------------- 51
            +++  +   E+ EA  +         +L N      +                       
Sbjct: 1574 KKIQAEAGREDKEAKQHIFQALQYMRKLCNSPAMVMKPGTPFYDDTQRILNKKGTSIEDT 1633

Query: 52   -HDEKIKALEVIIEKA-----------------NAAPIIVAYHFNSDLARLQKAF----- 88
             H  K+ AL  ++                         ++       L  +Q        
Sbjct: 1634 QHAPKLTALRDLLVDCGIGVEGNESNDPLYQPIKPHRALIFCQMKEMLDMVQNKVLKELL 1693

Query: 89   --------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +K    + ++N +    +L    +  G GLNL  G + ++F    W
Sbjct: 1694 PSVSHLRLDGSVEANKRQDIVNKFNSDPSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDW 1752

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   ++N
Sbjct: 1753 NPQK-----DLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTVVN 1804


>gi|156085062|ref|XP_001610014.1| SNF2 domain-containing protein / helicase domain-containing protein
           [Babesia bovis]
 gi|154797266|gb|EDO06446.1| SNF2 domain-containing protein / helicase domain-containing protein
           [Babesia bovis]
          Length = 829

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 24/199 (12%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVII--EKANAAPI 71
            +   +           +  N      +E+           K+K    II   +AN   +
Sbjct: 435 SKKFNSNRFLMLLTLLRKTCNHPDLVLQERPEDYGDISRSTKLKVAMDIIEKWEANGDKV 494

Query: 72  IVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           ++       L  +     +              ++ K    ++ ++ +  + LL      
Sbjct: 495 LIFTQTIQMLDIIHDTLAKHYGQCRMARIDGEVSIKKRAKLLESFHSDENMFLLLLTTRV 554

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL    N ++ F   W+        +     R  + G  R V +Y LI+ +T++E
Sbjct: 555 GGVGLNLT-CANRVLIFDPDWNPMT-----DSQARERSYRIGQNRDVVIYRLISAHTVEE 608

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +  R   K  + + +L+ 
Sbjct: 609 KIYHRQIYKFYMSEKILSD 627


>gi|298254459|ref|ZP_06978045.1| SNF2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 146

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           DL              +     + +N+G+         + G GLNL  G + ++   LWW
Sbjct: 12  DLGLTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLT-GADTVILVDLWW 70

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +       +E   + R  + G +  V VY L+ + TI+E + +    K  +   +L+  +
Sbjct: 71  NPA-----VEAQAIGRAHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHLVSQVLDGTE 125

Query: 200 KET 202
              
Sbjct: 126 SRG 128


>gi|91090218|ref|XP_968156.1| PREDICTED: similar to E1a binding protein P400 [Tribolium castaneum]
          Length = 2612

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++A+  V    +    +    K++ L+ ++ K  +    +++       L  L+    
Sbjct: 1437 LHRIASAMVTQFPDPRLIQYDCGKLQTLDKLLRKLKSEGHRVLIFTQMTKMLDVLEAFLN 1496

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1497 FHGHIYLRLDGTTKVDQRQLLMERFNGDTRIFAFILSTRSGGIGVNLT-GADTVIFYDSD 1555

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1556 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEENILKKANQKRLLGDLAIEG 1609


>gi|19113394|ref|NP_596602.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|74676047|sp|O60177|YG42_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C23E6.02
 gi|3116120|emb|CAA18870.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 1040

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +K + E   +L  +     N         Q+        +        ++ + A++ II+
Sbjct: 826  NKLRTENISELLPKQYS--NILEN----RQMGMKIFTDPKHWTTSTKIEKALNAVKEIIK 879

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
            K     I++   F S L      F Q             T +++   I    +  + +L 
Sbjct: 880  KQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLL 939

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   GLNL    N ++    +W+       IE   V R  + G  + V +  ++  
Sbjct: 940  ISLKAGNVGLNLT-CANHVIILDPFWNP-----YIEEQAVDRAHRIGQDKPVNILRIVTN 993

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            NTI+E VL     K  + D  L  
Sbjct: 994  NTIEERVLALQDRKRELIDSALGE 1017


>gi|73951125|ref|XP_849509.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 2 [Canis familiaris]
 gi|73951131|ref|XP_536179.2| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 1 [Canis familiaris]
          Length = 1827

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|73951147|ref|XP_859355.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 12 [Canis familiaris]
          Length = 1851

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|68483984|ref|XP_714082.1| hypothetical protein CaO19.11916 [Candida albicans SC5314]
 gi|68484390|ref|XP_713881.1| hypothetical protein CaO19.4437 [Candida albicans SC5314]
 gi|46435400|gb|EAK94782.1| hypothetical protein CaO19.4437 [Candida albicans SC5314]
 gi|46435612|gb|EAK94990.1| hypothetical protein CaO19.11916 [Candida albicans SC5314]
          Length = 859

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEKH 47
            Q+ LY  +  ++I+A N             +  ++  +  N    +             
Sbjct: 216 MQKNLYQKILEKDIDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGVEPGPPYTTDE 275

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LD 95
               + +K+  L+ ++   +   + +++    +  L  L+                    
Sbjct: 276 HLVYNSQKMLILDQLLKKFQQEGSRVLIFSQMSRMLDILEDYCYFREYQYCRIDGQTEHS 335

Query: 96  KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I E+N+      +      + G G+NL    +I++ F   W+ +      +   +
Sbjct: 336 DRINAIDEYNKPGSEKFIFLLTTRAGGLGINLTS-ADIVILFDSDWNPQA-----DLQAM 389

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V V+  I +  I+E VL+R   K  +  L++   +
Sbjct: 390 DRAHRIGQTKQVKVFRFITERAIEEKVLERAAQKLRLDQLVIQQGR 435


>gi|126291802|ref|XP_001381614.1| PREDICTED: similar to chromodomain helicase DNA binding protein 6,
           [Monodelphis domestica]
          Length = 2716

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K Y     + +  L          N  +  ++  +  N     +  +        K  + 
Sbjct: 706 KYYRAILEKNFSFLAKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 765

Query: 60  EVIIEKAN----------------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           + +  +                           +++       L  L+    Q R   + 
Sbjct: 766 DSLDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 825

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 826 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 882

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 883 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 936


>gi|302414008|ref|XP_003004836.1| chromodomain helicase hrp3 [Verticillium albo-atrum VaMs.102]
 gi|261355905|gb|EEY18333.1| chromodomain helicase hrp3 [Verticillium albo-atrum VaMs.102]
          Length = 1326

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           ++ Y       Y  L     +  +  +  ++  +++N    +   +              
Sbjct: 608 LEYYKNILTRNYAALSDATGQKNSLLNIMMELKKVSNHPYMFGGAEDRVLAGSTRREDQV 667

Query: 52  -----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 668 KGLIASSGKMMLLDQLLTKLKKDGHRVLIFSQMVKMLDILGDYLALRGYKFQRLDGTIAA 727

Query: 98  ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  +N              + G G+NL    + +V F   W+ +      +   
Sbjct: 728 GPRRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQA 781

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G K+ V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 782 MGRAHRIGQKKPVSIYRLVSKETVEEEVLERARNKLLLEYLTIQA 826


>gi|195020242|ref|XP_001985154.1| GH16907 [Drosophila grimshawi]
 gi|193898636|gb|EDV97502.1| GH16907 [Drosophila grimshawi]
          Length = 2013

 Score = 93.7 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEE---------KH 47
              Q++ Y  +  +N EA NS          +  +   +  N    +              
Sbjct: 981  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSASEEAPTSAGGI 1040

Query: 48   WKEVHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
            ++ +   K     V++ K           +++       L  L+      +   +     
Sbjct: 1041 YELLSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGS 1100

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1101 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1154

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1155 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1200


>gi|45384078|ref|NP_990470.1| probable global transcription activator SNF2L2 [Gallus gallus]
 gi|996020|emb|CAA62832.1| BRM protein [Gallus gallus]
          Length = 1568

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 973  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1032

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1033 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1092

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1093 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1148

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1149 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1197


>gi|114658989|ref|XP_001170614.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 1
           [Pan troglodytes]
          Length = 1531

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|149244356|ref|XP_001526721.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449115|gb|EDK43371.1| chromo domain protein 1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1500

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 37/224 (16%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y     + Y  L  G      +  +   +  + +N    +D  +                
Sbjct: 661 YKNIITKNYAALNAGNKGSQISLLNVMSELKKASNHPYLFDGAEERVLSRAGSYSRENVL 720

Query: 51  ----VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
               +   K+  LE ++   K     +++       L  L                G   
Sbjct: 721 KGMVMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYMSIKGYAFQRLDGGIPS 780

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +   +I  +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 781 SQRRISIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQA 834

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 835 MARAHRIGQKNQVLVYRFVSKDTVEEQILERARKKMILEYAIIS 878


>gi|328862983|gb|EGG12083.1| hypothetical protein MELLADRAFT_32790 [Melampsora larici-populina
           98AG31]
          Length = 830

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 66/206 (32%), Gaps = 33/206 (16%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIEK-- 65
           +++      +  ++  ++ N    +D                     K+  L+ ++    
Sbjct: 546 KSVNQMKLQNVMMQLRKVCNHPWLFDWPIDPTTGTYSVGSGLITSSGKMLLLDKLLHVLF 605

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWNE---GKIP 110
                +++   F S L  +                      ++                 
Sbjct: 606 DRGHKVLIFSQFTSMLDIIHDWANDLKGWKVCRIDGSTSQDERRAQMKDFNQNHGPDGCS 665

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      + G G+NL    + ++ F   W+ ++     +     R  + G  + V V+ L
Sbjct: 666 LFLLSTRAGGVGINLVA-ADTVILFDSDWNPQQ-----DLQAQDRVHRIGQTKPVLVFRL 719

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++ NTI+  +LQ+   K  ++ L++ 
Sbjct: 720 VSGNTIETKMLQKASQKRKLETLVIG 745


>gi|299115201|emb|CBN74032.1| Putative ATP-dependent helicase YFR038W [Ectocarpus siliculosus]
          Length = 896

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 71/215 (33%), Gaps = 32/215 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------------DEK 55
           R+   D+  E     +  +  +   ++      + E K                     K
Sbjct: 521 RQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEILVRASGK 580

Query: 56  IKALEVIIEKAN--AAPIIVAYHFN------SDLARLQKAFPQ-----GRTLDKDPCTIQ 102
           +  ++ +++K +     +++            D  R +             LD+     +
Sbjct: 581 VALMDRMLKKLHAGGHKVLIFSQMTSLLDVLEDYLRHRGWEFHRIDGSTDVLDRQRQIEE 640

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             +  K  +      + G G+NL    +  + F   W+  +     +   + R  + G +
Sbjct: 641 FNSNPKFFVFLLSTRAGGLGINLCA-ADTCILFDSDWNPHQ-----DSQAMARCHRIGQQ 694

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V VY L+   +++  ++ +  +K  ++ + +  
Sbjct: 695 KPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQG 729


>gi|259488679|tpe|CBF88314.1| TPA: SNF2 family helicase/ATPase PasG, putative (AFU_orthologue;
           AFUA_1G13010) [Aspergillus nidulans FGSC A4]
          Length = 868

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L    I      +  ++     N     Y+   +    +         K+
Sbjct: 569 EEIERANTIKLAKREIAQKKMQNPVMQARLACNSPHNFYWPWAEDPSSIDETLVTASGKM 628

Query: 57  KALEVIIEK--ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQE 103
             L+ +I         I++   F               +          +       I+ 
Sbjct: 629 LLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKA 688

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 689 FNTDKDYKIFLLSTRAGGQGINLVA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 742

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K +++
Sbjct: 743 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSL 783


>gi|294656433|ref|XP_002770263.1| DEHA2D05456p [Debaryomyces hansenii CBS767]
 gi|199431470|emb|CAR65619.1| DEHA2D05456p [Debaryomyces hansenii]
          Length = 838

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 49/244 (20%)

Query: 2   KQYHKFQRE-LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------------- 45
           K Y  F        L                  +L N     +                 
Sbjct: 520 KLYEYFVTSPEIKKLLKGVGSQP--LKAIGMLKKLCNHPDLLNLPDDLDGCDSLIPEDYV 577

Query: 46  ---------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                    +  +     K   LE  + K        I++  ++   L  ++K       
Sbjct: 578 PAIGNGNRSREIQTWFSGKFMLLERFLHKIRTETNDKIVLISNYTQTLDLIEKMCRYKKY 637

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     ++K    +  +N+ +    +      + G G+NL  G N L+     W+ 
Sbjct: 638 ANVRLDGTMNINKRQKLVDRFNDPEGSEFIFLLSSKAGGCGINL-IGANRLILIDPDWNP 696

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++  K++
Sbjct: 697 ASDQ-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKLSLSSCVVDE-KED 750

Query: 202 TIHV 205
              +
Sbjct: 751 VERL 754


>gi|312372079|gb|EFR20122.1| hypothetical protein AND_20633 [Anopheles darlingi]
          Length = 2227

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
            K Y       Y  L       A +  +  +   +  N    +               E+ 
Sbjct: 1070 KYYKYILTRNYEALNPKGGGGACSLINIMMDLKKCCNHPYLFAAAAEEATLGPGGNYELQ 1129

Query: 53   D-------EKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                      +    + + K+    +++       L              +    G T  
Sbjct: 1130 SLTKAAGKLVLLEKMLKLLKSQGHRVLIFSQMTKMLDILEDFLEGLGYKYERIDGGITGS 1189

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P         + G G+NL    + ++ +   W+        +    
Sbjct: 1190 IRQEAIDRFNAPGAPQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1243

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1244 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1285


>gi|45382655|ref|NP_990041.1| DNA repair and recombination protein RAD54B [Gallus gallus]
 gi|51316526|sp|Q9DG67|RA54B_CHICK RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|9957289|gb|AAG09308.1|AF178529_1 Rad54b [Gallus gallus]
          Length = 918

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 58/255 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDE-------------- 44
           ++ Y K          LQG    + +         +L N      +              
Sbjct: 563 LELYRKLLSSRVISSCLQGRLENSPH-LICIGALKKLCNHPCLLFKALKEKCCDPKSDEH 621

Query: 45  ------------------EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLA 82
                                + E+   K++ L  ++      +++  +++  ++   L 
Sbjct: 622 VESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLN 681

Query: 83  -RLQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
             L+     G +  +             +  +N    P  +      + G GLNL  G +
Sbjct: 682 VLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNL-VGAS 740

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   + R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 741 HLILYDIDWNPAT-----DIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDL 795

Query: 191 QDLLLNALK-KETIH 204
              +++  K  E IH
Sbjct: 796 SGAVVDLSKTSEHIH 810


>gi|114675380|ref|XP_512384.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 [Pan troglodytes]
          Length = 1657

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1016 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1075

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1076 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1135

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1136 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1191

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1192 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1240


>gi|321458928|gb|EFX69988.1| hypothetical protein DAPPUDRAFT_202549 [Daphnia pulex]
          Length = 621

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 71/212 (33%), Gaps = 31/212 (14%)

Query: 13  CDLQGENIEAFNSASK--TVKCLQLANGAVYYDEE----------KHWKEVHDEKIKALE 60
            D++    +  N   +   ++  ++ N       E                   K+  ++
Sbjct: 329 ADIEDIEAKCTNIKMQNPFMQLKKIVNHPHLVKWEIDAETGEYVVDESMVKDSGKLTVMD 388

Query: 61  VIIEK--ANAAPIIVAY----------HFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEG 107
            ++ +   +   +++             + S              L+     +  + N+ 
Sbjct: 389 QMLTRLIKDGHKVLIFSTLTMLLDVLADYLSMRDMKFCRLDGRMNLEDRATDMDTFRNDP 448

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+ L    + ++ +   W+ +      +     R  + G  + V V
Sbjct: 449 DTSVFLISTRAGGLGITLTS-ADTVIIYDSDWNPQ-----CDLQAQDRCHRIGQTKPVVV 502

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y L+A +T+D+ +++R   K  ++ L++   K
Sbjct: 503 YRLVAADTVDQRIIERAGAKRKLEKLVIQKGK 534


>gi|242006444|ref|XP_002424060.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212507366|gb|EEB11322.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1457

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G    A          +  V+  +L N    + + +     H    
Sbjct: 899  LYRHMQSKGVLLTDGSEKGAKGKGGAKALMNTIVQLRKLCNHPFLFQQIEEKYCDHVGAA 958

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++       +  ++             
Sbjct: 959  SGVVSGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLTWRNFSYLRL 1018

Query: 91   --GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +N  + +  L      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1019 DGATKSEDRGELLRRFNSKDSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1074

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1075 --DLQAQDRAHRIGQQNEVRVLRLLTVNSVEERILAAARYKLNMDEKVIQA 1123


>gi|322491113|emb|CBZ26378.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1284

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
               K++ LE  +   + +   +++   F   L  L++     G    +            
Sbjct: 867  DCGKLQFLETALKKMRNDGHRMLIFTQFVHMLNILERFLALIGVVYTRLDGSTKAELRQQ 926

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N + +I  +     S G GLNL  G + ++F+   W+       ++     R  +
Sbjct: 927  YVDRFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT-----MDLQAQDRCHR 980

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI+++T++E +L++ R +  + ++++
Sbjct: 981  IGQTRPVTIYRLISEHTVEESILEKARERKKLNNVVI 1017


>gi|297707107|ref|XP_002830358.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like [Pongo
           abelii]
          Length = 2499

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEK-----HWKEVHD- 53
           K Y     + +  L          N  +  ++  +  N     +  +      +++ H  
Sbjct: 687 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 746

Query: 54  --------------EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 747 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 806

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 807 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 863

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 864 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|158255470|dbj|BAF83706.1| unnamed protein product [Homo sapiens]
          Length = 1162

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 972  VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1032 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1090

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1091 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|3702846|gb|AAC64044.1| RNA polymerase II termination factor [Homo sapiens]
          Length = 1162

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 972  VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1032 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1090

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1091 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|312221230|emb|CBY01171.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1275

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++++       +++ +     +  +++                    +  
Sbjct: 990  DSGKLAQLDALLKELKAGDHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1049

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  ++  I +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1050 TVADFQSDRSIFVFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHR 1103

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V VY LI + TI+E + +R   K  +Q ++++ 
Sbjct: 1104 LGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISG 1142


>gi|114658975|ref|XP_001170775.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 9
           [Pan troglodytes]
          Length = 1834

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 732 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 791

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 792 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 851

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 852 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 905

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 906 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 949


>gi|73986636|ref|XP_853739.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 2
            [Canis familiaris]
          Length = 1673

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|40807471|ref|NP_003585.3| transcription termination factor 2 [Homo sapiens]
 gi|73920148|sp|Q9UNY4|TTF2_HUMAN RecName: Full=Transcription termination factor 2; AltName:
            Full=Lodestar homolog; AltName: Full=RNA polymerase II
            termination factor; AltName: Full=Transcription release
            factor 2; Short=F2; Short=HuF2
 gi|55665021|emb|CAH71961.1| transcription termination factor, RNA polymerase II [Homo sapiens]
 gi|55959604|emb|CAI12738.1| transcription termination factor, RNA polymerase II [Homo sapiens]
 gi|119577070|gb|EAW56666.1| transcription termination factor, RNA polymerase II, isoform CRA_a
            [Homo sapiens]
 gi|119577071|gb|EAW56667.1| transcription termination factor, RNA polymerase II, isoform CRA_a
            [Homo sapiens]
          Length = 1162

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------------- 52
               +  S+ ++  Q               E+                             
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 53   ----------------------DEKIKALEVIIEKANAAPIIVAYHFNSDLA-------- 82
                                     +  LE I   + +   ++   + + L         
Sbjct: 972  VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 83   --RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +    ++ +N  +   ++     + G GLNL  GGN L    + W
Sbjct: 1032 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1090

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1091 NPSLEDQACDRI-----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 1143


>gi|326668862|ref|XP_699360.4| PREDICTED: chromodomain-helicase-DNA-binding protein 6 [Danio
           rerio]
          Length = 2902

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 725 KYYRAILEKNFAFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFRKTYSS 784

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    ++V       L  L+    Q R   + 
Sbjct: 785 DAADFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRRYTYER 844

Query: 98  ----------PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  ++  +    +      + G G+NL    +  + F   W+ +   
Sbjct: 845 IDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 901

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 902 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 955


>gi|320169825|gb|EFW46724.1| DNA repair protein RAD54 [Capsaspora owczarzaki ATCC 30864]
          Length = 941

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 50/241 (20%)

Query: 2   KQYHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----------- 45
           + Y         ++L      +   A +         +L N      E            
Sbjct: 530 QLYEALIKSKAVKKLIASSASDGQTAAS-LGSITLLKKLCNHPDLIYEACQENFRELLPL 588

Query: 46  ------------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP- 89
                       + +   H  K + L+ ++   +      +++  ++   +   +     
Sbjct: 589 FPPEYGVKNKRGRTFNPAHSGKFQVLDTMLAYVKSTTNDRVVLISNYTQTIDLFEDLARL 648

Query: 90  QGRTLDK---------DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLW 138
           +G    +             + E+N     +        + G G+NL  GGN LV F   
Sbjct: 649 RGYRFVRLDGTLSVKARQKLVDEFNNPSSNVFLFLLSSKAGGCGINL-IGGNRLVLFDPD 707

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+        +   + R  + G K+ V++Y  +   TI+E + QR   K  +   +++  
Sbjct: 708 WNPAS-----DGQAMARVWRDGQKKKVYLYRFLGTGTIEEKIFQRQAHKMALSSCVVDEE 762

Query: 199 K 199
           +
Sbjct: 763 E 763


>gi|302830624|ref|XP_002946878.1| hypothetical protein VOLCADRAFT_120343 [Volvox carteri f.
            nagariensis]
 gi|300267922|gb|EFJ52104.1| hypothetical protein VOLCADRAFT_120343 [Volvox carteri f.
            nagariensis]
          Length = 2539

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 2    KQYHKFQRELYCDLQGENIEA-----FNSASKTVKCLQLANGAVYYD---EEKHWKEVHD 53
            + Y       + +L   ++ +      +  +   +  +  N    ++   E     E   
Sbjct: 826  QYYKWILTRNFKELNKGSLGSHGGGHVSLLNIIGELKKCCNHPFLFESAEENYRGSEDDK 885

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--L 111
              +  +  II             +        +              ++ +N  + P   
Sbjct: 886  SAMVRVLDII-----------SDYMRHRGFTHQRLDGSTPAAARHAAMEHFNRPESPDFA 934

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G G+NL    + ++ F   W+ +      +   ++R  + G    V +Y  +
Sbjct: 935  FLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRAHRIGQTETVNIYRFV 988

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +++E +L+R + K  +  L   + K+
Sbjct: 989  TSGSVEEDILERAKRKMVLDHLAGASAKQ 1017


>gi|312211534|emb|CBX91619.1| similar to chromatin remodelling complex ATPase chain ISW1
           [Leptosphaeria maculans]
          Length = 1189

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           ++ Y K   +    + G            +  ++  +  N    +               
Sbjct: 507 VQWYKKILEKDIDAVNGGAGTKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 566

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKD 97
             +  K+  L+ ++   KA  + +++    +                          +  
Sbjct: 567 VTNAAKMVMLDKLLKRMKAKGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGSTAHEDR 626

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      L      + G G+NL    +++V F   W+ +      +   + R
Sbjct: 627 IQAIDDYNKEGSEKFLFLLTTRAGGLGINLTT-ADVVVLFDSDWNPQA-----DLQAMDR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V+V+  + ++ I+E VL+R   K  +  L++   +
Sbjct: 681 AHRIGQTKQVYVFRFVTESAIEEKVLERAAQKLRLDQLVIQQGR 724


>gi|170036699|ref|XP_001846200.1| chromodomain helicase-DNA-binding protein 3 [Culex quinquefasciatus]
 gi|167879513|gb|EDS42896.1| chromodomain helicase-DNA-binding protein 3 [Culex quinquefasciatus]
          Length = 1982

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            K Y       +  L       A +  +  +   +  N    +        +         
Sbjct: 1007 KYYKYILTRNFEALNPKGGGGACSLINIMMDLKKCCNHPYLFQAAVEEAPLGPGGNYEIT 1066

Query: 53   -----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA----------FPQGRTLD 95
                   K+  LE ++++       +++       L  ++               G T  
Sbjct: 1067 ALTKAAGKLVLLEKMLKQLKETGHRVLIFSQMTKMLDIMEDFLEGIGYKYERIDGGITGT 1126

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1127 LRQEAIDRFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1180

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1181 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1222


>gi|195384048|ref|XP_002050736.1| GJ20044 [Drosophila virilis]
 gi|194145533|gb|EDW61929.1| GJ20044 [Drosophila virilis]
          Length = 3256

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
              L    I A  +     + +Q   G +   +      +   K+    V+I       + 
Sbjct: 1637 LTLLHPIISAMTTQFPDPRLIQYDCGKLQTLDR----LLRQLKVDGHRVLIFTQMTKMLD 1692

Query: 73   VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
            V   F +    +         +++    ++ +N + +I        S G G+NL  G + 
Sbjct: 1693 VLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADT 1751

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + 
Sbjct: 1752 VIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTIEVNILKKANQKRMLS 1806

Query: 192  DLLLNA 197
            D+ +  
Sbjct: 1807 DIAIEG 1812


>gi|310800555|gb|EFQ35448.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1107

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 19/182 (10%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ----- 90
            N   Y  + +    +   KI+ +  I+  + +    IV   F S +  ++  F +     
Sbjct: 865  NDTNYNPDGQVSHILASAKIRQMMQILHKEVDQHKFIVFSQFTSMMDLVEPFFRKEGFKF 924

Query: 91   -----GRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+   ++    N+    +L         GLNL      ++    +W+    
Sbjct: 925  TRYDGSMKNDEREASLHRLRNDKNTRILLCSLKCGSLGLNLTA-ATRVIILEPFWNP--- 980

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETI 203
               +E   + R  +      V VY L  + T++E +L     K  + +  +   +KK+  
Sbjct: 981  --FVEEQAIDRVHRLTQTVDVIVYKLTVEKTVEERILALQEKKRLLAETAIEGGMKKDAF 1038

Query: 204  HV 205
             +
Sbjct: 1039 KL 1040



 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVY 41
           + Y + +    E    +    ++  N+    ++  Q  N    
Sbjct: 571 RFYDRLETRADESIERMLKGKVDYANALVLLLRLRQACNHPKL 613


>gi|193712533|ref|XP_001943954.1| PREDICTED: putative DNA helicase Ino80-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1335

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 29/179 (16%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            S   K  Q           ++ + +   ++  +  I+E+      +          R  +
Sbjct: 1021 SLLTKLKQ-----------ENHRVLIYSQMTRMIDILEEYMWYKKL----------RYMR 1059

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1060 LDGSSKISERRDMVADFQNRSDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1114

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETI 203
             +++  + R  + G  + V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+
Sbjct: 1115 -VDQQAMDRAHRLGQTKQVTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTL 1172


>gi|331000570|ref|ZP_08324240.1| helicase protein [Parasutterella excrementihominis YIT 11859]
 gi|329571277|gb|EGG52970.1| helicase protein [Parasutterella excrementihominis YIT 11859]
          Length = 133

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                        +    ++ +  G +PL      + G GLNL    + ++    WW+  
Sbjct: 6   IEYLYLDGSVPAAQRKKLVETFQNGDMPLFLISLKAGGTGLNLTA-ADYVIHLDPWWNPA 64

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +E     R  + G KR V +Y LI++ T+++ +L+  +TK  + D LL  
Sbjct: 65  -----VEDQASDRAYRIGQKRPVTIYKLISEKTVEQKILELHKTKKNLADALLEG 114


>gi|73997434|ref|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 19 [Canis familiaris]
          Length = 1887

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 30/218 (13%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            K Y       +  L         +  +  +   +  N    + E                
Sbjct: 963  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPEAPKMPNGMYDGSALIR 1022

Query: 52   --HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
                  +    +   K     +++       L  L+               G T +    
Sbjct: 1023 ASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQE 1082

Query: 100  TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N              + G G+NL    + ++ +   W+        +    +R  
Sbjct: 1083 AIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRAH 1136

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1137 RIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1174


>gi|20809475|gb|AAH29381.1| HELLS protein [Homo sapiens]
          Length = 348

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 74  MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 133

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 134 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 193

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +    + +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 194 TA-ADTVIIYDSDCNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 247

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 248 AKRKLEKLIIH 258


>gi|330919879|ref|XP_003298794.1| hypothetical protein PTT_09611 [Pyrenophora teres f. teres 0-1]
 gi|311327831|gb|EFQ93101.1| hypothetical protein PTT_09611 [Pyrenophora teres f. teres 0-1]
          Length = 1239

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 52   HDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
               KI+ L  I+ ++  +  +IV   F S L  ++    +            R   ++  
Sbjct: 1008 PSTKIRQLLAILSQETPSHKVIVFSQFTSMLDLIEPFLRRASYTYTRYDGSMRNDHREAS 1067

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +  ++    +L         GLNL    + +V    +W+       +E   + R  + 
Sbjct: 1068 LHKLRSDPHTRVLLCSLKCGSLGLNLTA-ASRVVIMEPFWNP-----FVEEQAIDRVHRL 1121

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 V VY L  +++++E +L+    K  + +  +   K 
Sbjct: 1122 NQTVDVTVYRLSIRDSVEERILELQEAKRKLANAAIEGGKA 1162



 Score = 38.2 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 4/43 (9%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           Y + Q      L     GE  +   +    ++  Q  N     
Sbjct: 678 YTRLQDRTQARLDEMMGGEKQDYIGALVLLLRLRQACNHPDLV 720


>gi|226290256|gb|EEH45740.1| chromodomain helicase hrp3 [Paracoccidioides brasiliensis Pb18]
          Length = 1521

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 37/236 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 707 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 766

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 767 MRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 826

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 827 AGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 880

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIHV 205
            + R  + G  + V VY L++++T++E VL+R R K  ++ + +      KE I +
Sbjct: 881 AMARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLLEFITIQRGVTDKEAIEL 936


>gi|114658977|ref|XP_001170676.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 4
           [Pan troglodytes]
 gi|114658979|ref|XP_001170719.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 6
           [Pan troglodytes]
 gi|114658981|ref|XP_001170756.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 8
           [Pan troglodytes]
          Length = 1828

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|39968181|ref|XP_365481.1| hypothetical protein MGG_02183 [Magnaporthe oryzae 70-15]
 gi|145013063|gb|EDJ97704.1| hypothetical protein MGG_02183 [Magnaporthe oryzae 70-15]
          Length = 1912

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ K        ++       L  L++ 
Sbjct: 1576 KRLLQYDCG----------------KLQALDRLLRKLQAGGHRALIFTQMTKVLDILEQF 1619

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1620 LNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYD 1678

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1679 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1733

Query: 197  ALK 199
              +
Sbjct: 1734 EGE 1736


>gi|2645431|gb|AAB87382.1| CHD2 [Homo sapiens]
          Length = 1739

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|119470473|ref|XP_001258040.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119406192|gb|EAW16143.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1148

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                +   + +   KI+ L  I+  +A     IV   F S L +++    +         
Sbjct: 898  LNPGDNETQVLPSTKIRHLMKILRREAGDYKFIVFSVFTSMLDKIEPFLKRAGIGFARYD 957

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  +     +L     +   GLNL    + +V    +W+       +
Sbjct: 958  GSMRNDLREASLDRLRHNSATRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1011

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y +I ++T++E +L+    K  + +L +  
Sbjct: 1012 EEQAIDRVHRLNQTVDVKIYKMIIKDTVEERILELQDRKRELANLTIEG 1060



 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    G  ++   +    ++  Q  N     
Sbjct: 649 MNFYKRLEQRTENSLEKMMGGSKVDYAGALVLLLRLRQACNHPDLV 694


>gi|296825556|ref|XP_002850834.1| transcriptional accessory protein [Arthroderma otae CBS 113480]
 gi|238838388|gb|EEQ28050.1| transcriptional accessory protein [Arthroderma otae CBS 113480]
          Length = 1905

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +     EA  +         +L N      +E H +              
Sbjct: 1585 QKEQKDIANKVGSSEKEAKEHIFQALQYMRRLCNSPALVMKEGHKQYHQVQKLLASKNSH 1644

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKA 87
                 H  K+ AL  ++                      +    ++       L  +Q  
Sbjct: 1645 IRDIAHAPKLSALRDLLIDCGIGVDPSAEGELATGASYVSPHRALIFCQMKEMLDIVQND 1704

Query: 88   F-------------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1705 VLRKLLPSVQFLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1763

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1764 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVTST 1818

Query: 194  LLN 196
            ++N
Sbjct: 1819 VVN 1821


>gi|194874037|ref|XP_001973329.1| GG16034 [Drosophila erecta]
 gi|190655112|gb|EDV52355.1| GG16034 [Drosophila erecta]
          Length = 869

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 74/222 (33%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           K Y     + +  L+ +      +  +  ++  +  N    +        +         
Sbjct: 494 KFYKFILTKNFKALKQKGGGGVCSLLNIMMELRKCCNHPYLFPSAAEDASISPSGLYEIN 553

Query: 53  -----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K++ L  ++++  A+   +++       L  L+    +     +         
Sbjct: 554 SLIKASGKLELLSKMLKQLKADNHRVLIFSQMTKMLNILENFLEEEGYQYERIDGLIKGD 613

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N  K    +      + G G+NL    + ++ F   W+        +    
Sbjct: 614 LRQRAIDRFNAPKAEQFVFLLSTRAGGLGINL-ATADTVIIFDSDWNP-----HNDVQAF 667

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  +  N+++E ++Q  + K  +  L++
Sbjct: 668 SRAHRMGQTKKVMIYRFVTHNSVEERMMQVAKHKMMLTHLVV 709


>gi|168052769|ref|XP_001778812.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162669818|gb|EDQ56398.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 2126

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 48/243 (19%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y    ++ Y  L   N      +     +    + N    +     E     E+     
Sbjct: 1095 LYGAILKKNYKQLNRGNTTGKKRSLNFILMDLKMVCNHPYLFPGKEPELGDPDELFRLLV 1154

Query: 53   --DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K + LE ++   K     +++       L  L+                    +  
Sbjct: 1155 TASGKFQLLEKLLPRLKEGGHRVLLFSQMTGMLDILEDFLTHLNFKFCRIDGSTLASERQ 1214

Query: 99   CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFF-----------------SLWW 139
              I ++N     I +      + G G+NL      L +                     +
Sbjct: 1215 KQIADFNSTNSDIFIFLISTRAGGLGINLISLMLKLCWEGIRKFWLVLHFASLSATDPDF 1274

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +       ++     R  + G +  V VY LI + +++E +++R R K  +++L++++ +
Sbjct: 1275 NP-----FVDLQAQARAHRIGQENVVLVYQLITKCSVEEKIIERSRQKLAMENLVMSSSE 1329

Query: 200  KET 202
            K+T
Sbjct: 1330 KDT 1332


>gi|119604572|gb|EAW84166.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 4, isoform CRA_e [Homo
           sapiens]
          Length = 1275

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 668 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 727

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 728 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 787

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 788 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 843

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 844 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 892


>gi|42564102|ref|NP_187887.3| PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA
            binding / helicase/ nucleic acid binding [Arabidopsis
            thaliana]
 gi|30984019|gb|AAP40633.1| photoperiod independent early flowering1 [Arabidopsis thaliana]
          Length = 2055

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 11/167 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +     +    +   K      +I       + V   F +           
Sbjct: 1068 RLIQFDCGKLQ----ELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDG 1123

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1124 STPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1177

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +    R  + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1178 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1224


>gi|240274068|gb|EER37586.1| RSC complex subunit [Ajellomyces capsulatus H143]
          Length = 518

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 66/196 (33%), Gaps = 30/196 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDE----------KIKALEVIIEKAN--AAPIIVAY 75
             ++  +L N    ++  +                  K + L+ I+ K       +++ +
Sbjct: 1   MLMQLRKLCNHPFVFESVEDEMNPGRATNDLIWRTAGKFELLDRILPKFQASGHRVLMFF 60

Query: 76  HFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
                +  ++                   D     ++E+N              + G GL
Sbjct: 61  QMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKEFNAPGSDYFCFLLSTRAGGLGL 120

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ +   W+  +     +     R  + G K  V +  LI  N+++E +L+ 
Sbjct: 121 NLQT-ADTVIIYDSDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITSNSVEERILEA 174

Query: 184 LRTKSTIQDLLLNALK 199
            + K  +   ++ A K
Sbjct: 175 AQFKLDMDGKVIQAGK 190


>gi|308808065|ref|XP_003081343.1| RA54B_CHICK DNA repair and recombination protein RAD54B (ISS)
           [Ostreococcus tauri]
 gi|116059805|emb|CAL55512.1| RA54B_CHICK DNA repair and recombination protein RAD54B (ISS)
           [Ostreococcus tauri]
          Length = 792

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 23/208 (11%)

Query: 3   QY-HKFQ-RELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIK 57
            Y  + + + +   L   G+  +A +  S      +L N A    E      +    K+ 
Sbjct: 483 LYVEQLKAKSMQAMLGRIGKTDDAISPLSAIQTLQKLCNAAALASEAHRDDPIETSSKLC 542

Query: 58  ALEVIIEKAN-AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE 106
            L  +         I++   F + L                             ++++N 
Sbjct: 543 VLRSMFRALPSDERIVIVSGFTTTLDLIALLCEGEKLKYDRLQGSTPPKDRTAIVRKFNT 602

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +L     + G GLNL  G N LV     W+        +     R  + G  +   
Sbjct: 603 TG-RILLLSTKAGGVGLNL-VGANRLVLVDSSWNPAH-----DLQAQARIWREGQTKKCT 655

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +Y L++  TI+E + QR   K ++   L
Sbjct: 656 IYRLLSTGTIEERMFQRQELKGSLARTL 683


>gi|255082185|ref|XP_002508311.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523587|gb|ACO69569.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1126

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 64/249 (25%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----------------- 45
            Y  F  E           A    +      +L N      +                  
Sbjct: 447 IYRHFLSEKAAKTIATGKSAM-VLAAITGLKKLCNHPKLIHDMISAAKTTNKGAAGFESC 505

Query: 46  -------------------------KHWKEVHDEK---IKALEVIIEKANAAPIIVAYHF 77
                                        E+H  K   +  L  I+ K     +++  ++
Sbjct: 506 ADFFGDGLYDSGARGHGRERGGGGLPEGWELHSGKFAVLARLLAILRKETKDRVVIISNY 565

Query: 78  NSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNL 125
              L  +Q                 ++ K    ++ +N+      +      + G G+NL
Sbjct: 566 TQTLDLIQTLCRNNRYPFCRLDGSTSISKRQKLVKRFNDPAEDCFVFLLSSKAGGCGINL 625

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             GGN LV F   W+        ++    R  + G K+  ++Y  +A  +I+E V QR  
Sbjct: 626 -IGGNRLVLFDPDWNPAN-----DKQAAARCWRDGQKKKCYLYRFLATGSIEEKVFQRQL 679

Query: 186 TKSTIQDLL 194
           +K ++Q+++
Sbjct: 680 SKESLQNVV 688


>gi|156375431|ref|XP_001630084.1| predicted protein [Nematostella vectensis]
 gi|156217098|gb|EDO38021.1| predicted protein [Nematostella vectensis]
          Length = 1872

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 56/232 (24%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKI 56
            ++  +   A +         ++ N  +     +H +                   H  K+
Sbjct: 1576 EMASKKGSA-HIFQALQYLRKVCNHPLLVLTPQHPEHDKIMQQLKETRQSLKDIHHAAKL 1634

Query: 57   KALEVIIEKA------------------NAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             AL+ ++                     +   +++     S L  ++    +        
Sbjct: 1635 VALKQLLLDCGIGVSTSSTSDLASEPVVSQHRVLLFCQLKSMLDIVENDLFKTNMPSVTY 1694

Query: 91   -----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                           +  +N +  I +L       G GLNL  G + ++F    W+    
Sbjct: 1695 LRLDGSTPAGSRHSIVHRFNNDPSIDVLLLTTHVGGLGLNLT-GADTVIFVEHDWNP--- 1750

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              M +   + R  + G K+ V VY L+ + T++E ++   + K TI + +++
Sbjct: 1751 --MKDLQAMDRAHRIGQKKVVNVYRLVTKGTLEEKIMGLQKFKMTIANTVIS 1800


>gi|255079182|ref|XP_002503171.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518437|gb|ACO64429.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1026

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDEEK--------HWKE 50
           + Q+E Y     ++I+  NS        +  ++  +  N    +   +            
Sbjct: 405 EMQKEYYKRALQKDIQVVNSGGDRSRLLNMVMQLRKCCNHPYLFQGAEPGPPFFTDEHLV 464

Query: 51  VHDEKI--KALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK-DP 98
            +  K+      +   K   + +++       L          R +     G T      
Sbjct: 465 ENSGKMVLLDKLLKKLKEKGSRVLIFSQMTRLLDILEDYLLFRRYKYCRIDGNTDGDTRE 524

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N       +      + G G+NL    + +V +   W+ +     ++   + R 
Sbjct: 525 DMIDSYNAPGSEKFVFLLSTRAGGLGINLTT-ADTVVIYDSDWNPQ-----MDLQAMDRA 578

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  + V V+      +++E V+++   K  +  L++   +
Sbjct: 579 HRIGQTKEVSVFRFCTDGSVEEKVIEKAYKKLALDALVIQQGR 621


>gi|195496103|ref|XP_002095551.1| GE22457 [Drosophila yakuba]
 gi|194181652|gb|EDW95263.1| GE22457 [Drosophila yakuba]
          Length = 1982

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS          +  +   +  N    +              
Sbjct: 982  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTSAGGL 1041

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++++  +    +++       L  L+      +   +     
Sbjct: 1042 YEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1101

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1102 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1155

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1156 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1201


>gi|119622565|gb|EAX02160.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622567|gb|EAX02162.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|119622569|gb|EAX02164.1| chromodomain helicase DNA binding protein 2, isoform CRA_a [Homo
           sapiens]
 gi|239740390|gb|ACS13730.1| chromodomain-helicase-dna-binding protein 2 [Homo sapiens]
          Length = 1739

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|119604569|gb|EAW84163.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 4, isoform CRA_b [Homo
           sapiens]
          Length = 1274

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 668 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 727

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 728 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 787

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 788 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 843

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 844 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 892


>gi|121699521|ref|XP_001268048.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119396190|gb|EAW06622.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1147

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                ++  + +   KI+ L  I+  +A+    IV   F S L +++    +         
Sbjct: 896  LNPGDEDDQVLPSTKIRHLMKILRGEADEHKFIVFSVFTSMLDKIEPFLKRAGIGFARYD 955

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  N     +L     +   GLNL    + +V    +W+       +
Sbjct: 956  GSMRNDHREASLNKLRNNSATRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1009

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1010 EEQAIDRVHRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1058



 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    G  ++   +    ++  Q  N     
Sbjct: 647 MNFYKRLEQRTENSLEKMMGGSKMDYAGALVLLLRLRQSCNHPDLV 692


>gi|242017030|ref|XP_002428996.1| lymphoid specific helicase, putative [Pediculus humanus corporis]
 gi|212513842|gb|EEB16258.1| lymphoid specific helicase, putative [Pediculus humanus corporis]
          Length = 806

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 29/193 (15%)

Query: 30  VKCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHF 77
           +   ++ N                           K+  L+ ++ K       +I+   F
Sbjct: 526 MNLRKVVNHPFLIQYPLKEGTEELRIDEDLVKESGKMLVLDALLSKLKSRGHKVIIFSFF 585

Query: 78  NSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
              L  L+                           +  +  +I +      S G G+NL 
Sbjct: 586 KVVLDILEDYVLLRDYQYSRLDGDLNIPKRNEEIQKFMDNPEIFVFLITMRSGGLGINLT 645

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++F+   W+   + Q  +R       + G  + V +Y L  + TIDE +++R   
Sbjct: 646 A-ADTVIFYDSDWNPTINLQSQDRC-----HRIGQSKPVMIYRLCVKGTIDEKIIERANA 699

Query: 187 KSTIQDLLLNALK 199
           K  ++ ++L   K
Sbjct: 700 KRRLEKMILQKGK 712


>gi|170581274|ref|XP_001895612.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158597372|gb|EDP35538.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1965

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 11/169 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            ++ ++   G +          +HD  +     +I    A  + +   F S          
Sbjct: 1327 LRLIEYDCGKLQVL----NSLLHDLFLYKHRCLIFTQMARVLDILQAFLSFHGYQYFRLD 1382

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +++     + +N + KI        S G G+NL  G + ++F+   W+       +
Sbjct: 1383 GTTGIEQRQAMTERFNADPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPT-----M 1436

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G  R V +Y L+++ TI+E +L++   K  + ++ ++ 
Sbjct: 1437 DAQAQDRCHRIGQTRNVTIYRLVSERTIEENILRKAMQKRRLGEMAIDE 1485


>gi|118421089|ref|NP_001262.3| chromodomain-helicase-DNA-binding protein 2 isoform 1 [Homo
           sapiens]
 gi|119370320|sp|O14647|CHD2_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 2;
           Short=CHD-2; AltName: Full=ATP-dependent helicase CHD2
 gi|225000176|gb|AAI72425.1| Chromodomain helicase DNA binding protein 2 [synthetic construct]
          Length = 1828

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|31745178|ref|NP_853634.1| transcription activator BRG1 [Danio rerio]
 gi|30385206|gb|AAP22968.1| brahma protein-like protein 1 [Danio rerio]
 gi|30385209|gb|AAP22969.1| brahma protein-like protein 1 [Danio rerio]
 gi|190340088|gb|AAI63918.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Danio rerio]
 gi|190340090|gb|AAI63920.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Danio rerio]
          Length = 1627

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1019 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1078

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                          K + L+ I+ K  A    +++     + +  ++  F          
Sbjct: 1079 GGIVQGSDLYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRL 1138

Query: 96   -------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        ++ +N+      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1139 DGTTKAEDRGMLLKNFNDPSHQYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1194

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1195 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1243


>gi|26378644|dbj|BAB28757.2| unnamed protein product [Mus musculus]
          Length = 808

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       ++V   
Sbjct: 534 MMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQ 593

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    I  +N +  + L      + G G+NL
Sbjct: 594 MTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINL 653

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 654 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 707

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 708 AKRKLEKLIIH 718


>gi|73951149|ref|XP_859392.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 13 [Canis familiaris]
          Length = 1814

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|73951153|ref|XP_859466.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 15 [Canis familiaris]
          Length = 1812

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|11994423|dbj|BAB02425.1| helicase-like protein [Arabidopsis thaliana]
          Length = 2061

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 11/167 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +     +    +   K      +I       + V   F +           
Sbjct: 1074 RLIQFDCGKLQ----ELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDG 1129

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1130 STPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1183

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +    R  + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1184 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1230


>gi|114658985|ref|XP_510607.2| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 10
           [Pan troglodytes]
          Length = 1739

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|213625823|gb|AAI71410.1| Helicase, lymphoid-specific [Danio rerio]
 gi|213627472|gb|AAI71408.1| Helicase, lymphoid-specific [Danio rerio]
 gi|220677979|emb|CAX14759.1| helicase, lymphoid-specific [Danio rerio]
          Length = 853

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N A   +                     K   L+ ++ +       +++   
Sbjct: 580 LMLLKRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQ 639

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             S L  L                     D+D    +  ++ ++ L      + G G+NL
Sbjct: 640 MTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINL 699

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +      +     R  + G  + V VY LI  NTIDE +L+R  
Sbjct: 700 TS-ADTVIIFDSDWNPQA-----DLQAQDRCHRIGQTKPVVVYRLITANTIDEKILERAS 753

Query: 186 TKSTIQDLLLNALK 199
            K  ++ ++++  K
Sbjct: 754 AKRKLEKMVIHKNK 767


>gi|115939069|ref|XP_001193731.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
            partial [Strongylocentrotus purpuratus]
          Length = 2038

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 67/223 (30%), Gaps = 35/223 (15%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYD---------EEKHWKE 50
            K Y       +  L  +     + +  +  +   +  N    +          +   ++ 
Sbjct: 955  KYYKYILTRNFQALNTKAAGGGSVSLLNIMMDLKKCCNHPYLFPTAAADAQRLQNGAFEV 1014

Query: 51   VHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
            V   K     V++ K       +   +++       L  L+          +        
Sbjct: 1015 VSLIKSCGKLVLLCKMLRMLKKDNHRVLIFSQMTRMLDLLEDFLEGEGYKYERIDGGVTG 1074

Query: 98   ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  I  +N       +      + G G+NL    + ++ +   W+        +   
Sbjct: 1075 GLRQEAIDRFNAPGAEQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQA 1128

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1129 FSRAHRIGQSNKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1171


>gi|330931645|ref|XP_003303483.1| hypothetical protein PTT_15707 [Pyrenophora teres f. teres 0-1]
 gi|311320499|gb|EFQ88422.1| hypothetical protein PTT_15707 [Pyrenophora teres f. teres 0-1]
          Length = 1731

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 73/209 (34%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HDEKIKALEVIIEKA 66
            +  E  N ++  ++  +       Y  E   +                K+  LE+++ K 
Sbjct: 996  KQQERANLSNILMQLRKCLCHPFVYSREIEERSDVAAVSHRNLVEASAKLSLLEMLLPKL 1055

Query: 67   N--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++      +   +              I ++N    PL   
Sbjct: 1056 HERGHRVLIFSQFLDMLNIIEDFLDGMQLSYQRLDGSMGSLEKQKRIDQFNAPDSPLFAF 1115

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     W+  +     +   + R  + G K+ V    L  
Sbjct: 1116 LLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DLQAIARAHRIGQKKKVLCLQLAT 1169

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + +++E ++Q  + K  +  +++  L +E
Sbjct: 1170 RASVEEKIMQMGKKKMALDKVVVQDLDRE 1198


>gi|238487360|ref|XP_002374918.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
 gi|220699797|gb|EED56136.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus flavus
           NRRL3357]
          Length = 682

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 384 LKAIGLLKKLCNHPDLLNLSTDLPGCEFAFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 443

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 444 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNVNKRQKLVDKFNNPDG 503

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 504 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 557

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 558 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 589


>gi|326435102|gb|EGD80672.1| acyl-CoA dehydrogenase domain-containing protein [Salpingoeca sp.
           ATCC 50818]
          Length = 832

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 69/184 (37%), Gaps = 27/184 (14%)

Query: 32  CLQLAN-----GAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARL 84
              L            DE+   +     K   L+ ++ K       +++   F + L  L
Sbjct: 638 LHNLCCTSPPLHPFKLDEDDMMQ---SGKFAVLKDLLHKRSEQGDRVLLFSQFTTMLNIL 694

Query: 85  QKA----------FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           ++                 +++    I ++ N+  I        + G G+NL    N+++
Sbjct: 695 ERFLTSLGISFLRIDGSTPVEERQDLIDKFTNDKSIFCFLLSTKAGGLGINLTA-ANVVI 753

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              + ++        ++    R  + G  + V V  LI++++++E++L+R   K  ++  
Sbjct: 754 LHDIDFNP-----YNDKQAEDRCHRVGQTKPVHVIRLISKDSVEEVMLKRADLKLQLEKD 808

Query: 194 LLNA 197
           +  +
Sbjct: 809 MTQS 812


>gi|312214448|emb|CBX94440.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1719

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 74/212 (34%), Gaps = 31/212 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVH----------DEKIKALEVIIEKA 66
            +  E  N ++  ++  +       Y  E +   ++             K+  LE+++ K 
Sbjct: 997  KQQERANLSNILMQLRKCLCHPFVYSREIEERTDIAAVSHRNLVEASAKLSLLEILLPKL 1056

Query: 67   N--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
                  +++   F   L  ++      +   +              I ++N    PL   
Sbjct: 1057 QERGHRVLIFSQFLDMLNIIEDFLDGMQLSYQRLDGTMGSLEKQKRIDQFNAPDSPLFAF 1116

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     W+  +     +   + R  + G K+ V    L  
Sbjct: 1117 LLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DLQAIARAHRIGQKKKVLCLQLTT 1170

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + +++E ++Q  R K  +  +++  L  + I 
Sbjct: 1171 RASVEEKIMQMGRKKMALDHVVVEQLDTDDIE 1202


>gi|315040818|ref|XP_003169786.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
 gi|311345748|gb|EFR04951.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
          Length = 1050

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             KI+ L  I+++ +     IV   F S L +++     G               ++   
Sbjct: 809 SAKIRHLMRILKRESGQSKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASL 868

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +L     +   GLNL    + +V    +W+       +E   + R  +  
Sbjct: 869 NRLRNSSSTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLN 922

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY L  + T++E +L+    K  +    +  
Sbjct: 923 QTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 959



 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 561 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 603


>gi|505088|dbj|BAA05143.1| transcriptional activator hSNF2b [Homo sapiens]
 gi|902046|gb|AAB40977.1| transcriptional activator [Homo sapiens]
          Length = 1647

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|159130376|gb|EDP55489.1| dsDNA-dependent ATPase Rad54, putative [Aspergillus fumigatus
           A1163]
          Length = 681

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 44/212 (20%)

Query: 26  ASKTVKCLQLANGAVY--------------------------YDEEKHWKEVHDEKIKAL 59
                   +L N                                + K W       +  +
Sbjct: 383 LKAIGILKKLCNHPDLLDLTRDLPGCEHTFPEDYVPPEARGRDRDIKSWYSGKMMVLDRM 442

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
              I +     I++  ++   L   +K                 ++K    + ++N    
Sbjct: 443 LARIRQDTNDKIVLISNYTQTLDLFEKLCRSRGYGSLRLDGTMNINKRQKLVDKFNNPDG 502

Query: 110 --PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G GLNL  G N LV F   W+    Q       + R  + G K+  FV
Sbjct: 503 EEFVFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAADQ-----QALARVWRDGQKKDCFV 556

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Y  IA  +I+E + QR   K ++   ++++ +
Sbjct: 557 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 588


>gi|123454531|ref|XP_001315018.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121897682|gb|EAY02795.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1656

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 41/232 (17%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------- 52
           Y     +    L G      N  +  +   ++          +                 
Sbjct: 454 YRAILEQNSSFLSGGT----NLLNIAMDLRKVCIHPFLIKGAEDKILADMGYTNQPDKAL 509

Query: 53  ------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK------- 96
                   K+  ++ ++   KA+   +++     + L  LQ      G    +       
Sbjct: 510 EAIIRSSGKMILIDKLLPKLKADGHRVLIFSQMTNLLDILQDYLAATGYKFLRLDGQVKP 569

Query: 97  --DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  +N       +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 570 SVRQSLIDHFNAPDSDDFIFLLSTRAGGLGINL-NAADTVIIFDSDWNPQN-----DLQA 623

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R  + G ++ V VY LI + T ++ + +    K  +   +L+  KK+ + 
Sbjct: 624 QARCHRIGQQKTVKVYRLITKGTYEQNMFEISSKKLGLGHAILDKTKKKELD 675


>gi|115727574|ref|XP_001176374.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115939382|ref|XP_001175986.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a5 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 1031

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 52/244 (21%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNSASK---------TVKCLQLANGAVYY------- 42
           K Y      QRE Y  +  ++I+  N A K          +   +  N    +       
Sbjct: 368 KMYVGMSIMQREWYTKILMKDIDVVNGAGKSDKMRLMNILMHLRKCGNHPYLFDGAEPGP 427

Query: 43  -DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                     +  K+  L+ ++ K     + +++       L  L+              
Sbjct: 428 PYTTDKHLVENSGKMSVLDKLLPKLKEQGSRVLIFSQMTRLLDILEDYCVWRGHNYCRLD 487

Query: 98  --------------------PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFF 135
                                 +I  +N       +      + G G+NL    +I+V +
Sbjct: 488 GQTPHAERQVSRLPMPCSHSQESINNFNMPDSEKFVFLLSTRAGGLGINL-ATADIVVLY 546

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+ +     ++   + R  + G K+ V V+  I++NT++E +++R   K  + ++++
Sbjct: 547 DSDWNPQ-----VDLQAMDRAHRIGQKKQVHVFRFISENTVEERIVERAEMKLRLDNIVI 601

Query: 196 NALK 199
              +
Sbjct: 602 QQGR 605


>gi|224004374|ref|XP_002295838.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585870|gb|ACI64555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 153

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              +            ++    ++ +N +  I +L       G GLNL  G + ++F   
Sbjct: 23  HMPSLEYLRLDGKVPSNRRSAIVERFNHDDNIKVLLLTTKVGGLGLNLT-GADKVIFLEP 81

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+       ++   + R  + G  + V VY LI  +TI+E +++  + K T  D ++N
Sbjct: 82  DWNP-----FVDLQAMDRAHRIGQTKTVNVYRLITTDTIEEKIMKLQQRKQTTSDAVVN 135


>gi|238624120|ref|NP_001121770.2| chromodomain helicase DNA binding protein 1 [Danio rerio]
          Length = 1693

 Score = 93.3 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N           +  +       
Sbjct: 710 KQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNRQEGLQH 769

Query: 53  ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +     + L +          
Sbjct: 770 LVRSSGKLILLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEM 829

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 830 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 883

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 884 RAHRIGQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRM 927


>gi|299753600|ref|XP_002911886.1| Mot1 [Coprinopsis cinerea okayama7#130]
 gi|298410374|gb|EFI28392.1| Mot1 [Coprinopsis cinerea okayama7#130]
          Length = 1929

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 64/240 (26%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------------HDEKIKA 58
            ++  +    +         +L N       ++   +V                +  K+ A
Sbjct: 1624 VEKGDPAQQHVFQSLQYLRKLCNHPALVLRDEEATKVALENAKLTKDSLRDIQNAPKLLA 1683

Query: 59   LEVIIEKA----------------------------NAAPIIVAYHFNSDLAR------- 83
            L+ ++                               +   +++       L         
Sbjct: 1684 LKQLLMDCGIGSPPALAADSQKSELIDAPTDTSGTFSQHRVLIFCQMKQMLDIIETDLFK 1743

Query: 84   ------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             +K    +Q +N +  I  L       G GL L  G + ++F  
Sbjct: 1744 PHMPSVTYMRLDGSTDANKRHAIVQTFNSDPSIDCLLLTTHVGGLGLTLT-GADTVIFVE 1802

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G K+ V VY LI + T++E ++   R K  I + ++N
Sbjct: 1803 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITKGTLEEKIMGLQRFKLNIANSIVN 1857


>gi|296232911|ref|XP_002761790.1| PREDICTED: transcription activator BRG1 [Callithrix jacchus]
          Length = 1679

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|149020472|gb|EDL78277.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Rattus
            norvegicus]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73951143|ref|XP_859285.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 10 [Canis familiaris]
          Length = 1806

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|119570423|gb|EAW50038.1| helicase, lymphoid-specific, isoform CRA_m [Homo sapiens]
          Length = 874

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEK---ANAAPIIVAY 75
            +   +  N     +                  +  K   L+ ++ +        +++  
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVVLLFS 623

Query: 76  HFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              S L  L                  +  +    +  +N + ++ +      + G G+N
Sbjct: 624 QMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGIN 683

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R 
Sbjct: 684 LTA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 737

Query: 185 RTKSTIQDLLLN 196
             K  ++ L+++
Sbjct: 738 AAKRKLEKLIIH 749


>gi|114658991|ref|XP_001170635.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 2
           [Pan troglodytes]
 gi|114658993|ref|XP_001170689.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 5
           [Pan troglodytes]
          Length = 1730

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 628 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 687

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 688 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 747

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 748 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 801

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 802 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 845


>gi|192807323|ref|NP_001122321.1| transcription activator BRG1 isoform A [Homo sapiens]
 gi|10946129|gb|AAG24790.1|AF254822_2 SMARCA4 isoform 2 [Homo sapiens]
 gi|119604570|gb|EAW84164.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_c [Homo
            sapiens]
          Length = 1679

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|296814674|ref|XP_002847674.1| RING-13 protein [Arthroderma otae CBS 113480]
 gi|238840699|gb|EEQ30361.1| RING-13 protein [Arthroderma otae CBS 113480]
          Length = 1176

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 33/201 (16%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---EKAN 67
               +L+ E     N  +K      L             +     K+     I+     + 
Sbjct: 968  SLAELKKE--AQRNVKAKRKYLRTL-----------DKRWEPSAKVDKTIEILESLHNSG 1014

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHP 116
                I+   F S L  ++    +     +               +   +     ++    
Sbjct: 1015 DEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRNDSVLDFTDNPDCRIMLVSL 1074

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLNL    + ++    +W+       IE   + R  + G  R V V+ L+ +NT+
Sbjct: 1075 KAGNAGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHRIGQMRPVMVHRLLVENTV 1128

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            ++ ++     K  + +  L+ 
Sbjct: 1129 EDRIIALQDKKRELIEGALDE 1149


>gi|225682812|gb|EEH21096.1| chromodomain helicase hrp1 [Paracoccidioides brasiliensis Pb03]
          Length = 1521

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 37/236 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 707 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 766

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 767 MRAIITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 826

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 827 AGPRRLSIEHFNAPDSNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 880

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIHV 205
            + R  + G  + V VY L++++T++E VL+R R K  ++ + +      KE I +
Sbjct: 881 AMARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLLEFITIQRGVTDKEAIEL 936


>gi|327281454|ref|XP_003225463.1| PREDICTED: lymphoid-specific helicase-like [Anolis carolinensis]
          Length = 811

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 62/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYD---EEKHWKEV-------HDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +   E    +            K   L+ ++ +       +++   
Sbjct: 538 MMLLRKCCNHPYLIEYPLEPGTQQFKVDEDLVNSSGKFLLLDRMLPELKKRGHKVLLFSQ 597

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               L  L                     ++D    +   + ++ +      + G G+NL
Sbjct: 598 MTQMLDILMDYCYLRNYQFSRLDGSMSYTERDENMSKFNKDQEVFIFLLSTRAGGLGINL 657

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY  +  NTID+ +++   
Sbjct: 658 TA-ADTVIIYDSDWNPQ-----CDLQAQDRCHRIGQTKPVVVYRFVTANTIDQKIVETAA 711

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 712 AKRKLEKLVIH 722


>gi|327263457|ref|XP_003216536.1| PREDICTED: probable global transcription activator SNF2L2-like
            [Anolis carolinensis]
          Length = 1559

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 965  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 1024

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1025 NGVITGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFAYLRL 1084

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1085 DGTTKSEDRAALLKKFNEPNSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1140

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1141 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILSAAKYKLNVDQKVIQA 1189


>gi|301771978|ref|XP_002921403.1| PREDICTED: transcription activator BRG1-like isoform 1 [Ailuropoda
            melanoleuca]
          Length = 1639

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|297703588|ref|XP_002828719.1| PREDICTED: transcription activator BRG1-like isoform 1 [Pongo abelii]
          Length = 1679

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|303279422|ref|XP_003059004.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460164|gb|EEH57459.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1131

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 65/249 (26%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK---------- 49
           + Y  F   +     L G++       +      +L N      +  + +          
Sbjct: 445 QLYQHFLDSKAAKAALTGKSTM---VLAAITALKKLCNHPKLIYDMINAEKNTGSAAAGF 501

Query: 50  -----------------------------EVHDEK---IKALEVIIEKANAAPIIVAYHF 77
                                        E H  K   +  L  I+       I++  ++
Sbjct: 502 ESCGAYFQPGMYDVRGPHGRGKSGMCDGWEFHSGKFAVLARLLAILRAETKDRIVIISNY 561

Query: 78  NSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNL 125
              L                   G ++ K    ++++N+      +      + G G+NL
Sbjct: 562 TQTLDLVQFLCKQNNYPHCRLDGGTSITKRQKLVRQFNDPTENCFVFLLSSKAGGCGINL 621

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             GGN LV F   W+        ++    R  + G K+  ++Y L A  +I+E V QR  
Sbjct: 622 -IGGNRLVLFDPDWNPAN-----DKQAAARCWRDGQKKKCYLYRLFATGSIEEKVFQRQL 675

Query: 186 TKSTIQDLL 194
           +K ++Q+++
Sbjct: 676 SKESLQNVV 684


>gi|225850307|ref|YP_002730541.1| helicase, Snf2 family [Persephonella marina EX-H1]
 gi|225646235|gb|ACO04421.1| helicase, Snf2 family [Persephonella marina EX-H1]
          Length = 562

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
                +   +   + I   N      K  Q+ N           K     K+  L  II 
Sbjct: 341 EDIIDKYRDEKNFKFILKQNIIHSIQKLRQVCNFPS--------KGFDSPKMARLREIII 392

Query: 65  K--ANAAPIIVAYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           +   N   +IV  +F                       +  G   ++    ++++ E K 
Sbjct: 393 ELIKNDEKVIVFTNFVKYGIERIVNNLSYYINPDYIVQYHGGMRPEEKIKAVKDFKEKKN 452

Query: 110 P-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      S G GL L    +  +FF L W+  +  Q  +RI      + G K  + +Y
Sbjct: 453 KYVFIGTITSAGEGLTLTE-SSYAIFFDLHWNPAKIWQAEDRI-----HRIGQKNKINIY 506

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + +NT++E +LQ+L  K  +   +++ ++K
Sbjct: 507 NFVMRNTVEERILQKLEEKRAMIQNVIDGIEK 538


>gi|84997840|ref|XP_953641.1| DEAD-box family helicase [Theileria annulata]
 gi|65304638|emb|CAI72963.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 1724

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK---------DPCTIQEW 104
            K+    ++  K+     I+   F+  L  L+      G T  +             I  +
Sbjct: 1409 KVLGPLLLKLKSEDHRCIIYTQFSKMLDILENWINFMGFTYIRLDGSTKIDMRQKIINRF 1468

Query: 105  N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N   KI L  +   + G G+ L  G + ++F+   W+       I+R  + R  + G  +
Sbjct: 1469 NENTKIFLFISSTRTGGVGITLT-GADTVIFYDTDWNPA-----IDRQAMDRCHRIGQTK 1522

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             V VY LI ++T++E + ++   K  + DL+++  + +  H
Sbjct: 1523 DVNVYRLITEHTVEENIWRKQLQKRKLDDLIVDQGQFDVQH 1563


>gi|297814462|ref|XP_002875114.1| CHR19/ETL1 [Arabidopsis lyrata subsp. lyrata]
 gi|297320952|gb|EFH51373.1| CHR19/ETL1 [Arabidopsis lyrata subsp. lyrata]
          Length = 764

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K + L  ++   K +   +++   + S L  L+          +              
Sbjct: 588 SAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTI 647

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N  K I        + G GLNL  G + ++   + ++ +     I+R    R  + 
Sbjct: 648 VDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQ-----IDRQAEDRCHRI 701

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 702 GQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 739


>gi|291233872|ref|XP_002736874.1| PREDICTED: DNA repair and recombination protein RAD54-like
           [Saccoglossus kowalevskii]
          Length = 678

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 42/211 (19%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEE---------------------KHWKEVHDEKIKALE 60
           + +S S   +  +L N       +                     K  +     K++ L+
Sbjct: 378 SMSSLSSITQLKKLCNHPSLIYNKCVDGEEGFDGALDLFPSNFNAKGVQPELSGKMQVLD 437

Query: 61  VII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
            I+      ++  +++  ++   L   +K                ++ K    ++ +N  
Sbjct: 438 YILAVTRTTSSDKVVLVSNYTQTLDLFEKLCHNRGYLYVRLDGSMSIKKRAKMVERFNNP 497

Query: 108 KI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G N LV F   W+        +   + R  + G K+  
Sbjct: 498 SSAEYIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DDQAMARVWRDGQKKQC 551

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L++  TI+E + QR   K  +   +++
Sbjct: 552 YIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 582


>gi|242059437|ref|XP_002458864.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
 gi|241930839|gb|EES03984.1| hypothetical protein SORBIDRAFT_03g041720 [Sorghum bicolor]
          Length = 1207

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 86/227 (37%), Gaps = 33/227 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVHDEKI-- 56
            + Y     + Y  L G  I++    +     ++  +  N    +      ++  D+ +  
Sbjct: 784  ELYINILEKNYSKLNGA-IKSGKKLALNNILMQLRKCCNHPYLFQGLNTEQQPEDDFLSL 842

Query: 57   ---------KALEVIIEKANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK---------D 97
                         +   K     +++       L  L+   F  G    +          
Sbjct: 843  VAVSGKLQLLQKLLPRLKERGNRVLIFSQMTMMLDILEGFLFYMGFKYARIDGQTSLSAR 902

Query: 98   PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+E+N  E +I +      + G G++L  G + ++ +   ++       ++     R
Sbjct: 903  QESIKEYNRAESEIFIFLMSTRAGGLGVDL-PGADRVIIYDPDFNP-----FMDLQAQAR 956

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G  R V VY LI + +++E +LQ+ + K  ++++L+N+  K+ 
Sbjct: 957  AHRIGQTRPVVVYQLITKCSVEEKILQKSKKKLAVENMLMNSSNKKP 1003


>gi|148693261|gb|EDL25208.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Mus
            musculus]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73986640|ref|XP_867859.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 23
            [Canis familiaris]
 gi|73986642|ref|XP_533915.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 1
            [Canis familiaris]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|21071056|ref|NP_003063.2| transcription activator BRG1 isoform B [Homo sapiens]
 gi|192807312|ref|NP_001122316.1| transcription activator BRG1 isoform B [Homo sapiens]
 gi|116242792|sp|P51532|SMCA4_HUMAN RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Mitotic growth and transcription activator; AltName:
            Full=Protein BRG-1; AltName: Full=Protein brahma homolog
            1; AltName: Full=SNF2-beta; AltName: Full=SWI/SNF-related
            matrix-associated actin-dependent regulator of chromatin
            subfamily A member 4
 gi|10946128|gb|AAG24789.1|AF254822_1 SMARCA4 isoform 1 [Homo sapiens]
 gi|119604568|gb|EAW84162.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_a [Homo
            sapiens]
 gi|152013071|gb|AAI50299.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Homo sapiens]
 gi|158261089|dbj|BAF82722.1| unnamed protein product [Homo sapiens]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|154271652|ref|XP_001536679.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
 gi|150409349|gb|EDN04799.1| hypothetical protein HCAG_08461 [Ajellomyces capsulatus NAm1]
          Length = 889

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIKALEVIIEK--ANAA 69
           IE   +A    +     N    +         H          K+  L+ +I    +   
Sbjct: 602 IEKAKTAQLATRL--ACNSPHNFYWPWGDDPSHIDDTLITSSGKMLLLDRLIPCLMSKGH 659

Query: 70  PIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117
            I++   F            S             +       IQ +N +    + F    
Sbjct: 660 KILIFSQFKTQLDLLQDYATSLRGWNCCRIDGAVSQVDRQAQIQAFNTDPDYRIFFLSTR 719

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    + ++ F   W+ ++     +     R  + G  + V VY L  + T++
Sbjct: 720 AGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPVIVYRLATRGTVE 773

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           + +L++  +K  ++ L++   K +++
Sbjct: 774 QTLLEKADSKRRLEKLVIQKGKFKSL 799


>gi|73986610|ref|XP_867743.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 9
            [Canis familiaris]
          Length = 1601

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 29/218 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEV---HD 53
             Y   Q +      G   +           +  ++  ++ N           +       
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMDVGGMEKQLDLYRAS 1066

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
             K + L+ I+ K  A    +++     S +  ++  F                +     +
Sbjct: 1067 GKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLL 1126

Query: 102  QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            + +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  + 
Sbjct: 1127 KTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRI 1180

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1181 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1218


>gi|73951129|ref|XP_859020.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 4 [Canis familiaris]
          Length = 1714

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 613 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 672

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 673 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 732

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 733 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 786

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 787 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 830


>gi|296083825|emb|CBI24213.3| unnamed protein product [Vitis vinifera]
          Length = 1539

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 2   KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y       + DL         +  +  V+  +  N    ++   H             
Sbjct: 669 QYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGNRSTNDCGK 728

Query: 51  -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                +   K+  L+ ++EK +     +++       L  L +         +       
Sbjct: 729 LERLILSSGKLVLLDKLLEKLHETNHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTK 788

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 789 AELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 842

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 843 AMSRAHRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDHLVIQKLNAEG 893


>gi|50557268|ref|XP_506042.1| YALI0F30261p [Yarrowia lipolytica]
 gi|49651912|emb|CAG78855.1| YALI0F30261p [Yarrowia lipolytica]
          Length = 1353

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 63/178 (35%), Gaps = 22/178 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLAR-----------LQKAF 88
            EE+  K     K      ++E    +      I+   F S +               +  
Sbjct: 1154 EEEDEKLPPSAKALRCVELLEKIKEENPGEKTIIFSQFVSFMNLIGDELDNAGFEYLRYE 1213

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  ++         +  I +L     +   GL L    N ++    +W+       +
Sbjct: 1214 GSMHADERSRAVTAFREDPSISVLLISLKAGNVGLTLTA-ANHVIIMDPFWNP-----YV 1267

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
            E   + R  + G +R V V+ ++ + T+++ +L+  + K  + +  L+ + +++   +
Sbjct: 1268 EEQAMDRAHRIGQQRDVTVHKIVIEQTVEDRILELQKRKREMIESALDPSGQRQMARL 1325


>gi|322705041|gb|EFY96630.1| helicase SWR1 [Metarhizium anisopliae ARSEF 23]
          Length = 1731

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
                  +K   +    K++ L+ ++ K        ++       L  L++          
Sbjct: 1395 HSIQFPDKRLLQYDCGKLQVLDKLLRKLQAGGHRALIFTQMTKVLDILEQFLNIHGHKYL 1454

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +       +N + +I        S G G+NL  G + ++F+   W+     
Sbjct: 1455 RLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPA--- 1510

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++   +
Sbjct: 1511 --MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGE 1562


>gi|255552319|ref|XP_002517204.1| ATP binding protein, putative [Ricinus communis]
 gi|223543839|gb|EEF45367.1| ATP binding protein, putative [Ricinus communis]
          Length = 1079

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKA 58
           Y +        LQ  + ++ +  + +++  +  N    +        +        K + 
Sbjct: 578 YQQVTEIGRVGLQTGSGKSKSLQNLSMQLRKCCNHPYLFVGDYNMWRREEIIRAAGKFEL 637

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNE 106
           L+ ++ K  A    +++       +  L+                   ++    ++++N 
Sbjct: 638 LDRLLPKLRATGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGTLLKQFNA 697

Query: 107 GKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+ 
Sbjct: 698 PDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQKKE 751

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 752 VRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 784


>gi|189191218|ref|XP_001931948.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973554|gb|EDU41053.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1242

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 52   HDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPC 99
               KI+ L  I+ ++  +  +IV   F S L  ++    +                ++  
Sbjct: 1012 PSTKIRQLLAILSQETPSHKVIVFSQFTSMLDLIEPFLRRAHYTYTRYDGSMRNDHREAS 1071

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +  ++ K  +L         GLNL    + +V    +W+       +E   + R  + 
Sbjct: 1072 LHKLRSDPKTRVLLCSLKCGSLGLNLTA-ASRVVIMEPFWNP-----FVEEQAIDRVHRL 1125

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 V VY L  +++++E +L+    K  + +  +   K 
Sbjct: 1126 NQTVDVTVYRLSIRDSVEERILELQEAKRKLANAAIEGGKA 1166



 Score = 38.2 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 4/43 (9%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           Y + Q      L     GE  +   +    ++  Q  N     
Sbjct: 677 YTRLQDRTQARLDEMMGGEKQDYIGALVLLLRLRQACNHPDLV 719


>gi|310793352|gb|EFQ28813.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1599

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           ++ Y       Y  L     +  +  +  ++  +++N    +   +              
Sbjct: 695 LEYYKNILTRNYAALSNATGQKNSLLNIMMELKKVSNHPYMFPGAEDRVLAGSTRREDQI 754

Query: 52  -----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   ++V       L  L           +        
Sbjct: 755 KGLIASSGKMMLLDQLLTKLKKDGHRVLVFSQMVKMLDILSDYMALRGYKFQRLDGTIAA 814

Query: 98  ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I  +N              + G G+NL    + +V F   W+ +      +   
Sbjct: 815 GPRRMAINHFNAEDSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQA 868

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G K+ V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 869 MGRAHRIGQKKPVSIYRLVSKETVEEEVLERARNKLLLEYLTIQA 913


>gi|302755712|ref|XP_002961280.1| hypothetical protein SELMODRAFT_403041 [Selaginella moellendorffii]
 gi|300172219|gb|EFJ38819.1| hypothetical protein SELMODRAFT_403041 [Selaginella moellendorffii]
          Length = 3598

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--VHD----- 53
             Y +   +   +  G    A   +  +  ++   + N            E  +       
Sbjct: 1389 AYQRLLMKRVKEKMGGIGHAKVRSVQNTVMELRNICNHPYLSHVHTEEAESLLPSHYLPT 1448

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K   +   +++       L  L+                    +
Sbjct: 1449 VIRLCGKLEMLDRILPKLKKSNHRVLLFSTMTRLLNVLEDYLTWKGYKYLRLDGHTMGSE 1508

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N       L      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1509 RGSLIDRFNAPDSDAFLFLLSIRAGGIGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1562

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G KR V V  L   NTI+E V      K  + +  + A
Sbjct: 1563 RAHRIGQKRDVLVLRLETVNTIEEQVRASAEHKLGVANQSITA 1605


>gi|302803051|ref|XP_002983279.1| hypothetical protein SELMODRAFT_422676 [Selaginella moellendorffii]
 gi|300148964|gb|EFJ15621.1| hypothetical protein SELMODRAFT_422676 [Selaginella moellendorffii]
          Length = 3497

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKE--VHD----- 53
             Y +   +   +  G    A   +  +  ++   + N            E  +       
Sbjct: 1405 AYQRLLMKRVKEKMGGIGHAKVRSVQNTVMELRNICNHPYLSHVHTEEAESLLPSHYLPT 1464

Query: 54   -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K   +   +++       L  L+                    +
Sbjct: 1465 VIRLCGKLEMLDRILPKLKKSNHRVLLFSTMTRLLNVLEDYLTWKGYKYLRLDGHTMGSE 1524

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N       L      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1525 RGSLIDRFNAPDSDAFLFLLSIRAGGIGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1578

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G KR V V  L   NTI+E V      K  + +  + A
Sbjct: 1579 RAHRIGQKRDVLVLRLETVNTIEEQVRASAEHKLGVANQSITA 1621


>gi|297703590|ref|XP_002828720.1| PREDICTED: transcription activator BRG1-like isoform 2 [Pongo abelii]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|154313972|ref|XP_001556311.1| hypothetical protein BC1G_04929 [Botryotinia fuckeliana B05.10]
 gi|150849075|gb|EDN24268.1| hypothetical protein BC1G_04929 [Botryotinia fuckeliana B05.10]
          Length = 1065

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 53  DEKIKALEVII-EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             KI  L  I+ ++A     IV   F S L                +  G   D    ++
Sbjct: 827 STKITHLMKILGKEAAQHKFIVFSQFTSMLDLVEPFLRQKGYKYTRYDGGMKNDLREASL 886

Query: 102 QE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N+    +L         GLNL      +V    +W+       +E   + R  +  
Sbjct: 887 DRLRNDENCRVLLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVEEQAIDRVHRLT 940

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  V VY +  ++T++E +L     K  + +  + 
Sbjct: 941 QKIDVIVYKITIKDTVEERILLLQEKKRELANQTIE 976



 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           + Y + +R     ++    G  +   ++    ++  Q  N     
Sbjct: 541 RFYERLERRTDASIEEMMGGSKVNYASALVLLLRLRQACNHPKLV 585


>gi|114658987|ref|XP_001170658.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 3
           [Pan troglodytes]
          Length = 1603

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|327198375|ref|YP_004306949.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
 gi|314912677|gb|ADT64068.1| putative ATP-dependent helicase [Streptococcus phage Dp-1]
          Length = 545

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +   +L  ++  +     N  ++T++  Q              ++V   K +    
Sbjct: 335 KIYKEVLTKLVQEI-DKVKLMPNPLAETIRLRQATGNPSIL----TTQDVKSCKFERCIE 389

Query: 62  IIEKA--NAAPIIVAYHFNSDLAR--------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           I+E+        ++  ++   +          ++     G T DK     +  N  K  +
Sbjct: 390 IVEECIQQGKSCVIFSNWEKVIEPLAKILSKTVKCNLVTGETADKFNEIEEFMNHRKASV 449

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G G  L     ++   S W   E+           R  + G K +V +Y L+
Sbjct: 450 ILGTIGALGTGFTLTKADTVIFLDSPWTRAEKD------QAEDRCHRIGAKSSVTIYTLV 503

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA--LKKET 202
           A+ T+DE +   +  K  + D +++   +K + 
Sbjct: 504 AKGTVDERIEDLIERKGELADYIVDGKPMKSKI 536


>gi|209882890|ref|XP_002142880.1| SNF2 family helicase [Cryptosporidium muris RN66]
 gi|209558486|gb|EEA08531.1| SNF2 family helicase, putative [Cryptosporidium muris RN66]
          Length = 1313

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 3   QYHKFQRELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y + +++     D+    I+  + ++  ++  ++ N    + +E   +     K+    
Sbjct: 749 VYGQIKQKAVHSMDISSGKIQYRSVSNTIMQLRKIVNHPYLFVDEYFARNDDIFKVSCKF 808

Query: 61  VIIEKA------NAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQEW 104
            I+++           +++                              + +    +  +
Sbjct: 809 EILDRMIPKLVYFKHKVLIFCQMTQLMDILGDFLDYRDISYYRLDGTMNIQERKEKMDIF 868

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+      +      + G GLNLQ   + ++ F   W+  +     +    +R  + G K
Sbjct: 869 NDPDSNTFVFMLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-----DLQAQSRAHRMGQK 922

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V V+ L++ + ++ELVL+R + K  I   ++ A K
Sbjct: 923 NEVRVFRLVSISGVEELVLKRAQKKLDIDQKIIQAGK 959


>gi|19115202|ref|NP_594290.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe 972h-]
 gi|3123262|sp|P41410|RAD54_SCHPO RecName: Full=DNA repair protein rhp54; AltName: Full=RAD54 homolog
           1
 gi|2239180|emb|CAB10100.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe]
          Length = 852

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 44/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------------------DEKIK 57
                        ++ N     +  +  +                            K+ 
Sbjct: 554 TGSQPLKAIGLLKKICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKML 613

Query: 58  ALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            LE ++ +        I++  ++ S L   ++                 ++K    +  +
Sbjct: 614 VLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTF 673

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+ +    +      + G G+NL  G N L+ F   W+    Q       + R  + G K
Sbjct: 674 NDPEKDAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ-----QALARVWRDGQK 727

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  FVY  IA  TI+E + QR   K ++   +++ 
Sbjct: 728 KDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDE 762


>gi|224009183|ref|XP_002293550.1| hypothetical protein THAPSDRAFT_263996 [Thalassiosira pseudonana
           CCMP1335]
 gi|220970950|gb|EED89286.1| hypothetical protein THAPSDRAFT_263996 [Thalassiosira pseudonana
           CCMP1335]
          Length = 1000

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 19/206 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y  F      +    +I+A  +  K +  LQ+        ++        + +  +E 
Sbjct: 607 KWYKSFVDR--AEKSEMDIKAIENGGKIIVLLQIIAHCDSIGDKVVVFSQCLKTLSYVEE 664

Query: 62  IIEKANA---APIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNEGKI---P 110
           I++  N     P +  Y+    L   +K              +    +  +N   I    
Sbjct: 665 ILQSPNWGGFQPFLPDYNGKQRLGGWEKGKEYLRIDGSVDARERGDLVDTFNTEAIAHSK 724

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    N +V     W+       I    V R  + G  +  F Y L
Sbjct: 725 VFLLSTQAGGLGINLVA-ANRVVLLDSHWNPA-----ISDQAVHRCYRFGQTKPTFCYRL 778

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +A+ +++E +  R   KS++ DL+++
Sbjct: 779 LAEGSMEEKIYSRAAAKSSLSDLVID 804


>gi|73986638|ref|XP_867851.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 22
            [Canis familiaris]
          Length = 1643

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|32425420|gb|AAH15477.1| HELLS protein [Homo sapiens]
          Length = 317

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 43  MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 102

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 103 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 162

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 163 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 216

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 217 AKRKLEKLIIH 227


>gi|452690|emb|CAA82750.1| DNA repair protein [Schizosaccharomyces pombe]
          Length = 852

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 44/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------------------DEKIK 57
                        ++ N     +  +  +                            K+ 
Sbjct: 554 TGSQPLKAIGLLKKICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKML 613

Query: 58  ALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            LE ++ +        I++  ++ S L   ++                 ++K    +  +
Sbjct: 614 VLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTF 673

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+ +    +      + G G+NL  G N L+ F   W+    Q       + R  + G K
Sbjct: 674 NDPEKDAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ-----QALARVWRDGQK 727

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  FVY  IA  TI+E + QR   K ++   +++ 
Sbjct: 728 KDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDE 762


>gi|326923770|ref|XP_003208107.1| PREDICTED: TATA-binding protein-associated factor 172-like [Meleagris
            gallopavo]
          Length = 2308

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 77/258 (29%), Gaps = 68/258 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF---------------NSASKTVKCLQLANGAVYYDEE 45
            ++ Y  F +        E + +                +         +L N        
Sbjct: 1987 VQLYEDFAKSRAKCDIDETVSSISLREETEKPKLKATGHVFQALQYLRKLCNHPALVLTT 2046

Query: 46   KHWKEV-----------------HDEKIKALEVIIEKAN----------------AAPII 72
            +H +                   H  K+ AL+ ++                       I+
Sbjct: 2047 QHPEYKRITEQLAAHNSSLRDIQHAPKLSALKQLLLDCGLGNGGSSESGTEAVVAQHRIL 2106

Query: 73   VAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            +     S L  ++                       +    + ++N +  I +L      
Sbjct: 2107 IFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSQFNNDPSIDVLLLTTHV 2166

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T++E
Sbjct: 2167 GGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 2220

Query: 179  LVLQRLRTKSTIQDLLLN 196
             ++   + K  I + +++
Sbjct: 2221 KIMGLQKFKMNIANTVIS 2238


>gi|297829816|ref|XP_002882790.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297328630|gb|EFH59049.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2057

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 11/167 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +     +    +   K      +I       + V   F +           
Sbjct: 1071 RLIQFDCGKLQ----ELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDG 1126

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1127 STPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1180

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +    R  + G  R V +Y LI+++TI+E +L++   K  + +L++ 
Sbjct: 1181 QQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1227


>gi|109090020|ref|XP_001094924.1| PREDICTED: lymphoid-specific helicase isoform 6 [Macaca mulatta]
          Length = 821

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 547 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 606

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 607 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNMDPEVFIFLVSTRAGGLGINL 666

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 667 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 720

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 721 AKRKLEKLIIH 731


>gi|307206264|gb|EFN84329.1| Helicase domino [Harpegnathos saltator]
          Length = 4084

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +   +    K   D        +I       + V   F +    +      
Sbjct: 1695 RLIQYDCGKLQSLDRLLRKLKSDNHRV----LIFTQMTRMLDVLEAFLNFHGHIYLRLDG 1750

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +D+    ++ +N + +I        S G G+NL  G + ++F+   W+       ++
Sbjct: 1751 TTRVDQRQVLMERFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPT-----MD 1804

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 R  + G  R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1805 AQAQDRCHRIGQTRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1852


>gi|170031684|ref|XP_001843714.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
 gi|167870885|gb|EDS34268.1| chromodomain helicase DNA binding protein [Culex quinquefasciatus]
          Length = 2039

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 70/222 (31%), Gaps = 38/222 (17%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
            K +   ++       G         +  ++  +  N A+     +   +           
Sbjct: 857  KNFDALRK-------GMKGSINTFLNIVIELKKCCNHALLTRPTEFETQTNQDEVVVQLL 909

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                K+  L+ ++   K     +++       L  L +   +     +            
Sbjct: 910  KGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELRK 969

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 970  QALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 1023

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 1024 HRIGQKNQVNIYRLVTAKSVEEDIVERAKKKMVLDHLVIQRM 1065


>gi|164688165|ref|ZP_02212193.1| hypothetical protein CLOBAR_01810 [Clostridium bartlettii DSM
           16795]
 gi|164602578|gb|EDQ96043.1| hypothetical protein CLOBAR_01810 [Clostridium bartlettii DSM
           16795]
          Length = 700

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 20/206 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+ F   L   +   N +     S   K   L+       +        + K++ L  
Sbjct: 479 KVYNTFLSILKKQIIENNSDNVTLFSYLTKLRMLSISPELVVKNYK---GKNSKLEMLIK 535

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIP 110
           II+ +    I+V   F   L  + K F +               K    ++++N      
Sbjct: 536 IIKSSKDRKILVFSQFTQVLGLIAKRFEKENIEFNYLDGKIDAKKRLELVEDFNQNKSKK 595

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G GLNL    +++V F  W++       +E     R  + G K  V V  L
Sbjct: 596 VFLISLKAGGTGLNLTS-ASMVVHFDPWFNPA-----VEDQASDRAHRIGQKNIVDVIKL 649

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           I+++T++E V      K  + D ++N
Sbjct: 650 ISKDTVEEKVEAIKEYKKELADDIIN 675


>gi|159111807|ref|XP_001706134.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
 gi|157434227|gb|EDO78460.1| Transcriptional activator, putative [Giardia lamblia ATCC 50803]
          Length = 1859

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 19/164 (11%)

Query: 51   VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K+ AL+ ++        P+++       L  L+               G  ++K  
Sbjct: 1663 KDSGKLTALDKLLHNLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRG 1722

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ +  +  I +      +   GLNL    + ++F+   W+  +     +   + R  
Sbjct: 1723 QIVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQ-----DAQAMDRVH 1776

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1777 RLGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1820


>gi|281347253|gb|EFB22837.1| hypothetical protein PANDA_019651 [Ailuropoda melanoleuca]
          Length = 810

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVY------------------ 41
           ++ Y K    +         +             +L N                      
Sbjct: 456 IELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIKEKEYSSTWDGNE 515

Query: 42  --------------YDEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLAR 83
                               + E    K++ L  ++   +       +++  ++   L  
Sbjct: 516 ERSLYEGLVDVFPADYNPLMFMEEESGKLQVLMKLLAVIHELRPTEKVVLVSNYTQTLNI 575

Query: 84  -LQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
             +     G T  +             +  +N       +      + G GLNL  GG+ 
Sbjct: 576 LQEVCKRHGYTYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 634

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 635 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLS 689

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 690 GAVVDLTK 697


>gi|195354288|ref|XP_002043630.1| GM15785 [Drosophila sechellia]
 gi|194127798|gb|EDW49841.1| GM15785 [Drosophila sechellia]
          Length = 1921

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 68/226 (30%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Q++ Y  +  +N EA NS          +  +   +  N    +             +
Sbjct: 921  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGL 980

Query: 57   KAL---------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
              +                +   KA    +++       L  L+      +   +     
Sbjct: 981  YEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1040

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1041 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1094

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1095 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1140


>gi|73951141|ref|XP_859244.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 9 [Canis familiaris]
          Length = 1807

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|302794214|ref|XP_002978871.1| hypothetical protein SELMODRAFT_109740 [Selaginella moellendorffii]
 gi|300153189|gb|EFJ19828.1| hypothetical protein SELMODRAFT_109740 [Selaginella moellendorffii]
          Length = 587

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 72/255 (28%), Gaps = 70/255 (27%)

Query: 2   KQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYY------------- 42
           + Y     E    +          +  FN  S  ++  Q+ N                  
Sbjct: 310 ELYEDLMEEYEARISEYSSEGTLQMNKFNMLSMLLRLRQMCNHPALLDSDHLFQVEDDDL 369

Query: 43  ---------------------------------DEEKHWKEVHDEKIKALEVII-EKANA 68
                                             + K  +     K+KA   ++    + 
Sbjct: 370 IMDEDGSEDGSGHQQMREALSKLQLEAQERQEEFDRKVQEIGQSAKLKAAMRVLDMTPHG 429

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              ++   + S L  ++                 +  K    I+ +  + ++ ++     
Sbjct: 430 EKSLIFSQWTSMLDLIEPELEEAGIQFSRIDGSMSTRKRVEAIKRFSEDPEVAVMLISLR 489

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL      ++   +WW+        E   + R  + G  R V V   + + T++
Sbjct: 490 AGGCGLNLVA-ATRVLLMDMWWNPTT-----EDQAIDRTHRIGQTRPVHVTRFVVKQTVE 543

Query: 178 ELVLQRLRTKSTIQD 192
           E +LQ    K  + +
Sbjct: 544 ERILQIQEEKKKLVE 558


>gi|123416804|ref|XP_001304972.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121886460|gb|EAX92042.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1107

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 30  VKCLQLANGAVYYDEE---KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARL 84
           ++  +  N    + +             K + L+ I+ K       I++       L  L
Sbjct: 670 MQLRKCCNHPYLFYDTWFVNLDLVRTSGKCEVLDRILPKLKATGHRILIFSQMTEVLTLL 729

Query: 85  QKAFPQ----------GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNIL 132
           Q                   D+    I ++N  + +  +      + G GLNLQ   + +
Sbjct: 730 QDLLTWRDYKYLRLDGNTKSDQRQQLIADFNKEDSEYFIFLLSTRAGGLGLNLQT-ADTV 788

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + +   W+        ++   +R  + G ++ V V  L+   +I+E V++R   K T+++
Sbjct: 789 ILYDNDWNP-----FADQQARSRVHRIGQEKPVLVISLVTAGSIEERVVERADDKKTVEN 843

Query: 193 LLLNALK 199
            ++   +
Sbjct: 844 KIIEIGR 850


>gi|15226870|ref|NP_178318.1| ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|4038042|gb|AAC97224.1| putative helicase [Arabidopsis thaliana]
 gi|16648975|gb|AAL24339.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana]
 gi|27311941|gb|AAO00936.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana]
 gi|330250451|gb|AEC05545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K + L  ++   K +   +++   + S L  L+          +              
Sbjct: 587 SAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTI 646

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +N  K I        + G GLNL  G + ++   + ++ +     I+R    R  + 
Sbjct: 647 VDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIHDMDFNPQ-----IDRQAEDRCHRI 700

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  + V ++ L+ ++T+DE + +  + K  +   +L +
Sbjct: 701 GQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 738


>gi|311253615|ref|XP_003125618.1| PREDICTED: DNA repair and recombination protein RAD54B-like,
           partial [Sus scrofa]
          Length = 838

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           ++ Y K    +         +E  +         +L N           KE         
Sbjct: 557 IELYRKLLNSQAVRFCLQGLMENSSHLICIGALKKLCNHPCLLFSSVKEKECSSAWDENE 616

Query: 55  -KIKALEVIIEKANAAPIIVA------------------------------YHFNSDLAR 83
            +    +++         ++                                ++   L  
Sbjct: 617 ERRLYEDLLKVFPPDYNPLMFAEEESGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNI 676

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           LQ+   +             + +    +  +N       +      + G GLNL  GG+ 
Sbjct: 677 LQEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 735

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 736 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLS 790

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 791 GAVVDLTK 798


>gi|296485891|gb|DAA28006.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a4 [Bos taurus]
          Length = 1605

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 999  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1058

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1059 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1118

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1119 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1174

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1175 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223


>gi|238881028|gb|EEQ44666.1| chromatin remodelling complex ATPase chain ISW1 [Candida albicans
           WO-1]
          Length = 1056

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q E Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 445

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                 + 
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 505

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 506 EDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 559

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V V+  + +  I+E VL+R   K  +  L++   ++
Sbjct: 560 MDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQ 607


>gi|194036393|ref|XP_001929392.1| PREDICTED: transcription termination factor 2-like [Sus scrofa]
          Length = 1166

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 67/238 (28%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------------------------- 53
               +  S+ ++  Q               E+                             
Sbjct: 916  STVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLVLSLEEQLSALTLSELHSSESSAS 975

Query: 54   -----------------------EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
                                     +  LE I   + +   ++   + S L  +     +
Sbjct: 976  VSLNGTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKR 1035

Query: 91   GRTLD----------KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             R             +    ++ +N  G   ++     + G GLNL  GGN L    + W
Sbjct: 1036 HRVTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHW 1094

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +        E     R  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1095 NPSL-----EDQASDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQILSG 1147


>gi|157785561|ref|NP_001099084.1| transcription activator BRG1 [Bos taurus]
 gi|288559138|sp|A7Z019|SMCA4_BOVIN RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|157278973|gb|AAI53217.1| SMARCA4 protein [Bos taurus]
          Length = 1606

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 999  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1058

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1059 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1118

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1119 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1174

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1175 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1223


>gi|149755450|ref|XP_001490674.1| PREDICTED: similar to Probable global transcription activator SNF2L4
            (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related
            matrix-associated actin-dependent regula isoform 1 [Equus
            caballus]
          Length = 1647

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A +  +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATSHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|50414862|gb|AAH77794.1| HELLS protein [Xenopus laevis]
          Length = 756

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +        +            K   L+ ++ +       +++   
Sbjct: 567 MMLLRKCCNHPYLIEYPLDPLTQNFKIDEELVNSSGKFLLLDRLLPEMKKRGHKVLIFSQ 626

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +       ++ +N +  + +      + G G+NL
Sbjct: 627 MTMMLDILMDYCYYKKFNFCRLDGSMSYTDREENMRSFNTDPDVFIFLVSTRAGGLGINL 686

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  R V VY L+  NTID+ +++R  
Sbjct: 687 TA-ADTVIIYDSDWNPQA-----DLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAA 740

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 741 AKRKLEKLVIH 751


>gi|328718561|ref|XP_003246514.1| PREDICTED: putative DNA helicase Ino80-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1314

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 29/179 (16%)

Query: 27   SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
            S   K  Q           ++ + +   ++  +  I+E+      +          R  +
Sbjct: 1021 SLLTKLKQ-----------ENHRVLIYSQMTRMIDILEEYMWYKKL----------RYMR 1059

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++        N   I +      + G G+NL    + ++F+   W+      
Sbjct: 1060 LDGSSKISERRDMVADFQNRSDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT---- 1114

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETI 203
             +++  + R  + G  + V VY LI QN+I+E +LQR + KS IQ ++++   LK +T+
Sbjct: 1115 -VDQQAMDRAHRLGQTKQVTVYRLITQNSIEERILQRAKEKSEIQRMVISGGNLKPDTL 1172


>gi|253745191|gb|EET01274.1| Transcriptional activator, putative [Giardia intestinalis ATCC 50581]
          Length = 1837

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 19/164 (11%)

Query: 51   VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K+ AL+ ++        P+++       L  L+               G  ++K  
Sbjct: 1641 KDSGKLIALDKLLHNLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRG 1700

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ +  +  I +      +   GLNL    + ++F+   W+  +     +   + R  
Sbjct: 1701 QIVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQ-----DAQAMDRVH 1754

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1755 RLGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1798


>gi|164660806|ref|XP_001731526.1| hypothetical protein MGL_1709 [Malassezia globosa CBS 7966]
 gi|159105426|gb|EDP44312.1| hypothetical protein MGL_1709 [Malassezia globosa CBS 7966]
          Length = 872

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------- 95
              + ++  KI+ L  II++       +++   F S L  L                   
Sbjct: 681 PESEWMNSGKIQQLRKIIDEVVERRDRMLIFSQFTSVLDILCVCLEHMGVKYVGFTGQTN 740

Query: 96  --KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  + ++  +  IP+      + G G+NL    N +V F   ++ +      ++  
Sbjct: 741 VGDRQVLVDKFTSDPTIPVFLLSTRAGGLGINLVA-ANWVVLFDQDFNPQN-----DKQA 794

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  + V V  LI++ TIDE +L     K  + D +
Sbjct: 795 TDRCYRIGQTKPVTVVRLISRGTIDEDILALAHRKLELADRV 836


>gi|148709693|gb|EDL41639.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 2, isoform CRA_b [Mus
           musculus]
          Length = 1235

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 656 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 715

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 716 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 775

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 776 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 831

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 832 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 880


>gi|37542688|gb|AAL47203.1| chromatin-remodeling factor CHD3 [Oryza sativa Indica Group]
          Length = 1111

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 29/222 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------VH 52
           + Y     + Y  L   +    +  +  ++  +L   A   DE +               
Sbjct: 547 EYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMTDEPEEPANSEEALRRLLES 606

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
             K++ L+ ++ K       +++   F   L              +         +    
Sbjct: 607 SGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLSYRKWSYERIDGKIGGAERQIR 666

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +N              + G G+NL    + ++ +   W+        +   + R  +
Sbjct: 667 IDRFNAKNSTRFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HADLQAMARAHR 720

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G    V +Y L+++ TI+E ++Q  + K  ++ L++  L K
Sbjct: 721 LGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEHLVVGRLTK 762


>gi|728695|emb|CAA88537.1| DNA helicase type protein [Saccharomyces cerevisiae]
          Length = 674

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K++ L+ ++ K  +    +++ +     +  +++     +              +   
Sbjct: 483 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 542

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                   +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 543 VHDWQTNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 596

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  R V VY L+ + TI+E +  R + K  +Q +++    +E
Sbjct: 597 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQE 638


>gi|189189128|ref|XP_001930903.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972509|gb|EDU40008.1| chromo domain-containing protein 1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1570

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           ++ Y       Y  L    +    +  +  ++  + +N A+ +   ++            
Sbjct: 685 LEYYKNILTRNYEALNEGGVGHKQSLLNIVMELKKASNHALLFPNAENKLVKPGSSKEET 744

Query: 53  -------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K  A+   +++       L  L           +       
Sbjct: 745 LKALITSSGKMMLLDRLLGKLKADGHRVLIFSQMVHMLDILTDYLKLRNYSFQRLDGTVP 804

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 805 AADRKIAIDHFNAPGSEDYCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQ 858

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 859 AMARAHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 897


>gi|156046805|ref|XP_001589764.1| hypothetical protein SS1G_09486 [Sclerotinia sclerotiorum 1980]
 gi|154693881|gb|EDN93619.1| hypothetical protein SS1G_09486 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1054

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 53  DEKIKALEVII-EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             KI  L  I+ ++A     IV   F S L                +  G   D    ++
Sbjct: 816 STKITHLMKILGKEAAQHKFIVFSQFTSMLDLVEPFLRQKGFKYTRYDGGMKNDLREASL 875

Query: 102 QE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N+    +L         GLNL      +V    +W+       +E   + R  +  
Sbjct: 876 DRLRNDENCRVLLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVEEQAIDRVHRLT 929

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K  V VY +  ++T++E +L     K  + +  + 
Sbjct: 930 QKIDVVVYKITIKDTVEERILLLQEKKRELANQTIE 965



 Score = 41.7 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 4/45 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           K Y + +      ++    G  +   ++    ++  Q  N     
Sbjct: 540 KFYERLEARTDASIEEMMGGSKVNYASALVLLLRLRQACNHPKLV 584


>gi|145350886|ref|XP_001419826.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580058|gb|ABO98119.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 821

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 23/208 (11%)

Query: 3   QY-HKFQRELYCDLQG-----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y  + +++    + G     ++ E+ +         +L N A    E         +  
Sbjct: 519 LYVDQLKQKSMLSMLGRIGKTQDAESISPLQAIQTLQKLCNAAALATEVSDPVASSSKLA 578

Query: 57  KALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNE 106
               +    AN   I+V   F + L                        +    ++ +N 
Sbjct: 579 VLRAMFRALANDERIVVVSGFTTTLDLIAKLCESEHLKYDRLQGSTPPKERTSIVRTFNN 638

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +L     + G GLNL  G N LV     W+        +     R  + G  +   
Sbjct: 639 SG-KILLLSTKAGGVGLNL-VGANRLVLVDSSWNPAH-----DLQAQARVWREGQTKPCS 691

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +Y L++  TI+E + QR   K  +   L
Sbjct: 692 IYRLLSTGTIEERMFQRQELKGALARTL 719


>gi|116193103|ref|XP_001222364.1| hypothetical protein CHGG_06269 [Chaetomium globosum CBS 148.51]
 gi|88182182|gb|EAQ89650.1| hypothetical protein CHGG_06269 [Chaetomium globosum CBS 148.51]
          Length = 1203

 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 32   CLQLANGA-------VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
              QL N A         Y            K+  +  ++++        I+   + + L 
Sbjct: 998  LKQLRNDADRNKEARRRYMRYLRDNWEDSAKVTRVIDLLKEIQETGEKTIIFSQWTTLLD 1057

Query: 83   ------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
                        R  +   +     +D          +  ++     +   GLNL    +
Sbjct: 1058 MIECQIKDKLNLRYCRYTGKMSRNQRDEAVQDFIENPRNTVMLVSLRAGNAGLNLT-VAS 1116

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++    +W+       IE   V R  + G +R V V+ ++ + T+++ +L     K  +
Sbjct: 1117 RIIICDPFWNP-----FIEAQAVDRAHRIGQQREVKVHRILVKETVEDRILALQNNKRKL 1171

Query: 191  QDLLLNALKKETI 203
             +  L+  + + +
Sbjct: 1172 VEAALDEGQSKNV 1184



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 3/44 (6%), Positives = 8/44 (18%), Gaps = 6/44 (13%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVY 41
           Y   + +             +     N     ++  Q       
Sbjct: 725 YRDLESKSQVQFNKFLRAGTVGKNYSNILVLLLRLRQACCHPHL 768


>gi|324499657|gb|ADY39859.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 2707

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 42/231 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKIKAL 59
            K Y       +  L        +  +  ++  +  N     +  EE+   E+        
Sbjct: 1367 KYYRAILERNFSHLCKGT-SVPSLMNTMMELRKCCNHPFLINGAEEQIISEMKTVHPDWS 1425

Query: 60   EVIIEKA---------------------NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
            E  + +                      +   +++       L  +++         +  
Sbjct: 1426 EEELYQHALVQSSGKLVLIAKLLPKLRADGHKVLIFSQMVRVLDIIEEFLVVQNYTFERI 1485

Query: 98   ---------PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +   +    +      + G G+NL    + ++ F   W+ +    
Sbjct: 1486 DGNVRGDLRQTAIDRFSKKDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1541

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G  + V VY LI  NT +  +  +   K  +   +L +
Sbjct: 1542 --DLQAQARCHRIGQTKMVKVYRLITCNTYEREMFDKASLKLGLDKAVLQS 1590


>gi|296421483|ref|XP_002840294.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636509|emb|CAZ84485.1| unnamed protein product [Tuber melanosporum]
          Length = 1154

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 33/220 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------------KH 47
            K Y     E           + ++A+  ++  Q A   + + +                 
Sbjct: 894  KDYLDLAAEAIAARAAGQKASKSNANVMMQLRQAAIHPLLFRKHYTDAKILQMSHAILGE 953

Query: 48   WKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK-------- 96
             + +   K++AL  ++ +       +++   F   L  L+      G    +        
Sbjct: 954  DEWMASGKVEALSKLLIEMREKGDRVLIFSQFTQVLDLLELVMTTHGFGFLRIDGSTPVD 1013

Query: 97   -DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I ++  E  I        + G G+NL    N ++ F   ++  +     +     
Sbjct: 1014 MRQDMIDQYHEEEDIMTFLLSTKAGGFGINL-ACANKVIIFDSSFNPHD-----DAQASD 1067

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G  R V V  L+ + TI+E +L    TK  +   +
Sbjct: 1068 RAHRVGQTREVEVIRLVTKGTIEEQILALANTKLALDQSI 1107


>gi|62740093|gb|AAH94093.1| LOC733207 protein [Xenopus laevis]
          Length = 1416

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 720 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKAPEENEFYNRQEALQH 779

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +     +   +          
Sbjct: 780 LIRSSGKLILLDKLLVRLRERGNRVLIFSQMVRMLNILAEYLKSRQFPFQRLDGSIKGEI 839

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 840 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 893

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 894 RAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRM 937


>gi|289613314|emb|CBI59727.1| unnamed protein product [Sordaria macrospora]
          Length = 1846

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ K        ++       L      
Sbjct: 1503 KRLLQYDCG----------------KLQALDKLLRKLQAGGHRALIFTQMTKYLRLDG-- 1544

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +++       +N + +I        S G G+NL  G + ++F+   W+      
Sbjct: 1545 ---ATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPA---- 1596

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++   +
Sbjct: 1597 -MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGE 1648


>gi|242013509|ref|XP_002427447.1| Helicase, putative [Pediculus humanus corporis]
 gi|212511833|gb|EEB14709.1| Helicase, putative [Pediculus humanus corporis]
          Length = 2228

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               +A+       +    +    K++ L+ ++ K   N   +++       L  L+    
Sbjct: 1520 LHPIASSMCTQFPDPRLIQYDCGKLQVLDKLLRKLKMNHHKVLLFTQMTRMLDILEAFLN 1579

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1580 YHGHIYLRLDGTTKVDQRQVLMERFNGDKRIFCFILSTRSGGIGVNLT-GADTVIFYDSD 1638

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ T++E +L++   K  + DL +  
Sbjct: 1639 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISEMTVEENILKKANQKRLLGDLAIEG 1692


>gi|195379440|ref|XP_002048487.1| GJ13998 [Drosophila virilis]
 gi|194155645|gb|EDW70829.1| GJ13998 [Drosophila virilis]
          Length = 2012

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS S           +   +  N    +              
Sbjct: 980  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAPTSAGGI 1039

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++++  +    +++       L  L+      +   +     
Sbjct: 1040 YEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGS 1099

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1100 ITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1153

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1154 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1199


>gi|4584529|emb|CAB40760.1| putative protein [Arabidopsis thaliana]
 gi|7270094|emb|CAB79908.1| putative protein [Arabidopsis thaliana]
          Length = 1067

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 32/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  +K  Q+ +      + +   E  +E       
Sbjct: 354 EVYKAVITNNYQVLTKKRDAKIS--NVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLE 411

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
                ++    ++  K     +++   F   L  L+  F              +  +   
Sbjct: 412 ASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQV 471

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 472 RIDRFNAENSNRFCFLLSTRAGGIGINL-ATADTVIIYDSDWNP-----HADLQAMARVH 525

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G    V +Y LI + T++E +++  + K  ++ L++ 
Sbjct: 526 RLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVG 564


>gi|68006105|ref|NP_001018299.1| SNF2 family helicase Ino80 [Schizosaccharomyces pombe 972h-]
 gi|206557976|sp|O14148|INO80_SCHPO RecName: Full=Putative DNA helicase ino80
 gi|159884046|emb|CAB16246.2| SNF2 family helicase Ino80 [Schizosaccharomyces pombe]
          Length = 1604

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
               K+  L+ ++ +  AN   +++ +     +  +++                +   +  
Sbjct: 1427 DSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1486

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +     ++ +      + G G+NL    + ++F+   W+       I+   + R  +
Sbjct: 1487 MVTEWQTRPELFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPS-----IDSQAMDRAHR 1540

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             G ++ V VY  I + TI+E ++ R + K  +Q ++++  +    
Sbjct: 1541 IGQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPT 1585



 Score = 36.3 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 3    QYHKFQRE-LYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y   +R+    +L  + I        +  +  ++  ++ N    ++ E     +     
Sbjct: 1099 LYQALRRQISIAELLEKAILGGDDTVASIMNLVMQFRKVCNHPDLFEREDVRSPLSLATW 1158

Query: 57   KALEVIIEKAN 67
                 I  + N
Sbjct: 1159 SKSIYINREGN 1169


>gi|15217826|ref|NP_171767.1| DNA repair protein, putative [Arabidopsis thaliana]
 gi|332189335|gb|AEE27456.1| putative DNA repair protein [Arabidopsis thaliana]
          Length = 678

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 21/170 (12%)

Query: 50  EVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------- 94
                KI+AL      ++E+  +A  IV   F S L  +  A  +               
Sbjct: 503 FKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKA 562

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            KD        E    +L     + G  LNL    + +     WW+       +ER    
Sbjct: 563 AKDAALKNFKEEPDCRVLLMSLQAGGVALNLTA-ASHVFMMDPWWNPA-----VERQAQD 616

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R  + G  + V V   I + T++E +L   + K  + +  L   ++  + 
Sbjct: 617 RIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQ 666


>gi|68479793|ref|XP_716066.1| hypothetical protein CaO19.7401 [Candida albicans SC5314]
 gi|46437717|gb|EAK97058.1| hypothetical protein CaO19.7401 [Candida albicans SC5314]
          Length = 1056

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 39/228 (17%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYY--------DEEK 46
             Q E Y  L  ++I+A N             +  ++  +  N    +            
Sbjct: 386 DMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPYTTD 445

Query: 47  HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                +  K+  L+ ++   KA  + +++    +  L  L+                 + 
Sbjct: 446 EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSH 505

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     I E+N       +      + G G+NL    +I++ +   W+ +      +   
Sbjct: 506 EDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTS-ADIVILYDSDWNPQA-----DLQA 559

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + R  + G K+ V V+  + +  I+E VL+R   K  +  L++   ++
Sbjct: 560 MDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQ 607


>gi|322697599|gb|EFY89377.1| helicase SWR1 [Metarhizium acridum CQMa 102]
          Length = 1732

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 67/171 (39%), Gaps = 11/171 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + LQ   G +   +    K +   +  +   +I       + +   F +          
Sbjct: 1403 KRLLQYDCGKLQVLD----KLLRKLQAGSHRALIFTQMTKVLDILEQFLNIHGHKYLRLD 1458

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +++       +N + +I        S G G+NL  G + ++F+   W+       +
Sbjct: 1459 GATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPA-----M 1512

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++    R  + G  R V +Y L++++TI+  +L++   K  + D+++   +
Sbjct: 1513 DKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGE 1563


>gi|224062717|ref|XP_002197759.1| PREDICTED: chromodomain helicase DNA binding protein 2 [Taeniopygia
           guttata]
          Length = 1826

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 721 KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGLETLQS 780

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 781 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 938


>gi|255551623|ref|XP_002516857.1| conserved hypothetical protein [Ricinus communis]
 gi|223543945|gb|EEF45471.1| conserved hypothetical protein [Ricinus communis]
          Length = 3502

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVY----YDEEKHWKEVH---- 52
             Y K   +   +  G      A +  +  ++   + N         DE  +    H    
Sbjct: 1252 AYQKLLMKRVEENLGSIGNSKARSVHNSVMELRNICNHPYLSQLHVDEVDNLIPKHFLPP 1311

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       ++        L  +++                + ++
Sbjct: 1312 IIRLCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEEYLTMKKYRYLRLDGHTSGNE 1371

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I+++N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1372 RGALIEQFNKSNSPYFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1425

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G KR V V       T++E V      K  + +  + A
Sbjct: 1426 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1468


>gi|85014495|ref|XP_955743.1| transcriptional activator [Encephalitozoon cuniculi GB-M1]
 gi|19171437|emb|CAD27162.1| GLOBAL TRANSCRIPTIONAL ACTIVATOR (SNF2/RAD54 family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 883

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK---------DPC 99
              K+  L+ ++ K  A    +++ +     +  ++     +G T  +            
Sbjct: 724 DSGKLVVLDELLPKLKAEGHRLLMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLKASARAE 783

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I++W      +      + G G+NL    + +VF+   W+    Q       + R  + 
Sbjct: 784 VIRDWQASDKFIFLLSTRAGGLGINLTA-ADTVVFYDSDWNPTADQ-----QAMDRAHRL 837

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY LI + T++E VL+    K  IQ ++++ 
Sbjct: 838 GQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVIHG 875


>gi|307109027|gb|EFN57266.1| hypothetical protein CHLNCDRAFT_143830 [Chlorella variabilis]
          Length = 491

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 32/196 (16%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKH-------------WKEVHDEKIKALEVIIEKA---N 67
            + +      ++ N    Y                  +      K+  L V++ ++    
Sbjct: 126 QTLTVLTNLRKICNHPALYAPGGGEGQEAGGEQQEAEFDPDQSGKMAVLGVVLRESISGA 185

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              ++V     + L                 G  + K    +  +N     +      + 
Sbjct: 186 GERVVVVSQSTAALDLKLCDGCGFKTVRIDGGTDVGKRQDVVNSFNRHG--VFLLSTTAG 243

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL  G N LV     W+       ++   + R  + G K+A  VY L+   T+DE 
Sbjct: 244 GAGLNLT-GANRLVLLDSHWNPA-----MDLQAMARVWRDGQKKACVVYRLLTTGTLDEK 297

Query: 180 VLQRLRTKSTIQDLLL 195
           + QR   K  I   ++
Sbjct: 298 MYQRQLKKGDIAATMM 313


>gi|213405783|ref|XP_002173663.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001710|gb|EEB07370.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
           japonicus yFS275]
          Length = 853

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 44/210 (20%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH-----------------------DEKIKALEVI 62
                   +L N        + ++                            K+  LE +
Sbjct: 567 LKAIGILKKLCNHPDLLHITEDFEGCEKLFPQGFVPKEHRGRDRHVDSSLSGKMLVLERM 626

Query: 63  IEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI 109
           + +        I++  ++ S L   ++                 + K    + E+N+ + 
Sbjct: 627 LYRIKKETDDKIVLISNYTSTLDLFEQVCRTRGYKALRLDGTMNVSKRQRLVDEFNDPEK 686

Query: 110 P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL  G N L+ F   W+    Q       + R  + G K+  FV
Sbjct: 687 DAFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ-----QALARVWRDGQKKDCFV 740

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Y  IA  TI+E + QR   K ++   +++ 
Sbjct: 741 YRFIATGTIEEKIFQRQSHKQSLSSCVVDE 770


>gi|281208073|gb|EFA82251.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 2100

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
            +I       I +   F                L+     + ++  +  I +      +CG
Sbjct: 1792 LIYCQMTKMINILEDFVIFRKYKYLRLDGSSKLEDRRDLVDDFQTDPSIFVFLLSTRACG 1851

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL    + ++FF   W+       ++   + R  + G  + V VY LI + T++E V
Sbjct: 1852 IGINLTS-ADTVIFFDSDWNPT-----MDEQAMDRCHRLGQLKPVTVYRLITKGTVEEKV 1905

Query: 181  LQRLRTKSTIQDLLLNALKKE 201
            ++R + K  IQ +++   K E
Sbjct: 1906 IKRAKQKHQIQSIVIAGGKFE 1926


>gi|149638830|ref|XP_001506039.1| PREDICTED: similar to RAD54B protein [Ornithorhynchus anatinus]
          Length = 883

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 56/254 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K              +E            +L N      +    KE +       
Sbjct: 455 IELYRKLLNSRAISFCLQGMLENSPHLVCIGALKKLCNHPCLLFKAIKEKECNSTHDGFE 514

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLAR 83
           E  + +                                    + +  +++  ++   L  
Sbjct: 515 ETNLYEGLIDVFPPDYSPVTFPEVDSGKLRVLIKLLAVIRELSPSEKVVLVSNYTQTLTI 574

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           LQ+   +             + +    I  +N    P  +     +  G       GG+ 
Sbjct: 575 LQEICKRYGYAHTRLDGQTPISQRQHIIDGFNSKHSPDFVFLLS-SKAGGVGLNLVGGSH 633

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   + R  + G KR V +Y L+   TI+E + QR  +K ++ 
Sbjct: 634 LILYDIDWNPAT-----DIQAMARVWRDGQKRPVHIYRLLTTGTIEEKIYQRQISKQSLS 688

Query: 192 DLLLNALKK-ETIH 204
             +++  K  E IH
Sbjct: 689 GTVVDLTKASEHIH 702


>gi|317030518|ref|XP_001392709.2| SNF2 family helicase/ATPase PasG [Aspergillus niger CBS 513.88]
          Length = 892

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 76/221 (34%), Gaps = 28/221 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L  + I      +  ++     N     Y+        +         K+
Sbjct: 593 EEQERAKTIRLAKKEIAQKKMQNPIMQARLACNSPHNFYWPWMDDPTSIDETLVTASGKM 652

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQ 102
             L+ ++         I++   F + L  LQ    Q R+             D+      
Sbjct: 653 LLLDRLVPCLLNKGHKILIFSQFKTQLDILQDWATQLRSWNCCRIDGAVSQEDRRAQIKA 712

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              +    L      + G G+NL    + ++ F   W+ ++     +     R  + G  
Sbjct: 713 FNTDKNYKLFLLSTRAGGQGINLMA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQT 766

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + V VY L  + T+++ +L++  +K  ++ L++   K  ++
Sbjct: 767 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFRSL 807


>gi|281211743|gb|EFA85905.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1675

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 79/213 (37%), Gaps = 24/213 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYD---EEKHWKEVHDEKIKA 58
            +Y +   +   ++  ++       +  VK   +++N    +    +          K   
Sbjct: 931  EYGQLPMDPNSEIYKKSKTKMRGFNNVVKQLQKVSNHPYLFLTEWDINEDLIRASGKFDM 990

Query: 59   LEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN- 105
            ++ I+   KA+   +++       +  + + F                ++    + EWN 
Sbjct: 991  MDQILIKMKASGHRVLIFTQMTEIINIMVEYFSIRDWGYLRLDGSTKPEERSRLVVEWNR 1050

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      + G G+NLQ   + ++ F   W+ +     ++     R  + G    
Sbjct: 1051 KDSPYFIFVLSTHAGGLGMNLQT-ADTVIIFDSDWNPQ-----MDLQAQDRCHRVGQVNR 1104

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ LI+ +TI+E +L+R   K  +   ++ A
Sbjct: 1105 VNVFRLISASTIEERILERATDKLDLDAKIIQA 1137


>gi|317032364|ref|XP_001394676.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1137

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 45   EKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
            +   K +   KI+ L  I+  +++    IV   F S L +++    +            R
Sbjct: 896  DDDNKILPSTKIRRLMKILRRESSDHKFIVFSVFTSMLDKIEPFLKRTGIGYARYDGGMR 955

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++    +  N     +L     +   GLNL    + +V    +W+       +E   
Sbjct: 956  NDHREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FVEEQA 1009

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  +      V +Y +I + T++E ++     K  + ++ +  
Sbjct: 1010 IDRVHRLNQTVDVKIYKMIIKGTVEERIIDLQDRKRELANVTIEG 1054



 Score = 40.1 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    GE ++   +    ++  Q  N     
Sbjct: 650 MNFYQRLEQRTENSLEKMMGGEKVDYAGALVLLLRLRQSCNHPDLV 695


>gi|73986612|ref|XP_867753.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 10
            [Canis familiaris]
          Length = 1609

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 35/224 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYD---------EEKH 47
             Y   Q +      G   +           +  ++  ++ N    +          +   
Sbjct: 1009 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEVRPSTRDCGL 1068

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                   K + L+ I+ K  A    +++     S +  ++  F                +
Sbjct: 1069 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1128

Query: 96   KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++ +NE      +      + G GLNLQ   + ++ F   W+  +     +    
Sbjct: 1129 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQ 1182

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1226


>gi|149209815|ref|XP_001522282.1| hypothetical protein MGCH7_ch7g389 [Magnaporthe oryzae 70-15]
 gi|86196344|gb|EAQ70982.1| hypothetical protein MGCH7_ch7g389 [Magnaporthe oryzae 70-15]
          Length = 2047

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAF 88
            Y +      +   KI     ++ +        ++   F             DL      +
Sbjct: 1855 YFDYLDDNWITSAKISKCTQLLSEIRQKGEKTLIFSVFTSLLDLLEVGIRHDLGLRVCRY 1914

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  D     +Q++       ++     +   GLNL    + ++    +W+       
Sbjct: 1915 DGSLGRDARDKAVQDFQFNPNATIMLVSLRAGNAGLNLTA-ASQVIIMDPFWNP-----Y 1968

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            IE   V R  + G  R+V V  L+ + T+++ +++    K T+ +  LN  + + +
Sbjct: 1969 IEMQAVDRAHRMGQLRSVHVQRLVVKETVEDRIIKLQEQKRTLVEAALNGDEAKNL 2024


>gi|302680218|ref|XP_003029791.1| hypothetical protein SCHCODRAFT_58508 [Schizophyllum commune H4-8]
 gi|300103481|gb|EFI94888.1| hypothetical protein SCHCODRAFT_58508 [Schizophyllum commune H4-8]
          Length = 835

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 22/166 (13%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              KI+ L  ++         +++   F   L              +       +D+   
Sbjct: 503 DSGKIQTLLRLLEGYIGEKRKVLIFSQFTQVLDILVRVLQLKEITYRILTGSTPVDERQV 562

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N    + +      + G G+NL    ++++ F   ++        +R    R  +
Sbjct: 563 LVDEFNENEDLSVFLLSTKAGGMGINLTA-ASVVILFDQDFNP-----HNDRQAQDRAYR 616

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL---LNALKKE 201
            G  R V V  LI + TI+E +L+  +TK  + + +   ++  K E
Sbjct: 617 IGQTRDVDVVKLITRGTIEEDMLRLAQTKLALDEAVAGDVDDEKGE 662


>gi|189191134|ref|XP_001931906.1| chromodomain-helicase-DNA-binding protein 4 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973512|gb|EDU41011.1| chromodomain-helicase-DNA-binding protein 4 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1735

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HDEKIKALEVIIEKA 66
            +  E  N ++  ++  +       Y  E   +                K+  LE+++ K 
Sbjct: 994  KQQERANLSNILMQLRKCLCHPFVYSREIEERSDVAAVSHRNLVEASAKLSLLEMLLPKL 1053

Query: 67   N--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++      +   +              I ++N    PL   
Sbjct: 1054 HERGHRVLIFSQFLDMLNIIEDFLDGMQLPYQRLDGTMGSLEKQKRIDQFNAPDSPLFAF 1113

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     W+  +     +   + R  + G K  V    L  
Sbjct: 1114 LLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DLQAIARAHRIGQKNKVLCLQLAT 1167

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + +++E ++Q  + K  +  +++  L +E
Sbjct: 1168 RASVEEKIMQMGKKKMALDKVVVQDLDRE 1196


>gi|168019895|ref|XP_001762479.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
 gi|162686212|gb|EDQ72602.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase
            [Physcomitrella patens subsp. patens]
          Length = 1780

 Score = 92.9 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + LQ   G +     +    +   K +    +I       + V   F +           
Sbjct: 1039 RLLQFDCGKLQ----ELAVLLRRLKSQGHRALIFTQMTKMLDVLESFINLYGYTYMRLDG 1094

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    +Q +N   KI L      S G G+NL  G + ++F+   W+       ++
Sbjct: 1095 STKPEQRQVLMQRFNTNPKIFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----MD 1148

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 1149 LQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRILDDLVIQS 1196


>gi|157134600|ref|XP_001663323.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108870421|gb|EAT34646.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 1983

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFN---------SASKTVKCLQLANGAVYYD--------EEKHW 48
            + Q++ Y  +   N EA N           +  +   +  N    +              
Sbjct: 976  QMQKKYYKYILTRNFEALNPRGGGGACSLINIMMDLKKCCNHPYLFQAAVEEAPLGPGGS 1035

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E+        K+  LE ++++       +++       L  L+          +     
Sbjct: 1036 YEIQSLTKAAGKLVLLEKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGFGYKYERIDGG 1095

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N              + G G+NL    + ++ +   W+        +
Sbjct: 1096 ITGTLRQEAIDRFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNP-----HND 1149

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1150 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1195


>gi|62472261|ref|NP_001014591.1| Mi-2, isoform B [Drosophila melanogaster]
 gi|61678453|gb|AAX52739.1| Mi-2, isoform B [Drosophila melanogaster]
          Length = 1983

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 68/226 (30%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Q++ Y  +  +N EA NS          +  +   +  N    +             +
Sbjct: 983  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGL 1042

Query: 57   KAL---------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
              +                +   KA    +++       L  L+      +   +     
Sbjct: 1043 YEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1102

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1103 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1156

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1157 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1202


>gi|195398205|ref|XP_002057713.1| GJ18281 [Drosophila virilis]
 gi|194141367|gb|EDW57786.1| GJ18281 [Drosophila virilis]
          Length = 1924

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
            KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 795  KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELFGLQQDEALQ 854

Query: 48   WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 855  MLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQRLDGSIKGE 914

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 915  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 968

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 969  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1013


>gi|145245695|ref|XP_001395110.1| helicase swr1 [Aspergillus niger CBS 513.88]
 gi|134079817|emb|CAK40951.1| unnamed protein product [Aspergillus niger]
          Length = 1711

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1371 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1426

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N    I        S G G+NL  G + ++F+ L W+
Sbjct: 1427 GHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1485

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1486 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1539


>gi|317031266|ref|XP_001393115.2| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus niger CBS
            513.88]
          Length = 1136

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----EKA 66
               +L+ +     N  SK     +L               +   KI+    I+     + 
Sbjct: 932  SLAELKKD--AQKNKKSKLKYLRRL-----------EKTWMSSAKIEKAMEILRDVYHRE 978

Query: 67   NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+   F S L              ++     R  D++   +   +     ++   
Sbjct: 979  GNEKTIIFSQFTSLLDLLEIPIARQGWDYRRYDGSMRPADRNTSVMDFTDNEDCRIMLVS 1038

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   GLNL    + ++ F  +W+       +E   V R  + G  R V ++ ++ ++T
Sbjct: 1039 LKAGNAGLNLVA-ASQVIIFDPFWNP-----YVEEQAVDRAHRIGQVRPVQIHRIVVKDT 1092

Query: 176  IDELVLQRLRTKSTIQDLLLNA 197
            +++ +L+    K  + +  L+ 
Sbjct: 1093 VEDRILELQDKKRELVEGALDE 1114



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 4/52 (7%), Positives = 11/52 (21%), Gaps = 5/52 (9%)

Query: 4   YHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           Y+  +     ++      G      N     ++  Q         +      
Sbjct: 710 YNALEARSQNEVNRYLQQGVGRNYSNILVLLLRLRQACCHPHLIKDFTTEVN 761


>gi|312077956|ref|XP_003141528.1| CHromoDomain protein family member [Loa loa]
 gi|307763307|gb|EFO22541.1| CHromoDomain protein family member [Loa loa]
          Length = 1696

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 34/224 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 735 KYYKNILTRNFEALSPKGGGSQISLINIIMDLKKCCNHPYLFPKASIEAPKLKNGIYEGT 794

Query: 48  WKEVHDEKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K       +   K     +++       L  ++          +         
Sbjct: 795 ALVKASGKFVLLQKMLKKLKEQGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQ 854

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 855 ARQDAIDRFNAANAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 908

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +R  + G ++ V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 909 SRAHRIGQQKKVLIYRFVTRNSVEERITSVAKKKMLLTHLVVRA 952


>gi|323448278|gb|EGB04179.1| hypothetical protein AURANDRAFT_39128 [Aureococcus anophagefferens]
          Length = 711

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           + Y     +    L   N          +      N A+                     
Sbjct: 243 RLYRAIYEKSASLLSSINCGIAGLNYVQMSLRNACNHALLVRGIDDALLSEPDSLVRGSG 302

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
           K   L  ++   K+    +++   F   L  L +       + +             +I 
Sbjct: 303 KFVLLTKLLPRLKSEGRKVLIFSQFVRLLHLLAELCDTNGFMYERLDGTVKMAARQKSID 362

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N+      +      + G GLNLQ   + +V F   W+ +      +     R  + G
Sbjct: 363 RFNDPCSDAFIFLLSTRAGGVGLNLQA-ADTVVIFDSDWNPQN-----DVQAQARCHRLG 416

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V VY L+A  + +  + +R   K  ++  +L +
Sbjct: 417 QTKDVMVYRLVASRSFEGEMFERASRKLGLEKAVLGS 453


>gi|330916188|ref|XP_003297327.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
 gi|311330071|gb|EFQ94584.1| hypothetical protein PTT_07688 [Pyrenophora teres f. teres 0-1]
          Length = 1580

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           ++ Y       Y  L    +    +  +  ++  + +N A+ +   ++            
Sbjct: 695 LEYYKNILTRNYEALNEGGVGHKQSLLNIVMELKKASNHALLFPNAENKLVKPGSSKEET 754

Query: 53  -------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K  A+   +++       L  L           +       
Sbjct: 755 LKALITSSGKMMLLDRLLGKLKADGHRVLIFSQMVHMLDILTDYLKLRNYSFQRLDGTVP 814

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 815 AADRKIAIDHFNAPGSEDYCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQ 868

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 869 AMARAHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 907


>gi|255541128|ref|XP_002511628.1| helicase, putative [Ricinus communis]
 gi|223548808|gb|EEF50297.1| helicase, putative [Ricinus communis]
          Length = 860

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 30/224 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYY-------DEEKHWKEV 51
           + Y    R+    L   +  A N  S     ++  +  +    +        EE      
Sbjct: 303 RVYMSILRKELPKLLALSSAASNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKANA--APIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              K+  L+ +++K +     +I+       L              +        ++   
Sbjct: 363 ASGKLIILDQLLKKLHGSGHRVIIFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFA 422

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +        +      + G GLNL    + ++F+   W+ +     +++  V R  
Sbjct: 423 AIRSFSGQAMNAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ-----VDKQAVQRAH 476

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G    V    L+ ++T++E++++R   K  + + +L     E
Sbjct: 477 RIGQMNHVLSINLVTRHTVEEVIMRRAEKKLQLSNNVLGDDVME 520


>gi|198434196|ref|XP_002124510.1| PREDICTED: similar to helicase, lymphoid-specific [Ciona
            intestinalis]
          Length = 1444

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 29/195 (14%)

Query: 28   KTVKCLQLANGAVYYD------------EEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
              ++  +  N                  +E          +    + + K     +++  
Sbjct: 1168 MIMQLRKCCNHPYLIQYPLQPGTDIFKVDEDLITSCGKMMLLDRMLPVLKERKHKVLLFS 1227

Query: 76   HFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
               S L  LQ                 +  D+     +  N+  + L      + G G+N
Sbjct: 1228 QMTSMLDVLQDYCVMRKFSFVRFDGSTKCEDRFAYIEEFNNDPNVFLFLLSTRAGGLGIN 1287

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++ +   W+ +      +     R  + G +R V VY ++   TID+ +++R 
Sbjct: 1288 LT-GADTVIIYDSDWNPQN-----DSQAQDRCHRIGQERPVMVYRMVTMATIDQQIMERA 1341

Query: 185  RTKSTIQDLLLNALK 199
              K T++ ++++  K
Sbjct: 1342 ARKRTMEKMIMHEDK 1356


>gi|148675185|gb|EDL07132.1| mCG19747 [Mus musculus]
          Length = 1723

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +          
Sbjct: 733 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKAPEDSERESGQEVLQS 792

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 793 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 852

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 853 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 906

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 907 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|307174075|gb|EFN64762.1| DNA repair and recombination protein RAD54-like [Camponotus
           floridanus]
          Length = 682

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 42/228 (18%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------ 52
              +R +  D   +     ++ +      +L N      ++   K               
Sbjct: 367 ESIKRSMEEDDNPKKGGHLSALAAITLLKKLCNHPDLIYDKIMEKSEGFEKAAQLLPSHY 426

Query: 53  ---------DEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ---------- 90
                      K+  L+ ++          I++  ++   L   +K   +          
Sbjct: 427 STKQLLPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCNKRSYNYVRLDG 486

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T+ K    ++ +N       +      + G GLNL  G N LV F   W+        
Sbjct: 487 SMTIKKRSKVVENFNSDTSSDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN----- 540

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K+  FVY  ++  TI+E + QR   K  +   +++
Sbjct: 541 DDQAMARVWRDGQKKTCFVYRFLSTGTIEEKIFQRQAHKKALSSTVVD 588


>gi|189192520|ref|XP_001932599.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974205|gb|EDU41704.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1002

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 31/224 (13%)

Query: 1   MKQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYY--------DEEKHWK 49
           ++ Y K   +    + G            +  ++  +  N    +               
Sbjct: 440 VQWYKKILEKDIDAVNGGAGNKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHL 499

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKD 97
             +  K+  L+ ++   KA  + +++    +                          +  
Sbjct: 500 VTNAAKMVMLDKLLKRMKAQGSRVLIFSQMSRVLDIMEDYSVMRGYQYCRIDGSTAHEDR 559

Query: 98  PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              I ++N+      L      + G G+NL    +I+V F   W+ +      +   + R
Sbjct: 560 IQAIDDYNKEGSEKFLFLLTTRAGGLGINLTS-ADIVVLFDSDWNPQA-----DLQAMDR 613

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G  + V+V+  + +  I+E VL+R   K  +  L++   +
Sbjct: 614 AHRIGQTKQVYVFRFVTEMAIEEKVLERAAQKLRLDQLVIQQGR 657


>gi|322489686|emb|CBZ24946.1| putative DNA excision repair protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1280

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 56/218 (25%)

Query: 28   KTVKCLQLANG-------------------------------------AVYYDEEKHWKE 50
               +  Q+ N                                         +        
Sbjct: 822  LMNQLRQICNHADIYAVQQGADEEDRMMLGRRGAAAKLSAISATRPGQHRSFRSNNPVDL 881

Query: 51   VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
            +   K+ AL +++   K+    ++V       L  ++    Q                  
Sbjct: 882  LGSGKLNALLMMLKEWKSFGHRVLVFSQTRMMLDIIENMCEQQAYSYIRMDGATNGHYRQ 941

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +N +  I +        G G+NL  G + +V F   W+      + +     R  
Sbjct: 942  ELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNP-----ITDVQARERAW 995

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 996  RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1033


>gi|242091593|ref|XP_002441629.1| hypothetical protein SORBIDRAFT_09g030646 [Sorghum bicolor]
 gi|241946914|gb|EES20059.1| hypothetical protein SORBIDRAFT_09g030646 [Sorghum bicolor]
          Length = 373

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 67/258 (25%)

Query: 1   MKQYHKFQ----RELYCDL---QGENIEAF------NSASKTVKCLQLANGAVYYDEEKH 47
           +K Y KF     +E    +         A       +        L+L    +    E  
Sbjct: 41  LKLYDKFSSSNAKEEISTIVKANESEESAPQPKATRHVFQALQYLLKLCGHPLLATGESP 100

Query: 48  WKEV-------------------HDEKIKALEVIIEKAN---------------AAPIIV 73
              +                   H  K+ AL+ I+ +                    +++
Sbjct: 101 PNHLVDLLKEIGVGSGSELHELHHSPKLVALQEILHECGIGSEVSSPDASTAVGQHRVLI 160

Query: 74  AYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWN-EGKIPLLFAHPASC 119
                + L  ++K   Q                 +K    ++ +N +  I +L       
Sbjct: 161 FAQHKAFLDIIEKDLFQSHMRSVTYLRLDGSVDPEKRFEIVKAFNSDPTIDVLLLTTHVG 220

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + LVF    W+      M +   + R  + G ++ V V+ LI + T++E 
Sbjct: 221 GLGLNLTS-ADTLVFMEHDWNP-----MKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEK 274

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V+   R K ++ + ++NA
Sbjct: 275 VMSLQRFKVSVANAVINA 292


>gi|167383963|ref|XP_001736758.1| helicase [Entamoeba dispar SAW760]
 gi|165900796|gb|EDR27036.1| helicase, putative [Entamoeba dispar SAW760]
          Length = 954

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHDEKI 56
           Y K        + G+ +      +   +  ++ +                    +   K+
Sbjct: 350 YRKVLMGDVTVIIGDKVVKSKLNNTMTQLRKVCDHPYLMPGAEPEPYVNGEHLCLSSAKM 409

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDP-CTIQEW 104
             +E ++EK   N   I++       L  +         +     G+T  +D    I ++
Sbjct: 410 IVMEKLVEKHLKNNGKILIFSQMTRMLDIIDDYLVFKEIEHYRIDGQTQQEDRVEQINDF 469

Query: 105 NEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+    +        S G G+NLQ   + ++ +   W+ +      +   + R  + G  
Sbjct: 470 NDPNGKVSIFLLSTRSGGLGINLQS-ADTVILYDSDWNPQS-----DIQAMDRAHRIGQT 523

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V VY LI + T ++ +++    K  +  L++ + K
Sbjct: 524 KPVTVYRLICEGTAEQRLIRVAERKLMLNRLVMQSGK 560


>gi|24667055|ref|NP_649154.2| Mi-2, isoform A [Drosophila melanogaster]
 gi|281366478|ref|NP_001163476.1| Mi-2, isoform C [Drosophila melanogaster]
 gi|13124018|sp|O97159|CHDM_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein Mi-2 homolog;
            AltName: Full=ATP-dependent helicase Mi-2; Short=dMi-2
 gi|23093096|gb|AAF49099.2| Mi-2, isoform A [Drosophila melanogaster]
 gi|272455249|gb|ACZ94747.1| Mi-2, isoform C [Drosophila melanogaster]
          Length = 1982

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Q++ Y  +  +N EA NS S           +   +  N    +             +
Sbjct: 982  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGL 1041

Query: 57   KAL---------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
              +                +   KA    +++       L  L+      +   +     
Sbjct: 1042 YEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1101

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1102 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1155

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1156 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1201


>gi|71022165|ref|XP_761313.1| hypothetical protein UM05166.1 [Ustilago maydis 521]
 gi|46097807|gb|EAK83040.1| hypothetical protein UM05166.1 [Ustilago maydis 521]
          Length = 1106

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +   KI+AL+ +I +       I++   F   L  L                        
Sbjct: 914  MKSGKIQALQRLIPEIQAKGDRILIFSQFTMVLDILCVCLQHMGVKYVGFTGSTQVQDRQ 973

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + ++ N+  I +      + G G+NL    N ++ F   ++        ++    R  
Sbjct: 974  VLVDQFTNDASITVFLLSTKAGGLGINL-IAANWVILFDQDFNP-----HNDKQAADRSY 1027

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G  + V V  L+++ TIDE +      K  + D +
Sbjct: 1028 RMGQTKPVTVVKLLSRGTIDEDIHALGERKLQLADRV 1064


>gi|302405899|ref|XP_003000786.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
 gi|261360743|gb|EEY23171.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
          Length = 1103

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 49   KEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
            + +   KI+ +  I+  + +    I+   F S +  ++  F +          G   D+ 
Sbjct: 856  QILASAKIRQMMQILHKEVHEHKFIIFSQFTSMMDLIEPFFRKDGLKFTRYDGGMKNDER 915

Query: 98   PCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE-------------- 142
              ++    N+ K  +L         GLNL      ++    +W+                
Sbjct: 916  EASLDRLRNDKKTRILLCSLKCGSLGLNLTA-ATRVIIVEPFWNPVRAPSLCSRQNMAGE 974

Query: 143  --EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALK 199
                 Q +E   + R  +      V VY LI + T+++ +L     K  +    +   +K
Sbjct: 975  LLTEWQFVEEQAIDRVHRLTQTIDVIVYRLIVEATVEDRILALQEKKRLLAQTAIEGGMK 1034

Query: 200  KETI 203
            K+ +
Sbjct: 1035 KDVM 1038



 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 2   KQYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY 42
           + Y + +      L+    N+   N+    ++  Q  N     
Sbjct: 568 RFYDRLEARTDESLERMQGNMNYANALVLLLRLRQACNHPKLV 610


>gi|167517477|ref|XP_001743079.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778178|gb|EDQ91793.1| predicted protein [Monosiga brevicollis MX1]
          Length = 751

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 77/221 (34%), Gaps = 30/221 (13%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y       Y +L+  +  ++ N  +  ++  +  N     D+    +           
Sbjct: 408 QYYKTILTRNYTELRDIKKSKSSNLLNIVMELKKCCNHTNLIDDGLDNQGGPDPLTRLLR 467

Query: 53  -DEKIKALEVIIE--KANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPC 99
              K+  L+ ++   K +   +++       L              +        ++   
Sbjct: 468 GSGKLILLDKLLTRLKESGHRVLIFSQMVVMLDVLAYYLALRQYQYQRLDGNTKHEQRKR 527

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+ +      +     R  
Sbjct: 528 AINHFNAEGSTDFAFLLSTRAGGLGVNL-ATADTVIIYDSDWNPQN-----DLQAQARAH 581

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G  + V +Y L++++T++E +LQR + K  +  L++  +
Sbjct: 582 RIGQTKQVNIYRLVSKSTVEEDILQRAKQKMVLDHLVIQRM 622


>gi|42567315|ref|NP_194918.2| chromatin remodeling factor, putative [Arabidopsis thaliana]
          Length = 1202

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 32/219 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  +K  Q+ +      + +   E  +E       
Sbjct: 464 EVYKAVITNNYQVLTKKRDAKIS--NVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLE 521

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
                ++    ++  K     +++   F   L  L+  F              +  +   
Sbjct: 522 ASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQV 581

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 582 RIDRFNAENSNRFCFLLSTRAGGIGINL-ATADTVIIYDSDWNP-----HADLQAMARVH 635

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G    V +Y LI + T++E +++  + K  ++ L++ 
Sbjct: 636 RLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVG 674


>gi|45384232|ref|NP_990390.1| BRG1 protein [Gallus gallus]
 gi|996018|emb|CAA62831.1| BRG1 protein [Gallus gallus]
          Length = 1630

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1004 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1063

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1064 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1123

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1124 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1179

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1180 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1228


>gi|297736923|emb|CBI26124.3| unnamed protein product [Vitis vinifera]
          Length = 2266

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   +  G      A +  +  ++   + N          E  +    H    
Sbjct: 1303 AYQKLLMKRVEENLGSIGSTKARSVHNSVMELRNICNHPYLSQLHADEVDNLIPKHFLPP 1362

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ ++ K       ++        L  +++                +   
Sbjct: 1363 VVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLHWKQYRYLRLDGHTSGGD 1422

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I+++N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1423 RGALIEQFNQPDSPYFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQA 1476

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G KR V V  L    T++E V      K  + +  + A
Sbjct: 1477 RAHRIGQKRDVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1519


>gi|170117369|ref|XP_001889872.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164635212|gb|EDQ99523.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 672

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIKALEVII- 63
           +R    DL  E++     A       Q+   +     +    E   +   K++ L  ++ 
Sbjct: 436 KRGALFDLVKEDMSVMTDAEL-----QIFCASYKSTRKYLQDENCYLDAGKVQTLLKLLS 490

Query: 64  -EKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW-NEGKIPL 111
                   +++   F   L                      +D     + E+  +  IP+
Sbjct: 491 TYDREGRKVLIFSQFTQILDILQAVLNNNKIKYLILTGSTPVDVRQTLVDEFTEDETIPV 550

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    +++V F   ++        +R    R  + G KR V V  LI
Sbjct: 551 FLLSTKAGGMGINLTA-ASVVVMFDQDFNP-----HNDRQAQDRAYRIGQKRDVDVVKLI 604

Query: 172 AQNTIDELVLQRLRTKSTIQDLL 194
           ++ TI+E +L+  +TK  + + +
Sbjct: 605 SRGTIEEDMLKLGQTKLALDEAV 627


>gi|4325130|gb|AAD17276.1| dMi-2 protein [Drosophila melanogaster]
          Length = 1982

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
              Q++ Y  +  +N EA NS S           +   +  N    +             +
Sbjct: 982  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGL 1041

Query: 57   KAL---------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
              +                +   KA    +++       L  L+      +   +     
Sbjct: 1042 YEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1101

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1102 ITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1155

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1156 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1201


>gi|116214441|ref|XP_001230237.1| hypothetical protein CHGG_11061 [Chaetomium globosum CBS 148.51]
 gi|88175416|gb|EAQ82885.1| hypothetical protein CHGG_11061 [Chaetomium globosum CBS 148.51]
          Length = 2030

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++ L+ ++ +        ++       L  L++ 
Sbjct: 1402 KRLLQYDCG----------------KLQTLDKLLRRLQAGGHRALIFTQMTKVLDILEQF 1445

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1446 LNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYD 1504

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1505 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKAGQKQMLDDVVIQ 1559

Query: 197  ALK 199
              +
Sbjct: 1560 EGE 1562


>gi|312220751|emb|CBY00692.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1566

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN-E 106
             + E  +    +V       L  +Q                  G    K    + ++N +
Sbjct: 1331 DLPEAVSQHRALVFCQMKEMLDMVQHNVLEKLLPSVQFMRLDGGVEATKRQEIVNKFNSD 1390

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++     +   + R  + G K+ V 
Sbjct: 1391 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVN 1444

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  +   ++N
Sbjct: 1445 VYRIVTRGTLEEKILNLQRFKIDVASTVVN 1474


>gi|316968996|gb|EFV53166.1| putative SNF2 family N- domain protein [Trichinella spiralis]
          Length = 1667

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 21/180 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                 E    E    K+++L  ++   +A     ++       L  L+        +   
Sbjct: 1253 RLCFPELRLIEYDCGKLQSLSALLRRLQAEGHRCLIFTQMARMLDILEAFLSYHGYMYLR 1312

Query: 96   --------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +    ++ +N + KI        S G G+NL  G + ++F+   W+      
Sbjct: 1313 LDGATNIERRQMLMERFNHDKKILCFILSTRSGGVGVNLT-GADTVIFYDSDWNPT---- 1367

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
             ++     R  + G  R V +Y LI + TI+E +L +   K  + +L ++    K +  H
Sbjct: 1368 -MDAQAQDRCHRIGQTRDVHIYRLICERTIEENILLKATQKRKLGELAIDEGGFKADFFH 1426



 Score = 35.5 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            Y +F        Q      FN  S  ++  ++ N    +++      +
Sbjct: 478 LYDEFMSRSNTKAQLATGSIFNIISVLMQLRKVCNHPNLFEQRPVMSPL 526


>gi|126322837|ref|XP_001362872.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily a, member 4,
            isoform 1 [Monodelphis domestica]
          Length = 1644

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1006 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1065

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1066 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1125

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1126 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1181

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1182 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1230


>gi|302655807|ref|XP_003019687.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
 gi|291183425|gb|EFE39042.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
          Length = 629

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---- 90
           ++NG     E K W       +  +   I +     I++  ++   L   ++        
Sbjct: 366 VSNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRARAYG 425

Query: 91  ------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + K    + ++N+      +      + G G+NL  G N LV F   W+  
Sbjct: 426 CIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINL-VGANRLVLFDPDWNPA 484

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q       + R  + G  +  FVY  IA  TI+E + QR   K ++   ++++ +
Sbjct: 485 ADQ-----QALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 536


>gi|224126033|ref|XP_002319739.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222858115|gb|EEE95662.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2045

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 73/267 (27%)

Query: 1    MKQYHK----FQRELYCDLQGENIEAF------------NSASKTVKCLQLANGAVYYDE 44
            +K Y +      R+    +   +  A             +        L+L +  +    
Sbjct: 1707 LKLYEQFSGSLVRQEISSMVKLDDSAQPEGNSASPKASTHVFQALQYLLKLCSHPLLVAG 1766

Query: 45   EKHWKEV----------------------HDEKIKALEVIIEKAN--------------- 67
            EK  + +                      H  K+ AL+ I+E+                 
Sbjct: 1767 EKMPESLVCRLHELLPPNCDILSELHKLHHSPKLVALQEILEECGIGVDASSSDNAVSVG 1826

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWN-EGKIPLLF 113
               +++     + L  +++     +               +K    ++ +N +  I  L 
Sbjct: 1827 QHRVLIFAQHKALLDIIERDLFHSQMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALL 1886

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GLNL    + LVF    W+        +   + R  + G K+ V V+ LI +
Sbjct: 1887 LTTHVGGLGLNLTS-ADTLVFMEHDWNPMR-----DLQAMDRAHRLGQKKVVNVHRLIMR 1940

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKK 200
             T++E V+   + K ++ + ++NA   
Sbjct: 1941 GTLEEKVMSLQKFKVSVANAVINAENA 1967


>gi|118781463|ref|XP_311484.3| AGAP010462-PA [Anopheles gambiae str. PEST]
 gi|116129961|gb|EAA07201.4| AGAP010462-PA [Anopheles gambiae str. PEST]
          Length = 1529

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1025 LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHIGVQ 1084

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1085 GTVTGPDLYRASGKFELLDRILPKLKATGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLD 1144

Query: 91   -GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    ++++N              + G GLNLQ   + +V F   W+  +    
Sbjct: 1145 GTTKSEERGDLLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1199

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1200 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1248


>gi|50557340|ref|XP_506078.1| YALI0F31053p [Yarrowia lipolytica]
 gi|49651948|emb|CAG78891.1| YALI0F31053p [Yarrowia lipolytica]
          Length = 1869

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F   +  +      G T  +     +Q++N +  I +L       G GLNL  G + ++F
Sbjct: 1673 FKKYMPTVTFMRLDGSTEARHRHDIVQKFNADPSIDVLLLTTHVGGLGLNLT-GADTVIF 1731

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+      M +   + R  + G K+ V VY LI +NT++E ++   + K  I   +
Sbjct: 1732 VEHDWNP-----MNDLQAMDRAHRIGQKKVVNVYRLITRNTLEEKIMGLQKFKLNIASTV 1786

Query: 195  LN 196
            +N
Sbjct: 1787 IN 1788


>gi|268567385|ref|XP_002639966.1| Hypothetical protein CBG10790 [Caenorhabditis briggsae]
          Length = 1463

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 75/220 (34%), Gaps = 31/220 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE----------VH 52
           Y     + Y +L      + N      ++  +  N A    +  +  +            
Sbjct: 663 YKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDYIYDDAQGRLQQLLKS 722

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++ +       +++       L  LQ+     R   +              
Sbjct: 723 SGKLILLDKLLCRLRDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQA 782

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N              + G G+NL    + ++ F   W+ +      +   ++R  +
Sbjct: 783 LDHYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRAHR 836

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 837 IGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 876


>gi|297694662|ref|XP_002824591.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like isoform 2
            [Pongo abelii]
          Length = 2302

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|293358941|ref|XP_232354.4| PREDICTED: chromodomain helicase DNA binding protein 4 [Rattus
            norvegicus]
          Length = 1967

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|258576789|ref|XP_002542576.1| helicase SWR1 [Uncinocarpus reesii 1704]
 gi|237902842|gb|EEP77243.1| helicase SWR1 [Uncinocarpus reesii 1704]
          Length = 1614

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAY 75
            E     + A    + LQ   G                K++ L+ ++ +        ++  
Sbjct: 1260 EAQTRLSIAFPDKRLLQYDCG----------------KLQQLDKLLRQLQAGGHRALIFT 1303

Query: 76   HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
                 L  L++                   +     + +N + +I +      S G G+N
Sbjct: 1304 QMTKMLDILEQFLNVHGHRYLRLDGSTKIEQRQMLTERFNNDPRILVFILSSRSGGLGIN 1363

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++F+ L W+       +++    R  + G  R V +Y L+++ TI+  +L++ 
Sbjct: 1364 LT-GADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEYTIESNILRKA 1417

Query: 185  RTKSTIQDLLLNA 197
              K  + D+++  
Sbjct: 1418 NQKRMLDDVVIQE 1430


>gi|201066350|ref|NP_001128432.1| RAD54 like [Rattus norvegicus]
 gi|197246624|gb|AAI69034.1| Rad54l protein [Rattus norvegicus]
          Length = 748

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +F R+   + +  E   + +S S      +L N      ++   +E          
Sbjct: 422 ELYKRFLRQAKPEEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEGTLGIF 481

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP------- 89
                          K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 482 PPGYNSKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYV 541

Query: 90  ---QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 542 RLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 599

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 ----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|149239498|ref|XP_001525625.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451118|gb|EDK45374.1| DNA repair and recombination protein RAD54 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 875

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 49/222 (22%)

Query: 26  ASKTVKCLQLANGAVYYD---------------------------EEKHWKEVHDEKIKA 58
                   +L N     +                             +  +     K + 
Sbjct: 577 LKAIGMLKKLCNHPDLLNLPDDIEGCDDLIPEDYVSSIHGHGGGGRNREIQTWFSGKFQV 636

Query: 59  LEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           LE  + K        I++  ++   L  ++K                 ++K    +  +N
Sbjct: 637 LERFLHKIKRETNDKIVLISNYTQTLDLIEKMCRYKKYGALRLDGTMNINKRQKLVDRFN 696

Query: 106 EGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +      +      + G G+NL  G N LV     W+    Q       + R  + G K+
Sbjct: 697 DPDGAEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQ-----QALARVWRDGQKK 750

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             F+Y  I+  TI+E + QR   K ++   +++  K++   +
Sbjct: 751 DCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE-KEDVERL 791


>gi|123432105|ref|XP_001308354.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121890030|gb|EAX95424.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1612

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 40/206 (19%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV---------------------HDEKIKALEVIIE-- 64
             ++  ++ N          + E                         K+  L+ ++   
Sbjct: 509 LMMQLRKVCNHPYLIKGASEFIEKMIREKLSQASEDEIQLQALIESSGKMILLDKLLPKL 568

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLF 113
                 +++       L  ++    +               +    I  + N     +  
Sbjct: 569 HQEGHKVLIFSQMVKVLDIIEDYLIKKDIDCERIDGNVPEPERNAAIDRFVNNENCYIFL 628

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ +   W+ +      +    +R  + G  + V VY L+ +
Sbjct: 629 LCTRAGGVGINLTA-ADTVIIYDSDWNPQN-----DIQAQSRCHRIGQTQKVKVYRLVTR 682

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T +  +L R   K  +   LL+  +
Sbjct: 683 GTYELEMLDRASKKLGLDHALLDGGE 708


>gi|322711493|gb|EFZ03066.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1025

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQKA 87
            +   +     E+   K+  L  +I   + N   ++V   F+  +              + 
Sbjct: 834  LKQFDISSAAELDSGKVTKLLELIRQYQENGDRVLVFSKFSRLIDLLQEVLALQGIDHRV 893

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +    I E+N    IP+      + G G+NL    N ++ F    + ++   
Sbjct: 894  LMGSTDVSERQVLIDEFNGNANIPVFLLTTGAGGTGINLTA-ANKVIIFDQSDNPQD--- 949

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G KR V V  LIA  TI+ELV +  + K  + + +  AL+
Sbjct: 950  --DIQAENRAHRLGQKRDVEVVRLIASQTIEELVYKACQKKIELANKVTGALE 1000


>gi|309361198|emb|CAP30097.2| hypothetical protein CBG_10790 [Caenorhabditis briggsae AF16]
          Length = 1465

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 75/220 (34%), Gaps = 31/220 (14%)

Query: 4   YHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE----------VH 52
           Y     + Y +L      + N      ++  +  N A    +  +  +            
Sbjct: 665 YKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDYIYDDAQGRLQQLLKS 724

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++ +       +++       L  LQ+     R   +              
Sbjct: 725 SGKLILLDKLLCRLRDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQA 784

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N              + G G+NL    + ++ F   W+ +      +   ++R  +
Sbjct: 785 LDHYNAPGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRAHR 838

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 839 IGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRM 878


>gi|270014503|gb|EFA10951.1| hypothetical protein TcasGA2_TC004111 [Tribolium castaneum]
          Length = 1441

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP 89
               L   +     +K        K+  L+ +++  K     +++       +  L++   
Sbjct: 1066 LRPLKGWSYIAIPDKETLVTDSGKLSVLDGLLKRLKEEGHRVLIYSQMTKMIDLLEEYMW 1125

Query: 90   QGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                             +            I +      + G G+NL    + ++F+   
Sbjct: 1126 HRHHKYMRLDGSSKISERRDMVADFQARTDIFVFLLSTRAGGLGINLTA-ADTVIFYDSD 1184

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       +++  + R  + G  + V VY LI + +I+E +LQR R KS IQ L+++ 
Sbjct: 1185 WNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGSIEERILQRAREKSEIQKLVISG 1238


>gi|156097857|ref|XP_001614961.1| helicase [Plasmodium vivax SaI-1]
 gi|148803835|gb|EDL45234.1| helicase, putative [Plasmodium vivax]
          Length = 1795

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                    +   K+ ALE ++   K      ++   F   L  L+               
Sbjct: 1388 FPLNKDITLGSGKLFALEKLLNKCKREGNKCLLFTQFIKMLDILEVFLNHLNYTFIRLDG 1447

Query: 91   GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +++    + ++N  K I L  +   S   G+NL    N+++F+   W+       I+
Sbjct: 1448 STKVEQRQKIVTKFNNDKSIFLFISSTRSGSIGINLTA-ANVVIFYDTDWNPS-----ID 1501

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +  + R  + G  + V V+  + + T++E + ++   K  + 
Sbjct: 1502 KQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLD 1543


>gi|255731139|ref|XP_002550494.1| chromo domain protein 1 [Candida tropicalis MYA-3404]
 gi|240132451|gb|EER32009.1| chromo domain protein 1 [Candida tropicalis MYA-3404]
          Length = 1423

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G      +  +   +  + +N    +D  +              
Sbjct: 602 EYYKNIITKNYAALNAGNKGSQISLLNVMSELKKASNHPYLFDGAEERVLEKAGSYSREN 661

Query: 51  ------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                 +   K+  LE ++   K     +++       L  L                  
Sbjct: 662 TLRGMIMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTI 721

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +   +I  +N              + G G+NL    + ++ F   W+ +      + 
Sbjct: 722 PSSQRKISIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 775

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 776 QAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 821


>gi|171687365|ref|XP_001908623.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943644|emb|CAP69296.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1001

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----------- 53
            +  + L   +    ++  N    T +   L +    +   + +K +             
Sbjct: 757 EEMAKVLMKRIPQSELKQPNLGHLTNELKAL-SDFELHLWCRDYKCIRSFDLPDGSWGEC 815

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTI 101
            K+K+L  +I   + N    +V   F   +  L +                   +    I
Sbjct: 816 AKVKSLLKLIRGYQKNGDRALVFTRFAKVIEILGECLASEGVEYLSLQGNTDVSERQELI 875

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++N +  IP+      S G G+NL    N ++ F    + ++     +     R  + G
Sbjct: 876 NQFNADPTIPVFLLTTGSGGTGINLTA-ANKVIIFDQSDNPQD-----DIQAENRAHRLG 929

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R V +  LI++ T++ELV +  + K  + + +
Sbjct: 930 QTRPVEIVRLISEGTVEELVYKACQKKLELANKV 963


>gi|157877576|ref|XP_001687105.1| helicase [Leishmania major strain Friedlin]
 gi|68130180|emb|CAJ09491.1| putative helicase [Leishmania major strain Friedlin]
          Length = 1285

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
               K++ LE  +   + +   +++   F   L  L++     G    +            
Sbjct: 867  DCGKLQFLETALKKMRDDGHRMLIFTQFVHMLNILERFLALIGVVYTRLDGSTKAELRQQ 926

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N + +I  +     S G GLNL  G + ++F+   W+       ++     R  +
Sbjct: 927  YVDRFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT-----MDLQAQDRCHR 980

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI+++T++E +L++ R +  + ++++
Sbjct: 981  IGQTRPVTIYRLISEHTVEESILEKARERKKLNNVVI 1017


>gi|301607806|ref|XP_002933489.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 1708

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 634 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPEENEFYNRQEALQH 693

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +     +   +          
Sbjct: 694 LIRSSGKLILLDKLLVRLRERGNRVLIFSQMVRMLDILAEYLKSRQFPFQRLDGSIKGEV 753

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 754 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 807

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 808 RAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRM 851


>gi|270009357|gb|EFA05805.1| hypothetical protein TcasGA2_TC030720 [Tribolium castaneum]
          Length = 729

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 15  LQGENIEA-FNSASKTVKCLQLANGAVYYDE---------------------EKHWKEVH 52
           L    ++A  ++ +      +L N      +                     +K      
Sbjct: 398 LNDVEVKASLSALASITTLKKLCNHPDLIMDKILEGGEGFEKSRHLLPPNYNDKDVMPQL 457

Query: 53  DEKIK---ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
             K+         ++      +++  ++   L   +K   +            ++ K   
Sbjct: 458 SGKLMLLDCFLANLKNNYNDKVVLVSNYTQTLDLFEKLCRKRGYRYVRLDGTMSIKKRAK 517

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N+ +    +      + G GLNL  G N L+ F   W+        +   + R  
Sbjct: 518 VVANFNDPESGEFIFMLSSKAGGCGLNL-IGANRLIMFDPDWNPAN-----DDQAMARVW 571

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G ++  ++Y  +A  TI+E + QR   K  +   +++
Sbjct: 572 RDGQQKPCYIYRFLAAGTIEEKIFQRQAHKKALSSTVVD 610


>gi|325089685|gb|EGC42995.1| chromodomain helicase [Ajellomyces capsulatus H88]
          Length = 1552

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 717 LEYYKNILTKNYAALNQGGKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 776

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 777 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDIRGYAYQRLDGTIA 836

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 837 AGPRRLSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 890

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 891 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 929


>gi|189458810|ref|NP_001074814.2| chromodomain helicase DNA binding protein 2 [Mus musculus]
          Length = 1827

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +          
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKAPEDSERESGQEVLQS 785

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 899

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 900 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 943


>gi|302420893|ref|XP_003008277.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
 gi|261353928|gb|EEY16356.1| helicase SWR1 [Verticillium albo-atrum VaMs.102]
          Length = 1183

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + LQ   G +   +    K +   +      +I       + +   F +          
Sbjct: 954  KRLLQYDCGKLQALD----KLLRKLQAGGHRALIFTQMTKVLNILEQFLNIHGHKYLRLD 1009

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +++       +N + +I        S G G+NL  G + ++F+   W+       +
Sbjct: 1010 GATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYDQDWNPA-----M 1063

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++    R  + G  R V +Y L++++TI+  +L++   K  + D+++   +
Sbjct: 1064 DKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGE 1114


>gi|226293312|gb|EEH48732.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1234

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 53   DEKIKALEVIIEKANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGR 92
              KI+    I+    +            I+   F S L              ++      
Sbjct: 1053 SAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSMN 1112

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++   ++  +     ++     +   GLNL    + ++ F  +W+       IE   
Sbjct: 1113 PNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQA 1166

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + R  + G  R V V+ ++ +NT+++ +L     K  + +  L+    + I
Sbjct: 1167 IDRAHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRALIEGALDEGASQRI 1217


>gi|123959764|ref|NP_001074204.1| transcription termination factor 2 [Bos taurus]
 gi|115545427|gb|AAI22691.1| Transcription termination factor, RNA polymerase II [Bos taurus]
          Length = 1163

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 67/245 (27%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV--------------- 61
                 A +  S+ ++  Q               E+  E +                    
Sbjct: 909  QATSSAVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLALSLEEQLSALTLSEFHNSE 968

Query: 62   ----------------------------IIEKAN-------AAPIIVAYHFNSDLA---- 82
                                        ++ +         +   ++   + S L     
Sbjct: 969  PSASVSLNGKSFKVELFDDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVAL 1028

Query: 83   ------RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFF 135
                               +    ++ +N  +   ++     + G GLNL  GGN L   
Sbjct: 1029 HLKRCGFTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLT-GGNHLFLL 1087

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + W+     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L
Sbjct: 1088 DMHWNPSLEDQACDRI-----YRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQIL 1142

Query: 196  NALKK 200
            +  ++
Sbjct: 1143 SGSEE 1147


>gi|149062633|gb|EDM13056.1| rCG47910, isoform CRA_a [Rattus norvegicus]
          Length = 1239

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 660 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 719

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 720 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 779

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 780 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 835

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 836 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 884


>gi|156717248|ref|NP_001096166.1| chromodomain helicase DNA binding protein 4 [Xenopus (Silurana)
            tropicalis]
 gi|126631946|gb|AAI33720.1| chd4 protein [Xenopus (Silurana) tropicalis]
          Length = 1888

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 974  KYYKFILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1033

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
                   K+  L+ ++ K   +   +++       L  L+               G T +
Sbjct: 1034 ALIKGAGKLLLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1093

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + +V +   W+        +    
Sbjct: 1094 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVVIYDSDWNP-----HNDIQAF 1147

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1148 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1189


>gi|225683923|gb|EEH22207.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 1239

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 53   DEKIKALEVIIEKANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGR 92
              KI+    I+    +            I+   F S L              ++      
Sbjct: 1058 SAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSMN 1117

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++   ++  +     ++     +   GLNL    + ++ F  +W+       IE   
Sbjct: 1118 PNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQA 1171

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + R  + G  R V V+ ++ +NT+++ +L     K  + +  L+    + I
Sbjct: 1172 IDRAHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRALIEGALDEGASQRI 1222


>gi|225432366|ref|XP_002275787.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736902|emb|CBI26103.3| unnamed protein product [Vitis vinifera]
          Length = 1080

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 442 QLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLI 501

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+        L              
Sbjct: 502 TNSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 561

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 562 ASIDAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 615

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 616 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 658


>gi|302695791|ref|XP_003037574.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
 gi|300111271|gb|EFJ02672.1| hypothetical protein SCHCODRAFT_65034 [Schizophyllum commune H4-8]
          Length = 1161

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------- 90
              +    +       K+  L+ ++++  A+   +++       +  L++           
Sbjct: 898  FIHTPAANRLIYDSGKLSGLDTLLQQLKADGHRVLLYSQMTKLMDILEEYLIYRQYKYLR 957

Query: 91   ----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +         + +  +      + G G+NL    + +VF+   W+      
Sbjct: 958  LDGSCKVETRRDLVNDWQTKPEYFVFLLSTKAGGVGINLTA-ADTVVFYDHDWNPSN--- 1013

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +   + R  + G  R V VY LI +NT+DE VL+  R K  +QD+++ 
Sbjct: 1014 --DAQAMDRAHRLGQTRQVTVYRLICRNTVDERVLKMARRKKDVQDVVVG 1061


>gi|212531233|ref|XP_002145773.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Penicillium
            marneffei ATCC 18224]
 gi|210071137|gb|EEA25226.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1177

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLAR-----------L 84
              Y +    K +   KI+    I+E           I+   F S L              
Sbjct: 990  RKYFKRLEKKWITSAKIEKAIEILEGIKESGKGEKTIIFSQFTSLLDMLEVPINRRGWKY 1049

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++        +++   ++  ++    ++     +   GLNL    + ++ F  +W+    
Sbjct: 1050 RRYDGSMNPRERNESVLEFTDKPDCDIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP--- 1105

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               IE   + R  + G  R V V+ ++ + T+++ +L+    K  + +  L+ 
Sbjct: 1106 --YIEEQAIDRAHRLGQTRPVQVHRILVEKTVEDRILELQDKKREVIEGALDE 1156



 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 3/49 (6%), Positives = 9/49 (18%), Gaps = 6/49 (12%)

Query: 2   KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDE 44
           + Y   + +                   N     ++  Q         +
Sbjct: 725 QLYDALESKTQIQFNKYLKANSVGKNYSNILVLLLRLRQACCHPHLIRD 773


>gi|296489466|gb|DAA31579.1| transcription termination factor, RNA polymerase II [Bos taurus]
          Length = 1163

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 67/245 (27%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV--------------- 61
                 A +  S+ ++  Q               E+  E +                    
Sbjct: 909  QATSSAVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLALSLEEQLSALTLSEFHDSE 968

Query: 62   ----------------------------IIEKAN-------AAPIIVAYHFNSDLA---- 82
                                        ++ +         +   ++   + S L     
Sbjct: 969  PSASVSLNGKSFKVELFDDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVAL 1028

Query: 83   ------RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFF 135
                               +    ++ +N  +   ++     + G GLNL  GGN L   
Sbjct: 1029 HLKRCGFTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLT-GGNHLFLL 1087

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + W+     Q  +RI      + G ++ V ++  + + T++E +LQ    K  +   +L
Sbjct: 1088 DMHWNPSLEDQACDRI-----YRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQIL 1142

Query: 196  NALKK 200
            +  ++
Sbjct: 1143 SGSEE 1147


>gi|154280933|ref|XP_001541279.1| hypothetical protein HCAG_03376 [Ajellomyces capsulatus NAm1]
 gi|150411458|gb|EDN06846.1| hypothetical protein HCAG_03376 [Ajellomyces capsulatus NAm1]
          Length = 1552

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 717 LEYYKNILTKNYAALNQGGKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 776

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 777 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 836

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 837 AGPRRLSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 890

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 891 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 929


>gi|114651883|ref|XP_001153458.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 2 [Pan
            troglodytes]
          Length = 2302

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|79748111|ref|NP_001032178.1| helicase, lymphoid-specific [Danio rerio]
 gi|52001265|gb|AAU21503.1| PASG [Danio rerio]
          Length = 853

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N A   +                     K   L+ ++ +       +++   
Sbjct: 580 LMLLKRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQ 639

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             S L  L                     D+D    +  ++ ++ L      + G G+NL
Sbjct: 640 MTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINL 699

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +      +     R  + G  + V V+ LI  NTIDE +L+R  
Sbjct: 700 TS-ADTVIIFDSDWNPQA-----DLQAQDRCHRIGQTKPVVVHRLITANTIDEKILERAS 753

Query: 186 TKSTIQDLLLNALK 199
            K  ++ ++++  K
Sbjct: 754 AKRKLEKMVIHKNK 767


>gi|328802689|ref|NP_001179063.1| chromodomain-helicase-DNA-binding protein 8 [Bos taurus]
          Length = 2303

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|156037672|ref|XP_001586563.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980]
 gi|154697958|gb|EDN97696.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 938

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 24/194 (12%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-----IIEKANAAPIIVAYHFNSD 80
                   ++ N      ++       +  +  L       I++K      I+  ++ S 
Sbjct: 592 LQLITMLKKVCNAPSLLVKKSDTDTPSNSNVAQLLESIPPEILKKNIVVASILVSNYTST 651

Query: 81  LARLQKAF----------PQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQY 127
           L  L                     K    +  +N     K         S G G+NL  
Sbjct: 652 LDLLMSHLSSLNLPFLRLDGSTPQAKRQDLVNTFNKTPASKYFAFLLSAKSGGAGINL-I 710

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G + LV F + W+        +   + R  + G KR+V +Y  +    +DE + QR  TK
Sbjct: 711 GASRLVLFDVDWNPAT-----DLQAMARIHRDGQKRSVKIYRFLMSGGMDEKIYQRQVTK 765

Query: 188 STIQDLLLNALKKE 201
             + D +++  K E
Sbjct: 766 IGLADSVMDGKKNE 779


>gi|50310019|ref|XP_455023.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644158|emb|CAH00110.1| KLLA0E23717p [Kluyveromyces lactis]
          Length = 1873

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 78/253 (30%), Gaps = 64/253 (25%)

Query: 2    KQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            + Y+ F ++    ++       E     +         +L N         H +      
Sbjct: 1549 QLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQS 1608

Query: 51   ------------VHDEKIKALEVIIEKA---------------------NAAPIIVAYHF 77
                         H  K++AL+ ++ +                      +   +++    
Sbjct: 1609 YLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQL 1668

Query: 78   NSDLARLQ-------------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
               L  ++                            ++++N +  I  L       G GL
Sbjct: 1669 KDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCLLLTTKVGGLGL 1728

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G + ++F    W+      M +   + R  + G K+ V VY +I + T++E ++  
Sbjct: 1729 NLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGL 1782

Query: 184  LRTKSTIQDLLLN 196
             + K  I   ++N
Sbjct: 1783 QKFKMNIASTIVN 1795


>gi|326429323|gb|EGD74893.1| hypothetical protein PTSG_07121 [Salpingoeca sp. ATCC 50818]
          Length = 808

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 64/195 (32%), Gaps = 20/195 (10%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA- 68
           +   ++    +   N     ++  +  N           +      +     +  +    
Sbjct: 540 QAVAEIN---VSMQNIL---MQLRKCCNHPYLLKYPLTPQVCTACVLCVCVCVCVRQAHP 593

Query: 69  --APIIVAYHFNSDLARLQKAFPQG-----RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
                ++      D   L+              D+     +   + +  +      + G 
Sbjct: 594 LMHTSLLFACPAQDYCWLRSFSACRLDGSVSFEDRKEEIRRFHEDDECFVFLLSTRAGGL 653

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G +  + +   W+ +     ++     R  + G  + V V+ LI  NT+D+ +L
Sbjct: 654 GLNL-VGADTCIIYDSDWNPQ-----VDLQAQDRCHRIGQSKTVLVFRLITANTVDQRIL 707

Query: 182 QRLRTKSTIQDLLLN 196
           +R   K  ++ L+++
Sbjct: 708 ERAAGKRKLERLVIH 722


>gi|297297436|ref|XP_001096619.2| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Macaca
            mulatta]
          Length = 2301

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|241157063|ref|XP_002407938.1| helicase, putative [Ixodes scapularis]
 gi|215494252|gb|EEC03893.1| helicase, putative [Ixodes scapularis]
          Length = 546

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 70/258 (27%), Gaps = 70/258 (27%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAV---------- 40
           + Y    R        + ++  +                ++  Q  +             
Sbjct: 276 RLYEDIDRWSRLTEPEKYVDPVSKKELYRNVGSRRFVALIRLQQACSHPALLKRRVLEDA 335

Query: 41  ------------------------------YYDEEKHWKEVHDEKIKALEVIIEK-ANAA 69
                                         Y    +  +     K+  L  ++E+     
Sbjct: 336 EVDCDDLLAACFSGLSLNKTADQGLDVLDKYSRCSEMERSFASCKLATLLQLLEEVPPKD 395

Query: 70  PIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK--IPLLFAHPA 117
             +V   + S LA +++                   +    +  +N       +L     
Sbjct: 396 KSVVLSKWTSLLALVEEHLGRRAIPCATIQGSVPGQRRAEIVHSFNRDPRGPKVLLLSLE 455

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL  G N +    + W+       +E     R  + G  + V +  LI   T++
Sbjct: 456 AGGVGLNL-IGANHMFALDVHWNPA-----MEAQAFDRIHRVGQTKPVVINRLICAGTVE 509

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L+    K  + D ++
Sbjct: 510 ERILELQAQKQRLADSVV 527


>gi|114326455|ref|NP_065971.2| chromodomain-helicase-DNA-binding protein 8 isoform 2 [Homo sapiens]
 gi|225356486|gb|AAI56440.1| Chromodomain helicase DNA binding protein 8 [synthetic construct]
          Length = 2302

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|297599769|ref|NP_001047786.2| Os02g0689800 [Oryza sativa Japonica Group]
 gi|255671175|dbj|BAF09700.2| Os02g0689800 [Oryza sativa Japonica Group]
          Length = 1059

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------- 89
           Y  ++   +    K++ L +++   K+     ++       L  L++             
Sbjct: 82  YFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLD 141

Query: 90  QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                ++    +Q +N   K  L      S G G+NL  G + ++F+   W+       +
Sbjct: 142 GSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----M 195

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 196 DQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 243


>gi|119473011|ref|XP_001258467.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya
            fischeri NRRL 181]
 gi|119406619|gb|EAW16570.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1276

 Score = 92.5 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 34/208 (16%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA- 69
               +L+ E   + N  SK     +L               V   KI+    I+++     
Sbjct: 1062 SLAELKKE--ASKNIKSKQKYLRRL-----------EKTWVTSAKIEKTLEILQEIQDRE 1108

Query: 70   ---PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 I+   F S L              ++     R  D++   ++  +     ++   
Sbjct: 1109 DSEKTIIFSQFTSLLDLLEVPIVRRGWGYRRYDGSMRPGDRNAAVLEFTDNPDCKIMLVS 1168

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   GLNL    + ++ F  +W+       IE   + R  + G  R V ++ ++ Q T
Sbjct: 1169 LKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEDQAIDRAHRIGQMRQVHIHRILVQKT 1222

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKETI 203
            +++ +L+    K  + D  L+   ++ +
Sbjct: 1223 VEDRILELQEKKREVIDGALDEKAQKKV 1250



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 3/54 (5%), Positives = 8/54 (14%), Gaps = 6/54 (11%)

Query: 3   QYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
            Y   + +                   N     ++  Q         +      
Sbjct: 832 IYDALESKTQVQFNKYLRANAIGRNYSNILVLLLRLRQACCHPHLMTDFSVEVN 885


>gi|73946649|ref|XP_860440.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 23 [Canis familiaris]
          Length = 1556

 Score = 92.5 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDE----EKHWKEVH 52
             Y   Q +      G   +           +  ++  ++ N    +        +   + 
Sbjct: 961  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVNCSNTVFLF 1020

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1021 CLSGFRAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 1080

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1081 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1136

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1137 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1185


>gi|73986606|ref|XP_867722.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 7
            [Canis familiaris]
          Length = 1598

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDEK 55
             Y   Q +                +  ++  ++ N    +   +               K
Sbjct: 1007 LYRHMQAKGLVGTGSFGGTK-TLMNTIMQLRKICNHPYMFQHIEDHDLSQRLDLYRASGK 1065

Query: 56   IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
             + L+ I+ K  A    +++     S +  ++  F                +     ++ 
Sbjct: 1066 FELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKT 1125

Query: 104  WNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  + G 
Sbjct: 1126 FNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQ 1179

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1180 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1215


>gi|240279419|gb|EER42924.1| chromodomain helicase hrp3 [Ajellomyces capsulatus H143]
          Length = 1540

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 705 LEYYKNILTKNYAALNQGGKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 764

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 765 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 824

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 825 AGPRRLSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 878

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 879 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 917


>gi|224052438|ref|XP_002197654.1| PREDICTED: helicase, lymphoid-specific [Taeniopygia guttata]
          Length = 824

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 74/221 (33%), Gaps = 32/221 (14%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEE----------KHW 48
           K   + ++E    ++        N   +   +   +  N     +               
Sbjct: 519 KMQEEVEKERPVVEVSISMDSEVNLKLQNIMMLLRKCCNHPYLIEYPLDPATQQFKVDED 578

Query: 49  KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
              +  K   L+ ++ +       +++       L  L                  +  +
Sbjct: 579 LVKNSGKFLLLDRMLPELKKRGHKVLLFSQMTMMLDILMDYCYLRNFKFSRLDGSMSYSE 638

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N + ++ L      + G G+NL    + ++ +   W+ +      +     R
Sbjct: 639 REENMHQFNTDPEVFLFLVSTRAGGLGINLTA-ADTVIIYDSDWNPQS-----DLQAQDR 692

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V VY L+  NTID+ +++R   K  ++ L+++
Sbjct: 693 CHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIH 733


>gi|91088413|ref|XP_966659.1| PREDICTED: similar to TATA-binding protein-associated factor 172
            [Tribolium castaneum]
 gi|270011757|gb|EFA08205.1| hypothetical protein TcasGA2_TC005832 [Tribolium castaneum]
          Length = 1810

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 77/251 (30%), Gaps = 61/251 (24%)

Query: 2    KQYHKFQRELYCDLQGENIEA----------FNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            + Y  F +        E+I +           +          + N         H +  
Sbjct: 1499 RLYEDFSKSQAHQTLQESISSGATASSMQGNTHIFQALRYLQNVCNHPKLVLNASHPQYG 1558

Query: 52   -----------------HDEKIKALEVIIEKA--------------NAAPIIVAYHFNSD 80
                             H  K+ AL+ +++                N    +V     + 
Sbjct: 1559 KILADLQTQDSKLDDISHSAKLPALKQLLQDCGIGVTEPQSTELVVNQHRALVFCQLKAM 1618

Query: 81   LARLQKAFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
            L  ++K   +                  +    +  +N +  I +L       G GLNL 
Sbjct: 1619 LDIIEKDLFKKHMPGVTYLRLDGSIPPSQRHSVVTRFNNDPSIDVLLLTTQVGGLGLNLT 1678

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G + ++F    W+      M +   + R  + G ++ V VY LI + T++E ++   + 
Sbjct: 1679 -GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQRKVVNVYRLITRATLEEKIMGLQKF 1732

Query: 187  KSTIQDLLLNA 197
            K    + +++ 
Sbjct: 1733 KVQTVNTIISG 1743


>gi|156230803|gb|AAI51850.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [synthetic construct]
          Length = 1647

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAWGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|73986604|ref|XP_867713.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 6
            [Canis familiaris]
          Length = 1610

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 36/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +          
Sbjct: 1009 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEASLGPRGGHG 1068

Query: 53   ------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                    K + L+ I+ K  A    +++     S +  ++  F                
Sbjct: 1069 LDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKA 1128

Query: 95   DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 1129 EDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQA 1182

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1227


>gi|303315865|ref|XP_003067937.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107613|gb|EER25792.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1684

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ +        ++      
Sbjct: 1340 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRQLQAGGHRALIFTQMTK 1383

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N + +I +      S G G+NL  G
Sbjct: 1384 MLDILEQFLNVHGHRYLRLDGATKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-G 1442

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1443 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1497

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1498 MLDDVVIQEGE 1508


>gi|225559675|gb|EEH07957.1| chromodomain helicase hrp3 [Ajellomyces capsulatus G186AR]
          Length = 1552

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 717 LEYYKNILTKNYAALNQGGKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 776

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 777 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 836

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 837 AGPRRLSIEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 890

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 891 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 929


>gi|260785484|ref|XP_002587791.1| hypothetical protein BRAFLDRAFT_92236 [Branchiostoma floridae]
 gi|229272944|gb|EEN43802.1| hypothetical protein BRAFLDRAFT_92236 [Branchiostoma floridae]
          Length = 206

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 74/201 (36%), Gaps = 28/201 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKALEVIIE--KAN 67
              +     +  ++  + AN    +                 +  K+  L+ ++   +A 
Sbjct: 11  GKSDKMRLLNILMQLRKCANHPYLFDGAEPGPPYTTDTHLVQNSGKMCILDKLLPRLQAE 70

Query: 68  AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAH 115
            + +++       L  L+                   ++    I ++N       +    
Sbjct: 71  GSRVLIFSQMTRMLDILEDYCIWKGWQYCRLDGQTPHEERQAQINDYNRPGSDKFIFMLS 130

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    ++++ +   W+ +     ++   + R  + G K+ V V+ +IA NT
Sbjct: 131 TRAGGLGINL-ATADVVLLYDSDWNPQ-----VDLQAMDRAHRIGQKKQVRVFRMIADNT 184

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +++ +++R  TK  +  +++ 
Sbjct: 185 VEDRIVERAETKLKLDTIVIQ 205


>gi|327283794|ref|XP_003226625.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Anolis carolinensis]
          Length = 1863

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           KQY+K    R      +G         +  ++  +  N        +  +          
Sbjct: 759 KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKSPEENERENNQEMLLS 818

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 819 LIRSSGKLILLDKLLSRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 878

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 879 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 932

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 933 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 976


>gi|168050295|ref|XP_001777595.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162671080|gb|EDQ57638.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 775

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 34/214 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVH----- 52
           K Y   ++   C   G+N    N     ++  ++ N          E    K  H     
Sbjct: 483 KNYQLLRQVGGCKPGGQNQSLLNI---MMQLRKVCNHPYLLPGSEPEGGSPKFFHEMRIK 539

Query: 53  -DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKD 97
              K+  L  ++         +++       L  L++                   + + 
Sbjct: 540 ASAKLTLLHSMLRHLKRGGHRVLIFSQMTKLLDILEEYMVFEFGAHSYERVDGSVPVAER 599

Query: 98  PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +I  +N+ +   +      SCG G+NL    + ++ +   ++        +   + R 
Sbjct: 600 QKSISRFNQDQSRFVFLLSTRSCGLGINL-ATADTVIIYDSDFNP-----HADIQAMNRA 653

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G  + + VY L+ + +++E +LQ  R K  +
Sbjct: 654 HRIGQSKTLLVYRLVVRASVEERILQLARKKLML 687


>gi|320032039|gb|EFW13995.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 1692

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ +        ++      
Sbjct: 1348 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRQLQAGGHRALIFTQMTK 1391

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N + +I +      S G G+NL  G
Sbjct: 1392 MLDILEQFLNVHGHRYLRLDGATKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-G 1450

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1451 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1505

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1506 MLDDVVIQEGE 1516


>gi|296214427|ref|XP_002753817.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8 isoform 2
            [Callithrix jacchus]
          Length = 2304

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|194207057|ref|XP_001918380.1| PREDICTED: chromodomain helicase DNA binding protein 8 [Equus
            caballus]
          Length = 2303

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|51476360|emb|CAH18170.1| hypothetical protein [Homo sapiens]
          Length = 2302

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 52   ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|327351256|gb|EGE80113.1| transcriptional accessory protein [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1913

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1591 KKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKENHKRYDEIQKSLAGKNSH 1650

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    +V       L      
Sbjct: 1651 IRDVAHAPKLTALRDLLVDCGIGVDPSTEGELDTGASYVSPHRALVFCQMKEMLDIVQND 1710

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1711 VLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1769

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1770 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1824

Query: 194  LLN 196
            ++N
Sbjct: 1825 VVN 1827


>gi|189233685|ref|XP_970280.2| PREDICTED: similar to helicase [Tribolium castaneum]
          Length = 1427

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP 89
               L   +     +K        K+  L+ +++  K     +++       +  L++   
Sbjct: 1052 LRPLKGWSYIAIPDKETLVTDSGKLSVLDGLLKRLKEEGHRVLIYSQMTKMIDLLEEYMW 1111

Query: 90   QGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                             +            I +      + G G+NL    + ++F+   
Sbjct: 1112 HRHHKYMRLDGSSKISERRDMVADFQARTDIFVFLLSTRAGGLGINLTA-ADTVIFYDSD 1170

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       +++  + R  + G  + V VY LI + +I+E +LQR R KS IQ L+++ 
Sbjct: 1171 WNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGSIEERILQRAREKSEIQKLVISG 1224


>gi|73977356|ref|XP_532624.2| PREDICTED: similar to chromodomain helicase DNA binding protein 8
            isoform 1 [Canis familiaris]
          Length = 2304

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 42/236 (17%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKH----------WK 49
            K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 780  KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 839

Query: 50   EVHD----------EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              HD           K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 840  IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 899

Query: 98   ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 900  IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 957  ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009


>gi|237756840|ref|ZP_04585323.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691004|gb|EEP60129.1| helicase SWR1 [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 383

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 34/221 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +  Y + +     +     +   N      K  Q+ N           + +H  K + L+
Sbjct: 165 LNLYERIK----YEKNFNYMMKQNLIFSLQKLRQICNFP--------PESIHSPKAERLK 212

Query: 61  VIIEK--ANAAPIIVAYHFNSD------------LARLQKAFPQGRTLDKDP--CTIQEW 104
            I+++       +++  +F ++            L   Q     G    ++      +  
Sbjct: 213 EIVKELADQKEKVVIFTNFVNEGVDKIIKNLKTILQPQQIVSYHGSLKPEEKNLAVKKFV 272

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GL L    + ++FF L W+  +           R  + G K  
Sbjct: 273 EDEKCLVFVGTINAAGEGLTLTS-SSYVIFFDLHWNPAKMW-----QAEDRVHRIGQKNK 326

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           V +Y  I QNT++E +LQ+L  K ++ + +++ +  +   V
Sbjct: 327 VNIYTFITQNTVEEKILQKLEEKRSMINNVIDDVSSDIESV 367


>gi|170592228|ref|XP_001900871.1| CHD4 protein [Brugia malayi]
 gi|158591738|gb|EDP30342.1| CHD4 protein, putative [Brugia malayi]
          Length = 1846

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 34/224 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               E  
Sbjct: 880  KYYKNILTRNFEALSPKGGGSQISLINIIMDLKKCCNHPYLFPKASIEAPKLKSGIYEGT 939

Query: 48   WKEVHDEKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K       +   K     +++       L  ++          +         
Sbjct: 940  ALVKASGKFVLLQKMLKKLKEQGHRVLIFSQMTKMLDIMEDFCENEGYKYERIDGSITGQ 999

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1000 ARQDAIDRFNAANAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1053

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R  + G ++ V +Y  + +N+++E +    + K  +  L++ A
Sbjct: 1054 SRAHRIGQQKKVLIYRFVTRNSVEERITSVAKKKMLLTHLVVRA 1097


>gi|149049417|gb|EDM01871.1| chromodomain helicase DNA binding protein 4, isoform CRA_a [Rattus
           norvegicus]
          Length = 1003

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 36  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 95

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 96  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 155

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 210 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 251


>gi|310801698|gb|EFQ36591.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1773

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 35/181 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ K        ++       L  L++ 
Sbjct: 1439 KRLLQYDCG----------------KLQALDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1482

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1483 LNIHGHKYLRLDGATKIEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYD 1541

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1542 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1596

Query: 197  A 197
             
Sbjct: 1597 E 1597


>gi|296813699|ref|XP_002847187.1| ATP-dependent helicase RIS1 [Arthroderma otae CBS 113480]
 gi|238842443|gb|EEQ32105.1| ATP-dependent helicase RIS1 [Arthroderma otae CBS 113480]
          Length = 1044

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 33/207 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y +   E+  D +G   EA    S+++                        KI+ L  I
Sbjct: 775 EYEEDATEIVTDEEGGEDEAD--LSESM-------------PSAIHDVQTSAKIRHLMRI 819

Query: 63  IEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIP 110
           +++ +     IV   F S L +++     G               ++    +  N     
Sbjct: 820 LKRESGEFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASLNRLRNSSGTR 879

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +   GLNL    + +V    +W+       +E   + R  +      V VY L
Sbjct: 880 VLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLNQTVDVKVYKL 933

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + T++E +L+    K  +    +  
Sbjct: 934 TIKGTVEERILELQERKRELAKSTIEG 960



 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G NI    +    ++  Q  N     
Sbjct: 561 YQRLEQRADRSLERMIGGHNISYAGALVLLLRLRQACNHPDLV 603


>gi|149049421|gb|EDM01875.1| chromodomain helicase DNA binding protein 4, isoform CRA_d [Rattus
           norvegicus]
          Length = 659

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 36  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 95

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 96  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 155

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 210 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 251


>gi|194214970|ref|XP_001915028.1| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) [Equus caballus]
          Length = 910

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 20/173 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
              + EE+  K     K+ A+   +  A    +++  ++   L  LQ+   +        
Sbjct: 633 PFMFTEEESGKLQVLSKLLAVIRELCPAE--KVVLVSNYTQTLNILQEVCKRHGYAYTRL 690

Query: 92  ---RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                + +    +  +N       +      + G GLNL  GG+ L+ + + W+      
Sbjct: 691 DGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPAT--- 746

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +   ++R  + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 747 --DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTK 797


>gi|194751939|ref|XP_001958281.1| GF10842 [Drosophila ananassae]
 gi|190625563|gb|EDV41087.1| GF10842 [Drosophila ananassae]
          Length = 1971

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS S           +   +  N    +              
Sbjct: 967  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAPTSAGGL 1026

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++++  +    +++       L  L+      +   +     
Sbjct: 1027 YEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGG 1086

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1087 ITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1140

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1141 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1186


>gi|68468949|ref|XP_721533.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
 gi|68469498|ref|XP_721262.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
 gi|46443171|gb|EAL02455.1| hypothetical protein CaO19.10553 [Candida albicans SC5314]
 gi|46443453|gb|EAL02735.1| hypothetical protein CaO19.3035 [Candida albicans SC5314]
          Length = 1410

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y     + Y  L  G      +  +   +  + +N    +D  +              
Sbjct: 605 EYYKNIITKNYAALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSREN 664

Query: 53  --------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                     K+  LE ++ +       +++       L  L                  
Sbjct: 665 TLKGIVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTV 724

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              K    I  +N              + G G+NL    + ++ F   W+ +      + 
Sbjct: 725 PSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 778

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 779 QAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824


>gi|159154987|gb|AAI54480.1| Hells protein [Danio rerio]
          Length = 290

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N A   +                     K   L+ ++ +       +++   
Sbjct: 17  LMLLKRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQ 76

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             S L  L                     D+D    +  ++ ++ L      + G G+NL
Sbjct: 77  MTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINL 136

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +      +     R  + G  + V VY LI  NTIDE +L+R  
Sbjct: 137 TS-ADTVIIFDSDWNPQA-----DLQAQDRCHRIGQTKPVVVYRLITANTIDEKILERAS 190

Query: 186 TKSTIQDLLLNALK 199
            K  ++ ++++  K
Sbjct: 191 AKRKLEKMVIHKNK 204


>gi|157819999|ref|NP_001100993.1| chromodomain-helicase-DNA-binding protein 2 [Rattus norvegicus]
 gi|149057183|gb|EDM08506.1| chromodomain helicase DNA binding protein 2 (predicted) [Rattus
           norvegicus]
          Length = 1834

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           KQY+K    R      +G         +  ++  +  N        +  +          
Sbjct: 733 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIRAPEDSERETGQEVLQS 792

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 793 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 852

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 853 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 906

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 907 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 950


>gi|114651885|ref|XP_001153391.1| PREDICTED: chromodomain helicase DNA binding protein 8 isoform 1
           [Pan troglodytes]
          Length = 2198

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 676 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 735

Query: 52  ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 736 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 795

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 796 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 852

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 853 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 905


>gi|328352490|emb|CCA38889.1| chromodomain-helicase-DNA-binding protein 1 [Pichia pastoris CBS
           7435]
          Length = 1387

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 75/224 (33%), Gaps = 37/224 (16%)

Query: 4   YHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y     + Y  L     EA  +  +   +  + +N    +D  +                
Sbjct: 600 YKNILTKNYAALNAGPKEAQISLLNVMAELKKTSNHPYLFDGAEEQVLANLGSSSRENIF 659

Query: 51  ----VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
               +   K+  L+ ++   K +   +++       L  L                    
Sbjct: 660 RGLIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLTFKGYSFQRLDGTVPS 719

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    I  +N       +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 720 ARRRVAIDHFNADGSQDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQA 773

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 774 MARAHRIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 817


>gi|307180236|gb|EFN68269.1| Helicase domino [Camponotus floridanus]
          Length = 2882

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 79/201 (39%), Gaps = 21/201 (10%)

Query: 8    QRELYCDLQGE---NIEAFNSASKTV-------KCLQLANGAVYYDEEKHWKEVHDEKIK 57
            +R L  +LQ +    +  F+  S  +       + +Q   G +   +      +   K +
Sbjct: 1633 ERHLQTELQRQLSPKVTVFHPISSLMLTQFPDPRLIQYDCGKLQSLDR----LLRKLKSE 1688

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
               V+I       + V   F +    +         +D+    ++ +N + +I       
Sbjct: 1689 NHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTRVDQRQILMERFNGDKRIFCFILST 1748

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             S G G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+++ T+
Sbjct: 1749 RSGGVGVNLT-GADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSEKTV 1802

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E +L++   K  + DL +  
Sbjct: 1803 EENILKKANQKRLLGDLAIEG 1823


>gi|290978132|ref|XP_002671790.1| predicted protein [Naegleria gruberi]
 gi|284085362|gb|EFC39046.1| predicted protein [Naegleria gruberi]
          Length = 1069

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 78/220 (35%), Gaps = 30/220 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHD 53
           + Y     +    ++G         +  ++  +  N    +D                + 
Sbjct: 442 EWYRSILTKDLNSIKGGE--KVRLLNVVMQLRKCCNHPYLFDGAEPGPPYTLGDHLMNNS 499

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDK-DPCTI 101
            K+  ++ +++K     + +++       L            +     G+T  +     +
Sbjct: 500 GKMYLVDKLLKKLKEQNSRVLIFTQMTRMLDILEDYCYLRNYEYCRIDGQTSSELREQHM 559

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            E+N+      +      + G G+NL    + ++ +   W+ +      +     R  + 
Sbjct: 560 DEFNKEGSSKFIFLLSTRAGGLGINL-ATADTVIIYDSDWNPQA-----DLQAQDRCHRI 613

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY LI++++I+E + QR   K  +  +++   +
Sbjct: 614 GQKKPVNVYRLISKDSIEEKIYQRAVKKLYLDAVVIQQGR 653


>gi|168702299|ref|ZP_02734576.1| helicase, Snf2 family protein [Gemmata obscuriglobus UQM 2246]
          Length = 763

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 26/207 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK- 65
            Q+    DL  + I      +  V    + +    YD++         K+     ++ + 
Sbjct: 464 LQKNYLTDLDRKRI-----LASLVNLRTICDSLFLYDKQTRV----SPKLDEFAELVPEL 514

Query: 66  ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            +   ++V   + +                     G    +    ++ +       +F  
Sbjct: 515 VSDHKLVVFSQWETMAMEAAKVLDRLGVGYVLLHGGLPGKERKAVLERFQADAACKVFLS 574

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNLQ   + +V   L W+    +Q I R+      + G  R V V   + + T
Sbjct: 575 TDAGGTGLNLQ-MADTVVNLELPWNPAVLEQRIARV-----HRMGQNRPVRVINFVTRGT 628

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           I+E VL+ + +K  +   L      E 
Sbjct: 629 IEERVLRTVESKQALFAGLFAGDADEI 655


>gi|292606963|gb|ADE34162.1| chromodomain helicase DNA-binding protein 4 [Schmidtea mediterranea]
          Length = 1868

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD---------EEKHWKEV 51
            K Y       +  L         +  +  +   +  N    +              ++ +
Sbjct: 992  KFYKYILTRNFDALSVKGGGSQISLINIVMDLKKCCNHPYLFPSGSDEAPKLRNGAYEGL 1051

Query: 52   HDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQG----------RTLD 95
               K      ++ K           +++       L  L+                 T  
Sbjct: 1052 ALIKASGKLELLYKMLPKLKTGGHRVLIFSQMTRLLDILEDFMDYMGYKFERIDGAVTGQ 1111

Query: 96   KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +   +I  +N       +      + G G+NL    + ++ +   W+        +    
Sbjct: 1112 QRQDSIDRFNAPDSVSFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1165

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G    V +Y  + +NT++E V Q  + K  +  L++
Sbjct: 1166 SRAHRIGQSNKVMIYRFVTRNTVEERVTQVAKKKMMLTHLVV 1207


>gi|115441433|ref|NP_001044996.1| Os01g0881000 [Oryza sativa Japonica Group]
 gi|56784632|dbj|BAD81679.1| putative chromatin remodeling factor CHD3 [Oryza sativa Japonica
           Group]
 gi|113534527|dbj|BAF06910.1| Os01g0881000 [Oryza sativa Japonica Group]
          Length = 1150

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 37/224 (16%)

Query: 8   QRELYCDLQGENIEAFNSASK----------TVKCLQLANGAVYYDEEKHWKEV------ 51
           QRELY ++   N    NSA +           ++  +  N  V  +  +   E       
Sbjct: 781 QRELYINILERNYSKLNSAIRNGRKLSLNNILMELRKCCNHPVGLEVGQQATEDVFLSLI 840

Query: 52  -HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DP 98
               K++ L  ++   K     +++       L  L+      G    +           
Sbjct: 841 ASSGKLQLLHKLLPRLKERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQ 900

Query: 99  CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+E+   + +  +      + G G++L  G + ++ +   ++       ++    +R 
Sbjct: 901 ESIEEYKNIDSETFIFLMSTRAGGMGVDL-PGADRVIIYDPDFNP-----FMDLQAQSRA 954

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G  R V VY LI + +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 955 HRIGQTRPVVVYQLITKCSVEEKILQKSKQKLAIENMLMNSSKK 998


>gi|73997426|ref|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 15 [Canis familiaris]
          Length = 1963

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|168057891|ref|XP_001780945.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
 gi|162667579|gb|EDQ54205.1| SNF2 family chromodomain-helicase [Physcomitrella patens subsp.
            patens]
          Length = 1677

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 42/229 (18%)

Query: 4    YHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
            Y          L   +I     +  +  ++  +L N     D  +               
Sbjct: 792  YRAIYENNISTLLKGSIATNMPSLRNVAMELRKLCNHPFLCDGLEESIVFKHRSLNDGNA 851

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                         K+  ++ ++ K       +++   F   L  L+          +   
Sbjct: 852  SNLAETLLSQSSGKMVLVDKLLPKLKEAGRRVLIFSQFTMMLDLLEDYLLSKGYSYERID 911

Query: 98   --------PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       I  +   +  I +      + G G+ L    +  + +   W+ +     
Sbjct: 912  GKIRGSDRQAAIDRYSAKDSSIFVFLLSTRAGGLGITLTA-ADTCIIYDSDWNPQN---- 966

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   + R  + G  + V +Y LI +NT ++ + +    K  + + +L 
Sbjct: 967  -DLQAMARCHRIGQTKDVKIYRLITRNTYEQRLFECSSRKYGLDEAILG 1014


>gi|157822353|ref|NP_001099841.1| helicase, lymphoid specific [Rattus norvegicus]
 gi|149062802|gb|EDM13225.1| rCG47275 [Rattus norvegicus]
          Length = 837

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKANA--APIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       ++V   
Sbjct: 563 MMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRCHKVLVFSQ 622

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    I  +N + ++ L      + G G+NL
Sbjct: 623 MTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNTDPEVFLFLVSTRAGGLGINL 682

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 683 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 736

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 737 AKRKLEKLIIH 747


>gi|296204004|ref|XP_002806940.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Callithrix jacchus]
          Length = 1738

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 711 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLS 770

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ +       +++       L  L +         +          
Sbjct: 771 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 830

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 831 RKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 884

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 885 RAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 928


>gi|73986622|ref|XP_867793.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 15
            [Canis familiaris]
          Length = 1618

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1011 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1070

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1071 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1130

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1131 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1186

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1187 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1235


>gi|238879188|gb|EEQ42826.1| chromo domain protein 1 [Candida albicans WO-1]
          Length = 1410

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y     + Y  L  G      +  +   +  + +N    +D  +              
Sbjct: 605 EYYKNIITKNYAALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSSSREN 664

Query: 53  --------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                     K+  LE ++ +       +++       L  L                  
Sbjct: 665 TLKGIVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTV 724

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              K    I  +N              + G G+NL    + ++ F   W+ +      + 
Sbjct: 725 PSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 778

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 779 QAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 824


>gi|254567734|ref|XP_002490977.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
 gi|238030774|emb|CAY68697.1| Nucleosome remodeling factor that functions in regulation of
           transcription elongation [Pichia pastoris GS115]
          Length = 1387

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 75/224 (33%), Gaps = 37/224 (16%)

Query: 4   YHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y     + Y  L     EA  +  +   +  + +N    +D  +                
Sbjct: 600 YKNILTKNYAALNAGPKEAQISLLNVMAELKKTSNHPYLFDGAEEQVLANLGSSSRENIF 659

Query: 51  ----VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
               +   K+  L+ ++   K +   +++       L  L                    
Sbjct: 660 RGLIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLTFKGYSFQRLDGTVPS 719

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    I  +N       +      + G G+NL    + ++ F   W+ +      +   
Sbjct: 720 ARRRVAIDHFNADGSQDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQA 773

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 774 MARAHRIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 817


>gi|149020473|gb|EDL78278.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_b [Rattus
            norvegicus]
          Length = 1614

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|5917757|gb|AAD56025.1|AF181828_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
          Length = 918

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 345 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 404

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 405 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 464

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 465 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 518

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 519 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 562


>gi|302893793|ref|XP_003045777.1| hypothetical protein NECHADRAFT_34187 [Nectria haematococca mpVI
            77-13-4]
 gi|256726704|gb|EEU40064.1| hypothetical protein NECHADRAFT_34187 [Nectria haematococca mpVI
            77-13-4]
          Length = 1722

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++ L+ ++ K        ++       L  L++ 
Sbjct: 1394 KRLLQYDCG----------------KLQILDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1437

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1438 LNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYD 1496

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1497 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1551

Query: 197  ALK 199
              +
Sbjct: 1552 EGE 1554


>gi|209954670|ref|NP_599195.1| transcription activator BRG1 [Rattus norvegicus]
          Length = 1613

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|76253779|ref|NP_035547.2| transcription activator BRG1 isoform 2 [Mus musculus]
 gi|50927531|gb|AAH79560.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Mus musculus]
 gi|74181104|dbj|BAE27821.1| unnamed protein product [Mus musculus]
 gi|148693262|gb|EDL25209.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_b [Mus
            musculus]
          Length = 1614

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|26353994|dbj|BAC40627.1| unnamed protein product [Mus musculus]
          Length = 747

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPEEELREGKMSVSSLSSITS-LKKLCNHPALIYDKCVAEEDGFEGTLGI 480

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ ++      ++  +++  ++   L   +K         
Sbjct: 481 FPPGYNSKAVEPQLSGKMLVLDYVLAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLY 540

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 541 VRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 599

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 600 -----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648


>gi|322694613|gb|EFY86438.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1027

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 19/178 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
            +   +     E+   K+  L  +I   + N   ++V   ++  +  LQ+         + 
Sbjct: 834  LKQFDIPSAAELDSGKVTKLLELIRQYQENGDRVLVFSKYSRLIELLQEVLALQGVDHRV 893

Query: 97   ---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                         I E+N +  IP+      + G G+NL    N ++ F L  + ++   
Sbjct: 894  LMGNTNVSERQTLIDEFNEDASIPVFLLTTGAGGTGINLTA-ANKVIIFDLSDNPQD--- 949

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +     R  + G KR V V  LIA  +I+EL+ +  + K  + + +  A   E  H
Sbjct: 950  --DIQAENRAHRLGQKRDVEVIRLIASQSIEELIYKACQKKIELANKVTGAGALEDTH 1005


>gi|301771980|ref|XP_002921404.1| PREDICTED: transcription activator BRG1-like isoform 2 [Ailuropoda
            melanoleuca]
          Length = 1606

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|298715164|emb|CBJ34003.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 573

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQGR-- 92
               +     K     K++AL      ++E+  AA  IV   F + L  ++    +G+  
Sbjct: 387 HSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQFVNMLDLIEFRMHKGQVG 446

Query: 93  --------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   ++DK    +Q +  +  + +L     + G  LNL    N +     WW+   
Sbjct: 447 CRKLSGHLSVDKREEVLQAFQTDPGVKVLLISLKAGGVALNLT-VANHIFLMDPWWNPAA 505

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q I+R       + G  + ++    I ++T++E +++    K  + D  +     
Sbjct: 506 EMQAIDR-----THRLGQFKPIYATRFIIEDTVEERIIKLQEKKQLVFDSTVGGDAA 557


>gi|145610193|ref|XP_001410153.1| hypothetical protein MGG_12631 [Magnaporthe oryzae 70-15]
 gi|145017551|gb|EDK01914.1| hypothetical protein MGG_12631 [Magnaporthe oryzae 70-15]
          Length = 1334

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAF 88
            Y +      +   KI     ++ +        ++   F             DL      +
Sbjct: 1142 YFDYLDDNWITSAKISKCTQLLSEIRQKGEKTLIFSVFTSLLDLLEVGIRHDLGLRVCRY 1201

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  D     +Q++       ++     +   GLNL    + ++    +W+       
Sbjct: 1202 DGSLGRDARDKAVQDFQFNPNATIMLVSLRAGNAGLNLTA-ASQVIIMDPFWNP-----Y 1255

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            IE   V R  + G  R+V V  L+ + T+++ +++    K T+ +  LN  + + +
Sbjct: 1256 IEMQAVDRAHRMGQLRSVHVQRLVVKETVEDRIIKLQEQKRTLVEAALNGDEAKNL 1311


>gi|73986618|ref|XP_867778.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 13
            [Canis familiaris]
          Length = 1608

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1001 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1060

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1061 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1120

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1121 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1176

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1177 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1225


>gi|261197521|ref|XP_002625163.1| TBP associated factor [Ajellomyces dermatitidis SLH14081]
 gi|239595793|gb|EEQ78374.1| TBP associated factor [Ajellomyces dermatitidis SLH14081]
 gi|239606789|gb|EEQ83776.1| TBP associated factor [Ajellomyces dermatitidis ER-3]
          Length = 1902

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 57/243 (23%)

Query: 5    HKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEV------------ 51
             K Q+++   +   + EA  +         +L N      +E H +              
Sbjct: 1580 KKEQKDIAKIVGSTDKEAKQHIFQALQYMRRLCNSPALVVKENHKRYDEIQKSLAGKNSH 1639

Query: 52   -----HDEKIKALEVIIEKA-------------------NAAPIIVAYHFNSDLAR---- 83
                 H  K+ AL  ++                      +    +V       L      
Sbjct: 1640 IRDVAHAPKLTALRDLLVDCGIGVDPSTEGELDTGASYVSPHRALVFCQMKEMLDIVQND 1699

Query: 84   ---------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                                 K    + ++N +    +L    +  G GLNL  G + ++
Sbjct: 1700 VLKKLLPSVQYLRLDGSVEATKRQNIVNQFNTDPSYDVLLLTTSVGGLGLNLT-GADTVI 1758

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+ ++     +   + R  + G K+ V VY LI + T++E +L   R K  +   
Sbjct: 1759 FVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVAST 1813

Query: 194  LLN 196
            ++N
Sbjct: 1814 VVN 1816


>gi|202029075|gb|ACH95308.1| LP03212p [Drosophila melanogaster]
          Length = 2642

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
               + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 1095 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 1154

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1155 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 1213

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 1214 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 1267


>gi|192807318|ref|NP_001122319.1| transcription activator BRG1 isoform E [Homo sapiens]
 gi|119604573|gb|EAW84167.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4, isoform CRA_f [Homo
            sapiens]
 gi|167888968|gb|ACA09753.1| SMARCA4 isoform 1 [Homo sapiens]
          Length = 1614

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|291463269|ref|NP_001167549.1| transcription activator BRG1 isoform 1 [Mus musculus]
 gi|74144347|dbj|BAE36034.1| unnamed protein product [Mus musculus]
          Length = 1617

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|81914599|sp|Q8K1P7|SMCA4_RAT RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|22095171|emb|CAD43278.1| brahma-related protein 1 [Rattus norvegicus]
          Length = 1613

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|225441914|ref|XP_002278785.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1563

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
             L  ++  E   +  +   T K     +       +         K++ L++++++  A 
Sbjct: 1171 HLIQEIDSELPVSKPALQLTYKI--FGSSPPMQSFDPAKLLTDSGKLQTLDILLKRLRAE 1228

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHP 116
               +++       L  L+                 T+      ++++     I +     
Sbjct: 1229 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRSDIFVFLLST 1288

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++F+   W+        +   + R  + G  + V VY LI + T+
Sbjct: 1289 RAGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETV 1342

Query: 177  DELVLQRLRTKSTIQDLLL 195
            +E +LQR   KST+Q L++
Sbjct: 1343 EEKILQRASQKSTVQQLVM 1361


>gi|189238349|ref|XP_967988.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
           protein [Tribolium castaneum]
          Length = 713

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 43/219 (19%)

Query: 15  LQGENIEA-FNSASKTVKCLQLANGAVYYDE---------------------EKHWKEVH 52
           L    ++A  ++ +      +L N      +                     +K      
Sbjct: 382 LNDVEVKASLSALASITTLKKLCNHPDLIMDKILEGGEGFEKSRHLLPPNYNDKDVMPQL 441

Query: 53  DEKIK---ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
             K+         ++      +++  ++   L   +K   +            ++ K   
Sbjct: 442 SGKLMLLDCFLANLKNNYNDKVVLVSNYTQTLDLFEKLCRKRGYRYVRLDGTMSIKKRAK 501

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N+ +    +      + G GLNL  G N L+ F   W+        +   + R  
Sbjct: 502 VVANFNDPESGEFIFMLSSKAGGCGLNL-IGANRLIMFDPDWNPAN-----DDQAMARVW 555

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G ++  ++Y  +A  TI+E + QR   K  +   +++
Sbjct: 556 RDGQQKPCYIYRFLAAGTIEEKIFQRQAHKKALSSTVVD 594


>gi|302841324|ref|XP_002952207.1| hypothetical protein VOLCADRAFT_81789 [Volvox carteri f.
           nagariensis]
 gi|300262472|gb|EFJ46678.1| hypothetical protein VOLCADRAFT_81789 [Volvox carteri f.
           nagariensis]
          Length = 755

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 63/191 (32%), Gaps = 29/191 (15%)

Query: 28  KTVKCLQLANGAVY---------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH 76
             ++  ++ N                          K+  L+ ++++       +++   
Sbjct: 449 LIMQMRKVCNHPDLITGRASGEICYPPAAELVAECGKLALLDRLLKELRKGGHRVLIFSQ 508

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
               L  ++                    +    I E+  G     +      + G G+N
Sbjct: 509 MTEMLNVIEAYLQDLGIQPLRIDGSVHWQQRRNDIAEFQSGNSDKWVFLLSTRAGGLGIN 568

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+  +     +   + R  + G  + V V+ L+  N+++  +L + 
Sbjct: 569 LTA-ADTVIIYDSDWNPHQ-----DAQAMDRCHRIGQTKPVLVFRLVTSNSVENRMLAKA 622

Query: 185 RTKSTIQDLLL 195
            +K  ++ +++
Sbjct: 623 ESKKALERIVI 633


>gi|192807314|ref|NP_001122317.1| transcription activator BRG1 isoform C [Homo sapiens]
 gi|167888964|gb|ACA09751.1| SMARCA4 isoform 2 [Homo sapiens]
          Length = 1617

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|192807320|ref|NP_001122320.1| transcription activator BRG1 isoform F [Homo sapiens]
 gi|167888962|gb|ACA09750.1| SMARCA4 isoform 3 [Homo sapiens]
          Length = 1613

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|119177637|ref|XP_001240571.1| hypothetical protein CIMG_07734 [Coccidioides immitis RS]
          Length = 1665

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ +        ++      
Sbjct: 1321 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRQLQAGGHRALIFTQMTK 1364

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N + +I +      S G G+NL  G
Sbjct: 1365 MLDILEQFLNVHGHRYLRLDGATKIEQRQMLTERFNNDPRILVFILSSRSGGLGINLT-G 1423

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1424 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1478

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1479 MLDDVVIQEGE 1489


>gi|73986598|ref|XP_867683.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 3
            [Canis familiaris]
 gi|73986644|ref|XP_867874.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 24
            [Canis familiaris]
          Length = 1614

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|291463271|ref|NP_001167550.1| transcription activator BRG1 isoform 3 [Mus musculus]
 gi|123790047|sp|Q3TKT4|SMCA4_MOUSE RecName: Full=Transcription activator BRG1; AltName:
            Full=ATP-dependent helicase SMARCA4; AltName:
            Full=BRG1-associated factor 190A; Short=BAF190A; AltName:
            Full=Protein brahma homolog 1; AltName: Full=SNF2-beta;
            AltName: Full=SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            4
 gi|74184874|dbj|BAE39059.1| unnamed protein product [Mus musculus]
          Length = 1613

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|47227437|emb|CAG04585.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2248

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 72/252 (28%), Gaps = 58/252 (23%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYD-------- 43
            M++Y   + + Y  +  +N EA NS          +  +   +  N    +         
Sbjct: 901  MQKYDTLETKYYKHILTKNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPAASMEAQK 960

Query: 44   -----EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                  E         K+  L+ ++ K       ++V       L  L+          +
Sbjct: 961  TPTGAYEGSALTKASGKLMLLQKMLRKLKEQGHRVLVFSQMTKMLDLLEDFLDHEGYKYE 1020

Query: 97   D----------PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE- 143
                          I  +N              + G G+NL    + ++ F   W+    
Sbjct: 1021 RIDGGITGALRQEAIDRFNAPGACQFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPHND 1079

Query: 144  --------------------HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                                 +  +     +R  + G    V +Y  + + +++E + Q 
Sbjct: 1080 IQVAVGSAGRGAARCGADLNRRPSLPAQAFSRAHRIGQANKVMIYRFVTRASVEERITQV 1139

Query: 184  LRTKSTIQDLLL 195
             + K  +  L++
Sbjct: 1140 AKRKMMLTHLVV 1151


>gi|192807316|ref|NP_001122318.1| transcription activator BRG1 isoform D [Homo sapiens]
 gi|167888966|gb|ACA09752.1| SMARCA4 isoform 4 [Homo sapiens]
 gi|307685613|dbj|BAJ20737.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [synthetic construct]
          Length = 1616

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1007 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1066

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1067 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1126

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1127 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1182

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1183 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1231


>gi|323138387|ref|ZP_08073457.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
 gi|322396334|gb|EFX98865.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
          Length = 828

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 21/200 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            L  ++      A + ++   ++  + Y  +++    V  +++ AL   +     A  +V
Sbjct: 494 FLADKDQRRLTCALQNMR---MSCNSTYLLDQQTDHGVKADELAALFEDLFAEPEAKAVV 550

Query: 74  AYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
              +                   +F  G   DK P  ++ + +     +      +   G
Sbjct: 551 FSQWTRTHDIIIRRLEMRKLGYVSFHGGVPSDKRPELVERFRDDPACRVFL-STDAGSTG 609

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+  + LV   L W+    +Q I RI      + G  R V V   +A+ TI+E +L 
Sbjct: 610 LNLQH-ASTLVNMDLPWNPAILEQRIARI-----HRMGQIRPVRVINFVAKGTIEEGMLS 663

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K ++   +L+    E 
Sbjct: 664 VLAFKRSLSAGILDGGTGEI 683


>gi|156357062|ref|XP_001624043.1| predicted protein [Nematostella vectensis]
 gi|156210795|gb|EDO31943.1| predicted protein [Nematostella vectensis]
          Length = 863

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 30/218 (13%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVH 52
           K Y     +        G +    N  S      +  N    +D                
Sbjct: 260 KYYKAILMKDYDIFSTDGPSRNKLN--SILTNLRKCVNHPYLFDGVEPEPFALGEHLITA 317

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K+ A++ ++         +++       L  +Q                   ++    
Sbjct: 318 SGKLHAIDQLLSYLYKRGHKVLMFSQMTRMLDIVQDYLGYRGYAYERLDGSVRGEERYIA 377

Query: 101 IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+ +NE +   +      + G GLNL    + ++F    ++ +      +     R  + 
Sbjct: 378 IKNFNEEQDNFIFLLSTKAGGQGLNLMS-ADTVIFVDSDYNPQN-----DLQAAARAHRI 431

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V +  L+ +NT++E++L+    K  + + ++  
Sbjct: 432 GQTRPVKIIRLVGRNTVEEIILKHADDKMRLTNNVIEG 469


>gi|312383001|gb|EFR28245.1| hypothetical protein AND_04056 [Anopheles darlingi]
          Length = 1726

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
              K + L+ ++ +  A+   +++   F   L  +++     +                 
Sbjct: 578 SSGKFRKLDELLPQLKADGHRVLIFSQFTMMLDIMERYLKIRKHGYLRLDGSTAVTDRQE 637

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++  +  + +      + G G+NL    + ++   + ++        ++    R  +
Sbjct: 638 LIDQYTSDPNLFVFLLSTKAGGLGINLTA-ADTVIIHDIDFNP-----YNDKQAEDRAHR 691

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+ V +Y  I++ +I+E +++  + K  ++  +  
Sbjct: 692 MGQKKPVTIYKFISEGSIEEGMMEIAQQKLQLEKDVTE 729


>gi|308475524|ref|XP_003099980.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
 gi|308266032|gb|EFP09985.1| hypothetical protein CRE_20884 [Caenorhabditis remanei]
          Length = 1429

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 35/225 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
            Y   ++ L  D    +  A + ++  V   +L N    ++  +     H          
Sbjct: 740 IYRHMKKGLLLD-AKMSSGARSLSNTIVHLRKLCNHPFLFETIEDSCRTHWKVNEVSGKD 798

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K++ L+ I+ K       +++ +     +   +                   D+
Sbjct: 799 LMRVAGKLELLDRILPKLKATGHRVLMFFQMTKMMDIFEDYLHFRNHTYLRLDGSTKPDE 858

Query: 97  DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 859 RGELLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 912

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 913 RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 957


>gi|73999360|ref|XP_850491.1| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) isoform 8 [Canis familiaris]
          Length = 912

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           ++ Y K    +         +             +L N           KE         
Sbjct: 557 IELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIKEKECSSTWDGKE 616

Query: 54  --------------------------EKIKALEVIIEKANA----APIIVAYHFNSDLAR 83
                                      K++ L  ++   +       +++  ++   L  
Sbjct: 617 EKSLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDI 676

Query: 84  -LQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
             +     G T  +             +  +N       +      + G GLNL  GG+ 
Sbjct: 677 LQEVCKRHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 735

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 736 LILYDIDWNPAT-----DIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLS 790

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 791 GAVVDLTR 798


>gi|169607196|ref|XP_001797018.1| hypothetical protein SNOG_06654 [Phaeosphaeria nodorum SN15]
 gi|111065365|gb|EAT86485.1| hypothetical protein SNOG_06654 [Phaeosphaeria nodorum SN15]
          Length = 1201

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 18/171 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
              E          KI+ L  I+ ++     +IV   F S L  ++    +          
Sbjct: 964  DPEYDASDLTPSTKIRQLLSILEKETPDHKVIVFSQFTSMLDLIEPFLRRQGYNFTRYDG 1023

Query: 91   -GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              R   ++    +   + +  +L         GLNL    + +V    +W+       +E
Sbjct: 1024 SMRNDLREASLHKLREDKRTRVLLCSLKCGSLGLNLTA-ASRVVIMEPFWNP-----FVE 1077

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + R  +      V VY L   N+++E +L+    K  + +  L   K 
Sbjct: 1078 EQAIDRVHRLNQTVDVTVYRLSIHNSVEERILELQEAKRKLANAALEGGKA 1128



 Score = 38.2 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 4/40 (10%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGA 39
           Y +        L     G   +   +    ++  Q  N  
Sbjct: 670 YDRLSDRAQSRLDEMMGGAKQDYIGALVLLLRLRQACNHP 709


>gi|73986624|ref|XP_867800.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 16
            [Canis familiaris]
          Length = 1594

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 988  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1047

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1048 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1107

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1108 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1163

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1164 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1212


>gi|328864923|gb|EGG13309.1| DEAD-box RNA helicase [Dictyostelium fasciculatum]
          Length = 1558

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQ 102
            D  +  L+ +  K + A  +V   + S L  ++    Q               +    I+
Sbjct: 1394 DSLMSELDKVHRKDSDAKSLVFSQWTSMLDLIEIPLQQAGIGYVRLDGKLAQKQREANIK 1453

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++  EG I +      + G GLNL    + +     WW+    +Q I+R+      + G 
Sbjct: 1454 KFKEEGSIKVFLISMKAGGLGLNL-VVASHVFLLDPWWNPATEEQAIDRV-----YRIGQ 1507

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + V V   + +N+I+E +L+  + K  +    L  +KK+ 
Sbjct: 1508 NKNVNVTRFVIKNSIEERILKLQQNKKNLAQDTLQ-MKKQI 1547



 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/146 (8%), Positives = 38/146 (26%), Gaps = 6/146 (4%)

Query: 2    KQYHKF----QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            + Y +     +R+     +   +     +     ++  Q+ +               D++
Sbjct: 1105 QIYKQLWNASKRKFINYYKNGTLMKNYAHILELLLRLRQVCDHPSLIKNIMQKNLFDDDE 1164

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
             K++           ++ + ++       +K         +D   I        P L + 
Sbjct: 1165 QKSIIDDANHQLVLEMLKSENYILPTEIGEKLKTIFGKDIEDQECILCMESLDNPCLTSC 1224

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDL 141
                 HG   ++           +  
Sbjct: 1225 GHIFCHGCITKHFEENGSITDQNYLP 1250


>gi|226292087|gb|EEH47507.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1083

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQK-----------AFP 89
            DE +    +   KI+ L  I++K +     IV   F S L +++               
Sbjct: 824 DDEPETPDHLASTKIRHLMKILKKESGDYKFIVFSFFTSMLTKIEPFLKGANIGYARYDG 883

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             R   ++    +     K  +L     +   GLNL    + +V    +W+       +E
Sbjct: 884 AMRNDMRENSLDRLRTSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVE 937

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + R  +      V VY L  +NT++E ++     K  + +  +  
Sbjct: 938 EQAIDRVHRLNQTIDVKVYKLTIRNTVEERIVDLQEHKRELANATIEG 985



 Score = 38.2 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   + G +I   ++    ++  Q  N     
Sbjct: 569 YSRLEQRTDKTLERMIGGNSINYASALVLLLRLRQACNHPDLV 611


>gi|126322839|ref|XP_001362962.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
            dependent regulator of chromatin, subfamily a, member 4,
            isoform 2 [Monodelphis domestica]
          Length = 1612

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1006 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1065

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1066 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1125

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1126 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1181

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1182 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1230


>gi|312212592|emb|CBX92675.1| similar to chromodomain helicase (Chd1) [Leptosphaeria maculans]
          Length = 1610

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y       Y  L +G      +  +  ++  + +N A+ +               E 
Sbjct: 714 LEYYKNILTRNYEALNEGGAGHKQSLLNIVMELKKASNHALLFPNAEAKFIRGDATKDET 773

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRT 93
                    K+  L+ ++ K  A+   +++       L              +       
Sbjct: 774 LKALITTSGKMMLLDRLLGKLKADGHRVLIFSQMVHMLDILTDYLKLRNYPFQRLDGTVP 833

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    I  +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 834 AAERKIAIDHFNAPGSDDYCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQ 887

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 888 AMARAHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 926


>gi|307210254|gb|EFN86904.1| Chromodomain-helicase-DNA-binding protein 1 [Harpegnathos saltator]
          Length = 1825

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 71/222 (31%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y   ++       G         +  ++  +  N A      ++ ++  +E       
Sbjct: 701 KNYSALRK-------GTKGSTMTFLNIVIELKKCCNHAFLTKPTEYERKDSNEDYLQQLI 753

Query: 61  ------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                       ++  +     +++       L  + +   +     +            
Sbjct: 754 RGSGKLVLLDKLLVRLREKGHRVLIFSQMVRMLDIIGEYLQKKHFPFQRLDGSIKGELRK 813

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 814 QALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 867

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 868 HRIGQKNQVNIYRLVTKNSVEEEIVERAKQKMVLDHLVIQRM 909


>gi|302913005|ref|XP_003050823.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
            77-13-4]
 gi|256731761|gb|EEU45110.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
            77-13-4]
          Length = 1514

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 33/215 (15%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVI 62
             +  +   + N  +  ++  +       Y E    ++               K+  L+V+
Sbjct: 1035 KMNKKERGSLN--NILMQLRKCLCHPFMYSEAIEERDHDPTVLQRNLVEASAKLLLLQVM 1092

Query: 63   IEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP 110
            + K       +++   F + L  ++          +              I  +N    P
Sbjct: 1093 LPKLQEKGHRVLIFSQFLNQLDIIEDFLGGLGYDYRRLDGSIGSLEKQRRIDAFNAPGSP 1152

Query: 111  LL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +        + G G+NL    + ++     ++  +     +   ++R  + G K+ V  +
Sbjct: 1153 IFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVLCF 1206

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             L+  ++++E ++Q  + K  +   L+ ++  + +
Sbjct: 1207 QLMTVDSVEERIMQIGKKKMALDHALIESMDDDEL 1241


>gi|158301559|ref|XP_321235.4| AGAP001820-PA [Anopheles gambiae str. PEST]
 gi|157012531|gb|EAA01172.5| AGAP001820-PA [Anopheles gambiae str. PEST]
          Length = 1987

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 60/255 (23%)

Query: 2    KQYHKFQR---------ELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHW 48
            + Y  F R         E   ++ G+      +  +          + N         H 
Sbjct: 1660 RLYEDFSRMHLHSSDIRECLENIDGQMAGPANKKTHVFQALRYLQNVCNHPKLVLSPSHP 1719

Query: 49   KE-----------------VHDEKIKALEVIIEKA----------NAAPIIVAYHFNSDL 81
            +                   H  K+  L+ ++             N    ++     + L
Sbjct: 1720 EYQMIVGEFTRNGSSMDDIEHSAKLPVLKQLLLDCGIGTNEDVSVNQHRALIFCQLKAML 1779

Query: 82   ARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              ++                            + ++N +  I +L       G GLNL  
Sbjct: 1780 DIVENDLLKKHLPAVSYLRLDGSVPPSTRHHIVTKFNGDPSIDVLLLTTQVGGLGLNLT- 1838

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+      M +   + R  + G K+ V VY LI + +++E ++   + K
Sbjct: 1839 GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRKSLEEKIMGLQKFK 1893

Query: 188  STIQDLLLNALKKET 202
                + +++      
Sbjct: 1894 LLTANTVVSDENASM 1908


>gi|73997428|ref|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 16 [Canis familiaris]
          Length = 1756

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|73997424|ref|XP_867839.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 14 [Canis familiaris]
          Length = 1779

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 851  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 910

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 911  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 970

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 971  MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1024

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1025 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1066


>gi|5917754|gb|AAD56022.1|AF181825_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
          Length = 918

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 345 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDGNEFYNKQEALQH 404

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 405 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 464

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 465 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 518

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 519 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 562


>gi|297739617|emb|CBI29799.3| unnamed protein product [Vitis vinifera]
          Length = 1557

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--AN 67
             L  ++  E   +  +   T K     +       +         K++ L++++++  A 
Sbjct: 1171 HLIQEIDSELPVSKPALQLTYKI--FGSSPPMQSFDPAKLLTDSGKLQTLDILLKRLRAE 1228

Query: 68   AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHP 116
               +++       L  L+                 T+      ++++     I +     
Sbjct: 1229 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRSDIFVFLLST 1288

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    + ++F+   W+        +   + R  + G  + V VY LI + T+
Sbjct: 1289 RAGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETV 1342

Query: 177  DELVLQRLRTKSTIQDLLL 195
            +E +LQR   KST+Q L++
Sbjct: 1343 EEKILQRASQKSTVQQLVM 1361


>gi|73986620|ref|XP_867786.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 14
            [Canis familiaris]
          Length = 1605

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 998  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1057

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1058 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1117

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1118 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1173

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1174 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1222


>gi|308160724|gb|EFO63198.1| Transcriptional activator, putative [Giardia lamblia P15]
          Length = 1860

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 19/164 (11%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                K+ AL+ ++        P+++       L  L+               G  ++K  
Sbjct: 1664 KDSGKLTALDKLLHTLYKTREPVLIYCQMTKMLDLLEDYLVFRRYNYVRLDGGDAVNKRG 1723

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++ +  +  I +      +   GLNL    + ++F+   W+  +     +   + R  
Sbjct: 1724 QIVERFMTDDTIFVFLLSTRAASLGLNLTR-ASTVIFYENDWNPTQ-----DAQAMDRVH 1777

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G K++V +Y L+ + +IDE +L++ R+K  +Q+L+L   +++
Sbjct: 1778 RLGQKKSVVIYRLVTEGSIDEKILEKARSKEIVQELVLRGQRRD 1821


>gi|60360510|dbj|BAD90499.1| mKIAA4075 protein [Mus musculus]
          Length = 1945

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 1005 KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1064

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1065 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1124

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1125 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1178

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1179 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1220


>gi|24047226|gb|AAH38596.1| CHD4 protein [Homo sapiens]
 gi|167773199|gb|ABZ92034.1| chromodomain helicase DNA binding protein 4 [synthetic construct]
          Length = 1937

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 981  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1040

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1041 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1100

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1101 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1154

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1155 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1196


>gi|212546089|ref|XP_002153198.1| SNF2 family helicase/ATPase (Swr1), putative [Penicillium marneffei
            ATCC 18224]
 gi|210064718|gb|EEA18813.1| SNF2 family helicase/ATPase (Swr1), putative [Penicillium marneffei
            ATCC 18224]
          Length = 1644

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 35/189 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ +        ++      
Sbjct: 1320 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRELQAGGHRALIFTQMTK 1363

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYG 128
             L  L++                   +       +N    I        S G G+NL  G
Sbjct: 1364 MLDILEQFLNIHGHRYLRLDGTTKVEQRQMLTDRFNNDNRILAFILSTRSGGLGINLT-G 1422

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1423 ADCVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEFTIESNILRKANQKR 1477

Query: 189  TIQDLLLNA 197
             + D+++  
Sbjct: 1478 MLDDVVIQE 1486


>gi|169146018|emb|CAQ13521.1| novel protein similar to vertebrate chromodomain helicase DNA binding
            protein family [Danio rerio]
          Length = 2230

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 69/234 (29%), Gaps = 43/234 (18%)

Query: 2    KQYHKFQRELYCDLQGE---NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y       +  L      N    N  +  ++  +  N        +            
Sbjct: 814  KYYRAILERNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYD 873

Query: 52   -------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                            K+  L+ ++   KA    +++       L  L+      R L +
Sbjct: 874  PLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYE 933

Query: 97   D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +++      +      + G G+NL      +  F   W+ +  
Sbjct: 934  RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCV-IFDSDWNPQN- 991

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                +     R  + G  +AV VY LI +N+ +  +L +   K  +   +L ++
Sbjct: 992  ----DLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSM 1041


>gi|73997442|ref|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 22 [Canis familiaris]
          Length = 1933

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|293347058|ref|XP_001063352.2| PREDICTED: chromodomain helicase DNA binding protein 4 [Rattus
            norvegicus]
          Length = 1928

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|18043584|gb|AAH20056.1| Hells protein [Mus musculus]
          Length = 275

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       ++V   
Sbjct: 1   MMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQ 60

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    I  +N +  + L      + G G+NL
Sbjct: 61  MTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINL 120

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R  
Sbjct: 121 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 174

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 175 AKRKLEKLIIH 185


>gi|328786333|ref|XP_001120496.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Apis
           mellifera]
          Length = 1667

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y+  ++       G         +  ++  +  N A      ++ ++ ++E       
Sbjct: 602 KNYNALRK-------GVKGSTMTFLNIVIELKKCCNHAFLTKPTENERKDNNEDYLQQLI 654

Query: 61  ------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                       ++  +     +++       L  L +   +     +            
Sbjct: 655 RGSGKLVLLDKLLVRLRETGHRVLIFSQMVRMLDILGEYLQKKHFPFQRLDGSIKGELRK 714

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 715 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 768

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 769 HRIGQKNQVNIYRLVTKNSVEEEIVERAKQKMVLDHLVIQRM 810


>gi|222623475|gb|EEE57607.1| hypothetical protein OsJ_07989 [Oryza sativa Japonica Group]
          Length = 2104

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------- 89
            Y  ++   +    K++ L +++   K+     ++       L  L++             
Sbjct: 1127 YFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLD 1186

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 ++    +Q +N   K  L      S G G+NL  G + ++F+   W+       +
Sbjct: 1187 GSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----M 1240

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1241 DQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1288


>gi|50302399|ref|XP_451134.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640265|emb|CAH02722.1| KLLA0A03069p [Kluyveromyces lactis]
          Length = 895

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 51/245 (20%)

Query: 3   QYHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGA---------------------- 39
            Y  F +      +   +              +L N                        
Sbjct: 577 LYQHFIESRAVKKIVKGDSNQP--LKAIGLLKKLCNHPDLLELSEDIPGSEELIPDDYQS 634

Query: 40  ----VYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR 92
                        +     K   L   + K    +   I++  ++   L  ++K      
Sbjct: 635 SVDSRTSRNRSVIQTAFSSKFSVLARFLYKIKTESNDKIVLISNYTQTLDLIEKMCFSNH 694

Query: 93  ----------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      ++K    +  +N+ +    +      + G G+NL  G N L+     W+
Sbjct: 695 YGVLRLDGTMNINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILLDPDWN 753

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               Q       + R  + G K+  F+Y  I+  TI+E + QR   K ++   +++  K+
Sbjct: 754 PAADQ-----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDE-KE 807

Query: 201 ETIHV 205
           +   +
Sbjct: 808 DVERL 812


>gi|119173620|ref|XP_001239222.1| hypothetical protein CIMG_10244 [Coccidioides immitis RS]
          Length = 970

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 53  DEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------- 97
             KI     I+ +     N    I+   F + L  L+    +     +            
Sbjct: 792 SSKIDKALEILREIESCNNGEKTIIFSQFTTLLDLLEVPIMREGWHYRRYDGSMSPIQRN 851

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++  +     ++     +   GLNL    + ++ F  +W+       IE   + R  
Sbjct: 852 EAVLEFSDNENCKIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQAIDRAH 905

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + G  R V V+ ++ ++T+++ +L+    K  + +  L+    + +
Sbjct: 906 RIGQIRPVMVHRILVRDTVEDRILELQEKKRELIENALDERASQNL 951



 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 6/55 (10%)

Query: 4   YHKFQRELYCD----LQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           Y   +++        L    +     N     ++  Q                V+
Sbjct: 545 YQSLEQKTQNQFNRYLDNGTVGKHYSNVLVMLLRLRQACCHPHLIQLFSDDSHVN 599


>gi|33440456|gb|AAH56199.1| Smarca2 protein [Mus musculus]
          Length = 985

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 390 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 449

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 450 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 509

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 510 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 565

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 566 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 614


>gi|327351880|gb|EGE80737.1| chromodomain helicase hrp3 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1549

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 713 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 772

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 773 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 832

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 833 AGPRRLSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 886

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 887 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 925


>gi|308163064|gb|EFO65427.1| DNA repair and recombination protein Rhp26p [Giardia lamblia P15]
          Length = 930

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 38/226 (16%)

Query: 2   KQYHKFQ--RELYCDLQ---------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           K Y +     E    L+         G  I      +K ++   + +             
Sbjct: 476 KLYIQLLSSDETITKLKQLSATSRSFGGGITKLT-MAKLIQLQHICDHPSLLSTASSDDS 534

Query: 51  V---HDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK-------------AFPQG 91
                  K+  L   +      +   ++V       L  +++                  
Sbjct: 535 ELCESSCKLTYLMEQLTTLWNQSHDKVLVFCQGRMMLNIVERIILETASFKNAYLRMDGN 594

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +D  P  I  +  + +I L        G GLNL    N +   +  W+       I+ 
Sbjct: 595 IPVDARPALISRFSTDPQIRLFLLTTRVGGLGLNLTA-ANHVFLLNPNWNPT-----IDD 648

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V R  +    + V VY +    TI+E +  R   K  +   +L+
Sbjct: 649 QSVERCWRITQSKKVIVYKVFTGGTIEEKIFNRQIYKRLLVSRVLD 694


>gi|296815930|ref|XP_002848302.1| chromodomain helicase hrp3 [Arthroderma otae CBS 113480]
 gi|238841327|gb|EEQ30989.1| chromodomain helicase hrp3 [Arthroderma otae CBS 113480]
          Length = 1524

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 715 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGAEDQAGGSTRREDQL 774

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 775 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 834

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 835 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 888

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 889 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 926


>gi|330796151|ref|XP_003286132.1| hypothetical protein DICPUDRAFT_150076 [Dictyostelium purpureum]
 gi|325083877|gb|EGC37318.1| hypothetical protein DICPUDRAFT_150076 [Dictyostelium purpureum]
          Length = 2186

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 36/228 (15%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVH----- 52
           K Y     + +  L+   +  +  +  +  ++  +  N        E     E+      
Sbjct: 740 KYYRAIYEKNFAFLRKNCKGQQGPSLLNIMMELRKCCNHPYLIKGVEHSETNEISEKDEV 799

Query: 53  -------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  ++ ++ K       +++     S L  L           +       
Sbjct: 800 YTKLIQASGKLVLVDKLLPKLKAGGHKVLIFSQMVSVLDILDDYLTFRGYPHERIDGSIK 859

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +++      +      + G G+NL    + ++ F   W+ +      +  
Sbjct: 860 GNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTA-ADTVIIFDSDWNPQN-----DLQ 913

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V VY L+ +NT + L+  R   K  +  ++L  + 
Sbjct: 914 AQARCHRIGQDKMVKVYRLVTKNTYERLMFDRASKKLGLDRVVLTKMN 961


>gi|299753319|ref|XP_001833199.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
 gi|298410246|gb|EAU88472.2| SNF2 family domain-containing protein [Coprinopsis cinerea
           okayama7#130]
          Length = 840

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP-- 110
           I       I++  ++   L                     ++ K    + ++N+      
Sbjct: 610 IHTQTNDKIVLISNYTQTLDLFEKLLRSKKYGYFRLDGTMSITKRQKLVDQFNDPNGKEF 669

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL  G N L+ F   W+    Q       + R  + G K+  FVY  
Sbjct: 670 IFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ-----QALARVWRDGQKKECFVYRF 723

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I+  TI+E + QR  +K  +   +++ 
Sbjct: 724 ISTGTIEEKIFQRQASKQALSSAVVDE 750


>gi|255728815|ref|XP_002549333.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
 gi|240133649|gb|EER33205.1| DNA repair and recombination protein RAD54 [Candida tropicalis
           MYA-3404]
          Length = 847

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 19/180 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----- 92
           G     E + W  V    ++     I+K     I++  ++   L  ++K     +     
Sbjct: 591 GGFRNSEVQTWFSVKFMILERFLHKIKKETNDKIVLISNYTQTLDLIEKMCRNKKYGVLR 650

Query: 93  -----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +++K    + ++N       +      + G G+NL  G N LV     W+    Q
Sbjct: 651 LDGTLSINKRQKLVDKFNNPDGSEFIFLLSSKAGGCGINL-IGANRLVLIDPDWNPASDQ 709

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                  + R  + G K+  F+Y  I+  TI+E + QR   K  +   +++  K++   +
Sbjct: 710 -----QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKLQLSSCVVDE-KEDVDRL 763


>gi|195428619|ref|XP_002062369.1| GK17504 [Drosophila willistoni]
 gi|194158454|gb|EDW73355.1| GK17504 [Drosophila willistoni]
          Length = 2023

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 42/226 (18%)

Query: 6    KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYDEE--------KHW 48
              Q++ Y  +  +N EA NS          +  +   +  N    +              
Sbjct: 993  AMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEALTSAGGL 1052

Query: 49   KEVHD-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
             E++       K+  L  ++++  +    +++       L  L+      +   +     
Sbjct: 1053 YEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGS 1112

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N       +      + G G+NL    + ++ +   W+        +
Sbjct: 1113 ITGAVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1166

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1167 IQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1212


>gi|71024321|ref|XP_762390.1| hypothetical protein UM06243.1 [Ustilago maydis 521]
 gi|46101890|gb|EAK87123.1| hypothetical protein UM06243.1 [Ustilago maydis 521]
          Length = 986

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
            + +              + +  L  I         IV   F S L  ++    +     
Sbjct: 797 TSHSQDLFASSSGSTKTRKMLSLLSQIRAADATEKTIVFSQFTSFLNIVEPHLQRHGFKY 856

Query: 92  ------RTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     +    ++   ++  + ++     +   GLNL    + ++   LWW+ +  
Sbjct: 857 VRYDGSMKPQERESALERIRSDASVTVILISFKAGSTGLNLTS-CSRVILMDLWWNPQ-- 913

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              IE     R  + G  R V +Y L  ++T++E +L+    K  +    L   K
Sbjct: 914 ---IEEQAFDRAHRLGQTRDVTIYKLSIKDTVEERILKLQEKKRALAKAALEGSK 965


>gi|30687235|ref|NP_197432.2| homeotic gene regulator, putative [Arabidopsis thaliana]
 gi|332005300|gb|AED92683.1| Homeotic gene regulator [Arabidopsis thaliana]
          Length = 1064

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 80/214 (37%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------DEEKHWKEVHDEKIK 57
           Y +        L   N ++ +  + T++  +  N    +        +K        K +
Sbjct: 639 YKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRASGKFE 698

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
            L+ ++ K       I++       +            +          D+    ++++N
Sbjct: 699 LLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFN 758

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E   P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 759 EPDSPYFMFLLSTRAGGLGLNLQT-ADTIIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 812

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 813 EVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQA 846


>gi|327299934|ref|XP_003234660.1| chromodomain helicase [Trichophyton rubrum CBS 118892]
 gi|326463554|gb|EGD89007.1| chromodomain helicase [Trichophyton rubrum CBS 118892]
          Length = 1558

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 743 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEEQAGGSTRREDQL 802

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 803 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 862

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 863 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 916

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 917 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 954


>gi|170594229|ref|XP_001901866.1| BRM protein [Brugia malayi]
 gi|158590810|gb|EDP29425.1| BRM protein, putative [Brugia malayi]
          Length = 1412

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------- 52
             Y   Q+ L  D +     A    +  V   +L N    ++  +                
Sbjct: 840  LYQHMQKGLLIDSKHAGGRAL--MNTVVHLRKLCNHPFLFENVEDECREFWKVPDVSGKD 897

Query: 53   ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K + L+ ++ K  A+   I++     S +  ++                   D+
Sbjct: 898  LYRVSGKFELLDRVLPKLKASGHRILMFCQMTSLMTIMEDYLNYREFKYLRLDGSTKPDE 957

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N       +      + G GLNLQ   + ++ F   W+  +           
Sbjct: 958  RGQLLELYNAPNSEYFIFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 1011

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  R V V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 1012 RAHRIGQSREVRVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 1056


>gi|5917756|gb|AAD56024.1|AF181827_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
          Length = 918

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 345 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 404

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 405 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 464

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 465 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 518

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 519 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 562


>gi|326471073|gb|EGD95082.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1050

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             KI+ L  ++++ +     IV   F S L +++     G               ++   
Sbjct: 809 SAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASL 868

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +L     +   GLNL    + +V    +W+       +E   + R  +  
Sbjct: 869 NRLRNSSGTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLN 922

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY L  + T++E +L+    K  +    +  
Sbjct: 923 QTIDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 959



 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 566 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 608


>gi|159125579|gb|EDP50696.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            fumigatus A1163]
          Length = 1509

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 67/198 (33%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDE-------------KIKALEVIIEKANAAPIIVAY 75
             ++  +       Y E    +  +               K+  + +   K     +++  
Sbjct: 953  LMQLRKCLCHPFVYSEAIEERTANSAASHKHLVEASGKLKLLEIMLPKLKQRGHRVLIFS 1012

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1013 QFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQKRIDEYNADNSPYFAFLLSTRSGGVGI 1072

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + +++E ++Q 
Sbjct: 1073 NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMTRGSVEEKIMQI 1126

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L++ +  E
Sbjct: 1127 GKKKMVLDHVLIDRMVAE 1144


>gi|310793696|gb|EFQ29157.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1569

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 34/218 (15%)

Query: 13   CDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKA 58
                 + I   +  S     ++  +       Y E    + +              K+  
Sbjct: 1090 AIFADDKINKRDRGSLNNILMQLRKCLCHPFMYSEAVEERSLDPVKIHQNLISASGKLML 1149

Query: 59   LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE 106
            L +++ K       +++   F   L  ++          +              I  +NE
Sbjct: 1150 LNIMLPKLKERGHRVLIFSQFLDQLDIMEDFLNGLGFQHRRLDGKINSLEKQKHIDAFNE 1209

Query: 107  GKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                +        + G G+NL    + ++     ++  +     +   ++R  + G K  
Sbjct: 1210 PGSEIFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQAISRAHRIGQKNK 1263

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            V  + L+ +N+ +E ++Q  R K  +  +L+ A+ +E 
Sbjct: 1264 VLCFQLMTKNSAEEKIMQIGRKKMALDHVLIEAMDEEG 1301


>gi|73997404|ref|XP_867762.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 4 [Canis familiaris]
          Length = 1949

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|47211143|emb|CAF96563.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1919

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 73/249 (29%), Gaps = 58/249 (23%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +             
Sbjct: 725 KQYYKWILTRNYKALSKGVKGSTSGFLNIMMELKKCCNHCYLVRPPEEDLNKSEALQQLV 784

Query: 53  --DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ +       +++       L  L       + L +            
Sbjct: 785 RSSGKLVLLDKLLIRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRK 844

Query: 99  CTIQEWNEGKIPL-----------------------------LFAHPASCGHGLNLQYGG 129
             +  +N     +                                   + G G+NL    
Sbjct: 845 QALDHFNAEGSEVRGHAGSAWPGSRSSLTAPAPLPLCLQDFCFLLSTRAGGLGINL-ASA 903

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + +V F   W+ +      +     R  + G KR V +Y L+ + +++E +++R + K  
Sbjct: 904 DTVVIFDSDWNPQN-----DLQAQARAHRIGQKRQVNIYRLVTKGSVEEDIIERAKKKMV 958

Query: 190 IQDLLLNAL 198
           +  L++  +
Sbjct: 959 LDHLVIQRM 967


>gi|326500828|dbj|BAJ95080.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1731

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 36/231 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            KQY+K   +R      +G      +  +  V+  +  N    ++   H         +  
Sbjct: 845  KQYYKWILERNFQNLNKGVRGNQVSLLNVVVELKKCCNHPFLFESADHGYGGDSIGDRNK 904

Query: 60   EVIIEKANA----------------APIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
               I  ++                   +++       L  L +         +       
Sbjct: 905  VERIVMSSGKLVLLDKLLLRLRETNHRVLIFSQMVRMLDILSEYLSLRGFQFQRLDGSTR 964

Query: 98   ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 965  ADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 1018

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1019 AMSRAHRIGQQDTVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEG 1069


>gi|292622418|ref|XP_685699.4| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 1
            [Danio rerio]
          Length = 1953

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 60/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            K Y       +  L         +  +  +   +  N    +                  
Sbjct: 994  KYYKYILTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGS 1053

Query: 52   ------HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                      +    +   K     +++       L  L+          +         
Sbjct: 1054 ALTKASGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGG 1113

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P  +      + G G+NL    + ++ +   W+        +    
Sbjct: 1114 MRQEAIDRFNAPGAPQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1167

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1168 SRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVV 1209


>gi|195116617|ref|XP_002002850.1| GI10771 [Drosophila mojavensis]
 gi|193913425|gb|EDW12292.1| GI10771 [Drosophila mojavensis]
          Length = 1908

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
            KQY+K    +      +G+        +  ++  +  N A      +             
Sbjct: 783  KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELFGLQQDEALQ 842

Query: 51   ---VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 843  VLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFSFQRLDGSIKGE 902

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 903  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 956

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 957  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1001


>gi|159470413|ref|XP_001693354.1| hypothetical protein CHLREDRAFT_117345 [Chlamydomonas reinhardtii]
 gi|158277612|gb|EDP03380.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 526

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFP------ 89
               +    +  H  K+  LE+++    +  +   +++  ++   L  L+          
Sbjct: 300 APVYKPGSCQAYHSGKVAVLEMMLKAVRDSGSGDKVVLVSNYTEALDILEGMCRAHAWAF 359

Query: 90  ----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG-GNILVFFSLWWDLEEH 144
                G  + K    +  +N+   P      +S   G+ L     N LV F   W+    
Sbjct: 360 LRLDGGCDVKKRQPLVDCFNDPAHPSFLLLLSSKAGGVGLNIIGANRLVLFDPDWNPAN- 418

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +   + R  + G K+ V++Y L+   +I+E V QR   K  +   +++
Sbjct: 419 ----DLQAMARVWRQGQKKKVWIYRLLTTGSIEEKVYQRQVAKQGLSAAIVD 466


>gi|297807991|ref|XP_002871879.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317716|gb|EFH48138.1| hypothetical protein ARALYDRAFT_488814 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1061

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 81/214 (37%), Gaps = 26/214 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIK 57
           Y +        L   N ++ +  + T++  +  N    +    +             K +
Sbjct: 638 YKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGKFE 697

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN 105
            L+ ++ K       I++       +  L+        +           +    ++++N
Sbjct: 698 LLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLTLNDYMYLRLDGTTKTDQRGVLLKQFN 757

Query: 106 EGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           E + P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K+
Sbjct: 758 EPESPYFMFLLSTRAGGLGLNLQT-ADTIIIFDSDWNPQ-----MDQQAEDRAHRIGQKK 811

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 812 EVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQA 845


>gi|270014262|gb|EFA10710.1| domino [Tribolium castaneum]
          Length = 2260

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              ++A+  V    +    +    K++ L+ ++ K  +    +++       L  L+    
Sbjct: 1443 LHRIASAMVTQFPDPRLIQYDCGKLQTLDKLLRKLKSEGHRVLIFTQMTKMLDVLEAFLN 1502

Query: 90   QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 1503 FHGHIYLRLDGTTKVDQRQLLMERFNGDTRIFAFILSTRSGGIGVNLT-GADTVIFYDSD 1561

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y L+++ TI+E +L++   K  + DL +  
Sbjct: 1562 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEENILKKANQKRLLGDLAIEG 1615


>gi|239613379|gb|EEQ90366.1| chromodomain helicase [Ajellomyces dermatitidis ER-3]
          Length = 1513

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 713 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 772

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 773 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 832

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 833 AGPRRLSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 886

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 887 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 925


>gi|73997440|ref|XP_853783.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 2 [Canis familiaris]
          Length = 1937

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 981  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1040

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1041 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1100

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1101 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1154

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1155 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1196


>gi|162312253|ref|NP_596080.2| TATA-binding protein associated factor Mot1 [Schizosaccharomyces
            pombe 972h-]
 gi|81170682|sp|O43065|MOT1_SCHPO RecName: Full=Probable helicase mot1; AltName: Full=Modifier of
            transcription 1; AltName: Full=TBP-associated factor mot1
 gi|157310435|emb|CAA21270.2| TATA-binding protein associated factor Mot1 [Schizosaccharomyces
            pombe]
          Length = 1953

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 60/246 (24%)

Query: 5    HKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
             + + +     QG   +  +  +         +L N       EKH K            
Sbjct: 1633 EELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAKEN 1692

Query: 51   ------VHDEKIKALEVIIEKA--------------------NAAPIIVAYHFNSDLARL 84
                   H  K+ AL  ++                       +   +++       L  +
Sbjct: 1693 SGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSEHRVLIFCQLKDMLDMV 1752

Query: 85   QKAFPQG--------------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            +K   Q                   +     +  N+  I +L       G GLNL  G +
Sbjct: 1753 EKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLT-GAD 1811

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++F    W+        +   + R  + G K+ V VY LI +  ++E ++   R K  +
Sbjct: 1812 TVIFVEHDWNPMR-----DLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNV 1866

Query: 191  QDLLLN 196
               ++N
Sbjct: 1867 ASTVVN 1872


>gi|119570419|gb|EAW50034.1| helicase, lymphoid-specific, isoform CRA_i [Homo sapiens]
          Length = 839

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEK---ANAAPIIVAY 75
            +   +  N     +                  +  K   L+ ++ +        +++  
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVVLLFS 623

Query: 76  HFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              S L  L                  +  +    +  +N + ++ +      + G G+N
Sbjct: 624 QMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGIN 683

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R 
Sbjct: 684 LTA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 737

Query: 185 RTKSTIQDLLLN 196
             K  ++ L+++
Sbjct: 738 AAKRKLEKLIIH 749


>gi|118367847|ref|XP_001017133.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89298900|gb|EAR96888.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2184

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 68/224 (30%), Gaps = 37/224 (16%)

Query: 3    QYHKF--QRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEK------------- 46
             Y     + +        ++    S +   ++  +  N      E +             
Sbjct: 1073 LYRAIYERNKSMLQKNFSSMAMNTSLNNLEMQLRKCCNHPFLIKEMEIELTQNFKTSEER 1132

Query: 47   -HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
                     K+  L+ +++K       I++   F   L  L++                 
Sbjct: 1133 YKCLVDTSGKMILLDKLVQKYKIEGKKILIFSQFVYMLNLLEEYLRYRQLKYEKIDGSVK 1192

Query: 94   LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    I  +N+      +      + G G+NL    NI++ F   W+ +      +  
Sbjct: 1193 SKERQNAIDRFNDPDKKRDVFLLSTKAGGLGINLTS-ANIVIIFDSDWNPQN-----DVQ 1246

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G K+ V VY  I + T +  + +R   K  +   + 
Sbjct: 1247 ATARAHRIGQKQEVMVYRFITKKTYEAEMFERATKKLGLDQAIF 1290


>gi|94733808|emb|CAK04334.1| novel protein similar to human chromodomain helicase DNA binding
           protein 2 (CHD2) [Danio rerio]
          Length = 1694

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 31/217 (14%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HDEK 55
             R      +G    +    +  ++  +  N A    + +  +                K
Sbjct: 728 LTRNFKALSKGTRGSSSGFLNIVMELKKCCNHAFLIKQPEDGENDAPQEHLQSLVRGGGK 787

Query: 56  IKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQE 103
           +  L+ ++   K     +++       L  L       R   +              +  
Sbjct: 788 LVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDH 847

Query: 104 WNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N              + G G+NL    + +V F   W+ +      +     R  + G 
Sbjct: 848 FNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARAHRIGQ 901

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 902 KKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRM 938


>gi|73999362|ref|XP_544181.2| PREDICTED: similar to DNA repair and recombination protein RAD54B
           (RAD54 homolog B) isoform 7 [Canis familiaris]
          Length = 892

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           ++ Y K    +         +             +L N           KE         
Sbjct: 537 IELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIKEKECSSTWDGKE 596

Query: 54  --------------------------EKIKALEVIIEKANA----APIIVAYHFNSDLAR 83
                                      K++ L  ++   +       +++  ++   L  
Sbjct: 597 EKSLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDI 656

Query: 84  -LQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
             +     G T  +             +  +N       +      + G GLNL  GG+ 
Sbjct: 657 LQEVCKRHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 715

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 716 LILYDIDWNPAT-----DIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLS 770

Query: 192 DLLLNALK 199
             +++  +
Sbjct: 771 GAVVDLTR 778


>gi|39204553|ref|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mus musculus]
 gi|51701319|sp|Q6PDQ2|CHD4_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
            Short=CHD-4
 gi|35193271|gb|AAH58578.1| Chromodomain helicase DNA binding protein 4 [Mus musculus]
          Length = 1915

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|85090195|ref|XP_958302.1| helicase SWR1 [Neurospora crassa OR74A]
 gi|74696276|sp|Q7S133|SWR1_NEUCR RecName: Full=Helicase swr-1
 gi|28919649|gb|EAA29066.1| helicase SWR1 [Neurospora crassa OR74A]
          Length = 1845

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ K        ++       L  L++ 
Sbjct: 1498 KRLLQYDCG----------------KLQALDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1541

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1542 LNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLT-GADTVIFYD 1600

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1601 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1655

Query: 197  ALK 199
              +
Sbjct: 1656 EGE 1658


>gi|326479756|gb|EGE03766.1| SNF2 family helicase [Trichophyton equinum CBS 127.97]
          Length = 1050

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             KI+ L  ++++ +     IV   F S L +++     G               ++   
Sbjct: 809 SAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASL 868

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +L     +   GLNL    + +V    +W+       +E   + R  +  
Sbjct: 869 NRLRNSSGTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLN 922

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY L  + T++E +L+    K  +    +  
Sbjct: 923 QTIDVKVYKLTIKGTVEERILELQERKRELAKSAIEG 959



 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 566 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 608


>gi|123495365|ref|XP_001326721.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121909640|gb|EAY14498.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1587

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 42/229 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           KFQ+++Y D+   N       +      ++  ++          +               
Sbjct: 461 KFQKQIYKDILESNARFLTKGAHCSNIAMELRKVCIHPYLVKGAEERILQDFPGANQNPS 520

Query: 53  ---------DEKIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQG 91
                      K+  ++ ++ K  ++   I++               +            
Sbjct: 521 ILLQAMIRASGKMILIDKLLPKLKSDGHRILIFSQMTNLLDILEDYLAMKGYQSCRIDGK 580

Query: 92  RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +K    I ++NE      +      + G G+NL    + ++ F   W+ +      +
Sbjct: 581 VKGEKRQGIIDKFNEPNSELFVCLLSTRAGGIGINL-NSADTVIIFDSDWNPQN-----D 634

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                R  + G  + V VY L+ + T ++ +      K  +   +L+ +
Sbjct: 635 LQAQARCHRIGQTKTVQVYRLLTKGTYEQTMFDSASRKLGLGHAILDKM 683


>gi|70993280|ref|XP_751487.1| chromatin remodeling complex subunit (Chd3) [Aspergillus fumigatus
            Af293]
 gi|66849121|gb|EAL89449.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            fumigatus Af293]
          Length = 1509

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 67/198 (33%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDE-------------KIKALEVIIEKANAAPIIVAY 75
             ++  +       Y E    +  +               K+  + +   K     +++  
Sbjct: 953  LMQLRKCLCHPFVYSEAIEERTANSAASHKHLVEASGKLKLLEIMLPKLKQRGHRVLIFS 1012

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1013 QFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQKRIDEYNADNSPYFAFLLSTRSGGVGI 1072

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + +++E ++Q 
Sbjct: 1073 NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMTRGSVEEKIMQI 1126

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L++ +  E
Sbjct: 1127 GKKKMVLDHVLIDRMVAE 1144


>gi|315053040|ref|XP_003175894.1| chromodomain helicase hrp3 [Arthroderma gypseum CBS 118893]
 gi|311341209|gb|EFR00412.1| chromodomain helicase hrp3 [Arthroderma gypseum CBS 118893]
          Length = 1559

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 743 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEDQAGGSTRREDQL 802

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 803 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 862

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 863 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 916

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 917 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 954


>gi|73986632|ref|XP_867832.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 20
            [Canis familiaris]
          Length = 1589

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 982  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1041

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1042 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1101

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1102 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1157

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1158 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1206


>gi|119495345|ref|XP_001264459.1| SNF2 family helicase/ATPase PasG, putative [Neosartorya fischeri
           NRRL 181]
 gi|119412621|gb|EAW22562.1| SNF2 family helicase/ATPase PasG, putative [Neosartorya fischeri
           NRRL 181]
          Length = 867

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 75/217 (34%), Gaps = 28/217 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L  + I      +  ++     N     Y+        +         K+
Sbjct: 568 EEIERANTIKLAKKEIAQKKMQNPVMQARLACNSPHNFYWPWSDDPAAIDETLVTASGKM 627

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQE 103
             L+ ++         I++   F + L  LQ    Q             +       I+ 
Sbjct: 628 LLLDRLVPCLLKKGHKILIFSQFKTQLDILQDWATQLRGWNCCRIDGAISQTDRQAQIKA 687

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +N +    +      + G G+NL    + ++ +   W+ ++     +     R  + G  
Sbjct: 688 FNSDTGYKIFLLSTRAGGQGINLVA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQT 741

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 742 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 778


>gi|294951977|ref|XP_002787191.1| hypothetical protein Pmar_PMAR025719 [Perkinsus marinus ATCC 50983]
 gi|239901899|gb|EER18987.1| hypothetical protein Pmar_PMAR025719 [Perkinsus marinus ATCC 50983]
          Length = 893

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
             ++   E    K++ L  ++   +      IV    +  L  ++ +             
Sbjct: 720 FPDRDMIERDCGKMRKLGELLTTLRDGGHKCIVFTQMSKMLDIIEASMNLHGFTYVRLDG 779

Query: 92  -RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + +    ++ +N   KI    A   + G G+NL  G + ++F+   W+       ++
Sbjct: 780 STPVLRRQLVVEAFNKSPKIFAFIASTRAGGVGINLT-GADCVIFYDSDWNPA-----MD 833

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + R  + G  R V ++ L++ +TI+E +  +   K  + D++++ 
Sbjct: 834 RQAMDRCHRIGQTRDVHIFRLLSHHTIEENIFHKQLQKRMLDDVVVDE 881


>gi|261194801|ref|XP_002623805.1| chromodomain helicase [Ajellomyces dermatitidis SLH14081]
 gi|239588343|gb|EEQ70986.1| chromodomain helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1513

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------------EE 45
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +               E 
Sbjct: 713 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFPNAESRILEGKTGREEM 772

Query: 46  KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 773 MRALITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVRMLDILADYMDVRGYAYQRLDGTIA 832

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N  +           + G G+NL    + +V F   W+ +      +  
Sbjct: 833 AGPRRLSIEHFNAPESNDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 886

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E VL+R R K  +
Sbjct: 887 AMARAHRIGQTRPVSVYRLVSKDTVEEEVLERARNKLLL 925


>gi|121701939|ref|XP_001269234.1| chromodomain helicase (Chd1), putative [Aspergillus clavatus NRRL
           1]
 gi|119397377|gb|EAW07808.1| chromodomain helicase (Chd1), putative [Aspergillus clavatus NRRL
           1]
          Length = 1506

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 678 LEYYKNILTKNYAALNDGAKGQKQSLLNIMMELKKASNHPFMFPNAEARILEGSTRREDI 737

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L      +G T  +      
Sbjct: 738 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYTYQRLDGTIP 797

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 798 AVSRRLAIEHFNAPDSSDFCFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 851

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 852 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 890


>gi|157108129|ref|XP_001650090.1| helicase [Aedes aegypti]
 gi|108879397|gb|EAT43622.1| helicase [Aedes aegypti]
          Length = 1455

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 74/230 (32%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 859  LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHIGGH 918

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K  A+   +++       +  ++              
Sbjct: 919  GTVSGPDLYRASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLD 978

Query: 91   -GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    ++++N    +  +      + G GLNLQ   + +V F   W+  +    
Sbjct: 979  GTTKAEERGDLLKKFNCKNSEYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1033

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1034 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1082


>gi|73986630|ref|XP_867824.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 19
            [Canis familiaris]
          Length = 1596

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 989  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1048

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1049 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1108

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1109 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1164

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1165 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1213


>gi|149049418|gb|EDM01872.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
 gi|149049420|gb|EDM01874.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
 gi|149049423|gb|EDM01877.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Rattus
           norvegicus]
          Length = 679

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 36  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 95

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 96  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 155

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 210 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 251


>gi|241074609|ref|XP_002408725.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215492547|gb|EEC02188.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1216

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 58/241 (24%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGA--------------------- 39
           K Y +  + E   ++    +   +   +     ++ +                       
Sbjct: 292 KIYREFLESEEVANIL---MTKKSPLVQLTILKKICDHPRLLSKRACVQMGMYDDMTQDQ 348

Query: 40  ---VYYDEEKHWKEVH----------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARL 84
                  EE +   +             K+  +  ++   K+     +        L  +
Sbjct: 349 IEEFLDKEEGNSMTISDVPDDTLLAESGKMTFVLELLLNLKSEGHRTLFFSQSRKILDII 408

Query: 85  QK------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           Q+                 +  ++D    Q        +        G GL L    + +
Sbjct: 409 QRILLNRGFRVTRLDGTITKLCERDRLVTQFQTRSLADIFLLTTQVGGVGLTLTS-ADRV 467

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V +   W+        +   V R  + G  + V VY L+  +T++E + +R   K +I  
Sbjct: 468 VIYDPSWNPAT-----DAQAVDRAYRIGQSKNVVVYRLVTCSTVEEKIYRRQIFKDSIIK 522

Query: 193 L 193
            
Sbjct: 523 Q 523


>gi|73997436|ref|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 20 [Canis familiaris]
          Length = 1850

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 922  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 981

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 982  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1041

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1042 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1095

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1096 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1137


>gi|259485512|tpe|CBF82596.1| TPA: Helicase swr1 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5ARK3] [Aspergillus
            nidulans FGSC A4]
          Length = 1698

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + V   F +  
Sbjct: 1357 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIH 1412

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N    I        S G G+NL  G + ++F+ L W+
Sbjct: 1413 GHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1471

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1472 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1525


>gi|300122089|emb|CBK22663.2| unnamed protein product [Blastocystis hominis]
          Length = 924

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            + LQ   G +          +   + +    ++    +  + +   F +          
Sbjct: 514 KRLLQYDCGKLEVLSAM----LPRLRQEGHRCLLFTQMSRMLDIFETFLNMHHFTYLRMD 569

Query: 90  QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L +    ++++N   ++ +      S G G+NL  G + ++F+   W+       +
Sbjct: 570 GSTPLPQRQKMMEKFNNDNQVFVFILSTRSGGLGINL-VGADTVIFYDSDWNPA-----M 623

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +     R  + G  R V +Y L++++T++E +L++   K  +  L L   +
Sbjct: 624 DAQAQDRAHRIGQTRDVHIYRLVSESTVEENILKKANQKRHLSQLSLEEGR 674


>gi|300121668|emb|CBK22243.2| unnamed protein product [Blastocystis hominis]
          Length = 912

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            + LQ   G +          +   + +    ++    +  + +   F +          
Sbjct: 514 KRLLQYDCGKLEVLSAM----LPRLRQEGHRCLLFTQMSRMLDIFETFLNMHHFTYLRMD 569

Query: 90  QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               L +    ++++N   ++ +      S G G+NL  G + ++F+   W+       +
Sbjct: 570 GSTPLPQRQKMMEKFNNDNQVFVFILSTRSGGLGINL-VGADTVIFYDSDWNPA-----M 623

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +     R  + G  R V +Y L++++T++E +L++   K  +  L L   +
Sbjct: 624 DAQAQDRAHRIGQTRDVHIYRLVSESTVEENILKKANQKRHLSQLSLEEGR 674


>gi|147817208|emb|CAN70867.1| hypothetical protein VITISV_027610 [Vitis vinifera]
          Length = 1177

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                          +    ++ +N+    ++        +   G+NL    N ++     
Sbjct: 976  CWRVYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINLHS-ANRVIIVDGS 1034

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            W+        +   + R  + G  + VF Y L+A  T++E + +R  TK  +   +++  
Sbjct: 1035 WNPT-----YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1089

Query: 199  -------KKETIHV 205
                   K+E +H+
Sbjct: 1090 QVHRTISKEEMLHL 1103


>gi|146165350|ref|XP_001014826.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|146145551|gb|EAR94494.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1612

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 83/225 (36%), Gaps = 34/225 (15%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            +K Y   +     D + +N   F+  +  +    + N    +  +K +            
Sbjct: 930  VKNYDNLK---LLDAKSKNFSKFSLLNILMSLRLVCNHPSLFLYKKKYLIPKKDKFQEEF 986

Query: 53   ---DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
                 K+K LE +I K       +++   F   L  + + F              ++   
Sbjct: 987  VDCSNKLKFLERMIPKLLQQNHKMLIFSQFTMMLDIMGEFFNFKGWAFERLDGTTSVIDR 1046

Query: 98   PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              TI  +N  + K  +      + G G+NL    + + F    ++        +   ++R
Sbjct: 1047 QKTIDSFNSKDSKAKIFLLSTRAGGLGINLTS-ADTIFFTDSDFNP-----YRDVQAISR 1100

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G +  V VY L+++ + +E +++    K  ++ +++N + K
Sbjct: 1101 AYRMGQESKVKVYRLVSKYSAEERIIEIATRKLLLESIIINPINK 1145


>gi|119495934|ref|XP_001264742.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
 gi|119412904|gb|EAW22845.1| chromodomain helicase (Chd1), putative [Neosartorya fischeri NRRL
           181]
          Length = 1523

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 864

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 865 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 903


>gi|331244822|ref|XP_003335050.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309314040|gb|EFP90631.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 958

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 75/207 (36%), Gaps = 33/207 (15%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEK- 65
               +   + ++  +  ++ N    +D     K               K+  L+ +++  
Sbjct: 653 KSKADGAENITQEEQLRKVCNHPWLFDWPIDPKTGEQLVGEGLVSASGKMLLLDRLLKGL 712

Query: 66  -ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK----I 109
                 ++V   F S L  +Q    +               +     ++E+NEG+     
Sbjct: 713 FDRGHKVLVFSQFTSMLDIIQDWATELKGWRVSRIDGVTRQESRREQMKEFNEGEGPDAC 772

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L      + G G+NL    + ++ F   W+ ++     +     R  + G  + V V+ 
Sbjct: 773 RLFLLSTRAGGVGINLVA-ADTVILFDSDWNPQQ-----DLQAQDRVHRIGQTKPVLVFR 826

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++ NTI+  +L++   K  ++ L++ 
Sbjct: 827 FVSGNTIESKMLEKAGQKRKLETLVIG 853


>gi|116181940|ref|XP_001220819.1| hypothetical protein CHGG_01598 [Chaetomium globosum CBS 148.51]
 gi|88185895|gb|EAQ93363.1| hypothetical protein CHGG_01598 [Chaetomium globosum CBS 148.51]
          Length = 843

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 78/230 (33%), Gaps = 37/230 (16%)

Query: 7   FQRELYCDLQGENIEAF-NSASKTV--KCLQLANGA--VYYDEEKHWKEVHDEKIKALEV 61
            +R    +L+   ++   N        +          +   +          K+KAL  
Sbjct: 611 MKRVSQAELKQPKLDHLTNELKALSDFELHLWCRDYKCIKGYDLPDDSWTDCAKVKALLE 670

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGK 108
           ++   +AN    +V   F   +  L +                        I E+N +  
Sbjct: 671 LVRKYQANGDRALVFTRFAKVIEILGECLASEGIEYLSLQGNTDVSARQELINEFNADES 730

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           IP+      S G G+NL    N ++ F    + ++     +     R  + G  R V + 
Sbjct: 731 IPVFLLTTGSGGTGINLTA-ANKVIIFDQSDNPQD-----DIQAENRAHRLGQTRPVEII 784

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL-------------NALKKETIHV 205
            LI++ T++ELV +    K  + + ++             +A+K + + +
Sbjct: 785 RLISEGTVEELVYKACEKKLELANKVVGWSTVEMTSGEMESAVKSQLLQL 834


>gi|302821505|ref|XP_002992415.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
 gi|300139831|gb|EFJ06565.1| hypothetical protein SELMODRAFT_162307 [Selaginella moellendorffii]
          Length = 1016

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY--------DEEKHWKE 50
           + QR  Y  L  ++I+A N+        +  ++  +  N    +                
Sbjct: 377 QMQRNYYKALLQKDIDAINTGGERRRLLNIAMQLRKCCNHPYLFQGAEPGPPYFTGEHLV 436

Query: 51  VHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
            +  K+  L+ ++ K       +++       L  L+               G + +   
Sbjct: 437 ENSGKMVLLDKLLPKLKQRSSRVLIFSQMTRLLDILEDYCIFRGYPSCRIDGGTSGEDRE 496

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N       +      + G G+NL    +I++ +   W+ +     ++     R 
Sbjct: 497 FAIEAFNREGSEKFIFLLSTRAGGLGINL-ATADIVILYDSDWNPQ-----VDLQAQDRA 550

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    Q TI+E V++R   K  +  L++   +
Sbjct: 551 HRIGQKKEVQVFRFCTQYTIEEKVIERAYKKLALDALVIQQGR 593


>gi|189241668|ref|XP_967398.2| PREDICTED: similar to brahma CG5942-PA, partial [Tribolium castaneum]
          Length = 1402

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 840  LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKYCDHVGIS 899

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++       +  ++             
Sbjct: 900  GGVISGPDLYRASGKFELLDRILPKLKVTGHRVLLFCQMTQLMTIMEDYLSWRGFGYLRL 959

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++N              + G GLNLQ   + ++ F   W+  +   
Sbjct: 960  DGTTKAEDRGDLLKKFNAKNSDYFLFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1015

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1016 --DLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1064


>gi|66359910|ref|XP_627133.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo
            domain [Cryptosporidium parvum Iowa II]
 gi|46228555|gb|EAK89425.1| brahma like protein with a HSA domain, SNF2 like helicase and a bromo
            domain [Cryptosporidium parvum Iowa II]
          Length = 1673

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 28/210 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-----EKIKALEV 61
             Q+ LY +L+       N     ++  ++ N    +  E  +           K   L+ 
Sbjct: 1010 LQQYLYKELESNENSGPNVL---MQLRKVCNHPFLFSTEIQYPSDESIVRVCGKFVMLDS 1066

Query: 62   IIEK--ANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            I+ K  A    +++             F S               +    +++ +N    
Sbjct: 1067 ILPKLRAAGHRVLIFSQMTKLLTLLEVFLSLRNMPFLRLDGTTLSEDRQESLKLFNAENS 1126

Query: 110  P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            P  +      + G G+NLQ   + ++ F   W+ +      +    +R  + G K+ V  
Sbjct: 1127 PYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQN-----DEQAQSRAHRIGQKKEVLT 1180

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +  +T++E ++     K     L++ +
Sbjct: 1181 LRFVTPDTVEERIMTTAGIKLDKDALIIKS 1210


>gi|251773066|gb|EES53622.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 824

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 75/188 (39%), Gaps = 18/188 (9%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            + +++ +++   + Y  + +    V  +++ AL   +        +V   +      + 
Sbjct: 498 LTCSLQNMRMVCNSTYLIDPETDHGVKADELVALLDGLFSDPGTKAVVFSQWTRTHDIVI 557

Query: 86  KA----------FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +           F  G   D+ P  ++ +  +    +      +   GLNLQ+  ++LV 
Sbjct: 558 RRLDARGIGSVSFHGGIPSDRRPALVERFREDPDCRVFL-STDAGSTGLNLQH-ASVLVN 615

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G KR V +   +A+  I+E +L  L  K ++ + +
Sbjct: 616 MDLPWNPAILEQRIARI-----HRMGQKRPVQIVNFVAKGGIEEGMLGLLSFKQSLSEGI 670

Query: 195 LNALKKET 202
           L+    E 
Sbjct: 671 LDGGAGEI 678


>gi|738309|prf||1924378A nucler protein GRB1
          Length = 1613

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1005 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1064

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++             
Sbjct: 1065 GGIVQGLDMYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYLAYRGFKYLRL 1124

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1125 AGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1180

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1181 --DLQAQDRAHRIGQRNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1229


>gi|196012568|ref|XP_002116146.1| hypothetical protein TRIADDRAFT_30634 [Trichoplax adhaerens]
 gi|190581101|gb|EDV21179.1| hypothetical protein TRIADDRAFT_30634 [Trichoplax adhaerens]
          Length = 701

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 42/233 (18%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y       +  L          N  +  ++  +  N     +  +             
Sbjct: 222 KFYRAILERNFNFLSKGANTSNLPNLMNTMMELRKCCNHPFLINGAEEKIVGEFTANNQV 281

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K       +++       L  L+      R   + 
Sbjct: 282 NGINAAIHAMIQASGKLVLIDKLLPKLKDGGHKVLIFSQMVRCLDILEDYLVYRRYQYER 341

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + + +    +      + G G+NL    + +V F   W+ +   
Sbjct: 342 IDGRVRGNLRQAAIDRFCKPESDRFVFLLCTRAGGLGINLTA-ADTVVIFDSDWNPQN-- 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +     R  + G  +AV VY LI QN+ +  +  R   K  +   +L ++
Sbjct: 399 ---DLQAQARCHRIGQSKAVKVYRLITQNSYEREMFDRASLKLGLDRAVLQSM 448


>gi|119492467|ref|XP_001263599.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119411759|gb|EAW21702.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1133

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 32   CLQLA-NGAVYYDEE--KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN-------- 78
            C QL  N      +   K+ + ++  K+  L  ++   + N    +V   F         
Sbjct: 925  CHQLCLNHPHSLGKFALKNDEWMNSGKVDKLCELLKRFQENGDRTLVFSQFTLVMDILEH 984

Query: 79   --SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                L            ++     +  ++E   IP+      + G G+NL    N +V F
Sbjct: 985  VLETLHLGFVRLDGRTNVEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIF 1043

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++ +      +     R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1044 DSSFNPQ-----EDVQAENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1097


>gi|50311185|ref|XP_455616.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644752|emb|CAG98324.1| KLLA0F11814p [Kluyveromyces lactis]
          Length = 931

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 33/211 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------------VHDEKIKALE 60
            L   N+   +S        ++ N       + +++E                 K++ L 
Sbjct: 582 QLNFSNMTFNSSLGLITLFKKICNSTRLIKTDPYYEERLSQVQTSSTSGKFTSGKLRILL 641

Query: 61  VIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
            ++ +        ++V  ++   L  ++                  T  +D       N+
Sbjct: 642 SLLHELKTKTDEKVVVISNYTQTLDIIEGHCSSEGYTSARLDGSTATKTRDQIVTSFNND 701

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +      S G GLNL  G + LV F   W+       I+   ++R  + G +R  F
Sbjct: 702 PSIFVFLLSAKSGGVGLNL-IGASRLVLFDNDWNPS-----IDLQAMSRIHRDGQRRPCF 755

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +Y L+    IDE +LQR   K  +    L++
Sbjct: 756 IYRLVTTGCIDEKILQRQLMKIALSKKFLDS 786


>gi|302804676|ref|XP_002984090.1| hypothetical protein SELMODRAFT_119222 [Selaginella moellendorffii]
 gi|300148442|gb|EFJ15102.1| hypothetical protein SELMODRAFT_119222 [Selaginella moellendorffii]
          Length = 561

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 32  CLQLANGA---VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
             +L         + + +    +   K + L  ++          ++   +   L  L+ 
Sbjct: 362 LHKLCCTHGMLASHSKLRDKDALESAKCQLLVKLLPHLQSAGHRPLIFSQWTGMLDILEW 421

Query: 87  AFPQGRTLDKD----------PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +              + ++N+   I        + G GLNL  G + ++  
Sbjct: 422 VLQVMNLSYRRLDGSTQVCERQSLVDDFNKELDIFAFLLSTRAGGQGLNLT-GADTVIIH 480

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++ +     ++R    R  + G  ++V VY L+ ++T+DE +    + K  + D +L
Sbjct: 481 DVDFNPQ-----MDRQAEDRCHRIGQSKSVTVYRLVTKSTVDENIYGIAQRKLVL-DAVL 534

Query: 196 NA 197
             
Sbjct: 535 EG 536


>gi|40215423|gb|AAR82736.1| SD21488p [Drosophila melanogaster]
          Length = 1645

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 770 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 829

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 830 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 889

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 890 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 943

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 944 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 988


>gi|322711118|gb|EFZ02692.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1235

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 19/173 (10%)

Query: 46   KHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKA----------FPQGRTL 94
            K  + +   KI+ +  I+  +A     IV   F S L  ++            +      
Sbjct: 1014 KQTQVLASAKIREVTKILHAEAEEHKFIVFSQFTSMLDLVEPFLDKDGFEYARYDGSMKN 1073

Query: 95   DKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D    +++    +    +L         GLNL      ++    +W+       +E   +
Sbjct: 1074 DDREESLRRLREDQSTRVLLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAI 1127

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-KKETIHV 205
             R  +      V VY L   +T++E ++     K  + +  +    KKE + +
Sbjct: 1128 DRVHRLTQTVDVVVYKLTVADTVEERIIDLQNKKRELAEQTIEGGAKKEAMKL 1180



 Score = 40.9 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           K Y + +    +    +    +   N+ +  ++  Q  N     
Sbjct: 697 KFYDRLEARADKSMEMMMQNKLSYANAFTLLLRLRQACNHPKLV 740


>gi|295666383|ref|XP_002793742.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226278036|gb|EEH33602.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 1240

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 26/171 (15%)

Query: 53   DEKIKALEVIIEKANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGR 92
              KI+    I+    +            I+   F S L              ++      
Sbjct: 1059 SAKIEKTMEILHDIQSRIPTGDDKPEKTIIFSQFTSLLDLLEVPILRKGWGYRRYDGSMN 1118

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
               ++   ++  +     ++     +   GLNL    + ++ F  +W+       IE   
Sbjct: 1119 PNQRNEAVMKFTDSKDCTIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQA 1172

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + R  + G  R V V+ ++ +NT+++ +L     K T+ +  L+    + I
Sbjct: 1173 IDRAHRIGQVRPVVVHRILVKNTVEDRILDLQEKKRTLIEGALDEGASQRI 1223


>gi|195442878|ref|XP_002069173.1| GK23635 [Drosophila willistoni]
 gi|194165258|gb|EDW80159.1| GK23635 [Drosophila willistoni]
          Length = 1720

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1095 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1154

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1155 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1214

Query: 91   -GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N       +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1215 GTTKAEDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1269

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1270 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1318


>gi|302842935|ref|XP_002953010.1| hypothetical protein VOLCADRAFT_30242 [Volvox carteri f.
           nagariensis]
 gi|300261721|gb|EFJ45932.1| hypothetical protein VOLCADRAFT_30242 [Volvox carteri f.
           nagariensis]
          Length = 791

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 64/202 (31%), Gaps = 37/202 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKIKALEVIIEK--ANA 68
             ++  +  N       +                       H  K++ ++ +  +     
Sbjct: 564 LMMELRKACNHPFLVAHQAGRGGAGRGGRGRHPTDLDSLVTHSGKLQLVDKMAMRLRDAG 623

Query: 69  APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGK--IPLLFAHP 116
             +I+   F   L  L++                   +    I  +N+            
Sbjct: 624 HRLIIFSQFTRTLDLLEEWLVGRGLGYMRIDGTVAGSERQKRIDRFNQHPDSYFCFLLST 683

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+        +     R  + G  + V +Y L+ + TI
Sbjct: 684 RAGGLGINL-ATADTVIIFDSDWNP-----HNDLQAQARAHRLGQDKPVMIYRLVTRQTI 737

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +E ++Q  R K  ++ L++  +
Sbjct: 738 EERMMQVSRKKMMLEHLVVRKM 759


>gi|325188110|emb|CCA22651.1| chromodomainhelicaseDNAbinding protein putative [Albugo laibachii
            Nc14]
          Length = 1883

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 38/228 (16%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH-------- 52
            + Y     +    L               ++  Q  N        +  +           
Sbjct: 1141 QYYRAIYDKNQSFLYRGIQNGLPRLVNIQLQLRQCCNHPFLIKGVEDRELQDLGPEPTMD 1200

Query: 53   ---------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
                       K   +  ++ K       +++   F   L  L++         +     
Sbjct: 1201 RIMDKTIQCSGKFVLVSKLLPKLKREGRKVLIFSQFLKQLDLLERYCEYHGFGYERLDGS 1260

Query: 98   ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                    +I  ++       +      + G G+NL    + +V F   W+ +      +
Sbjct: 1261 TNGAARQASIDRFSRPNAKSFVFLLSTKAGGVGINL-IAADTVVIFDSDWNPQN-----D 1314

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +R  + G  + V +Y L+ +NT +  + +R   K  ++  +L +
Sbjct: 1315 LQAQSRCHRIGQSKTVQIYRLVTRNTYESEMFERASQKLGLEHAVLGS 1362


>gi|255715511|ref|XP_002554037.1| KLTH0E12870p [Lachancea thermotolerans]
 gi|238935419|emb|CAR23600.1| KLTH0E12870p [Lachancea thermotolerans]
          Length = 1880

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 75/254 (29%), Gaps = 65/254 (25%)

Query: 2    KQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWK------ 49
            + Y  F ++   +++ +           +         +L N       + H +      
Sbjct: 1552 QLYKDFAKKQKNNVEQDIENVSEVDNKQHIFQALQYMRKLCNHPSLVVSKDHPQWSQVQD 1611

Query: 50   -----------EVHDEKIKALEVIIEKA----------------------NAAPIIVAYH 76
                         H  K+ AL+ ++ +                       +    ++   
Sbjct: 1612 YLKQTGFSLHDITHAPKLGALKNLLLECGIGIQDVDKKSKTYLPSTESVISQHRALIFCQ 1671

Query: 77   FNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
                L                                ++++N +  I  L       G G
Sbjct: 1672 LKDMLDMVENDLFKKYMPSVTYMRLDGSVESRDRQAVVRKFNEDPSIDCLLLTTKVGGLG 1731

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL  G + ++F    W+      M +   + R  + G K+ V VY +I + T++E ++ 
Sbjct: 1732 LNLT-GADTVIFIEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIITRGTLEEKIMG 1785

Query: 183  RLRTKSTIQDLLLN 196
              + K  I   ++N
Sbjct: 1786 LQKFKMNIASTVIN 1799


>gi|73986634|ref|XP_867838.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 21
            [Canis familiaris]
          Length = 1605

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 998  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1057

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1058 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1117

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1118 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1173

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1174 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1222


>gi|308493124|ref|XP_003108752.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
 gi|308248492|gb|EFO92444.1| hypothetical protein CRE_11128 [Caenorhabditis remanei]
          Length = 1496

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
             Y   ++ L  D    +  A + ++  V   +L N    +   +     H          
Sbjct: 788  IYRHMKKGLLLD-AKMSSGARSLSNTIVHLRKLCNHPFLFQNIEDSCRAHWKVNEVSGKD 846

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       +++ +     +   +                   D+
Sbjct: 847  LMRVAGKLELLDRILPKLKATGHRVLMFFQMTKMMDIFEDFLHFRNYTYLRLDGSTKPDE 906

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 907  RGDLLSLYNAPDSEYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 960

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 961  RAHRIGQKKEVRVLRLITANSVEEKMLAVARYKLNVDEKVIQAGK 1005


>gi|301106883|ref|XP_002902524.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098398|gb|EEY56450.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1449

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 66/217 (30%), Gaps = 50/217 (23%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEV------------HDEKIKALEVIIEKANA--- 68
            N  +      ++        ++   + +               K+  L  ++ +      
Sbjct: 1159 NVLTNLQLLRKICVHPALVADDAVTRGLTLKEKRALVDWKSSGKMTGLHDLLVECCDFAA 1218

Query: 69   ----------------APIIVAYHFNSDLARLQKAFPQG------------RTLDKDPCT 100
                               +V  H    L   ++                     K    
Sbjct: 1219 RDQSSASGDDDTSFSPHRCLVFAHLQKTLDLTEQMLENALPGVTYRRLDGRTPHTKRADI 1278

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q++N +  I +L    +  G GL L  G + ++F    W+       ++   + R  + 
Sbjct: 1279 VQQFNADPSIDVLLLTTSVGGLGLTLT-GADTVIFLEHSWNP-----FVDLQAMDRAHRI 1332

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G KR V V+ LI + +++E ++     K  +   ++ 
Sbjct: 1333 GQKRTVRVFRLIMERSLEEHIVNLQEFKEQVAATVVQ 1369


>gi|67481787|ref|XP_656243.1| SNF2 family protein [Entamoeba histolytica HM-1:IMSS]
 gi|56473432|gb|EAL50858.1| SNF2 family protein [Entamoeba histolytica HM-1:IMSS]
          Length = 1527

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 75/190 (39%), Gaps = 22/190 (11%)

Query: 10   ELYCDLQGENIEAFN---SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            + Y   +G+ I+            + L++ N      + +H   +  +    LE+I ++ 
Sbjct: 1289 DAYLKQEGKTIDDITNSPKLMALAELLEMCN---IGKDGEHRVLIFAQMNITLELIEKQL 1345

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNL 125
             A       ++  D              +K    + ++ N+  I +L       G GLNL
Sbjct: 1346 FAKQFPYISYYRLD---------GSVPQNKRTEIVDKFKNDPTIDVLLLTTRVGGLGLNL 1396

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                +I++F    W+  +     +   + R  + G  + V VY LI + T++E ++   +
Sbjct: 1397 TA-ADIVIFMEHDWNPTK-----DLQAMDRAHRLGQNKVVNVYRLIVRQTLEERIMNLQQ 1450

Query: 186  TKSTIQDLLL 195
             K+ I + ++
Sbjct: 1451 FKTKIANTVV 1460


>gi|296226943|ref|XP_002759149.1| PREDICTED: DNA repair and recombination protein RAD54B [Callithrix
           jacchus]
          Length = 910

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 557 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 615

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 616 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTERVVLVSNYTQTLN 675

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N     +        + G GLNL  GG+
Sbjct: 676 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGS 734

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 735 HLILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGL 789

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 790 CGAVVDLTK 798


>gi|119570411|gb|EAW50026.1| helicase, lymphoid-specific, isoform CRA_a [Homo sapiens]
          Length = 870

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEK---ANAAPIIVAY 75
            +   +  N     +                  +  K   L+ ++ +        +++  
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVVLLFS 623

Query: 76  HFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
              S L  L                  +  +    +  +N + ++ +      + G G+N
Sbjct: 624 QMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGIN 683

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + ++ +   W+ +      +     R  + G  + V VY L+  NTID+ +++R 
Sbjct: 684 LTA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERA 737

Query: 185 RTKSTIQDLLLN 196
             K  ++ L+++
Sbjct: 738 AAKRKLEKLIIH 749


>gi|238487276|ref|XP_002374876.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            flavus NRRL3357]
 gi|220699755|gb|EED56094.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            flavus NRRL3357]
          Length = 1172

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-----------LQK 86
              Y        V   KI+    I+   +      I+   F S L              ++
Sbjct: 987  RKYLRRLEKTWVSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRR 1046

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  D++   +   +     ++     +   GLNL    + ++ F  +W+      
Sbjct: 1047 YDGSMKPGDRNSAVLDFTDSPDCKIMLVSLKAGNSGLNLVA-ASQVIIFDPFWNP----- 1100

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             IE   + R  + G  R V ++ ++ QNT+++ +L+    K  + +  L+    + I
Sbjct: 1101 YIEEQAIDRAHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALDENASKNI 1157



 Score = 38.6 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 6/51 (11%)

Query: 1   MKQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDEE 45
           ++ Y   +          L+   +     N     ++  Q         + 
Sbjct: 751 LELYSSLEARTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDF 801


>gi|126313541|ref|XP_001362697.1| PREDICTED: similar to transcription termination factor, RNA
            polymerase II [Monodelphis domestica]
          Length = 1151

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 67/243 (27%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD---------------------- 53
              +     +  S  ++  Q               E++                       
Sbjct: 896  DSQGSSTVHILSLLLRLRQCCCHLSLLKSTLDQAELNSEGLFLSLEEQLNALTLSELHNP 955

Query: 54   --------------------------EKIKALEVIIEKANAA-PIIVAYHFNSDLARLQK 86
                                        + A   +I+K +     ++   +   L  +  
Sbjct: 956  DSATVYLNGTQFKMELFEDTRESTKISSLLAELELIQKNSEFQKSVIVSQWTCMLKIVAM 1015

Query: 87   AFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
               +               +    ++ +N       ++     + G GL+L  GGN L  
Sbjct: 1016 HLQRRGLTYAVIDGSVNPKQRMDLVEAFNNSCRGPQVMLISLLAGGVGLSLT-GGNHLFL 1074

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + W+     Q  +RI      + G K+ V ++  + ++T++E +    R K  +   +
Sbjct: 1075 LDMHWNPALEDQACDRI-----YRVGQKKDVVIHRFVCEDTVEEKISHLQRRKKDLASQV 1129

Query: 195  LNA 197
            L+ 
Sbjct: 1130 LSG 1132


>gi|73997416|ref|XP_867808.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 10 [Canis familiaris]
          Length = 1842

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 922  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 981

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 982  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1041

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1042 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1095

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1096 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1137


>gi|46137317|ref|XP_390350.1| hypothetical protein FG10174.1 [Gibberella zeae PH-1]
          Length = 1588

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 74/215 (34%), Gaps = 33/215 (15%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVI 62
             +  +   + N  +  ++  +       Y E    +                K+  L+V+
Sbjct: 1038 KMNKKERGSLN--NILMQLRKCLCHPFMYSEAIEERHHDPTVLQRNLVEASAKLLLLQVM 1095

Query: 63   IEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP 110
            + K       +++   F   L  ++          +              I  +N  + P
Sbjct: 1096 LPKLQERGHRVLIFSQFLQQLDIIEDFLSGLGYDYRRLDGSIGSLEKQRRIDAFNAPESP 1155

Query: 111  LL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +        + G G+NL    + ++     ++  +     +   ++R  + G K+ V  +
Sbjct: 1156 VFAFLLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVLCF 1209

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             L+  ++++E ++Q  + K  +   L+ ++  + +
Sbjct: 1210 QLMTIDSVEERIMQIGKKKMALDHALIESMDDDEL 1244


>gi|301773764|ref|XP_002922290.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 4-like [Ailuropoda melanoleuca]
          Length = 1906

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 978  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1037

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1038 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1097

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1098 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1151

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1152 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1193


>gi|327302542|ref|XP_003235963.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326461305|gb|EGD86758.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1053

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             KI+ L  ++++ +     IV   F S L +++     G               ++   
Sbjct: 813 SAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASL 872

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +L     +   GLNL    + +V    +W+       +E   + R  +  
Sbjct: 873 NRLRNSSGTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLN 926

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY L  + T++E +L+    K  +    +  
Sbjct: 927 QTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 963



 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 565 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 607


>gi|302663877|ref|XP_003023576.1| hypothetical protein TRV_02323 [Trichophyton verrucosum HKI 0517]
 gi|291187579|gb|EFE42958.1| hypothetical protein TRV_02323 [Trichophyton verrucosum HKI 0517]
          Length = 1054

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             KI+ L  ++++ +     IV   F S L +++     G               ++   
Sbjct: 813 SAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYARYDGGMRNDLREASL 872

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +L     +   GLNL    + +V    +W+       +E   + R  +  
Sbjct: 873 NRLRNSSGTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRLN 926

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V VY L  + T++E +L+    K  +    +  
Sbjct: 927 QTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 963



 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 565 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 607


>gi|73997432|ref|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 18 [Canis familiaris]
          Length = 1760

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|299751759|ref|XP_002911684.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
 gi|298409521|gb|EFI28190.1| RAD54B protein [Coprinopsis cinerea okayama7#130]
          Length = 1055

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN 105
           +  +   I        +V  HF S L  L+    Q               K    +  +N
Sbjct: 721 LAKMLKDIRNNTEEKCVVVSHFTSTLNILEAFCQQAGYSFYRLDGQTPQQKRQEYVNAFN 780

Query: 106 EGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +       +      + G G+NL  GG+ L      W+        +   + R  + G K
Sbjct: 781 KSSQRGGFVFLLSSKAGGVGINL-IGGSRLFLIDSDWNPSH-----DLQAMARCHRDGQK 834

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R VF+Y L+   TIDE + QR  TK  +   L+ +
Sbjct: 835 RPVFIYRLVTAGTIDEKIFQRQITKLGLSASLIGS 869


>gi|114643075|ref|XP_001162434.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 1921

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 965  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1024

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1025 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1084

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1085 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1138

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1139 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1180


>gi|157108127|ref|XP_001650089.1| helicase [Aedes aegypti]
 gi|108879396|gb|EAT43621.1| helicase [Aedes aegypti]
          Length = 1433

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 74/230 (32%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 859  LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHIGGH 918

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K  A+   +++       +  ++              
Sbjct: 919  GTVSGPDLYRASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLD 978

Query: 91   -GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    ++++N    +  +      + G GLNLQ   + +V F   W+  +    
Sbjct: 979  GTTKAEERGDLLKKFNCKNSEYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1033

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1034 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1082


>gi|134110664|ref|XP_776159.1| hypothetical protein CNBD2060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258827|gb|EAL21512.1| hypothetical protein CNBD2060 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1123

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 74/204 (36%), Gaps = 29/204 (14%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANA 68
           A +  +  ++  ++         E    ++              K++ L++++ K  A  
Sbjct: 7   AKSVRNILMELRKVCQHPYLSAPELEIFDLPLEEQHRQLLNASGKLQFLKLLLPKLIARG 66

Query: 69  APIIVAYHFNSDLAR--------LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPAS 118
             I++   F   L R                    +    + ++N       +      +
Sbjct: 67  HRILLFSQFKMALDRNFLYGENVKHLRLDGDTQQAQRQKYMDQFNAPNSDYHIFLLTTRA 126

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++     ++  + Q       + R  + G ++ V V+ L+ + +++E
Sbjct: 127 GGVGINL-ASADTVILHDPDFNPHQDQ-----QAIARAYRYGQEKRVLVFKLMIKGSVEE 180

Query: 179 LVLQRLRTKSTIQDLLLNALKKET 202
            ++ + + K  +  L++  + KET
Sbjct: 181 TIINKGKRKMVLDHLVVQQMGKET 204


>gi|255954897|ref|XP_002568201.1| Pc21g11700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589912|emb|CAP96067.1| Pc21g11700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1671

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1352 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1407

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        ++      + +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1408 GHRYLRLDGTTKVESRQMLTERFNSDPRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1466

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1467 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVIIQEGE 1520


>gi|195496271|ref|XP_002095622.1| GE19602 [Drosophila yakuba]
 gi|194181723|gb|EDW95334.1| GE19602 [Drosophila yakuba]
          Length = 899

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 70/222 (31%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           K Y     + +  L         +  +  +   +  N    +        +         
Sbjct: 521 KFYKLILTKNFKALNKNGGGRVCSLLNIMMDLRKCCNHPYLFSSAAEEATILPSGLYEIN 580

Query: 52  ----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L  ++++  A+   +++       L  L+          +         
Sbjct: 581 SLIKASGKLDLLSKMLKQLKADHHRVLIFSQMTKMLNILEDFLEGEGYQYERLDGNIRGD 640

Query: 98  --PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N  K    +      + G G+NL    + ++ F   W+        +    
Sbjct: 641 LRQEAIDRFNAPKAEQFVFLLSTRAGGLGINL-ATADTVILFDSDWNP-----HNDVQAF 694

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  +  N+++E ++Q ++ K  +  L++
Sbjct: 695 SRAHRMGQTKKVMIYRFVTHNSVEERIMQVVKHKMMLTHLVV 736


>gi|169598354|ref|XP_001792600.1| hypothetical protein SNOG_01979 [Phaeosphaeria nodorum SN15]
 gi|160704380|gb|EAT90191.2| hypothetical protein SNOG_01979 [Phaeosphaeria nodorum SN15]
          Length = 1307

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 43/209 (20%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---------------------- 62
           +    +   ++ N        K  +    E ++AL  +                      
Sbjct: 546 ALQLIMVLKKVCNSPSLIKTTKDGEATPSEMLQALLPLVPPHVLNSHASSTKLRLLDSLV 605

Query: 63  --IEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK-- 108
             I       I++  ++ + L  +++                  +K    ++++N+    
Sbjct: 606 HRIHTTTEEKIVIVSNYTTTLDMIERMLVSLSYTYLRLDGSTPSNKRQALVEKFNKTPKA 665

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                     S G GLNL  G + +V F + W+        +   + R  + G K  V +
Sbjct: 666 ASFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPAT-----DLQAMARIHRDGQKLPVKI 719

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y  + +  IDE + QR   K  + + +++
Sbjct: 720 YRFLVKGGIDEKIYQRQVMKMGLANAVVD 748


>gi|291388286|ref|XP_002710621.1| PREDICTED: RAD54 homolog B [Oryctolagus cuniculus]
          Length = 911

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           ++ Y K    +          E+           +L N           KE      +  
Sbjct: 556 IELYRKLLNSQAVRFCLQGLSESSPHLLCIGALKKLCNHPCLLFSTAKEKESSSSCNEDE 615

Query: 60  EVIIEK------------------------------------ANAAPIIVAYHFNSDLAR 83
           E  + K                                         +++  ++   L  
Sbjct: 616 ERSLYKGLLNVFPADYNPLLFTEEESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNI 675

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
           LQ+   +             + +    +  +N       +      + G GLNL  GG+ 
Sbjct: 676 LQEVCKRHGYAHTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSH 734

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 735 LILYDIDWNPAT-----DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLS 789

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 790 GAVVDLSK 797


>gi|269975285|gb|ACZ55509.1| helicase [Staphylococcus phage SA1]
          Length = 491

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 40/234 (17%)

Query: 4   YHKFQRELYCDLQGEN----------IEAFNSASKTVKCLQLANGAVY------------ 41
           Y   + E   ++  E+          IEA  +AS   K LQ+ +G +Y            
Sbjct: 247 YRMMEEESLVEIMPEDFDEHLDDPIVIEAEQAASLQSKLLQMCSGFIYDTKIVGITEDDK 306

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPI-IVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             ++K    +HD K  ALE ++E   A    ++AYHF   L RL++ F     +D D   
Sbjct: 307 VIKQKDTYRLHDLKFDALEELLETTLADKNVLIAYHFKPTLERLKERFKDLVVMDDDGKC 366

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I++WN GKI LL AHP S GHGLNLQ+GG+++V+    W LE   Q   R+      + G
Sbjct: 367 IKKWNAGKIRLLAAHPQSAGHGLNLQHGGHVIVYIDNPWSLERFLQFNGRL-----HRQG 421

Query: 161 FKRAVFVYYLIA---------QNTIDELVLQRLRTKSTIQD---LLLNALKKET 202
            K  V +Y   A           T D++V+Q L  K  +QD    LL  +K   
Sbjct: 422 QKFPVTIYQFKAMLRTPNGLLAETADDVVIQALVEKEDVQDAFFALLERIKGRI 475


>gi|134079366|emb|CAK96995.1| unnamed protein product [Aspergillus niger]
          Length = 910

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 45  EKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
           +   K +   KI+ L  I+  +++    IV   F S L +++    +            R
Sbjct: 665 DDDNKILPSTKIRRLMKILRRESSDHKFIVFSVFTSMLDKIEPFLKRTGIGYARYDGGMR 724

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++    +  N     +L     +   GLNL    + +V    +W+       +E   
Sbjct: 725 NDHREASLNKLRNNSGTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FVEEQA 778

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  +      V +Y +I + T++E ++     K  + ++ +  
Sbjct: 779 IDRVHRLNQTVDVKIYKMIIKGTVEERIIDLQDRKRELANVTIEG 823



 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    GE ++   +    ++  Q  N     
Sbjct: 531 MNFYQRLEQRTENSLEKMMGGEKVDYAGALVLLLRLRQSCNHPDLV 576


>gi|73986626|ref|XP_867807.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 17
            [Canis familiaris]
          Length = 1579

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 972  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1031

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1032 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1091

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1092 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1147

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1148 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1196


>gi|73946623|ref|XP_859981.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a2 isoform b
            isoform 10 [Canis familiaris]
          Length = 1456

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDE----EKHWKEVH 52
             Y   Q +      G   +           +  ++  ++ N    +        +   + 
Sbjct: 861  LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEVNCSNTVFLF 920

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 921  CLSGFRAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 980

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 981  DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1036

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1037 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1085


>gi|326480845|gb|EGE04855.1| chromodomain helicase hrp3 [Trichophyton equinum CBS 127.97]
          Length = 1558

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 743 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEEQAGGSTRREDQL 802

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 803 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 862

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 863 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 916

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 917 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 954


>gi|73997408|ref|XP_867779.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 6 [Canis familiaris]
          Length = 1870

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 922  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 981

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 982  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1041

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1042 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1095

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1096 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1137


>gi|10434055|dbj|BAB14112.1| unnamed protein product [Homo sapiens]
          Length = 730

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 222 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 281

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 282 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 341

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 342 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 398

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 399 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 455


>gi|325096129|gb|EGC49439.1| ATP-dependent helicase RIS1 [Ajellomyces capsulatus H88]
          Length = 1052

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 18/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
             + +   KI+ L  I++ ++     IV   F S L +++                    
Sbjct: 809 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 868

Query: 96  -KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++    +  N  K  +L     +   GLNL    + +V    +W+       +E   + 
Sbjct: 869 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAID 922

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 923 RVHRLNQTVDVKIYKLTIKNTVEERIVDLQERKRELANATIEG 965



 Score = 39.0 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   +  +NI   ++    ++  Q  N     
Sbjct: 549 YKRLEQRTDKTLERMIGDDNINYASALVLLLRLRQACNHPDLV 591


>gi|302683608|ref|XP_003031485.1| hypothetical protein SCHCODRAFT_77313 [Schizophyllum commune H4-8]
 gi|300105177|gb|EFI96582.1| hypothetical protein SCHCODRAFT_77313 [Schizophyllum commune H4-8]
          Length = 634

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 21/189 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLA----- 82
             +           +        K++ +  I+++          IV   F S L      
Sbjct: 429 LDRFCRDCAMLKAMRVDGMSSSAKLRKIMEILDEIEDRGEGEKTIVFSQFTSMLDLIEPF 488

Query: 83  ------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                 R  +   + R   ++    Q      I ++     +   GLNL    N ++   
Sbjct: 489 LKKRGVRFVRYDGKMRADMREHSLKQIRENESIKVILISFKAGSTGLNLTA-CNNVILVD 547

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +WW+        E     R  + G +R V +Y L   +T+++ +L     K  +    L+
Sbjct: 548 MWWNPAL-----EDQAFDRAHRFGQQRPVNIYKLKIDDTVEDRILALQEKKRELTKAALS 602

Query: 197 ALKKETIHV 205
             K + + +
Sbjct: 603 GEKVKNLRL 611


>gi|241250526|ref|XP_002403274.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
 gi|215496466|gb|EEC06106.1| chromodomain helicase DNA binding protein, putative [Ixodes
           scapularis]
          Length = 1514

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 37/221 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y    +       G    +    +  ++  +  N AV     +     + + ++ +  
Sbjct: 725 KNYKALSK-------GVKGSSSGFINIMMELKKCCNHAVLIRPPEQPAVNNVDALQQIIR 777

Query: 61  -----------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
                      +   K     ++V       L  +       R   +             
Sbjct: 778 GSGKLLLLDKLLCRLKETGHRVLVFSQMVRMLDIIADYLQLRRFPFQRLDGSIKGELRRQ 837

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N              + G G+NL    + +V F   W+ +      +     R  
Sbjct: 838 ALDHFNADTSQDFCFLLSTRAGGLGINL-ATADTVVIFDSDWNPQN-----DLQAQARAH 891

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 892 RIGQKNQVNIYRLVTKNSVEEDIIERAKRKMVLDHLVIQRM 932


>gi|322828989|gb|EFZ32571.1| helicase, putative [Trypanosoma cruzi]
          Length = 1268

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 65   KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
            +     +++   F   L                       ++    +  +N + +I  + 
Sbjct: 903  RREGHRMLIFTQFVHMLNILERFLAIIGIPYLRIDGSTQAERRQAFVDRFNEDDRITCMI 962

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                S G GLNL  G + ++F+   W+       ++     R  + G  + V +Y LI++
Sbjct: 963  LSTRSGGIGLNLT-GADTVIFYDSDWNPT-----MDLQAQDRCHRIGQTKPVTIYRLISE 1016

Query: 174  NTIDELVLQRLRTKSTIQDLLL 195
            +T++E +LQR R +  + ++++
Sbjct: 1017 HTVEENILQRARERKKLNNVVI 1038


>gi|154346446|ref|XP_001569160.1| helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066502|emb|CAM44296.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1284

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFP-QGRTLDK---------DPC 99
               K++ LE  +   + +   +++   F + L  L++     G    +            
Sbjct: 866  DCGKLQFLETALKKMRHDGHRVLIFTQFVNMLNILERFLALIGVVYTRLDGSTKAELRQQ 925

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N + +I  +     S G GLNL  G + ++F+   W+       ++     R  +
Sbjct: 926  YVDRFNADPRITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT-----MDLQAQDRCHR 979

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  R V +Y LI+++T++E +L++ R +  + ++++
Sbjct: 980  IGQTRPVTIYRLISEHTVEESILEKARERKKLNNVVI 1016


>gi|73977360|ref|XP_864115.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 8
           (CHD-8) (Helicase with SNF2 domain 1) isoform 3 [Canis
           familiaris]
          Length = 1934

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 71/236 (30%), Gaps = 42/236 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L     +    N  +  ++  +  N     +  +             
Sbjct: 410 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHI 469

Query: 52  ------------HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K       +++       L  L+    Q R L + 
Sbjct: 470 IPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYER 529

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 530 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 586

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L ++   
Sbjct: 587 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 639


>gi|326476226|gb|EGE00236.1| chromodomain helicase [Trichophyton tonsurans CBS 112818]
          Length = 1558

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 743 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEEQAGGSTRREDQL 802

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 803 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 862

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 863 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 916

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 917 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 954


>gi|218200191|gb|EEC82618.1| hypothetical protein OsI_27196 [Oryza sativa Indica Group]
          Length = 1734

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y       + +L         +  +  V+  +  N    ++   H         +   
Sbjct: 845  QYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGDRNKV 904

Query: 61   VIIEKANA----------------APIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
              I  ++                   +++       L  L +         +        
Sbjct: 905  ERIVMSSGKLVLLDKLLVRLRETNHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRA 964

Query: 98   ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  ++ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 965  DLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQA 1018

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1019 MSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEG 1068


>gi|159131149|gb|EDP56262.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           A1163]
          Length = 1523

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 864

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 865 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 903


>gi|146081503|ref|XP_001464269.1| DNA excision repair protein [Leishmania infantum JPCM5]
 gi|134068360|emb|CAM66648.1| putative DNA excision repair protein [Leishmania infantum JPCM5]
          Length = 1261

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 56/217 (25%)

Query: 29   TVKCLQLANG-------------------------------------AVYYDEEKHWKEV 51
              +  Q+ N                                         +        +
Sbjct: 799  MNQLRQICNHADIYAVQQGADEEDRMMLGRRGAAAKLSAISAARPGQHRSFRSNNPVDLL 858

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
               K+ AL +++   ++    ++V       L  ++    Q                   
Sbjct: 859  GSGKLNALLMMLKEWQSFGHRVLVFSQTRMMLDIIENMCEQQAYRYIRMDGATNSHYRQE 918

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N +  I +        G G+NL  G + +V F   W+      + +     R  +
Sbjct: 919  LMDRFNEDVSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNP-----ITDVQARERAWR 972

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 973  IGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1009


>gi|157107190|ref|XP_001649665.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108879646|gb|EAT43871.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 2002

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 75/223 (33%), Gaps = 32/223 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y     + +  L+     + N+  +  ++  +  N A+    E+   +          
Sbjct: 820  QYYRWILTKNFDALRKGTKGSINTFLNIMIELKKCCNHALLTKPEEFENQTNQDEVVVQL 879

Query: 51   -VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
                 K+  L+ ++   K     +++       L  L +   +     +           
Sbjct: 880  LKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELR 939

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N              + G G+NL    + ++ F   W+ +      +     R
Sbjct: 940  KQALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQAR 993

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 994  AHRIGQKNQVNIYRLVTARSVEEDIVERAKKKMVLDHLVIQRM 1036


>gi|302793538|ref|XP_002978534.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
 gi|300153883|gb|EFJ20520.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
          Length = 1858

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 16/192 (8%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
             E+  + + + +E        +  L                 V  + +     +IE    
Sbjct: 1340 EEILKESKRDVLENSGKMVLIMTLL------SLNSSRGEKTLVFSQSL-HTLDLIENFLD 1392

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNL 125
               +       +  R         T  +       +N+     I  L     +   G N+
Sbjct: 1393 TIPLGGSQDVWNKGREWLRLDGNTTASRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNM 1452

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              G N ++     W+        +   + R  + G  + VFVY L+A  T++E +  R  
Sbjct: 1453 T-GANRVIIVDGSWNPTH-----DLQALFRAWRYGQTKPVFVYRLLAYGTMEEKIYNRQL 1506

Query: 186  TKSTIQDLLLNA 197
            TK  I   +L+A
Sbjct: 1507 TKEGIAARVLDA 1518


>gi|260946861|ref|XP_002617728.1| hypothetical protein CLUG_03172 [Clavispora lusitaniae ATCC 42720]
 gi|238849582|gb|EEQ39046.1| hypothetical protein CLUG_03172 [Clavispora lusitaniae ATCC 42720]
          Length = 1284

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+  L+ ++++   N   ++V +     +  +++     +              +   
Sbjct: 1059 SGKLSKLDKLLDELKQNDHRVLVYFQMTKMMDLMEEFLTFRQHNYVRLDGSSKLEDRRDL 1118

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  + +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1119 VHDWQTKPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1172

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  + V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1173 GQTKQVTVYRLLTKGTIEERMRDRAKQKEQVQQVVMEG 1210


>gi|172087300|ref|XP_001913192.1| TBP-associated factor 172 [Oikopleura dioica]
 gi|48994300|gb|AAT47874.1| TBP-associated factor 172 [Oikopleura dioica]
          Length = 1665

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 28/208 (13%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQL---A-----NGAVYYDEEKHWKEVHDEK 55
            Y     +   D  G +I     A K     QL         NG+V  +        H   
Sbjct: 1398 YQSIMTD--LDRNGSSIRDIEHAPKIKALKQLLTECGIGQRNGSVVSEHRALIFCQHKSM 1455

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            +  +E  + K+N  P +                            +  +N +  I +L  
Sbjct: 1456 LDIIERDLFKSNQLPSVSFSR-----------LDGSVPAGARHGIVSRFNRDPTIDVLLL 1504

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G ++++F    W+ +     ++   + R  + G K+ V VY LI +N
Sbjct: 1505 TTKVGGLGLNLT-GADVVIFVEHDWNPQ-----MDLQAMDRAHRIGQKKTVNVYRLITRN 1558

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            T++E ++   + K +I + L++      
Sbjct: 1559 TVEEKIMGLQKFKLSIANSLVSGDNASM 1586


>gi|242767903|ref|XP_002341462.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724658|gb|EED24075.1| chromodomain helicase (Chd1), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1499

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEK------------- 46
           ++ Y     + Y  L +G N +  +  +  ++  + +N    +   +             
Sbjct: 686 LEYYKNILTKNYAALNEGANGQKQSLLNIMMELKKASNHPFMFPNAEAKLLEGNTRREDL 745

Query: 47  -HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 746 LRIMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMRFRGYQYQRLDGTIS 805

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 806 ATNRRVAMEHFNAPDSSDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 859

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++TI+E VL+R R K  +
Sbjct: 860 AMARAHRIGQTKPVSVYRLVSKDTIEEEVLERARNKLML 898


>gi|156848828|ref|XP_001647295.1| hypothetical protein Kpol_1002p85 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117980|gb|EDO19437.1| hypothetical protein Kpol_1002p85 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1070

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 31/220 (14%)

Query: 2   KQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           K Y +      +      G         +  ++  + +N    +D  E        +  +
Sbjct: 383 KWYKQILEKDLDAVNGANGNKESKTRLLNIVMQLRKCSNHPYLFDGAEPGPPYTTDEHLV 442

Query: 57  KALEVIIEKA--------NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
              E ++             + +++    +  L  L+                   +   
Sbjct: 443 YNSEKLLVLDKLLKKLKAEGSRVLIFSQMSRILDILEDYCYFRGYEYCRIDGSTAHEDRI 502

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N       L      + G G+NL    +++V +   W+ +      +   + R 
Sbjct: 503 QAIDDYNAPDSNKFLFLLTTRAGGLGINLTS-ADVVVLYDSDWNPQA-----DLQAMDRA 556

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+ V V+ L+  N+++E +L+R   K  +  L++ 
Sbjct: 557 HRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQ 596


>gi|145491053|ref|XP_001431526.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398631|emb|CAK64128.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1668

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 38/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIE-AFNSASKTV---KCLQLANGAVYYDEEKHWKEVH------ 52
             Y          L+    + A N+AS      +  +  N      E ++           
Sbjct: 805  IYKALYERNKSMLEQGFSQWAANAASLNNLEIQLRKCCNHPFLIQEMQNDLTKGCSNKND 864

Query: 53   --------DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK------ 96
                      K+  L+ ++ K       +++   F   L+ L++     +   +      
Sbjct: 865  YILKLVECSGKMILLDKLLNKFRNEGKKMLIFSQFTMMLSILEEYLKFRQVKYEKIDGQI 924

Query: 97   ----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    I  +N+ +    +      + G G+NL     I+V +   W+ +      + 
Sbjct: 925  KARERQNAIDRFNDPQKKREVFLLSTKAGGQGINLTA-AEIVVIYDSDWNPQN-----DV 978

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G  + V VY LI ++T +  + +R   K  +   + 
Sbjct: 979  QATARAHRIGQSKEVTVYRLITKDTYEAEMFERAIKKLGLDQAIF 1023


>gi|157107192|ref|XP_001649666.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108879647|gb|EAT43872.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 2001

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 75/223 (33%), Gaps = 32/223 (14%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            + Y     + +  L+     + N+  +  ++  +  N A+    E+   +          
Sbjct: 820  QYYRWILTKNFDALRKGTKGSINTFLNIMIELKKCCNHALLTKPEEFENQTNQDEVVVQL 879

Query: 51   -VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
                 K+  L+ ++   K     +++       L  L +   +     +           
Sbjct: 880  LKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQKRHFSFQRLDGSIKGELR 939

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N              + G G+NL    + ++ F   W+ +      +     R
Sbjct: 940  KQALDHFNAEGSTDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQAR 993

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 994  AHRIGQKNQVNIYRLVTARSVEEDIVERAKKKMVLDHLVIQRM 1036


>gi|73997438|ref|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 21 [Canis familiaris]
          Length = 1889

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 961  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1020

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1021 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1080

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1081 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1134

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1135 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1176


>gi|301622634|ref|XP_002940630.1| PREDICTED: hypothetical protein LOC100494134 [Xenopus (Silurana)
           tropicalis]
          Length = 914

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F +    +         +++    ++ +N + +I        S G G+NL  G + ++F
Sbjct: 10  QFLNYHGHIYLRLDGSTRVEQRQVLMERFNMDRRIFCFILSTRSGGVGINLT-GADTVIF 68

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+       ++     R  + G  R V +Y L+++ T++E +L++ + K  + D+ 
Sbjct: 69  YDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTVEENILKKAQQKRMLGDMA 123

Query: 195 LNA 197
           +  
Sbjct: 124 IEG 126


>gi|253744203|gb|EET00442.1| DNA-dependent ATPase, putative [Giardia intestinalis ATCC 50581]
          Length = 1272

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 74/211 (35%), Gaps = 27/211 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKAL 59
             + L       +I   +  +  ++  + A+    ++  +               K+  L
Sbjct: 439 LDKVLRSKSNTSSIGKTSLINIVMQLRKCADHPYLFNGVEPQPFKEGDHIVNVSGKMVVL 498

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
           + +I +       ++V     S L  +                   L+     ++ +N  
Sbjct: 499 DKLITRIKAINEKVLVFCQMTSMLNIIEDYLRYREHLYCRIDGSTDLETRAKYMKMFNMP 558

Query: 108 KIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             P+        +   GLNL    N ++ +   ++ +      +   V R  +    + V
Sbjct: 559 TSPVFVFLLSTRAGCLGLNLTA-ANHVIIYQQDFNPQA-----DLQAVARAYRLLQTKEV 612

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           FVY L+A+NT+D  + +R + K  + +L++ 
Sbjct: 613 FVYRLLAENTVDTRIYERAQLKLGLDNLIIQ 643


>gi|320169070|gb|EFW45969.1| TBP-associated factor 172 [Capsaspora owczarzaki ATCC 30864]
          Length = 2065

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    + ++N +  I LL       G GLNL  G + ++F   
Sbjct: 1856 HMPTVSYLRLDGSIPPLERFAIVTKFNEDPSIDLLLLTTHVGGLGLNLT-GADTVIFIDH 1914

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             W+        +   + R  + G ++ V VY LI + T++E ++   + K  I + ++
Sbjct: 1915 DWNPSR-----DLQAMDRAHRIGQRKVVNVYRLITRGTLEEKIMSLQQFKLNIANTVI 1967


>gi|316972001|gb|EFV55707.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1787

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 44/233 (18%)

Query: 3    QYHKFQRELYCDLQGENIEA--------FNSASKTVKCLQLANGAVYYDEEKHWKEVH-- 52
             Y   Q +     +  +               +  ++  +L N    ++  +     H  
Sbjct: 1048 LYQHMQAKGVMVTRETDKTKKGTPAAGVRTLMNTVMQLRKLCNHPYMFEHIEEAMAEHFG 1107

Query: 53   --------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                            K + L+ ++ K  A+   +++       +  ++  F        
Sbjct: 1108 YPDKIVSGPELYRASGKFELLDRVLPKLKASGHRVLLFCQMTCLMTIMEDYFHYRDFKYL 1167

Query: 91   ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +     + ++N       +      + G GLNLQ   + ++ F   W+  + 
Sbjct: 1168 RLDGTTKSEDRGELLAKFNAPASDYFIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ- 1225

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +     R  + G  R V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1226 ----DIQAQDRAHRIGQLREVRVLRLMTVNSVEERILAAARYKLNVDEKVIQA 1274


>gi|297690951|ref|XP_002822857.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
            protein 4-like [Pongo abelii]
          Length = 1879

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 966  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1025

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1026 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1085

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1086 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1139

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1140 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1181


>gi|255586403|ref|XP_002533848.1| ATP binding protein, putative [Ricinus communis]
 gi|223526215|gb|EEF28539.1| ATP binding protein, putative [Ricinus communis]
          Length = 1339

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 20/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
               +   +          K++ L++++++  A    +++       L  L+         
Sbjct: 1130 CPPMQSFDPAK-LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYR 1188

Query: 91   -------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      +D+        +   I +      + G G+NL    + ++F+   W+   
Sbjct: 1189 YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA-ADTVIFYESDWNPTL 1247

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 +   + R  + G  + V VY LI + T++E +LQR   K+T+Q L++
Sbjct: 1248 -----DLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVM 1294


>gi|169617355|ref|XP_001802092.1| hypothetical protein SNOG_11855 [Phaeosphaeria nodorum SN15]
 gi|160703388|gb|EAT80899.2| hypothetical protein SNOG_11855 [Phaeosphaeria nodorum SN15]
          Length = 1950

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-------------DKDPCTIQEWN-E 106
             + E  +    ++       L  +Q    Q                  K    + ++N +
Sbjct: 1715 DLPEAVSQHRALIFCQMKEMLDMVQNTVLQKMLPSVQFMRLDGTVEATKRQEIVNKFNSD 1774

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L    +  G GLNL  G + ++F    W+ ++     +   + R  + G K+ V 
Sbjct: 1775 PSYDVLLLTTSVGGLGLNLT-GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVN 1828

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ + T++E +L   R K  +   ++N
Sbjct: 1829 VYRIVTRGTLEEKILSLQRFKIDVASTVVN 1858


>gi|119609185|gb|EAW88779.1| chromodomain helicase DNA binding protein 4, isoform CRA_c [Homo
            sapiens]
          Length = 1908

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 981  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1040

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1041 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1100

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1101 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1154

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1155 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1196


>gi|294660081|ref|XP_002770708.1| DEHA2G22682p [Debaryomyces hansenii CBS767]
 gi|218512083|sp|Q6BGY8|INO80_DEBHA RecName: Full=Putative DNA helicase INO80
 gi|199434455|emb|CAR66027.1| DEHA2G22682p [Debaryomyces hansenii]
          Length = 1364

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+  L+ ++     N   +++ +     +  +++     +              +   
Sbjct: 1141 SGKLSKLDELLVDLRQNDHRVLIYFQMTKMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDL 1200

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  + +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1201 VHDWQTKPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1254

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1255 GQTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEG 1292


>gi|119609183|gb|EAW88777.1| chromodomain helicase DNA binding protein 4, isoform CRA_a [Homo
            sapiens]
          Length = 1911

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|51599156|ref|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Homo sapiens]
 gi|311033360|sp|Q14839|CHD4_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
            Short=CHD-4; AltName: Full=ATP-dependent helicase CHD4;
            AltName: Full=Mi-2 autoantigen 218 kDa protein; AltName:
            Full=Mi2-beta
          Length = 1912

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|1107696|emb|CAA60384.1| Mi-2 protein [Homo sapiens]
 gi|119609184|gb|EAW88778.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Homo
            sapiens]
          Length = 1912

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|308491646|ref|XP_003108014.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
 gi|308249961|gb|EFO93913.1| hypothetical protein CRE_12565 [Caenorhabditis remanei]
          Length = 1375

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 35/225 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
             Y   +  +  D    +  A +  +  V+  +L N    +   +                
Sbjct: 785  MYRSMKNGVLLD-GKTSSGARSLMNTIVQLRKLCNHPFLFPTIEESCRTSWKVNHVGGLD 843

Query: 54   -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                  K++ L+ I+ K       +++ +   S +   +                   D+
Sbjct: 844  LMRVAGKLELLDRILPKLKATGHRVLMFFQMTSMMTIFEDYLNFRNHTYLRLDGSTKPDE 903

Query: 97   DPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                +  +N              + G GLNLQ   + ++ F   W+  +           
Sbjct: 904  RGDLLTLYNAPDSKYFLFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 957

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V V  LI  N+++E +L   R K  + + ++ A K
Sbjct: 958  RAHRIGQKKEVRVLRLITANSVEEKILAAARYKLNVDEKVIQAGK 1002


>gi|303324355|ref|XP_003072165.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111875|gb|EER30020.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037193|gb|EFW19131.1| SWI/SNF family DNA-dependent ATPase Ris1 [Coccidioides posadasii
           str. Silveira]
          Length = 988

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 53  DEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------- 97
             KI     I+ +     N    I+   F + L  L+    +     +            
Sbjct: 810 SSKIDKALEILREIESCNNGEKTIIFSQFTTLLDLLEVPIMREGWHYRRYDGSMSPIQRN 869

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++  +     ++     +   GLNL    + ++ F  +W+       IE   + R  
Sbjct: 870 EAVLEFSDNENCKIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP-----YIEEQAIDRAH 923

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V V+ ++ ++T+++ +L+    K  + +  L+ 
Sbjct: 924 RIGQIRPVMVHRILVRDTVEDRILELQEKKRELIENALDE 963



 Score = 35.5 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 6/55 (10%)

Query: 4   YHKFQRELYCD----LQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           Y   +++        L    +     N     ++  Q                V+
Sbjct: 563 YQSLEQKTQNQFNRYLDNGTVGKHYSNVLVMLLRLRQACCHPHLIQLFSDDSHVN 617


>gi|222637616|gb|EEE67748.1| hypothetical protein OsJ_25446 [Oryza sativa Japonica Group]
          Length = 1734

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y       + +L         +  +  V+  +  N    ++   H         +   
Sbjct: 845  QYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGDRNKV 904

Query: 61   VIIEKANA----------------APIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
              I  ++                   +++       L  L +         +        
Sbjct: 905  ERIVMSSGKLVLLDKLLVRLRETNHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRA 964

Query: 98   ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  ++ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 965  DLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQA 1018

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 1019 MSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEG 1068


>gi|73997402|ref|XP_867754.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 3 [Canis familiaris]
          Length = 1905

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|73986628|ref|XP_867815.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 18
            [Canis familiaris]
          Length = 1593

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 986  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1045

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1046 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1105

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1106 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1161

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1162 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1210


>gi|70995269|ref|XP_752395.1| chromodomain helicase (Chd1) [Aspergillus fumigatus Af293]
 gi|66850030|gb|EAL90357.1| chromodomain helicase (Chd1), putative [Aspergillus fumigatus
           Af293]
          Length = 1523

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 691 LEYYKNILTKNYAALNDGAQGQKQSLLNIMMELKKASNHPFMFPNAEAKILEGSTRREDV 750

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 751 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMESRGYSYQRLDGTIP 810

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 811 AASRRLAIEHFNAPGSSDFCFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 864

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 865 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 903


>gi|322497673|emb|CBZ32748.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1262

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 56/217 (25%)

Query: 29   TVKCLQLANG-------------------------------------AVYYDEEKHWKEV 51
              +  Q+ N                                         +        +
Sbjct: 799  MNQLRQICNHADIYAVQQGADEEDRMMLGRRGAAAKLSAISAARPGQHRSFRSNNPVDLL 858

Query: 52   HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
               K+ AL +++   ++    ++V       L  ++    Q                   
Sbjct: 859  GSGKLNALLMMLKEWQSFGHRVLVFSQTRMMLDIIENMCEQQAYRYIRMDGATNSHYRQE 918

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +N +  I +        G G+NL  G + +V F   W+      + +     R  +
Sbjct: 919  LMDRFNEDVSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNP-----ITDVQARERAWR 972

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 973  IGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 1009


>gi|224043897|ref|XP_002197085.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            [Taeniopygia guttata]
          Length = 1919

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 978  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1037

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1038 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1097

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1098 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1151

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1152 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1193


>gi|15291937|gb|AAK93237.1| LD32234p [Drosophila melanogaster]
          Length = 1095

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 234 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 293

Query: 90  QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 294 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 352

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 353 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 406


>gi|42569923|ref|NP_182025.2| transcription regulatory protein SNF2, putative [Arabidopsis
           thaliana]
 gi|330255398|gb|AEC10492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 84/225 (37%), Gaps = 31/225 (13%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEV 51
           K Y    ++EL    +L        +  +  ++  +  +    +        EE      
Sbjct: 306 KIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQ 365

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ ++++ +     +++     S L  LQ                   ++   
Sbjct: 366 ASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFA 425

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ ++       +      + G GLNL    + ++F+   W+ +     +++  + R  
Sbjct: 426 AIKNFSVDGSNAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ-----VDKQALQRAH 479

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKE 201
           + G    V    L+ +++++E++L+R   K  +   ++ + ++++
Sbjct: 480 RIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEK 524


>gi|71000114|ref|XP_754774.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66852411|gb|EAL92736.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159127782|gb|EDP52897.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1133

 Score = 91.0 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 32   CLQLA-NGAVYYDEE--KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN-------- 78
            C QL  N      +   K+ + ++  K+  L  ++   + N    +V   F         
Sbjct: 925  CHQLCLNHPHSLGKFALKNEEWMNSGKVDKLCELLKRFQENGDRTLVFSQFTLVMDILEH 984

Query: 79   --SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                L            ++     +  ++E   IP+      + G G+NL    N +V F
Sbjct: 985  VLETLHLGFVRLDGRTNVEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIF 1043

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++ +      +     R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1044 DSSFNPQ-----EDVQAENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1097


>gi|321478915|gb|EFX89871.1| DNA excision repair protein ERCC-6-like protein [Daphnia pulex]
          Length = 1584

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 26/162 (16%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K+  +E ++   K     +++       L  L+    Q                    
Sbjct: 1033 SGKLLVVESLLKIWKEQNHRVLLFSQSRQMLDILECFIRQQSYNYLRLDGTTSIGSRQPM 1092

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+++N    I +        G         N ++ +   W+        +     R  + 
Sbjct: 1093 IEKYNKSADIFVFLLTTRVGG--------ANRVIIYDPDWNPST-----DTQARERAWRI 1139

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G ++ V +Y L+   TI+E +  R   K  + + +L   K+ 
Sbjct: 1140 GQQKDVTIYRLLTSGTIEEKIYHRQIFKQYLTNRVLKDPKQR 1181


>gi|294658278|ref|XP_460608.2| DEHA2F05676p [Debaryomyces hansenii CBS767]
 gi|202953010|emb|CAG88933.2| DEHA2F05676p [Debaryomyces hansenii]
          Length = 1161

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            R+   +    N  +    +   K  QL    +  ++        ++ +  ++ ++E    
Sbjct: 949  RDKIAEFYNINYSSNGKTTNMQKIRQL----IQENKGFTPSAKMEKCMHLIKDVLENYPD 1004

Query: 69   APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              II+   F S    ++            +    +LD+   TI+++ +G   +L     +
Sbjct: 1005 EKIIIFSQFLSLFDLMKLVLANEKIPFLRYDGSMSLDEKNSTIKQFYQGSTKVLLISLRA 1064

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL L    + ++    +W+       +E   + R  + G +R V V+ ++ + +++ 
Sbjct: 1065 GNVGLTLT-CASHVIIMDPFWNP-----YVEEQAMDRAHRIGQQRDVRVHRILTEGSVEG 1118

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             ++     K  I    L+ 
Sbjct: 1119 RIMTLQNEKKEIISGALDE 1137



 Score = 35.9 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 9/151 (5%)

Query: 4   YHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           Y +      ++        +     +  +  ++  Q    +    E    K    E   A
Sbjct: 762 YRELEQGIQKKAKTLLASEKLGSTSSILTLLLRLRQACCHSFLV-EMGRMKAAESE---A 817

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            + +I +   +  +    F+ D     +       L K     +        L       
Sbjct: 818 TKTLITRDWKSMYVNIQKFDEDTINRIRNEVHQGNLLKGENEGESNTNSDEDLFTCPICY 877

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              G       +          +E   +  E
Sbjct: 878 DVLGYESIVLFSGCGHMICNNCIENFFERFE 908


>gi|167539947|ref|XP_001741453.1| chromodomain helicase hrp1 [Entamoeba dispar SAW760]
 gi|165893990|gb|EDR22091.1| chromodomain helicase hrp1, putative [Entamoeba dispar SAW760]
          Length = 1249

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 37/225 (16%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYD---------------E 44
           + Y     +    L    +     N  +  ++  ++ N                     +
Sbjct: 552 QYYRALYEKNREFLNKGCVGSNVPNLQNLMMQLRKVCNHPYLIPGVEEKDTAQFPEGSPD 611

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
             +       K+  L+ ++ K  A+   +++       L  ++K         +      
Sbjct: 612 YFNQLIRSSGKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYERLDGSI 671

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +   ++   +      + G G+NL    + ++ +   W+ +      + 
Sbjct: 672 KSEDRQNAIDRFMNPEMNRFIFLLCTRAGGFGINL-SEADTVIIYDSDWNPQN-----DL 725

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G K+ V VY L+++NT +  + +R   K  +   +L
Sbjct: 726 QAQARCHRIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVL 770


>gi|119173796|ref|XP_001239291.1| hypothetical protein CIMG_10313 [Coccidioides immitis RS]
          Length = 1520

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +   +             
Sbjct: 708 LEYYKNILTKNYAALNQGAKGQKQSLLNIMMELKKASNHPFMFANAEDRILQGSTRREDA 767

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 768 LRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDILADYMDARGFAYQRLDGTIA 827

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 828 AGPRRLSIEHFNAPDSTDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 881

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++T++E V++R R K  +
Sbjct: 882 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 920


>gi|330417956|ref|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 [Bos taurus]
 gi|296487143|gb|DAA29256.1| chromodomain helicase DNA binding protein 4 [Bos taurus]
          Length = 1912

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|73997406|ref|XP_867770.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 5 [Canis familiaris]
          Length = 1910

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 962  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1021

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1022 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1081

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1082 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1135

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1136 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1177


>gi|328703392|ref|XP_001951508.2| PREDICTED: helicase domino-like [Acyrthosiphon pisum]
          Length = 2483

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 20   IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
            I A +      + +Q   G +   +      + + K     V+I       + +   F +
Sbjct: 1322 ISAMSVLFPDQRLIQYDCGKLQSLDY----LLRELKTGHHRVLIFTQMTKMLDILEAFLN 1377

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +         ++     ++ +N + +         S G G+NL  G + ++F+   
Sbjct: 1378 FHGYIYLRLDGTTKVETRQLLMERFNADKRYFCFILSTRSGGVGINLT-GADTVIFYDSD 1436

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + DL +  
Sbjct: 1437 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLISEKTIEENILKKANQKRLLGDLAIEG 1490


>gi|73997444|ref|XP_867907.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 23 [Canis familiaris]
          Length = 1895

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 967  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1026

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1027 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1086

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1087 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1140

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1141 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1182


>gi|224139776|ref|XP_002323271.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867901|gb|EEF05032.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1540

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 20/172 (11%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
               +   +          K++ L++++++  A    +++       L  L+         
Sbjct: 1201 CPPMQSFDPAK-LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYR 1259

Query: 91   ------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    T+      ++++     I +      + G G+NL    + ++F+   W+   
Sbjct: 1260 YLRLDGSSTIMDRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTA-ADTVIFYESDWNPTL 1318

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 +   + R  + G  + V VY LI + T++E +LQR   K+T+Q L++
Sbjct: 1319 -----DLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVM 1365


>gi|156369786|ref|XP_001628155.1| predicted protein [Nematostella vectensis]
 gi|156215124|gb|EDO36092.1| predicted protein [Nematostella vectensis]
          Length = 756

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 47/243 (19%)

Query: 3   QYHKFQRELYCDLQGENIEA-------FNSASKTVKCLQLANGAVYYDEEKHWKEVH--- 52
            Y +        ++              +S        +L N      E+   ++     
Sbjct: 422 IYKRLIHSKALKIKLAEGSKGKPGGVSTSSLGFITSLKKLCNHPELIYEKAQMEDEGFEG 481

Query: 53  ------------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ- 90
                               K++ L+ I+   +  +   +++  ++   L   +K   Q 
Sbjct: 482 VLEMFPQKFDLKNVQPELSGKMQVLDYILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQR 541

Query: 91  ---------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      ++ K    +  +N+ K    +      + G GLNL  G N LV F   W
Sbjct: 542 RYQHVRLDGSMSIKKRQKIVDRFNDPKGGDFIFMLSSKAGGCGLNL-IGANRLVMFDPDW 600

Query: 140 DLEEHQQMIERIGVTRQRQAGFKR---AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     Q + R+    Q++         VF+Y L++  TI+E + QR   K  +   +++
Sbjct: 601 NPANDDQAMARVWRDGQKKKAIFDLLLQVFIYRLLSTGTIEEKIFQRQAHKKALSSCVVD 660

Query: 197 ALK 199
             +
Sbjct: 661 EEE 663


>gi|212542839|ref|XP_002151574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
 gi|210066481|gb|EEA20574.1| chromodomain helicase (Chd1), putative [Penicillium marneffei ATCC
           18224]
          Length = 1497

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEK------------- 46
           ++ Y     + Y  L +G N +  +  +  ++  + +N    +   +             
Sbjct: 686 LEYYKNILTKNYAALNEGANGQKQSLLNIMMELKKASNHPFMFPNAEAKLLEGNTRREDL 745

Query: 47  -HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 746 LRIMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGDYMRFRGYQYQRLDGTIS 805

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N  +           + G G+NL    + ++ F   W+ +      +  
Sbjct: 806 AANRRVAMEHFNAPESSDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 859

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++TI+E VL+R R K  +
Sbjct: 860 AMARAHRIGQTRPVSVYRLVSKDTIEEEVLERARNKLML 898


>gi|115462129|ref|NP_001054664.1| Os05g0150300 [Oryza sativa Japonica Group]
 gi|54291826|gb|AAV32194.1| putative ATPase [Oryza sativa Japonica Group]
 gi|113578215|dbj|BAF16578.1| Os05g0150300 [Oryza sativa Japonica Group]
 gi|222630218|gb|EEE62350.1| hypothetical protein OsJ_17139 [Oryza sativa Japonica Group]
          Length = 1158

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++E  N+        +  ++  +  N    +   E        D  I
Sbjct: 523 EMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 582

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
           +    ++             + +++       L  L+                       
Sbjct: 583 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGNTGGEDRD 642

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 643 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 696

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 697 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 739


>gi|158293531|ref|XP_557901.3| AGAP008748-PA [Anopheles gambiae str. PEST]
 gi|157016752|gb|EAL40287.3| AGAP008748-PA [Anopheles gambiae str. PEST]
          Length = 789

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 42/217 (19%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE------------------------KHWKEV 51
           +     +  + S      +L N      E+                        +     
Sbjct: 426 KNATKASLTALSNITSLKKLCNHPDLVYEKIQERADGFENAATILPDNYSPRELRPELGA 485

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
               +  +   I+      I++  ++   L   +K   +            T+ K    +
Sbjct: 486 KLMLLDCMLASIKTNTTDKIVLVSNYTQTLDLFEKLCRKRGYGYVRLDGTMTIKKRGKVV 545

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N+      +      + G GLNL  G N LV F   W+        +   + R  + 
Sbjct: 546 DQFNQPDSADFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRD 599

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+  F+Y L+A  TI+E + QR   K  +   +++
Sbjct: 600 GQKKPCFIYRLLATGTIEEKIFQRQTHKKALSTTVVD 636


>gi|67467805|ref|XP_649984.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56466523|gb|EAL44598.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1247

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 72/225 (32%), Gaps = 37/225 (16%)

Query: 2   KQYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYD---------------E 44
           + Y     +    L    +     N  +  ++  ++ N                     +
Sbjct: 550 QYYRALYEKNREFLNKGCVGSNVPNLQNLMMQLRKVCNHPYLIPGVEEKDTAQFPEGSPD 609

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
             +       K+  L+ ++ K  A+   +++       L  ++K         +      
Sbjct: 610 YFNQLIRSSGKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYERLDGSI 669

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +   ++   +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 670 KSEDRQNAIDRFMNPEMNRFIFLLCTRAGGFGINL-SEADTVIIFDSDWNPQN-----DL 723

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G K+ V VY L+++NT +  + +R   K  +   +L
Sbjct: 724 QAQARCHRIGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVL 768


>gi|311256289|ref|XP_003126577.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Sus
            scrofa]
          Length = 1912

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|291392737|ref|XP_002712922.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 1
            [Oryctolagus cuniculus]
          Length = 1905

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|303324465|ref|XP_003072220.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111930|gb|EER30075.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037260|gb|EFW19198.1| chromodomain helicase hrp1 [Coccidioides posadasii str. Silveira]
          Length = 1520

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +   +             
Sbjct: 708 LEYYKNILTKNYAALNQGAKGQKQSLLNIMMELKKASNHPFMFANAEDRILQGSTRREDA 767

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 768 LRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDILADYMDARGFAYQRLDGTIA 827

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 828 AGPRRLSIEHFNAPDSTDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 881

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++T++E V++R R K  +
Sbjct: 882 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 920


>gi|47213811|emb|CAF92584.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1683

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    + + +     H    
Sbjct: 1071 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFS 1130

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1131 GGIVQGPDLYRASGKFEVLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRL 1190

Query: 96   -------KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        ++ +N+ +    +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1191 DGTTKAEDRGMLLKTFNDPESEYFIFLLSTRAGGLGLNLQS-ADTVVIFDSDWNPHQ--- 1246

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   ++++E +L   + K  +   ++ A
Sbjct: 1247 --DLQAQDRAHRIGQQNEVRVLRLCTVSSVEEKILAAAKYKLNVDQKVIQA 1295


>gi|323348699|gb|EGA82941.1| Ino80p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1374

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K++ L+ ++ K  +    +++ +     +  +++     +              +   
Sbjct: 1183 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1242

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                    +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1243 VHDWQTNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1296

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    +E
Sbjct: 1297 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQE 1338


>gi|301616286|ref|XP_002937591.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Xenopus
            (Silurana) tropicalis]
          Length = 1906

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               + +
Sbjct: 950  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGN 1009

Query: 48   WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1010 SLVKSSGKLMLLQKMLKKLKDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1069

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1070 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1123

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1124 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1165


>gi|30694618|ref|NP_191289.2| INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic
            acid binding [Arabidopsis thaliana]
 gi|238065083|sp|Q8RXS6|INO80_ARATH RecName: Full=DNA helicase INO80 complex homolog 1; Short=AtINO80
          Length = 1507

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
            L  ++  E      +   T +             +         K++ L++++++  A  
Sbjct: 1165 LIQEIDSELPVVQPALQLTHRIFGSC--PPMQSFDPAKLLTDSGKLQTLDILLKRLRAGN 1222

Query: 69   APIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +++       L  L+                   +D+        +   I +      
Sbjct: 1223 HRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1282

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+        +   + R  + G  + V VY LI + T++
Sbjct: 1283 AGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETVE 1336

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L R   K+T+Q L++
Sbjct: 1337 EKILHRASQKNTVQQLVM 1354


>gi|190347873|gb|EDK40225.2| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 40/211 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDEKIKAL 59
           G  I   N  ++  K    +N    +D  +                     +   K+  L
Sbjct: 592 GSQISLLNVMAELKK---ASNHPYLFDGAEERVLGTSTSSANRESVLRGMIMSSGKMVLL 648

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           E ++ +       +++       L  L                G    +   +I  +N  
Sbjct: 649 EQLLTRLRKEGHRVLIFSQMVRMLDILGDYLSIKGYAFQRLDGGIPSSQRRISIDHFNAP 708

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G G+NL    + ++ F   W+ +      +   + R  + G K  V
Sbjct: 709 DSRDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMARAHRIGQKNHV 762

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY  ++++TI+E +L+R R K  ++  +++
Sbjct: 763 SVYRFVSKDTIEEEILERARKKMILEYAIIS 793


>gi|281200598|gb|EFA74816.1| chromo domain-containing protein [Polysphondylium pallidum PN500]
          Length = 2720

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 39/233 (16%)

Query: 4    YHKFQRELYCDLQGENIEAFN--SASKTV-KCLQLANGAVYYDEEKHWKEV--------- 51
            Y     +    L        N    +  + +  ++ N        +              
Sbjct: 1065 YRAILEKNREFLARGVKSKSNLPKLTNIMIQIRKVCNHPFLILGAEDTIIRQEKLKTEEQ 1124

Query: 52   -------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                      K+  ++ +++  KA    +++       L  L+        L +      
Sbjct: 1125 ISELLIRSSSKLVLVDKLLQRLKAEGHKVLIFSQMVESLNILEDYLHYREYLYERLDGSV 1184

Query: 98   -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +I+ + + +    +      S G G+NL    + ++ F   W+ +      + 
Sbjct: 1185 KSEVRQASIERFMDKESDRFVFLLSTRSGGVGINLTS-ADTVILFDSDWNPQS-----DL 1238

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                R  + G    V VY LI +NT ++ + +    K  +  ++LN  K   +
Sbjct: 1239 QAQARCHRIGQTSNVKVYRLITRNTYEQYLFEVATKKLLLDHIVLNNAKNNPM 1291


>gi|149049422|gb|EDM01876.1| chromodomain helicase DNA binding protein 4, isoform CRA_e [Rattus
           norvegicus]
          Length = 940

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 36  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 95

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 96  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 155

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 210 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 251


>gi|149238896|ref|XP_001525324.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|206558165|sp|A5E0W5|INO80_LODEL RecName: Full=Putative DNA helicase ino80
 gi|146450817|gb|EDK45073.1| hypothetical protein LELG_03252 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1575

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+  L+ ++ K       +++ +     +  +++     +              +   
Sbjct: 1310 SGKLAKLDELLVKLKQEDHRVLIYFQMTKMMDLMEEYLTFKQHKYIRLDGSSKLDDRRDL 1369

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  + +I +      + G G+NL    + +VF+   W+       I+   + R  + 
Sbjct: 1370 VHDWQTKPEIFVFLLSTRAGGLGINLTA-ADTVVFYDSDWNPT-----IDSQAMDRAHRL 1423

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ +NTI+E +  R + K  +Q +++  
Sbjct: 1424 GQTRQVTVYRLLTRNTIEERMRDRAKQKEQVQQVVMEG 1461


>gi|313226776|emb|CBY21921.1| unnamed protein product [Oikopleura dioica]
          Length = 1356

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + +Q   G +    +  ++++   +      +I       + V   F S  A       
Sbjct: 942  TRLIQYDCGKLQTLHDLIYQKL---RPNGHRALIFTQMTKMLDVLERFLSYHALTYSRLD 998

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +K    ++ +N + KI  +     S G G+NL  G + ++F+   W+       I
Sbjct: 999  GSTAPEKRIQIMETFNRDPKIFCMILSTRSGGVGVNLT-GADTVIFYDSDWNPT-----I 1052

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-------LKKE 201
            +     R  + G  R V +Y  IA++TI+E +L++   K  + ++ +         LK++
Sbjct: 1053 DAQAQDRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIEEGRFNIEGLKED 1112

Query: 202  TIHV 205
             + V
Sbjct: 1113 QLRV 1116


>gi|159130340|gb|EDP55453.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            fumigatus A1163]
          Length = 1374

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 34/207 (16%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-- 69
              +L+ E   + N  SK     +L               V   KI+    I+++      
Sbjct: 1044 LAELKKE--ASKNIKSKQKYLRRL-----------EKTWVTSAKIEKTLEILQEIQDRED 1090

Query: 70   --PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                I+   F + L              ++     R  D++   ++  +     ++    
Sbjct: 1091 SEKTIIFSQFTALLDLLEVPIVRRGWGYRRYDGSMRPGDRNAAVLEFTDNPDCKIMLVSL 1150

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLNL    + ++ F  +W+       IE   + R  + G  R V ++ ++ Q T+
Sbjct: 1151 KAGNAGLNLVA-ASQVIIFDPFWNP-----YIEDQAIDRAHRIGQMRQVHIHRILVQKTV 1204

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            ++ +L+    K  I D  L+   ++ +
Sbjct: 1205 EDRILELQEKKREIIDGALDEKAQKKV 1231



 Score = 39.0 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 3/54 (5%), Positives = 8/54 (14%), Gaps = 6/54 (11%)

Query: 3   QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
            Y   + +                   N     ++  Q         +      
Sbjct: 821 IYDALESKTQVQFNKYLKANAVGRNYSNILVLLLRLRQACCHPHLMTDFSVEVN 874


>gi|73997446|ref|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 24 [Canis familiaris]
          Length = 1892

 Score = 91.0 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 964  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1023

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1024 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1083

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1084 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1137

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1138 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1179


>gi|224100361|ref|XP_002311847.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851667|gb|EEE89214.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 670

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 76/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 449 QMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 508

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                       
Sbjct: 509 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFSGHQYCRIDGNTGGEDRD 568

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N              + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 569 ASIDAFNRPGSEKFCFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 622

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 623 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 665


>gi|332026198|gb|EGI66340.1| Chromodomain-helicase-DNA-binding protein 1 [Acromyrmex echinatior]
          Length = 1821

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           K Y   ++       G         +  ++  +  N A         +E  +E       
Sbjct: 701 KNYEALRK-------GVKGSTTTFLNIVIELKKCCNHAFLTKPMDAEREKTNEDYLQQLI 753

Query: 61  ------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DP 98
                       ++  +     +++       L  L +   +     +            
Sbjct: 754 RGSGKLVLLDKLLVRLRDTGHRVLIFSQMVRMLDILGEYLQRRHFPFQRLDGSIKGELRK 813

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 814 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 867

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+ + +++E +++R + K  +  L++  +
Sbjct: 868 HRIGQKNKVNIYRLVTKKSVEEEIVERAKQKMVLDHLVIQRM 909


>gi|326912771|ref|XP_003202720.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like
            [Meleagris gallopavo]
          Length = 1922

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 985  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1044

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1045 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1104

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1105 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1158

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1159 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1200


>gi|242824408|ref|XP_002488252.1| SNF2 family helicase/ATPase (Swr1), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218713173|gb|EED12598.1| SNF2 family helicase/ATPase (Swr1), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1663

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 35/189 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ +        ++      
Sbjct: 1336 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRELQAGGHRALIFTQMTK 1379

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYG 128
             L  L++                   +       +N    I        S G G+NL  G
Sbjct: 1380 MLDILEQFLNIHGHRYLRLDGTTKVEQRQMLTDRFNNDNRILAFILSTRSGGLGINLT-G 1438

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1439 ADSVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEFTIESNILRKANQKR 1493

Query: 189  TIQDLLLNA 197
             + D+++  
Sbjct: 1494 MLDDVVIQE 1502


>gi|26340418|dbj|BAC33872.1| unnamed protein product [Mus musculus]
          Length = 1081

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 721 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 780

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 781 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 938


>gi|70992713|ref|XP_751205.1| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus fumigatus
            Af293]
 gi|66848838|gb|EAL89167.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            fumigatus Af293]
          Length = 1376

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 74/207 (35%), Gaps = 34/207 (16%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-- 69
              +L+ E   + N  SK     +L               V   KI+    I+++      
Sbjct: 1046 LAELKKE--ASKNIKSKQKYLRRL-----------EKTWVTSAKIEKTLEILQEIQDRED 1092

Query: 70   --PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                I+   F + L              ++     R  D++   ++  +     ++    
Sbjct: 1093 SEKTIIFSQFTALLDLLEVPIVRRGWGYRRYDGSMRPGDRNAAVLEFTDNPDCKIMLVSL 1152

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLNL    + ++ F  +W+       IE   + R  + G  R V ++ ++ Q T+
Sbjct: 1153 KAGNAGLNLVA-ASQVIIFDPFWNP-----YIEDQAIDRAHRIGQMRQVHIHRILVQKTV 1206

Query: 177  DELVLQRLRTKSTIQDLLLNALKKETI 203
            ++ +L+    K  I D  L+   ++ +
Sbjct: 1207 EDRILELQEKKREIIDGALDEKAQKKV 1233



 Score = 39.0 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 3/54 (5%), Positives = 8/54 (14%), Gaps = 6/54 (11%)

Query: 3   QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
            Y   + +                   N     ++  Q         +      
Sbjct: 821 IYDALESKTQVQFNKYLKANAVGRNYSNILVLLLRLRQACCHPHLMTDFSVEVN 874


>gi|317156009|ref|XP_001825512.2| helicase swr1 [Aspergillus oryzae RIB40]
          Length = 1662

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1331 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1386

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N   +I        S G G+NL  G + ++F+ L W+
Sbjct: 1387 GHRYLRLDGTTKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1445

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1446 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1499


>gi|223460528|gb|AAI36645.1| SMARCA4 protein [Homo sapiens]
          Length = 1681

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 1071 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1130

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1131 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1190

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1191 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 1246

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1247 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1295


>gi|150864264|ref|XP_001383014.2| DNA ATP-dependent helicase [Scheffersomyces stipitis CBS 6054]
 gi|149385520|gb|ABN64985.2| DNA ATP-dependent helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1269

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             K+  L+ ++ +   N   +++ +     +  +++     +              +    
Sbjct: 1032 GKLAKLDELLVELKQNDHRVLIYFQMTRMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDLV 1091

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                 + +I +      + G G+NL    + ++F+   W+       I+   + R  + G
Sbjct: 1092 HDWQTKPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRLG 1145

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1146 QTRQVTVYRLLTRGTIEERMRDRAKQKEQVQQVVMEG 1182


>gi|156552758|ref|XP_001599976.1| PREDICTED: similar to ENSANGP00000008413 [Nasonia vitripennis]
          Length = 1890

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 73/261 (27%)

Query: 3    QYHKFQ-RELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKE-------- 50
             Y  F+ +     +   +       +          + N        KH +         
Sbjct: 1555 LYEDFKQKHSAALINNASSSNPHGGHVFEALRYLRNVCNHPKLVLCTKHPQYQTVMNMLK 1614

Query: 51   ---------VHDEKIKALEVIIEKA--------------------------------NAA 69
                      H  K+ AL+ ++                                   +  
Sbjct: 1615 QQHSSLADIEHSAKLPALKQLLLDCGIGQNSTQQQQQQTAARNTANITESQQQSQLVSQH 1674

Query: 70   PIIVAYHFNSDLARLQK----AFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAH 115
              ++     + L  ++           T  +             +  +N +  I +L   
Sbjct: 1675 RALIFCQLKAMLDIVEHDLLRMHLPTVTYLRLDGSVPAALRHSVVARFNADPSIDVLLLT 1734

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI + T
Sbjct: 1735 TQVGGLGLNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRQT 1788

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E ++   + K    + +++
Sbjct: 1789 VEEKIMGLQKFKLLTANTIIS 1809


>gi|302819699|ref|XP_002991519.1| hypothetical protein SELMODRAFT_429809 [Selaginella moellendorffii]
 gi|300140721|gb|EFJ07441.1| hypothetical protein SELMODRAFT_429809 [Selaginella moellendorffii]
          Length = 1426

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                  +     +   K++AL+++  +  A    ++V       L  L+           
Sbjct: 1119 PPLQTIDFARTLMDSGKLQALDILFRRLRAEEHRVLVFAQMTKMLNILEDYMKYRKYKYL 1178

Query: 91   -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +D+        +   I +      + G G+NL    + ++F+   W+     
Sbjct: 1179 RLDGSSTIMDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTA-ADTVIFYESDWNPT--- 1234

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++   + R  + G  + V VY LI + T++E +++R   K+T+Q L++
Sbjct: 1235 --MDLQAMDRAHRLGQTKEVTVYRLICKGTVEEKIVKRANQKNTVQQLVM 1282


>gi|194211609|ref|XP_001496418.2| PREDICTED: chromodomain helicase DNA binding protein 4 [Equus
            caballus]
          Length = 1912

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|74200625|dbj|BAE24713.1| unnamed protein product [Mus musculus]
          Length = 1261

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 806  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 865

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 866  GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 925

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 926  DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 981

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 982  --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1030


>gi|145522682|ref|XP_001447185.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414685|emb|CAK79788.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1508

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 38/225 (16%)

Query: 3   QYHKFQRELYCDLQGENIE-AFNSASKTV---KCLQLANGAVYYDEEKHWKEV------- 51
            Y          L+    + A N+AS      +  +  N      E ++           
Sbjct: 664 IYKALYERNKSMLEQGFSQWAANAASLNNLEIQLRKCCNHPYLIQEMQNDLTKECQNKND 723

Query: 52  -------HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK------ 96
                     K+  L+ ++ K       +++   F   L+ L++     +   +      
Sbjct: 724 YINKLVESSGKMILLDKLLNKFRNEGKKMLIFSQFTMMLSILEEYLKFRQVKYEKIDGQI 783

Query: 97  ----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +N+      +      + G G+NL     I+V +   W+ +      + 
Sbjct: 784 KARERQNAIDRFNDPSKKREVFLLSTKAGGQGINLTA-AEIVVIYDSDWNPQN-----DV 837

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G  + V VY LI ++T +  + +R   K  +   + 
Sbjct: 838 QATARAHRIGQSKEVTVYRLITKDTYEAEMFERAIKKLGLDQAIF 882


>gi|224128974|ref|XP_002320469.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222861242|gb|EEE98784.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 265

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  +  +  +                +D    +   +    +      +
Sbjct: 114 KGIVFSQFTSFLDLIHYSLQKSGISCVQLVGSMSLAARDAAIKRFAEDPDCKIFLMSLKA 173

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+       +ER    R  + G  + + +   + +NT++E
Sbjct: 174 GGVALNLT-VASHVFLMDPWWNPA-----VERQAQDRIHRIGQYKPIRIVRFVIENTVEE 227

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +LQ    K  + +  +  
Sbjct: 228 RILQLQEKKELVFEGTVGG 246


>gi|207345617|gb|EDZ72381.1| YFR038Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 853

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 83/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                 + +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVSNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|73997448|ref|XP_534909.2| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 1 [Canis familiaris]
          Length = 1912

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|298709602|emb|CBJ49249.1| similar to E1a binding protein P400 (Partial) [Ectocarpus
            siliculosus]
          Length = 2819

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 65   KANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKIPLLF 113
            K      ++    +  L    +     G T  +             +  +N + K+    
Sbjct: 1706 KQGGHKCLIFTQMSRMLDVLEEFLTLHGHTYVRLDGSTGVEKRQRLMDRFNLDPKLFCFI 1765

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                S G G+NL  G + ++F+   W+       ++     R  + G  R V +Y L+  
Sbjct: 1766 LSTRSGGLGINLT-GADTVIFYDSDWNPA-----MDAQAQDRAHRIGQTREVHIYRLVTS 1819

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            ++I+E +L++ + K  +  L++ A
Sbjct: 1820 SSIEENILKKAQQKRHLDFLVMTA 1843


>gi|193785938|dbj|BAG54725.1| unnamed protein product [Homo sapiens]
          Length = 1886

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 958  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1017

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1018 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1077

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1078 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1131

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1132 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1173


>gi|151940802|gb|EDN59189.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 853

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                   +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|58265682|ref|XP_569997.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226229|gb|AAW42690.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 993

 Score = 91.0 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEGKI 109
           +H       E ++  +N    +        L R       G T  K     +  +N+ K 
Sbjct: 612 LHSIYQCTEEKVVVVSNWTSTLDLIQGLCKLKRYNYLRLDGSTPPKQRQELVDRFNKDKG 671

Query: 110 P----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  GG+ L+ F   W+        +   + R  + G KR V
Sbjct: 672 RQESFVFLLSAKAGGVGLNL-IGGSRLILFDSDWNPST-----DLQAMARIHRDGQKRPV 725

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++Y  +  N IDE + QR  TK+ + D +++  + E
Sbjct: 726 YIYRFLTTNAIDEKIYQRQITKTGLSDQMMDQTRTE 761


>gi|238498954|ref|XP_002380712.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus flavus
            NRRL3357]
 gi|220693986|gb|EED50331.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus flavus
            NRRL3357]
          Length = 1662

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1331 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1386

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N   +I        S G G+NL  G + ++F+ L W+
Sbjct: 1387 GHRYLRLDGTTKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1445

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1446 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1499


>gi|194389146|dbj|BAG61590.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 243 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 302

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 303 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 362

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 363 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 418

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 419 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 467


>gi|221053502|ref|XP_002258125.1| atp-dependant helicase [Plasmodium knowlesi strain H]
 gi|193807958|emb|CAQ38662.1| atp-dependant helicase, putative [Plasmodium knowlesi strain H]
          Length = 1759

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 70/206 (33%), Gaps = 40/206 (19%)

Query: 20   IEAFNSASKTVKCLQLANG--AVYY-------------------DEEKHWKEVHDEKIKA 58
            I + +  +     LQ  +    + +                           +   K+ A
Sbjct: 1277 ISSSHRIAVNNNLLQNCSHLEPILHRIKIATRVYHEPFHKQSIIFPLNKDITLGSGKLFA 1336

Query: 59   LEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
            LE ++   K      ++   F   L  L+                  +++    + ++N 
Sbjct: 1337 LEKLLNKCKREGNKCLLFTQFIKMLDILEIFLNHLNYTFIRLDGSTKVEQRQKIVTKFNN 1396

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K I L  +   S   G+NL    N+++F+   W+       I++  + R  + G  + V
Sbjct: 1397 DKSIFLFISSTRSGSIGINLTA-ANVVIFYDTDWNPS-----IDKQAMDRCHRIGQTKDV 1450

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQ 191
             V+  + + T++E + ++   K  + 
Sbjct: 1451 HVFRFVCEYTVEENIWKKQLQKRKLD 1476


>gi|159124373|gb|EDP49491.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1141

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                +   + +   KI+ L  I+  +A     IV   F S L +++    +         
Sbjct: 891  LNPGDNETQVLPSTKIRHLMKILRREAADYKFIVFSVFTSMLDKIEPFLKRAGIGFARYD 950

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  +     +L     +   GLNL    + +V    +W+       +
Sbjct: 951  GSMRNDLREASLDKLRHNSATRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1004

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1005 EEQAIDRVHRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1053



 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    G  ++   +    ++  Q  N     
Sbjct: 643 MNFYKRLEQRTENSLEKMMGGSKVDYAGALVLLLRLRQACNHPDLV 688


>gi|70991923|ref|XP_750810.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66848443|gb|EAL88772.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1141

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                +   + +   KI+ L  I+  +A     IV   F S L +++    +         
Sbjct: 891  LNPGDNETQVLPSTKIRHLMKILRREAADYKFIVFSVFTSMLDKIEPFLKRAGIGFARYD 950

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               R   ++    +  +     +L     +   GLNL    + +V    +W+       +
Sbjct: 951  GSMRNDLREASLDKLRHNSATRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FV 1004

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  +      V +Y +I + T++E +L+    K  + +L +  
Sbjct: 1005 EEQAIDRVHRLNQTVDVKIYKMIIKETVEERILELQDRKRELANLTIEG 1053



 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYY 42
           M  Y + ++     L+    G  ++   +    ++  Q  N     
Sbjct: 643 MNFYKRLEQRTENSLEKMMGGSKVDYAGALVLLLRLRQACNHPDLV 688


>gi|67904180|ref|XP_682346.1| hypothetical protein AN9077.2 [Aspergillus nidulans FGSC A4]
 gi|74680483|sp|Q5ARK3|SWR1_EMENI RecName: Full=Helicase swr1
 gi|40742720|gb|EAA61910.1| hypothetical protein AN9077.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + V   F +  
Sbjct: 1315 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIH 1370

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N    I        S G G+NL  G + ++F+ L W+
Sbjct: 1371 GHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1429

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1430 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1483


>gi|328867660|gb|EGG16042.1| myb domain-containing protein [Dictyostelium fasciculatum]
          Length = 1999

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 72/237 (30%), Gaps = 46/237 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           K Y     + +  L+    +  +  +  ++  +  N        +  +            
Sbjct: 711 KYYRAIYEKNFSFLRKGG-KGPSLLNIMMELRKCCNHPYLIKGAEKSEMADLQIKNGVTA 769

Query: 53  ----------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
                             K+  ++ ++ K  A    +++       L  L          
Sbjct: 770 AGKSAQDAVYERLIQSSGKLVLVDKLLPKLRAGGHKVLIFSQMVMVLDILDDYLTYRGYP 829

Query: 95  DKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +              I  +++      +      + G G+NL    + ++ F   W+ +
Sbjct: 830 HERIDGSIKGNDRQAAIDRFSKKGSDSFVFLLCTKAGGIGINLTA-ADTVIIFDSDWNPQ 888

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 +     R  + G  + V VY L+ +NT ++++  R   K ++  ++L  + 
Sbjct: 889 N-----DLQAQARCHRIGQDKMVKVYRLVTRNTYEKIMFDRASKKLSLDKVVLTKMN 940


>gi|291392739|ref|XP_002712923.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 2
            [Oryctolagus cuniculus]
          Length = 1912

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|302496981|ref|XP_003010491.1| hypothetical protein ARB_03192 [Arthroderma benhamiae CBS 112371]
 gi|291174034|gb|EFE29851.1| hypothetical protein ARB_03192 [Arthroderma benhamiae CBS 112371]
          Length = 1504

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 681 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEEQAGGSTRREDQL 740

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 741 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 800

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 801 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 854

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 855 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 892


>gi|73997420|ref|XP_867825.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 12 [Canis familiaris]
          Length = 1925

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1036

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1037 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1096

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1097 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1150

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1192


>gi|254585925|ref|XP_002498530.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
 gi|238941424|emb|CAR29597.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
          Length = 901

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 35/216 (16%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--------------EVHDEKIKA 58
            ++  + +   +S +      ++ N       + ++K              E +  K++ 
Sbjct: 546 ANIDLQRLNFNSSLALITLLKKICNSPTLIQTDSYYKSSMQNSRISQKYQNEYNSGKLRV 605

Query: 59  LEVIIE----KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEW 104
           L  ++     +  +  ++V  ++   L  ++                    +    +  +
Sbjct: 606 LMKLLNQIKIETTSDKVVVISNYTQTLDIIENLMASAGMSSCRLDGSTPAKQRDAIVNNF 665

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N    I        S G GLNL  G   L+ F   W+       ++   ++R  + G K+
Sbjct: 666 NHNPSIFAFLLSAKSGGVGLNL-IGACRLILFDNDWNPS-----VDLQAMSRIHRDGQKK 719

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             ++Y L+    IDE +LQR   K+ +    L+  K
Sbjct: 720 PCYIYRLVTTGCIDEKILQRQLMKNCLSQKFLSDTK 755


>gi|156839119|ref|XP_001643254.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113856|gb|EDO15396.1| hypothetical protein Kpol_1063p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 849

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 80/217 (36%), Gaps = 36/217 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HD 53
           K Y +    ++ +L+ + ++     +  ++  Q+ +    +       E           
Sbjct: 547 KIYEE---YMHAELKNKKLQ-----NMMMQLRQIVDSTFLFYFPYLNPEEMTLDVLLQTS 598

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ ++ +I         ++V   F + L  L+                   +     I
Sbjct: 599 GKLQTMQDLILPLVKKKHKVLVFSQFTNMLDLLEDWCELNSLESFRIDGTIDSESRKEQI 658

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N+      +      + G G+NL    + +V F   W+ +     ++   + R  + 
Sbjct: 659 EQFNKPGDKHNIFLLSTRAAGLGINL-IAADTVVLFDSDWNPQ-----VDLQAMDRCYRI 712

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V VY L   NT++ ++L R   K  ++ +++ 
Sbjct: 713 GQIKPVVVYRLCCDNTVEHVILTRAANKRKLEKMVIQ 749


>gi|297261645|ref|XP_001107252.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform 8
            [Macaca mulatta]
          Length = 1912

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 984  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1043

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1157

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1158 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199


>gi|73997410|ref|XP_867787.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 7 [Canis familiaris]
          Length = 1766

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 857  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 916

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 917  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 976

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 977  MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1030

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1031 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1072


>gi|46122747|ref|XP_385927.1| hypothetical protein FG05751.1 [Gibberella zeae PH-1]
 gi|84029506|sp|Q4IAK7|SWR1_GIBZE RecName: Full=Helicase SWR1
          Length = 1691

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++ L+ ++ K        ++       L  L++ 
Sbjct: 1363 KRLLQYDCG----------------KLQILDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1406

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1407 LNIHGHKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLT-GADTVIFYD 1465

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1466 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1520

Query: 197  ALK 199
              +
Sbjct: 1521 EGE 1523


>gi|156544560|ref|XP_001602612.1| PREDICTED: similar to chromodomain helicase DNA binding protein
           [Nasonia vitripennis]
          Length = 1837

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           KQY+K    +      +G         +  ++  +  N A      ++ K  ++E     
Sbjct: 689 KQYYKWILTKNFNALRKGNKGSTSTFLNIVIELKKCCNHAFLTKPNENEKRDNNEDYLQQ 748

Query: 60  E-------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                         ++  K     +++       L  L +   +     +          
Sbjct: 749 LIRGSGKLVLLDKLLVRLKETGHRVLIFSQMVRMLDILSEYLQKRHFPFQRLDGSIKGEL 808

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + ++ F   W+ +      +     
Sbjct: 809 RKQALDHFNAPGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQA 862

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K  V +Y L+ +++++E +++R + K  +  L++  +
Sbjct: 863 RAHRIGQKNQVNIYRLVTKSSVEEEIVERAKQKMVLDHLVIQRM 906


>gi|1345773|sp|P40201|CHD1_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|455015|gb|AAB08486.1| DNA-binding protein [Mus musculus]
          Length = 1711

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 721 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 780

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 781 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 938


>gi|114643071|ref|XP_508960.2| PREDICTED: chromodomain helicase DNA binding protein 4 isoform 3 [Pan
            troglodytes]
          Length = 1886

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 958  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1017

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1018 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1077

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1078 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1131

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1132 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1173


>gi|149636559|ref|XP_001513135.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 1
           [Ornithorhynchus anatinus]
          Length = 1807

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 724 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 783

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 784 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 843

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 844 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 897

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 898 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 941


>gi|331230613|ref|XP_003327971.1| SNF2 family ATP-dependent chromatin-remodeling factor snf22 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306961|gb|EFP83552.1| SNF2 family ATP-dependent chromatin-remodeling factor snf22 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1537

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 31/196 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHD-----------EKIKALEVIIEK--ANAAPIIVAY 75
             ++  ++ N    ++E +                   K + L+ ++ K       +++ +
Sbjct: 835  IMQLKKICNHPFTFEEVERTINGPHKPTNDTLWRAAGKFELLDRVLPKLFRTGHRVLMFF 894

Query: 76   HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGL 123
                 +   Q                   ++    ++ +N  +  I L      + G GL
Sbjct: 895  QMTQVMDIFQDYCAYRGIKNLRLDGMTKPEERAELLKTFNHPECGINLFILSTRAGGLGL 954

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NLQ   + ++ F   W+  +     +     R  + G K+ V V  LI   +++E ++ +
Sbjct: 955  NLQT-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQKKEVRVLRLITSKSVEEHIMSK 1008

Query: 184  LRTKSTIQDLLLNALK 199
             + K  +   ++ A +
Sbjct: 1009 AQFKLDMDKKVIQAGR 1024


>gi|289614871|emb|CBI58408.1| unnamed protein product [Sordaria macrospora]
          Length = 908

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K++AL  +I   + N    +V   F   +  L +     +    
Sbjct: 713 CIRSFDLPDGSWMESAKVQALLKLIKQYQKNGDRALVFTRFAKVIEILGECLASEKIEYL 772

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  IP+      S G G+NL    N ++ F    + ++  
Sbjct: 773 SLQGNTDVSERQELINEFNADATIPVFLLTTGSGGTGINLTA-ANKVIIFDQSDNPQD-- 829

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +     R  + G  R V +  LI+++T++ELV +  + K  + + ++ 
Sbjct: 830 ---DIQAENRAHRLGQTRPVEIIRLISKDTVEELVYKACQKKLELANKVVG 877


>gi|256268827|gb|EEU04181.1| Irc5p [Saccharomyces cerevisiae JAY291]
          Length = 853

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                   +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|224058089|ref|XP_002191829.1| PREDICTED: RAD54-like (S. cerevisiae) [Taeniopygia guttata]
          Length = 757

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 45/234 (19%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y  F ++     +L+   I   + +S T    +L N      ++   +E         
Sbjct: 435 ELYKNFLKQAKPVEELKEGKISVSSLSSITSL-KKLCNHPALIYDKCVEEEEGFMGALGL 493

Query: 53  --------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                           K+  L+ I+   +  +   +++  ++   L   +K         
Sbjct: 494 FPSGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRSRRYLY 553

Query: 91  -----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+   
Sbjct: 554 VRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN 612

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 613 -----DEQAMARVWRDGQKKMCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 661


>gi|302813585|ref|XP_002988478.1| hypothetical protein SELMODRAFT_128101 [Selaginella moellendorffii]
 gi|300143880|gb|EFJ10568.1| hypothetical protein SELMODRAFT_128101 [Selaginella moellendorffii]
          Length = 562

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 70/255 (27%)

Query: 2   KQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYD------------ 43
           + Y     +    +          +  FN  S  ++  Q+ N     D            
Sbjct: 285 ELYEDLMEKYEARISEYSSKGTLQMNKFNMLSMLLRLRQMCNHPALLDSDHLFQVEDDDL 344

Query: 44  -------------------------EEKHWKEVHDEKIKA----------LEVIIEKANA 68
                                    E +  +E  D K++           + V+    + 
Sbjct: 345 IVDEDGSEDGSGHQQMREALSKLQLEAQERQEEFDRKVQEIGQSAKLKAAMMVLDMTPHG 404

Query: 69  APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              ++   + S L  ++                 +  K    I+ +  + ++ ++     
Sbjct: 405 EKSLIFSQWTSMLDLIEPQLEEAGIQFSRIDGSMSTRKRVAAIKRFSEDPEVAVMLISLR 464

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL      ++   +WW+        E   + R  + G  R V V   + + T++
Sbjct: 465 AGGCGLNLVA-ATRVLLMDMWWNPTT-----EDQAIDRTHRIGQTRPVHVTRFVVKETVE 518

Query: 178 ELVLQRLRTKSTIQD 192
           E +LQ    K  + +
Sbjct: 519 ERILQIQEEKKKLVE 533


>gi|145611352|ref|XP_368791.2| hypothetical protein MGG_00453 [Magnaporthe oryzae 70-15]
 gi|145018655|gb|EDK02934.1| hypothetical protein MGG_00453 [Magnaporthe oryzae 70-15]
          Length = 901

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
           +  E++ + V   KI+ L  I+  + +    IV   F S L  +   F +          
Sbjct: 679 FAHEENGRVVPSAKIRQLLEILHKEVHEHKFIVFSQFTSMLDLVAPFFDREGFKYTRYEG 738

Query: 91  -GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +   ++       N+ K  +L         GLNL      +V    +W+       +E
Sbjct: 739 SMKNDLREESLHSLRNDPKTRILLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVE 792

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKE 201
              + R  +      V VY L    +++E +L+    K  + +  +   +KK+
Sbjct: 793 EQAIDRVHRLTQTVDVIVYKLTVGKSVEERILELQNKKRMLAEQAIEGGMKKK 845



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           K Y++ +    E    +    +   N+    ++  Q  N     
Sbjct: 394 KFYNRLEERADESLQRMMKGKVNYANALVLLLRLRQACNHPRLV 437


>gi|330793226|ref|XP_003284686.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
 gi|325085384|gb|EGC38792.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
          Length = 2666

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 39/232 (16%)

Query: 4    YHKFQRELYCDLQGENIEAFN--SASKTV-KCLQLANGAVYYD----------------E 44
            Y          L        N    S  + +  ++ N                      E
Sbjct: 914  YRAILERNREFLARGIRHKSNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKISGEDE 973

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                      K+  ++ +++  KA    +++       L  L+          +      
Sbjct: 974  LGELLVRSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSI 1033

Query: 98   -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +I  + + +    +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 1034 KSEVRQASIDRFQDKEANRFVFLLSTRAGGVGINLTT-ADTVILFDSDWNPQS-----DL 1087

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                R  + G    V VY LI +NT +E + +    K  +  ++L+   K+ 
Sbjct: 1088 QAQARCHRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLSTNNKKG 1139


>gi|302660586|ref|XP_003021971.1| hypothetical protein TRV_03919 [Trichophyton verrucosum HKI 0517]
 gi|291185893|gb|EFE41353.1| hypothetical protein TRV_03919 [Trichophyton verrucosum HKI 0517]
          Length = 1500

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY-------------DEEK 46
           ++ Y     + Y  L  G      +  +  ++  + +N    +             +++ 
Sbjct: 681 LELYKNILTKNYDALNHGGKGPKPSLLNIMMELKKASNHPFMFWGPEEQAGGSTRREDQL 740

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
                   K+  L+ ++ K   +   +++       L  L           +        
Sbjct: 741 KALVTSSGKMMVLDQLLTKLKNDGHRVLIFSQMVRMLNILANYMDARGFNYQRLDGTIAA 800

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 I+ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 801 GPRRLAIEHYNAPGSTDFTFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQA 854

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + R  + G  + V VY L++++T++E VL+R R K  +
Sbjct: 855 MARAHRIGQTKPVSVYRLVSKDTVEEEVLERARNKLLL 892


>gi|256052547|ref|XP_002569826.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|227284553|emb|CAY17238.1| chromodomain helicase DNA binding protein, putative [Schistosoma
            mansoni]
          Length = 1966

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 36/207 (17%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYD-------------EEKHWKEVHDEKIKALEVI 62
             G  +   N     +   +  N    +               E         K++ +  +
Sbjct: 1070 GGSQVSLINI---MMDLKKCCNHPFLFPSAAEEAQRMPNGAYEGVGLRKGSGKLELMSKM 1126

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI- 109
            + K       +++       L  L+          +              I  +N     
Sbjct: 1127 LRKLYETKHRVLIFSQMTKMLDLLEDFLDSEGYKFERIDGAVTGQLRQDAIDRFNAPDSL 1186

Query: 110  -PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                     + G G+NL    + ++ +   W+        +    +R  + G    V +Y
Sbjct: 1187 SFAFLLSTRAGGLGINL-ASADTVIIYDSDWNP-----HNDIQAFSRAHRIGQSNKVMIY 1240

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + + T++E V Q  + K  +  L++
Sbjct: 1241 RFVTRGTVEERVTQVAKKKMMLTHLVV 1267


>gi|66813908|ref|XP_641133.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60469158|gb|EAL67154.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2373

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 36/228 (15%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L   G++ +  +  +  ++  +  N        +  +          
Sbjct: 765 KYYRAIYEKNFSFLRKGGKSNQGPSLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQI 824

Query: 53  -------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  ++ ++ K       +++     S L  L           +       
Sbjct: 825 FQKLIQASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIK 884

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +++      +      + G G+NL    + ++ F   W+ +      +  
Sbjct: 885 GNDRQAAIDRFSKPDSDRFVFLLCTRAGGIGINLTA-ADTVIIFDSDWNPQN-----DLQ 938

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V VY L+ +NT + L+  +   K  +   +L  + 
Sbjct: 939 AQARCHRIGQDKMVKVYRLVTKNTYERLMFDKASKKLGLDRAVLTKMN 986


>gi|302853754|ref|XP_002958390.1| hypothetical protein VOLCADRAFT_99672 [Volvox carteri f.
           nagariensis]
 gi|300256270|gb|EFJ40540.1| hypothetical protein VOLCADRAFT_99672 [Volvox carteri f.
           nagariensis]
          Length = 854

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 53/240 (22%)

Query: 3   QYHK-FQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEE--------------- 45
            Y    + +    L  G      N+ +      ++AN      +                
Sbjct: 439 LYSAVLRSKAVASLLYGGGGGEDNTLAVITALRKVANHPDLLLDPSGDAGEATAEGANTG 498

Query: 46  ------------KHWKEVHDEKIKALEVIIE--------KANAAPIIVAYHFNSDLARLQ 85
                       K +      +      ++         +     ++       DL    
Sbjct: 499 RTCSSSCLPSFSKQFTATGSHQAAGKMQVLSLLLSAIAARGERCVVVSTSTATLDLVGQL 558

Query: 86  KAFPQGRTLDK---------DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
               QG T  +             +  +N+ G   +      + G GLNL    +++  +
Sbjct: 559 VCKAQGLTTVRIDGGTSVEGRQTVVDNFNKLGMGQVFLLSTRAGGAGLNLVGACHLV-LY 617

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+    QQ + RI      + G  +  FVY L+   TI+E V QR   K+ +    +
Sbjct: 618 DSDWNPAMDQQAMARIW-----RDGQTKPCFVYRLLTTGTIEEKVYQRQLMKADLASATV 672


>gi|302794564|ref|XP_002979046.1| hypothetical protein SELMODRAFT_444050 [Selaginella moellendorffii]
 gi|300153364|gb|EFJ20003.1| hypothetical protein SELMODRAFT_444050 [Selaginella moellendorffii]
          Length = 1426

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                  +     +   K++AL+++  +  A    ++V       L  L+           
Sbjct: 1119 PPLQTIDFARTLMDSGKLQALDILFRRLRAEEHRVLVFAQMTKMLNILEDYMKYRKYKYL 1178

Query: 91   -----GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +D+        +   I +      + G G+NL    + ++F+   W+     
Sbjct: 1179 RLDGSSTIMDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTA-ADTVIFYESDWNPT--- 1234

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              ++   + R  + G  + V VY LI + T++E +++R   K+T+Q L++
Sbjct: 1235 --MDLQAMDRAHRLGQTKEVTVYRLICKGTVEEKIVKRANQKNTVQQLVM 1282


>gi|221481667|gb|EEE20043.1| DNA excision repair protein ERCC6, putative [Toxoplasma gondii GT1]
          Length = 1553

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 45/223 (20%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDEKIKALEVII--EKANAA 69
            E  +            ++AN             E +       K+  L  ++   KA   
Sbjct: 979  EKRDRCRMLFTLSVLRKIANHPDLLLVHNEVRPEDYGNPERSGKLIVLREVLRVWKAEGR 1038

Query: 70   PIIVAYHFNSDLARLQKAFPQ------------------------------GRTLDKDPC 99
             +++       L  LQ+                                  G  +     
Sbjct: 1039 RVLLFAQTVQMLDILQRFLETCDPSVPSSSSSAPSSTIGGKKGFSFLRLDGGVPVASRHA 1098

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +  +  I  L       G GLNL    + +V F   W+              R  +
Sbjct: 1099 IVDSFQRDSSIFALLLTTRVGGVGLNLTA-ADRVVIFDPDWNPMTDM-----QARERSWR 1152

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G  + V +Y L+   +++E V  R   K  +   +L   ++ 
Sbjct: 1153 IGQSKDVCIYRLLTSGSVEEKVYHRQVFKFFLSQKVLQDPRQR 1195


>gi|237832233|ref|XP_002365414.1| DNA excision repair protein, putative [Toxoplasma gondii ME49]
 gi|211963078|gb|EEA98273.1| DNA excision repair protein, putative [Toxoplasma gondii ME49]
          Length = 1555

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 45/223 (20%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDEKIKALEVII--EKANAA 69
            E  +            ++AN             E +       K+  L  ++   KA   
Sbjct: 991  EKRDRCRMLFTLSVLRKIANHPDLLLVHNEVRPEDYGNPERSGKLIVLREVLRVWKAEGR 1050

Query: 70   PIIVAYHFNSDLARLQKAFPQ------------------------------GRTLDKDPC 99
             +++       L  LQ+                                  G  +     
Sbjct: 1051 RVLLFAQTVQMLDILQRFLETCDPSVPSSSSSAPSSTLGGKKGFSFLRLDGGVPVASRHA 1110

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +  +  I  L       G GLNL    + +V F   W+              R  +
Sbjct: 1111 IVDSFQRDSSIFALLLTTRVGGVGLNLTA-ADRVVIFDPDWNPMTDM-----QARERSWR 1164

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G  + V +Y L+   +++E V  R   K  +   +L   ++ 
Sbjct: 1165 IGQSKDVCIYRLLTSGSVEEKVYHRQVFKFFLSQKVLQDPRQR 1207


>gi|298715287|emb|CBJ27936.1| Chromodomain-helicase-DNA-binding protein 8 [Ectocarpus siliculosus]
          Length = 3661

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 73/250 (29%), Gaps = 60/250 (24%)

Query: 2    KQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
            K Y       +  L        +A +  +  ++  +  N        +  +         
Sbjct: 2234 KYYRAIYERNHSVLNKVGAGAGKAPSLMNIQMELRKCCNHPFMVRGVEDHEVDQIVGNLM 2293

Query: 52   -------------------------------HDEKIKALEVIIEK--ANAAPIIVAYHFN 78
                                              K+  L+ ++ K  +    +++   F 
Sbjct: 2294 AEAQAGDPNKASERLNQRVLKQLRLEKGLIHTSGKMVLLDKLLPKLRSEGHKVLIFSQFI 2353

Query: 79   SDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              L  +Q+                T ++   +I  +N +    +      + G G+NL  
Sbjct: 2354 GMLDMVQEFLSLRGHKHERLDGRTTGNERQKSIDRFNRDPNSFVFLLSTRAGGVGINLTA 2413

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +  + +   W+ +      +   + R  + G  ++V VY LI ++  +  +  R   K
Sbjct: 2414 -ADTCIIYDSDWNPQN-----DVQAMARCHRIGQTKSVMVYRLITRDCFESEMFNRASMK 2467

Query: 188  STIQDLLLNA 197
              ++  +L  
Sbjct: 2468 LGLEQAVLGD 2477


>gi|119499894|ref|XP_001266704.1| chromatin remodeling complex subunit (Chd3), putative [Neosartorya
            fischeri NRRL 181]
 gi|119414869|gb|EAW24807.1| chromatin remodeling complex subunit (Chd3), putative [Neosartorya
            fischeri NRRL 181]
          Length = 1509

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDE-----------EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
             ++  +       Y E                     K+K LE+++ K       +++  
Sbjct: 952  LMQLRKCLCHPFVYSEAIEERTANAAASHKHLVEASGKLKLLEIMLPKLKQRGHRVLIFS 1011

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1012 QFLDNLDIVEDFLDGLGLLHRRLDGRMTSLEKQKRIDEYNADNSPYFAFLLSTRSGGVGI 1071

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + +++E ++Q 
Sbjct: 1072 NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMTRGSVEEKIMQI 1125

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L++ +  E
Sbjct: 1126 GKKKMVLDHVLIDRMVAE 1143


>gi|312066349|ref|XP_003136228.1| SNF2 family domain-containing protein [Loa loa]
 gi|307768614|gb|EFO27848.1| SNF2 family domain-containing protein [Loa loa]
          Length = 1965

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            ++ ++   G +          + D  +     +I    A  + +   F S          
Sbjct: 1330 LRLIEYDCGKLQVL----NSLLRDLFLYKHRCLIFTQMARVLDILQAFLSFHGYQYFRLD 1385

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +++     + +N + KI        S G G+NL  G + ++F+   W+       +
Sbjct: 1386 GTTGIEQRQAMTERFNADPKIFCFILSTRSGGIGVNLT-GADTVIFYDSDWNPT-----M 1439

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G  R V +Y L+++ TI+E +L++   K  + ++ ++ 
Sbjct: 1440 DAQAQDRCHRIGQTRNVTIYRLVSERTIEENILRKAMQKRRLGEMAIDE 1488


>gi|261157174|gb|ACX54781.1| DEAD/DEAH box helicase domain-containing protein PIE1 [Oryza sativa
            Japonica Group]
          Length = 2044

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------- 89
            Y  ++   +    K++ L +++   K+     ++       L  L++             
Sbjct: 1067 YFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLD 1126

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 ++    +Q +N   K  L      S G G+NL  G + ++F+   W+       +
Sbjct: 1127 GSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----M 1180

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1181 DQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1228


>gi|194873165|ref|XP_001973152.1| GG13509 [Drosophila erecta]
 gi|190654935|gb|EDV52178.1| GG13509 [Drosophila erecta]
          Length = 1634

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1022 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1081

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1082 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1141

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1142 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1196

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1197 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|326917893|ref|XP_003205229.1| PREDICTED: DNA repair and recombination protein RAD54B-like
           [Meleagris gallopavo]
          Length = 918

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 81/255 (31%), Gaps = 58/255 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDE-------------- 44
           ++ Y K          LQG    + +         +L N      +              
Sbjct: 563 LELYRKLLSSRVITSCLQGRLENSPH-LICIGALKKLCNHPCLLFKAVKEKSCDPKSDEH 621

Query: 45  ------------------EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLA 82
                                + E    K++ L  ++      +++  +++  ++   L 
Sbjct: 622 VESSLYEGLTDVFPQDYTSDIFSETDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLN 681

Query: 83  R-LQKAFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
              +     G +  +             +  +N    P  +      + G GLNL  G +
Sbjct: 682 ILQETCKRYGYSYTRLDGNTPVSQRQQIVDSFNCKFSPAFIFLLSSKAGGVGLNL-VGAS 740

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   + R  + G K  V +Y L+   +I+E + QR  +K  +
Sbjct: 741 HLILYDIDWNPAT-----DIQAMARVWRDGQKHTVHIYRLLTTGSIEEKIYQRQISKQDL 795

Query: 191 QDLLLNALK-KETIH 204
              +++  K  E IH
Sbjct: 796 SGAVVDLSKTSEHIH 810


>gi|269969347|sp|B6ZLK2|CHD1_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|218117883|dbj|BAH03306.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
          Length = 1719

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 719 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 778

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 779 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 838

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 839 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 892

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 893 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 936


>gi|154334239|ref|XP_001563371.1| DNA excision repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060387|emb|CAM37551.1| putative DNA excision repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1258

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 56/218 (25%)

Query: 28   KTVKCLQLANG-------------------------------------AVYYDEEKHWKE 50
               +  Q+ N                                         +        
Sbjct: 798  LMNQLRQICNHADIYAVQQGADEEDRMMLGRHGAATKSSSASATRSGQHRSFRSNNPVNL 857

Query: 51   VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
            +   K+ AL +++   +     +++       L  ++    Q                  
Sbjct: 858  LGSGKLNALLMMLKEWQLFGHRVLIFSQTRMMLDIIENMCEQHAYRYIRMDGETNGHHRQ 917

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +  +N +  I +        G G+NL  G + +V F   W+      + +     R  
Sbjct: 918  ELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIFDPDWNP-----ITDVQARERAW 971

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 972  RIGQKREVCVYRLITSGSVEEAILRRQLAKMYVTDKVL 1009


>gi|115313218|gb|AAI24095.1| Hells protein [Danio rerio]
          Length = 769

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N A   +                     K   L+ ++ +       +++   
Sbjct: 580 LMLLKRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQ 639

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             S L  L                     D+D    +  ++ ++ L      + G G+NL
Sbjct: 640 MTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINL 699

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +      +     R  + G  + V VY LI  NTIDE +L+R  
Sbjct: 700 TS-ADTVIIFGSDWNPQA-----DLQAQDRCHRIGQTKPVVVYRLITANTIDEKILERAS 753

Query: 186 TKSTIQDLLLN 196
            K  ++ ++++
Sbjct: 754 AKRKLEKMVIH 764


>gi|298710085|emb|CBJ31801.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1032

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   G +  +   TI  +N   KI +      + G G+ L  G + ++     W+ 
Sbjct: 20  LRVCRIDGGHSDLERQHTIARFNANNKISVCLVSTGAGGTGITLT-GADRVILSDPSWNP 78

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +  Q ++R       + G KR V VY +IA  T++E + ++   K  ++  ++    K 
Sbjct: 79  ADDMQAVDR-----AYRIGQKRDVIVYRMIAAGTVEEKMYEKQIFKDGLRRTVMGGTVKR 133

Query: 202 TIHV 205
             +V
Sbjct: 134 KKNV 137


>gi|206558287|sp|A6ZU34|INO80_YEAS7 RecName: Full=Putative DNA helicase INO80; AltName:
            Full=Inositol-requiring protein 80
 gi|151943662|gb|EDN61972.1| inositol requiring protein [Saccharomyces cerevisiae YJM789]
          Length = 1495

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K++ L+ ++ K  +    +++ +     +  +++     +              +   
Sbjct: 1304 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1363

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                    +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1364 VHDWQTNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1417

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    +E
Sbjct: 1418 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQE 1459


>gi|134077223|emb|CAK45564.1| unnamed protein product [Aspergillus niger]
          Length = 841

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 72/210 (34%), Gaps = 28/210 (13%)

Query: 16  QGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKIKALEVIIEK-- 65
             + I      +  ++     N     Y+        +         K+  L+ ++    
Sbjct: 553 GKKEIAQKKMQNPIMQARLACNSPHNFYWPWMDDPTSIDETLVTASGKMLLLDRLVPCLL 612

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQEWNEGKIPLLF 113
                I++   F + L  LQ    Q R+             D+         +    L  
Sbjct: 613 NKGHKILIFSQFKTQLDILQDWATQLRSWNCCRIDGAVSQEDRRAQIKAFNTDKNYKLFL 672

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    + ++ F   W+ ++     +     R  + G  + V VY L  +
Sbjct: 673 LSTRAGGQGINLMA-ADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPVIVYRLATK 726

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            T+++ +L++  +K  ++ L++   K  ++
Sbjct: 727 GTVEQTLLEKADSKRRLERLVIQKGKFRSL 756


>gi|322698671|gb|EFY90439.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1104

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 19/173 (10%)

Query: 46   KHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKA----------FPQGRTL 94
            K  + +   KI+ +  I+  +A     IV   F S L  ++            +      
Sbjct: 883  KQTQVLASAKIREVTKILHAEAKEHKFIVFSQFTSMLDLVEPFLDKDGFEYARYDGSMKN 942

Query: 95   DKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D    +++    +    +L         GLNL      ++    +W+       +E   +
Sbjct: 943  DDREESLRRLREDQSTRVLLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAI 996

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-KKETIHV 205
             R  +      V VY L   +T++E ++     K  + +  +    KKE + +
Sbjct: 997  DRVHRLTQTVDVVVYKLTVADTVEERIIDLQNKKRELAEQTIEGGAKKEAMKL 1049



 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           K Y + +    +    +    +   N+ +  ++  Q  N     
Sbjct: 567 KFYDRLEARADKSMEVMMQNKLSYANAFTLLLRLRQACNHPKLV 610


>gi|19347965|gb|AAL86315.1| putative helicase [Arabidopsis thaliana]
          Length = 744

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
           L  ++  E      +   T +             +         K++ L++++++  A  
Sbjct: 402 LIQEIDSELPVVQPALQLTHRIFGSC--PPMQSFDPAKLLTDSGKLQTLDILLKRLRAGN 459

Query: 69  APIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             +++       L  L+                   +D+        +   I +      
Sbjct: 460 HRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 519

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    + ++F+   W+        +   + R  + G  + V VY LI + T++
Sbjct: 520 AGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETVE 573

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L R   K+T+Q L++
Sbjct: 574 EKILHRASQKNTVQQLVM 591


>gi|115910510|ref|XP_795650.2| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
 gi|115960830|ref|XP_001193156.1| PREDICTED: similar to SD02886p [Strongylocentrotus purpuratus]
          Length = 1571

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------- 90
             +K +      K+  L+ ++ +       +++       +  L++               
Sbjct: 1164 PDKDYLVTDSGKMHVLDDLLSQLKDQGHRVLIYSQMTRMIDILEEFLWHRKHTYMRLDGS 1223

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  D+        +   I +      + G G+NL    + ++F+   W+       +++
Sbjct: 1224 SKISDRRDMVAGFQSRTDIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQ 1277

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + R  + G  + V VY LI + TI+E +L+R R KS +       +KK+ I 
Sbjct: 1278 QAMDRAHRLGQTKQVTVYRLICKGTIEEHILERAREKSEV------RIKKKLIQ 1325


>gi|149035611|gb|EDL90292.1| rCG50332, isoform CRA_c [Rattus norvegicus]
          Length = 568

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +F R+   + +  E   + +S S      +L N      ++   +E          
Sbjct: 242 ELYKRFLRQAKPEEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEGTLGIF 301

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                          K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 302 PPGYNSKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYV 361

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 362 RLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 419

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 420 ----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 468


>gi|149049419|gb|EDM01873.1| chromodomain helicase DNA binding protein 4, isoform CRA_c [Rattus
           norvegicus]
          Length = 977

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 36  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 95

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 96  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 155

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 210 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 251


>gi|297683310|ref|XP_002819326.1| PREDICTED: DNA repair and recombination protein RAD54B-like isoform
           1 [Pongo abelii]
 gi|297683312|ref|XP_002819327.1| PREDICTED: DNA repair and recombination protein RAD54B-like isoform
           2 [Pongo abelii]
          Length = 910

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 556 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTYDKN 614

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 615 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 674

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N     +        + G GLNL  GG+
Sbjct: 675 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGS 733

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 734 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 788

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 789 CGAVVDLTK 797


>gi|125550862|gb|EAY96571.1| hypothetical protein OsI_18476 [Oryza sativa Indica Group]
          Length = 1157

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++E  N+        +  ++  +  N    +   E        D  I
Sbjct: 522 EMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 581

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
           +    ++             + +++       L  L+                       
Sbjct: 582 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYKGYQYCRIDGNTGGEDRD 641

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 642 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 695

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 696 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 738


>gi|73997430|ref|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 17 [Canis familiaris]
          Length = 1910

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 61/227 (26%), Gaps = 39/227 (17%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
            K Y       +  L         +  +  +   +  N    +             K+   
Sbjct: 977  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMVCCASSSPKMPNG 1036

Query: 60   E-------------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                                +   K     +++       L  L+               
Sbjct: 1037 MYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1096

Query: 91   GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G T +     I  +N              + G G+NL    + ++ +   W+        
Sbjct: 1097 GITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HN 1150

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +    +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1197


>gi|327283577|ref|XP_003226517.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Anolis
            carolinensis]
          Length = 1918

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-HDEKIKAL 59
            K Y       +  L         +  +  +   +  N    +           +      
Sbjct: 979  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMFDGS 1038

Query: 60   EVI--------------IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1039 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1098

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N    P         + G G+NL    + ++ +   W+        +    
Sbjct: 1099 MRQEAIDRFNAPGAPQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1152

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1153 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1194


>gi|41052809|dbj|BAD07677.1| putative photoperiod independent early flowering1 [Oryza sativa
            Japonica Group]
          Length = 2021

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP---------- 89
            Y  ++   +    K++ L +++   K+     ++       L  L++             
Sbjct: 1044 YFPDRRLIQFDCGKLQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLD 1103

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 ++    +Q +N   K  L      S G G+NL  G + ++F+   W+       +
Sbjct: 1104 GSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFYDSDWNPA-----M 1157

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ 
Sbjct: 1158 DQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQ 1205


>gi|66800671|ref|XP_629261.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462656|gb|EAL60858.1| chromo  domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3071

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 39/231 (16%)

Query: 4    YHKFQRELYCDLQGENIEAFN--SASKTV-KCLQLANGAVY----------------YDE 44
            Y          L     +  N    S  + +  ++ N                     +E
Sbjct: 1141 YRAILERNREFLSRGIKQKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEE 1200

Query: 45   EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                      K+  ++ +++  KA    +++       L  L+          +      
Sbjct: 1201 LGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSI 1260

Query: 98   -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +I  + +      +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 1261 KSEVRQASIDRFQDKGANRFVFLLSTRAGGVGINLTT-ADTVILFDSDWNPQS-----DL 1314

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                R  + G    V VY LI +NT +E + +    K  +  ++L+  K +
Sbjct: 1315 QAQARCHRIGQTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLSTNKDK 1365


>gi|42742173|ref|NP_116696.2| Irc5p [Saccharomyces cerevisiae S288c]
 gi|84028283|sp|P43610|IRC5_YEAST RecName: Full=Uncharacterized ATP-dependent helicase IRC5; AltName:
           Full=Increased recombination centers protein 5
 gi|285811936|tpg|DAA12481.1| TPA: Irc5p [Saccharomyces cerevisiae S288c]
          Length = 853

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                   +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|328855756|gb|EGG04881.1| hypothetical protein MELLADRAFT_116969 [Melampsora larici-populina
            98AG31]
          Length = 2104

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 72/249 (28%), Gaps = 63/249 (25%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------- 51
                ++      G++  + +         +L N        +  +               
Sbjct: 1789 EGLVKKSKNAANGQDPSSQHVFQALQYLKKLVNHPAMVIRPEVPQHQAIINKLGSKGYRD 1848

Query: 52   --HDEKIKALEVIIEKA----------------------------NAAPIIVAYHFNSDL 81
              H  K+ AL  I+                                   +++       L
Sbjct: 1849 ISHAPKLLALRQILRDCGIGLTTATTLIETVTEDGAGTTTSGGTIPQHRVLIFCQMREML 1908

Query: 82   ARLQKAFPQGRTLD-------------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
              ++    +                  K    +Q +N +  I  L       G GLNL  
Sbjct: 1909 DIIEHDLFKNHMPTVTFMRMDGTTEASKRHDIVQTFNADPSIDCLLLTTHVGGLGLNLT- 1967

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G + ++F    W+      M +   + R  + G K+ V VY LI + T++E ++   R K
Sbjct: 1968 GADTVIFVEHDWNP-----MKDLQAMDRAHRLGQKKVVNVYRLITRATLEEKIMGLQRFK 2022

Query: 188  STIQDLLLN 196
              I   ++N
Sbjct: 2023 LNIATSIVN 2031


>gi|255551667|ref|XP_002516879.1| helicase, putative [Ricinus communis]
 gi|223543967|gb|EEF45493.1| helicase, putative [Ricinus communis]
          Length = 1064

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++E  N+        +  ++  +  N    +   E        D  I
Sbjct: 427 QMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
                ++             + +++       L  L+        L              
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 546

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 547 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 601 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 643


>gi|294674417|ref|YP_003575033.1| SNF2 helicase family protein [Prevotella ruminicola 23]
 gi|294472802|gb|ADE82191.1| SNF2 helicase family protein [Prevotella ruminicola 23]
          Length = 713

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 30/200 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y +    +            +S +    ++  Q      Y     + +            
Sbjct: 514 YKQVHATILQAFASGISGRISSLALEGLLRLRQACIAPKYQTVIDYIETFRS-------- 565

Query: 62  IIEKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
                    +++   F S L           +      G T ++D    Q  ++  I + 
Sbjct: 566 -----EGRKVLLFSQFVSALHELEARLSSADIHFVTLYGDTRNRDIPVRQFQSDSSITVF 620

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    + ++    WW+       +E   + R  + G K  V V  L+ 
Sbjct: 621 LISLKAGGFGLNLTS-ADRVILLDDWWNPA-----VEDQAMARAHRIGQKNNVLVLRLVC 674

Query: 173 QNTIDELVLQRLRTKSTIQD 192
           ++T++E +LQ    K    D
Sbjct: 675 KDTVEEKILQLQAQKRQTVD 694


>gi|240278065|gb|EER41572.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1028

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 18/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
             + +   KI+ L  I++ ++     IV   F S L +++                    
Sbjct: 785 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 844

Query: 96  -KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++    +  N  K  +L     +   GLNL    + +V    +W+       +E   + 
Sbjct: 845 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAID 898

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 899 RVHRLNQTVDVKIYKLTIKNTVEERIVDLQERKRELANATIEG 941



 Score = 39.0 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   +  +NI   ++    ++  Q  N     
Sbjct: 525 YKRLEQRTDKTLERMIGDDNINYASALVLLLRLRQACNHPDLV 567


>gi|195477868|ref|XP_002086420.1| GE23128 [Drosophila yakuba]
 gi|194186210|gb|EDW99821.1| GE23128 [Drosophila yakuba]
          Length = 1634

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1022 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1081

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1082 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1141

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1142 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1196

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1197 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|170115166|ref|XP_001888778.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase [Laccaria
            bicolor S238N-H82]
 gi|164636254|gb|EDR00551.1| SWR1 complex protein, SNF2 family DNA-dependent ATPase [Laccaria
            bicolor S238N-H82]
          Length = 1767

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 70/177 (39%), Gaps = 25/177 (14%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ 90
            LQ+A             +    K++ L  ++         +++       L  L+     
Sbjct: 1485 LQIA------FPHPSLLQYDCGKLQELANLLRDKKAGGHRVLIFTQMTKILDILEIFLNF 1538

Query: 91   G----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         ++      + +N + ++    A   S G G+NL  G + +VF+   +
Sbjct: 1539 HGYLYLRLDGATKIEDRQYITERFNADPRVFCFIASSRSGGVGINLT-GADTVVFYDSDF 1597

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + +     ++R    R  + G  R V +Y  ++Q+T++E +L++   K ++ D+++ 
Sbjct: 1598 NPQ-----MDRQCEDRAHRIGQIRDVHIYRFVSQHTVEEAMLRKANQKRSLDDIVIQ 1649


>gi|164424946|ref|XP_958315.2| hypothetical protein NCU09106 [Neurospora crassa OR74A]
 gi|157070726|gb|EAA29079.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 911

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K++AL  +I   + N    +V   F   +  L +     +    
Sbjct: 716 CIRQFDLPDGSWMESAKVQALLKLIKQYQKNGDRALVFTRFAKVIEILGECLASEKIEYL 775

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I ++N +  IP+      S G G+NL    N ++ F    + ++  
Sbjct: 776 SLQGNTDVSERQELINDFNADATIPVFLLTTGSGGTGINLTA-ANKVIIFDQSDNPQD-- 832

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +     R  + G  R V +  LI+++T++ELV +  + K  + + ++ 
Sbjct: 833 ---DIQAENRAHRLGQTRPVEIVRLISKDTVEELVYKACQKKLELANKVVG 880


>gi|114643073|ref|XP_001162478.1| PREDICTED: chromodomain helicase DNA binding protein 4 isoform 2 [Pan
            troglodytes]
          Length = 1893

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 965  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1024

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1025 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1084

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1085 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1138

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1139 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1180


>gi|109086956|ref|XP_001088870.1| PREDICTED: DNA repair and recombination protein RAD54B isoform 2
           [Macaca mulatta]
          Length = 908

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 56/248 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------- 50
           ++ Y K          LQG    + +         +L N           KE        
Sbjct: 556 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSTCDKNE 614

Query: 51  -----------------------VHDEKIKALEVIIEKANA----APIIVAYHFNSDLAR 83
                                      K++ L  ++   +       +++  ++   L  
Sbjct: 615 EKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNI 674

Query: 84  LQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNI 131
           LQ+   +             + +    +  +N     +        + G GLNL  GG+ 
Sbjct: 675 LQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSH 733

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 734 LILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLC 788

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 789 GAVVDLTK 796


>gi|170094100|ref|XP_001878271.1| SNF2 superfamily chromatin remodeling protein [Laccaria bicolor
            S238N-H82]
 gi|164646725|gb|EDR10970.1| SNF2 superfamily chromatin remodeling protein [Laccaria bicolor
            S238N-H82]
          Length = 1936

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 68/262 (25%), Gaps = 75/262 (28%)

Query: 3    QYHKFQRELYCDLQGENIEAF----------NSASKTVKCLQLANGAVYYDEEKHWK--- 49
             Y  F +        + I+A           +         +L N      +        
Sbjct: 1608 LYDDFSKSKARTSAEDTIQASLSTKPEGGQQHVFQSLQYLRKLCNHPALVLKSNKEVISA 1667

Query: 50   ------------------------------------------EVHDEKIKALEVIIEKAN 67
                                                          E I  +E      +
Sbjct: 1668 ALENANVQGDGLNDIRNAPKLLALKQLLLDCGIGGSAIASADSQKSELIDTVEEPGSSFS 1727

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD-------------KDPCTIQEWN-EGKIPLLF 113
               +++       L  ++    +                  K    +Q +N +  I  L 
Sbjct: 1728 QHRVLIFCQMKQMLDIIESDLFKVHMPSVTYMRLDGATDAGKRHAIVQTFNSDPSIDCLL 1787

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G GL L  G + ++F    W+      M +   + R  + G K+ V VY LI +
Sbjct: 1788 LTTHVGGLGLTLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITK 1841

Query: 174  NTIDELVLQRLRTKSTIQDLLL 195
             T++E ++   R K  I   ++
Sbjct: 1842 GTLEEKIMGLQRFKLNIAHSVV 1863


>gi|157866587|ref|XP_001687685.1| DNA excision repair protein; SNF2 family helicase-like protein
           [Leishmania major strain Friedlin]
 gi|68125299|emb|CAJ03082.1| putative DNA excision repair protein [Leishmania major strain
           Friedlin]
          Length = 1252

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 56/218 (25%)

Query: 28  KTVKCLQLANG-------------------------------------AVYYDEEKHWKE 50
              +  Q+ N                                         +        
Sbjct: 786 LMNQLRQICNHADIYAVQQGADEEDRMMLARRGAAAKLSAISATRPGQHRSFRSNNPVDL 845

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           +   K+ AL +++   ++    ++V       L  ++    Q                  
Sbjct: 846 LGSGKLNALLMMLKEWQSFGHRVLVFSQTRIMLDIIENMCEQQAYSYIRMDGATNSHYRQ 905

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +  +N +  I +        G G+NL  G + +V +   W+      + +     R  
Sbjct: 906 ELMDRFNEDDSIFVALLTTRVGGIGVNL-IGADRVVIYDPDWNP-----ITDVQARERAW 959

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G KR V VY LI   +++E +L+R   K  + D +L
Sbjct: 960 RIGQKREVCVYRLITSGSVEESILRRQLAKMYVTDKVL 997


>gi|150866039|ref|XP_001385507.2| transcriptional regulator [Scheffersomyces stipitis CBS 6054]
 gi|149387295|gb|ABN67478.2| transcriptional regulator [Scheffersomyces stipitis CBS 6054]
          Length = 1414

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G      +  +   +  + +N    +D  ++             
Sbjct: 593 EYYKNIITKNYSALNAGNKGAQISLLNVMSELKKASNHPYLFDGAENRVLAKVGSATRDN 652

Query: 51  ------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                 +   K+  LE ++   K     +++       L  L                G 
Sbjct: 653 ILRGMIMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRILDILGDYLSIKGYQFQRLDGGI 712

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +   +I  +N  +    +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 713 PSAQRRISIDHFNAPESKDFIFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 766

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 767 QAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMILEYAIIS 812


>gi|157818785|ref|NP_001100935.1| chromodomain helicase DNA binding protein 1 [Rattus norvegicus]
 gi|149047090|gb|EDL99810.1| chromodomain helicase DNA binding protein 1 (predicted) [Rattus
           norvegicus]
          Length = 1711

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 721 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 780

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 781 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RRQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 938


>gi|47086607|ref|NP_997881.1| probable global transcription activator SNF2L2 isoform 1 [Danio
            rerio]
 gi|38173711|gb|AAH60676.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Danio rerio]
          Length = 1568

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 979  LYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFP 1038

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++     S +  L+  F          
Sbjct: 1039 NGIISGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRL 1098

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1099 DGTTKSEDRAMLLKKFNEEGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1154

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1155 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1203


>gi|195478527|ref|XP_002086509.1| GE22814 [Drosophila yakuba]
 gi|194186299|gb|EDW99910.1| GE22814 [Drosophila yakuba]
          Length = 611

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 259 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 318

Query: 53  -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                        K + L+ I+ K       +++       +  ++              
Sbjct: 319 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 378

Query: 91  -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 379 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 433

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 434 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 482


>gi|113673906|ref|NP_001038240.1| probable global transcription activator SNF2L2 isoform 2 [Danio
            rerio]
 gi|94732532|emb|CAK04077.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 2 [Danio rerio]
          Length = 1568

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 979  LYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFP 1038

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++     S +  L+  F          
Sbjct: 1039 NGIISGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRL 1098

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1099 DGTTKSEDRAMLLKKFNEEGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 1154

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1155 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1203


>gi|307109767|gb|EFN58004.1| hypothetical protein CHLNCDRAFT_34395 [Chlorella variabilis]
          Length = 1019

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 81/226 (35%), Gaps = 38/226 (16%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + QR+ Y  L  ++++A           +  ++  +  N    +                
Sbjct: 356 EMQRKYYAALLQKDMDAVTGGADRSRLLNIVMQLRKCCNHPYLFQGAEPGPPYLTGDHLV 415

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
            +  K+  L+ ++ K     + +++       +  L+                 + +   
Sbjct: 416 ENAGKMVLLDKLLPKLQSRGSRVLIFSQMTRMIDILEDYCLYRQYGYCRIDGNTSGEDRE 475

Query: 99  CTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N   G   +      + G G+NL Y  +I++ +   W+ +     ++   + R 
Sbjct: 476 SQIDDYNKASGGRFVFLLSTRAGGLGINL-YTADIVILYDSDWNPQ-----MDLQAMDRA 529

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL---VLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+     ++I+E    V+++   K  +  L++   +
Sbjct: 530 HRIGQKKEVQVFRFCTDHSIEEKATCVIEKAYKKLRLDALVIQQGR 575


>gi|190406613|gb|EDV09880.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 853

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                   +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|6321289|ref|NP_011365.1| Ino80p [Saccharomyces cerevisiae S288c]
 gi|1723929|sp|P53115|INO80_YEAST RecName: Full=Putative DNA helicase INO80; AltName:
            Full=Inositol-requiring protein 80
 gi|1322734|emb|CAA96861.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190407095|gb|EDV10362.1| hypothetical protein SCRG_01143 [Saccharomyces cerevisiae RM11-1a]
 gi|256272250|gb|EEU07241.1| Ino80p [Saccharomyces cerevisiae JAY291]
 gi|285812061|tpg|DAA07961.1| TPA: Ino80p [Saccharomyces cerevisiae S288c]
          Length = 1489

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K++ L+ ++ K  +    +++ +     +  +++     +              +   
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1357

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                    +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1358 VHDWQTNPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1411

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    +E
Sbjct: 1412 GQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQE 1453


>gi|302852393|ref|XP_002957717.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
 gi|300257011|gb|EFJ41266.1| hypothetical protein VOLCADRAFT_107785 [Volvox carteri f.
           nagariensis]
          Length = 610

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 23/204 (11%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-------ANA 68
              + E    A ++ + LQL    +        K+    K++ + V+           + 
Sbjct: 226 DASDAEVAVGAERSAQLLQLCGRFMLRRTCGLMKKYLPPKVEQVAVLEMMLKAVREGGSG 285

Query: 69  APIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             +++  ++   L  L+                 ++      +  +N+   P      +S
Sbjct: 286 DKVVLVSNYTEALDVLEVMCRTHGWVSLRLDGSCSVKSRQPIVDTFNDPSHPSFLLLLSS 345

Query: 119 CGHGLNLQYG-GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G+ L     N LV F   W+        +   + R  + G K+ V++Y L+   TI+
Sbjct: 346 KAGGVGLNIIGANRLVLFDPDWNPAN-----DLQAMARVWRQGQKKKVWIYRLLTTGTIE 400

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E V QR   K  +   +++    +
Sbjct: 401 EKVYQRQLAKQGLSAAVVDDTAAQ 424


>gi|302510062|ref|XP_003016991.1| hypothetical protein ARB_05285 [Arthroderma benhamiae CBS 112371]
 gi|291180561|gb|EFE36346.1| hypothetical protein ARB_05285 [Arthroderma benhamiae CBS 112371]
          Length = 1055

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLD- 95
           G                KI+ L  ++++ +     IV   F S L +++     G     
Sbjct: 800 GLSQPMPNVIHDVQTSAKIRHLMRVLKRESGQFKFIVFSVFTSMLDKIEPFLKNGGIGYA 859

Query: 96  ----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     ++    +  N     +L     +   GLNL    + +V    +W+     
Sbjct: 860 RYDGGMRNDLREASLNRLRNSSGTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP---- 914

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +E   + R  +      V VY L  + T++E +L+    K  +    +  
Sbjct: 915 -FVEEQAIDRVHRLNQTVDVKVYKLTIKGTVEERILELQERKRELAKSTIEG 965



 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    R L   + G+NI    +    ++  Q  N     
Sbjct: 563 YQRLEQRADRSLERMIGGQNISYAGALVLLLRLRQACNHPDLV 605


>gi|154279322|ref|XP_001540474.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412417|gb|EDN07804.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1148

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    ++   F             L           +
Sbjct: 933  KNDEWMHSGKVDKLCDLLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 992

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 993  VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1046

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1047 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1088


>gi|300794189|ref|NP_001179884.1| RAD54 homolog B [Bos taurus]
 gi|297482525|ref|XP_002692864.1| PREDICTED: RAD54 homolog B (S. cerevisiae) [Bos taurus]
 gi|296480441|gb|DAA22556.1| RAD54 homolog B [Bos taurus]
          Length = 909

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
            + + EE+  K     K+ A+   +  A    ++  Y    D+ +               
Sbjct: 633 PIMFTEEESGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDG 692

Query: 92  -RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              + +    +  +N       +      + G GLNL  GG+ L+ + + W+        
Sbjct: 693 QTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGGSHLILYDIDWNPAT----- 746

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +   ++R  + G K  V +Y L+   TI+E + QR  +K  +   +++  K
Sbjct: 747 DIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSK 797


>gi|308813301|ref|XP_003083957.1| Swi2/Snf2-related protein DDM1; decrease in DNA methylation 1; CHR1
           (ISS) [Ostreococcus tauri]
 gi|116055839|emb|CAL57924.1| Swi2/Snf2-related protein DDM1; decrease in DNA methylation 1; CHR1
           (ISS) [Ostreococcus tauri]
          Length = 708

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 37/228 (16%)

Query: 5   HKFQRELYCDL-----QGENIEAFNSAS--KTVKCLQLANGA---------VYYDEEKHW 48
                +   +L         I   ++A     ++  +  N                    
Sbjct: 407 DALVNKTMQELLQQVAGSGRIPVGHTAVNNLLMQLRKNCNHPDLITGGLDGSIMFPSADE 466

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K++ L+ +++K  A    ++V       L  L+  F Q              D 
Sbjct: 467 LVEQCGKMQLLDRLMKKLRARGHKVLVFSQMTRMLDLLESYFQQRGENVCRIDGSVKQDD 526

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++N +    +      + G G+NL   G+ ++ +   W+  +     +   + R
Sbjct: 527 RREFIAKFNTDPDYGIFLLSTRAGGLGINLTA-GDTVIIYDSDWNPHQ-----DLQAMDR 580

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKE 201
             + G  + V VY L    +++  +L++  +K  ++ L++     K+E
Sbjct: 581 VHRIGQTKPVHVYRLATAKSVEGKMLKKAASKLALEKLVVTGGGFKQE 628


>gi|26330021|dbj|BAC28749.1| unnamed protein product [Mus musculus]
          Length = 1045

 Score = 90.6 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 729 KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 788

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 789 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 848

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 849 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 902

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 903 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 944


>gi|156399887|ref|XP_001638732.1| predicted protein [Nematostella vectensis]
 gi|156225855|gb|EDO46669.1| predicted protein [Nematostella vectensis]
          Length = 911

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 29/190 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEV----------HDEKIKALEVIIE--KANAAPIIVAYH 76
            +   +  N     +                     K+  L+ ++   K     I++   
Sbjct: 647 LMLLRKCCNHPYLLEYPLDPVTQQYKIDEELVRCSGKMLLLDQMVPALKRRGHKILIFSQ 706

Query: 77  FNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
               L  LQ                 +  D+        ++ +  +      + G GLNL
Sbjct: 707 MTKMLDILQDYCYLRGYQYSRLDGSMKVEDRREEIDAFASDPEKFIFLLSTRAGGLGLNL 766

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + + VY L+  NT+D+ +++R  
Sbjct: 767 -SAADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPILVYRLVTSNTVDQKIVERAA 820

Query: 186 TKSTIQDLLL 195
           +K  ++ +++
Sbjct: 821 SKRKLEKMVI 830


>gi|254304375|ref|ZP_04971733.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324567|gb|EDK89817.1| Snf2 family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 899

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELETKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|303289625|ref|XP_003064100.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226454416|gb|EEH51722.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 743

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 10  ELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVH---------DEKIKA 58
           E+   L G      ++A  +  ++  +  N             +            K + 
Sbjct: 431 EMLQKLSGGVAPVGSTALNNMLMQLRKNCNHPDLISGGLDGSIMFPSAAELVEQCGKFRL 490

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWN- 105
           L+ I++K        ++       L  ++  F Q  +            +    +  +N 
Sbjct: 491 LDRIMKKLRQRGHKTLIFSQMTKMLDLIESYFEQQGSRVCRIDGSVAWQERKEQMDAFNT 550

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +      + G G+NL    + ++ +   W+  +         + R  + G  + V
Sbjct: 551 DPSVDIFLLSTRAGGLGINLTA-ADTVIIYDSDWNPHQDM-----QAMDRCHRIGQTKPV 604

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V  L   ++++  +L R  +K  ++ L++
Sbjct: 605 HVLRLATAHSVEGKMLSRANSKLALEKLVI 634


>gi|225562463|gb|EEH10742.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1181

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    ++   F             L           +
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|195117078|ref|XP_002003076.1| GI24344 [Drosophila mojavensis]
 gi|193913651|gb|EDW12518.1| GI24344 [Drosophila mojavensis]
          Length = 843

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 20/183 (10%)

Query: 34  QLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
           QL N   +Y  +          K + L+ ++ K  A    +++   F   L  +++    
Sbjct: 630 QLCNKYELYDVKIPDNLICESGKFQYLDTLLPKLKAEGHRVLLFSQFTMMLDVVEQYLRI 689

Query: 91  GRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            +             +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 690 RKHGFCRLDGATAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 748

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G  R V +Y LI++NTI+E +L     K  ++  + +  K
Sbjct: 749 NP-----YNDKQAEDRCHRMGQNRPVTIYRLISENTIEEGILMAAEEKLKLEKDITSTEK 803

Query: 200 KET 202
            E 
Sbjct: 804 GEV 806


>gi|126340045|ref|XP_001369474.1| PREDICTED: similar to Mi-2 protein [Monodelphis domestica]
          Length = 1777

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 849  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 908

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 909  ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 968

Query: 96   KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 969  MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1022

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1023 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1064


>gi|115385374|ref|XP_001209234.1| helicase swr1 [Aspergillus terreus NIH2624]
 gi|114196926|gb|EAU38626.1| helicase swr1 [Aspergillus terreus NIH2624]
          Length = 1532

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1199 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1254

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1255 GHRYLRLDGTTKVEQRQILTDRFNNDDRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1313

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1314 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1367


>gi|322799754|gb|EFZ20959.1| hypothetical protein SINV_16592 [Solenopsis invicta]
          Length = 529

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 66/225 (29%), Gaps = 37/225 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
           K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 250 KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETS 309

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                  K+  L  +++K   +   +++       L              +      T  
Sbjct: 310 ALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGA 369

Query: 96  KDPCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +    I  +N          +      + G G+NL    + ++ +   W+        + 
Sbjct: 370 QRQEAIDRFNAPGKYCAQQFVFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDI 423

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 424 QAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 468


>gi|67521594|ref|XP_658859.1| hypothetical protein AN1255.2 [Aspergillus nidulans FGSC A4]
 gi|40746692|gb|EAA65848.1| hypothetical protein AN1255.2 [Aspergillus nidulans FGSC A4]
 gi|259488424|tpe|CBF87846.1| TPA: chromodomain helicase (Chd1), putative (AFU_orthologue;
           AFUA_1G10290) [Aspergillus nidulans FGSC A4]
          Length = 1517

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 688 LEYYKNILTKNYAALNEGTKGQKQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDV 747

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L      +G T  +      
Sbjct: 748 LRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIP 807

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 808 SASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 861

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++T++E V++R R K  +
Sbjct: 862 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 900


>gi|300122317|emb|CBK22889.2| unnamed protein product [Blastocystis hominis]
          Length = 698

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHD 53
           + Y K     Y  +     E  +  +  ++  ++A     +        D        + 
Sbjct: 247 ELYKKVLVNDYESIVNSRAERSHLLNLLMQLRKVAGHPYLFEGVEDRSLDPMGEHVITNC 306

Query: 54  EKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+      +   K   + +++       L  L+                         I
Sbjct: 307 GKMVLLDKLLKRLKEKGSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEI 366

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G G+NL    + ++ +   W+ +     ++     R  + 
Sbjct: 367 NSFNAENSTKFVFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----MDLQAEDRAHRI 420

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY L+ + T++E++++R + K  +  L++   +
Sbjct: 421 GQKKTVNVYRLVTEGTVEEMIVERAKLKLRLDTLVIQQGR 460


>gi|156550287|ref|XP_001603076.1| PREDICTED: similar to CG2684-PA [Nasonia vitripennis]
          Length = 1032

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 72/249 (28%), Gaps = 62/249 (24%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA- 66
            + +        +IEA       ++  Q+             ++  +  I   +  +E   
Sbjct: 775  KAQKVLLEHHSSIEAHEILVLLLRLRQMCCHPALIHAMLDQQDAENMSINQEDEEVEDYV 834

Query: 67   ------------------------------------------NAAPIIVAYHFNSDLAR- 83
                                                          IIV   + S L   
Sbjct: 835  ADYKIDNRVAANLLTKKNPVFDDERRSSKVRAIVKTIEEILEKGDKIIVVSQWTSFLGIV 894

Query: 84   ----------LQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNI 131
                          F     +      + ++N+      +L     + G GLNL  G N 
Sbjct: 895  AKNLDDIEDAKYAMFTGNVAVKNRQAIVDKFNDPNEDTNILLLSLTAGGVGLNL-VGANH 953

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            L+   + W+ +   Q  +RI      + G K+ V+VY  I ++TI+E V      K  I 
Sbjct: 954  LLLIDIHWNPQLESQAQDRI-----YRFGQKKNVYVYKFICKDTIEERVKNLQDKKLEIA 1008

Query: 192  DLLLNALKK 200
            + +L   + 
Sbjct: 1009 NHVLTGSRA 1017


>gi|195033465|ref|XP_001988689.1| GH10438 [Drosophila grimshawi]
 gi|193904689|gb|EDW03556.1| GH10438 [Drosophila grimshawi]
          Length = 843

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 72/183 (39%), Gaps = 20/183 (10%)

Query: 34  QLANGA-VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           QL N   +Y  +  +       K + ++ ++ K  A+   +++   F   L  ++     
Sbjct: 630 QLCNKYELYDVKIPNNLICDSGKFQFMDDLLPKLKADGHRVLLFSQFTMMLDVVEEYLKI 689

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                     G  + +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 690 RKHGFCRLDGGTAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 748

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G  R V +Y LI+++TI+E +L     K  +++ + +  K
Sbjct: 749 NP-----YNDKQAEDRCHRMGQSRPVSIYRLISESTIEEGILMAAEEKLKLEENITSIEK 803

Query: 200 KET 202
            E 
Sbjct: 804 GEV 806


>gi|126273212|ref|XP_001374884.1| PREDICTED: similar to helicase, lymphoid-specific, [Monodelphis
           domestica]
          Length = 824

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                     K   L+ ++ +       +++   
Sbjct: 550 MMLLRKCCNHPYLIEYPLDPVTQEFQINEELVTSSGKFLILDRMLPELKNRGHKVLLFSQ 609

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +  +    + ++N + ++ L      + G G+NL
Sbjct: 610 MTMMLDILMDYCYLRNYSFSRLDGSMSYVEREENMHKFNTDPEVFLFLVSTRAGGLGINL 669

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 670 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 723

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 724 AKRRLEKLIIH 734


>gi|291221939|ref|XP_002730974.1| PREDICTED: helicase, lymphoid specific-like [Saccoglossus
           kowalevskii]
          Length = 905

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 29  TVKCLQLANGAVYYDEE---------KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHF 77
            +   +  N                          K   L+ ++   K     +++    
Sbjct: 630 MMLLRKCCNHPYLLSYPINERNEYIIDEQLVQKSGKCLILDRLLPALKERGHKVLLFSQM 689

Query: 78  NSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
              L  L                    +D+        N+    +      + G GLNL 
Sbjct: 690 TKMLDILGDYCFLRKFKTCRLDGTMSYVDRQEQISTFNNDKDAFIFLLSTRAGGLGLNL- 748

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++ +   W+ +      +     R  + G  + V V+ L+ QNTID+ +++R   
Sbjct: 749 ASADTVIIYDSDWNPQS-----DLQAQDRCHRIGQNKPVTVFRLVTQNTIDQKIVERASA 803

Query: 187 KSTIQDLLLNALK 199
           K  ++ ++++  K
Sbjct: 804 KRKLEKMVIHQGK 816


>gi|290889294|gb|ADD69945.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1808

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 720 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 779

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 780 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 839

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 840 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 893

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 894 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 937


>gi|195327907|ref|XP_002030658.1| GM24456 [Drosophila sechellia]
 gi|194119601|gb|EDW41644.1| GM24456 [Drosophila sechellia]
          Length = 1638

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1026 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1085

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1086 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1145

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1146 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1200

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|157012|gb|AAA19661.1| brahma protein [Drosophila melanogaster]
          Length = 1638

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1026 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1085

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1086 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1145

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1146 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1200

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|24664907|ref|NP_730088.1| brahma, isoform D [Drosophila melanogaster]
 gi|28574896|ref|NP_536745.4| brahma, isoform C [Drosophila melanogaster]
 gi|23093400|gb|AAN11773.1| brahma, isoform C [Drosophila melanogaster]
 gi|23093401|gb|AAN11774.1| brahma, isoform D [Drosophila melanogaster]
 gi|33589348|gb|AAQ22441.1| RE61274p [Drosophila melanogaster]
          Length = 1634

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1022 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1081

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1082 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1141

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1142 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1196

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1197 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|17985967|ref|NP_536746.1| brahma, isoform A [Drosophila melanogaster]
 gi|24664914|ref|NP_730089.1| brahma, isoform B [Drosophila melanogaster]
 gi|19857556|sp|P25439|BRM_DROME RecName: Full=ATP-dependent helicase brm; AltName: Full=Homeotic gene
            regulator; AltName: Full=Protein brahma
 gi|7294205|gb|AAF49557.1| brahma, isoform B [Drosophila melanogaster]
 gi|20152033|gb|AAM11376.1| LD36356p [Drosophila melanogaster]
 gi|23093402|gb|AAF49558.3| brahma, isoform A [Drosophila melanogaster]
          Length = 1638

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1026 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1085

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1086 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1145

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1146 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1200

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1201 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1249


>gi|309366266|emb|CAP21787.2| CBR-SSL-1 protein [Caenorhabditis briggsae AF16]
          Length = 1964

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1312 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADSKVFCFILSTRSGGVGVNLT-GADTVIFY 1370

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1371 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILKKATQKRRLGELAI 1425

Query: 196  NA 197
            + 
Sbjct: 1426 DE 1427


>gi|302691444|ref|XP_003035401.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
 gi|300109097|gb|EFJ00499.1| hypothetical protein SCHCODRAFT_81511 [Schizophyllum commune H4-8]
          Length = 842

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 92  RTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            T  K    + E+N+       +      + G G+NL  G N L+ F   W+    Q   
Sbjct: 650 MTTTKRQKMVDEFNDPNNTEKFVFLLSSKAGGCGINL-IGANRLILFDPDWNPAADQ--- 705

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + R  + G K+  FVY  I+  TI+E + QR   K  +   +++ 
Sbjct: 706 --QALARVWRDGQKKECFVYRFISTGTIEEKIFQRQANKQALSSSVVDE 752


>gi|297817054|ref|XP_002876410.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297322248|gb|EFH52669.1| hypothetical protein ARALYDRAFT_907192 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1507

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
            L  ++  E      +   T +             +         K++ L++++++  A  
Sbjct: 1165 LIQEIDSELPLVQPALQLTHRIFGSC--PPMQSFDPAKLLTDSGKLQTLDILLKRLRAGN 1222

Query: 69   APIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +++       L  L+                   +D+        +   I +      
Sbjct: 1223 HRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1282

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+        +   + R  + G  + V VY LI + T++
Sbjct: 1283 AGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETVE 1336

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L R   K+T+Q L++
Sbjct: 1337 EKILHRASQKNTVQQLVM 1354


>gi|218188229|gb|EEC70656.1| hypothetical protein OsI_01941 [Oryza sativa Indica Group]
          Length = 1259

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                       
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    +++V +   W+ +      +     R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQA-----DLQAQDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 685



 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVF 134
           +                 +    +I+ +N+      +      + G G+NL    +++V 
Sbjct: 828 YLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVL 886

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+ +      +     R  + G K+ V V+    + TI+E V++R   K  +  L+
Sbjct: 887 YDSDWNPQA-----DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALV 941

Query: 195 LNALK 199
           +   +
Sbjct: 942 IQQGR 946


>gi|145484966|ref|XP_001428492.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395578|emb|CAK61094.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1405

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 72/222 (32%), Gaps = 35/222 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD--------- 53
            Y + +  L      +  +  +  +  +   +L N  +   E                  
Sbjct: 713 LYERNKSALIQGFSQQTAQIASLNNLDMHLRKLCNHPLLLKEMHSDILEKSKGNEGEYQK 772

Query: 54  ------EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------- 96
                  K+  L+ +++K       +++   F + LA L++     +   +         
Sbjct: 773 ILIEYSGKMVLLDKMLKKFLKEDKKMLIFSQFTNMLALLEEYLQFNQIKYEKITGDIKQI 832

Query: 97  -DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N+ K    +      + G G+NL     I+V F   W+ +      +    
Sbjct: 833 DRQNAIDRFNDQKKGRQVFLLSTKAGGQGINLTA-AEIVVIFDSDWNPQN-----DIQAT 886

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  + V VY  I +NT +  + +R   K  +   + 
Sbjct: 887 ARAHRIGQDKQVTVYRFITKNTYEAKMFERAFAKLGLDQAIF 928


>gi|224089288|ref|XP_002186536.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1650

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 567 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 626

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 627 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 686

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 687 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 740

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 741 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 784


>gi|67478494|ref|XP_654639.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471706|gb|EAL49253.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1262

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 68/200 (34%), Gaps = 25/200 (12%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-------AAPIIVA 74
             +  +  ++  +L N  +  +E  + +   +      ++I+              +++ 
Sbjct: 633 KTSLMNICMELKKLCNHPILINELMNSENEENLIQSCGKMILLDKLLVKLKETGHRVLIF 692

Query: 75  YHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN--EGKIPLLFAHPASCGHG 122
                 L  L           +              +  +N  +    +      + G G
Sbjct: 693 SQMVRMLDVLSNYLHFRGFNYQRLDGAMGREARQRAMDHFNAKDSTDFVFLLSTRAGGLG 752

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL    + ++ +   W+ +      +     R  + G ++ V +Y L  + TI+E +L 
Sbjct: 753 INLTT-ADTVIIYDSDWNPQN-----DLQAQARCHRIGQEKTVNIYRLATEGTIEEKILL 806

Query: 183 RLRTKSTIQDLLLNALKKET 202
             + K  +  L++  ++K+ 
Sbjct: 807 SAKKKLVLDHLIIQTMEKKG 826


>gi|242051170|ref|XP_002463329.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
 gi|241926706|gb|EER99850.1| hypothetical protein SORBIDRAFT_02g041910 [Sorghum bicolor]
          Length = 1685

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 2    KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Y       + +L         +  +  V+  +  N    ++   H         +   
Sbjct: 799  QYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGDRNKV 858

Query: 61   VIIEKANA----------------APIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
              I  ++                   +++       L  L +         +        
Sbjct: 859  ERIVMSSGKLVLLDKLLVRLRETNHRVLIFSQMVKMLDILAEYLSLRGFQFQRLDGSTRA 918

Query: 98   ---PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  ++ +N              + G G+NL    + ++ F   W+ +      +   
Sbjct: 919  DLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQA 972

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  E 
Sbjct: 973  MSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEG 1022


>gi|302504563|ref|XP_003014240.1| SWI/SNF family DNA-dependent ATPase, putative [Arthroderma benhamiae
            CBS 112371]
 gi|291177808|gb|EFE33600.1| SWI/SNF family DNA-dependent ATPase, putative [Arthroderma benhamiae
            CBS 112371]
          Length = 1171

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 997  SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRND 1056

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1057 SVLDFTDNPDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1110

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1111 IGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALDE 1149


>gi|73997412|ref|XP_867794.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 8 [Canis familiaris]
          Length = 1883

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 31/219 (14%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
            K Y       +  L         +  +  +   +  N    +  E               
Sbjct: 961  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVEAPKMPNGMYDGSALI 1020

Query: 51   --VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
                   +    +   K     +++       L  L+               G T +   
Sbjct: 1021 RASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQ 1080

Query: 99   CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N              + G G+NL    + ++ +   W+        +    +R 
Sbjct: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRA 1134

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1135 HRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1173


>gi|255947258|ref|XP_002564396.1| Pc22g03550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591413|emb|CAP97643.1| Pc22g03550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1454

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 87/234 (37%), Gaps = 40/234 (17%)

Query: 2    KQYHKFQR---ELYCDLQGENIEAFNSASK------TVKCLQLANGAVYYDEEKHWKEVH 52
            K Y    +   +L   +  +   A   A +       ++  +       Y+ +   + + 
Sbjct: 884  KLYRSILKKNPQLIKAICKKQTGALKKAERHNLNNILIQLRKCLCHPYIYNRDIEEQTID 943

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
                         K++ L +++ +  A    +++   F  +L  ++          +   
Sbjct: 944  PQLSHHRLVEASGKLRLLNLMLPQLRARGHRVLIFSQFLENLDIVEDFLAGLELKYRRLD 1003

Query: 98   --------PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                      +I E+N    P         S G G+NL    + ++     ++ ++    
Sbjct: 1004 GRMSSREKQKSIDEFNAPDSPFFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPKQDM-- 1060

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 ++R  + G K  V V++L+ + +++E ++Q+ ++K  +  +L++ ++ +
Sbjct: 1061 ---QALSRAHRIGQKNTVLVFHLVVRASVEEKIMQKGKSKMALDHVLIDRIEAD 1111


>gi|209876524|ref|XP_002139704.1| helicase SWR1 protein [Cryptosporidium muris RN66]
 gi|209555310|gb|EEA05355.1| helicase SWR1 protein, putative [Cryptosporidium muris RN66]
          Length = 1446

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKI 109
            +H+ K      II    +  + +   F +           G  +D     +  +N + ++
Sbjct: 1117 LHNLKKGDHRCIIFTQMSKMLDILEAFINFHGYTYLRLDGGTKVDARQKLVDRFNKDRRL 1176

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L  +   S G GLNL  G + ++F+   W+       ++R  + R  + G  R V +Y 
Sbjct: 1177 FLFISSTRSGGVGLNLT-GADTVIFYDSDWNPA-----MDRQAMDRCHRIGQTRDVHIYR 1230

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+++ TI+E + ++   K  + D++++
Sbjct: 1231 LLSEWTIEENIFRKQLQKRLLDDVVVD 1257


>gi|149642515|ref|XP_001505934.1| PREDICTED: similar to helicase, lymphoid-specific [Ornithorhynchus
           anatinus]
          Length = 823

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 29  TVKCLQLANGAVYY----------DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N                +       +  K   L+ ++ +       +++   
Sbjct: 549 MMLLRKCCNHPYLIEYPLDPATQEFQVDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 608

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L                  +       + ++N + ++ +      + G G+NL
Sbjct: 609 MTMMLDILMDYCYLRSFSFSRLDGSMSYAAREENMHKFNTDPEVFIFLVSTRAGGLGINL 668

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ +      +     R  + G  + V VY L+  NT+D+ +++R  
Sbjct: 669 TA-ADTVIIYDSDWNPQS-----DLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAA 722

Query: 186 TKSTIQDLLLN 196
            K  ++ L+++
Sbjct: 723 AKRKLEKLIIH 733


>gi|150865383|ref|XP_001384576.2| transcriptional accessory protein involved in TBP (TATA-binding
            protein) regulation helicase MOT1 [Scheffersomyces
            stipitis CBS 6054]
 gi|149386639|gb|ABN66547.2| transcriptional accessory protein involved in TBP (TATA-binding
            protein) regulation helicase MOT1 [Scheffersomyces
            stipitis CBS 6054]
          Length = 1901

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 70/259 (27%)

Query: 2    KQYHKF---QRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            K Y  F   Q+    +    +GE     +         +L N         H K      
Sbjct: 1563 KLYKDFAQKQKSTVQEEVSKEGEQGAKQHVFQALQYMRKLCNHPALVLNPDHPKYAEVTQ 1622

Query: 51   ------------VHDEKIKALEVIIEKA---------------------------NAAPI 71
                         H  K+ +L+ ++ +                            +    
Sbjct: 1623 YLASRKSDLKSIEHSPKLLSLQALLLECGIGVNDSDYSKSKRKQQQSLISSEGVISEHRA 1682

Query: 72   IVAYHFNSDLARLQ------------KAFPQGRTLDK-DPCTIQEWN-EGKIPLLFAHPA 117
            ++       L  ++                 G T  +     ++++N +  I +L     
Sbjct: 1683 LIFCQLKDMLDIVENELLKKYMPSVTYMRMDGSTDPRDRQGIVRKFNEDPSIDVLLLTTK 1742

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              G GLNL  G + ++F    W+      M +   + R  + G  + V VY LI ++T++
Sbjct: 1743 VGGLGLNLT-GADTVIFVEHDWNP-----MSDLQAMDRAHRLGQTKVVNVYRLITKDTLE 1796

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            E ++   + K  I   ++N
Sbjct: 1797 EKIMGLQKFKINIASTIVN 1815


>gi|73952004|ref|XP_856319.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 6 [Canis familiaris]
          Length = 1573

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 722 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 781

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 782 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 841

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 842 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 895

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 896 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 939


>gi|328863716|gb|EGG12815.1| hypothetical protein MELLADRAFT_46455 [Melampsora larici-populina
           98AG31]
          Length = 1261

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 31/196 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHD-----------EKIKALEVIIEK--ANAAPIIVAY 75
            ++  ++ N    ++E +      D            K + L+ ++ K  A    +++ +
Sbjct: 646 IMQFKKICNHPFTFEEVERTINGPDKPTNDTLWRAAGKFELLDRVLPKLFATGHRVLMFF 705

Query: 76  HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGL 123
                +   Q                   ++    ++ +N  +  +        + G GL
Sbjct: 706 QMTQVMDIFQDYCAYRGIKNLRLDGMTKPEERADLLKTFNHPQCDIHLFILSTRAGGLGL 765

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   + ++ F   W+  +     +     R  + G K+ V V  LI   +++E ++ +
Sbjct: 766 NLQT-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQKKEVRVLRLITSKSVEEHIMSK 819

Query: 184 LRTKSTIQDLLLNALK 199
            + K  +   ++ A +
Sbjct: 820 AQFKLDMDKKVIQAGR 835


>gi|326483055|gb|EGE07065.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton equinum CBS
            127.97]
          Length = 1168

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 994  SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRND 1053

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1054 SVLDFTDNPDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1107

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1108 IGQLRPVMVHRLLVENTVEDRIIALQDKKRQIIEGALDE 1146


>gi|302753248|ref|XP_002960048.1| hypothetical protein SELMODRAFT_139206 [Selaginella moellendorffii]
 gi|300170987|gb|EFJ37587.1| hypothetical protein SELMODRAFT_139206 [Selaginella moellendorffii]
          Length = 551

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 32  CLQLANGA---VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
             +L         + + +    +   K + L  ++          ++   +   L  L+ 
Sbjct: 352 LHKLCCTHGMLASHSKLRDKDALESAKCQLLVKLLPHLQSAGHRPLIFSQWTGMLDILEW 411

Query: 87  AFPQGRTLDKD----------PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +              + ++N+   I        + G GLNL  G + ++  
Sbjct: 412 VLQVMNLSYRRLDGSTQVCERQSLVDDFNKELDIFAFLLSTRAGGQGLNLT-GADTVIIH 470

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++ +     ++R    R  + G  ++V VY L+ ++T+DE +    + K  + D +L
Sbjct: 471 DVDFNPQ-----MDRQAEDRCHRIGQSKSVTVYRLVTKSTVDENIFGIAQRKLVL-DAVL 524

Query: 196 NA 197
             
Sbjct: 525 EG 526


>gi|239985588|ref|NP_031716.2| chromodomain-helicase-DNA-binding protein 1 [Mus musculus]
 gi|109732363|gb|AAI15823.1| Chromodomain helicase DNA binding protein 1 [Mus musculus]
 gi|148688507|gb|EDL20454.1| chromodomain helicase DNA binding protein 1 [Mus musculus]
          Length = 1711

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 721 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 780

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 781 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 938


>gi|308163310|gb|EFO65660.1| DNA-dependent ATPase, putative [Giardia lamblia P15]
          Length = 1276

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 74/211 (35%), Gaps = 27/211 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKAL 59
             + L       +I   +  +  ++  + A+    ++  +               K+  L
Sbjct: 443 LDKVLRSKSNTSSIGKTSLINIVMQLRKCADHPYLFNGVEPQPFKEGDHIVNVSGKMVVL 502

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEG 107
           + +I +       ++V     S L  +                   L+     +Q +N  
Sbjct: 503 DKLITRIKAINEKVLVFCQMTSMLNIIEDYLRYREYLYCRIDGSTDLETRAKYMQMFNTP 562

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      +   GLNL    N ++ +   ++ +      +   V R  +    + V
Sbjct: 563 TNPVFVFLLSTRAGCLGLNLTA-ANHVIIYQQDFNPQA-----DLQAVARAYRLLQTKEV 616

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           FVY L+A+NT+D  + +R + K  + +L++ 
Sbjct: 617 FVYRLLAENTVDTRIYERAQLKLGLDNLIIQ 647


>gi|303391164|ref|XP_003073812.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302960|gb|ADM12452.1| SNF2 DNA/RNA helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 823

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHDE 54
           + Y    +     L           +  ++  +  N    + +              +  
Sbjct: 293 EWYKMLLKRDLSPLGSTRDPKGMLMNVVMQLRKCCNHPYLFPDAEPEPYTNDKHIIENSG 352

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++E  +A  + +++    +  L  L+                 +       I 
Sbjct: 353 KMIVLDKLLESLRARGSRVLIFSQMSMMLDILEDYAMFKEYEYCRIDGSTSYKDRTEAID 412

Query: 103 EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N       +      + G G+NL    + ++ F   W+ +     ++     R  + G
Sbjct: 413 AFNAEGSEKFIFLLTTRAGGLGINL-STADTVILFDSDWNPQ-----MDLQAQDRAHRIG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V+ LI++NT++E ++ R   K  + D+LL  
Sbjct: 467 QKKQVVVFRLISENTVEERIVYRSLQKLKLDDILLQG 503


>gi|121709100|ref|XP_001272308.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus clavatus
            NRRL 1]
 gi|119400457|gb|EAW10882.1| SNF2 family helicase/ATPase (Swr1), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1687

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1352 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1407

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1408 GHRYLRLDGTTKVEQRQILTDRFNNDDRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1466

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1467 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRLLDDVVIQEGE 1520


>gi|545018|gb|AAC60670.1| homeotic gene regulator [Mus sp.]
          Length = 1022

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 415 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 474

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 475 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 534

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 535 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 590

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 591 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 639


>gi|12853471|dbj|BAB29753.1| unnamed protein product [Mus musculus]
          Length = 473

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 63  KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 122

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 123 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 182

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 183 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 236

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 237 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 280


>gi|45384402|ref|NP_990272.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
 gi|2501846|gb|AAC60282.1| chromo-helicase-DNA-binding on the Z chromosome protein [Gallus
           gallus]
          Length = 1808

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 720 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 779

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 780 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 839

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 840 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 893

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 894 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 937


>gi|258573753|ref|XP_002541058.1| hypothetical protein UREG_00572 [Uncinocarpus reesii 1704]
 gi|237901324|gb|EEP75725.1| hypothetical protein UREG_00572 [Uncinocarpus reesii 1704]
          Length = 1290

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 68/209 (32%), Gaps = 31/209 (14%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
           +  E  N  +  ++  +       Y      + V+   +                 +   
Sbjct: 743 KQSERHNLNNILIQLRKCLCHPFVYSNAIEERGVNSTLLHRNLVEASSKLQLLELLLPKL 802

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
           +     +++   F   L  ++                 +  +    I ++N    P    
Sbjct: 803 QERGHRVLIFSQFLGFLDIIEDFLDGLGLLHLRLDGSLSSLQRQKRIDQFNAPNSPYFTF 862

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++     ++  +     +   ++R  + G +R V V+ L+ 
Sbjct: 863 LLSTRAGGVGINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQQRKVLVFQLMT 916

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + T++E ++Q  R K  +   L+  +  E
Sbjct: 917 KGTVEEKIIQIGRKKMALDQALIGFMDAE 945


>gi|268571107|ref|XP_002640935.1| C. briggsae CBR-SSL-1 protein [Caenorhabditis briggsae]
          Length = 1874

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1251 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADSKVFCFILSTRSGGVGVNLT-GADTVIFY 1309

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1310 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILKKATQKRRLGELAI 1364

Query: 196  NA 197
            + 
Sbjct: 1365 DE 1366


>gi|301097967|ref|XP_002898077.1| chromodomain protein, putative [Phytophthora infestans T30-4]
 gi|262105438|gb|EEY63490.1| chromodomain protein, putative [Phytophthora infestans T30-4]
          Length = 1004

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 45/239 (18%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y     +    L   G   +  +  +  ++  +  N        +  +          
Sbjct: 574 QYYRAIYEKNTEFLSRGGRKGDTPSLMNVLMELRKCCNHPFLVKGVEEREVKRLAKQANV 633

Query: 53  ----------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA------- 87
                             K+  L+ ++   K     +++   F   L  +Q         
Sbjct: 634 SKEEIQRQISESLVDTSGKLVLLDKLLPRLKETGHRVLIFSQFKIMLDIIQDYLALRRYN 693

Query: 88  ---FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                   T ++    I  +   +    ++     + G G+NL    + ++ +   W+ +
Sbjct: 694 CERIDGNITGNERQSAIDRFCREDSNSFIMLLSTRAGGVGINLTA-ADTVIIYDSDWNPQ 752

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +     R  + G K++V +Y L+   T +  +  +   K  +   +L  +K +
Sbjct: 753 N-----DLQAQARCHRIGQKKSVKIYRLLTAKTYELHMFHKASLKLGLDQAVLGGIKSD 806


>gi|148667386|gb|EDK99802.1| mCG144495 [Mus musculus]
          Length = 680

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 371 KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 430

Query: 61  VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 431 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 490

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 491 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 544

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 545 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 586


>gi|19074741|ref|NP_586247.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
 gi|19069383|emb|CAD25851.1| similarity to THE ATPase COMPONENT OF THE TWO-SUBUNIT CHROMATIN
           REMODELING FACTOR [Encephalitozoon cuniculi GB-M1]
          Length = 823

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEVHDE 54
           + Y    +     L           +  ++  +  N    + +              +  
Sbjct: 293 EWYRMLLKRDLSPLGSTRDPKGMLMNVVMQLRKCCNHPYLFPDAEPKPYTNDKHIIENSG 352

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+  L+ ++   KA  + +++    +  L  L+                 +       I 
Sbjct: 353 KMIVLDKLLASLKAKGSRVLIFSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRTEAID 412

Query: 103 EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N       L      + G G+NL    + ++ F   W+ +     ++     R  + G
Sbjct: 413 GFNAEGSEKFLFLLTTRAGGLGINL-STADTVILFDSDWNPQ-----MDLQAQDRAHRIG 466

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K+ V V+ LI++NT++E ++ R   K  + D+LL  
Sbjct: 467 QKKQVVVFRLISENTVEERIVYRSLQKLKLDDILLQG 503


>gi|83767491|dbj|BAE57630.1| unnamed protein product [Aspergillus oryzae]
          Length = 1103

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-----------LQK 86
              Y        V   KI+    I+   +      I+   F S L              ++
Sbjct: 905  RKYLRRLEKTWVSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRR 964

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  D++   +   +     ++     +   GLNL    + ++ F  +W+      
Sbjct: 965  YDGSMKPGDRNSAVLDFTDSPDCKIILVSLKAGNSGLNLVA-ASQVIIFDPFWNP----- 1018

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             IE   + R  + G  R V ++ ++ QNT+++ +L+    K  + +  L+    + I
Sbjct: 1019 YIEEQAIDRAHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALDENASKNI 1075



 Score = 38.2 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 6/51 (11%)

Query: 1   MKQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDEE 45
           ++ Y   +          L+   +     N     ++  Q         + 
Sbjct: 669 LELYSSLEARTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDF 719


>gi|67475316|ref|XP_653352.1| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|56470295|gb|EAL47966.1| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 884

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 64/212 (30%), Gaps = 36/212 (16%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------VHDEKIKALEVI------- 62
           +G++ +            +++N      +            +          +       
Sbjct: 552 KGKDEKKSCQFQILTALKKVSNHPWLIQDFVKTFPEVLDGILPKGDALWDMELSGKTAFL 611

Query: 63  -----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEG 107
                  + +   I++  ++   L  +     +               K    +  +N  
Sbjct: 612 AKLLAFLRKHKEKIVIVSNYTETLNFIAHHCKKCGYPYIQLDGSVAATKRTQMVNRFNNP 671

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           ++   +      + G GLNL  G N++  F   W+        +   + R  + G K+  
Sbjct: 672 ELDEFIFLLSSKAGGCGLNLVGGANLV-MFDPDWNPAN-----DEQAMGRVWRDGQKKKC 725

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y  ++  T++E + QR   K  +   ++  
Sbjct: 726 HIYRTLSAGTVEEKMYQRQIKKLELAGKVVEG 757


>gi|302780671|ref|XP_002972110.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
 gi|300160409|gb|EFJ27027.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
          Length = 1011

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 52/239 (21%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------------ 44
           + +   LQ +   A    +      +L +      +                        
Sbjct: 389 KNVRLALQDKAKRAR-VLASITALKKLCSHPKLIYDTVRAGGSEAAGFENCMQFFPKEMQ 447

Query: 45  --EKHWKEVHDEKIKALE-------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
                  +    K+             + K     I++  ++   L    +   +     
Sbjct: 448 TGRGTPSDGSWVKLSGKMFVLARLLENLRKKTNDRIVLVSNYTQTLDLFAQLCRERNYPY 507

Query: 96  ----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    +Q++N+             + G GLNL  GGN LV F   W+   
Sbjct: 508 VRLDGSTSIGKRQKLVQKFNDPSQNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPAN 566

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                ++    R  + G K+ V++Y  +A  TI+E V QR  +K  +Q ++    K E 
Sbjct: 567 -----DKQAAARVWRDGQKKRVYIYRFLATGTIEEKVYQRQMSKEGLQKVISGDSKAEV 620


>gi|115491355|ref|XP_001210305.1| hypothetical protein ATEG_00219 [Aspergillus terreus NIH2624]
 gi|114197165|gb|EAU38865.1| hypothetical protein ATEG_00219 [Aspergillus terreus NIH2624]
          Length = 1459

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 680 LEYYKNILTKNYAALNEGTKGQKQSLLNIMMELKKASNHPFMFPNAEARILEGSTRREDI 739

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L +         +       
Sbjct: 740 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYQYQRLDGTIA 799

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 800 AASRRLAIEHFNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 853

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++T++E V++R R K  +
Sbjct: 854 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 892


>gi|240281108|gb|EER44611.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1181

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    ++   F             L           +
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|149636761|ref|XP_001505482.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 1393

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 65/244 (26%), Gaps = 55/244 (22%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------YDEEKH 47
            Y KF       ++   +E  +  ++     +L +                   + ++  
Sbjct: 381 IYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACTLLGLEGGGFSDQDE 438

Query: 48  WKEVH------------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA 87
               H                    K+  L  +++  +      +V       L  +++ 
Sbjct: 439 NGTDHYSDINRIGQLPDQTLMEESGKLMFLMALLKRLQREGHQTLVFSQSRKMLDIIERL 498

Query: 88  FPQGRTLD-----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                              +    I  +       +        G GL L      +V F
Sbjct: 499 LTNTHFKILRVDGTIAQLGEREKRISLFQKNKDYSVFLLTTQVGGVGLTLTA-ATRVVIF 557

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+        +   V R  + G K  V +Y LI   T++E + +R   K ++     
Sbjct: 558 DPSWNPAT-----DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLVRQTT 612

Query: 196 NALK 199
              K
Sbjct: 613 GDKK 616


>gi|50286955|ref|XP_445907.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74691046|sp|Q6FV37|INO80_CANGA RecName: Full=Putative DNA helicase INO80
 gi|49525213|emb|CAG58826.1| unnamed protein product [Candida glabrata]
          Length = 1484

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++ +   N   +++ +     +  +++     +              +   
Sbjct: 1294 SAKLKKLDELLVELKKNDHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1353

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                    +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1354 VHDWQTNPEIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1407

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V VY L+ + TI+E +  R + K  +Q +++    K+T
Sbjct: 1408 GQTKQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTKDT 1450


>gi|326469389|gb|EGD93398.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton tonsurans CBS
            112818]
          Length = 1141

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 954  SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRND 1013

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1014 SVLDFTDNPDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1067

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1068 IGQLRPVMVHRLLVENTVEDRIIALQDKKRQIIEGALDE 1106


>gi|189529831|ref|XP_688979.3| PREDICTED: DNA repair and recombination protein RAD54B [Danio rerio]
          Length = 1174

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 48/218 (22%)

Query: 26   ASKTVKCLQLANGAVYYDEE----------------------------KHWKEVHDEKIK 57
                    +L N                                      +      K+ 
Sbjct: 848  LVCINALKKLCNHPALLYNTLQVRMCSEKADEMYEGEVKELFPEEYSTGAFSTADSGKLL 907

Query: 58   ALEVIIEKANA----APIIVAYHFNSDLAR---------LQKAFPQGRTLD-KDPCTIQE 103
             L  ++           +++  +    L            +     G+T   +    +  
Sbjct: 908  VLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDS 967

Query: 104  WNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +N           +S   G+ L   G + LV + + W+        +   + R  + G K
Sbjct: 968  FNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPAN-----DIQAMARVWRDGQK 1022

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + V +Y  +   +I+E + QR  +K  +   +++  KK
Sbjct: 1023 KTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKK 1060


>gi|308498978|ref|XP_003111675.1| CRE-SSL-1 protein [Caenorhabditis remanei]
 gi|308239584|gb|EFO83536.1| CRE-SSL-1 protein [Caenorhabditis remanei]
          Length = 1986

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1288 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADSKVFCFILSTRSGGVGVNLT-GADTVIFY 1346

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1347 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILKKATQKRRLGELAI 1401

Query: 196  NA 197
            + 
Sbjct: 1402 DE 1403


>gi|254577895|ref|XP_002494934.1| ZYRO0A13244p [Zygosaccharomyces rouxii]
 gi|238937823|emb|CAR26001.1| ZYRO0A13244p [Zygosaccharomyces rouxii]
          Length = 1883

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 72/255 (28%), Gaps = 66/255 (25%)

Query: 2    KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---- 51
            + Y  F R+    +Q +           +         +L N         H +      
Sbjct: 1550 QLYEDFSRKQKTVVQKDIENTADTDNKQHIFQALQYMRKLCNHPALVLSPDHPQLKQVES 1609

Query: 52   -------------HDEKIKALEVIIEKA-----------------------NAAPIIVAY 75
                         +  K+ AL  ++ +                        +    ++  
Sbjct: 1610 YLKQTHMDLHDISNAPKLLALRNLLFECGIGEQDIDRKSPVNQLPSTVNVISQHRALIFC 1669

Query: 76   HFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGH 121
                 L                                ++++N +  I  L       G 
Sbjct: 1670 QLKDMLDMVENDLFKRYMPSVTYMRLDGSVEARDRQKVVRKFNEDPSIDCLLLTTKVGGL 1729

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL  G + ++F    W+      M +   + R  + G K+ V VY ++ + T++E ++
Sbjct: 1730 GLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIVTKGTLEEKIM 1783

Query: 182  QRLRTKSTIQDLLLN 196
               + K  I   ++N
Sbjct: 1784 GLQKFKMNIASTVVN 1798


>gi|294659674|ref|XP_462077.2| DEHA2G12496p [Debaryomyces hansenii CBS767]
 gi|199434146|emb|CAG90563.2| DEHA2G12496p [Debaryomyces hansenii]
          Length = 1405

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 37/224 (16%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHW-------------- 48
           Y     + Y  L  G      +  +   +  + +N    +D  +                
Sbjct: 601 YKNIITKNYSALNAGNKGSQISLLNVMSELKKASNHPYLFDGAEERALAKANSNARDNVL 660

Query: 49  --KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
               +   K+  LE ++   K     +++       L  L                G   
Sbjct: 661 RGIIMSSGKMVLLEQLLTRLKKEGHRVLIFSQMVRMLDILGDYLSIKGYQFQRLDGGIPS 720

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +   +I  +N              + G G+NL    + +V F   W+ +      +   
Sbjct: 721 SQRRISIDHFNAPDSKDFAFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQA 774

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 775 MARAHRIGQKNHVSVYRFVSKDTVEEEILERARKKMILEYAIIS 818


>gi|125974243|ref|YP_001038153.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
 gi|125714468|gb|ABN52960.1| SNF2-related protein [Clostridium thermocellum ATCC 27405]
          Length = 375

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    + GE +    + +K +   QL +             +++     +  
Sbjct: 192 KEYKKFKKDRVITIDGETLAGDTALTKLLYLRQLTS-------------IYNSNKHQVLK 238

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----DKDPCTIQEWNEGKIPLLFAHPA 117
            I +++    ++ Y+F  +   ++    +        + D   ++ +      +      
Sbjct: 239 DIFESSNDRFVIFYNFKREFEIIKNICFKIDRPISYINGDGTDLENYENKSNSITLVQYQ 298

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G+NLQ   N +++FSL    E   Q  +RI      + G  R  F YYLI +N+I+
Sbjct: 299 AGASGVNLQK-ANRIIYFSLPLSSEFWMQSKKRI-----HRIGQNRTCFYYYLITENSIE 352

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETI 203
           E +L+ L+ +    D  +   +KE +
Sbjct: 353 EKILEVLKQRR---DFTVELFEKEML 375


>gi|836793|dbj|BAA09277.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 778

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 82/220 (37%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
           K Y   ++ L  ++  + ++     +  ++  Q+ +    +       E           
Sbjct: 551 KLY---KKNLQMEISNKKLQ-----NMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTS 602

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
            K++ L+ +I    +    +++   F + L  ++                   +     +
Sbjct: 603 GKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQL 662

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++N  K    +      + G G+NL  G + +V F   W+ +     ++   + R  + 
Sbjct: 663 EKFNSSKDKHNIFLLSTRAAGLGINL-VGADTVVLFDSDWNPQ-----VDLQAMDRCHRI 716

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L   NTI+ ++L R   K  ++ +++   K
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGK 756


>gi|303390899|ref|XP_003073680.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302827|gb|ADM12320.1| putative transcriptional activator [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 879

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA-FPQGRTLDK---------DPC 99
              K+  L+ ++   KA    +++ +     +  ++     +G T  +            
Sbjct: 720 DSGKMIILDELLPRLKAEGHRLLIYFQMTRMIDLIEDYLVKKGYTYLRLDGSLKASARAD 779

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I++W      +      + G G+NL    + ++F+   W+    Q       + R  + 
Sbjct: 780 VIRDWQTNDKFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPTADQ-----QAMDRAHRL 833

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V VY LI + T++E VL+    K  IQ ++++ 
Sbjct: 834 GQTRDVTVYRLITRGTVEEKVLESANRKDEIQKMVIHG 871


>gi|2645429|gb|AAB87381.1| CHD1 [Homo sapiens]
          Length = 1709

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 782

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 783 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 897 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|159117623|ref|XP_001709031.1| DNA-dependent ATPase, putative [Giardia lamblia ATCC 50803]
 gi|157437146|gb|EDO81357.1| DNA-dependent ATPase, putative [Giardia lamblia ATCC 50803]
          Length = 1276

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 72/200 (36%), Gaps = 27/200 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKALEVIIEKAN--A 68
            +I   +  +  ++  + A+    ++  +               K+  L+ +I +     
Sbjct: 454 SSIGKTSLINIVMQLRKCADHPYLFNGVEPQPFKEGDHIVNVSGKMVVLDKLITRIKAIN 513

Query: 69  APIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHP 116
             ++V     S L  +                   L+     +Q +N    P  +     
Sbjct: 514 EKVLVFCQMTSMLNIIEDYLRYREYLYCRIDGSTDLETRAKYMQMFNTPTNPAFVFLLST 573

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLNL    N ++ +   ++ +      +   V R  +    + VFVY L+A+NT+
Sbjct: 574 RAGCLGLNLTA-ANHVIIYQQDFNPQA-----DLQAVARAYRLLQTKEVFVYRLLAENTV 627

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           D  + +R + K  + +L++ 
Sbjct: 628 DTRIYERAQLKLGLDNLIIQ 647


>gi|327263233|ref|XP_003216425.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
           carolinensis]
          Length = 1803

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 37/226 (16%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           KQY+K    R      +G         +  ++  +  N           +     K +AL
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFY--NKQEAL 780

Query: 60  EVIIEKAN---------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
           + +I  +                 + +++       L  L +     +   +        
Sbjct: 781 QNLIRSSGKLILLDKLLIRLRERGSRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG 840

Query: 98  ---PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +  +N              + G G+NL    + +V F   W+ +      +   
Sbjct: 841 ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQA 894

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 895 QARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|189230031|ref|NP_001121509.1| RAD54 homolog B [Xenopus (Silurana) tropicalis]
 gi|183986491|gb|AAI66345.1| rad54b protein [Xenopus (Silurana) tropicalis]
          Length = 897

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 54/245 (22%)

Query: 3   QYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVY------------------- 41
            Y K          L G    + +         +L N                       
Sbjct: 543 LYRKLLNSRTVKSCLLGSGESSPH-LVCIGALKKLCNHPFLLFRTIQGKSTNPDQDEHNL 601

Query: 42  ----------YDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA 87
                       +     E    K+  L  ++ +    + +  +++  ++   L  LQ  
Sbjct: 602 YESVAEVFPQDYDGAKISESESGKLLVLSNLLSRIRELSPSERVVLVSNYTQTLNILQDL 661

Query: 88  FPQG----------RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFF 135
             Q             + +    +  +N       +      + G GLNL  G + L+ +
Sbjct: 662 CNQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGLNL-IGASHLILY 720

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+        +   + R  + G +  V +Y L+   +++E + QR  +K  +   ++
Sbjct: 721 DLDWNPAN-----DIQAMARVWRDGQRHTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVV 775

Query: 196 NALKK 200
           +  KK
Sbjct: 776 DLTKK 780


>gi|68299795|ref|NP_001261.2| chromodomain-helicase-DNA-binding protein 1 [Homo sapiens]
 gi|269849549|sp|O14646|CHD1_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|119616504|gb|EAW96098.1| chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1710

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 782

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 783 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 897 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|50289211|ref|XP_447036.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526345|emb|CAG59969.1| unnamed protein product [Candida glabrata]
          Length = 1904

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 73/254 (28%), Gaps = 65/254 (25%)

Query: 2    KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEV---- 51
            + Y  F ++    ++ +           +         +L N         H +      
Sbjct: 1575 QLYEDFAKKQKNVVEKDIQNTADVDSKQHIFQALQYMRKLCNHPALVLSNDHPQLKQIQN 1634

Query: 52   -------------HDEKIKALEVIIEKA----------------------NAAPIIVAYH 76
                         +  K+ AL  ++ +                       +    ++   
Sbjct: 1635 YLKQTGCDLHDIRNAPKLTALRTLLFECGIGEADMDKKVTGEQLLTGSVISQHRALIFCQ 1694

Query: 77   FNSDLARL-------------QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
                L  +                             ++++N +  I  L       G G
Sbjct: 1695 LKDMLDMIENDLFKRYMPSVSYMRLDGSVDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLG 1754

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL  G + ++F    W+      M +   + R  + G K+ V VY ++ + T++E ++ 
Sbjct: 1755 LNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIVTKGTLEEKIMG 1808

Query: 183  RLRTKSTIQDLLLN 196
              + K  I   ++N
Sbjct: 1809 LQKFKMNIASTVVN 1822


>gi|325092395|gb|EGC45705.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H88]
          Length = 1181

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    ++   F             L           +
Sbjct: 966  KNDEWMHSGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRPVEVVRLVTRDTIEEQIYALGQTKLALDQRV 1121


>gi|317143698|ref|XP_001819632.2| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus oryzae RIB40]
          Length = 1090

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-----------LQK 86
              Y        V   KI+    I+   +      I+   F S L              ++
Sbjct: 905  RKYLRRLEKTWVSSAKIEKAMDILRGIQEGEEKTIIFSQFTSLLDLLEVPIVRQGWGYRR 964

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  D++   +   +     ++     +   GLNL    + ++ F  +W+      
Sbjct: 965  YDGSMKPGDRNSAVLDFTDSPDCKIILVSLKAGNSGLNLVA-ASQVIIFDPFWNP----- 1018

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             IE   + R  + G  R V ++ ++ QNT+++ +L+    K  + +  L+    + I
Sbjct: 1019 YIEEQAIDRAHRIGQVREVQIHRILVQNTVEDRILELQDKKRELIEGALDENASKNI 1075



 Score = 38.2 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 12/51 (23%), Gaps = 6/51 (11%)

Query: 1   MKQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDEE 45
           ++ Y   +          L+   +     N     ++  Q         + 
Sbjct: 669 LELYSSLEARTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHPHLITDF 719


>gi|302823829|ref|XP_002993563.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
 gi|300138630|gb|EFJ05392.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
          Length = 852

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 52/239 (21%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------------EKHWKEVH 52
           + +   LQ +   A    +      +L +      +                +   KE+H
Sbjct: 433 KNVRLALQDKAKRAR-VLASITALKKLCSHPKLIYDTVRAGGSEAAGFENCMQFFPKEMH 491

Query: 53  DEK-----------------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             +                 +  L   + K     I++  ++   L    +   +     
Sbjct: 492 TGRGTPSDGSWVKLSGKMFVLARLLENLRKKTNDRIVLVSNYTQTLDLFAQLCRERNYPY 551

Query: 96  ----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    +Q++N+             + G GLNL  GGN LV F   W+   
Sbjct: 552 VRLDGSTSIGKRQKLVQKFNDPSQNEFAFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPAN 610

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                ++    R  + G K+ V++Y  +A  TI+E V QR  +K  +Q ++    K E 
Sbjct: 611 -----DKQAAARVWRDGQKKRVYIYRFLATGTIEEKVYQRQISKEGLQKVISGDSKAEV 664


>gi|255946808|ref|XP_002564171.1| Pc22g01270 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591188|emb|CAP97415.1| Pc22g01270 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1198

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 51   VHDEKIKALEVIIEKANAA----PIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
                KI     I++           I+   F S L                F     L +
Sbjct: 999  FPSTKITKTLEILQANEDRGLEEKTIIFSQFTSLLDLLEVPLARRGWNHTRFDGSMNLKE 1058

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +  + N+    ++     +   GLNL    + ++ F  +W+       IE   V R
Sbjct: 1059 RNAAVTAFTNDPSCKIMLVSLKAGNSGLNLVA-ASHVIMFDPFWNP-----YIEDQAVDR 1112

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R VFV+ L+ +NT+++ ++     K  +    L+ 
Sbjct: 1113 AHRIGQVRNVFVHRLLIENTVEDRIVTLQDQKRELISGALDE 1154


>gi|73951135|ref|XP_859122.1| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2
           (CHD-2) isoform 6 [Canis familiaris]
          Length = 1836

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 42/233 (18%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVLLV 785

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  L+ ++ +       +++       L  L +         + 
Sbjct: 786 CECLFNLQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQR 845

Query: 98  ----------PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        +  +N              + G G+NL    + +V F   W+ +   
Sbjct: 846 LDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-- 902

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +     R  + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 903 ---DLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 952


>gi|302767836|ref|XP_002967338.1| hypothetical protein SELMODRAFT_87168 [Selaginella moellendorffii]
 gi|300165329|gb|EFJ31937.1| hypothetical protein SELMODRAFT_87168 [Selaginella moellendorffii]
          Length = 545

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 75/260 (28%), Gaps = 66/260 (25%)

Query: 2   KQYHKFQREL---YCDLQGENIEAFN---SASKTVKCLQLANGAVY-------------- 41
           + Y   ++E      + + +     N     S  ++  Q+ +                  
Sbjct: 273 ELYENLRKEYQDRISEYRSKGTLHMNRFIILSMLLRLRQMCDHPALLDSEHLFRVDEEDD 332

Query: 42  ----------------------------YDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
                                         +    +     K+KA   +++        +
Sbjct: 333 LITEDGSGLKEMREAVRKLQLEAREKQEDFDRSVQEIGQSAKLKAALRVLDMTPRGEKSL 392

Query: 73  VAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGH 121
           +   + S L  ++                 +  K    I+ +  +  + ++     + G 
Sbjct: 393 IFSQWTSMLNLIEPELEGAGIQFSRIDGSMSAGKRVAAIKRFSEDPDVVVMLISLRAGGC 452

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL    + ++   +WW+        E   + R  + G  R V V   + + T++E VL
Sbjct: 453 GLNLVA-ASRVLLMDMWWNPTT-----EDQAIDRTHRIGQTRPVHVTRFVVKQTVEEHVL 506

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           +    K  + + +      E
Sbjct: 507 EIQEKKKKLVEFVFGEKSSE 526


>gi|259150076|emb|CAY86879.1| Mot1p [Saccharomyces cerevisiae EC1118]
          Length = 1842

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 62/239 (25%)

Query: 14   DLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDE 54
            D++   I     +         +L N         H +                  ++  
Sbjct: 1525 DIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAP 1584

Query: 55   KIKALEVIIEKA-----------------------NAAPIIVAYHFNSDLAR-------- 83
            K+ AL  ++ +                        +    ++       L          
Sbjct: 1585 KLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKK 1644

Query: 84   -----LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                  ++++N +  I  L       G GLNL  G + ++F   
Sbjct: 1645 YMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFVEH 1703

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY +I + T++E ++   + K  I   ++N
Sbjct: 1704 DWNP-----MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN 1757


>gi|258570209|ref|XP_002543908.1| CHD1 protein [Uncinocarpus reesii 1704]
 gi|237904178|gb|EEP78579.1| CHD1 protein [Uncinocarpus reesii 1704]
          Length = 1358

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L  G   +  +  +  ++  + +N    +   +             
Sbjct: 702 LEYYKNILTKNYAALNQGSKGQKQSLLNIMMELKKASNHPFMFANAEERILQGSTRREDA 761

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 762 LRALITSSGKMMLLDQLLAKLKNDGHRVLIFSQMVRMLDILADYMEARNFAYQRLDGTIA 821

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +I+ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 822 AGPRRLSIEHFNSPDSTDFAFLLSTRAGGLGINLMT-ADTVILFDSDWNPQA-----DLQ 875

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  + V VY L++++T++E V++R R K  +
Sbjct: 876 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 914


>gi|198416532|ref|XP_002119473.1| PREDICTED: similar to TATA-binding protein-associated factor 172
            (ATP-dependent helicase BTAF1) (TBP-associated factor
            172) (TAF-172) (TAF(II)170) (B-TFIID transcription
            factor-associated 170 kDa subunit), partial [Ciona
            intestinalis]
          Length = 1335

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 52/225 (23%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDEKIKALEVIIE 64
              +         ++ N  ++     H +                   H  K+ AL+ ++ 
Sbjct: 1049 TSHVFQALQYLQKVCNHPLFVLTPSHPQYNAIMTQLKKSKTSLHDVKHASKLTALQQLLL 1108

Query: 65   KA---------------NAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDK 96
                             N    +V     + L  ++                  G   ++
Sbjct: 1109 DCGIGKTGDSLSEESVANQHRALVFCQHRNLLNIIENDLLRQLMPGVTYLRLDGGVPSNQ 1168

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + ++N +  I LL       G GLNL  G + ++F    W+      M++   + R
Sbjct: 1169 RYSIVSKFNNDPSIDLLLLTTKVGGLGLNLT-GADTVIFVEHDWNP-----MVDLQAMDR 1222

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G K+ V VY +I + T++E +L     K  + + ++    +
Sbjct: 1223 AHRIGQKKVVNVYRIITRGTMEEKILGLQEFKLNVANTIVGDDNR 1267


>gi|114600959|ref|XP_517850.2| PREDICTED: chromodomain helicase DNA binding protein 1 [Pan
           troglodytes]
          Length = 1710

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 782

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 783 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 897 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|331244727|ref|XP_003335003.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309313993|gb|EFP90584.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 964

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 27/203 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           QY   +R         +    +   KT++ +  +N  ++ D     KE+   K      I
Sbjct: 697 QYKSLRRFQL----SRDEFFNSGKVKTLQLILASNNNLHADPSSSSKEIDKSK------I 746

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW-NEGKIPL 111
           +++ + +  ++   F   L  L+                    +    + ++ N+  I +
Sbjct: 747 VKQDSPSRFLIFSQFTQMLDILKVVLKLLDVKFLVLTGQTNVTERQSLVDQFTNDPSITV 806

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GLNL    + ++ F   ++        +R    R  + G  R V V+ LI
Sbjct: 807 FLLSTRAGGLGLNLMA-ADTVILFDQDFNP-----HNDRQAEDRAYRLGQTRDVKVFKLI 860

Query: 172 AQNTIDELVLQRLRTKSTIQDLL 194
           ++ TI+E +LQ   TK  I + +
Sbjct: 861 SKGTIEEDILQLASTKIEIDNSI 883


>gi|242062862|ref|XP_002452720.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
 gi|241932551|gb|EES05696.1| hypothetical protein SORBIDRAFT_04g031330 [Sorghum bicolor]
          Length = 901

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F +               ++    +Q +N   K  L      S G G+NL  G + ++F+
Sbjct: 11  FINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINL-VGADTVIFY 69

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+       +++    R  + G  R V +Y LI+++TI+E +L++   K  + DL++
Sbjct: 70  DSDWNPA-----MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVI 124

Query: 196 N 196
            
Sbjct: 125 Q 125


>gi|301780254|ref|XP_002925544.1| PREDICTED: DNA excision repair protein ERCC-6-like [Ailuropoda
           melanoleuca]
          Length = 1240

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 66/245 (26%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACHLLNLGSVKFSVQG 436

Query: 43  -DEEKHWKEVH-------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
            +E +   +V                K+  L  ++++        +V       L  ++ 
Sbjct: 437 ANEGEDASDVDHIDQITDDTLMEESGKMIFLIELLKRLRDEGHQTLVFSQSRQILNIIEH 496

Query: 87  AFPQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             L +    I          +        G GL L      +V 
Sbjct: 497 LLKNRHFKILRIDGTVTHLVEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVI 555

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 556 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 610

Query: 195 LNALK 199
               K
Sbjct: 611 TGDKK 615


>gi|301776436|ref|XP_002923633.1| PREDICTED: transcription termination factor 2-like [Ailuropoda
            melanoleuca]
 gi|281337997|gb|EFB13581.1| hypothetical protein PANDA_012813 [Ailuropoda melanoleuca]
          Length = 1157

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 21/173 (12%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------R 92
             E           +  LE I   + +   +V   + S L  +     +            
Sbjct: 979  FENTRVSSKISSLLVELEAIRGNSASQKSVVVSQWTSMLQVVAWHLKRHGLTFATIDGSV 1038

Query: 93   TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +    ++ +N  +   ++    ++ G GLNL  GGN L    + W+     Q  +RI
Sbjct: 1039 NPKQRMDLVEAFNSSRGPQVMLISLSAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI 1097

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKK 200
                  + G ++ V V+  I + T++E +L     K T+   +L     ++KK
Sbjct: 1098 -----YRVGQQKDVVVHKFICEGTVEEKILHLQEKKKTLAKQVLSGSGESVKK 1145


>gi|126728045|ref|ZP_01743861.1| hypothetical protein SSE37_18682 [Sagittula stellata E-37]
 gi|126711010|gb|EBA10060.1| hypothetical protein SSE37_18682 [Sagittula stellata E-37]
          Length = 492

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 25/211 (11%)

Query: 2   KQYHKFQRELYCDLQGE----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           K Y  ++ +   ++         +A     + ++ +Q+ +     DE    +     K+ 
Sbjct: 262 KLYDTYREQARAEVMQGGQLAEDDAEAVLKRLLRLVQVTSNPALVDENYKEEP---GKVA 318

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNE 106
            L  ++ +   + + +IV   F  +   L +            +     ++       N 
Sbjct: 319 ELNRLVREATDDGSKVIVWTSFVRNAEWLCRRLAEYGAVRVHGELPIEVRNRAIEDFKNR 378

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +L A P +   GL L    N  +++   + L+++ Q  +RI      +   KR  +
Sbjct: 379 EDISVLVATPGAAKEGLTLT-VANHAIYYDRSFSLDDYLQSQDRI-----HRISQKRECY 432

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++ LI  +TID  V   L  K  +   LL +
Sbjct: 433 IWNLICDDTIDCWVDSLLSAKR-LAAQLLQS 462


>gi|19704721|ref|NP_604283.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715039|gb|AAL95582.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 892

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 673 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 728

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 729 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 788

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 789 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 842

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 843 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 875


>gi|213406015|ref|XP_002173779.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
 gi|212001826|gb|EEB07486.1| SNF2 family helicase Swr1 [Schizosaccharomyces japonicus yFS275]
          Length = 1276

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 70/180 (38%), Gaps = 19/180 (10%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
             Q+         ++   +    K++ L++++ +       +++       L  L++    
Sbjct: 975  HQICTRLAIAFPDRRLLQYDCGKLQKLDLLLREIVPAGHRVLIFTQMTRVLDILEQFLNI 1034

Query: 91   GRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           +     + +N + +IP+      S G G+NL  G + ++F+   W
Sbjct: 1035 HGYRYLRLDGATKVEQRQLLTERFNQDERIPVFILSTRSGGLGINLT-GADTVIFYDSDW 1093

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + +      +     R  + G  R V +Y LI++ T++  +L+R   K  +  +++   +
Sbjct: 1094 NPQL-----DAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLKRANQKRMLDKIVIQGGE 1148


>gi|194386618|dbj|BAG61119.1| unnamed protein product [Homo sapiens]
          Length = 1108

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 42/240 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           K Y     + +  L          N  +  ++  +  N        +             
Sbjct: 634 KYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP 693

Query: 52  ------------HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++   KA    +++       L  L+      R L + 
Sbjct: 694 AASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYER 753

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  +++      +      + G G+NL    +  + F   W+ +   
Sbjct: 754 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 810

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              +     R  + G  +AV VY L+ +N+ +  +  R   K  +   +L ++     +V
Sbjct: 811 ---DLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNV 867


>gi|307199491|gb|EFN80104.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Harpegnathos saltator]
          Length = 1948

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 28/210 (13%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 975  KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETS 1034

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   K+  L  +++K   +   +++       L  L+          +     Q++ 
Sbjct: 1035 ALIKAAGKLVLLSKMLKKLRGDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGAQQF- 1093

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    + ++ +   W+        +    +R  + G    V
Sbjct: 1094 -----VFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRAHRIGQANKV 1142

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1143 MIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1172


>gi|190407873|gb|EDV11138.1| helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 1867

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 62/239 (25%)

Query: 14   DLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDE 54
            D++   I     +         +L N         H +                  ++  
Sbjct: 1550 DIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAP 1609

Query: 55   KIKALEVIIEKA-----------------------NAAPIIVAYHFNSDLAR-------- 83
            K+ AL  ++ +                        +    ++       L          
Sbjct: 1610 KLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKK 1669

Query: 84   -----LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                  ++++N +  I  L       G GLNL  G + ++F   
Sbjct: 1670 YMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFVEH 1728

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY +I + T++E ++   + K  I   ++N
Sbjct: 1729 DWNP-----MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN 1782


>gi|240278991|gb|EER42497.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H143]
 gi|325090250|gb|EGC43560.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H88]
          Length = 974

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWK----------------------EVHDEKIKA 58
            + ++        +L N           +                           KI+ 
Sbjct: 597 NSESALQLITILKKLCNSPSLLKPRNSDQTPNSTLGALISSLPPTVLRHLSPASSGKIRV 656

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 657 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGSTPPSKRQGLVDDFN 716

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + L+ F + W+        +   + R  + G K
Sbjct: 717 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARIHRDGQK 770

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 771 RHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 804


>gi|225560239|gb|EEH08521.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 974

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWK----------------------EVHDEKIKA 58
            + ++        +L N           +                           KI+ 
Sbjct: 597 NSESALQLITILKKLCNSPSLLKPRNSDQTPNSTLGALISSLPPTVLRHLSPASSGKIRV 656

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 657 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGSTPPSKRQGLVDDFN 716

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + L+ F + W+        +   + R  + G K
Sbjct: 717 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARIHRDGQK 770

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 771 RHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 804


>gi|154276746|ref|XP_001539218.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414291|gb|EDN09656.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 959

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWK----------------------EVHDEKIKA 58
            + ++        +L N           +                           KI+ 
Sbjct: 582 NSESALQLITILKKLCNSPSLLKPRNSDQTPNSTLGALISSLPPTVLRYLSPASSGKIRV 641

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 642 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATFLTSLSLPFLRLDGSTPPSKRQGLVDDFN 701

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + L+ F + W+        +   + R  + G K
Sbjct: 702 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARIHRDGQK 755

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   VY L+ +  ++E + QR  TK  + D +++
Sbjct: 756 RHCRVYRLVLKGALEEKIWQRQVTKIGLADSVMD 789


>gi|241958618|ref|XP_002422028.1| DNA helicase, putative [Candida dubliniensis CD36]
 gi|223645373|emb|CAX40029.1| DNA helicase, putative [Candida dubliniensis CD36]
          Length = 1366

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              K+  L+ ++   K     I++ +     +   ++                T++     
Sbjct: 1214 SGKLAKLDELLVDLKQGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1273

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+       I+   + R  + 
Sbjct: 1274 VQAWQTNPEIFIFMLSTRAGGLGLNLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRI 1327

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1328 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1366


>gi|109658944|gb|AAI17135.1| Chromodomain helicase DNA binding protein 1 [Homo sapiens]
          Length = 1709

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 782

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 783 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 897 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|134109445|ref|XP_776837.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259517|gb|EAL22190.1| hypothetical protein CNBC3280 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1045

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEGKI 109
           +H       E ++  +N    +        L R       G T  K     +  +N+ K 
Sbjct: 664 LHSIYQCTEEKVVVVSNWTSTLDLIQGLCKLKRYNYLRLDGSTPPKQRQELVDRFNKDKG 723

Query: 110 P----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  GG+ L+ F   W+        +   + R  + G KR V
Sbjct: 724 RQESFVFLLSAKAGGVGLNL-IGGSRLILFDSDWNPST-----DLQAMARIHRDGQKRPV 777

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           ++Y  +  N IDE + QR  TK+ + D +++  + E
Sbjct: 778 YIYRFLTTNAIDEKIYQRQITKTGLSDQMMDQTRTE 813


>gi|256269976|gb|EEU05227.1| Mot1p [Saccharomyces cerevisiae JAY291]
          Length = 1867

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 62/239 (25%)

Query: 14   DLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDE 54
            D++   I     +         +L N         H +                  ++  
Sbjct: 1550 DIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAP 1609

Query: 55   KIKALEVIIEKA-----------------------NAAPIIVAYHFNSDLAR-------- 83
            K+ AL  ++ +                        +    ++       L          
Sbjct: 1610 KLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKK 1669

Query: 84   -----LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                  ++++N +  I  L       G GLNL  G + ++F   
Sbjct: 1670 YMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFVEH 1728

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY +I + T++E ++   + K  I   ++N
Sbjct: 1729 DWNP-----MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN 1782


>gi|6325175|ref|NP_015243.1| Mot1p [Saccharomyces cerevisiae S288c]
 gi|417308|sp|P32333|MOT1_YEAST RecName: Full=TATA-binding protein-associated factor MOT1;
            Short=TBP-associated factor MOT1; AltName: Full=Modifier
            of transcription 1
 gi|171965|gb|AAA34786.1| Mot1 [Saccharomyces cerevisiae]
 gi|1147612|gb|AAB68257.1| Mot1p: a putative helicase [Saccharomyces cerevisiae]
 gi|151942715|gb|EDN61061.1| modifier of transcription [Saccharomyces cerevisiae YJM789]
 gi|285815459|tpg|DAA11351.1| TPA: Mot1p [Saccharomyces cerevisiae S288c]
          Length = 1867

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 62/239 (25%)

Query: 14   DLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDE 54
            D++   I     +         +L N         H +                  ++  
Sbjct: 1550 DIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAP 1609

Query: 55   KIKALEVIIEKA-----------------------NAAPIIVAYHFNSDLAR-------- 83
            K+ AL  ++ +                        +    ++       L          
Sbjct: 1610 KLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKK 1669

Query: 84   -----LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                  ++++N +  I  L       G GLNL  G + ++F   
Sbjct: 1670 YMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLT-GADTVIFVEH 1728

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY +I + T++E ++   + K  I   ++N
Sbjct: 1729 DWNP-----MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN 1782


>gi|313247391|emb|CBY15642.1| unnamed protein product [Oikopleura dioica]
          Length = 1498

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 75/221 (33%), Gaps = 35/221 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------------KHW 48
           K Y       Y  L+ ++  +    +  ++  ++ N     D+                 
Sbjct: 643 KYYKFVLTRNYEALKVKSGTSLT--NVLMELKKICNHPYLNDKCSESAARLSNNAFEGSE 700

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
              +  K+  ++ +++K       +++       L  L+      +   +          
Sbjct: 701 LTANCGKLLLMQKMLKKLKEQGHRVLIFSQMTKLLDLLEDYLEYEQYKYERIDGSVTGSI 760

Query: 98  -PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N+   +  +      + G G+NL    + ++ +   W+        +    +
Sbjct: 761 RQQAIDRFNKPGSESFIFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFS 814

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G K  V +Y  + QN+++E V Q  + K  +  L++
Sbjct: 815 RAHRIGQKNKVLIYRFVTQNSVEERVAQVAKKKMMLNHLVI 855


>gi|297675709|ref|XP_002815806.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Pongo
           abelii]
          Length = 1709

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 723 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 782

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 783 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 842

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 897 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940


>gi|114620947|ref|XP_528193.2| PREDICTED: RAD54 homolog B isoform 2 [Pan troglodytes]
 gi|114620949|ref|XP_001142757.1| PREDICTED: RAD54 homolog B isoform 1 [Pan troglodytes]
          Length = 910

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 556 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 614

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 615 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 674

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 675 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 733

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 734 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 788

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 789 CGAVVDLTK 797


>gi|209882027|ref|XP_002142451.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
 gi|209558057|gb|EEA08102.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
          Length = 1877

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 45/238 (18%)

Query: 4    YHKFQRELYCDL------QGENIEAFNSASKTV---KCLQLANGAVYY------------ 42
            Y          L       G+ +   N  S      +  +  N                 
Sbjct: 1285 YRAIFERNRAFLCKNVTVGGKKVGVGNIPSLMNVEVELRKCCNHPFQVVGVEEREVALCR 1344

Query: 43   --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
              +E          K+  +E ++ K  A    ++V   F   L  L++     +      
Sbjct: 1345 TSEERYRKMVELSGKMVLMEKLLPKLKAEGHKVLVFSQFIQTLTLLEELVEHHKWGYERL 1404

Query: 93   ----TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +N  +    +      + G G+NL    + ++ F   W+ +    
Sbjct: 1405 DGSIRGSDRSAAITRFNADESDKFIFLLSTRAGGLGINLTS-ADTVIIFDSDWNPQN--- 1460

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKET 202
              +     R  + G  R V VY LI   T +  + +R   K  +   + +  A ++E 
Sbjct: 1461 --DVQACARAHRIGQTRDVKVYRLITARTYEAEMFERASRKLGLNTAVFHKGAFREEG 1516


>gi|302902557|ref|XP_003048670.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
 gi|256729604|gb|EEU42957.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI
           77-13-4]
          Length = 773

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 70/214 (32%), Gaps = 29/214 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEK 55
            + +R    +L  + I      +   +   + N    +                     K
Sbjct: 478 EEMERAQTLELAKKQIAQKKLGNPLAQLRLVCNSPHNFYNPWNASKDLTVDDSIVTASGK 537

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTI 101
           +  L+ ++ +   +   +++   F        D  R  + +   R         +     
Sbjct: 538 MLLLDRLLPRLFQDDHKVLIFSQFTTQLDILEDYCRELRGWNVCRIDGSVSQESRRTQIA 597

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               + +  +      + G G+NL    + ++ F   ++ ++     +     R  + G 
Sbjct: 598 DFNTDPEYKVFLLSTRAGGQGINL-ASADTVILFDSDFNPQQ-----DLQAQDRCHRIGQ 651

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V V+ L  ++T++E +L     K  ++ L++
Sbjct: 652 TRPVVVFRLATKDTVEESLLLSADAKRRLEKLVI 685


>gi|109078102|ref|XP_001097125.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Macaca
           mulatta]
          Length = 1712

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 725 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 784

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 785 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 844

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 845 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 898

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 899 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 942


>gi|70989932|ref|XP_749815.1| SWI/SNF family DNA-dependent ATPase [Aspergillus fumigatus Af293]
 gi|66847447|gb|EAL87777.1| SWI/SNF family DNA-dependent ATPase, putative [Aspergillus
           fumigatus Af293]
          Length = 1005

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGA---VYYDEEKHWKEVHDEKIKALEVIIE 64
           Q++    LQ    E+    S   K  Q +  +     Y +      +   KI     I+E
Sbjct: 778 QQQWRTVLQPNEGESTQRLSLLRK--QASRSSAARRTYRQALENAWITSSKIDKALEIVE 835

Query: 65  KAN----AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKI 109
           +         II+   F S L  ++    +   L +               ++       
Sbjct: 836 QIQNDGTGDKIIIFSQFTSLLDLMEIPLQRRGWLFRRYDGSMRLADRHAVVVEFSTNPNC 895

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L+     +   GLNL    + ++    +W+       +E   + R  + G +R V VY 
Sbjct: 896 RLMLVSLRAGNAGLNLTA-ASKVIILDPFWNP-----FVEEQAIGRVHRIGQQRPVHVYR 949

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           ++  +T+++ +      K  +    L+     TI +
Sbjct: 950 ILTPDTVEDRIQNLQDEKRRLVQGALSDAADATIRL 985


>gi|299756092|ref|XP_001829083.2| SHREC complex subunit Mit1 [Coprinopsis cinerea okayama7#130]
 gi|298411519|gb|EAU92718.2| SHREC complex subunit Mit1 [Coprinopsis cinerea okayama7#130]
          Length = 1782

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 75/211 (35%), Gaps = 17/211 (8%)

Query: 2    KQYHKFQRELYCDLQGENI--EAFNSASK------TVKCLQLANGAVYYDEEKHWKEVHD 53
            + Y          L+G      A N+ +K       +   +       Y E+   + +  
Sbjct: 1100 QVYRSILSHNLDLLKGLTQPNRASNALTKGKLNNVLMHLRKCLQHPYLYAEDIEPQGLPP 1159

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWNEGKI--P 110
            +++    +          ++     +   R+      G T   +    + E+N+      
Sbjct: 1160 DEVHHKLIDASAKLRFLKLLLPKLKARGHRVLLFSQDGSTKGTERQKCMDEFNKPNSEYF 1219

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL +  + ++ F   ++  +     +   + R  + G K    V+ L
Sbjct: 1220 IFLLTTRAGGVGINL-FTADTVIIFDPDFNPHQ-----DLQAIARAYRYGQKNTCLVFKL 1273

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + +++ +E ++Q  + K  +  L++  +  +
Sbjct: 1274 MVKDSAEERIMQIGKKKLVLDHLIVQKMDDD 1304


>gi|320581684|gb|EFW95903.1| Nucleosome remodeling factor [Pichia angusta DL-1]
          Length = 1384

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 39/210 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------VHDEKIKALE 60
           G  I   N  ++  K    +N    +D  +                    +   K+  L+
Sbjct: 625 GSQISLLNIMAELKK---ASNHPYLFDGVEEHVLAKVGSHSRENILKGLIMSSGKMVLLD 681

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGK 108
            ++ K +     +++       L  +                  +  K    I  +N   
Sbjct: 682 QLLNKLHRDGHRVLIFSQMVRILDIIGDYLQLKGHSFQRLDGTISSHKRRLAIDHFNAEG 741

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    + ++ F   W+ +      +   + R  + G K  V 
Sbjct: 742 SKDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMARAHRIGQKNHVM 795

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           VY  ++++T++E VL+R R K  ++  +++
Sbjct: 796 VYRFVSKDTVEEQVLERARRKMILEYAIIS 825


>gi|294878780|ref|XP_002768479.1| hypothetical protein Pmar_PMAR022081 [Perkinsus marinus ATCC 50983]
 gi|239870964|gb|EER01197.1| hypothetical protein Pmar_PMAR022081 [Perkinsus marinus ATCC 50983]
          Length = 799

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
             ++   E    K++ L  ++   +      IV    +  L  ++ +             
Sbjct: 542 FPDRDMIERDCGKMRKLGELLTTLRDGGHKCIVFTQMSKMLDIIEASMNLHGFTYVRLDG 601

Query: 92  -RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              + +    ++ +N   KI    A   + G G+NL  G + ++F+   W+       ++
Sbjct: 602 STPVLRRQLVVEAFNKSPKIFAFIASTRAGGVGINLT-GADCVIFYDSDWNPA-----MD 655

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + R  + G  R V ++ L++ +TI+E +  +   K  + D++++ 
Sbjct: 656 RQAMDRCHRIGQTRDVHIFRLLSHHTIEENIFHKQLQKRMLDDVVVDE 703


>gi|256846855|ref|ZP_05552310.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
 gi|256717821|gb|EEU31379.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_36A2]
          Length = 899

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|255719802|ref|XP_002556181.1| KLTH0H06952p [Lachancea thermotolerans]
 gi|238942147|emb|CAR30319.1| KLTH0H06952p [Lachancea thermotolerans]
          Length = 1359

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 69/210 (32%), Gaps = 21/210 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y +   +       +        ++  +     NG     E     +   + +  +  
Sbjct: 1138 KLYDQAVNQNLTAEGLKREFRSEMEAQKDRLK---NGYKINFETLEPSQKIKQCLDIVRN 1194

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQ-EWNEGKI 109
            +   +    II+   F +    LQ             +           TI+  +   + 
Sbjct: 1195 VFANSRDEKIIIFSQFTTFFDLLQHFIRKELGVQYLRYDGSMDAQSRAATIEGFYRNNER 1254

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             LL     +   GL L    N ++    +W+       +E   + R  +    R V V+ 
Sbjct: 1255 RLLLISMKAGNAGLTLT-CANHVILVDPFWNP-----FVEEQAMDRCYRISQTREVQVHR 1308

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L+ ++++++ +L+  + K  + +  ++  K
Sbjct: 1309 LLIKDSVEDRILELQKKKRELVESAMDPNK 1338



 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 10/43 (23%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
            ++              N  +  ++  Q           +H  E
Sbjct: 987  KKAEKLMKNRSKGSYSNILTLLLRLRQACCHPELVILGEHKSE 1029


>gi|194749805|ref|XP_001957327.1| GF10366 [Drosophila ananassae]
 gi|190624609|gb|EDV40133.1| GF10366 [Drosophila ananassae]
          Length = 1635

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1022 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1081

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1082 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1141

Query: 91   -GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N  +    +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1142 GTTKAEDRGDLLRKFNAKDSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1196

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1197 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1245


>gi|83774254|dbj|BAE64379.1| unnamed protein product [Aspergillus oryzae]
          Length = 1590

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +   +    K + D K      +I       + +   F +  
Sbjct: 1259 RLSIAFPDKRLLQYDCGKLQRLD----KLLRDLKAGGHRALIFTQMTKMLDILEQFLNIH 1314

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N   +I        S G G+NL  G + ++F+ L W+
Sbjct: 1315 GHRYLRLDGTTKVEQRQILTDRFNNDSRILAFILSSRSGGLGINLT-GADTVIFYDLDWN 1373

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++   +
Sbjct: 1374 PA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1427


>gi|294786039|ref|ZP_06751326.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
 gi|294486376|gb|EFG33739.1| Snf2 family protein [Fusobacterium sp. 3_1_27]
          Length = 899

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|156052901|ref|XP_001592377.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980]
 gi|154704396|gb|EDO04135.1| hypothetical protein SS1G_06618 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1505

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 40/233 (17%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
           Y       Y  L +G   +  +  +  ++  + +N    +   +                
Sbjct: 681 YKNILTRNYAALNEGSKGQKQSLLNIMMELKKASNHPYMFPNAEEKILKGSERRDDQLKG 740

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 741 LIASSGKMMLLDRLLAKLKKDNHRVLIFSQMVKMLDILGDYLQLRGYQFQRLDGTVAAGP 800

Query: 98  -PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N  +           + G G+NL    + +V F   W+ +      +   + 
Sbjct: 801 RRQAIDHFNAEDSNDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQAMA 854

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-----QDLLLNALKKET 202
           R  + G K+ V +Y L+++ T++E +L+R R K  +     Q  + +  KKE 
Sbjct: 855 RAHRIGQKKPVSIYRLVSKETVEEEILERARNKLMLEFITIQRGVTDKEKKEL 907


>gi|330800380|ref|XP_003288215.1| hypothetical protein DICPUDRAFT_152429 [Dictyostelium purpureum]
 gi|325081785|gb|EGC35289.1| hypothetical protein DICPUDRAFT_152429 [Dictyostelium purpureum]
          Length = 1956

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 70/239 (29%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDEKIKALEVIIE 64
            A +         +L     +     H +                   H  K+ +L+ ++ 
Sbjct: 1633 ATHIFQALQYLRKLCGHPSFVLNPNHPQYNTIMKEFRMSPQDLLDIGHSPKLVSLKELLL 1692

Query: 65   KA---------------------------------NAAPIIVAYHFNSDLARLQK----- 86
            +                                  N   +++       L  ++      
Sbjct: 1693 ECGIGVSSHQQLKSSTSSTSSIIKNEIANEISATTNQHRVLIFAQMKQMLDIVENELFKK 1752

Query: 87   --------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             K    + ++N +  I +L       G GLNL  G + ++F   
Sbjct: 1753 HLPSITYLRMDGSTESMKRHTIVNQFNSDPTIDVLLLTTHVGGLGLNLT-GADTVIFLEH 1811

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY LI   T++E ++   + K  I + ++N
Sbjct: 1812 DWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITTGTLEEKIMGLQKFKLNIANTVIN 1865


>gi|311249889|ref|XP_003123851.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus
           scrofa]
          Length = 1706

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 717 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 776

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 777 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 836

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 837 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 890

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 891 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 934


>gi|224136306|ref|XP_002326828.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222835143|gb|EEE73578.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 866

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 83/239 (34%), Gaps = 44/239 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    R+    L   +  A N  S     ++  +  +    +        EE      
Sbjct: 299 KVYTSILRKELPKLLALSSSASNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVK 358

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              K+  L+ ++EK +     +++       L              +        ++   
Sbjct: 359 ASGKLIILDQLLEKLHDSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFA 418

Query: 100 TIQEW-----------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            I+ +           ++    +      + G GLNL    + ++F+   W+ +     +
Sbjct: 419 AIRSFSGQSGRSGSESDQNSSFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ-----V 472

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-----DLLLNALKKET 202
           ++  + R  + G    V    L+ +++++E+++QR + K  +      D ++   +KET
Sbjct: 473 DKQALQRAHRIGQMNHVLSINLVTRHSVEEVIMQRAKRKLQLSHDVVGDDVMEEDRKET 531


>gi|312068394|ref|XP_003137194.1| BRM protein [Loa loa]
 gi|307767650|gb|EFO26884.1| BRM protein [Loa loa]
          Length = 619

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------- 52
            Y   Q+ L  D +     A    +  V   +L N    ++  +                
Sbjct: 46  LYQHMQKGLLIDSKHAGGRAL--MNTVVHLRKLCNHPFLFENVEDECREFWKVPDVTGKD 103

Query: 53  ----DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                 K + L+ ++ K  A+   I++     S +  ++                   D+
Sbjct: 104 LYRVSGKFELLDRVLPKLKASGHRILMFCQMTSLMTIMEDYLNYREFKYLRLDGSTKPDE 163

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N       +      + G GLNLQ   + ++ F   W+  +           
Sbjct: 164 RGQLLELYNAPNSEYFIFMLSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQD 217

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  R V V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 218 RAHRIGQSREVRVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 262


>gi|295671388|ref|XP_002796241.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226284374|gb|EEH39940.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 999

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWK----------------------EVHDEKIKA 58
            + ++        +L N     + +   +                           KI+ 
Sbjct: 611 NSDSALQLITILKKLCNSPSLLNPKSSDEDSTSTLSSLVASLPSSITRRLTPASSGKIRV 670

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L K                   K    + ++N
Sbjct: 671 LDQLLHNIRHTTSEKVVLISNYTSTLDLLGKLLTSLSLSFLRLDGSTPAAKRQALVDDFN 730

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + LV F + W+     Q + RI      + G K
Sbjct: 731 RSSSTSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDGQK 784

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y  + +  ++E + QR  TK  + D +++
Sbjct: 785 RHCRIYRFLLKGALEEKIWQRQVTKIGLADSVMD 818


>gi|149726480|ref|XP_001504655.1| PREDICTED: chromodomain helicase DNA binding protein 1 [Equus
           caballus]
          Length = 1713

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 724 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 783

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 784 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 843

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 844 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 897

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 898 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 941


>gi|20152037|gb|AAM11378.1| LD39323p [Drosophila melanogaster]
          Length = 1101

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 34/225 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------EEKH 47
           KQY+K    +      +G+        +  ++  +  N A                E   
Sbjct: 238 KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQ 297

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  L+ ++   K     +++       L  L     +     +         
Sbjct: 298 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 357

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 358 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 411

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 412 ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 456


>gi|256028234|ref|ZP_05442068.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289766166|ref|ZP_06525544.1| SWF/SNF family helicase [Fusobacterium sp. D11]
 gi|289717721|gb|EFD81733.1| SWF/SNF family helicase [Fusobacterium sp. D11]
          Length = 899

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+   +   N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTLSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|164659754|ref|XP_001731001.1| hypothetical protein MGL_2000 [Malassezia globosa CBS 7966]
 gi|159104899|gb|EDP43787.1| hypothetical protein MGL_2000 [Malassezia globosa CBS 7966]
          Length = 1627

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 9/168 (5%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
             LQ   G +   +    + V D       +I  +      I+   FN    R  +     
Sbjct: 1293 LLQYDCGKLQQLDTLMRRLVTDG---HRVLIFTQMTKVLDILEKFFNYHGYRYLRLDGAT 1349

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +   +   T +   + +I        S G G+NL  G + ++F+ L W+     Q ++R 
Sbjct: 1350 KVEQRQALTERFNRDSRISAFILSTRSGGLGINL-VGADTVIFYDLDWNAAIESQCMDR- 1407

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  + G  R V +Y  ++++TI+E +L++   K  +  L++   +
Sbjct: 1408 ----AHRIGQTRDVHIYRFVSEHTIEENMLRKANQKRRLDQLVIQEGE 1451


>gi|73952002|ref|XP_856275.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 5 [Canis familiaris]
          Length = 1702

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 713 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 772

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 773 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 832

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 833 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 886

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 887 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 930


>gi|73952000|ref|XP_856236.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 4 [Canis familiaris]
          Length = 1701

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 712 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 771

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 772 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 831

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 832 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 885

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 886 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 929


>gi|71004894|ref|XP_757113.1| hypothetical protein UM00966.1 [Ustilago maydis 521]
 gi|46096494|gb|EAK81727.1| hypothetical protein UM00966.1 [Ustilago maydis 521]
          Length = 1124

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAY----------HFNSDLARLQKAFPQGRTLDK 96
             +     K+ A  +    AN   +++             F S                +
Sbjct: 681 EPELCGKWKVLAGMLAQWHANGDKVLLFSTNLRLLQFIEFFLSREGHNFLRLDGTTPQPR 740

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N +  I +      + G GLNL    N +V F   W+        +   + R
Sbjct: 741 RQQLVNQFNRDASIFVFLISTTAGGTGLNLTS-ANRVVVFDPHWNPSH-----DLQAMDR 794

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  R V+VY LI   +++E++  R   K    ++  NA K+ 
Sbjct: 795 AYRFGQSRDVYVYRLIGAGSLEEVIYGRQIYKQQQMEIGYNATKER 840


>gi|237740914|ref|ZP_04571395.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
 gi|229431211|gb|EEO41423.1| SWF/SNF family helicase [Fusobacterium sp. 4_1_13]
          Length = 899

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|6912622|ref|NP_036547.1| DNA repair and recombination protein RAD54B 1 [Homo sapiens]
 gi|51316548|sp|Q9Y620|RA54B_HUMAN RecName: Full=DNA repair and recombination protein RAD54B; AltName:
           Full=RAD54 homolog B
 gi|4959396|gb|AAD34331.1|AF112481_1 RAD54B protein [Homo sapiens]
 gi|12805023|gb|AAH01965.1| RAD54 homolog B (S. cerevisiae) [Homo sapiens]
 gi|119612119|gb|EAW91713.1| hCG2009220, isoform CRA_c [Homo sapiens]
 gi|261859006|dbj|BAI46025.1| RAD54 homolog B [synthetic construct]
          Length = 910

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 556 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 614

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 615 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 674

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 675 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 733

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 734 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 788

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 789 CGAVVDLTK 797


>gi|34763541|ref|ZP_00144479.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886790|gb|EAA23925.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 899

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E ++ K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELENKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|328786654|ref|XP_624551.3| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis
           mellifera]
          Length = 821

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 32/200 (16%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHD------------EKIKALEVIIE--KANA 68
            +  +      ++ N    +  EK+   ++              KI  ++ +I+  K   
Sbjct: 510 ISHLTLITALKKICNHPELFYNEKNDLYLNKVSIKNITRKGYYGKISIVQTLIKNLKKTN 569

Query: 69  APIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN--EGKIPLLFAHP 116
             +++  ++   L  L++                T       I+++N       +     
Sbjct: 570 EKLVLISYYTQTLDLLERVCNMECLQFLRLDGNTTSSTRSKIIEQFNSTNDNNKIFLLSA 629

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL  G + L+ F   W+        +   + R  + G K  V++  L+   TI
Sbjct: 630 KAGGVGLNL-PGASRLILFDSDWNPAS-----DSQAMARIWRDGQKNDVYILRLLTTGTI 683

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E + QR   K+ + + +++
Sbjct: 684 EEKIFQRQINKANLSETVID 703


>gi|281350318|gb|EFB25902.1| hypothetical protein PANDA_008326 [Ailuropoda melanoleuca]
          Length = 1566

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 577 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 636

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 637 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 696

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 697 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 750

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 751 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 794


>gi|237833999|ref|XP_002366297.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
 gi|211963961|gb|EEA99156.1| SNF2/RAD54 helicase family protein [Toxoplasma gondii ME49]
          Length = 1667

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 29   TVKCLQLAN--GAVYYDEEKHWKEVHDE-----KIKALEVIIEKANAAPIIVAYHFNSDL 81
              + LQ A   G     ++    E           + L  I  +      +V   F S L
Sbjct: 1467 LSRLLQQAGKRGPDGIMQKIKASEFRSSTKIEALYQELLEIEREDTTVKSLVFSQFCSML 1526

Query: 82   ARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
              ++    +G               +        N+  + +L     + G GLNLQ   +
Sbjct: 1527 DLIEWRLKKGGIHCAKMVGSMSIVSRSNVLYAFNNDPSLKVLLISLKAGGEGLNLQ-IAS 1585

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +     WW+     Q I+R     QR     + V     IA+ TI+E +LQ    K  +
Sbjct: 1586 RIFLMDPWWNPAAEMQAIQRAHRIGQRH----KEVIAIRFIAEKTIEERILQLQEKKQLV 1641

Query: 191  QDLLLNA 197
             D  + A
Sbjct: 1642 FDGTVGA 1648


>gi|281338942|gb|EFB14526.1| hypothetical protein PANDA_015067 [Ailuropoda melanoleuca]
          Length = 1218

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 66/245 (26%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 359 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACHLLNLGSVKFSVQG 416

Query: 43  -DEEKHWKEVH-------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
            +E +   +V                K+  L  ++++        +V       L  ++ 
Sbjct: 417 ANEGEDASDVDHIDQITDDTLMEESGKMIFLIELLKRLRDEGHQTLVFSQSRQILNIIEH 476

Query: 87  AFPQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             L +    I          +        G GL L      +V 
Sbjct: 477 LLKNRHFKILRIDGTVTHLVEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVI 535

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 536 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 590

Query: 195 LNALK 199
               K
Sbjct: 591 TGDKK 595


>gi|238484689|ref|XP_002373583.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220701633|gb|EED57971.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1126

 Score = 89.8 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
            K+ + +   KI  L  ++   K N    ++   F   +  L+                  
Sbjct: 936  KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 995

Query: 94   LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N +V F   ++ +      +   
Sbjct: 996  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQ-----EDVQA 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G  R V V  L+ ++TI+E +    +TK  +   +      E
Sbjct: 1050 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAVAGEDAAE 1098


>gi|312380716|gb|EFR26634.1| hypothetical protein AND_07156 [Anopheles darlingi]
          Length = 1492

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 72/230 (31%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 917  LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHIGVQ 976

Query: 53   -----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K  A+   +++       +  ++              
Sbjct: 977  GTITGPDLYRASGKFELLDRILPKLKASGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLD 1036

Query: 91   -GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    ++++N              + G GLNLQ   + +V F   W+  +    
Sbjct: 1037 GTTKSEERGDLLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1091

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1092 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1140


>gi|300122623|emb|CBK23191.2| unnamed protein product [Blastocystis hominis]
          Length = 1548

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 72/257 (28%), Gaps = 65/257 (25%)

Query: 2    KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
            + Y          L    +     +      +  ++ N      +E+             
Sbjct: 961  QYYKAIYDRNRSFLYKGCKKSTVPSLMHIETQLRKVCNHPFLIKKEEQAALEAQQAQQAQ 1020

Query: 53   ------------------------------------DEKIKALEVIIE--KANAAPIIVA 74
                                                  K+  L+ ++   ++    +++ 
Sbjct: 1021 QAQQAGENGGKTAEGEETAGSSASSGSAVLPPIVSCSGKMVLLDKLLPRLQSEGHRVLIF 1080

Query: 75   YHFNSDLARLQKAFP----------QGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHG 122
              F   L  L++                  +     I  +   +    +      + G G
Sbjct: 1081 SQFVKMLDILEEYCQLRAFKVARIDGQTKGNDRQTAIDAFSREDSDCFIFLLSTRAGGLG 1140

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    + +V +   W+ +      +     R  + G K+ V VY L+ QNT +  + +
Sbjct: 1141 INLTA-ADTVVIYDSDWNPQN-----DSQATARCHRIGQKQEVSVYRLLTQNTYEYEMFE 1194

Query: 183  RLRTKSTIQDLLLNALK 199
            R   K  I+ ++L+  K
Sbjct: 1195 RASRKLAIESVVLDREK 1211


>gi|165971312|gb|AAI58841.1| Rad54l protein [Rattus norvegicus]
          Length = 470

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +F R+   + +  E   + +S S      +L N      ++   +E          
Sbjct: 144 ELYKRFLRQAKPEEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEGTLGIF 203

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                          K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 204 PPGYNSKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYV 263

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 264 RLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 321

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  ++Y L++  TI+E + QR   K  +   +++ 
Sbjct: 322 ----DEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 370


>gi|193203249|ref|NP_001032980.2| hypothetical protein T23H2.3 [Caenorhabditis elegans]
 gi|163644490|gb|AAM15608.2|U80033_3 Hypothetical protein T23H2.3 [Caenorhabditis elegans]
          Length = 1001

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 25/218 (11%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK+      +   DL   + +       T K                  +    K+    
Sbjct: 775 MKELENLMEKTMADLTIADSDNDEEGVDTNK-----EEPKQPPTRIFEPDFISCKMAKTL 829

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN--E 106
            ++ +       +++   + S L  ++K    G                   +  +N  +
Sbjct: 830 EVVREILEKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEK 889

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      + G K+ VF
Sbjct: 890 GGAQVMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YRMGQKKEVF 943

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           ++ LI + TI++ V+     K  +   +L       ++
Sbjct: 944 IHRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLN 981


>gi|66827655|ref|XP_647182.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475337|gb|EAL73272.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 3069

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 19/172 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
             Y  +K   +    K++ L +++   K      ++       L   +             
Sbjct: 1366 LYFPDKRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRL 1425

Query: 96   -------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   K     + +N + KI L      S G GLNL  G + ++F+   W+       
Sbjct: 1426 DGSTKIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPS----- 1479

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            ++     R  + G  R V +Y  I Q+TI+E +L++   K  +  +++ A +
Sbjct: 1480 MDAQAQDRCHRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGE 1531


>gi|224046507|ref|XP_002200063.1| PREDICTED: RAD54 homolog B [Taeniopygia guttata]
          Length = 919

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDE-------------- 44
           ++ Y K          LQG    + +         +L N      +              
Sbjct: 562 LELYRKLLGSRVITSCLQGRLENSPH-LICIGALKKLCNHPCLLFKAIKEKSCDPMSEEY 620

Query: 45  ------------------EKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLA 82
                                + E    K++ L  ++   +       +++  ++   L 
Sbjct: 621 DESSLYEGVIDVFPQDYTSDTFCETDSGKLQVLVKLLAAIHELNSSERVVLVSNYTQTLN 680

Query: 83  RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ                  + +    +  +N    P  +      + G GLNL  G +
Sbjct: 681 VLQDVCKHYGYSYTRLDGHTPVSQRQHIVDTFNSKFSPAFIFLLSSKAGGVGLNL-VGAS 739

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   + R  + G K +V +Y L+   +I+E + QR  +K  +
Sbjct: 740 HLILYDIDWNPAT-----DIQAMARVWRDGQKHSVHIYRLLTTGSIEEKIYQRQISKQDL 794

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 795 SGAVVDLSK 803


>gi|255555479|ref|XP_002518776.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
 gi|223542157|gb|EEF43701.1| DNA repair and recombination protein RAD54B, putative [Ricinus
           communis]
          Length = 940

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 54/225 (24%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDE--------------------------------- 44
           E  +     +      +L N      +                                 
Sbjct: 475 EETKKSKILAYITALKKLCNHPKLIYDTIRSGTPGTSGFEDCIRFFPPGMFSGRSGTWSG 534

Query: 45  -EKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
            +  W E+  +      ++  + +     I++  ++   L    +   + R         
Sbjct: 535 GDGSWIELSGKMHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGA 594

Query: 96  ----KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               K    +  +N+      +      + G GLNL  GGN LV F   W+        +
Sbjct: 595 TSIGKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNL-IGGNRLVLFDPDWNPAN-----D 648

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +    R  + G K+ V++Y  ++  TI+E V QR  +K  +Q ++
Sbjct: 649 KQAAARIWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVI 693


>gi|296327606|ref|ZP_06870151.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155280|gb|EFG96052.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 899

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|255084682|ref|XP_002504772.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226520041|gb|ACO66030.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1710

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALEVII--EKANAAPII 72
              ++  ++      + ++     +                K+KAL+ ++   +A    ++
Sbjct: 1066 LLMQLRKVCCHPFIFGDDAAKAIIGASGGNRVEALIEASGKLKALDEMLPRMRAGGHKVL 1125

Query: 73   VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCG 120
            +   F   L  L++                +L +       +N+      +      + G
Sbjct: 1126 IFSQFTMMLDMLEEFCEARGHAHLRLDGSTSLARRRYETALFNKPDGRHFVYLCSTRAGG 1185

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NLQ   + ++     W+        ++    R  + G KR V V  +   N+++E +
Sbjct: 1186 LGINLQS-ADTVILADPDWNPT-----YDQQAQDRAHRLGQKRPVTVIRMCHANSVEEGI 1239

Query: 181  LQR 183
            L  
Sbjct: 1240 LAV 1242


>gi|158261897|dbj|BAF83126.1| unnamed protein product [Homo sapiens]
          Length = 910

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 556 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 614

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 615 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 674

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 675 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 733

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 734 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 788

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 789 CGAVVDLTK 797


>gi|14091823|gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin [Oryza sativa]
 gi|15528681|dbj|BAB64747.1| putative DNA-dependent ATPase [Oryza sativa Japonica Group]
          Length = 1122

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                       
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    +++V +   W+ +      +     R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQA-----DLQAQDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 685


>gi|167837009|ref|ZP_02463892.1| helicase, Snf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 711

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 21/200 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            L  ++      A + ++   ++  + Y  +++    V  +++  L   +     A  +V
Sbjct: 372 FLSDQDQRRLTCALQNMR---MSCNSTYLLDQETDHGVKADELATLFESLFAQPEAKAVV 428

Query: 74  AYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHG 122
              +      +            +F  G    + P  ++ + +     +      +   G
Sbjct: 429 FSQWTRTHEIVIRRLKKLGIGYVSFHGGVPSARRPALLERFRDDPDCRVFL-STDAGSTG 487

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ+  + LV   L W+    +Q I RI      + G ++ V +   +A+ TI+E +L 
Sbjct: 488 LNLQH-ASTLVNMDLPWNPAVLEQRIARI-----HRMGQRKPVRIINYVAKGTIEEGMLS 541

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K ++   +L+    E 
Sbjct: 542 VLAFKRSLSAGILDGGTGEI 561


>gi|156379220|ref|XP_001631356.1| predicted protein [Nematostella vectensis]
 gi|156218395|gb|EDO39293.1| predicted protein [Nematostella vectensis]
          Length = 836

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 49/222 (22%)

Query: 22  AFNSASKTVKCLQLANGA--------------------------VYYDEEKHWKEVH--- 52
           +           +L N                              + E     E+    
Sbjct: 505 SSTHLECIGALKKLCNHPTLLYSASQGANTLGDEDQVSLYDGLLKLFPECNDASELSIAQ 564

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K+  L  ++E+ +     +++  +++  L  LQK                   K    
Sbjct: 565 SGKLTVLNSMLEEIHCTGERVVLVSNYSQTLDILQKLCTVKKYRYLRLDGSTPTAKRQSL 624

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N       +      + G GLNL  G + L+ + + W+        +   + R  +
Sbjct: 625 VERFNAKHCQDFVFLLSSKAGGVGLNL-IGASRLILYDIDWNPAN-----DLQAMARVWR 678

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G +R V +Y L+   TI+E + QR  TK  +   + +  K+
Sbjct: 679 DGQRRRVVIYRLLTTGTIEEKIYQRQTTKQGLSGAVADDRKQ 720


>gi|119494890|ref|XP_001264246.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
           NRRL 181]
 gi|119412408|gb|EAW22349.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
           NRRL 181]
          Length = 969

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N       +                      +H+      KI+ 
Sbjct: 567 NSENALQLITILKKLCNSPSLLSPKTGDEKPSETIAALLSSLPPNLLRHFSPSCSAKIRV 626

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++     + +  I++  ++ S L  L                     K    ++++N
Sbjct: 627 LDQLLHNLRTSTSEKIVLVSNYTSTLNMLANLLNSLSLPFLRLDGSTPAQKRQALVEDFN 686

Query: 106 E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                          + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 687 RLPPNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DVQAMARIHRDGQK 740

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  ++Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 741 RHCWIYRVLLKGSLEERIWQRQVTKIGLADSVME 774


>gi|301768523|ref|XP_002919680.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
           [Ailuropoda melanoleuca]
          Length = 1742

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 753 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 812

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 813 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 872

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 873 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 926

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 927 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 970


>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
          Length = 997

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 58/245 (23%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           ++ Y  F +        + ++     +  +   ++ N           +E          
Sbjct: 384 IELYETFMKSNLI---DKTVKGSTFVATML-LQKICNHPQNLTAVDSCEEQLALKENRTL 439

Query: 51  ---------------------VHDEKIKALEVIIE------KANAAPIIVAYHFNSDLAR 83
                                +   K+  +  +++      K     +++       L  
Sbjct: 440 QGIVKKLEALIAKNTTKTSNCLKSCKLTFILQLLKTWQEKLKEEGHKVLIFSQTRLMLDE 499

Query: 84  ----------LQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNIL 132
                              T  K    I+ +      P+        G GLNL    + +
Sbjct: 500 IEEALTNKGVHFARMDGTVTASKREAIIKGFQSKDGPPIFLMTTKVGGIGLNLTN-ASRV 558

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +     W+     Q ++R+      + G ++ V +Y LI   TI+E + ++  +K  I  
Sbjct: 559 IIADPSWNPSLDNQCVDRV-----YRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFK 613

Query: 193 LLLNA 197
                
Sbjct: 614 AATEE 618


>gi|209877056|ref|XP_002139970.1| transcription regulatory protein SNF2 [Cryptosporidium muris RN66]
 gi|209555576|gb|EEA05621.1| transcription regulatory protein SNF2, putative [Cryptosporidium
            muris RN66]
          Length = 1464

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 28/210 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-----EKIKALEV 61
             Q+ LY +L+       N     ++  ++ N    +  E              K   L+ 
Sbjct: 857  LQQYLYKELENNENSGPNVL---MQLRKVCNHPFLFSTEMQLPSDESIIRVCGKFVMLDS 913

Query: 62   IIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            I+ K  A    +++       L                       +    ++Q +N    
Sbjct: 914  ILPKLRAAGHRVLIFSQMTRLLSLLEIFLSLRNMTYLRLDGTTLSEDRQNSLQLFNATNS 973

Query: 110  P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            P  +      + G G+NLQ   + ++ F   W+ +      +    +R  + G  + V  
Sbjct: 974  PYFVFLLSTKAGGFGINLQS-ADTVILFDSDWNPQN-----DEQAQSRAHRIGQTKEVLT 1027

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +  +T++E +++    K     L++ +
Sbjct: 1028 LRFVTPDTVEERIMKTAGIKLDKDALIIKS 1057


>gi|168037602|ref|XP_001771292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162677381|gb|EDQ63852.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1032

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 35/222 (15%)

Query: 7   FQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY--------DEEKHWKEV 51
            Q++ Y  L  ++++A N+        +  ++  +  N    +                 
Sbjct: 407 LQKQYYRALLQKDMDAINTGGERKRLLNIAMQLRKCCNHPYLFEGAEPGPPYTTGEHLVD 466

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
              K+  L+ ++ K       +++       L  L+                 T D    
Sbjct: 467 TAGKMVLLDKLLPKLKQRQSRVLIFSQMTRLLDILEDYCQYRTYQYCRIDGNTTGDDRES 526

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I ++N              + G G+NL    +I++ +   W+ +     ++     R  
Sbjct: 527 AIDQFNAPNSEKFCFLLSTRAGGLGINL-ATADIVILYDSDWNPQ-----VDLQAQDRAH 580

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 581 RIGQKKEVQVFRFCTEFTIEEKVIERAYKKLALDALVIQQGR 622


>gi|328780249|ref|XP_396786.4| PREDICTED: hypothetical protein LOC413341 [Apis mellifera]
          Length = 2846

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +        + +   K +   V+I       + V   F +    +      
Sbjct: 1683 RLIQYDCGKLQ----SLHQLLRKLKSENHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 1738

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +D+    ++ +N + +I        S G G+NL  G + ++F+   W+       ++
Sbjct: 1739 TTKVDQRQVLMERFNGDKRIFCFILSTRSGGVGVNLT-GADTVIFYDSDWNPT-----MD 1792

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 R  + G  R V +Y L+++ T++E +L++   K  + DL +  
Sbjct: 1793 AQAQDRCHRIGQTRDVHIYRLVSEKTVEENILKKANQKRLLGDLAIEG 1840


>gi|237745383|ref|ZP_04575864.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
 gi|229432612|gb|EEO42824.1| SWF/SNF family helicase [Fusobacterium sp. 7_1]
          Length = 899

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|221486521|gb|EEE24782.1| DNA repair helicase rad5,16, putative [Toxoplasma gondii GT1]
          Length = 1667

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 29   TVKCLQLAN--GAVYYDEEKHWKEVHDE-----KIKALEVIIEKANAAPIIVAYHFNSDL 81
              + LQ A   G     ++    E           + L  I  +      +V   F S L
Sbjct: 1467 LSRLLQQAGKRGPDGIMQKIKASEFRSSTKIEALYQELLEIEREDTTVKSLVFSQFCSML 1526

Query: 82   ARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
              ++    +G               +        N+  + +L     + G GLNLQ   +
Sbjct: 1527 DLIEWRLKKGGIHCAKMVGSMSIVSRSNVLYAFNNDPSLKVLLISLKAGGEGLNLQ-IAS 1585

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +     WW+     Q I+R     QR     + V     IA+ TI+E +LQ    K  +
Sbjct: 1586 RIFLMDPWWNPAAEMQAIQRAHRIGQRH----KEVIAIRFIAEKTIEERILQLQEKKQLV 1641

Query: 191  QDLLLNA 197
             D  + A
Sbjct: 1642 FDGTVGA 1648


>gi|68491912|ref|XP_710254.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|68491929|ref|XP_710247.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|74679547|sp|Q59KI4|INO80_CANAL RecName: Full=Putative DNA helicase INO80
 gi|46431413|gb|EAK90982.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|46431421|gb|EAK90989.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
          Length = 1387

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              K+  L+ ++   K     I++ +     +   ++                T++     
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1294

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+       I+   + R  + 
Sbjct: 1295 VQAWQTNPEIFIFMLSTRAGGLGLNLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRI 1348

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1349 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1387


>gi|296194069|ref|XP_002744792.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Callithrix
           jacchus]
          Length = 1713

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 725 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 784

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 785 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 844

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 845 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 898

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 899 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 942


>gi|225681829|gb|EEH20113.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1000

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWK----------------------EVHDEKIKA 58
            + ++        +L N     + +   +                           KI+ 
Sbjct: 612 NSDSALQLITILKKLCNSPSLLNPKSSDEDSTSTLSSLVASLPSSITRRLTPASSGKIRV 671

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L K                   K    + ++N
Sbjct: 672 LDQLLHNIRHTTSEKVVLISNYTSTLDLLGKLLTSLSLPFLRLDGSTPAAKRQALVDDFN 731

Query: 106 EGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + LV F + W+     Q + RI      + G K
Sbjct: 732 RSSPTSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDGQK 785

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y  + +  ++E + QR  TK  + D +++
Sbjct: 786 RHCRIYRFLLKGALEEKIWQRQVTKIGLADSVMD 819


>gi|302307844|ref|NP_984605.2| AEL256Cp [Ashbya gossypii ATCC 10895]
 gi|299789196|gb|AAS52429.2| AEL256Cp [Ashbya gossypii ATCC 10895]
          Length = 1866

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 73/253 (28%), Gaps = 64/253 (25%)

Query: 2    KQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            + Y  F ++    ++ +           +         +L N       + H +      
Sbjct: 1541 QLYKDFAKKQKNIVERDIENTMELESKNHIFQALQYMRKLCNHPSLVLSKDHPQYNQVQD 1600

Query: 51   ------------VHDEKIKALEVIIEKA---------------------NAAPIIVAYHF 77
                         H  K+ AL  ++ +                      +    ++    
Sbjct: 1601 YLSQTGMDIHDIAHAPKLGALRNLLLECGIGVQDVDQNSISLPSSENVISQHRALIFCQL 1660

Query: 78   NSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
               L                                ++++N +  I  L       G GL
Sbjct: 1661 KDMLDMIENDLFKKYLPSVTYMRLDGSVESRDRQKVVRKFNEDPSIDCLLLTTKVGGLGL 1720

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL  G + ++F    W+      M +   + R  + G K+ V VY +I + +++E ++  
Sbjct: 1721 NLT-GADTVIFIEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIITKGSLEEKIMGL 1774

Query: 184  LRTKSTIQDLLLN 196
             + K  I   ++N
Sbjct: 1775 QKFKMNIASTVVN 1787


>gi|325088120|gb|EGC41430.1| chromodomain helicase [Ajellomyces capsulatus H88]
          Length = 1530

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y +    + V+             K++ LE+++ K       +++  
Sbjct: 950  LMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFS 1009

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1010 QFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQKQIDEFNVPGSPYFAFLLSTRSGGVGI 1069

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +V     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++Q 
Sbjct: 1070 NL-ATADTVVIMDPDFNPHQ-----DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQM 1123

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L+  +  E
Sbjct: 1124 GKKKMALDQVLIEHMDVE 1141


>gi|322708300|gb|EFY99877.1| ISWI chromatin-remodeling complex ATPase ISW2 [Metarhizium
           anisopliae ARSEF 23]
          Length = 869

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 29/214 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---KHWKEVHDEKIKALEV 61
            + +R    +L  + +      +   +   + N    +           V +  I     
Sbjct: 574 EEVERAQTLELAKKQLAQKKLGNPLAQLRLVCNSPHNFYNPWATSTHIPVDESIITCSGK 633

Query: 62  IIEKAN--------AAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTI 101
           ++               +++   F        D +R  + +   R         +     
Sbjct: 634 MLLLDRLLQKLFDRGHKVLLFSQFKTQLDILEDYSRELRGWNVCRIDGSVPQDSRRQQIH 693

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    L      + G G+NL    + ++ F   ++ ++     +     R  + G 
Sbjct: 694 DFNNDADYNLFLLSTRAGGQGINL-ASADTVILFDSDFNPQQ-----DLQAQDRCHRIGQ 747

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V VY L  ++T++E +L     K  ++ L++
Sbjct: 748 TRPVIVYRLATKDTVEESLLMSADAKRRLEKLVI 781


>gi|302667512|ref|XP_003025339.1| SWI/SNF family DNA-dependent ATPase, putative [Trichophyton
            verrucosum HKI 0517]
 gi|291189444|gb|EFE44728.1| SWI/SNF family DNA-dependent ATPase, putative [Trichophyton
            verrucosum HKI 0517]
          Length = 1167

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 997  SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRND 1056

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1057 SVLDFTDNPDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1110

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1111 IGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALDE 1149


>gi|238498532|ref|XP_002380501.1| chromodomain helicase (Chd1), putative [Aspergillus flavus
           NRRL3357]
 gi|220693775|gb|EED50120.1| chromodomain helicase (Chd1), putative [Aspergillus flavus
           NRRL3357]
          Length = 1446

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 689 LEYYKNILTKNYAALNDGAKGQKQSLLNIMMELKKASNHPFMFPNAEAKILDGSTRREDV 748

Query: 52  ------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L +    +G T  +      
Sbjct: 749 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIP 808

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 809 AASRRLAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 862

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 863 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 901


>gi|154303896|ref|XP_001552354.1| hypothetical protein BC1G_08832 [Botryotinia fuckeliana B05.10]
 gi|150854416|gb|EDN29608.1| hypothetical protein BC1G_08832 [Botryotinia fuckeliana B05.10]
          Length = 612

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 21/177 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA----------RLQ 85
           G   Y            K      ++   +      I+   F + L              
Sbjct: 426 GHRKYMRYLRKNWQSSGKTDKCVELLEKFQNEGEKTIIFSQFVTFLDLLQVPIGEKGWKC 485

Query: 86  KAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           + +       +    I+ + +     ++     +   GLNL    + ++    +W+    
Sbjct: 486 ERYDGSINSKRRDEAIKRFQDKPDCNIMLISLKAGNAGLNLTA-ASRVIILDPFWNP--- 541

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALK 199
              IE   V R  + G  + V V+ ++ Q T+++ +++  R K ++ +  L+  A+K
Sbjct: 542 --FIEMQAVDRAYRIGQMKTVQVHRILVQETVEDRIMELQRQKKSLVESALDEGAMK 596



 Score = 38.2 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 3/50 (6%), Positives = 10/50 (20%), Gaps = 6/50 (12%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVYYDEEKH 47
           Y   + +             +     N     ++  Q         + + 
Sbjct: 147 YQALKDKTQLQFNKYRKAGTVGKNYSNILVLLLRLRQCCCHPHLIIDLEE 196


>gi|138894942|ref|YP_001125395.1| Patative DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|196248491|ref|ZP_03147192.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
 gi|134266455|gb|ABO66650.1| Patative DNA/RNA helicase SNF2 family [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212216|gb|EDY06974.1| Non-specific serine/threonine protein kinase [Geobacillus sp.
           G11MC16]
          Length = 874

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 29/211 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA---VYYDEEKHWKEVHDEKIKALEV 61
            +  R +    +   +   N      +  QL       +   E+  +KEV   K     +
Sbjct: 650 KEIARSMLATKESGQVAILN---MITRLRQLYGHPGAIIPKYEQLSYKEVPKLKETMHII 706

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR---------TLDKDPCTIQEWNEGKIP-L 111
              +      ++   F      L++ F +                   +Q +NE +   +
Sbjct: 707 EAIRQKGEKALIFTEFRKLHFLLKRIFMETYGISVPVIDGDTKNRQLIVQHFNETQGFGI 766

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +   P + G GL +    N ++ ++ WW+       +E     R  + G ++ V+VY++I
Sbjct: 767 MILSPKAAGVGLTITS-ANHVIHYTRWWNPA-----VENQATDRAYRIGQQKDVYVYHII 820

Query: 172 AQ-------NTIDELVLQRLRTKSTIQDLLL 195
            +        T++EL+ + L +K  + + ++
Sbjct: 821 TRDSSHFPQGTVEELMHELLESKRHLAENVI 851


>gi|73951996|ref|XP_848459.1| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 2 [Canis familiaris]
          Length = 1711

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 722 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 781

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 782 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 841

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 842 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 895

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 896 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 939


>gi|260495666|ref|ZP_05815790.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
 gi|260196849|gb|EEW94372.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_33]
          Length = 899

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y + ++  Y  L+       N           +   + +      E +  K +  +K 
Sbjct: 680 RFYEERRKYYYSLLEKNTSSQGNFDKFFVLQAINELRHIVSSP----ELESKKIISSKKE 735

Query: 57  KALEVIIEK-ANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNE 106
             +E +IE   N   ++V  ++ S +          +++     G+T D+     +  N+
Sbjct: 736 VLIENVIEAIENNHKVLVFVNYLSSIESICDSLKENKIKYLKMTGQTKDRQNLVDKFQND 795

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +      + G GLNL    + +  +  WW+       +E   + R  + G  + VF
Sbjct: 796 SRYKVFVMTLKTGGVGLNLVS-ADTIFIYDPWWN-----TTVENQAIDRAYRLGQDKTVF 849

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            Y +I +NTI+E +L+    K+ + D L++   
Sbjct: 850 AYKMIMRNTIEEKILKLQEIKNKLLDDLISEDN 882


>gi|115781768|ref|XP_783354.2| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein [Strongylocentrotus purpuratus]
 gi|115939876|ref|XP_001181420.1| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein [Strongylocentrotus purpuratus]
          Length = 1637

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             +          + +    I  +N      I L      +   G+NL  G N +V    
Sbjct: 865 RNQTYFRLDGSTAVSEREKMINRFNSPDNKTIMLFLLSTKAGCLGINL-IGANRVVVMDA 923

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G  +   VY L++  T+++ +  R  +K  + D +++ 
Sbjct: 924 SWNP-----CHDAQAVCRVYRYGQTKKCHVYRLVSDQTLEKKIYDRQISKKGMSDRVVDE 978

Query: 198 LKKET 202
           +  E 
Sbjct: 979 MNPEM 983


>gi|322694287|gb|EFY86121.1| ISWI chromatin-remodeling complex ATPase ISW2 [Metarhizium acridum
           CQMa 102]
          Length = 870

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 71/214 (33%), Gaps = 29/214 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEK 55
            + +R    +L  + +      +   +   + N    +                     K
Sbjct: 575 EEVERAQTLELAKKQLAQKKLGNPLAQLRLVCNSPHNFYNPWATSTDIPVDESIITCSGK 634

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQGRTL------DKDPCTI 101
           +  L+ +++K       +++   F        D +R  + +   R         +     
Sbjct: 635 MLLLDRLLQKLFDRGHKVLLFSQFKTQLDILEDYSRELRGWNVCRIDGSVPQDSRRQQIH 694

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    L      + G G+NL    + ++ F   ++ ++     +     R  + G 
Sbjct: 695 DFNNDADYNLFLLSTRAGGQGINL-ASADTVILFDSDFNPQQ-----DLQAQDRCHRIGQ 748

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V VY L  ++T++E +L     K  ++ L++
Sbjct: 749 TRPVIVYRLATKDTVEESLLMSADAKRRLEKLVI 782


>gi|300175679|emb|CBK21222.2| unnamed protein product [Blastocystis hominis]
          Length = 523

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 28/220 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHD 53
           + Y K     Y  +     E  +  +  ++  ++A     +        D        + 
Sbjct: 247 ELYKKVLVNDYESIVNSRAERSHLLNLLMQLRKVAGHPYLFEGVEDRSLDPMGEHVITNC 306

Query: 54  EKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+      +   K   + +++       L  L+                         I
Sbjct: 307 GKMVLLDKLLKRLKEKGSRVLLFSQMRRVLDILEDYCNIRGFEYCRIDGSTESVDREEEI 366

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N       +      + G G+NL    + ++ +   W+ +     ++     R  + 
Sbjct: 367 NSFNAENSTKFVFLLSTRAGGLGINL-ATADTVILYDSDWNPQ-----MDLQAEDRAHRI 420

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V VY L+ + T++E++++R + K  +  L++   +
Sbjct: 421 GQKKTVNVYRLVTEGTVEEMIVERAKLKLRLDTLVIQQGR 460


>gi|225559059|gb|EEH07342.1| SHREC complex subunit Mit1 [Ajellomyces capsulatus G186AR]
          Length = 1530

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y +    + V+             K++ LE+++ K       +++  
Sbjct: 950  LMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFS 1009

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1010 QFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQKQIDEFNVPGSPYFAFLLSTRSGGVGI 1069

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + +V     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++Q 
Sbjct: 1070 NL-ATADTVVIMDPDFNPHQ-----DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQM 1123

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L+  +  E
Sbjct: 1124 GKKKMALDQVLIEHMDVE 1141


>gi|313213982|emb|CBY40778.1| unnamed protein product [Oikopleura dioica]
          Length = 867

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            + +Q   G +    +  ++++   +      +I       + V   F S  A       
Sbjct: 453 TRLIQYDCGKLQTLHDLIYQKL---RPNGHRALIFTQMTKMLDVLERFLSYHALTYSRLD 509

Query: 90  QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +K    ++ +N + KI  +     S G G+NL  G + ++F+   W+       I
Sbjct: 510 GSTAPEKRIQIMETFNRDPKIFCMILSTRSGGVGVNLT-GADTVIFYDSDWNPT-----I 563

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-------LKKE 201
           +     R  + G  R V +Y  IA++TI+E +L++   K  + ++ +         LK++
Sbjct: 564 DAQAQDRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIEEGRFNIEGLKED 623

Query: 202 TIHV 205
            + V
Sbjct: 624 QLRV 627


>gi|115436572|ref|NP_001043044.1| Os01g0367900 [Oryza sativa Japonica Group]
 gi|57012942|sp|Q7G8Y3|ISW2_ORYSJ RecName: Full=Probable chromatin-remodeling complex ATPase chain;
           AltName: Full=ISW2-like; AltName: Full=Sucrose
           nonfermenting protein 2 homolog
 gi|54290802|dbj|BAD61441.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|57900237|dbj|BAD88342.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|58737200|dbj|BAD89475.1| putative DNA-dependent ATPase SNF2H [Oryza sativa Japonica Group]
 gi|113532575|dbj|BAF04958.1| Os01g0367900 [Oryza sativa Japonica Group]
 gi|215740512|dbj|BAG97168.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618445|gb|EEE54577.1| hypothetical protein OsJ_01780 [Oryza sativa Japonica Group]
          Length = 1107

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 469 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 528

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                       
Sbjct: 529 ENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 588

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    +++V +   W+ +      +     R 
Sbjct: 589 ASIEAFNKPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQA-----DLQAQDRA 642

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 643 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 685


>gi|254582196|ref|XP_002497083.1| ZYRO0D15026p [Zygosaccharomyces rouxii]
 gi|238939975|emb|CAR28150.1| ZYRO0D15026p [Zygosaccharomyces rouxii]
          Length = 1216

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 29/218 (13%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y +   + +               +  +  Q   G V  +       V   K+     +
Sbjct: 996  LYDQVVNQGFTQEDLHAEYQREMERQKSRL-QGTRGPVMEN------LVPSTKMLQCMKL 1048

Query: 63   IEKANAA----PIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQEW-NE 106
            +           I+V   F +           DL      +       +    I  +  E
Sbjct: 1049 VRNVVEKSDFEKILVFSQFTTFFDLFEQFLSKDLQVSYLKYTGSMNSQQRSDIISRFYRE 1108

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     +   GL L    N ++    +W+       +E     R  +    R VF
Sbjct: 1109 SDKRVLLISMKAGNSGLTLT-CANHVIIVDPFWNP-----FVEEQAQDRCYRISQTREVF 1162

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V+ L  +N++++ + +  + K  + D  ++  K + I+
Sbjct: 1163 VHRLFIKNSVEDRIAELQKRKRDMVDAAMDPSKMDGIN 1200


>gi|167378232|ref|XP_001734726.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165903652|gb|EDR29108.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 884

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 65/212 (30%), Gaps = 36/212 (16%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------VHDEKIKALEVI------- 62
           +G++ +            +++N      +            +   +      +       
Sbjct: 552 KGKDEKKSCQFQILTALKKVSNHPWLIQDFVKTFPEVLDGILPKGEALWDMELSGKTAFL 611

Query: 63  -----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEG 107
                  + +   I++  ++   L  +     +               K    +  +N  
Sbjct: 612 AKLLAFLRKHKEKIVIVSNYTETLNFIAHHCKKCGYPYIQLDGSVAATKRTQMVNRFNNP 671

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           ++   +      + G GLNL  G N++  F   W+        +   + R  + G K+  
Sbjct: 672 ELDEFIFLLSSKAGGCGLNLVGGANLV-MFDPDWNPAN-----DEQAMGRVWRDGQKKKC 725

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y  ++  T++E + QR   K  +   ++  
Sbjct: 726 HIYRTLSAGTVEEKMYQRQIKKLELAGKVVEG 757


>gi|157134598|ref|XP_001663322.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108870420|gb|EAT34645.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 340

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVH 52
           K Y       +  L       A +  +  +   +  N    +               E+ 
Sbjct: 36  KYYKYILTRNFEALNPRGGGGACSLINIMMDLKKCCNHPYLFQAAVEEAPLGPGGSYEIQ 95

Query: 53  D-----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                  K+  LE ++++       +++       L  L+          +         
Sbjct: 96  SLTKAAGKLVLLEKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGFGYKYERIDGGITGT 155

Query: 98  --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 156 LRQEAIDRFNAPGAQQFCFLLSTKAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 209

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G    V +Y  + +N+++E V Q  + K  +  L++
Sbjct: 210 SRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 251


>gi|320592804|gb|EFX05213.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407]
          Length = 901

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 63/217 (29%), Gaps = 33/217 (15%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R    ++    I      +  ++   + N    +       E  +      E I+  
Sbjct: 596 EIERAQTLEVAKREIGNKKLGNPLMQLRLVCNSPHNFYNPWLAGEEAEADQPIDESIVTA 655

Query: 66  AN---------------AAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPC 99
           +                   +++   F                                 
Sbjct: 656 SGKMLLLDRLLPSLFERGHKVLIFSQFKTQLDLLEAYCAELRGWAVCRIDGSVAHADRQS 715

Query: 100 TIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N      L      + G G+NL    + ++ F   W+ ++     +     R  +
Sbjct: 716 QIELFNADAAHRLFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRAHR 769

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  R V VY L  + T++E +L     K  ++ L++
Sbjct: 770 IGQTRPVVVYRLATKGTVEEELLLSADAKRRLEKLVI 806


>gi|317140694|ref|XP_001818358.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1126

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
            K+ + +   KI  L  ++   K N    ++   F   +  L+                  
Sbjct: 936  KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 995

Query: 94   LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N +V F   ++ +      +   
Sbjct: 996  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQ-----EDVQA 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G  R V V  L+ ++TI+E +    +TK  +   +      E
Sbjct: 1050 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAVAGEDAGE 1098


>gi|146419691|ref|XP_001485806.1| hypothetical protein PGUG_01477 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1895

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 65/244 (26%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------------- 50
              D +       +         +L N        +H K                      
Sbjct: 1576 RLDGKEGGESNTHVFQALQYMRKLCNHPALVVSPEHPKFNEVNEYLRINKSDIRSINHAP 1635

Query: 51   ------------------------VHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR--- 83
                                      ++K++         +    ++       L     
Sbjct: 1636 KLLSLRTLLLECGIGVDDSDYIGKGKNKKLQQQITAEGVISDHRALIFCQLKDMLDIVEN 1695

Query: 84   ----------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNIL 132
                                       ++++N +  I +L       G GLNL  G + +
Sbjct: 1696 ELLKKHLPSVTYMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLT-GADTV 1754

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +F    W+      M +   + R  + G K+ V VY LI ++T++E ++   + K  I  
Sbjct: 1755 IFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKHTLEEKIMGLQKFKMNIAS 1809

Query: 193  LLLN 196
             ++N
Sbjct: 1810 TVVN 1813


>gi|328767223|gb|EGF77273.1| hypothetical protein BATDEDRAFT_91624 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 641

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNE 106
            ++ I         IV   F   L  ++           +         +D    +  ++
Sbjct: 473 HVKAIRISHPGEKTIVFSQFTKMLDLIETPLGQNNIKFTRYDGSMHAKQRDDSIRRFRDD 532

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I ++         GLNL    N ++   LWW+       +E   + R  + G  + V 
Sbjct: 533 PDILVILVSLKCGSLGLNLT-CANRVILTDLWWNPA-----VENQAIDRAHRFGQTKDVI 586

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V+ ++ +N++++ +L+  + K  I +  L   +
Sbjct: 587 VHRIMIKNSVEDRILELQQRKQDIANQALGEGE 619


>gi|261329556|emb|CBH12538.1| DNA excision repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1126

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
                  +        K++ L  ++   +      +V     + L  ++    Q      
Sbjct: 783 HFSMRSNRPVNYEGSSKLQTLRQLLKLWQRGGQRALVFSQTRAMLDIIENMCEQESLTYI 842

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    +  +N + +I +        G G+NL  G + +V F   W+     
Sbjct: 843 RMDGTTNSLRRQELMDRFNEDDRIVVALLTTRVGGVGVNL-IGADRVVIFDPDWNP---- 897

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + +     R  + G  R V VY LI+  T++E VL+R   K+ + + +L+  K
Sbjct: 898 -VTDEQARERAWRIGQTRDVGVYRLISSGTVEEAVLRRQLAKTYVTEKVLHDPK 950


>gi|320583294|gb|EFW97509.1| helicase [Pichia angusta DL-1]
          Length = 794

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 36/206 (17%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHW--------------KEVHDEKIKALEVII---E 64
           A +S        ++ N      E+  +               +V   KI  L  ++    
Sbjct: 475 ANDSLQLITTFRKICNSPALLTEDAMFAGLCGVDDLRGELGSKVRSAKIILLVKLLKGIY 534

Query: 65  KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNE---GKIPL 111
           K     ++V  +F   L                       +     + ++N+       +
Sbjct: 535 KLKQEKVVVVSNFTQTLDVLEKLMNVLELPFTRLDGATPANLRDKIVSDFNKASWDMSFV 594

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 S G GLNL  G + L+ F   W+       ++   + R  + G  R V VY L+
Sbjct: 595 FLLSAKSGGMGLNL-VGASRLILFDNDWNPA-----VDLQAMARVHRDGQTRPVHVYRLL 648

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
               IDE + QR   K+++ D  L+ 
Sbjct: 649 TAGCIDEKIFQRQLIKTSLSDKFLDD 674


>gi|156059716|ref|XP_001595781.1| hypothetical protein SS1G_03871 [Sclerotinia sclerotiorum 1980]
 gi|154701657|gb|EDO01396.1| hypothetical protein SS1G_03871 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2189

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y        +              K + LE+++ K       +++  
Sbjct: 1138 LMQLRKCLCHPFLYSSAIEETSLSHEALHRNLIDASSKFQLLEIMLPKLQARGHRVLIFS 1197

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F   L  ++          +              I  +N     L        + G G+
Sbjct: 1198 QFLKQLDLVEDFLNGLELPFQRLDGTVSTLEKQKRIDAFNAPNSKLFAFLLSTRAGGVGI 1257

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ + + +E ++Q 
Sbjct: 1258 NL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQKKKVLVFQLVTKGSAEEQIVQV 1311

Query: 184  LRTKSTIQDLLLNAL 198
             R K  +   L+ ++
Sbjct: 1312 GRKKMALDQALIESI 1326


>gi|219128668|ref|XP_002184529.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403979|gb|EEC43928.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 479

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 31/218 (14%)

Query: 4   YHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------VH 52
           Y          L        A +  +  ++  +  N        +               
Sbjct: 265 YKAIYERNTSFLFKGTKPSNAPSLMNVMMELRKCCNHPYLVKGAEDRILNEAAAKQLVKS 324

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------T 100
             K+  +E +++K       ++V       L  L++     R   +              
Sbjct: 325 SGKMVLMEKLLQKLFDGGHKVLVFSQMVRVLDLLEELLKLKRYKYERLDGSTTSSARLSA 384

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N       ++     + G GLNL    +I++ F   W+ +      +   + R  +
Sbjct: 385 VDRFNRKSCQRFVMLLSTRAGGLGLNLTA-ADIVIIFDSDWNPQN-----DLQAMARAHR 438

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  RAV VY L+   T +  +      K  ++  +L+
Sbjct: 439 IGQTRAVRVYRLLTAKTYEMHMFHSASLKLGLERAVLS 476


>gi|145512399|ref|XP_001442116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409388|emb|CAK74719.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1659

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 38/225 (16%)

Query: 3    QYHKFQRELYCDLQGENIE-AFNSASKTV---KCLQLANGAVYYDEEKHWKEV------- 51
             Y          L+    + A N+AS      +  +  N      E ++           
Sbjct: 805  IYKALYDRNKSMLEQGFSQWAANAASLNNLEIQLRKCCNHPFLIQEMQNDLSKGCQTKID 864

Query: 52   -------HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK------ 96
                      K+  L+ ++ K       +++   F   L+ L++     +   +      
Sbjct: 865  YINKLVESSGKMILLDKLLNKFRSEGKKMLIFSQFTMMLSILEEYLKFKQVKYEKIDGQI 924

Query: 97   ----DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    I  +N+      +      + G G+NL     I+V +   W+ +      + 
Sbjct: 925  KARERSNAIDRFNDPSKKREVFLLSTKAGGQGINLTA-AEIVVIYDSDWNPQN-----DV 978

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                R  + G  + V VY LI ++T +  + +R   K  +   + 
Sbjct: 979  QATARAHRIGQSKEVTVYRLITKDTYEAEMFERAIKKLGLDQAIF 1023


>gi|238879929|gb|EEQ43567.1| hypothetical protein CAWG_01805 [Candida albicans WO-1]
          Length = 1388

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              K+  L+ ++   K     I++ +     +   ++                T++     
Sbjct: 1236 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1295

Query: 101  IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +Q W    +I +      + G GLNL    + ++F+   W+       I+   + R  + 
Sbjct: 1296 VQAWQTNPEIFIFMLSTRAGGLGLNLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRI 1349

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G  + V V+ L+ +NTI++ +L+R + K  IQ L++  +
Sbjct: 1350 GQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVVGNM 1388


>gi|195146980|ref|XP_002014461.1| GL19201 [Drosophila persimilis]
 gi|198473550|ref|XP_001356340.2| GA19213 [Drosophila pseudoobscura pseudoobscura]
 gi|194106414|gb|EDW28457.1| GL19201 [Drosophila persimilis]
 gi|198138009|gb|EAL33403.2| GA19213 [Drosophila pseudoobscura pseudoobscura]
          Length = 833

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
           QL N   +              K + L+ ++ K       +++   F   L  +++    
Sbjct: 618 QLCNKHEMTDVRIPDELICDSGKFEFLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYMRI 677

Query: 91  GRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            +             +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 678 RKHGFCRLDGATAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 736

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y L+A++TI+E +L     K  ++  + +  K
Sbjct: 737 NP-----YNDKQAEDRCHRMGQQRPVTIYRLVAESTIEEGILMAAEEKLKLEKEITSTEK 791

Query: 200 KET 202
            E 
Sbjct: 792 GEG 794


>gi|241948531|ref|XP_002416988.1| ATP-dependent chromodomain helicase, putative; chromodomain protein
           1, putative [Candida dubliniensis CD36]
 gi|223640326|emb|CAX44576.1| ATP-dependent chromodomain helicase, putative [Candida dubliniensis
           CD36]
          Length = 1406

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y     + Y  L  G      +  +   +  + +N    +D  +              
Sbjct: 601 EYYKNIITKNYAALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEEKVLDKEGSHSREN 660

Query: 53  --------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                     K+  LE ++   K     +++       L  L                  
Sbjct: 661 TLKGIVMSSGKMVLLEQLLSRLKKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTV 720

Query: 93  TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              K    I  +N              + G G+NL    + ++ F   W+ +      + 
Sbjct: 721 PSSKRKIAIDHFNALGSKDFAFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 774

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 775 QAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIIS 820


>gi|332029993|gb|EGI69818.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
            [Acromyrmex echinatior]
          Length = 1852

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 28/210 (13%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L      +  +  +  +   +  N    +               E  
Sbjct: 877  KYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYETS 936

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   K+  L  +++K   +   +++       L  L+          +     Q++ 
Sbjct: 937  ALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGAQQF- 995

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +      + G G+NL    + ++ +   W+        +    +R  + G    V
Sbjct: 996  -----VFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRAHRIGQANKV 1044

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Y  + +N+++E V Q  + K  +  L++
Sbjct: 1045 MIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1074


>gi|289617844|emb|CBI55421.1| unnamed protein product [Sordaria macrospora]
          Length = 1667

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y       Y  L    N    +  +  ++  +++N    +   +                
Sbjct: 723 YKNILTRNYAALSDASNGHKQSLLNIMMELKKVSNHPYMFQGAEERVLNGSTRREDQIKG 782

Query: 51  --VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 783 LITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILGDYLRVRGYQFQRLDGTIPAGP 842

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ +   W+ +      +   + 
Sbjct: 843 RRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DLQAMA 896

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 897 RAHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 939


>gi|327295002|ref|XP_003232196.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
 gi|326465368|gb|EGD90821.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
          Length = 923

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 534 NSESALQLITILKKVCNSPSLLKPKVEDNGKCEDTSMSALLSSLPPSIHRCLAAGSSGKI 593

Query: 57  KALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++    +     +++  ++ S L  L                     +    +++
Sbjct: 594 RVLDQLLYNLQSKTTEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPATRRQALVED 653

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 654 FNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 707

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 708 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 743


>gi|324500342|gb|ADY40163.1| Chromodomain-helicase-DNA-binding protein 8 [Ascaris suum]
          Length = 1811

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 42/231 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKIKAL 59
            K Y       +  L        +  +  ++  +  N     +  EE+   E+        
Sbjct: 1331 KYYRAILERNFSHLCKGT-SVPSLMNTMMELRKCCNHPFLINGAEEQIISEMKTVHPDWS 1389

Query: 60   EVIIEKA---------------------NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
            E  + +                      +   +++       L  +++         +  
Sbjct: 1390 EEELYQHALVQSSGKLVLIAKLLPKLRADGHKVLIFSQMVRVLDIIEEFLVVQNYTFERI 1449

Query: 98   ---------PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +   +    +      + G G+NL    + ++ F   W+ +    
Sbjct: 1450 DGNVRGDLRQTAIDRFSKKDSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1505

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G  + V VY LI  NT +  +  +   K  +   +L +
Sbjct: 1506 --DLQAQARCHRIGQTKMVKVYRLITCNTYEREMFDKASLKLGLDKAVLQS 1554


>gi|115389796|ref|XP_001212403.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194799|gb|EAU36499.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1503

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 63/198 (31%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALEVIIEKANAAPIIVAY 75
             ++  +       Y E    +                  K+  L +         +++  
Sbjct: 875  LMQLRKCLCHPFVYSEAIEERTGDPAASFRRLVDAAGKLKLLELMLPKLHQRGNRVLIFS 934

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++          +              I E+N    P         S G G+
Sbjct: 935  QFLDNLNIIEDFLDGLGLRHRRLDGRMTSLEKQKMIDEYNAEDSPYFAFLLSTRSGGVGI 994

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + + +E ++Q 
Sbjct: 995  NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMTRGSAEEKIMQI 1048

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L++ +  +
Sbjct: 1049 GKKKMVLDHVLIDRMVSD 1066


>gi|320167296|gb|EFW44195.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
          Length = 2352

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 41/232 (17%)

Query: 2    KQYHKFQRELYCDL--------QGENIEAFNSASKTVKCLQLANGAVY----------YD 43
            + Y     E    L        +  +  A N  +  ++  ++ N               +
Sbjct: 1497 ELYKALLFENVTYLATLSSTGNKPGHKSALN--NVLMELRKILNHPFCRDGIEPEFATEE 1554

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN------SDLAR-----LQKAFPQ 90
            E          K+  L +++ +  A    +++   F        D               
Sbjct: 1555 EMNTALIEASGKLLLLHIMLPRLLAAGHRVLIFSTFKIVLDVLHDYLIANGYPDFCRLDG 1614

Query: 91   GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                D     I  +N  E  + +      + G G+NL Y  + ++ F   ++ +  Q   
Sbjct: 1615 DSPSDTRQHLIDRFNRREEGLNIFMLSTRAGGLGINL-YTADTVILFDSDFNPQADQ--- 1670

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                + R  + G    V  Y  +   T++E +  R ++K  ++ ++++++ K
Sbjct: 1671 --QAIARAHRHGQTHPVVAYRFVTVGTVEEAIWTRSQSKLFLEHVVVDSMSK 1720


>gi|168029897|ref|XP_001767461.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681357|gb|EDQ67785.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1569

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 73/227 (32%), Gaps = 38/227 (16%)

Query: 2   KQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYYDEEKH------------- 47
           + Y       + DL     +   +  +  V+  +  N    ++   H             
Sbjct: 644 QYYKWILERNFNDLNKGVRVNQVSLLNIVVELKKCCNHPFLFESADHGYGGDANMNDNNK 703

Query: 48  --WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                +   K+  L+ ++   K     +++       L  L           +       
Sbjct: 704 VQRIVLSSGKLAILDKLLIRLKETNHRVLIFSQMVKMLDILADYMSLRGFQFQRLDGSTR 763

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 764 SDLRHQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 817

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            ++R  + G +  V +Y  +   +++E +L+R + K  + + +L+ L
Sbjct: 818 AMSRAHRIGQRDVVNIYRFVISRSVEEDILERAKKK--MANRVLDHL 862


>gi|133778670|gb|AAI33862.1| Hells protein [Danio rerio]
          Length = 270

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 29/190 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            +  N A   +                     K   L+ ++ +       +++     S 
Sbjct: 1   KRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQMTSI 60

Query: 81  LARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
           L  L                     D+D    +  ++ ++ L      + G G+NL    
Sbjct: 61  LDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINLTS-A 119

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ F   W+ +      +     R  + G  + V VY LI  NTIDE +L+R   K  
Sbjct: 120 DTVIIFDSDWNPQA-----DLQAQDRCHRIGQTKPVVVYRLITANTIDEKILERASAKRK 174

Query: 190 IQDLLLNALK 199
           ++ ++++  K
Sbjct: 175 LEKMVIHKNK 184


>gi|74149099|dbj|BAE32198.1| unnamed protein product [Mus musculus]
          Length = 895

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 34/222 (15%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 591 KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 650

Query: 61  VII---------------EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
            +I                K     +++       L  L+               G T +
Sbjct: 651 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 710

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 711 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 764

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 765 SRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 806


>gi|19114572|ref|NP_593660.1| ATP-dependent DNA helicase Hrp1 [Schizosaccharomyces pombe 972h-]
 gi|15214054|sp|Q9US25|HRP1_SCHPO RecName: Full=Chromodomain helicase hrp1; AltName:
           Full=ATP-dependent helicase hrp1
 gi|6714825|emb|CAB66168.1| ATP-dependent DNA helicase Hrp1 [Schizosaccharomyces pombe]
          Length = 1373

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 81/226 (35%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYD---------------E 44
           + Y     + Y  L G        +  +  V+  +++N    +                +
Sbjct: 635 EWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTRED 694

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                 ++  K+  L+ +++  K +   +++       L  L +         +      
Sbjct: 695 TLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTI 754

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  +I  +N    P  +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 755 PASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINL-NTADTVIIFDSDWNPQA-----DL 808

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 809 QAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIIS 854


>gi|307107878|gb|EFN56119.1| hypothetical protein CHLNCDRAFT_144734 [Chlorella variabilis]
          Length = 1822

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALE 60
           + Y       Y  L           +  ++  +      + +            K+K   
Sbjct: 579 QVYRSILTHSYESLTRGGTSKLK--NVMMELRKAVQHVYLLFHPPTPRPTGPPWKLK--- 633

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP 110
                     +++   F   L  L+                    +    I  +N     
Sbjct: 634 ------PGHRVLIYSQFLLMLDVLEWYCAARGHSYLRLDGSVGTAERQRRIDAFNGQPSR 687

Query: 111 LLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                    + G G+NL    + +V +   W+        +     R  + G    V VY
Sbjct: 688 YFLFLLSTRAGGLGINL-ATADTVVLYDSDWNP-----HNDLQAQARAHRLGQSSGVMVY 741

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            L+A+ T++E ++QR + K  ++ +++  +K++ 
Sbjct: 742 RLVARATVEERMMQRAKGKLVLEHVVVRKMKRQP 775


>gi|4056413|gb|AAC97987.1| SN24_HUMAN [Homo sapiens]
          Length = 661

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 194 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 253

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 254 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 313

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 314 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 369

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 370 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 418


>gi|302773596|ref|XP_002970215.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
 gi|300161731|gb|EFJ28345.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
          Length = 1901

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 16/192 (8%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
             E+  + + + +E        +  L                 V  + +     +IE    
Sbjct: 1336 EEILKESKRDVLENSGKMVLIMTLL------SLNSSRGEKTLVFSQSL-HTLDLIENFLD 1388

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNL 125
               +       +  +         T  +       +N+     I  L     +   G N+
Sbjct: 1389 TIPLGGSQDVWNKGKEWLRLDGNTTASRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNM 1448

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              G N ++     W+        +   + R  + G  + VFVY L+A  T++E +  R  
Sbjct: 1449 T-GANRVIIVDGSWNPTH-----DLQALFRAWRYGQTKPVFVYRLLAYGTMEEKIYNRQL 1502

Query: 186  TKSTIQDLLLNA 197
            TK  I   +L+A
Sbjct: 1503 TKEGIAARVLDA 1514


>gi|72391474|ref|XP_846031.1| DNA excision repair protein [Trypanosoma brucei TREU927]
 gi|62176576|gb|AAX70681.1| DNA excision repair protein, putative [Trypanosoma brucei]
 gi|70802567|gb|AAZ12472.1| DNA excision repair protein, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 1126

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
                  +        K++ L  ++   +      +V     + L  ++    Q      
Sbjct: 783 HFSMRSNRPVNYEGSSKLQTLRQLLKLWQRGGQRALVFSQTRAMLDIIENMCEQESLTYI 842

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    +  +N + +I +        G G+NL  G + +V F   W+     
Sbjct: 843 RMDGTTNSLRRQELMDRFNEDDRIVVALLTTRVGGVGVNL-IGADRVVIFDPDWNP---- 897

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + +     R  + G  R V VY LI+  T++E VL+R   K+ + + +L+  K
Sbjct: 898 -VTDEQARERAWRIGQTRDVGVYRLISSGTVEEAVLRRQLAKTYVTEKVLHDPK 950


>gi|66808133|ref|XP_637789.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60466223|gb|EAL64285.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2005

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 70/239 (29%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKIKALEVIIE 64
            A +         +L     +    +H +                   H  K+ +L+ ++ 
Sbjct: 1683 ATHIFQALQYLRKLCGHPSFVLNPEHPQYPSIMKEFKLQPNDILDIAHSPKLVSLKELLL 1742

Query: 65   KA---------------------------------NAAPIIVAYHFNSDLARLQK----- 86
            +                                  N   +++     S L  ++      
Sbjct: 1743 ECGIGLSNVQQQQHQQQSKAAIAAATANETINESTNQHRVLIFAQMKSMLDIVENELFKK 1802

Query: 87   --------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             K    + ++N +  I +L       G GLNL  G + ++F   
Sbjct: 1803 HLPSVTYLRMDGSVETMKRHSIVNQFNSDPTIDVLLLTTHVGGLGLNLT-GADTVIFLEH 1861

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY LI   T++E ++   + K  I + ++N
Sbjct: 1862 DWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIMGLQKFKLNIANTVIN 1915


>gi|307214999|gb|EFN89841.1| ATP-dependent helicase brm [Harpegnathos saltator]
          Length = 1322

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 43/232 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 754 LYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEHVGTQ 813

Query: 53  -------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                          K + L+ I+ K       +++       +  ++        +   
Sbjct: 814 GSGVITGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGFMYLR 873

Query: 96  --------KDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 874 LDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 930

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 931 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 979


>gi|170590139|ref|XP_001899830.1| Associated with TFs and helicases family protein [Brugia malayi]
 gi|158592749|gb|EDP31346.1| Associated with TFs and helicases family protein [Brugia malayi]
          Length = 2707

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 42/231 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKAL 59
            K Y       +  L        +  +  ++  +  N        +     EV        
Sbjct: 1304 KYYRAILERNFSHLCKGT-SVPSLMNAMMELRKCCNHPFLISGAEEQILAEVKAGHPDWS 1362

Query: 60   EVIIEKA---------------------NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
            E  I +                      +   +++       L  +++         +  
Sbjct: 1363 EDDIYQHALVQSSGKLVLIAKLLPKLRTDGHKVLIFSQMVRVLDIIEEFLVAQNYTFERI 1422

Query: 98   ---------PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +   +    +      + G G+NL    + ++ F   W+ +    
Sbjct: 1423 DGNVRGDLRQSAIDRFSKKDSDRFIFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN--- 1478

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G  + V VY LI  NT +  +  +   K  +   +L +
Sbjct: 1479 --DLQAQARCHRIGQTKMVKVYRLITCNTYEREMFDKASLKLGLDRAVLQS 1527


>gi|317155731|ref|XP_001825326.2| chromodomain helicase (Chd1) [Aspergillus oryzae RIB40]
          Length = 1513

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 689 LEYYKNILTKNYAALNDGAKGQKQSLLNIMMELKKASNHPFMFPNAEAKILDGSTRREDV 748

Query: 52  ------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L +    +G T  +      
Sbjct: 749 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIP 808

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 809 AASRRLAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 862

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 863 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 901


>gi|316965584|gb|EFV50276.1| 7 transmembrane receptor [Trichinella spiralis]
          Length = 2083

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 46/229 (20%)

Query: 2    KQYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHW------------ 48
            K +     E    L            +      ++                         
Sbjct: 1763 KLFETVAEEARLALDQGTAAGSEFCLTFLDYMRKICAHPAVLYNSLQQAVGRPNVTVLLS 1822

Query: 49   -----------KEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ-KAFPQGR 92
                       +     K+  L  ++     +  A  ++VA +F   L  ++      G 
Sbjct: 1823 CYPACFTDVGVRVGDSGKLTVLAQLLELVRRQYPAEKVVVASNFTESLNIIESYCNGMGF 1882

Query: 93   TLDK---------DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            +  +             +  +N       L      + G GLNL    N LV +   W+ 
Sbjct: 1883 SSFRLDGSTDVSSRQRMVDRFNTTTDDTFLFLLSTKAGGMGLNLTA-ANRLVLYDCDWNP 1941

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   +R  + R  + G +R   +Y L+   +I+E + QR   K  I
Sbjct: 1942 A-----YDRQAMARIWRDGQRRVCHIYRLLTTGSIEENIFQRQIRKDDI 1985


>gi|156062402|ref|XP_001597123.1| hypothetical protein SS1G_01317 [Sclerotinia sclerotiorum 1980]
 gi|154696653|gb|EDN96391.1| hypothetical protein SS1G_01317 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 892

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 66/207 (31%), Gaps = 29/207 (14%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEKIKALEVI 62
             +L  + I +    +  ++   + N  + +                     K+  L+ +
Sbjct: 603 ILELARKEISSKKLGNPVMQMRLVCNSPLNFYNPWSAGSVIPLNETLVTSSGKMLLLDRL 662

Query: 63  IEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT--LDKDPCTIQEWNEGK 108
           +         +++   F            +L   +     G      +     +   +  
Sbjct: 663 LPSLFSRGHKVLIFSQFKTQLDILEDYARELRGWKVCRIDGSVAQDFRRQQIKEFNEDPD 722

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L      + G G+NL    + ++ F   W+ ++     +     R  + G  + V V+
Sbjct: 723 FKLFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPVVVF 776

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L  + T++E +L     K  ++ L++
Sbjct: 777 RLATKGTVEESLLMSADAKRRLEKLVI 803


>gi|144369229|dbj|BAF56217.1| OsRad54 [Oryza sativa Japonica Group]
          Length = 980

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------------ 45
           +    L  E  +     +      +L N      +                         
Sbjct: 512 KNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFS 571

Query: 46  ----------KHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                       W E+  +      ++  +       I++  ++   L    +   +   
Sbjct: 572 GRSGSWTGGGGMWVELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTLDLFAQLCRERRY 631

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    +++K    + ++N+      +      + G GLNL  GGN L+ F   W+ 
Sbjct: 632 PYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNP 690

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  ++    R  + G K+ V++Y  ++  TI+E V QR  +K  +Q  ++   + +
Sbjct: 691 AN-----DKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQQEQAD 744

Query: 202 T 202
            
Sbjct: 745 G 745


>gi|156379282|ref|XP_001631387.1| predicted protein [Nematostella vectensis]
 gi|156218426|gb|EDO39324.1| predicted protein [Nematostella vectensis]
          Length = 1128

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           + +Q   G +   +      +   K     V+I       + V   F +    +      
Sbjct: 737 RLIQYDCGKLQTLDN----LLRRLKAGKHRVLIFTQMTRMLDVLEKFLNYHGYVYLRLDG 792

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +++    +  +N + +I        S G G+NL  G + +VF+   W+       ++
Sbjct: 793 STRVEQRQILMDRFNADSRIFCFILSTRSGGLGVNLT-GADTVVFYDSDWNPT-----MD 846

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y LI++ T++E +L++   K  + D+ +  
Sbjct: 847 AQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDIAIEG 894


>gi|123434210|ref|XP_001308765.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121890461|gb|EAX95835.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1454

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 45/240 (18%)

Query: 4   YHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI----- 56
           Y     +    L          N  S  ++  +  N        +    +    +     
Sbjct: 452 YQSIYTKNMDYLSRGAHKQNCSNLMSICMELRKCCNHPYLIKGAEDQILIERAALLPNKK 511

Query: 57  --------------------KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                                   ++  K +   +++       L  L+      R   +
Sbjct: 512 KKPANFENECLISSAGKMILLDKLLVKLKKDGHRVLIFSQMTKMLDILEDYLRYKRYNYE 571

Query: 97  D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                         I  +N+ K    +      + G G+NL    + +V +   W+ +  
Sbjct: 572 RIDGSVKTEDRQQAIDRFNDEKSNSFIFLLCTRAGGLGINLVS-ADTVVIYDSDWNPQN- 629

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               +     R  + G K+ V  Y  I  NT +  +      K  +   +L   K +  H
Sbjct: 630 ----DIQATARCHRIGQKKKVTAYRFITANTYERKMFDIASLKKGLDTAVLETNKGDWKH 685


>gi|290980924|ref|XP_002673181.1| predicted protein [Naegleria gruberi]
 gi|284086763|gb|EFC40437.1| predicted protein [Naegleria gruberi]
          Length = 1101

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 29/221 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y +F +    D+     E+ +  +      Q+        + +   +   E I    
Sbjct: 519 LELYREFLKS--EDVHEVIHESTSPLAAITILKQICCHPDLLPKVQKKSKNIKEMIAMSG 576

Query: 61  VIIE--------KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTI 101
            +I                ++    +  L  +                      +    +
Sbjct: 577 KMIFLRKLVQQLYEEDEKCLIFSQSSKMLDMIASMLKYINISYTRIDGTINDTKERQRRV 636

Query: 102 QEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N    P         +   GL L      ++ F   W+  +     +     R  + 
Sbjct: 637 DSFNSENSPYFCFLLTSQTGSVGLTLTA-ATRVILFDPSWNPTQ-----DNQAADRCYRI 690

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY LI+ +TI+E V ++   K  I         +
Sbjct: 691 GQLKDVVVYRLISCSTIEEKVYRKQVFKDAIFRSTTEKENQ 731


>gi|255712323|ref|XP_002552444.1| KLTH0C05038p [Lachancea thermotolerans]
 gi|238933823|emb|CAR22006.1| KLTH0C05038p [Lachancea thermotolerans]
          Length = 894

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------------VHDEKIKAL 59
             L   +I   +S +      ++ N      ++ ++ E             +   K++ L
Sbjct: 558 AQLDLSSITPSSSLALITLFKKICNSPSLISQDSYYLENIKSKSDLTGCLGLDSGKLRVL 617

Query: 60  EVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
             ++E          +++  ++   L  +Q      R             +    ++ +N
Sbjct: 618 LALLENIRSSYPQEKVVIVSNYTQTLDIIQNILTSNRFAFTRLDGNTPTKERDRIVRAFN 677

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               +        S G GLNL  G + LV F   W+       I+   ++R  + G +R 
Sbjct: 678 TVPSLFAFLLSAKSGGVGLNL-IGASRLVLFDNDWNPA-----IDLQAMSRIHRDGQRRP 731

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE + QR   K ++    +  
Sbjct: 732 CFIYRLLTTGCIDEKIFQRQLMKISLSFRFMGD 764


>gi|242017388|ref|XP_002429171.1| TATA-binding protein-associated factor, putative [Pediculus humanus
            corporis]
 gi|212514049|gb|EEB16433.1| TATA-binding protein-associated factor, putative [Pediculus humanus
            corporis]
          Length = 1746

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 77/246 (31%), Gaps = 56/246 (22%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGA--VYYDEEKHWKEV--- 51
            + Y  F R        +++        +          + N    V   +   ++++   
Sbjct: 1433 QLYEDFSRSQAHQSLQDSLSLPSHANTHIFQALRYLQNVCNHPKLVLTPQHPEYQKIMTL 1492

Query: 52   ------------HDEKIKALEVIIEKA--------------NAAPIIVAYHFNSDLARL- 84
                        H  K+ AL+ ++                 N    ++     S L  + 
Sbjct: 1493 LNQQGTSMDDIQHACKLPALKQLLLDCGIGNAAVANDVVYINQHRALIFCQLKSMLDIIE 1552

Query: 85   ------------QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
                                   +    + ++N +  I +L       G GLNL  G + 
Sbjct: 1553 SDLLKKHLPNVSYLRLDGSIPPSQRHSVVNKFNSDPSIDVLLLTTQVGGLGLNLT-GADT 1611

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F    W+      M +   + R  + G K+ V VY LI + T++E ++   + K    
Sbjct: 1612 VIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKLLTA 1666

Query: 192  DLLLNA 197
            + +++ 
Sbjct: 1667 NTIISD 1672


>gi|47210118|emb|CAF91684.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1996

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 71/267 (26%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF------------------NSASKTVKCLQLANGAVYY 42
            ++ Y  F +        E+I +                   +         +L N     
Sbjct: 1646 VQLYEDFAKSRAKASVDESISSASTGEEEEEEEKPKLKATGHVFQALQYLRKLCNHPSLV 1705

Query: 43   DEEKHWKE-----------------VHDEKIKALEVIIEKAN----------------AA 69
               +H +                   H  K+ AL+ ++                      
Sbjct: 1706 LTSQHPEYRRITEELAAQSSSLRDVQHAPKLSALKQLLLDCGLGGGGGPEGATEAVVAQH 1765

Query: 70   PIIVAYHFNSDLARLQK----AFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAH 115
             +++     S L  ++           T  +             +  +N +  I +L   
Sbjct: 1766 RVLIFCQLKSMLDIVEHDLLKPKLPSVTYLRLDGSVPAGLRHSIVSRFNNDPSIDVLLLT 1825

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL  G + +VF    W+        +   + R  + G KR V VY LI + T
Sbjct: 1826 THVGGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYRLITRGT 1879

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKET 202
            ++E ++   + K +I + +++      
Sbjct: 1880 LEEKIMGLQKFKMSIANTVISQDNASM 1906


>gi|328868264|gb|EGG16642.1| chromo domain-containing protein [Dictyostelium fasciculatum]
          Length = 2319

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 39/229 (17%)

Query: 4    YHKFQRELYCDLQGENIEAFN--SASKTV-KCLQLANGAVYYDEEKHWKEV--------- 51
            Y     +    L        N    +  + +  ++ N        +              
Sbjct: 834  YRAILEKNREFLARGVKSKSNLPKLTNIMIQIRKVCNHPFLIPGAEDTIIRQEKLTTDEQ 893

Query: 52   -------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                      K+  ++ +++  K     +++       L  L+          +      
Sbjct: 894  IAELLIRSSSKLVLVDKLLQRLKKEGHRVLIFSQMVESLNILEDYLHYREYSYERLDGSV 953

Query: 98   -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   +I+ + + +    +      S G G+NL    + ++ F   W+ +      + 
Sbjct: 954  SSVLRQASIERFMDQESDRFVFLLSTRSGGVGINLTS-ADTVILFDSDWNPQS-----DL 1007

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                R  + G    V VY LI +NT ++ + +    K  +  ++LN  K
Sbjct: 1008 QAQARCHRIGQTSNVKVYRLITRNTYEQYLFEVATKKLLLDHIVLNNAK 1056


>gi|331232855|ref|XP_003329089.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309308079|gb|EFP84670.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 2115

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 23/201 (11%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
               L  + +     A K +   Q+    G +      H  E   +               
Sbjct: 1843 ISKLGPKGLRDITHAPKLLALRQILRDCG-IGLTTSTHLIETVADDGGGTTASGGTIPQH 1901

Query: 70   PIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
             +++       L                           K    +Q +N +  I  L   
Sbjct: 1902 RVLIFCQMKQMLDIIEHDLFKLQMPNVTYMRMDGSTDATKRHDVVQTFNSDPSIDCLLLT 1961

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI + T
Sbjct: 1962 THVGGLGLNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRLGQKKVVNVYRLITRAT 2015

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            ++E ++   R K  I   ++N
Sbjct: 2016 LEEKIMGLQRFKMNIATSIVN 2036


>gi|5917755|gb|AAD56023.1|AF181826_1 chromodomain helicase DNA binding protein 1 [Gallus gallus]
          Length = 981

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 408 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 467

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 468 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 527

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 528 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 581

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 582 RAHRIGPKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 625


>gi|330846201|ref|XP_003294935.1| hypothetical protein DICPUDRAFT_85378 [Dictyostelium purpureum]
 gi|325074496|gb|EGC28539.1| hypothetical protein DICPUDRAFT_85378 [Dictyostelium purpureum]
          Length = 2294

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + +Q   G +     +    +   K      +I       + +   F +          
Sbjct: 1190 KRLVQYDCGKLQ----EMAILLRKLKNGGHRALIFTQMTRMLDIFEEFLNIHGYTYLRLD 1245

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                ++K     + +N + KI L      S G GLNL  G + ++F+   W+       +
Sbjct: 1246 GSTKIEKRQALTERFNTDPKIFLFILSTRSGGLGLNLT-GADTVIFYDTDWNPS-----M 1299

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     R  + G  R V +Y LI  ++I+E +L++   K  + ++++ A +
Sbjct: 1300 DAQAQDRCHRIGQTREVNIYRLITMHSIEENILKKSNQKRQLDNMVIKAGE 1350


>gi|189233881|ref|XP_970343.2| PREDICTED: similar to Chromodomain-helicase-DNA-binding protein
           [Tribolium castaneum]
 gi|270014822|gb|EFA11270.1| hypothetical protein TcasGA2_TC010805 [Tribolium castaneum]
          Length = 1697

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY----DEEKHWKEVH----- 52
           K Y+  ++       G         +  ++  +  N A+       E  + +E H     
Sbjct: 678 KNYNALRK-------GVKGSTNTFLNIVIELKKCCNHALLTKPTEYESNNSQEDHLQLLL 730

Query: 53  --DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
               K+  L+ ++ +       +++       L  L +         +            
Sbjct: 731 RGSGKLVLLDKLLIRLRETGHRVLIFSQMVRMLDILGEYLQLRHFPFQRLDGGIKGELRK 790

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 791 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 844

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 845 HRIGQKNQVNIYRLVTARSVEEEIVERAKQKMVLDHLVIQRM 886


>gi|149611552|ref|XP_001521337.1| PREDICTED: similar to SMARCA4, partial [Ornithorhynchus anatinus]
          Length = 708

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 242 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 301

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 302 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 361

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 362 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 417

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 418 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 466


>gi|121700232|ref|XP_001268381.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            clavatus NRRL 1]
 gi|119396523|gb|EAW06955.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1253

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 23/177 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLAR-----------LQ 85
             Y        V   KI+    I+++          I+   F S L              +
Sbjct: 1067 KYLRRLEKTWVTSAKIEKTLEILQEIGNRDDSEKTIIFSQFTSLLDLLEVPIARRGWGYR 1126

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +  D++   +   +     ++     +   GLNL    + ++ F  +W+     
Sbjct: 1127 RYDGSMKPADRNSAVLDFTDNADCKIMLVSLKAGNSGLNLVA-ASQVIIFDPFWNP---- 1181

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKK 200
              IE   + R  + G +R V ++ ++ Q T+++ +L+    K  + +  L+  ALK+
Sbjct: 1182 -YIEEQAIDRAHRIGQRREVQIHRVLVQKTVEDRILELQDKKRELIEGALDEKALKQ 1237



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 3/49 (6%), Positives = 9/49 (18%), Gaps = 6/49 (12%)

Query: 3   QYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEE 45
            Y+  + +                   N     ++  Q         + 
Sbjct: 828 LYNALESKTKLQFNKYLKANAVGRNYSNILVLLLRLRQACCHPHLMTDF 876


>gi|146174330|ref|XP_001019329.2| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|146144785|gb|EAR99084.2| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1016

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 23/216 (10%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVH 52
           +K Y         D      +  N  +  ++  ++      +         E       +
Sbjct: 299 LKMYRNILLNKTIDSVYIGDQKRNYNNTLMQLRKVCIHPYLFDGVEDRSLPEYGDHLVYN 358

Query: 53  DEKIKALEVIIEKANAAPI-----IVAYHFNSDL--ARLQKAFPQGRTLDKDPCTIQEWN 105
             K+  L+ +++K           ++   F + L  A           +++    + E+ 
Sbjct: 359 SGKMVVLDKLLKKLYQEKEKAHQVLIFTQFTTCLGKAWNYCRIDGSTEVNEREQMMNEFQ 418

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +      + G G+NL    N +V F   ++ +     I+   + R  + G  R
Sbjct: 419 RDDSDKFVFLLSTRAGGLGINLTK-ANFVVIFDSDFNPQ-----IDLQAMDRAYRIGQTR 472

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V V  LI Q T++E +++R   K  +  L++ + +
Sbjct: 473 EVKVIRLITQFTVEEKIIERQGIKLKLDQLIIQSGR 508


>gi|308799669|ref|XP_003074615.1| Chromodomain-helicase-DNA-binding protein 6 (ISS) [Ostreococcus
           tauri]
 gi|116000786|emb|CAL50466.1| Chromodomain-helicase-DNA-binding protein 6 (ISS) [Ostreococcus
           tauri]
          Length = 1390

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 33/227 (14%)

Query: 2   KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
           K Y       +  L+          N A+  ++  +        D  +            
Sbjct: 556 KCYRALFERNFSFLRQGCESKENFANFANIMMEVRKCCQHPFLLDGVEAAVAPEGASTNI 615

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--------- 96
                 K++ L+ ++          +V       L         +G +  +         
Sbjct: 616 LVSSSGKLQLLDKLLPHLREGGHRALVFSQMTRVLDVLEDYCRARGHSYVRLDGSVTGSA 675

Query: 97  DPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +   +    L      + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 676 RQEAIDHYCAEDSDTFLFLLSTRAGGQGINL-VQADTVIMFDSDWNPQN-----DAQALA 729

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R V VY L+ + + ++ +  R   K  ++  +     KE
Sbjct: 730 RAHRIGQTRQVQVYRLVMRGSYEKEMFTRASMKLGLEQAIFGGADKE 776


>gi|317159396|ref|XP_001827279.2| hypothetical protein AOR_1_1414024 [Aspergillus oryzae RIB40]
          Length = 1090

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 29/189 (15%)

Query: 31   KCLQ--LANGAVY--YDEEKHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFN 78
            +  Q  L + A    Y +      +   KI     I+               +++   F 
Sbjct: 849  RLRQRALTSPAAKQKYHQILAETWISSSKIDRALEIVRDIVARGEPGGEREKVVIFSQFT 908

Query: 79   SDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            S L              ++     +  D+   T+    +    +L     +   GLNL  
Sbjct: 909  SMLDLIEVPLARHGWAFRRYDGTMKPADRHAATVHFATDPDCLILLVSMKAGNSGLNLTA 968

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + ++    +W+       +E   V R  + G +R V V+ ++  NT+++ +L     K
Sbjct: 969  -ASQVIILDPFWNP-----YVEDQAVGRVHRIGQRRPVHVHRILVSNTVEDRILDFQDRK 1022

Query: 188  STIQDLLLN 196
              + + +++
Sbjct: 1023 RQLIEGIVD 1031



 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 2/50 (4%), Positives = 8/50 (16%), Gaps = 6/50 (12%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEE 45
           + Y   +                +    +      +  Q         + 
Sbjct: 621 ELYTALECHTRLQFNHYLSGGNPSRNVSHMLGLLQRLRQACCHPFLVSDF 670


>gi|297271008|ref|XP_002800208.1| PREDICTED: probable global transcription activator SNF2L2-like
           [Macaca mulatta]
          Length = 1173

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 578 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 637

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 638 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 697

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 698 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 753

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 754 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 802


>gi|83776027|dbj|BAE66146.1| unnamed protein product [Aspergillus oryzae]
          Length = 966

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 29/189 (15%)

Query: 31  KCLQ--LANGAVY--YDEEKHWKEVHDEKIKALEVIIEKA--------NAAPIIVAYHFN 78
           +  Q  L + A    Y +      +   KI     I+               +++   F 
Sbjct: 762 RLRQRALTSPAAKQKYHQILAETWISSSKIDRALEIVRDIVARGEPGGEREKVVIFSQFT 821

Query: 79  SDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
           S L              ++     +  D+   T+    +    +L     +   GLNL  
Sbjct: 822 SMLDLIEVPLARHGWAFRRYDGTMKPADRHAATVHFATDPDCLILLVSMKAGNSGLNLTA 881

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++    +W+       +E   V R  + G +R V V+ ++  NT+++ +L     K
Sbjct: 882 -ASQVIILDPFWNP-----YVEDQAVGRVHRIGQRRPVHVHRILVSNTVEDRILDFQDRK 935

Query: 188 STIQDLLLN 196
             + + +++
Sbjct: 936 RQLIEGIVD 944



 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 2/50 (4%), Positives = 8/50 (16%), Gaps = 6/50 (12%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEE 45
           + Y   +                +    +      +  Q         + 
Sbjct: 534 ELYTALECHTRLQFNHYLSGGNPSRNVSHMLGLLQRLRQACCHPFLVSDF 583


>gi|328769067|gb|EGF79112.1| hypothetical protein BATDEDRAFT_17244 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 988

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 41/226 (18%)

Query: 7   FQRELYCDLQGENIEAFNSAS-----------KTVKCLQLANGAVYY--------DEEKH 47
            QR  Y  L  ++I+A N A+             ++  +  N    +             
Sbjct: 367 MQRMWYKRLLEKDIDAVNGAAGRKESKTRLQNIVMQLRKCCNHPYLFDGAEPGPPYTTDQ 426

Query: 48  WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
               +  K+  L+ +++   A  + +++    +  L  L+                   +
Sbjct: 427 HLVDNSGKMALLDKLLQHLKAQGSRVLLFSQMSRVLDILEDYCIWKEFDYCRLDGTTAHE 486

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +I E+N+      +      + G G+NL    +I++ +   W+ +        +  
Sbjct: 487 DRINSIDEYNKPDSSKFIFLLTTRAGGLGINL-ATADIVIMYDNDWNPQV-------VTE 538

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G K+ V ++  I +N I+E V+ R   K  +  L++   +
Sbjct: 539 DRAHRIGQKKQVVIFRFITENAIEEKVIDRATQKLRLDQLVIQQGR 584


>gi|327309026|ref|XP_003239204.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton rubrum CBS
            118892]
 gi|326459460|gb|EGD84913.1| SWI/SNF family DNA-dependent ATPase Ris1 [Trichophyton rubrum CBS
            118892]
          Length = 1171

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 997  SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPADRND 1056

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1057 SVLDFTDNPDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1110

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1111 IGQLRPVMVHRLLIENTVEDRIIALQDKKRQIIEGALDE 1149


>gi|194389378|dbj|BAG61650.1| unnamed protein product [Homo sapiens]
          Length = 867

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 227 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 286

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 287 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 346

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 347 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 402

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 403 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 451


>gi|118343653|ref|NP_001071647.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975395|gb|AAO61783.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1806

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 38/220 (17%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--------- 54
           Y    +       G         +  ++  +  N           +  + +         
Sbjct: 735 YKALSK-------GSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRS 787

Query: 55  ----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
                +    +I  +     +++       L  L +     +   +              
Sbjct: 788 SGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQA 847

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N              + G G+NL    + +V F   W+ +      +     R  +
Sbjct: 848 LDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARAHR 901

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 902 IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 941


>gi|73952006|ref|XP_546008.2| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           isoform 1 [Canis familiaris]
          Length = 1799

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 722 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 781

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 782 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 841

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 842 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 895

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 896 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 939


>gi|299751215|ref|XP_001830131.2| Fun30p [Coprinopsis cinerea okayama7#130]
 gi|298409272|gb|EAU91796.2| Fun30p [Coprinopsis cinerea okayama7#130]
          Length = 1123

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 47   HWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                ++  K+  L  +I   +     +++   F   L  LQ                  +
Sbjct: 926  DDVYLNAGKVTTLLKLIEGYRKEDRKMLIFSQFTQILDILQVILKNKGIKFLVLTGSTPV 985

Query: 95   DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D     + E+  +  IP+      + G G+NL    +++V F   ++        ++   
Sbjct: 986  DVRQSLVDEFTEDEDIPIFLLSTKAGGMGINLTA-ASVVVMFDQDFNP-----HNDKQAQ 1039

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  + G KR V V  LI++ TI+E +L+   TK  + + +    + +
Sbjct: 1040 DRAYRIGQKRDVDVVKLISRGTIEEDMLKLGETKLALDEAVAGDTEGK 1087


>gi|242023503|ref|XP_002432172.1| Homeotic gene regulator, putative [Pediculus humanus corporis]
 gi|212517560|gb|EEB19434.1| Homeotic gene regulator, putative [Pediculus humanus corporis]
          Length = 1504

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    + + +     H    
Sbjct: 925  LYRHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQQIEEKYCDHVGAA 984

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                          K + L+ I+ K       +++       +  ++             
Sbjct: 985  AGVISGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLTWRNFNYLRL 1044

Query: 96   -------KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        ++++N  + +  L      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1045 DGTTKSEDRGELLRKFNSKDSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1100

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1101 --DLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1149


>gi|41055574|ref|NP_957438.1| DNA repair and recombination protein RAD54-like [Danio rerio]
 gi|28277973|gb|AAH46050.1| RAD54-like (S. cerevisiae) [Danio rerio]
          Length = 738

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 33  LQLANGAVYYDEE---------------------KHWKEVHDEKIKALEVIIEKA---NA 68
            +L N      E+                     K  +     K+  L+ I+       +
Sbjct: 448 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 507

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHP 116
             +++  ++   L   +K                ++ K    ++ +N    P  +     
Sbjct: 508 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 567

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL  G N LV F   W+        +   + R  + G K+  ++Y L++  TI
Sbjct: 568 KAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRDGQKKTCYIYRLLSTGTI 621

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +LQR   K  +   +++ 
Sbjct: 622 EEKILQRQAHKKALSSCVVDE 642


>gi|206599758|ref|YP_002241947.1| gp54 [Mycobacterium phage Gumball]
 gi|206282972|gb|ACI06426.1| gp52 [Mycobacterium phage Gumball]
          Length = 647

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 33/228 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEK 55
           +K Y    ++    L+   + A    ++  +  Q+A            E+     +   K
Sbjct: 412 LKAYQAMVKDAAVKLESGVLSANGVLAEMTRLKQMACSYGDLAIAPTGEQTFRPSLPSNK 471

Query: 56  IKALEVIIEKA--------NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
              L  ++               +IVA  F   L                     +  + 
Sbjct: 472 FDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYAELNKLGIKCHLLTGATSEKER 531

Query: 98  PCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R  
Sbjct: 532 VRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDRAH 590

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +        V ++ L +  +I+E +      +      +++  + 
Sbjct: 591 RISRT----DHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGARG 634


>gi|71425488|ref|XP_813116.1| helicase [Trypanosoma cruzi strain CL Brener]
 gi|70877970|gb|EAN91265.1| helicase, putative [Trypanosoma cruzi]
          Length = 1191

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 65  KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +     +++   F   L                       ++    +  +N + +I  + 
Sbjct: 826 RREGHRMLIFTQFVHMLNILERFLAIIGIPYLRIDGSTQAERRQAFVDRFNEDDRITCMI 885

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               S G GLNL  G + ++F+   W+       ++     R  + G  + V +Y LI++
Sbjct: 886 LSTRSGGIGLNLT-GADTVIFYDSDWNPT-----MDLQAQDRCHRIGQTKPVTIYRLISE 939

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
           +T++E +LQ+ R +  + ++++
Sbjct: 940 HTVEENILQKARERKKLNNVVI 961


>gi|190345830|gb|EDK37782.2| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 952

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPCT 100
             K+  L+ ++         V  +F                  +                
Sbjct: 734 SGKLARLDQLLVDLKGDDHRVLIYFQMTKMMDLMEEYLTYRQHRYIRLDGSSKLEDRRDL 793

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W  + +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 794 VHDWQTKPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 847

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKE 201
           G  + V VY L+A+ TI+E +  R + K  +Q +++   A KKE
Sbjct: 848 GQTKQVTVYRLLARGTIEERMRNRAKQKEQVQQVVMEGKASKKE 891


>gi|73997414|ref|XP_867801.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 9 [Canis familiaris]
          Length = 1899

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 33/221 (14%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 972  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1031

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1032 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1091

Query: 96   KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +N  +          + G G+NL    + ++ +   W+        +    +
Sbjct: 1092 MRQEAIDRFNGREPDFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFS 1145

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1146 RAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1186


>gi|296080908|emb|CBI18752.3| unnamed protein product [Vitis vinifera]
          Length = 1187

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 23/175 (13%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQGRTLD 95
            +D     +     KI+A   +++  +          IV   +   L  L+          
Sbjct: 1000 HDPCPESRLYDSSKIRAALEVLQSLSKPRDLVGEKAIVFSQWTRMLDLLESCLKNSSIQY 1059

Query: 96   KD----------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            +              ++++N   ++ ++     +   GLN+    + ++   LWW+    
Sbjct: 1060 RRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH-VLLLDLWWNPTT- 1117

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                E   + R  + G  R V V  L  ++T+++ +L   + K  +        +
Sbjct: 1118 ----EDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKREMVASAFGEDE 1168


>gi|1597721|emb|CAA67494.1| putative helicase [Schizosaccharomyces pombe]
          Length = 1367

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 81/226 (35%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYD---------------E 44
           + Y     + Y  L G        +  +  V+  +++N    +                +
Sbjct: 629 EWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTRED 688

Query: 45  EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                 ++  K+  L+ +++  K +   +++       L  L +         +      
Sbjct: 689 TLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTI 748

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  +I  +N    P  +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 749 PASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINL-NTADTVIIFDSDWNPQA-----DL 802

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 803 QAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIIS 848


>gi|45201219|ref|NP_986789.1| AGR123Cp [Ashbya gossypii ATCC 10895]
 gi|44986073|gb|AAS54613.1| AGR123Cp [Ashbya gossypii ATCC 10895]
          Length = 1422

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 38/222 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------------- 50
             +       G     F+  +   +  + +N    +   ++                   
Sbjct: 610 LTKNYNALTAGTKGTHFSLLNIMNELKKASNHPYLFGNAENRVLAKFGDGNRSRENILRG 669

Query: 51  --VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
             +   K+  L+ ++   K +   +++       L  L                     +
Sbjct: 670 LIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSSQ 729

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +I  +N       +      + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 730 RRISIDHFNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMA 783

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 784 RAHRIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 825


>gi|301105731|ref|XP_002901949.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262099287|gb|EEY57339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 744

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 74/224 (33%), Gaps = 38/224 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEK 55
              + +       +        +K ++  +       +DE                   K
Sbjct: 433 KAMEEKYGKFQAQKAFNTTTLRNKMMQLRKCCLHPYLFDEPLTAGGDVVTDERMIETSGK 492

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           +  L+ ++ +       +++       +  L+  F               L      +++
Sbjct: 493 LSILDRMLRQLKRKGHKVLIFSQMTRMMDILEDYFRMREYSYCRLDGSTKLMDRVDQMEK 552

Query: 104 WN-----------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +N           +  + +      + G G+NL    + ++F+   W+ ++     +   
Sbjct: 553 FNKVSAGSGSANDDDNVFVFMLSTRAGGLGINL-IAADTVIFYDSDWNPQQ-----DNQA 606

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + R  + G K  + VY L+ +N+ ++ + QR   K  ++ +++ 
Sbjct: 607 MDRCHRIGQKNEIIVYRLVTENSFEDRMTQRAFEKRKLERVVIQ 650


>gi|302499754|ref|XP_003011872.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
 gi|291175426|gb|EFE31232.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 533 NSESALQLITILKKVCNSPSLLKPKVEDNGKGEDTSMSALLSSLPPNIHRCLAAGSSGKI 592

Query: 57  KALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++          +++  ++ S L  L                     K    +++
Sbjct: 593 RVLDQLLYNLQSKTKEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPATKRQALVED 652

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 653 FNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 706

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 707 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|261200100|ref|XP_002626451.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            SLH14081]
 gi|239594659|gb|EEQ77240.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            SLH14081]
          Length = 1150

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + ++E    L    + +            + +     D++     +  +    L  +++ 
Sbjct: 952  EAKKEYIRYLNDNWVTSAKIEKTMETLRSIQSRIPEGDDQPEKTIIFSQ-FTTLLDLLQV 1010

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLN 124
                       +                  +    + E+++ K   ++     +   GLN
Sbjct: 1011 PIEREGWGYCRY-----------DGSMQPSERNEAVLEFSDSKDRTIMLISLKAGNSGLN 1059

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++    +W+       IE   + R  + G  R V V+ +  + T+++ +L+  
Sbjct: 1060 LT-VASQVIILDPFWNP-----YIEEQAIDRAHRIGQLRPVMVHRIFVKGTVEDRILELQ 1113

Query: 185  RTKSTIQDLLLNALKKETI 203
              K  + +  L+    +TI
Sbjct: 1114 DRKRALVEGALDEKASQTI 1132



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L+   I     N     ++  Q        D+          KI
Sbjct: 748 LYDALESKTQVRFNKYLREGTIGRNYSNILVLLLRLRQTCCHPHLIDDLSVETIAEAAKI 807

Query: 57  KALEV 61
             +E 
Sbjct: 808 DLIEN 812


>gi|224015246|ref|XP_002297281.1| helicase-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220968075|gb|EED86431.1| helicase-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCT 100
             K   L  ++ +       I++   +   L  +                   +++    
Sbjct: 394 SPKFVRLRTLLPELVGKGHRILLFSQWTRVLDLMHNLLESLDMKFMRLDGSTAVNERQEM 453

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +  +  IP+      + G GLNL    ++ +   L ++        +R    R  + 
Sbjct: 454 IDTFTEDSSIPIFLLSTRAGGMGLNLTA-ADVCILHDLDFNP-----FNDRQAEDRCHRI 507

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K+ V +  ++ + T+DE +      K  + + +++ 
Sbjct: 508 GQKKPVTILKMVTRGTVDEAIYSLQERKERMNEAIMDE 545


>gi|156089179|ref|XP_001611996.1| DNA repair protein rhp16 [Babesia bovis T2Bo]
 gi|154799250|gb|EDO08428.1| DNA repair protein rhp16, putative [Babesia bovis]
          Length = 1289

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 21/146 (14%)

Query: 70   PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              IV   + S L  +                  +   +    ++      + ++     +
Sbjct: 1138 KSIVFSQYCSMLDLIAYRLKTANIECAVLVGNTKIESRRNILLEFNKNPSLRVMLISLNA 1197

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNLQ   N +     WW+            + R  + G  + V+    I ++TI+E
Sbjct: 1198 GGEGLNLQ-IANRIFLMDPWWNPAAEL-----QAIQRAHRIGQTKPVYAIRFICKDTIEE 1251

Query: 179  LVLQRLRTKSTIQDLLL----NALKK 200
             ++     K  + D  +     ++KK
Sbjct: 1252 RIIALQEKKMILFDATICSSGESMKK 1277


>gi|317030844|ref|XP_001392337.2| chromodomain helicase (Chd1) [Aspergillus niger CBS 513.88]
          Length = 1516

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 691 LEYYKNILTKNYAALNDGARGQKQSLLNIMMELKKASNHPFMFPNAEARILEGSTRREDV 750

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L      +G T  +      
Sbjct: 751 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEFRGYTYQRLDGTIP 810

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 811 AAARRLAIEHYNAPGSNDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 864

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 865 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 903


>gi|109522620|ref|YP_655432.1| gp53 [Mycobacterium phage PLot]
 gi|88910727|gb|ABD58652.1| gp53 [Mycobacterium phage PLot]
          Length = 647

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 33/228 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEK 55
           +K Y    ++    L+   + A    ++  +  Q+A            E+     +   K
Sbjct: 412 LKAYQAMVKDAAVKLESGVLSANGVLAEMTRLKQMACSYGDLAIAPTGEQTFRPSLPSNK 471

Query: 56  IKALEVIIEKA--------NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
              L  ++               +IVA  F   L                     +  + 
Sbjct: 472 FDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYAELNKLGIKCHLLTGAISEKER 531

Query: 98  PCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R  
Sbjct: 532 VRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDRAH 590

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +        V ++ L +  +I+E +      +      +++  + 
Sbjct: 591 RISRT----DHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGARG 634


>gi|242772478|ref|XP_002478043.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218721662|gb|EED21080.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1146

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 21/173 (12%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLAR-----------L 84
              Y +      +   KI+    I+E+     +    I+   F S L              
Sbjct: 959  RKYFKRLEKNWMTSAKIEKAIEILEEIKDSGSGEKTIIFSQFTSLLDLLEVPINRRGWKY 1018

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            ++        D++   ++  +  +  ++     +   GLNL    + ++ F  +W+    
Sbjct: 1019 RRYDGSMNPRDRNESVLEFTDNPECDIMLVSLKAGNAGLNLVA-ASQVIIFDPFWNP--- 1074

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               IE   + R  + G  R V V+ ++ + T+++ +L     K  + +  L+ 
Sbjct: 1075 --YIEEQAIDRAHRLGQTRPVQVHRVLVEKTVEDRILALQEEKREVIEGALDE 1125



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 4/49 (8%), Positives = 12/49 (24%), Gaps = 6/49 (12%)

Query: 2   KQYHKFQRELYCD----LQGENI--EAFNSASKTVKCLQLANGAVYYDE 44
           + Y+  +          L    +     N     ++  Q        ++
Sbjct: 695 QLYNSLESRTQIQFNKYLDAGTVGRNYSNILVLLLRLRQACCHPHLIND 743


>gi|154296983|ref|XP_001548920.1| hypothetical protein BC1G_12580 [Botryotinia fuckeliana B05.10]
 gi|150843107|gb|EDN18300.1| hypothetical protein BC1G_12580 [Botryotinia fuckeliana B05.10]
          Length = 817

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 67/207 (32%), Gaps = 29/207 (14%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYD---------EEKHWKEVHDEKIKALEVI 62
             +L  + I +    +  ++   + N  + +                     K+  L+ +
Sbjct: 528 ILELARKEISSKKLGNPVMQMRLVCNSPLNFYNPWSADSGIPFNETLVSSSGKMLLLDRL 587

Query: 63  IEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT--LDKDPCTIQEWNEGK 108
           +         +++   F            +L   +     G      +     +   + +
Sbjct: 588 LPSLFSRGHKVLIFSQFKTQLDILEDYARELRNWKVCRIDGSVAQDFRRQQIKEFNEDPE 647

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L      + G G+NL    + ++ F   W+ ++     +     R  + G  + V V+
Sbjct: 648 FKLFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTKPVVVF 701

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L  + T++E +L     K  ++ L++
Sbjct: 702 RLATKGTVEEDLLMSADAKRRLEKLVI 728


>gi|47575794|ref|NP_001001241.1| RAD54-like [Xenopus (Silurana) tropicalis]
 gi|45708870|gb|AAH67986.1| RAD54-like (S. cerevisiae) [Xenopus (Silurana) tropicalis]
          Length = 742

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 81/233 (34%), Gaps = 43/233 (18%)

Query: 2   KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y  F ++    +   E   + +S S      +L N      E+   +E          
Sbjct: 420 ELYKLFLKQAKPAEDLNEGKISVSSLSSITSLKKLCNHPSLIYEKCVEEEEGFQGALNLF 479

Query: 53  -------------DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                          K+  L+ I+      ++  +++  ++   L   +K          
Sbjct: 480 PSGYSTKSVEPQLSGKMLVLDYILAVTRSTSSDKVVLVSNYTQTLDLFEKLCRTRRYLYV 539

Query: 91  ----GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 ++ K    ++ +N    P  +      + G GLNL  G N LV F   W+    
Sbjct: 540 RLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN- 597

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G K+  F+Y L++  TI+E + QR   K  +   +++ 
Sbjct: 598 ----DEQAMARVWRDGQKKTCFIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE 646


>gi|322703872|gb|EFY95474.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
            anisopliae ARSEF 23]
          Length = 1074

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 67/189 (35%), Gaps = 23/189 (12%)

Query: 28   KTVKCLQLANGAVY--YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            K+++     N   Y  Y        +   K+     ++ +        I+   +   L  
Sbjct: 873  KSLRLEAAKNHQAYKRYMAYLRKTWMPAAKVTECMKLLREIRETGEKTIIFSQWTLLLDL 932

Query: 84   LQKAFPQ------------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130
            L+ A                 T D+     +++ +  +  ++     +   GLNL    +
Sbjct: 933  LEVAMWHEQFPDKPVRYDGSMTGDERSNAAKDFRDRSECNVMLVSLRAGNAGLNLTA-AS 991

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++    +W+       IE   + R  + G ++ V VY ++ Q T+++ ++     K  I
Sbjct: 992  RVIIMDPFWNP-----YIEMQAIDRTYRIGQQKEVEVYRILTQETVEDRIVALQNKKKEI 1046

Query: 191  QDLLLNALK 199
             +  L+  +
Sbjct: 1047 VEAALDETE 1055



 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 4/57 (7%), Positives = 13/57 (22%), Gaps = 6/57 (10%)

Query: 4   YHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y + + +        L+  ++     N     ++  Q         +          
Sbjct: 618 YKQLEEKAQVVFSKYLREGSVGKNYSNILVLLLRLRQACCHPHLNLDVDDAVNPVSS 674


>gi|225680579|gb|EEH18863.1| helicase swr1 [Paracoccidioides brasiliensis Pb03]
          Length = 1679

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1338 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1381

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1382 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1440

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1441 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1495

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1496 MLDDVIIQEGE 1506


>gi|255725912|ref|XP_002547882.1| hypothetical protein CTRG_02179 [Candida tropicalis MYA-3404]
 gi|240133806|gb|EER33361.1| hypothetical protein CTRG_02179 [Candida tropicalis MYA-3404]
          Length = 818

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 31/193 (16%)

Query: 28  KTVKCLQLANGAVYYDEE------------KHWKEVHDEKIKALEVIIEK--ANAAPIIV 73
           K ++   + N    Y E                 + +  K + L+ ++ K   N   +++
Sbjct: 549 KVIQLRNICNSPYMYYEPFADDSDESTDKFMEVLKKNSCKFQMLDQLLSKLLPNGHKLLI 608

Query: 74  AYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              F   +  L+  F                  +        N+ +  +      + G G
Sbjct: 609 FCQFTKVMELLESYFDYFEIKTCYLDGTVSHDIRQEQIDDFNNDPESKIFLLSTRAGGLG 668

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + ++ +   W+ +     ++   + R  + G  + V +Y  + +++I+E++L 
Sbjct: 669 LNLTA-ADTVILWDSDWNPQ-----VDLQAIDRVHRIGQTKPVKIYRFMVKDSIEEILLS 722

Query: 183 RLRTKSTIQDLLL 195
           R  +K  ++ L++
Sbjct: 723 RSGSKRMLEKLVM 735


>gi|109522826|ref|YP_655246.1| gp50 [Mycobacterium phage PBI1]
 gi|189043204|ref|YP_001936143.1| gp52 [Mycobacterium phage Adjutor]
 gi|206599671|ref|YP_002241550.1| gp52 [Mycobacterium phage Butterscotch]
 gi|206599847|ref|YP_002241467.1| gp53 [Mycobacterium phage Troll4]
 gi|88910539|gb|ABD58466.1| gp50 [Mycobacterium phage PBI1]
 gi|188090855|gb|ACD49637.1| gp52 [Mycobacterium phage Adjutor]
 gi|206282853|gb|ACI06340.1| gp52 [Mycobacterium phage Butterscotch]
 gi|206283089|gb|ACI06514.1| gp53 [Mycobacterium phage Troll4]
          Length = 647

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 33/228 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEK 55
           +K Y    ++    L+   + A    ++  +  Q+A            E+     +   K
Sbjct: 412 LKAYQAMVKDAAVKLESGILSANGVLAEMTRLKQMACSYGDLAIAPTGEQTFRPSLPSNK 471

Query: 56  IKALEVIIEKA--------NAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKD 97
              L  ++               +IVA  F   L                     +  + 
Sbjct: 472 FDYLVDLLSDRGIGSGEFDPTGKVIVASQFTKLLNLFYTELNKLGIRCHLLTGATSEKER 531

Query: 98  PCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +   KI      +   +  + G  + L    + +V     W+ ++ +Q+ +R  
Sbjct: 532 VRMADAFQNTKIGDDTPHVFLLNTIAGGASITL-DAADDVVTLDETWNKDDQEQVEDRAH 590

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +        V ++ L +  +I+E +      +      +++  + 
Sbjct: 591 RISRT----DHTVTIHNLRSLGSIEERIATSAFAQERNIKSIIDGARG 634


>gi|115534248|ref|NP_499654.3| yeast Swi2/Snf2-Like family member (ssl-1) [Caenorhabditis elegans]
 gi|122064843|sp|Q9NEL2|SSL1_CAEEL RecName: Full=Helicase ssl-1; AltName: Full=Swi/snf2-like protein 1
 gi|45451721|gb|AAS65429.1| Swi/Snf family ATPase [Caenorhabditis elegans]
 gi|95101929|emb|CAC35851.3| C. elegans protein Y111B2A.22a, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 2395

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1223 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFY 1281

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1282 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAI 1336

Query: 196  NA 197
            + 
Sbjct: 1337 DE 1338


>gi|239608047|gb|EEQ85034.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            ER-3]
          Length = 1150

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + ++E    L    + +            + +     D++     +  +    L  +++ 
Sbjct: 952  EAKKEYIRYLNDNWVTSAKIEKTMETLRSIQSRIPEGDDQPEKTIIFSQ-FTTLLDLLQV 1010

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLN 124
                       +                  +    + E+++ K   ++     +   GLN
Sbjct: 1011 PIEREGWGYCRY-----------DGSMQPSERNEAVLEFSDSKDRTIMLISLKAGNSGLN 1059

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++    +W+       IE   + R  + G  R V V+ +  + T+++ +L+  
Sbjct: 1060 LT-VASQVIILDPFWNP-----YIEEQAIDRAHRIGQLRPVMVHRIFVKGTVEDRILELQ 1113

Query: 185  RTKSTIQDLLLNALKKETI 203
              K  + +  L+    +TI
Sbjct: 1114 DRKRALVEGALDEKASQTI 1132



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L+   I     N     ++  Q        D+          KI
Sbjct: 748 LYDALESKTQVRFNKYLREGTIGRNYSNILVLLLRLRQTCCHPHLIDDLSVETIAEAAKI 807

Query: 57  KALEV 61
             +E 
Sbjct: 808 DLIEN 812


>gi|239611425|gb|EEQ88412.1| helicase swr1 [Ajellomyces dermatitidis ER-3]
          Length = 1684

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1339 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1382

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1383 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1441

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1442 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1496

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1497 MLDDVIIQEGE 1507


>gi|327348564|gb|EGE77421.1| helicase swr1 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1684

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1339 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1382

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1383 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1441

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1442 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1496

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1497 MLDDVIIQEGE 1507


>gi|261205240|ref|XP_002627357.1| helicase swr1 [Ajellomyces dermatitidis SLH14081]
 gi|239592416|gb|EEQ74997.1| helicase swr1 [Ajellomyces dermatitidis SLH14081]
          Length = 1684

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1339 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1382

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1383 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1441

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1442 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1496

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1497 MLDDVIIQEGE 1507


>gi|190345483|gb|EDK37379.2| hypothetical protein PGUG_01477 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1895

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                +                  ++++N +  I +L       G GLNL  G + ++F  
Sbjct: 1700 KHLPSVTYMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLT-GADTVIFVE 1758

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G K+ V VY LI ++T++E ++   + K  I   ++N
Sbjct: 1759 HDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKHTLEEKIMGLQKFKMNIASTVVN 1813


>gi|154421756|ref|XP_001583891.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121918135|gb|EAY22905.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1924

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 50/219 (22%)

Query: 30   VKCLQLANGAVYYDEEKHWKEV-------------------------HDEKI--KALEVI 62
            ++  ++ N     +  +    +                            K+      + 
Sbjct: 790  MELRKVCNHPYLLNGAEEQILIERRDMSKIPANEPLPDGFVEESLIRSSGKMILLDKLLA 849

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG--KIP 110
              K +   +++       L  LQ          +              I  +N+    I 
Sbjct: 850  KLKNDGHRVLIFSQMTRMLDILQDYLYNRGYEYERIDGTIRGDERQKAIDRYNKPNSPIF 909

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL    + ++ +   W+ +      +     R  + G  + V VY  
Sbjct: 910  VFLLCTHAGGLGINLTS-ADTVIIYDSDWNPQN-----DIQATARCHRIGQTKEVKVYRF 963

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA-----LKKETIH 204
            I  N+ +  +  R   K  +   +L       +K E I 
Sbjct: 964  ITANSYERKMFDRASYKLGLDHAVLEGTGKQQMKTEDIE 1002


>gi|295658318|ref|XP_002789720.1| helicase swr1 [Paracoccidioides brasiliensis Pb01]
 gi|226283023|gb|EEH38589.1| helicase swr1 [Paracoccidioides brasiliensis Pb01]
          Length = 1678

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1337 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1380

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1381 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1439

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1440 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1494

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1495 MLDDVIIQEGE 1505


>gi|255940126|ref|XP_002560832.1| Pc16g04810 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585455|emb|CAP93151.1| Pc16g04810 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1488

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L         +  +  ++  + +N    +   +             
Sbjct: 674 LEYYKNILTKNYAALNDGNKGMKQSLLNIMMELKKASNHPFMFPNAEAKILEGSARREDI 733

Query: 51  -----VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR-LQKAFPQGRTLDK------ 96
                    K+  L+ ++ K +     +++       L    +    +G    +      
Sbjct: 734 LRAMITSSGKMMLLDQLLRKLSVDGHRVLIFCQMVGMLNILSEYMEYRGYKYQRLDGTIP 793

Query: 97  ---DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 794 SAARRLAIEHYNAPGSTDFAFLLSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 847

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++TI+E V++R R K  +
Sbjct: 848 AMARAHRIGQTRPVSVYRLVSKDTIEEEVIERARNKLLL 886


>gi|164427331|ref|XP_963868.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
 gi|157071698|gb|EAA34632.2| hypothetical protein NCU03060 [Neurospora crassa OR74A]
          Length = 1664

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y       Y  L    N    +  +  ++  +++N    +   +                
Sbjct: 720 YKNILTRNYAALSDASNGHKQSLLNIMMELKKVSNHPYMFQGAEERVLNGSTRREDQIKG 779

Query: 51  --VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 780 LITSSGKMMLLDQLLAKLRKDGHRVLIFSQMVKMLDILGDYLRVRGYQFQRLDGTIPAGP 839

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ +   W+ +      +   + 
Sbjct: 840 RRMAINHFNAEGSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DLQAMA 893

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 894 RAHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 936


>gi|56384753|gb|AAQ24521.2| Rad26 [Giardia intestinalis]
          Length = 925

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 27/200 (13%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIKALEVII---EKANAAP 70
           GE I      +K V+   + +          +         K+  L   +      +   
Sbjct: 497 GEGITKLT-MAKLVQLQHICDHPGLLSTAPFDDSELYESSCKLTYLMEQLTTLWSQSQDK 555

Query: 71  IIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
           I+V       L  ++K                    +D  P  I ++  + +I L     
Sbjct: 556 ILVFCQGRMMLNIVEKALLETASFKNAYLRMDGNIPVDARPALISKFSTDPQIRLFLLTT 615

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GLNL    N +   +  W+       I+   V R  +    + V VY +    TI
Sbjct: 616 RVGGLGLNLTA-ANHVFLLNPNWNPT-----IDDQSVERCWRITQTKKVIVYKVFTGGTI 669

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +  R   K  +   +L+
Sbjct: 670 EEKIFNRQIYKRLLVSRVLD 689


>gi|71020293|ref|XP_760377.1| hypothetical protein UM04230.1 [Ustilago maydis 521]
 gi|46100046|gb|EAK85279.1| hypothetical protein UM04230.1 [Ustilago maydis 521]
          Length = 2115

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 80/268 (29%), Gaps = 79/268 (29%)

Query: 2    KQYHKFQRE-----------LYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHW 48
            + Y  F ++               L G+    E  +         +L N       + + 
Sbjct: 1780 QLYDDFSKDQNEDEAEAFASSEASLAGKEPNSEKQHVFKALQYMRKLVNHPSLVLTDDNP 1839

Query: 49   KEV-----------------HDEKIKALEVIIEKA------------------------- 66
            K V                 H  K++AL  ++                            
Sbjct: 1840 KHVAIKHKLNKSGGSLNDISHSPKLQALRQLLLDCGIGASGAAAAAGSGGVSDLNGDIGG 1899

Query: 67   ----NAAPIIVAYHFNSDLARL-------------QKAFPQGRTLDKDPCTIQEWN-EGK 108
                +   +++       +  +                     + +K    +Q +N +  
Sbjct: 1900 ESAVSQHRVLIFCQLKQMIDIIQRDLFAALMPSVSYMRLDGSVSAEKRHSIVQTFNADPS 1959

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +L       G GL L  G + ++F    W+      M +   + R  + G K+ V VY
Sbjct: 1960 IDVLLLTTQVGGLGLTLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRLGQKKVVNVY 2013

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             LI +NT++  ++   R K  + + ++N
Sbjct: 2014 RLITRNTLEAKIMGLQRFKLNVANSVVN 2041


>gi|315053759|ref|XP_003176254.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
 gi|311338100|gb|EFQ97302.1| ATP-dependent helicase RIS1 [Arthroderma gypseum CBS 118893]
          Length = 1178

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
              K+     I++    +     I+   F S L  ++    +     +             
Sbjct: 1005 SAKVDKTIEILQSLRDSGDEKTIIFSQFTSLLDLIEVPINRRGWNYRRYDGSMKPGDRNA 1064

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +     ++     +   GLNL    + ++    +W+       IE   + R  +
Sbjct: 1065 SVLDFTDNSDCRIMLVSLKAGNSGLNLVA-ASQVIILDPFWNP-----YIEDQAIDRAHR 1118

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G  R V V+ L+ +NT+++ ++     K  I +  L+ 
Sbjct: 1119 IGQLRPVMVHRLLVENTVEDRIVALQDKKRQIIEGALDE 1157


>gi|255077387|ref|XP_002502335.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517600|gb|ACO63593.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 712

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 63/222 (28%), Gaps = 38/222 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSAS---------KTVKCLQLANGA---------VYYDEEK 46
                +   D+  + I   +              ++  +  N                  
Sbjct: 400 DALVNKTIADVLKK-ISGDSGLVPAGSTALNNMLMQLRKNCNHPDLISGGLDGSIMFPSA 458

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                   K + L+ ++ K        ++       L           +           
Sbjct: 459 DELVEQCGKFRLLDRLLTKLRDKGHKTLIFSQMTKMLDLIESYLEQKGQKVCRIDGSVQW 518

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    + E+N   +  +      + G G+NL    + ++ +   W+  +         +
Sbjct: 519 QERKKQMDEFNTNPEYGVFLLSTRAGGLGINLTA-ADTVIIYDSDWNPHQDM-----QAM 572

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  + V V  L   ++++  +L R  +K  ++ L++
Sbjct: 573 DRCHRIGQTKPVHVLRLATAHSVEGKMLSRANSKLALEKLVI 614


>gi|159112449|ref|XP_001706453.1| DNA repair and recombination protein Rhp26p [Giardia lamblia ATCC
           50803]
 gi|157434550|gb|EDO78779.1| DNA repair and recombination protein Rhp26p [Giardia lamblia ATCC
           50803]
          Length = 930

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 27/200 (13%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIKALEVII---EKANAAP 70
           GE I      +K V+   + +          +         K+  L   +      +   
Sbjct: 502 GEGITKLT-MAKLVQLQHICDHPGLLSTAPFDDSELYESSCKLTYLMEQLTTLWSQSQDK 560

Query: 71  IIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHP 116
           I+V       L  ++K                    +D  P  I ++  + +I L     
Sbjct: 561 ILVFCQGRMMLNIVEKALLETASFKNAYLRMDGNIPVDARPALISKFSTDPQIRLFLLTT 620

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
              G GLNL    N +   +  W+       I+   V R  +    + V VY +    TI
Sbjct: 621 RVGGLGLNLTA-ANHVFLLNPNWNPT-----IDDQSVERCWRITQTKKVIVYKVFTGGTI 674

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +  R   K  +   +L+
Sbjct: 675 EEKIFNRQIYKRLLVSRVLD 694


>gi|146420507|ref|XP_001486209.1| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 952

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPCT 100
             K+  L+ ++         V  +F                  +                
Sbjct: 734 SGKLARLDQLLVDLKGDDHRVLIYFQMTKMMDLMEEYLTYRQHRYIRLDGSSKLEDRRDL 793

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +W  + +I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 794 VHDWQTKPEIFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 847

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKE 201
           G  + V VY L+A+ TI+E +  R + K  +Q +++   A KKE
Sbjct: 848 GQTKQVTVYRLLARGTIEERMRNRAKQKEQVQQVVMEGKASKKE 891


>gi|119592219|gb|EAW71813.1| FLJ20105 protein, isoform CRA_a [Homo sapiens]
          Length = 1127

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 256 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 313

Query: 42  -----------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K+  L  ++++        +V       L  +++  
Sbjct: 314 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 373

Query: 89  PQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           L +    I          +        G GL L      +V F 
Sbjct: 374 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFD 432

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K  V VY LI   T++E + +R   K ++      
Sbjct: 433 PSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 487

Query: 197 ALK 199
             K
Sbjct: 488 EKK 490


>gi|50549907|ref|XP_502425.1| YALI0D04961p [Yarrowia lipolytica]
 gi|74689630|sp|Q6CA87|SWR1_YARLI RecName: Full=Helicase SWR1
 gi|49648293|emb|CAG80613.1| YALI0D04961p [Yarrowia lipolytica]
          Length = 1772

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 11/179 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +          +          +I       + V   F +  
Sbjct: 1453 KLSIAFPDKRLLQYDCGKLQRLATLLQDLIAGGH----RALIFTQMTKVLDVLEQFLNIH 1508

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++     + +N + KIP+      S G G+NL  G + ++F+   W+
Sbjct: 1509 GLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWN 1567

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++   +
Sbjct: 1568 PS-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVIQDGE 1621


>gi|22760345|dbj|BAC11160.1| unnamed protein product [Homo sapiens]
          Length = 1106

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 235 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 292

Query: 42  -----------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K+  L  ++++        +V       L  +++  
Sbjct: 293 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 352

Query: 89  PQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           L +    I          +        G GL L      +V F 
Sbjct: 353 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFD 411

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K  V VY LI   T++E + +R   K ++      
Sbjct: 412 PSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 466

Query: 197 ALK 199
             K
Sbjct: 467 EKK 469


>gi|310791010|gb|EFQ26543.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1037

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            K  K LQL      Y +      V   K   +  I+ +                      
Sbjct: 860  KVTKLLQLI---HQYRDNGDRVLVFS-KFAKVIEILREV-----------LHTDGIKHCV 904

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++ +    I ++N +  I        + G G+NL    N ++ F    + ++   
Sbjct: 905  LYGQTSVGERQDLIDDFNKDIDITAFLLTTGAGGTGINLTS-ANKIIIFDQSDNPQD--- 960

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +     R  + G  R V V  L+  +TI+EL+ +  + K  + + +  A++
Sbjct: 961  --DIQAENRAHRLGQTRDVEVIRLLTAHTIEELIYKACQKKIELAEKVTGAVE 1011


>gi|302309194|ref|NP_986455.2| AGL212Wp [Ashbya gossypii ATCC 10895]
 gi|299788244|gb|AAS54279.2| AGL212Wp [Ashbya gossypii ATCC 10895]
          Length = 903

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 35/207 (16%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------------HDEKIKALEVIIEK 65
           +   +S        ++ N       + +++                   K+K L  ++ +
Sbjct: 568 MSFNSSLGLITLFKKICNSPSLVSSDSYFQSKVNGGTPALRIAQSTTSGKLKVLMSLLHQ 627

Query: 66  ANAA----PIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIP 110
                    ++V  ++   L  +                     +    + ++N    I 
Sbjct: 628 IAHRSDNEKVVVISNYTQTLDIIGNLMSSASLSYLRLDGSTPTKERDAIVNDFNRSQTIF 687

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  S G GLNL  G + L+ F   W+       ++   ++R  + G K+  F+Y L
Sbjct: 688 GFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKPCFIYRL 741

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +    IDE + QR   K+ +    L+ 
Sbjct: 742 VTTGCIDEKIFQRQLMKNNLSKKFLDD 768


>gi|198463980|ref|XP_002135618.1| GA28654 [Drosophila pseudoobscura pseudoobscura]
 gi|198151489|gb|EDY74245.1| GA28654 [Drosophila pseudoobscura pseudoobscura]
          Length = 1677

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1063 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCDHTGGH 1122

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1123 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLSWRQFGYLRLD 1182

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     I +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1183 GTTKAEDRGELLRKFNAKGSDIFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1237

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1238 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1286


>gi|149239807|ref|XP_001525779.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449902|gb|EDK44158.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1139

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 28/205 (13%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEV---------HDEKIKALEVIIEKANAAP--I 71
             S +      ++ N       ++ ++++            KI  L  ++ +        
Sbjct: 790 LTSLALINVFRKICNSPSLLATDEFYQKIATNTFKLSTSSGKIHVLIPLLLEITECKERT 849

Query: 72  IVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++  ++   L  L+    +              +     + E+N   +I +      S G
Sbjct: 850 VLISNYTKTLDLLEHVLRKLNLRYTRLDGSTPNNMRNKLVNEFNRNEEIHVFLLSSKSGG 909

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL  G + L+ F   W+        +   ++R  + G  +  F+Y L     IDE +
Sbjct: 910 MGINL-VGASRLILFDNDWNPST-----DLQSLSRIHRDGQTKPCFIYRLFTAGCIDEKI 963

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
            QR   KS +    L+        V
Sbjct: 964 FQRQLMKSKLSSKFLDNDNASKTDV 988


>gi|238882230|gb|EEQ45868.1| TATA-binding protein associated factor MOT1 [Candida albicans WO-1]
          Length = 1917

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            +K +  I+E       + +  F                       ++++N +  I +L  
Sbjct: 1695 LKDMLDIVENELLRKYLPSVTFMR--------LDGSTDPRDRQSIVRKFNEDPSIDVLLL 1746

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI ++
Sbjct: 1747 TTKVGGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKD 1800

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K  I   ++N
Sbjct: 1801 TLEEKIMGLQKFKMNIASTIVN 1822


>gi|224110590|ref|XP_002315568.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864608|gb|EEF01739.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1050

 Score = 88.7 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY--------DEEKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 421 QMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLV 480

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+        L              
Sbjct: 481 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD 540

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I  +N+             + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 541 ASIDAFNKPGSEKFCFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 594

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 595 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 637


>gi|315043318|ref|XP_003171035.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
 gi|311344824|gb|EFR04027.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
           118893]
          Length = 922

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 535 NSESALQLITILKKVCNSPSLLKPKLEDNGKAEDTSMSAFISSLQPNIHRCLVAGSSGKI 594

Query: 57  KALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++    +     +++  ++ S L  L                     K    + +
Sbjct: 595 RVLDQLLYNLQSKTTEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPASKRQALVDD 654

Query: 104 WNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 655 FNRSPPSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 708

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 709 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 744


>gi|301117680|ref|XP_002906568.1| chromodomain-helicase-DNA-binding protein 1 [Phytophthora infestans
           T30-4]
 gi|262107917|gb|EEY65969.1| chromodomain-helicase-DNA-binding protein 1 [Phytophthora infestans
           T30-4]
          Length = 875

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 37/220 (16%)

Query: 6   KFQRELYCDLQGENIEAFNSASK-----------TVKCLQLANGAVYYDE-------EKH 47
             QR  Y ++  +N E  N A++             +  +  N    +         E  
Sbjct: 296 AMQRAYYKEVIAKNAEVLNRAARAQGNRVPLLNILPQLRKACNHPYLFPGAEPEPFVEGS 355

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
               +  K+  L  I+   K     +++       L  +Q          +         
Sbjct: 356 HLYENSGKLFVLHQILPRLKQKGHRVLLFSQSPPFLDIIQDFLTLESFAYERIDGSVRGK 415

Query: 98  ---PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               C  +   + +  +      + G GLNLQ   + ++F    ++ +      +   + 
Sbjct: 416 ERWQCIERFKKDPETFVFLISTRAGGLGLNLQS-ADTVIFADSDYNPQT-----DLQAIA 469

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R  + G  + + V   +  NT++E + +R   K  + D +
Sbjct: 470 RAYRLGQTKPIHVIKFLCANTVEESIYRRSLKKMRMADRI 509


>gi|195127720|ref|XP_002008316.1| GI13420 [Drosophila mojavensis]
 gi|193919925|gb|EDW18792.1| GI13420 [Drosophila mojavensis]
          Length = 1723

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1105 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1164

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1165 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLSWRQFGYLRLD 1224

Query: 91   -GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N       +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1225 GTTKAEDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1279

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1280 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1328


>gi|145329971|ref|NP_001077971.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253007|gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3543

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1008 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1067

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1068 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1127

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1128 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1181

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|13603721|gb|AAK31908.1|AF247809_1 putative chromatin remodeling protein SYD [Arabidopsis thaliana]
          Length = 3574

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1008 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1067

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1068 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1127

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1128 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1181

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|30683830|ref|NP_850116.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253006|gb|AEC08100.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3574

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1008 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1067

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1068 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1127

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1128 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1181

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|30683833|ref|NP_850117.1| SYD (SPLAYED); ATPase/ chromatin binding [Arabidopsis thaliana]
 gi|330253005|gb|AEC08099.1| ATPase splayed [Arabidopsis thaliana]
          Length = 3529

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1008 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1067

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1068 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1127

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1128 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1181

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|20197603|gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis
            thaliana]
          Length = 3571

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1005 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1064

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1065 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1124

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1125 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1178

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1179 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1221


>gi|60499608|gb|AAX22009.1| SPLAYED splice variant [Arabidopsis thaliana]
          Length = 3543

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1008 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPP 1067

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1068 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1127

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1128 RGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1181

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1224


>gi|255721613|ref|XP_002545741.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
 gi|240136230|gb|EER35783.1| hypothetical protein CTRG_00522 [Candida tropicalis MYA-3404]
          Length = 1368

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 54   EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCT 100
             K+  L+ ++   K N   I++ +     +   Q+                    +    
Sbjct: 1218 GKLAKLDELLVDLKKNGHRILIYFQMTRMMEIFQEYLAFRNYKFMRLDGSTTIEARRELV 1277

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             Q     +  +      + G GLNL    + ++F+   W+       ++   + R  + G
Sbjct: 1278 TQWQTNPEFFIFMLSTRAGGLGLNLTS-ADTVIFYDSDWNPT-----VDAQAMDRAHRIG 1331

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + V VY L+ +NTI+E + Q+ + K  IQ L++N
Sbjct: 1332 QTKVVTVYRLLTKNTIEERIRQKAQNKEEIQKLVIN 1367


>gi|157870828|ref|XP_001683964.1| helicase-like protein [Leishmania major strain Friedlin]
 gi|68127031|emb|CAJ05517.1| putative helicase-like protein [Leishmania major strain Friedlin]
          Length = 1043

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 66/204 (32%), Gaps = 25/204 (12%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
               L  +     +  S   +       A     +         K++ L+ ++ +     
Sbjct: 564 ALRLLADKGRTHGSQGSVEKRMR-----AAGVPMDAAHLIDPSAKMRYLDTLLPQLKEQG 618

Query: 69  APIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG--KIPLLFAHP 116
              ++  +F + L  L+                    +   +I  +N       L     
Sbjct: 619 HRCLIFSNFTTTLDLLEAMCHLRGHSYERLDGSCNRVERELSILRYNHPASSCFLFLVTT 678

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+ L  G + ++ F   ++ +      +R    R  + G  R V VY L  Q TI
Sbjct: 679 TAGGVGVTLT-GADTVILFDAHFNPQL-----DRQAADRAHRIGQARTVHVYRLCLQGTI 732

Query: 177 DELVLQRLRTKSTIQDLLLNALKK 200
           +E +      K+ + D ++   ++
Sbjct: 733 EEHIRDIAARKAYLGDFIVEGGQR 756


>gi|73997418|ref|XP_867816.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 11 [Canis familiaris]
          Length = 1899

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 38/226 (16%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH-WKEVHDEKIKAL 59
            K Y       +  L         +  +  +   +  N    +              +   
Sbjct: 967  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMVCCASSCSSLGWS 1026

Query: 60   EVII------------------EKANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
              I                    K     +++       L  L+               G
Sbjct: 1027 CSICALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGG 1086

Query: 92   RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T +     I  +N              + G G+NL    + ++ +   W+        +
Sbjct: 1087 ITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HND 1140

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1141 IQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1186


>gi|297826111|ref|XP_002880938.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297326777|gb|EFH57197.1| hypothetical protein ARALYDRAFT_481680 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 3451

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 34/223 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQLANGAVYYD----EEKHWKEVH---- 52
             Y K   +   D  G    A + A     ++   + N          E  +    H    
Sbjct: 1004 AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHAEEVNNKIPKHFLPP 1063

Query: 53   ----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP-QGRTLDK--------- 96
                  K++ L+ ++ K       ++        L  ++     +G    +         
Sbjct: 1064 IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGD 1123

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N+   P  +      + G G+NLQ   + ++ F   W+ +     ++     
Sbjct: 1124 RGALIDGFNKSGSPYFIFLLSIRAGGVGVNLQA-ADTVILFDTDWNPQ-----VDLQAQA 1177

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G K+ V V      N+++E V      K  + +  + A
Sbjct: 1178 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1220


>gi|167035744|ref|YP_001670975.1| non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
 gi|166862232|gb|ABZ00640.1| Non-specific serine/threonine protein kinase [Pseudomonas putida
           GB-1]
          Length = 633

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 26/214 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-EKIKALEV 61
            Y   +  +  +       A  +        +        D      +     K +  + 
Sbjct: 410 AYDAERNRINAEYG-----AAATLVALTSLRRFCAHPSLMDSTSGSVDPMSFSKFRRFDE 464

Query: 62  IIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNE-G 107
           I+E+       +I+   F +    + +                  +D     I  ++   
Sbjct: 465 IVEEIFAIGEKVIIFTSFTAMADMIARHIETRYGAFAGVIDGRLAIDDRQPLIDRFSSVK 524

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               L  +P + G GLN+    N ++ ++  W+       +E     R  + G +  V V
Sbjct: 525 GGAALVLNPKAGGAGLNITA-ANHVIHYNPEWNPA-----MEDQASARAYRRGQELPVTV 578

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + L+  +T++++V +RLR K  + D  +  ++ +
Sbjct: 579 HRLLVSDTVEDVVDERLRRKRALSDTAVIGVEGK 612


>gi|327356510|gb|EGE85367.1| SWI/SNF family DNA-dependent ATPase Ris1 [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 1150

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + ++E    L    + +            + +     D++     +  +    L  +++ 
Sbjct: 952  EAKKEYIRYLNDNWVTSAKIEKTMETLRSIQSRIPEGDDQPEKTIIFSQ-FTTLLDLLQV 1010

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLN 124
                       +                  +    + E+++ K   ++     +   GLN
Sbjct: 1011 PIEREGWGYCRY-----------DGSMQPSERNEAVLEFSDSKDRTIMLISLKAGNSGLN 1059

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++    +W+       IE   + R  + G  R V V+ +  + T+++ +L+  
Sbjct: 1060 LT-VASQVIILDPFWNP-----YIEEQAIDRAHRIGQLRPVMVHRIFVKGTVEDRILELQ 1113

Query: 185  RTKSTIQDLLLNALKKETI 203
              K  + +  L+    +TI
Sbjct: 1114 DRKRALVEGALDEKASQTI 1132



 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L+   I     N     ++  Q        D+          KI
Sbjct: 748 LYDALESKTQVRFNKYLREGTIGRNYSNILVLLLRLRQTCCHPHLIDDLSVETIAEAAKI 807

Query: 57  KALEV 61
             +E 
Sbjct: 808 DLIEN 812


>gi|226292781|gb|EEH48201.1| helicase swr1 [Paracoccidioides brasiliensis Pb18]
          Length = 1679

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1338 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1381

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1382 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1440

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1441 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1495

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1496 MLDDVIIQEGE 1506


>gi|126322473|ref|XP_001379449.1| PREDICTED: similar to RAD54B protein [Monodelphis domestica]
          Length = 1087

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVY----------------- 41
           ++ Y K          LQG    A +         +L N                     
Sbjct: 473 IELYRKLLSSQAVRFCLQGILENAPHLL-CIGALKKLCNHPCLLFKSLKEKENNSSSEQY 531

Query: 42  ---------------YDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLA 82
                                + E    K++ L  ++      + +  +++  ++   L 
Sbjct: 532 EEYNFSEGLIDAYPADYNPNTFSETDSGKLQVLTKLLAAIRELSPSEKVVLVSNYTQTLN 591

Query: 83  R-LQKAFPQGRTLDK---------DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGN 130
                    G T  +             +  +N     +        + G GLNL  GG+
Sbjct: 592 ILQAVCTRHGYTCTRLDGQTPVVQRQQIVDGFNCKHSSVFIFLLSSKAGGVGLNL-IGGS 650

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   + R  + G K +V +Y L+   TI+E + QR  +K  +
Sbjct: 651 HLILYDIDWNPAT-----DIQAMARVWRDGQKHSVHIYRLLTTGTIEEKIYQRQISKQGL 705

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 706 SGAVVDLAK 714


>gi|306419502|emb|CBW48565.1| C. elegans protein Y111B2A.22d, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 2249

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1077 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFY 1135

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1136 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAI 1190

Query: 196  NA 197
            + 
Sbjct: 1191 DE 1192


>gi|300796537|ref|NP_001178977.1| chromodomain-helicase-DNA-binding protein 1 [Bos taurus]
          Length = 1810

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 735 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 794

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 795 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 854

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 855 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 908

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 909 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 952


>gi|297477562|ref|XP_002689460.1| PREDICTED: chromodomain helicase DNA binding protein 1-like [Bos
           taurus]
 gi|296485027|gb|DAA27142.1| chromodomain helicase DNA binding protein 1-like [Bos taurus]
          Length = 1810

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 735 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 794

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 795 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 854

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 855 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 908

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 909 RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 952


>gi|167535306|ref|XP_001749327.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772193|gb|EDQ85848.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1151

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 22/160 (13%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDP 98
           H  K+  L  ++ +       +++       L  +                  +T D+  
Sbjct: 556 HSGKLACLNDLLPRLRRGGHRVLIFSQSRKFLQAVASVLDHHGLTFQQLDGSVKTADERQ 615

Query: 99  CTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++N+        +       G GL L  G N ++     W+       ++   V R
Sbjct: 616 ALVDKFNKATTDELFAMLLTTQVGGVGLTLT-GANRVIICDPSWNPS-----VDAQAVDR 669

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  R V VY L+   TI+E + ++   K ++Q   +
Sbjct: 670 AYRIGQTREVLVYRLVTCGTIEEKMYRKQIFKGSLQRSAM 709


>gi|156030975|ref|XP_001584813.1| hypothetical protein SS1G_14268 [Sclerotinia sclerotiorum 1980]
 gi|154700659|gb|EDO00398.1| hypothetical protein SS1G_14268 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1595

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++ L+ ++ K        ++       L  L++ 
Sbjct: 1266 KRLLQYDCG----------------KLQTLDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1309

Query: 88   FPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N   +I        S G G+NL  G + ++F+ 
Sbjct: 1310 LNIHGHKYLRLDGATKIEQRQILTDRFNNDTRILAFILSSRSGGLGINLT-GADTVIFYD 1368

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1369 LDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKANQKRMLDDVVIQ 1423

Query: 197  ALK 199
              +
Sbjct: 1424 EGE 1426


>gi|240281981|gb|EER45484.1| SHREC complex subunit Mit1 [Ajellomyces capsulatus H143]
          Length = 676

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 31/198 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
            ++  +       Y +    + V+             K++ LE+++ K       +++  
Sbjct: 53  LMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFS 112

Query: 76  HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
            F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 113 QFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQKQIDEFNVPGSPYFAFLLSTRSGGVGI 172

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + +V     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++Q 
Sbjct: 173 NL-ATADTVVIMDPDFNPHQ-----DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQM 226

Query: 184 LRTKSTIQDLLLNALKKE 201
            + K  +  +L+  +  E
Sbjct: 227 GKKKMALDQVLIEHMDVE 244


>gi|145362201|ref|NP_973689.2| transcription regulatory protein SNF2, putative [Arabidopsis
           thaliana]
 gi|330255399|gb|AEC10493.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 877

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 84/235 (35%), Gaps = 41/235 (17%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEV 51
           K Y    ++EL    +L        +  +  ++  +  +    +        EE      
Sbjct: 315 KIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQ 374

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ ++++ +     +++     S L  LQ                   ++   
Sbjct: 375 ASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFA 434

Query: 100 TIQEWNEGKIP------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            I+ ++                 +      + G GLNL    + ++F+   W+ +     
Sbjct: 435 AIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ----- 488

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKE 201
           +++  + R  + G    V    L+ +++++E++L+R   K  +   ++ + ++++
Sbjct: 489 VDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEK 543


>gi|312215580|emb|CBX95532.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1194

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 22/212 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANG--AVYYDEEKHWKEVHDEKIKALEVII- 63
             + +++ +   + I       +  +C QLA    A+   E K+ + +   K+ AL  ++ 
Sbjct: 896  LREDMFAESNADIIYEELQLYQDYQCHQLATKYKALKKFELKNHEWMDSGKVTALLALLK 955

Query: 64   -EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPL 111
              K N    +V   F S          D             + +    +   +++  I L
Sbjct: 956  KYKENGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIAERQSLMDVFYSDTSIEL 1015

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  S G G+NL    N ++ F   ++ ++     +     R  + G  R V V  L+
Sbjct: 1016 FMISTKSGGAGINL-ACANKVIIFDSSFNPQD-----DIQAENRAHRVGQTREVEVVRLV 1069

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + T++E +     +K  + D ++   + E+ 
Sbjct: 1070 TKGTVEEQIYALGVSKLEL-DKMVQGEEAEST 1100


>gi|123493351|ref|XP_001326267.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121909179|gb|EAY14044.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1325

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 70/231 (30%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     +   +L          +  + +++  ++ N      E    ++    K    E
Sbjct: 434 IYKLLLDDHRDELLQTLGTSSLTSFKNISMELRKICNHPFLTHETLVKEQYKQRKGINRE 493

Query: 61  VIIEKA-----------------------NAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
           +  ++                            +++       L  +Q+           
Sbjct: 494 MTEQEDMESLVGVSGKMILLDKLLPKLKEGGHKVLIFSQMTKVLDIIQRFLDWRNFHYER 553

Query: 96  --------KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +   +I+ +       +      + G G+NL    + ++ +   W+ +    
Sbjct: 554 LDGSVSVERRSESIERFTTFDDSFVFLLSTRAGGQGINLT-VADTVIIYDSDWNPQN--- 609

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +   + R  + G  + V VY LI +N+ +E + +R   K  +  ++ + 
Sbjct: 610 --DIQAMARCHRIGQDKEVKVYRLITKNSYEEEMFERASMKLGLDKVITDG 658


>gi|116180352|ref|XP_001220025.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
 gi|88185101|gb|EAQ92569.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
          Length = 1644

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 35/226 (15%)

Query: 1   MKQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y       Y  L+   N    +  +  ++  +++N    +   +             
Sbjct: 712 LEYYKNILTRNYAALRDASNGHKQSLLNIMMELKKVSNHPYMFAGAEERVLAGSSRREDQ 771

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 772 IKGLITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILGDYLRVRGYQFQRLDGTIP 831

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +N              + G G+NL    + ++ +   W+ +      +  
Sbjct: 832 AGPRRMAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DLQ 885

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  + G KR V VY L+A+ TI+E V+ R R K  ++ L + A
Sbjct: 886 AMARAHRIGQKRPVNVYRLVAKQTIEEEVVNRARNKLFLEYLTIQA 931


>gi|306419500|emb|CBW48563.1| C. elegans protein Y111B2A.22b, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1882

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F S              +++    ++ +N + K+        S G G+NL  G + ++F+
Sbjct: 1223 FLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLT-GADTVIFY 1281

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+       ++     R  + G  R V +Y LI++ TI+E +L++   K  + +L +
Sbjct: 1282 DSDWNPT-----MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAI 1336

Query: 196  NA 197
            + 
Sbjct: 1337 DE 1338


>gi|42523166|ref|NP_968546.1| helicase/SNF2 family protein [Bdellovibrio bacteriovorus HD100]
 gi|39575371|emb|CAE79539.1| putative helicase/SNF2 family domain protein [Bdellovibrio
            bacteriovorus HD100]
          Length = 1330

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y++  ++   +  GE+       +  ++  Q  +      E K+ K     K++AL   
Sbjct: 1106 AYNQRIQDTIRE-AGESQSQLQMLTALLRLRQACSDPGALPEVKYEKTPP--KLEALMDS 1162

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI- 109
            +++   +    +V   F   L R +                    +    ++++NE K  
Sbjct: 1163 LQEIIESGESALVFTQFLQTLERTEKLLKAVGIPVFVLHGAIPTKQRQKILKDFNETKGG 1222

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    + +     WW+       +E     R  + G ++AV V+ 
Sbjct: 1223 AVLVMTLKTGGVGLNLTK-ASYVFHLEPWWNPS-----VENQATDRAHRLGQRKAVQVFR 1276

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             I   +++E +      K+     L +  + 
Sbjct: 1277 YIMHESLEEKMELLKERKNRKFQSLFSETEA 1307


>gi|297848774|ref|XP_002892268.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338110|gb|EFH68527.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 843

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIP 110
           ++E+  +A  IV   F S L  +     +                +D    +   +    
Sbjct: 684 MVERDGSAKAIVFSQFTSFLDIINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCR 743

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G  LNL    + +     WW+       +ER    R  + G  + + V   
Sbjct: 744 VFLMSLKAGGVALNLT-VASHVFMMDPWWNPA-----VERQAQDRIHRIGQYKPIRVVRF 797

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I +NT++E +L+  + K  + +  +  
Sbjct: 798 IIENTVEERILRLQKKKELVFEGTVGG 824


>gi|134076845|emb|CAK45266.1| unnamed protein product [Aspergillus niger]
          Length = 1504

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 679 LEYYKNILTKNYAALNDGARGQKQSLLNIMMELKKASNHPFMFPNAEARILEGSTRREDV 738

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L      +G T  +      
Sbjct: 739 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEFRGYTYQRLDGTIP 798

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 799 AAARRLAIEHYNAPGSNDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 852

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 853 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 891


>gi|308509388|ref|XP_003116877.1| CRE-BTF-1 protein [Caenorhabditis remanei]
 gi|308241791|gb|EFO85743.1| CRE-BTF-1 protein [Caenorhabditis remanei]
          Length = 1668

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 1    MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            M  Y    +     D+  +   A +   K     QL        E +  K   DE +   
Sbjct: 1392 MLVYDTLLKIGAPQDILAKARTARSG--KMEALKQL------LIECEICKNPDDEVLPEA 1443

Query: 60   EVI---IEKANAAPIIVAYHFNSDLARLQKAFPQGR--------------TLDKDPCTIQ 102
            + +    E       ++   + +    +  A   G                       + 
Sbjct: 1444 DELGGLNEAGPGHRALIFCQWKTSAKLVSNALSSGEFGSVVSHLVLDGDVPAGDRMKMVN 1503

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N +  I +L       G GLNL  G + ++F    W+      M +   + R  + G 
Sbjct: 1504 RFNEDKTIDVLILTTHVGGVGLNLT-GADTVIFLDHDWNP-----MKDLQAIDRAHRLGQ 1557

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             R V VY LI Q T++E V+   + K      L+ A     + +
Sbjct: 1558 TRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTM 1601


>gi|194100669|ref|YP_002003418.1| gp60 [Mycobacterium phage Predator]
 gi|192758385|gb|ACF05157.1| gp60 [Mycobacterium phage Predator]
          Length = 670

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 26/219 (11%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLAN------GAVYYDEEKHWKEVHDE 54
           KQY + +RE   ++ GE  I      ++  +C Q+AN      G       K        
Sbjct: 433 KQYREIEREALINIGGEDEITVNGVLAEMTRCKQIANSCLKTDGFKSDGNPKVVPVFPSN 492

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQ 102
           K + +   +     N    IVA  F   L                +       +     +
Sbjct: 493 KAEWIHDFLVDRIENGTKTIVASQFTGFLNTLSAELEKKGIKHYLYTGATNEPERKRIRK 552

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+       ++  +  S G  L L    + +V     W  ++ +Q+ +R       +   
Sbjct: 553 EFQSESGDMVVLLNTKSGGVSLTL-DLADDVVIVDQTWIPDDQEQVEDR-----AHRVSR 606

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V ++ L +  TIDE +      +      +L   + 
Sbjct: 607 NHNVVIWNLASLGTIDEDIAVLNTERGEAISSILEKQRG 645


>gi|146415248|ref|XP_001483594.1| hypothetical protein PGUG_04323 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1367

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 40/211 (18%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDEKIKAL 59
           G  I   N  ++  K    +N    +D  +                     +   K+  L
Sbjct: 592 GLQISLLNVMAELKK---ASNHPYLFDGAEERVLGTLTSSANRESVLRGMIMSSGKMVLL 648

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           E ++ +       +++       L  L                G    +   +I  +N  
Sbjct: 649 EQLLTRLRKEGHRVLIFSQMVRMLDILGDYLSIKGYAFQRLDGGIPSSQRRISIDHFNAP 708

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G G+NL    + ++ F   W+ +      +   + R  + G K  V
Sbjct: 709 DSRDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMARAHRIGQKNHV 762

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY  ++++TI+E +L+R R K  ++  +++
Sbjct: 763 SVYRFVSKDTIEEEILERARKKMILEYAIIS 793


>gi|15220993|ref|NP_172004.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|332189671|gb|AEE27792.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
          Length = 833

 Score = 88.7 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIP 110
           ++E+  +A  IV   F S L  +     +                +D    +   +    
Sbjct: 674 MVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCR 733

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G  LNL    + +     WW+       +ER    R  + G  + + V   
Sbjct: 734 VFLMSLKAGGVALNLT-VASHVFMMDPWWNPA-----VERQAQDRIHRIGQYKPIRVVRF 787

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I +NT++E +L+  + K  + +  +  
Sbjct: 788 IIENTVEERILRLQKKKELVFEGTVGG 814


>gi|292630870|sp|A6ZL17|RDH54_YEAS7 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|151946464|gb|EDN64686.1| rad54-like protein [Saccharomyces cerevisiae YJM789]
          Length = 924

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K++ 
Sbjct: 575 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLRV 634

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 635 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 694

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 695 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 748

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 749 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 781


>gi|320589247|gb|EFX01709.1| chromodomain helicase [Grosmannia clavigera kw1407]
          Length = 1719

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
           Y       Y  L         +  +  ++  +++N    +   +                
Sbjct: 719 YKNILTRNYAALSDASGGHKQSLLNIMMELKKISNHPYMFAGVEERVLKGSVRREDQIKG 778

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 779 LITSSGKMMLLDQLLAKLKKDNHRVLIFSQMVKMLDLLADYLRVRGYQFQRLDGTIPAGP 838

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ +   W+ +      +   + 
Sbjct: 839 RRMAINHFNAENSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DLQAMA 892

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 893 RAHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 935


>gi|260949593|ref|XP_002619093.1| hypothetical protein CLUG_00252 [Clavispora lusitaniae ATCC 42720]
 gi|238846665|gb|EEQ36129.1| hypothetical protein CLUG_00252 [Clavispora lusitaniae ATCC 42720]
          Length = 351

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 20/165 (12%)

Query: 47  HWKEVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
           H   +   K+     +I+          IIV  HF +    +  A  Q            
Sbjct: 166 HKGFLPSAKMNKTLDLIKDITTSNLDEKIIVFSHFTTTFDLMGYALKQENIKYLRYDGSM 225

Query: 98  -----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  TI+++ EG   +L     +   GL L    + ++    +W+       +E   
Sbjct: 226 NIDSKNATIKDFYEGNTRVLLLSLKAGNVGLTLT-CASHVIIMDPFWNP-----FVEDQA 279

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  + V VY ++ ++++++ ++     K  + +  L+ 
Sbjct: 280 MDRAHRFGQMKPVHVYKILIRDSVEDRIMDLQERKKELINAALDE 324


>gi|154297606|ref|XP_001549229.1| hypothetical protein BC1G_12648 [Botryotinia fuckeliana B05.10]
 gi|150858471|gb|EDN33663.1| hypothetical protein BC1G_12648 [Botryotinia fuckeliana B05.10]
          Length = 1607

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 35/183 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++ L+ ++ K        ++       L  L++ 
Sbjct: 1278 KRLLQYDCG----------------KLQTLDKLLRKLQAGGHRALIFTQMTKVLDILEQF 1321

Query: 88   FPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N   +I        S G G+NL  G + ++F+ 
Sbjct: 1322 LNIHGHKYLRLDGATKIEQRQILTDRFNNDTRILAFILSSRSGGLGINLT-GADTVIFYD 1380

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1381 LDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKANQKRMLDDVVIQ 1435

Query: 197  ALK 199
              +
Sbjct: 1436 EGE 1438


>gi|116197901|ref|XP_001224762.1| hypothetical protein CHGG_07106 [Chaetomium globosum CBS 148.51]
 gi|88178385|gb|EAQ85853.1| hypothetical protein CHGG_07106 [Chaetomium globosum CBS 148.51]
          Length = 1129

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 17/162 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------- 92
                + +     KI    +     N   ++V  H    L  LQ  F             
Sbjct: 564 MLNLANSEFCGKWKILKKLLRFWHENGDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGT 623

Query: 93  -TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            + ++    + ++N      +      + G GLN+    N +V F   W+        + 
Sbjct: 624 LSYEERQKVVDDFNSDPSQFVFLISTKAGGVGLNITS-ANKVVIFDPHWNPA-----YDL 677

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 678 QAQDRAYRIGQVRDVDVFRLVSAGTIEEIVYARQIYKQQQAN 719


>gi|308486424|ref|XP_003105409.1| CRE-ROM-4 protein [Caenorhabditis remanei]
 gi|308256514|gb|EFP00467.1| CRE-ROM-4 protein [Caenorhabditis remanei]
          Length = 1512

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRT----LDKDPCTIQEWNE--GKIPLLFAHPASCGHG 122
              +    F  D    + ++         +      ++ +N+      +      + G G
Sbjct: 6   CEFLEFNVFRLDGKTQKCSYFLTEILNLQVQDRQKLVRHFNDNRDASNVFLLSTKAGGVG 65

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL  G + L+ +   W+    QQ + RI      + G  R   +Y LI   TI+E +LQ
Sbjct: 66  LNL-IGASRLILYDSDWNPANDQQAMARIW-----RDGQVRPCHIYRLITTGTIEEKMLQ 119

Query: 183 RLRTKSTIQDLLLNALK 199
           R   K+ +   +++A++
Sbjct: 120 RQIKKTGL-GCVIDAIE 135


>gi|225562568|gb|EEH10847.1| helicase swr1 [Ajellomyces capsulatus G186AR]
          Length = 1674

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1332 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1375

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1376 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1434

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  I++ TI+  +L++   K 
Sbjct: 1435 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFISEYTIESNILRKANQKR 1489

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1490 MLDDVIIQEGE 1500


>gi|195019167|ref|XP_001984924.1| GH16759 [Drosophila grimshawi]
 gi|193898406|gb|EDV97272.1| GH16759 [Drosophila grimshawi]
          Length = 1716

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1091 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1150

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1151 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLD 1210

Query: 91   -GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N     + +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1211 GTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1265

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1266 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1314


>gi|126336343|ref|XP_001367984.1| PREDICTED: similar to hCG1997495, [Monodelphis domestica]
          Length = 1476

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGK---IPLLFAHPASCGH 121
            P + +     D   ++           +  +    I ++N+     + L      +   
Sbjct: 773 MPCLPSSDGQRDQNWVRNFSYYRLDGSTSASERERLINQFNDPNNSSVWLFLLSTRAGCL 832

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL  G N +V F   W+        +   V R  + G K+   +Y L++  T+++ + 
Sbjct: 833 GVNL-IGANRVVVFDASWNP-----CHDAQAVCRVYRYGQKKPCHIYRLVSDYTLEKKIY 886

Query: 182 QRLRTKSTIQDLLLNALK 199
            R  +K  + D +++ L 
Sbjct: 887 DRQISKQGMSDRVVDDLN 904


>gi|326473366|gb|EGD97375.1| dsDNA-dependent ATPase [Trichophyton tonsurans CBS 112818]
          Length = 922

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 533 NSESALQLITILKKVCNSPSLLKPKVEDNGKGEDSSMSAFISSLPPNIHRCLAAGSSGKI 592

Query: 57  KALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++    +     +++  ++ S L  L                     K    +++
Sbjct: 593 RVLDQLLYNLQSKTTEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPATKRQALVED 652

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 653 FNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 706

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 707 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|292630891|sp|B5VE38|RDH54_YEAS6 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|207347718|gb|EDZ73802.1| YBR073Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 924

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K++ 
Sbjct: 575 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLRV 634

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 635 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 694

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 695 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 748

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 749 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 781


>gi|159467693|ref|XP_001692026.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158278753|gb|EDP04516.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 845

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N+     +      + G GLNL  G N LV +   W+    QQ + RI    
Sbjct: 520 RQIIVDNFNKLNMGQVFLLSTRAGGAGLNL-VGANHLVLYDSDWNPAMDQQAMARIW--- 575

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  +   VY ++   TI+E V QR   K+ +    +
Sbjct: 576 --RDGQTKPCHVYRMLTTGTIEEKVYQRQLMKADLASATM 613


>gi|320588829|gb|EFX01297.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 1166

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 26/183 (14%)

Query: 30  VKCLQLA---NGAVYYDEEKHWKEVHD----EKIKALEVII--EKANAAPIIVAYHFNSD 80
           ++ LQ       A  Y        + D     K K L  ++     +   ++V  H    
Sbjct: 601 MRLLQTCEPDGWASLYRHRDSMVHLADPELCGKWKVLRKLLRFWHDSGDKVLVFSHTVRL 660

Query: 81  LARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
           L  LQ  F              + ++    + ++N +    +      + G GLN+    
Sbjct: 661 LQMLQHLFHSTSYSVSYLDGSLSYEERQRVVDDFNTDPAQFVFLISTRAGGVGLNITS-A 719

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           N +V     W+        +     R  + G  R V V+ L++  TI+E+V  R   K  
Sbjct: 720 NKVVIVDPHWNPA-----YDLQAQDRAYRIGQVRDVDVFRLVSAGTIEEIVYARQIYKQQ 774

Query: 190 IQD 192
             +
Sbjct: 775 QAN 777


>gi|303283067|ref|XP_003060825.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458296|gb|EEH55594.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 214

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALEVIIEKAN--AAPII 72
             ++  ++      + +E     V                K+ AL+ ++ K +     ++
Sbjct: 34  LLMQLRKVCCHPFLFGDEAVHAAVAKHGGDRVEALIAASGKLTALDEMLPKLHAGGHKVL 93

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCG 120
           +   F+  L  L++                +L +       +N+      +      + G
Sbjct: 94  IFSQFSMMLDVLEEFCEARGHAHLRLDGSTSLARRRYETALFNKPDGRHFVYLCSTRAGG 153

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NLQ   + ++     W+        ++    R  + G KR V V  +   ++++E +
Sbjct: 154 LGINLQS-ADTVILADPDWNPT-----YDQQAQDRAHRLGQKRPVTVIRMCHASSVEEGI 207

Query: 181 LQRLRTK 187
           L     K
Sbjct: 208 LAVAAKK 214


>gi|47226612|emb|CAG07771.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1037

 Score = 88.3 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 41/230 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVH----- 52
            Y   Q+ +      E  +          +  ++  ++ N    +   +     H     
Sbjct: 457 LYRHMQKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPN 516

Query: 53  -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                        K + L+ I+ K       +++     S +  ++  F           
Sbjct: 517 GIISGHDLYRASGKFELLDRILPKLQATNHRVLLFCQMTSLMTIMEDYFSYRNFLYLRLD 576

Query: 91  -GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +     ++++NE      +      + G GLNLQ   + +V F   W+  +    
Sbjct: 577 GTTKSEDRAALLKKFNEEGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ---- 631

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 632 -DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 680


>gi|240281002|gb|EER44505.1| helicase swr1 [Ajellomyces capsulatus H143]
          Length = 1674

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1332 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1375

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1376 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1434

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  I++ TI+  +L++   K 
Sbjct: 1435 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFISEYTIESNILRKANQKR 1489

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1490 MLDDVIIQEGE 1500


>gi|39978121|ref|XP_370448.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
 gi|145013481|gb|EDJ98122.1| hypothetical protein MGG_06945 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 27/178 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDL---- 81
           +  K                       K + L+ ++   + N   ++V  H    L    
Sbjct: 553 QLYKLR--------DSPLIQMDPEFCGKWRVLKDLLKFWEGNGDKVLVFSHSVKLLQVLR 604

Query: 82  ------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             +++    + ++N + +  +      + G GLN+    N +V 
Sbjct: 605 ALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQFVFLISTKAGGVGLNITS-ANKVVI 663

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           F   W+        +     R  + G  R V V+ L++Q TI+E+V  R   K    +
Sbjct: 664 FDPHWNPS-----WDLQAQDRAYRIGQTRDVDVFRLVSQGTIEEIVYARQIYKQQQAN 716


>gi|325092504|gb|EGC45814.1| helicase swr1 [Ajellomyces capsulatus H88]
          Length = 1674

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1332 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1375

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1376 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRSGGLGINLT-G 1434

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  I++ TI+  +L++   K 
Sbjct: 1435 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFISEYTIESNILRKANQKR 1489

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1490 MLDDVIIQEGE 1500


>gi|322496039|emb|CBZ31111.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 776

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 44/220 (20%)

Query: 15  LQGENIEAF-----NSASKTVKCLQLANGAVYY-----------------DEEKHWKEVH 52
           L G +  A      N         Q+ N                         +      
Sbjct: 272 LGGGDSSAAATVRTNPLLLLTMLSQICNHPWLSLLDEAFAAALSRNPYKAPVAEMGDVFG 331

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP--C 99
             K+     ++ +        +V       L          RL      G T  +     
Sbjct: 332 GAKLWVALQLLRRCVSEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAE 391

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G GL      + +V   + W+        +   + R  + 
Sbjct: 392 VERFNNDAGVWVCLLTTQVGGVGLTF-NAASAVVLLDISWNPSA-----DAQAIDRVHRI 445

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +R V V+ L+   T++E V +    K       L ++K
Sbjct: 446 GQRRDVVVFRLVTCGTVEEKVYRNQIFKRM---AALQSMK 482


>gi|195110153|ref|XP_001999646.1| GI22957 [Drosophila mojavensis]
 gi|193916240|gb|EDW15107.1| GI22957 [Drosophila mojavensis]
          Length = 1948

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 75/246 (30%), Gaps = 52/246 (21%)

Query: 1    MKQYHKF----QRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYY------------ 42
            ++ Y  F     ++    L          +          + N                 
Sbjct: 1639 LRLYEDFSNKHLKDCLDKLDDTENLGTKTHIFQALRYLQNVCNHPKLVLRQSGDDLSNVA 1698

Query: 43   -----DEEKHWKEVHDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLARLQKA- 87
                 +        H  K+ AL+ ++            +    ++     + L  ++   
Sbjct: 1699 AQLALNNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHDL 1758

Query: 88   ---FPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                    T  +             +  +N +  I +L       G GLNL  G + ++F
Sbjct: 1759 LRKHLPSVTYLRLDGSVPASLRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIF 1817

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+      M +   + R  + G K+ V VY LI +N+++E ++   + K    + +
Sbjct: 1818 VEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKILTANTV 1872

Query: 195  LNALKK 200
            ++A   
Sbjct: 1873 VSADNA 1878


>gi|162312570|ref|XP_001713118.1| SNF2 family helicase Swr1 [Schizosaccharomyces pombe 972h-]
 gi|46397086|sp|O13682|SWR1_SCHPO RecName: Full=Helicase swr1
 gi|159884045|emb|CAA22447.2| SNF2 family helicase Swr1 [Schizosaccharomyces pombe]
          Length = 1288

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR-- 83
            K     Q +        +K   +    K++ L+ +++   +N   +++       L    
Sbjct: 965  KINPLHQASTRLAIAFPDKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILE 1024

Query: 84   -------LQKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                    +     G T  +    +  +  N+ KIP+      S G G+NL  G + ++F
Sbjct: 1025 QFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLT-GADTVIF 1083

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+ +      +     R  + G  R V +Y LI++ T++  +L+R   K  +  ++
Sbjct: 1084 YDSDWNPQL-----DAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIV 1138

Query: 195  LNALK 199
            +   +
Sbjct: 1139 IQGGE 1143


>gi|169607597|ref|XP_001797218.1| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
 gi|160701447|gb|EAT85508.2| hypothetical protein SNOG_06857 [Phaeosphaeria nodorum SN15]
          Length = 1249

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 74/219 (33%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           ++ Y       Y  L +G      +  +  ++  + +N A+ +   +             
Sbjct: 363 LEYYKNILTRNYEALNEGGTGHKQSLLNIVMELKKASNHALLFPNAEAKFLKENATKDET 422

Query: 53  -------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRT 93
                    K+  L+ ++ K  A+   +++       L              +       
Sbjct: 423 LKALITTSGKMMLLDRLLTKLKADGHRVLIFSQMVHMLDILTDYLKLRNYTYQRLDGTVP 482

Query: 94  LDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 483 ASDRKIAIDHFNAPGSDDYCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQ 536

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G ++ V VY L++++TI+E +L+R R K  +
Sbjct: 537 AMARAHRIGQQKPVSVYRLVSKDTIEEEILERARNKRML 575


>gi|218191385|gb|EEC73812.1| hypothetical protein OsI_08529 [Oryza sativa Indica Group]
          Length = 1765

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLF 113
           K+     ++       L  L++                  ++    +Q +N   K  L  
Sbjct: 813 KSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGSTQPEERQTLMQRFNTNPKFFLFI 872

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               S G G+NL  G + ++F+   W+       +++    R  + G  R V +Y LI++
Sbjct: 873 LSTRSGGVGINL-VGADTVIFYDSDWNPA-----MDQQAQDRCHRIGQTREVHIYRLISE 926

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TI+E +L++   K  + DL++ 
Sbjct: 927 STIEENILKKANQKRALDDLVIQ 949


>gi|308802858|ref|XP_003078742.1| DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri]
 gi|116057195|emb|CAL51622.1| DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri]
          Length = 851

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNS 79
             ++  + V+  +  +G       +        K K L  ++   +      +V     +
Sbjct: 418 VDHAVEEDVELRKSCSGEAAAAACRGRSPSLSAKSKFLMSMLERFRIEGHRTLVFSQSQA 477

Query: 80  DLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
            L  ++    +                +D    +  ++  IP++       G GL L   
Sbjct: 478 TLDIIEANIREANIDFVRIDGKVNVDERDRRVTKFRSQDDIPVMLLTARVGGLGLTLTE- 536

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              ++ F   W+     Q ++R       + G  + V VY ++   TI+E V +R   K 
Sbjct: 537 ATRVIIFDPAWNPTTDNQSVDR-----AYRIGQTKDVVVYRMVTCGTIEEKVYRRQVFKG 591

Query: 189 TIQDLLLNALKKE 201
           ++     + +   
Sbjct: 592 SLSKACTDGVSGR 604


>gi|321398837|emb|CAM65175.2| putative DNA excision/repair protein SNF2 [Leishmania infantum
           JPCM5]
          Length = 776

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 44/220 (20%)

Query: 15  LQGENIEAF-----NSASKTVKCLQLANGAVYY-----------------DEEKHWKEVH 52
           L G +  A      N         Q+ N                         +      
Sbjct: 272 LGGGDTSAAATVRTNPLLLLTMLSQICNHPWLSLLDEAFAAALSRNPYKAPVAEMGDVFG 331

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP--C 99
             K+     ++ +        +V       L          RL      G T  +     
Sbjct: 332 GAKLWVALQLLRRCVSEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAE 391

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G GL      + +V   + W+        +   + R  + 
Sbjct: 392 VERFNNDAGVWVCLLTTQVGGVGLTF-NAASAVVLLDISWNPSA-----DAQAIDRVHRI 445

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +R V V+ L+   T++E V +    K       L ++K
Sbjct: 446 GQRRDVVVFRLVTCGTVEEKVYRNQIFKRM---AALQSMK 482


>gi|146074911|ref|XP_001462637.1| DNA excision/repair protein SNF2 [Leishmania infantum JPCM5]
          Length = 699

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 44/220 (20%)

Query: 15  LQGENIEAF-----NSASKTVKCLQLANGAVYY-----------------DEEKHWKEVH 52
           L G +  A      N         Q+ N                         +      
Sbjct: 272 LGGGDTSAAATVRTNPLLLLTMLSQICNHPWLSLLDEAFAAALSRNPYKAPVAEMGDVFG 331

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP--C 99
             K+     ++ +        +V       L          RL      G T  +     
Sbjct: 332 GAKLWVALQLLRRCVSEQRKTLVFSRSRRFLHLLSFLLQEWRLTHTQVDGNTPSERRCAE 391

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+  + +        G GL      + +V   + W+        +   + R  + 
Sbjct: 392 VERFNNDAGVWVCLLTTQVGGVGLTF-NAASAVVLLDISWNPSA-----DAQAIDRVHRI 445

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +R V V+ L+   T++E V +    K       L ++K
Sbjct: 446 GQRRDVVVFRLVTCGTVEEKVYRNQIFKRM---AALQSMK 482


>gi|115384896|ref|XP_001208995.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196687|gb|EAU38387.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1110

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
            K+ + +   K+  L  ++ +   N    ++   F   +  L++                 
Sbjct: 926  KNDEWMDSGKVNKLCELLRRFTANGDRCLIFSQFTLVMDILEQVLENQHLGFVRLDGRTN 985

Query: 94   LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 986  VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1039

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G  R V V  L+ ++TI+E +    +TK  +   +      E
Sbjct: 1040 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAVAGEDAAE 1088


>gi|58331268|ref|NP_060139.2| DNA excision repair protein ERCC-6-like [Homo sapiens]
 gi|121948339|sp|Q2NKX8|ERC6L_HUMAN RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like; AltName:
           Full=PLK1-interacting checkpoint helicase; AltName:
           Full=Tumor antigen BJ-HCC-15
 gi|84798788|gb|AAI11487.1| Excision repair cross-complementing rodent repair deficiency,
           complementation group 6-like [Homo sapiens]
 gi|155675838|gb|ABU25227.1| Plk1-interacting checkpoint helicase [Homo sapiens]
          Length = 1250

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436

Query: 42  -----------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K+  L  ++++        +V       L  +++  
Sbjct: 437 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 496

Query: 89  PQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           L +    I          +        G GL L      +V F 
Sbjct: 497 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFD 555

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K  V VY LI   T++E + +R   K ++      
Sbjct: 556 PSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 610

Query: 197 ALK 199
             K
Sbjct: 611 EKK 613


>gi|68486386|ref|XP_712928.1| hypothetical protein CaO19.4502 [Candida albicans SC5314]
 gi|68486451|ref|XP_712896.1| hypothetical protein CaO19.11978 [Candida albicans SC5314]
 gi|46434315|gb|EAK93728.1| hypothetical protein CaO19.11978 [Candida albicans SC5314]
 gi|46434350|gb|EAK93762.1| hypothetical protein CaO19.4502 [Candida albicans SC5314]
          Length = 1915

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            +K +  I+E       + +  F                       ++++N +  I +L  
Sbjct: 1695 LKDMLDIVENELLRKYLPSVTFMR--------LDGSTDPRDRQSIVRKFNEDPSIDVLLL 1746

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI ++
Sbjct: 1747 TTKVGGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKD 1800

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K  I   ++N
Sbjct: 1801 TLEEKIMGLQKFKMNIASTIVN 1822


>gi|115643432|ref|XP_001197308.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
 gi|115663707|ref|XP_001195839.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
          Length = 1496

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEA-----FNSAS-KTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +        + +   ++  ++ N    +   +     H    
Sbjct: 1070 LYRHMQTKGIMLTDGSEKDKKGRGGTKALTNTIMQLRKICNHPFMFRHIEESFSEHLGVT 1129

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       I++     + +  L+  F          
Sbjct: 1130 GGIISGPDLYRVGGKFELLDRILPKLKALGHRILLFCQMTTLMTILEDFFVYRGFKYLRL 1189

Query: 91   --GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  D     +Q +NE   P         + G GLNLQ   + ++ F   W+  +   
Sbjct: 1190 DGTTKADDRGILLQTFNEANCPYFIFMLSTRAGGLGLNLQT-ADTVILFDSDWNPHQ--- 1245

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G    V V  L+   +++E +L   R K  +   ++ A
Sbjct: 1246 --DLQAQDRAHRIGQVNEVRVLRLMTVQSVEEKILAAARWKMNMDSKIIQA 1294


>gi|302143565|emb|CBI22318.3| unnamed protein product [Vitis vinifera]
          Length = 1477

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            +L  +   + ++        +  L +        +      V  + +     +IE   + 
Sbjct: 1093 DLLHENNYKEVDYSGKMVLLLDILTMC------ADVGDKALVFSQSLS-TLDLIEYYLSK 1145

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWNEG---KIPLLFAHPASCGHGLNL 125
                                 GRT   +    ++ +N+    ++        +   G+NL
Sbjct: 1146 LSRQGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINL 1205

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                N ++     W+        +   + R  + G  + VF Y L+A  T++E + +R  
Sbjct: 1206 HS-ANRVIIVDGSWNPT-----YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1259

Query: 186  TKSTIQDLLLNAL-------KKETIHV 205
            TK  +   +++         K+E +H+
Sbjct: 1260 TKEGLAARVVDRQQVHRTISKEEMLHL 1286


>gi|225465567|ref|XP_002263799.1| PREDICTED: similar to SNF2 domain-containing protein, putative,
            expressed [Vitis vinifera]
          Length = 1505

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            +L  +   + ++        +  L +        +      V  + +     +IE   + 
Sbjct: 1121 DLLHENNYKEVDYSGKMVLLLDILTMC------ADVGDKALVFSQSLS-TLDLIEYYLSK 1173

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWNEG---KIPLLFAHPASCGHGLNL 125
                                 GRT   +    ++ +N+    ++        +   G+NL
Sbjct: 1174 LSRQGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINL 1233

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                N ++     W+        +   + R  + G  + VF Y L+A  T++E + +R  
Sbjct: 1234 HS-ANRVIIVDGSWNPT-----YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1287

Query: 186  TKSTIQDLLLNAL-------KKETIHV 205
            TK  +   +++         K+E +H+
Sbjct: 1288 TKEGLAARVVDRQQVHRTISKEEMLHL 1314


>gi|168035589|ref|XP_001770292.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162678509|gb|EDQ64967.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1031

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 35/222 (15%)

Query: 7   FQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYY--------DEEKHWKEV 51
            Q++ Y  L  ++++A N+        +  ++  +  N    +                 
Sbjct: 406 LQKQYYRALLQKDMDAINTGGERKRLLNIAMQLRKCCNHPYLFEGAEPGPPYTTGEHLVE 465

Query: 52  HDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
              K+  L+ ++ K       +++       L  L+                        
Sbjct: 466 TAGKMVLLDKLLPKLKQRQSRVLIFSQMTRLLDILEDYCQFRSYQYCRIDGNTSGDDRES 525

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I ++N              + G G+NL    +I++ +   W+ +     ++     R  
Sbjct: 526 SIDQFNAPNSEKFCFLLSTRAGGLGINL-ATADIVILYDSDWNPQ-----VDLQAQDRAH 579

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 580 RIGQKKEVQVFRFCTEFTIEEKVIERAYKKLALDALVIQQGR 621


>gi|324505729|gb|ADY42457.1| DNA repair and recombination protein RAD54B [Ascaris suum]
          Length = 746

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 50/220 (22%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKE-----------------------------VHDEKI 56
            +      +L N      +    K                              V   K+
Sbjct: 485 LAIIDMLRKLCNHPSILYQSLTSKHGAFNSCESTLNATVLRAFPSSFEPNCSTIVDSGKL 544

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
                ++   +     ++V  +F   L  L +                   +    + E+
Sbjct: 545 SVFVKMMVSLRETNEKVVVVSNFTKTLDMLSEVCKGIFCTVTRLDGSVVPHRRMQLVDEF 604

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N   +P  +      + G GLNL  G + LV F   W+        +   + R  + G K
Sbjct: 605 NTSSLPNHVFLLSTKAGGVGLNL-IGASRLVLFDSDWNPA-----FDVQAMARIWRDGQK 658

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
               +Y L+   TIDE +LQR   KS +  ++ L++L + 
Sbjct: 659 MPCHIYRLVTAGTIDEKILQRQVMKSGLGTVVELDSLNER 698


>gi|320587503|gb|EFW99983.1| helicase swr1 [Grosmannia clavigera kw1407]
          Length = 1751

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 35/181 (19%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ +        ++       L  L++ 
Sbjct: 1408 KRLLQYDCG----------------KLQALDRLLRRLQAGGHRALIFTQMTKVLDILEQF 1451

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1452 LNIHGHKYLRLDGATKIEQRQILTDRFNHDSRILCFILSTRSGGLGINLT-GADTVIFYD 1510

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y L++++TI+  +L++   K  + D+++ 
Sbjct: 1511 QDWNPA-----MDKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQ 1565

Query: 197  A 197
             
Sbjct: 1566 E 1566


>gi|301092506|ref|XP_002997108.1| chromatin structure-remodeling complex subunit snf21-like protein
           [Phytophthora infestans T30-4]
 gi|262111604|gb|EEY69656.1| chromatin structure-remodeling complex subunit snf21-like protein
           [Phytophthora infestans T30-4]
          Length = 1309

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 66/189 (34%), Gaps = 24/189 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLA 82
            ++  ++ N    +    +  +    +      ++++           +++       + 
Sbjct: 777 LMQLRKVCNHPYLFQTNGYQIDFDIVRSSGKFELLDRMLPKLKAAGHRVLMFSQMTQLMH 836

Query: 83  RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            L+  F              + D+    +  +N    P  +      + G GLNL    +
Sbjct: 837 VLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNASDSPFFIFLLSTRAGGLGLNL-ATAD 895

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ F   W+       ++     R  + G K  V V+ L+  + ++E +L R   K  +
Sbjct: 896 TVIIFDSDWNPA-----MDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNM 950

Query: 191 QDLLLNALK 199
            +L++ A K
Sbjct: 951 NNLVVEAGK 959


>gi|242057381|ref|XP_002457836.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
 gi|241929811|gb|EES02956.1| hypothetical protein SORBIDRAFT_03g014780 [Sorghum bicolor]
          Length = 1070

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N+        +  ++  +  N    +                
Sbjct: 432 QMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 491

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                       
Sbjct: 492 ENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 551

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N       +      + G G+NL    +++V +   W+ +      +     R 
Sbjct: 552 ASIEAFNRPGSEKFVFLLSTRAGGLGINL-ATADVVVLYDSDWNPQA-----DLQAQDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 606 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 648


>gi|221125834|ref|XP_002164775.1| PREDICTED: similar to TBP-associated factor 170, partial [Hydra
           magnipapillata]
          Length = 460

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 82/255 (32%), Gaps = 66/255 (25%)

Query: 1   MKQYHKFQR-------ELYCDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWK 49
           +K Y  F +       +   D+  ++IE    A +         ++ N         H +
Sbjct: 139 VKLYEDFSQSQAKKTIDGAVDISSKSIEVKQEAGHIFQALQYLRKVCNHPSLVMTPSHPE 198

Query: 50  EVH-----------------------------------DEKIKALEVIIEKANAAPIIVA 74
                                                 +  +   + +    +    ++ 
Sbjct: 199 YSSVCSYLVENKSSLNDIQHSSKLLALKQLLLDCGIGVENNVNLTDELHPVVSQHRALIF 258

Query: 75  YHFNSDLARLQKAFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           +   S L  ++    +                 ++    +Q +N +  I +L       G
Sbjct: 259 FQLKSMLNIVENDLFKQHLPSITYLRLDGSVPANQRHNIVQMFNNDPSIDVLLLTTHVGG 318

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL  G + ++F    W+      M +   + R  + G K+ V VY LIA++T++E +
Sbjct: 319 LGLNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLIARSTLEEKI 372

Query: 181 LQRLRTKSTIQDLLL 195
           +   + K  I + ++
Sbjct: 373 MGLQKFKLNIANTVI 387


>gi|194382982|dbj|BAG59047.1| unnamed protein product [Homo sapiens]
          Length = 960

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 578 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 637

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 638 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 697

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 698 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 753

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 754 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 802


>gi|154273569|ref|XP_001537636.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415244|gb|EDN10597.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 952

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 72/199 (36%), Gaps = 31/199 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
            ++  +       Y +    + V+             K++ LE+++ K       +++  
Sbjct: 481 LMQLRKCLCHPFIYSKAIEERTVNAALSHRNLVEASSKLQLLEMLLPKLQERGHRVLIFS 540

Query: 76  HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
            F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 541 QFLDNLDVMEDFLDGLGLLHRRLDGSMTSLQKQKQIDEFNVPGSPYFAFLLSTRSGGVGI 600

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + +V     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++Q 
Sbjct: 601 NL-ATADTVVIMDPDFNPHQ-----DIQALSRAHRIGQRKKVLVFQLVTKGSAEEKIMQM 654

Query: 184 LRTKSTIQDLLLNALKKET 202
            + K  +  +L+  +  E 
Sbjct: 655 GKKKMALDQVLIEHMDVEG 673


>gi|145479813|ref|XP_001425929.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393001|emb|CAK58531.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1299

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 31/221 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------D 53
           ++ Y K +     D Q +     N  +  +    + N    +  ++ +            
Sbjct: 666 LRNYEKLK---VLD-QKKGASKANLLNILMSLRLVCNHPYLFTYKREFPNEDIEEMINQS 721

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+K ++ II +       +++   F   L  +Q          +              I
Sbjct: 722 NKLKFVDRIIPRLLEMQHKMLIFSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRII 781

Query: 102 QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N   GK  +      + G G+NL    + ++F    ++        +   ++R  + 
Sbjct: 782 DSFNNSTGKSKIFLLSTRAGGLGINLTS-ADTIIFTDSDFNP-----YRDLQAISRAHRM 835

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G    V V+ L+++ T +E ++Q    K  ++++++N + K
Sbjct: 836 GQTNKVKVFRLVSKYTAEERIIQIATKKLLLEEIIINPINK 876


>gi|21112521|gb|AAM40750.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574424|gb|AAY49834.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 1065

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 35/222 (15%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKI 56
             Y    R     +         + S   +  Q+    +   +++           H  K+
Sbjct: 830  LYAAAARRFRETVDSGEGGDTAALSLLHQLRQICANPLAAADDRSEFLSLDEHLRHSPKL 889

Query: 57   KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------------KDP 98
              L   +++       +IV   F      +Q+A     +                     
Sbjct: 890  AWLIEKLQEIQATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDSRQ 949

Query: 99   CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  +       ++     + G G+N+Q   N ++ F+  W+  +     E     R  
Sbjct: 950  IIIDAFQAKPDFGVIVLSTTAVGFGVNIQA-ANHVIHFTRPWNPAK-----EDQATDRAY 1003

Query: 158  QAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
            + G ++ VFVYY         + +E V +RL TK  + + +L
Sbjct: 1004 RIGQEKEVFVYYPTVLGDGFESFEERVAKRLATKRKLSNDML 1045


>gi|221117267|ref|XP_002154001.1| PREDICTED: similar to yeast Swi2/Snf2-Like family member (ssl-1),
            partial [Hydra magnipapillata]
          Length = 2164

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 11/169 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + +Q   G +    +     +   KI    V+I       + V   F +    +     
Sbjct: 1257 TRLVQYDCGKLQALND----LLRHLKIGKHRVLIFTQMTKMLDVLERFLNYHGYIYLRLD 1312

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +++    ++ +N + KI +      S G G+NL  G + +VF+   W+       +
Sbjct: 1313 GTTKVEQRQILMERFNQDNKIFIFILSTRSGGLGINLT-GADTVVFYDSDWNPT-----M 1366

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G  R V +Y LI++ T++E +L++ + K  + ++ +  
Sbjct: 1367 DAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKAQQKRLLGNIAIEG 1415


>gi|195389136|ref|XP_002053233.1| GJ23773 [Drosophila virilis]
 gi|194151319|gb|EDW66753.1| GJ23773 [Drosophila virilis]
          Length = 1952

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 52/246 (21%)

Query: 1    MKQYHKF----QRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--- 51
            ++ Y  F     ++    L          +          + N       +   +     
Sbjct: 1643 LRLYEDFSNKHLKDCLDKLDDTENLGTKTHIFQALRYLQNVCNHPKLVLRQSGDELTNVA 1702

Query: 52   --------------HDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLARLQKA- 87
                          H  K+ AL+ ++            +    ++     + L  ++   
Sbjct: 1703 AQLALSNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHDL 1762

Query: 88   ---FPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                    T  +             +  +N +  I +L       G GLNL  G + ++F
Sbjct: 1763 LRKHLPSVTYLRLDGSVPASLRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIF 1821

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                W+      M +   + R  + G K+ V VY LI +N+++E ++   + K    + +
Sbjct: 1822 VEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKILTANTV 1876

Query: 195  LNALKK 200
            ++A   
Sbjct: 1877 VSADNA 1882


>gi|206600048|ref|YP_002242122.1| gp65 [Mycobacterium phage Konstantine]
 gi|206287136|gb|ACI12481.1| gp65 [Mycobacterium phage Konstantine]
          Length = 685

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 26/219 (11%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVY------YDEEKHWKEVHDE 54
           KQY + +RE   ++  E  I      ++  +C Q+AN  +         + K        
Sbjct: 433 KQYREIEREALINIGSEDEITVNGVLAEMTRCKQIANSCLQADGFNAMGDVKVRPIFPSN 492

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ 102
           K   +   + +   N    IVA  F   L  L             +       +     +
Sbjct: 493 KADWIYDFLSERISNGTKTIVASQFTGFLNVLSEELKKKGVGHYLYTGATQEPERKRIRK 552

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+       ++  +  S G  L L    + ++     W  ++ +Q+ +R       +   
Sbjct: 553 EFQSESGEMVVLLNTKSGGVSLTL-DLADDVIIVDQTWIPDDQEQVEDR-----AHRVSR 606

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V ++ L +  TIDE +      +      +L   + 
Sbjct: 607 NHNVTIWNLASLGTIDEDIAVLNNERGEAISSILEKQRG 645


>gi|74209142|dbj|BAE24963.1| unnamed protein product [Mus musculus]
          Length = 1733

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEERILEDFRKAHSS 766

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 937


>gi|123424079|ref|XP_001306506.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121888084|gb|EAX93576.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1366

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 71/244 (29%), Gaps = 54/244 (22%)

Query: 2   KQYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-----------YDEEK 46
           K Y       +  L   L   +I + NS +   +  ++ N               +  + 
Sbjct: 491 KIYKALISENREVLMKKLTKNSIPSLNSLA--TELRKVCNHPYLIKGAEDSILEEFQNKF 548

Query: 47  HWKEVHDEKIKALEVIIEK--------------------ANAAPIIVAYHFNSDLARLQK 86
               +  +K      I  +                         +++   +   L  L+ 
Sbjct: 549 DKNSIKSDKNLTKSDIEIEAMINCSGKLILIDKLLPKLKQKNEKVLIFSQWTHILDILED 608

Query: 87  AFPQGRTLDK----------DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +              I  + +     +      + G G+NL    + ++ F
Sbjct: 609 YLRYISFNYERLDGSVKPSDRQTAIDRFKDNANSFVFLISTKAGGVGINLTT-ASTVILF 667

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+ +      +     R  + G  + V VY L+ +NT +  +++    K  ++ ++ 
Sbjct: 668 DSDWNPQN-----DLQAEARCHRIGQTKEVKVYRLVTRNTYESKMVEVSCKKMFLEHVIF 722

Query: 196 NALK 199
           + L 
Sbjct: 723 DGLN 726


>gi|193784122|dbj|BAG53666.1| unnamed protein product [Homo sapiens]
          Length = 1056

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             R    F       +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 367 WVRNISHFHGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 425

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 426 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 480

Query: 198 LK 199
           L 
Sbjct: 481 LN 482


>gi|210075893|ref|XP_503715.2| YALI0E09012p [Yarrowia lipolytica]
 gi|199426896|emb|CAG79304.2| YALI0E09012p [Yarrowia lipolytica]
          Length = 1457

 Score = 88.3 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+  L+ ++ +       ++V +     +   ++     +              +   
Sbjct: 1245 SGKLAKLDELLAELKAGGHRVLVYFQMTKMMDLAEEYLTFKQYNYCRLDGSSKLSDRRDL 1304

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  + ++ +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1305 VNDWQTKPELFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1358

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q+++++ 
Sbjct: 1359 GQTRQVTVYRLLVKGTIEERMRDRAKQKEHVQNVVMSG 1396


>gi|302828188|ref|XP_002945661.1| hypothetical protein VOLCADRAFT_115608 [Volvox carteri f.
           nagariensis]
 gi|300268476|gb|EFJ52656.1| hypothetical protein VOLCADRAFT_115608 [Volvox carteri f.
           nagariensis]
          Length = 935

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 70  PIIVAYHFNSDLAR---------LQKAFPQGRTLDK-DPCTIQEWNEGKIP---LLFAHP 116
             +V   F   L           ++     G T  K     ++++   +     +     
Sbjct: 781 KSVVFSQFTGMLNLVGRALEAAGMRYVRLDGCTPAKARADMVRDFARREPDSPVVFLVSL 840

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + +     WW+       +E   + R  + G  R V V+  +A +TI
Sbjct: 841 KAGGVGMNLTA-ASHVHLLDPWWNPS-----VEEQAMDRVHRLGQTRDVEVFRYVAADTI 894

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           +E +L     K  + +   +    E
Sbjct: 895 EERMLLLQERKRELANAAFDRRSAE 919


>gi|299751086|ref|XP_001830045.2| transcription regulator [Coprinopsis cinerea okayama7#130]
 gi|298409213|gb|EAU91710.2| transcription regulator [Coprinopsis cinerea okayama7#130]
          Length = 1441

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 30/207 (14%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEK--ANAAP 70
            +  +  ++  + AN    +D  +   +          +   K+  L+ ++ +   +   
Sbjct: 649 ISLLNIAMELKKAANHPYLFDGAEVRTDNNEETLKGLVMSSGKMVLLDKLLARLRQDGHR 708

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPAS 118
           +++       L  L           +              I  +N    P         +
Sbjct: 709 VLIFSQMVRMLDILSDYMTLRGYQHQRLDGMVGSDLRKKAIAHFNAENSPDFAFLLSTRA 768

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ F   W+ +      +   + R  + G K  V VY  ++++T++E
Sbjct: 769 GGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARAHRIGQKSHVSVYRFVSKDTMEE 822

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            VL+R + K  ++  ++N +     H+
Sbjct: 823 DVLERAKRKMVLEYAIINQMDTTQAHL 849


>gi|297829170|ref|XP_002882467.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328307|gb|EFH58726.1| hypothetical protein ARALYDRAFT_477943 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1055

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++EA N+        +  ++  +  N    +   E        D  I
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
                ++             + +++       L  L+        L           +  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    ++ I+E V++R   K  +  L++   +
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGR 643


>gi|303279062|ref|XP_003058824.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459984|gb|EEH57279.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 828

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 19/147 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE---GKI 109
           +     A  +V   F + L   +                  + +    I+ +        
Sbjct: 683 LGGEPGAKAVVFSQFVAFLDIARDACAAAGFKTCRITGAVPVAERERVIRSFQSNASDAP 742

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++F    + G G+NL    + +     WW+       +E   + R  + G  + V V  
Sbjct: 743 DVVFVSLKAGGVGINLTA-ASKVYMLDPWWNPA-----VEEQAMDRVHRLGQTKDVTVVR 796

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
             A +TI+E +L+  R K  +      
Sbjct: 797 FAATDTIEEKMLELQRRKRELARAAFE 823


>gi|157310977|ref|YP_001468973.1| putative helicase [Corynebacterium phage P1201]
 gi|95832125|gb|ABF57525.1| putative helicase [Corynebacterium phage P1201]
          Length = 656

 Score = 88.3 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 78/229 (34%), Gaps = 36/229 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKE-------VH 52
           K Y + Q +    L   ++ A    +   +  Q     G +   E+    E       + 
Sbjct: 422 KAYAEMQEDAIAYLDSGSVVANGQLAVMTRLKQFAGCYGTIETKEDADGFEVDAFKPALP 481

Query: 53  DEKIKALEVIIEK----------ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
             K   L   + +            A  ++VA  F S +   Q A  +          G 
Sbjct: 482 SNKFTWLLEFLSELGIDKEGDSGPQARKVVVASQFTSVINIFQAALEKRGIKTLKVAGGV 541

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +  +     + +  +    +   +  + G  L L    + +V     +  ++ +Q+ +R+
Sbjct: 542 SAGERKRAAELFQTDHGPQVFLLNTNAGGVALTL-DRADDIVILDETFIPDDQEQVEDRV 600

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 +      V ++YL ++ TI+E + +    +  IQ  +L+  + 
Sbjct: 601 -----HRVSRNHNVTIHYLRSKGTIEESIARTTFGRDQIQKQVLDGERG 644


>gi|315043989|ref|XP_003171370.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311343713|gb|EFR02916.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 1707

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++          ++      
Sbjct: 1351 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRTLQAGGHRALIFTQMTK 1394

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1395 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1453

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1454 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1508

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1509 MLDDVVIQEGE 1519


>gi|145539934|ref|XP_001455657.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423465|emb|CAK88260.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1292

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 80/221 (36%), Gaps = 31/221 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------D 53
           ++ Y K +     D Q +     N  +  +    + N    +  ++ +            
Sbjct: 659 LRNYEKLK---VLD-QKKGASKANLLNILMSLRLVCNHPYLFTYKREFPNEDIDEMINQS 714

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+K ++ II +       +++   F   L  +Q          +              I
Sbjct: 715 NKLKFVDRIIPRLLEMQHKMLIFSQFTMMLDLMQHYLQLRGYSYERLDGTTSIMDRQRII 774

Query: 102 QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N   GK  +      + G G+NL    + ++F    ++        +   ++R  + 
Sbjct: 775 DSFNNSTGKSKIFLLSTRAGGLGINLTS-ADTIIFTDSDFNP-----YRDLQAISRAHRM 828

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G    V V+ L+++ T +E ++Q    K  ++++++N + K
Sbjct: 829 GQTNKVKVFRLVSKYTAEERIIQIATKKLLLEEIIINPINK 869


>gi|121700957|ref|XP_001268743.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
           NRRL 1]
 gi|119396886|gb|EAW07317.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
           NRRL 1]
          Length = 976

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N       +                      +H+      KI+ 
Sbjct: 565 NSENALHLITILKKLCNSPSLLSPKNADETPSETIAALLSSLPPNLLRHFSPSSSAKIRV 624

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++     + +  I++  ++ S L  L                     K    ++++N
Sbjct: 625 LDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDFN 684

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                          + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 685 RLPADLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDGQK 738

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 739 RHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 772


>gi|66801013|ref|XP_629432.1| myb domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462823|gb|EAL61023.1| myb domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1221

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 80/225 (35%), Gaps = 38/225 (16%)

Query: 7   FQRELYCDLQGENIEAFNSASK-----------TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            Q+E Y  L  ++++A    +K            ++  +  N    +D  +       E 
Sbjct: 516 MQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICMQLRKACNHPYLFDGAEEEPYTTGEH 575

Query: 56  I---------KALEVIIEKANAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK--------- 96
           +             +   K   + +++    +  L  L+     +G    +         
Sbjct: 576 LIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIV 635

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +I+ +N+    L        + G G+ L    +I++ F   W+ +     ++     
Sbjct: 636 RENSIENYNKPGSDLFAFLLTTRAGGLGITL-NTADIVILFDSDWNPQ-----MDLQAQD 689

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  + V VY  + +N+++E ++++   K  +  L++   +
Sbjct: 690 RAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGR 734


>gi|225428788|ref|XP_002282100.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 79/242 (32%), Gaps = 55/242 (22%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------------- 44
           +    +  E ++     +      +L N      +                         
Sbjct: 459 KNVKKVINEEMKQSKILAYITALKKLCNHPKLIYDTVKSGNQGTSGFEDCMRFFPPEMFS 518

Query: 45  ---------EKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
                    E  W E+  +      ++  + +     I++  ++   L    +   + R 
Sbjct: 519 GRSGAWTGGEGIWVELSGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRY 578

Query: 94  LD----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       K    +  +++      +      + G GLNL  GGN LV F   W+ 
Sbjct: 579 PYLRLDGTTSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNL-IGGNRLVLFDPDWNP 637

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  ++    R  + G K+ V++Y  ++  TI+E V QR  +K  +Q  ++   +K+
Sbjct: 638 AN-----DKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVFQRQMSKEGLQ-KVIQQEQKD 691

Query: 202 TI 203
           ++
Sbjct: 692 SL 693


>gi|195387524|ref|XP_002052444.1| GJ21604 [Drosophila virilis]
 gi|194148901|gb|EDW64599.1| GJ21604 [Drosophila virilis]
          Length = 842

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 20/183 (10%)

Query: 34  QLANGAVYYDEEKHWKEV-HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           QL N    YD +     +    K   L+ ++ K  A    +++   F   L  ++     
Sbjct: 629 QLCNKYELYDVKIPDSLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDVVEEYLRI 688

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        + +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 689 RKHGFCRLDGATAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G  R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 748 NP-----YNDKQAEDRCHRMGQSRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSTEK 802

Query: 200 KET 202
            E 
Sbjct: 803 GEV 805


>gi|196010760|ref|XP_002115244.1| hypothetical protein TRIADDRAFT_59226 [Trichoplax adhaerens]
 gi|190582015|gb|EDV22089.1| hypothetical protein TRIADDRAFT_59226 [Trichoplax adhaerens]
          Length = 2314

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +Q   G +   +      +HD K K   V+I       + +   F +    +      
Sbjct: 1329 RLIQYDCGKLQALD----ILLHDLKAKGHRVLIFTQMTKMLDILEKFLNFHGHVYLRLDG 1384

Query: 91   GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +++     + +N   ++        S G G+NL  G + +VF+   W+       ++
Sbjct: 1385 ATPVERRQMLTERFNNDKRVFCFVLSTRSGGLGVNLT-GADTVVFYDSDWNPT-----MD 1438

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-------LKKET 202
                 R  + G  R V +Y LI++ TI+E +L++   K  +  + +         LKK+ 
Sbjct: 1439 AQAQDRCHRIGQTRDVHIYRLISEFTIEENILKKANQKRLLGGVAIEEGNFNTAFLKKDH 1498

Query: 203  IH 204
            I 
Sbjct: 1499 IQ 1500


>gi|50312039|ref|XP_456051.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74689973|sp|Q6CJ38|SWR1_KLULA RecName: Full=Helicase SWR1
 gi|49645187|emb|CAG98759.1| KLLA0F21758p [Kluyveromyces lactis]
          Length = 1572

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 11/177 (6%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               + A      LQ   G +     K  + + + K      +I       + +   F + 
Sbjct: 1293 TKLSVAFPDKSLLQYDCGKLQ----KLAQLLQNLKDNGHRALIFTQMTKVLDILEQFLNF 1348

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               L         ++      + +N + +I +      S G G+NL  G + ++F+   W
Sbjct: 1349 HGYLYMRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLT-GADTVIFYDSDW 1407

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +++    R  + G  R V +Y  ++ +TI+  +L++   K  + ++++ 
Sbjct: 1408 NPA-----MDKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQ 1459


>gi|323448072|gb|EGB03975.1| hypothetical protein AURANDRAFT_55360 [Aureococcus anophagefferens]
          Length = 1291

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F             G    +    +  +N +  I        S G G+NL  G + ++F+
Sbjct: 541 FLCWHGHSYLRLDGGTPPGERQRLMDRFNSDAFIFCFVLSTRSGGLGINLT-GADTVIFY 599

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+       ++   + R  + G  R V +Y LI   T++E +L + R K  ++ + L
Sbjct: 600 DSDWNPA-----MDAQAMDRAHRIGQTRDVHIYRLICIATVEENILLKARQKQKLEFITL 654

Query: 196 NALKKETIHV 205
                ++I +
Sbjct: 655 TEGNFDSIQL 664


>gi|321253974|ref|XP_003192917.1| DNA repair protein [Cryptococcus gattii WM276]
 gi|317459386|gb|ADV21130.1| DNA repair protein, putative [Cryptococcus gattii WM276]
          Length = 993

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEGKI 109
           +H       E ++  +N    +        L R       G T  K     +  +N+ K 
Sbjct: 612 LHSIYQSTEEKVVVVSNWTSTLDLIQGLCKLKRYNYLRLDGSTPPKQRQELVDRFNKDKE 671

Query: 110 P----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  GG+ L+ F   W+        +   + R  + G KR V
Sbjct: 672 RQGSFVFLLSAKAGGVGLNL-IGGSRLILFDSDWNPST-----DLQAMARIHRDGQKRPV 725

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++Y L+  N IDE + QR  TK+ + D +++
Sbjct: 726 YIYRLLTTNAIDEKIYQRQITKTGLSDQMMD 756


>gi|156843751|ref|XP_001644941.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115595|gb|EDO17083.1| hypothetical protein Kpol_1025p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1507

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
           K Y           +G +    N  ++  K    +N    +D  +               
Sbjct: 659 KNYSAL----TAGTKGGHFSLLNVMTELKK---ASNHPYLFDYAEERVLQKFGDGNMSRE 711

Query: 51  -------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
                  +   K+  L+ ++   K +   +++       L  +                 
Sbjct: 712 NILRGLIMSSGKMVLLDQLLTRLKRDGHRVLIFSQMVRMLDIMGDYLSIKGINFQRLDGT 771

Query: 92  RTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +    I  +N       +      + G G+NL    + ++ F   W+ +      +
Sbjct: 772 VPSAQRRIAIDHFNAPDSNDDVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----D 825

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 826 LQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 872


>gi|157953853|ref|YP_001498744.1| hypothetical protein AR158_C663L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068501|gb|ABU44208.1| hypothetical protein AR158_C663L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 458

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 24/218 (11%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDE 54
           + Y +        L+     G+         + ++  Q          +   +  E +  
Sbjct: 225 ELYDELVENGRLLLKAYNAYGDGEGRMKLLEQLMRMRQCVTNPQLLFMKSDDERWEGNYT 284

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
           K+  L+  I+       I+  ++  ++  ++                   ++    ++ +
Sbjct: 285 KLNMLKREIQNNPIEKTIIFCNWIHEMISIENMLHSIGYDSVMLNGKTPNEQRDINVKRF 344

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N +  I        S G GLNLQ   + +   SL W+        E   + R  + G  +
Sbjct: 345 NEDDNINFFIVQIESGGIGLNLQ-VASRVFINSLSWNATT-----EIQAIARAHRIGQTK 398

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V V  LI  NT DE VL   + K  I   + +  + E
Sbjct: 399 DVTVKRLIINNTFDEYVLNLQQKKLEIASEIFDDKRIE 436


>gi|196014691|ref|XP_002117204.1| hypothetical protein TRIADDRAFT_61248 [Trichoplax adhaerens]
 gi|190580169|gb|EDV20254.1| hypothetical protein TRIADDRAFT_61248 [Trichoplax adhaerens]
          Length = 1395

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 37   NGAVYYDEEKHWKEV-HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--- 90
            NG  Y         V    K++ L+V+++K       +++       +  L++       
Sbjct: 1018 NGWSYMAIPDKKSLVTDSGKLRILDVLLKKLKFEGHRVLIYSQMTRMIDLLEEYMGFRKH 1077

Query: 91   --------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  D+        ++  I        + G G+NL    + ++F+   W+  
Sbjct: 1078 IYMRLDGSSKISDRRDMVADFQSKSDIFAFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT 1136

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +++  + R  + G  + V VY L+   TI+  +L+R + KS IQ ++++ 
Sbjct: 1137 -----VDQQAMDRAHRLGQTKQVTVYRLVTSGTIENRILKRAQEKSEIQKMVISG 1186


>gi|77747807|ref|NP_636826.2| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|77761256|ref|YP_243854.2| helicase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 641

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 35/222 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKI 56
            Y    R     +         + S   +  Q+    +   +++           H  K+
Sbjct: 406 LYAAAARRFRETVDSGEGGDTAALSLLHQLRQICANPLAAADDRSEFLSLDEHLRHSPKL 465

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------------KDP 98
             L   +++       +IV   F      +Q+A     +                     
Sbjct: 466 AWLIEKLQEIQATGEKVIVFTEFRDIQRLIQRAIASRLSYQASIVNGSTSVEAGADDSRQ 525

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +       ++     + G G+N+Q   N ++ F+  W+  +     E     R  
Sbjct: 526 IIIDAFQAKPDFGVIVLSTTAVGFGVNIQA-ANHVIHFTRPWNPAK-----EDQATDRAY 579

Query: 158 QAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + G ++ VFVYY         + +E V +RL TK  + + +L
Sbjct: 580 RIGQEKEVFVYYPTVLGDGFESFEERVAKRLATKRKLSNDML 621


>gi|83774068|dbj|BAE64193.1| unnamed protein product [Aspergillus oryzae]
          Length = 1471

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 1   MKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           ++ Y     + Y  L      +  +  +  ++  + +N    +   +             
Sbjct: 647 LEYYKNILTKNYAALNDGAKGQKQSLLNIMMELKKASNHPFMFPNAEAKILDGSTRREDV 706

Query: 52  ------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-QKAFPQGRTLDK------ 96
                    K+  L+ ++ K   +   +++       L  L +    +G T  +      
Sbjct: 707 LRAMITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDLLGEYMEFRGYTYQRLDGTIP 766

Query: 97  ---DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I+ +N              + G G+NL    + +V F   W+ +      +  
Sbjct: 767 AASRRLAIEHYNAPGSSDFAFILSTRAGGLGINLMT-ADTVVLFDSDWNPQA-----DLQ 820

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G  R V VY L++++T++E V++R R K  +
Sbjct: 821 AMARAHRIGQTRPVSVYRLVSKDTVEEEVIERARNKLLL 859


>gi|332035338|gb|EGI71840.1| Snf2 family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 155

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 68  AAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              II+   F S L  + +                 +    I E+  GK  +      + 
Sbjct: 5   GRKIIIFSQFTSALDLIAQRLEEININFSMLTGQTRQRDKVIDEFTSGKTSVFLISLKAG 64

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLNL    + ++ F  WW+       +E+    R  + G    VFVY LI  N+I++ 
Sbjct: 65  GTGLNLTQ-ADTVIHFDPWWNPA-----VEKQATDRAYRIGQTNPVFVYKLIMSNSIEQK 118

Query: 180 VLQRLRTKSTIQDLLL 195
           V +  + K  + D L 
Sbjct: 119 VFKMQQDKQALVDALF 134


>gi|326429518|gb|EGD75088.1| Rad54b protein [Salpingoeca sp. ATCC 50818]
          Length = 1070

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 29/197 (14%)

Query: 5   HKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKALEV 61
            +  R     L   E++            LQ                +  +  K+ +   
Sbjct: 683 EELGRPALSTLDDVEDVSLCGKMQLLSHMLQ----HWRAHPANERVLIVSNSTKVLSRVQ 738

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASC 119
            + +  A P +                       K    +  +N       +      + 
Sbjct: 739 ALCEQCAYPFLR--------------LQGNTPTHKRLELVNRFNSRVRDDFVFLMSSKAG 784

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GLN+  G + L+ +   W+        +   + R  + G KR V+VY  +   TI+E 
Sbjct: 785 GVGLNI-VGASRLILYDTDWNPAN-----DLQAMARVWRDGQKRHVYVYRFLTTGTIEEK 838

Query: 180 VLQRLRTKSTIQDLLLN 196
           + QR   K  +   +++
Sbjct: 839 IYQRQVHKQGLSGSVVD 855


>gi|256083470|ref|XP_002577966.1| helicase [Schistosoma mansoni]
 gi|238663311|emb|CAZ34204.1| helicase mot1, putative [Schistosoma mansoni]
          Length = 2340

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++    ++   +  I L+    A  G GLNL  G + ++F    W+  +     +  
Sbjct: 2180 PVNERHNRVVKFNQDPSIDLMLLTTAVGGLGLNLT-GADTVIFVEHDWNPSK-----DLQ 2233

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + R  + G +R V VY LI +++I+E ++     K  + + +L A  K    +
Sbjct: 2234 AMDRAHRIGQRRTVNVYRLITEDSIEEQIMNLQAFKLHLANTVLTADNKSLNEM 2287


>gi|145614554|ref|XP_362144.2| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
 gi|145021462|gb|EDK05591.1| hypothetical protein MGG_04589 [Magnaporthe oryzae 70-15]
          Length = 1654

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 35/226 (15%)

Query: 1   MKQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           ++ Y       Y  L         +  +  ++  +++N    +   +             
Sbjct: 713 LEYYKNILTRNYAALSDASGGHKASLLNIMMELKKVSNHPYMFQGVEERVLAGSTRREDS 772

Query: 51  -----VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++ K   +   +++       L  L           +       
Sbjct: 773 IKGLIKSSGKMMLLDQLLAKLKKDNHRVLIFSQMVKMLDILGDYLRVRGYQYQRLDGTIP 832

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  I  +N              + G G+NL    + ++ +   W+ +      +  
Sbjct: 833 AGPRRMAINHFNAPDSEDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DLQ 886

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R  + G KR V VY L+A+ T++E V+ R R K  ++ L + A
Sbjct: 887 AMARAHRIGQKRPVNVYRLVAKQTVEEEVVNRARNKLFLEYLTIQA 932


>gi|19115158|ref|NP_594246.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|74675924|sp|O13762|YF2C_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C17A2.12
 gi|2414584|emb|CAB16565.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 897

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            K     ++  + +    +V++    +  R  +         +        N+  + ++ 
Sbjct: 738 SKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVML 797

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   GLNL    N ++    +++       IE   + R  + G ++ V VY  I +
Sbjct: 798 VSLKAGSVGLNLT-IANHVILQEPFYNPS-----IEDQAIDRVHRLGQQKPVTVYRFITK 851

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +TI+E ++   R K  +    L++ +   +
Sbjct: 852 DTIEERIVSVQRKKRQLVKEALDSNENNPL 881


>gi|62738897|pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           Eukaryotic Rad54
          Length = 644

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 33  LQLANGAVYYDEE---------------------KHWKEVHDEKIKALEVIIEKA---NA 68
            +L N      E+                     K  +     K+  L+ I+       +
Sbjct: 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 416

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHP 116
             +++  ++   L   +K                ++ K    ++ +N    P  +     
Sbjct: 417 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL  G N LV F   W+        +   + R  + G K+  ++Y L++  TI
Sbjct: 477 KAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRDGQKKTCYIYRLLSTGTI 530

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +E +LQR   K  +   +++ 
Sbjct: 531 EEKILQRQAHKKALSSCVVDE 551


>gi|148886758|ref|NP_001092144.1| similar to SNF2/RAD54 family protein [Rattus norvegicus]
 gi|62667178|ref|XP_228546.3| PREDICTED: excision repair cross-complementing rodent repair
           deficiency complementation group 6 - like [Rattus
           norvegicus]
 gi|109512082|ref|XP_001070442.1| PREDICTED: excision repair cross-complementing rodent repair
           deficiency complementation group 6 - like [Rattus
           norvegicus]
 gi|149042163|gb|EDL95870.1| similar to SNF2/RAD54 family protein (predicted) [Rattus
           norvegicus]
          Length = 1230

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 70/245 (28%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------------EE 45
           + Y KF       ++   +E  +  ++     +L +                      E+
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACHLLNLGTVTFSAED 436

Query: 46  KHWKEV-----------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
           ++ +E                     K+  L  ++E  +      +V       L  +++
Sbjct: 437 ENEQEDASNMGSIDHLSDNALMQESGKMIFLMALLERLQDEGHQTLVFSQSRQILNIIER 496

Query: 87  AFPQGRTLD-----------KDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                               +    IQ      +  +        G GL L    + +V 
Sbjct: 497 LLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTA-ASRVVI 555

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 556 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 610

Query: 195 LNALK 199
               K
Sbjct: 611 TGDKK 615


>gi|68568746|sp|Q8RWY3|ISW2_ARATH RecName: Full=Putative chromatin-remodeling complex ATPase chain;
           AltName: Full=ISW2-like; AltName: Full=Sucrose
           nonfermenting protein 2 homolog
 gi|6437558|gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
          Length = 1057

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++EA N+        +  ++  +  N    +   E        D  I
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
                ++             + +++       L  L+        L           +  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    ++ I+E V++R   K  +  L++   +
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGR 643


>gi|391640|dbj|BAA03262.1| ORF2 [Gallus gallus]
          Length = 560

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 31/194 (15%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDE-------------KIKALEVIIEKANAAPIIVAYH 76
           ++  +  N           +  + +              +    +I  +     +++   
Sbjct: 1   MELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQ 60

Query: 77  FNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI--PLLFAHPASCGHGLN 124
               L  L +     +   +              +  +N              + G G+N
Sbjct: 61  MVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGIN 120

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + +V F   W+ +      +     R  + G K+ V +Y L+ + +++E +L+R 
Sbjct: 121 L-ASADTVVIFDSDWNPQN-----DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERA 174

Query: 185 RTKSTIQDLLLNAL 198
           + K  +  L++  +
Sbjct: 175 KKKMVLDHLVIQRM 188


>gi|255567695|ref|XP_002524826.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223535886|gb|EEF37546.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 874

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWNEGKIP 110
           ++E+  +A  IV   F S L  +  +  +                +D    +   +    
Sbjct: 715 MVERDGSAKGIVFSQFTSFLDLISYSLHKSGINCVQLVGSMSLPARDNAIKRFSEDPNCK 774

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G  LNL    + +     WW+       +ER    R  + G  + + +   
Sbjct: 775 IFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VERQAQDRIHRIGQYKPIRIVRF 828

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + +NTI+E +LQ    K  + +  L  
Sbjct: 829 VIENTIEERILQLQEKKELVFEGTLGG 855


>gi|46121269|ref|XP_385189.1| hypothetical protein FG05013.1 [Gibberella zeae PH-1]
          Length = 874

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 29/214 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEK 55
            + +R    +L  + I      +   +   + N    +                     K
Sbjct: 579 KERERAEAFELAKKQISHKKLGNPMAQLRLVCNSPHNFYNPWKASTELPVDDSIVTASGK 638

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLD--KDPCTI 101
           +  L+ ++ +       +++   F           ++L   +     G      +     
Sbjct: 639 MLLLDRLLPRLFEGGHKVLIFSQFTTQLDILEDYCAELRGWKVCRIDGSVAQDSRRTQIA 698

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              ++ +  +      + G G+NL    + ++ F   ++ ++     +     R  + G 
Sbjct: 699 DFNSDPEYKIFLLSTRAGGQGINL-ASADTVILFDSDFNPQQ-----DLQAQDRCHRIGQ 752

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R V V+ L  ++T++E +L     K  ++ L++
Sbjct: 753 TRPVVVFRLATKDTVEESLLNSADAKRRLEKLVI 786


>gi|115491909|ref|XP_001210582.1| hypothetical protein ATEG_00496 [Aspergillus terreus NIH2624]
 gi|114197442|gb|EAU39142.1| hypothetical protein ATEG_00496 [Aspergillus terreus NIH2624]
          Length = 894

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 76/217 (35%), Gaps = 30/217 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVH------DEKI 56
            + +R     L    I      +  ++     N     Y+   +   ++         K+
Sbjct: 597 EEIERAKTIKLAK--IAQKKMQNPVMQARLACNSPHNFYWPWGEDPADIDESLVTASGKM 654

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT------------LDKDPCTIQ 102
             L+ ++         I++   F + L  LQ    Q R+             D+      
Sbjct: 655 LLLDRLVSCLLKKEHKILIFSQFKTQLDILQDWATQLRSWNCCRIDGAISQSDRREQIKA 714

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              + K  +      + G G+NL    + ++ +   W+ ++     +     R  + G  
Sbjct: 715 FNTDPKFKIFLLSTRAGGQGINLTA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQT 768

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V VY L  + T+++ +L++  +K  ++ L++   K
Sbjct: 769 KPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGK 805


>gi|73985397|ref|XP_860617.1| PREDICTED: similar to KIAA0809 protein isoform 2 [Canis familiaris]
          Length = 1056

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             R    F       +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 367 WVRNVSYFHGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 425

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 426 SWNP-----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDD 480

Query: 198 LK 199
           L 
Sbjct: 481 LN 482


>gi|328705070|ref|XP_001948023.2| PREDICTED: DNA repair and recombination protein RAD54-like
           [Acyrthosiphon pisum]
          Length = 751

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 45/220 (20%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDE----------------EKHWKEVHDEK---- 55
               +   N+ +      +L        +                   +   H +K    
Sbjct: 422 NDGKVT-SNALAAITLLKKLCAHPDLIIDKIMNGSDGFENSKHLLPPTYIAAHSKKKLMI 480

Query: 56  --------IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
                   +  +  +I+      +++  ++   L   ++                T  K 
Sbjct: 481 ELSSKLMVLDTMLAVIKTTTTDRVVLISNYTQTLELFERLAKLRNYTFVRLDGSMTAKKR 540

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + + N     +     +S   G  L   G N LV F   W+        +   + R 
Sbjct: 541 AKAVDDINSPTSGVFLFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN-----DDQAMARV 595

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G K+  FVY  +A  +I+E ++QR   K  +   +++
Sbjct: 596 WRDGQKKPCFVYRFLATGSIEEKMMQRQAHKKALSSSVVD 635


>gi|297710314|ref|XP_002831842.1| PREDICTED: DNA excision repair protein ERCC-6-like [Pongo abelii]
          Length = 1250

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACGLLNLGTFSAQDGN 436

Query: 42  -----------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K+  L  ++++        +V       L  +++  
Sbjct: 437 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 496

Query: 89  PQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           L +    I          +        G GL L      +V F 
Sbjct: 497 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFD 555

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K  V VY LI   T++E + +R   K ++      
Sbjct: 556 PSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 610

Query: 197 ALK 199
             K
Sbjct: 611 EKK 613


>gi|20259462|gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
          Length = 1055

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++EA N+        +  ++  +  N    +   E        D  I
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
                ++             + +++       L  L+        L           +  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    ++ I+E V++R   K  +  L++   +
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGR 643


>gi|22330875|ref|NP_187291.2| CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding
           / DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
          Length = 1055

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYD--EEKHWKEVHDEKI 56
           + Q++ Y  L  +++EA N+        +  ++  +  N    +   E        D  I
Sbjct: 427 QMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLI 486

Query: 57  KALEVIIEKAN--------AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
                ++             + +++       L  L+        L           +  
Sbjct: 487 TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERD 546

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 547 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 600

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    ++ I+E V++R   K  +  L++   +
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGR 643


>gi|327296738|ref|XP_003233063.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326464369|gb|EGD89822.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 1693

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1337 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQAGGHRALIFTQMTK 1380

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1381 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1439

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1440 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1494

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1495 MLDDVVIQEGE 1505


>gi|83766213|dbj|BAE56356.1| unnamed protein product [Aspergillus oryzae]
          Length = 1026

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 46  KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGR----------T 93
           K+ + +   KI  L  ++   K N    ++   F   +  L+                  
Sbjct: 836 KNNEWMDSGKIDKLCELLKRFKENGDRTLIFSQFTMVMDILEHVLENQHLGFVRLDGRTN 895

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++     +  ++E   IP+      + G G+NL    N +V F   ++ +      +   
Sbjct: 896 VEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIFDSSFNPQ-----EDVQA 949

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  + G  R V V  L+ ++TI+E +    +TK  +   +      E
Sbjct: 950 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAVAGEDAGE 998


>gi|302830326|ref|XP_002946729.1| hypothetical protein VOLCADRAFT_120362 [Volvox carteri f.
           nagariensis]
 gi|300267773|gb|EFJ51955.1| hypothetical protein VOLCADRAFT_120362 [Volvox carteri f.
           nagariensis]
          Length = 1229

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +      +      + ++    +Q +    IP+        G GL L    + ++    
Sbjct: 825 KAMKLSYCRIDGDVASAEERQAHVQRFQNSNIPVFLLTSQVGGLGLTLTA-ADRVIIVDP 883

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            W+     Q ++R       + G  R V VY LI   T++E + +R   K  +  
Sbjct: 884 AWNPSVDDQSVDR-----AYRMGQTRDVVVYRLITCGTVEEKIYRRQVFKGGLSK 933


>gi|302511611|ref|XP_003017757.1| hypothetical protein ARB_04640 [Arthroderma benhamiae CBS 112371]
 gi|291181328|gb|EFE37112.1| hypothetical protein ARB_04640 [Arthroderma benhamiae CBS 112371]
          Length = 1706

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1350 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQAGGHRALIFTQMTK 1393

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1394 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1452

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1453 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1507

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1508 MLDDVVIQEGE 1518


>gi|242764399|ref|XP_002340764.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218723960|gb|EED23377.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1045

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 18/159 (11%)

Query: 51  VHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
           V   K++AL  I+  +A     IV   F   L +++    +            R   ++ 
Sbjct: 804 VPSTKVRALIRILRKEAPEYKFIVFSVFTQMLDKIEPFLKRAKLGYARYDGSMRNDLREA 863

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N     +L     +   GLNL    + +V    +W+       +E   + R  +
Sbjct: 864 SLEKLRNHSNTRILLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHR 917

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 V +Y +  +NT++E +L     K  + +  +  
Sbjct: 918 LNQTIDVKIYKITIKNTVEERILDLQERKRELANATIEG 956



 Score = 37.8 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 1   MKQYHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           ++ Y++ +    R L   + G  ++  ++    ++  Q  N     
Sbjct: 565 VEFYNRLEQRTDRRLSQMMGGSKLDYASALVMLLRLRQACNHPDLV 610


>gi|194228023|ref|XP_001488364.2| PREDICTED: excision repair cross-complementing rodent repair
           deficiency, complementation group 6-like [Equus
           caballus]
          Length = 1230

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 365 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACHLLNLGAVKFSVQD 422

Query: 43  -DEEKHWKEVH-------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
            +E +   +V                K+  L  ++++        +V       L  +++
Sbjct: 423 ENEGEDSSDVDHLDKITDDTLMEESGKMIFLMDLLQRLRDEGHQTLVFSQSRQILNIIER 482

Query: 87  AFPQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             L +    I          +        G GL L      +V 
Sbjct: 483 LLKNRHFKILRIDGTITHLVEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVI 541

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 542 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 596

Query: 195 LNALK 199
               K
Sbjct: 597 TGDKK 601


>gi|167628577|ref|YP_001679076.1| helicase (snf2 family) protein [Heliobacterium modesticaldum Ice1]
 gi|167591317|gb|ABZ83065.1| helicase (snf2 family) protein [Heliobacterium modesticaldum Ice1]
          Length = 537

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 27/219 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           + Y+   + L  + +       ++ S  +   ++ + +           +          
Sbjct: 273 ELYNAVIQYLRGEFRRRKKNRKSTLSLLILLREICSSSFAALGTIEQMGLEELVPLARRI 332

Query: 53  --DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTI 101
             + K   +   +++     +I   +F +                 +  G        T 
Sbjct: 333 RQNAKGHVVTEFLKQNREKVVIFTEYFQTMDYLSLHLQAAGIPVLVYHGGLGRWTRAMTQ 392

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++ +  +P+L     S G G+NLQ+  + ++ + L W+    +Q I R+      + G 
Sbjct: 393 HQFQKSDVPVLI-STESGGEGINLQF-CSQVINYDLPWNPMRVEQRIGRV-----HRLGQ 445

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R V VY L  + TI+E +L+ L  K  +    +  +++
Sbjct: 446 SRDVHVYNLSTRGTIEEQMLRLLSEKIEMFAQTIGPIER 484


>gi|109131186|ref|XP_001092609.1| PREDICTED: DNA excision repair protein ERCC-6-like isoform 2
           [Macaca mulatta]
          Length = 1252

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436

Query: 43  -----DEEKHWKEV-------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---- 84
                 +  H  ++          K+  L  ++++        +V       L  +    
Sbjct: 437 EGEDSPDVDHIDQITDNTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 496

Query: 85  --------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                   +        L+++             +        G GL L      +V F 
Sbjct: 497 KNRHFKTLRIDGTITHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVIFD 555

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K+ V VY LI   T++E + +R   K ++      
Sbjct: 556 PSWNPAT-----DAQAVDRVYRIGQKQNVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG 610

Query: 197 ALK 199
             K
Sbjct: 611 EKK 613


>gi|292630869|sp|B3LN76|RDH54_YEAS1 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|190408764|gb|EDV12029.1| helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 924

 Score = 87.9 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K++ 
Sbjct: 575 ARLDFGRLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLRV 634

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 635 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 694

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 695 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 748

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 749 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 781


>gi|302681469|ref|XP_003030416.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
 gi|300104107|gb|EFI95513.1| hypothetical protein SCHCODRAFT_58011 [Schizophyllum commune H4-8]
          Length = 1312

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 76/207 (36%), Gaps = 30/207 (14%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEK--ANAAP 70
            +  +  ++  + AN    +D  +   +          ++  K+  L+ ++ +   +   
Sbjct: 511 ISLLNIVMELKKAANHPFLFDGAELRSDDNEATLKGLVMNSGKMVLLDKLLARLRQDGHR 570

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPAS 118
           +++       L  L         + +              +  +N    P         +
Sbjct: 571 VLIFSQMVRMLDILSDYMSLRGYIHQRLDGTIASDARKKAMAHFNMPGSPDFAFLLSTRA 630

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ F   W+ +      +   + R  + G K  V VY  ++++T++E
Sbjct: 631 GGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARAHRIGQKSHVSVYRFVSKDTVEE 684

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +L++ + K  ++  ++N +     H+
Sbjct: 685 EILEKAKAKMVLEYAIINQMDTTQAHL 711


>gi|307177261|gb|EFN66439.1| DNA repair and recombination protein RAD54B [Camponotus floridanus]
          Length = 845

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 73/205 (35%), Gaps = 40/205 (19%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHW----------------KEVHDEKIKALEVIIE----- 64
            S  +   ++ N    +  +K                  ++ +  K      I++     
Sbjct: 546 LSIIIALKKICNHPNLFINDKENTLRETLSKAICTIQLKQDKNFIKYCGKITILQVLMRN 605

Query: 65  -KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN--EGKIPL 111
            K     +++  ++   L   +                 +       I+++N       +
Sbjct: 606 LKKTDEKLVLVSYYTQTLDLFETICNIEELKFLRLDGTISSSTRSKIIEQFNTRSDNSKI 665

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL  G + LV F   W+        +   + R  + G K+ V++Y L+
Sbjct: 666 LLLSAKAGGVGLNL-PGASRLVLFDSDWNPAS-----DVQAMARIWRDGQKKNVYIYRLL 719

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              TI+E + QR  +K+++ + +++
Sbjct: 720 TTGTIEEKIYQRQISKASLSESVVD 744


>gi|195436975|ref|XP_002066420.1| GK18104 [Drosophila willistoni]
 gi|194162505|gb|EDW77406.1| GK18104 [Drosophila willistoni]
          Length = 842

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 34  QLANGAVYYD-EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           QL N    YD +      V   K   L+ I+ K       +++   F   L  ++     
Sbjct: 627 QLCNKYQLYDVKIPDHLIVDSGKFSYLDKILPKLREEGHRVLLFSQFTMMLDIVEEYLRI 686

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                     G  + +    I ++N +  I +      + G G+NL    +  +   + +
Sbjct: 687 RKHGFCRLDGGTAVKERQDLITDFNVDDNIFVFLLSTKAGGVGINLTA-ADTCIIHDIDF 745

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +        ++    R  + G  R V +Y LI+++TI+E +L     K  ++  +
Sbjct: 746 NP-----YNDKQAEDRCHRMGQMRPVSIYRLISESTIEEGILMAAEEKLKLEKDI 795


>gi|145355576|ref|XP_001422035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582274|gb|ABP00329.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 589

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 30/198 (15%)

Query: 28  KTVKCLQLANGA---------VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH 76
             ++  +  N                          K++ L+ ++ +  A    +++   
Sbjct: 318 MLMQLRKNCNHPDLITGGLDGSIMFPSADELVEQCGKMQLLDRLMTRLRARGHKVLIFSQ 377

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
               L  L+  F Q              D     I  +N + K  +      + G G+NL
Sbjct: 378 MTRMLDLLESFFQQRGEPVCRIDGSVKQDDRREFIARFNEDPKYGIFLLSTRAGGLGINL 437

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             GG+ ++ +   W+  +     +   + R  + G  + V VY L    +++  +L++  
Sbjct: 438 T-GGDTVIIYDSDWNPHQ-----DLQAMDRVHRIGQTKPVHVYRLATAKSVEGKMLKKAA 491

Query: 186 TKSTIQDLLL--NALKKE 201
           +K  ++ L++     K+E
Sbjct: 492 SKLALEKLVVTNGGFKQE 509


>gi|190405721|gb|EDV08988.1| chromo domain protein 1 [Saccharomyces cerevisiae RM11-1a]
          Length = 1436

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 592 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 651

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 652 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 711

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 712 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 765

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 766 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 813


>gi|171687883|ref|XP_001908882.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943903|emb|CAP69555.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1700

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 36/227 (15%)

Query: 1   MKQYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           ++ Y       Y  L    N    +  +  ++  +++N    +   +     +       
Sbjct: 719 LEYYKNILTRNYAALSDASNGHKQSLLNIMMELKKVSNHPYMFQGAEERVLANGSGRRED 778

Query: 53  --------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                     K+  L+ ++ K   +   +++       L  L           +      
Sbjct: 779 AVKGLITSSGKMMLLDQLLAKLKKDGHRVLIFSQMVKMLDILADYLRIRGYQFQRLDGTI 838

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +N              + G G+NL    + ++ +   W+ +      + 
Sbjct: 839 PAGPRRLAINHFNAEDSDDFCFLLSTRAGGLGINLMT-ADTVIIYDSDWNPQA-----DL 892

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  + G KR V VY L+A+ TI+E V++R R K  ++ L + A
Sbjct: 893 QAMARAHRIGQKRPVNVYRLVAKQTIEEEVVKRARNKLFLEYLTIQA 939


>gi|189423365|ref|YP_001950542.1| non-specific serine/threonine protein kinase [Geobacter lovleyi SZ]
 gi|189419624|gb|ACD94022.1| Non-specific serine/threonine protein kinase [Geobacter lovleyi SZ]
          Length = 641

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y + +      ++     A        +        +           H  K + L  
Sbjct: 416 EMYEQVR---LAIIEEYGKSAS--LVSLQRLRMFCTHPLLAGFALADPTEHMPKYQRLIE 470

Query: 62  IIEK--ANAAPIIVAYHFN-------SDLARLQKAFPQGRTLDK-----DPCTIQEWN-E 106
           ++E+  +     ++   +         DL++            +         +  ++  
Sbjct: 471 LLEEIFSRREKCLIFTGYTGMTDILMHDLSKRFVDQYFNFIDGRVPVPDRQTIVDAFSIS 530

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                L  +P + G GLN+    N ++ ++  W+        E     R  +    R V 
Sbjct: 531 PTSGALILNPRAAGVGLNITA-ANHVIHYNPEWNPAL-----EDQASARAYRRKQTRPVT 584

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           V+ L   ++++E+V+ RL+ K  + +
Sbjct: 585 VHQLYFVDSVEEVVVGRLKLKRGLSE 610


>gi|261335089|emb|CBH18083.1| ATP-dependent helicase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1211

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 40  VYYDEEKHWKEVHD-EKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQK 86
             +        +HD  K++ L+  +++       +++   F   L               
Sbjct: 825 RCFSFPDRHLLIHDCGKLQFLKHCLKQLRREGHRMLIFTQFVHMLNILERFLALIGLPYL 884

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   ++    +  +N + +I  +     S G GLNL  G + ++F+   W+     
Sbjct: 885 RIDGSTQPERRQAYVDWFNEDERITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT--- 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++     R  + G  + V +Y LI+++T++E +LQ+ R +  + ++++
Sbjct: 941 --MDLQAQDRCHRIGQTKPVTIYRLISEHTVEESILQKARERKKLNNVVI 988


>gi|189208001|ref|XP_001940334.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976427|gb|EDU43053.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 742

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 59/176 (33%), Gaps = 17/176 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
           A+       E + + +  +    +  ++++      IV   + S L  +QK         
Sbjct: 556 ASSPSGPACEINDEPLPTKIKALVSDLLKQPKGTKSIVFSFWTSTLDLVQKGLSGSFITY 615

Query: 96  KD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                                +  I ++    +    GL++    +        W+    
Sbjct: 616 TRFDGTTSQSNRSTALKDFRQDPSISVILMTISCSAVGLDITA-ASRAYILEPQWNPT-- 672

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +E   + R  + G  + V     + +NT +E V++    K  + +LLL++ ++
Sbjct: 673 ---VEEQALARVHRMGQTKPVTTIRFVMENTFEERVVETQERKRRLAELLLSSEEQ 725


>gi|157953042|ref|YP_001497934.1| hypothetical protein NY2A_B738L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123269|gb|ABT15137.1| hypothetical protein NY2A_B738L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 458

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 24/218 (11%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWK--EVHDE 54
           + Y +        L+     G+         + ++  Q          +   +  E +  
Sbjct: 225 ELYDELVENGRLLLKAYNAYGDGEGRMKLLEQLMRMRQCVTNPQLLFMKSDDERWEGNYT 284

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
           K+  L+  I+       I+  ++  ++  ++                   ++    ++ +
Sbjct: 285 KLNMLKREIQNNPIEKTIIFCNWIHEMISIENMLHSIGYDSVMLNGKTPNEQRDINVKRF 344

Query: 105 N-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N +  I        S G GLNLQ   + +   SL W+        E   + R  + G  +
Sbjct: 345 NEDDNINFFIVQIESGGIGLNLQ-VASRVFINSLSWNATT-----EIQAIARAHRIGQTK 398

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V V  LI  NT DE VL   + K  I   + +  + E
Sbjct: 399 DVTVKRLIINNTFDEYVLNLQQKKLEIASEIFDDKRIE 436


>gi|241951336|ref|XP_002418390.1| TATA-binding protein-associated factor, putative; TBP-associated
            factor, putative; helicase, putative; modifier of
            transcription, putative [Candida dubliniensis CD36]
 gi|223641729|emb|CAX43690.1| TATA-binding protein-associated factor, putative [Candida
            dubliniensis CD36]
          Length = 1918

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
            +K +  I+E       + +  F                       ++++N +  I +L  
Sbjct: 1695 LKDMLDIVENELLRKYLPSVTFMR--------LDGSTDPRDRQSIVRKFNEDPSIDVLLL 1746

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                 G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI ++
Sbjct: 1747 TTKVGGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKD 1800

Query: 175  TIDELVLQRLRTKSTIQDLLLN 196
            T++E ++   + K  I   ++N
Sbjct: 1801 TLEEKIMGLQKFKMNIASTIVN 1822


>gi|74025142|ref|XP_829137.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834523|gb|EAN80025.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 1211

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 40  VYYDEEKHWKEVHD-EKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQK 86
             +        +HD  K++ L+  +++       +++   F   L               
Sbjct: 825 RCFSFPDRHLLIHDCGKLQFLKHCLKQLRREGHRMLIFTQFVHMLNILERFLALIGLPYL 884

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   ++    +  +N + +I  +     S G GLNL  G + ++F+   W+     
Sbjct: 885 RIDGSTQPERRQAYVDWFNEDERITCMILSTRSGGIGLNLT-GADTVIFYDSDWNPT--- 940

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++     R  + G  + V +Y LI+++T++E +LQ+ R +  + ++++
Sbjct: 941 --MDLQAQDRCHRIGQTKPVTIYRLISEHTVEESILQKARERKKLNNVVI 988


>gi|237737828|ref|ZP_04568309.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229419708|gb|EEO34755.1| SWF/SNF family helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 913

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 28/213 (13%)

Query: 2   KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y  +       G     F       +  Q+ +       E     V   K
Sbjct: 693 KLYEERRNYYYNMVHSQIKENGLGKTQFFILQALNELRQITS-----CPESKSVGVTSSK 747

Query: 56  IKALEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEW 104
            + L   I     N   ++V  ++ +         +   ++     G T D+     +  
Sbjct: 748 REVLINNILDAVENGHKVLVFTNYINSIKNICDDLEKYGIKYLSMSGATKDRQLLVDKFQ 807

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 808 KDNKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 861

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y LI ++TI+E +LQ   +K  + D L++ 
Sbjct: 862 VFSYKLILKDTIEEKILQLQESKIKLLDSLISE 894


>gi|322499769|emb|CBZ34843.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1044

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------- 89
           A     +         K++ L+ ++ +  A     ++  +F + L  L+           
Sbjct: 589 AAGVPMDAAHLIDPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYE 648

Query: 90  ---QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +   ++  +N       L      + G G+ L  G + ++ F   ++ +  
Sbjct: 649 RLDGSCNRVERELSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFDAHFNPQL- 706

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +R    R  + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 707 ----DRQAADRAHRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 758


>gi|148709831|gb|EDL41777.1| mCG13925 [Mus musculus]
          Length = 1372

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 27/212 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            ++ Y  F +        E +   A +  ++  K    A G V+                 
Sbjct: 1103 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK--ATGHVFQLLLDCGLGNGSSTESG 1160

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWN 105
             E ++ +     I++     S L  ++                       +    +  +N
Sbjct: 1161 TESVVAQ---HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFN 1217

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +  I +L       G GLNL  G + +VF    W+        +   + R  + G KR 
Sbjct: 1218 NDPSIDVLLLTTHVGGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRV 1271

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V VY LI + T++E ++   + K  I + +++
Sbjct: 1272 VNVYRLITRGTLEEKIMGLQKFKMNIANTVIS 1303


>gi|146089132|ref|XP_001466244.1| helicase  [Leishmania infantum JPCM5]
 gi|134070346|emb|CAM68683.1| putative helicase-like protein [Leishmania infantum JPCM5]
          Length = 1044

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------- 89
           A     +         K++ L+ ++ +  A     ++  +F + L  L+           
Sbjct: 589 AAGVPMDAAHLIDPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYE 648

Query: 90  ---QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +   ++  +N       L      + G G+ L  G + ++ F   ++ +  
Sbjct: 649 RLDGSCNRVERELSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFDAHFNPQL- 706

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +R    R  + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 707 ----DRQAADRAHRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 758


>gi|322492504|emb|CBZ27779.1| putative helicase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1044

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------- 89
           A     +         K++ L+ ++ +  A     ++  +F + L  L+           
Sbjct: 586 AAGVPMDAAHLIDPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAMCHLRGHSYE 645

Query: 90  ---QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +   ++  +N       L      + G G+ L  G + ++ F   ++ +  
Sbjct: 646 RLDGSCNRVERELSMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFDAHFNPQL- 703

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +R    R  + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 704 ----DRQAADRAHRIGQTRTVHVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 755


>gi|213404262|ref|XP_002172903.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000950|gb|EEB06610.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1356

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 39/226 (17%)

Query: 4   YHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           Y       Y  L          +  +  ++  + +N    +   +               
Sbjct: 618 YKNILTRNYRVLSQSTSNGSQLSLLNIVMELKKASNHPYLFPGVEETWLKKTGGEGKREE 677

Query: 53  --------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                     K+  L+ ++ + +     +++       L  L           +      
Sbjct: 678 LLKGLIMNSGKMVLLDKLLTRLHRDGHRVLIFSQMVRMLDILGDYMSLRGYPFQRLDGTV 737

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  +I  +N    P  +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 738 PAATRRISIDHFNAPNSPDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++TI+E VL+R R K  ++  +++
Sbjct: 792 QAMARAHRIGQKNHVMVYRFLSKDTIEEDVLERARRKMILEYAIIS 837


>gi|145233919|ref|XP_001400332.1| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
 gi|134057271|emb|CAK37885.1| unnamed protein product [Aspergillus niger]
          Length = 1123

 Score = 87.9 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             ++     K+ + +   K+  L  ++   K N    +V   F   +  L+          
Sbjct: 925  HSLGRFALKNNEWMDSGKVDKLCDLLKRFKENGDRALVFSQFTLVMDILEHVLENQHIGF 984

Query: 96   ----------KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                           +  ++E   IP+      + G G+NL    N ++ F   ++ +  
Sbjct: 985  VRLDGRTNVEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-- 1041

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                +     R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1042 ---EDVQAENRAHRVGQTRDVEVIRLVTKGTIEEQIYALGQTKLALDQAV 1088


>gi|325120775|emb|CBZ56330.1| hypothetical protein NCLIV_067550 [Neospora caninum Liverpool]
          Length = 2638

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVI 62
             QR LY  ++G  +      ++ V+  ++ N    +    +  +        K   L+V+
Sbjct: 1532 VQRYLYKMIEGNPVGQ----NRMVQLRKICNHPYLFCYSSYTPDESLVRCCGKFAMLDVL 1587

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GK 108
            +   K     +++       L  L+               G + ++    +  +N+   +
Sbjct: 1588 LPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLTLYNQEGSE 1647

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +      +    +R  + G K+ V   
Sbjct: 1648 YFIFILSTKAGGLGVNLQS-ADTVIIFDSDWNPQN-----DEQAQSRAHRIGQKKEVLTL 1701

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              I+  +I+E +LQR   K     L++ +
Sbjct: 1702 RFISVESIEEQILQRAECKLDRDKLVIQS 1730


>gi|159478845|ref|XP_001697511.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas reinhardtii]
 gi|158274390|gb|EDP00173.1| chromodomain-helicase-DNA-binding protein [Chlamydomonas reinhardtii]
          Length = 2000

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 60/220 (27%), Gaps = 57/220 (25%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH----------------------------------D 53
              ++  +L    V  D  +   ++                                    
Sbjct: 909  LAMELRKLCCHPVLCDGLEDDLKLKLTQQRLAAEAAAAAEGHAPDTEFKCPETEVLVRGS 968

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTI 101
             K+  L  ++ K  A    +++   F   L  L+                    +    I
Sbjct: 969  GKMTLLHKLLPKLRAEGKRVLIFSQFVMMLNVLEDYCTLMGYPVERIDGSIKGRERQQAI 1028

Query: 102  QEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++          +      + G G+ L    +  + +   W+ +      +   + R 
Sbjct: 1029 DRFSAADADQDKAFVFLLSTRAGGQGITLTA-ADTCIIYDSDWNPQN-----DLQAMARC 1082

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  + V VY LI+ +T +  +      K  + + +L 
Sbjct: 1083 HRIGQTKEVTVYRLISADTYEMALFSSASRKYGLDEAVLG 1122


>gi|9972383|gb|AAG10633.1|AC022521_11 Similar nucleotide excision repair proteins [Arabidopsis thaliana]
          Length = 627

 Score = 87.9 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIP 110
           ++E+  +A  IV   F S L  +  A  +                KD        E    
Sbjct: 436 MVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCR 495

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     + G  LNL    + +     WW+       +ER    R  + G  + V V   
Sbjct: 496 VLLMSLQAGGVALNLTA-ASHVFMMDPWWNPA-----VERQAQDRIHRIGQCKPVRVVRF 549

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I + T++E +L   + K  + +  L
Sbjct: 550 IMEKTVEEKILTLQKKKEDLFERFL 574


>gi|119177366|ref|XP_001240470.1| hypothetical protein CIMG_07633 [Coccidioides immitis RS]
          Length = 1142

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K++ L  ++++   N   I++   F             L           +
Sbjct: 931  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVMDILEQVLETLEIRFFRLDGTTS 990

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  + E   +P+      + G G+NL    N ++ F   ++ ++     +   
Sbjct: 991  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQD-----DIQA 1044

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1045 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLALDQRV 1086


>gi|255544141|ref|XP_002513133.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223548144|gb|EEF49636.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 993

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
             I+   + S L  ++ +  Q     +              ++++N + ++ ++     +
Sbjct: 836 KSIIFSQWTSMLDLVEFSLNQHCIQYRRLDGTMTLGARDRAVKDFNTDPEVTVMLMSLKA 895

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 896 GNLGLNMVAACH-VILLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVTRLTIKDTVED 949

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  +       
Sbjct: 950 RILALQEEKRRMVASAFGE 968


>gi|70996252|ref|XP_752881.1| dsDNA-dependent ATPase (Rad54b) [Aspergillus fumigatus Af293]
 gi|66850516|gb|EAL90843.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
           Af293]
          Length = 969

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N       +                      +H+      KI+ 
Sbjct: 567 NSENALQLITILKKLCNSPSLLSPKTGDERPSETITALLSSLPPNLLRHFTPSCSAKIRV 626

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++     + +  I++  ++ S L  L                     K    ++++N
Sbjct: 627 LDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQALVEDFN 686

Query: 106 E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +         + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 687 RLPPNRCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DVQAMARIHRDGQK 740

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 741 RHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 774


>gi|320581787|gb|EFW96006.1| Putative DNA helicase INO80 [Pichia angusta DL-1]
          Length = 1280

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
            +   K+  L+ ++   K N    ++ +     +  +++     +              + 
Sbjct: 1092 IESGKLAKLDEMLVDLKKNGHKCLIYFQMTKMMDLMEEFLTYRQYKYIRLDGSSKLSDRR 1151

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + ++ +      + G G+NL    + ++F+   W+       I+   + R  
Sbjct: 1152 DLVHDWQTKPELFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAH 1205

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1206 RLGQTRQVTVYRLLVRGTIEERMRDRAKQKEHVQQVVMEG 1245


>gi|302917785|ref|XP_003052516.1| hypothetical protein NECHADRAFT_105975 [Nectria haematococca mpVI
           77-13-4]
 gi|256733456|gb|EEU46803.1| hypothetical protein NECHADRAFT_105975 [Nectria haematococca mpVI
           77-13-4]
          Length = 915

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 19/176 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
            +    + +   KI+ L  I++ +      IV   F S L  ++  F +           
Sbjct: 707 RDPHSPQVLASSKIRELIKILQAEVKEHKFIVFSQFTSMLDLVEPFFRKERFSFVRYDGS 766

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              D+   +++    + K  +L         GLNL      +V    +W+       +E 
Sbjct: 767 MKNDEREESLRRLRSDPKTRILLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVEE 820

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
             + R  +      V +Y L    T++E +L     K  + +  +   ++KE   +
Sbjct: 821 QAIDRVHRLTQTVDVIIYKLTVTKTVEERILDLQEKKRLLAEQAIEGGMRKEGFKL 876



 Score = 39.3 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 5/44 (11%), Positives = 12/44 (27%), Gaps = 3/44 (6%)

Query: 2   KQYHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           K Y +           +    +   N+ +  ++  Q  N     
Sbjct: 417 KFYDRLAARADRSIEAMMRGRVNYANALTLLLRLRQACNHPKLV 460


>gi|242015095|ref|XP_002428209.1| Chromo domain protein, putative [Pediculus humanus corporis]
 gi|212512770|gb|EEB15471.1| Chromo domain protein, putative [Pediculus humanus corporis]
          Length = 1795

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 69/223 (30%), Gaps = 40/223 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++     ++G      N   +  K         +  +    +   +E      +
Sbjct: 685 KNYSALRKG----VKGSTTTFNNIVIELKK----CCNHAFLTKPSETENKSNEADSLQML 736

Query: 62  I--------------IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
           +                K     +++       L  L +     R   +           
Sbjct: 737 LRGSGKLVLLDKLLVRLKETNHRVLIFSQMVRMLDILAEYLQLRRFQFQRLDGSIKGEIR 796

Query: 98  PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +  +N              + G G+NL    + ++ F   W+ +      +     R
Sbjct: 797 KQALDHFNAENSMDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQAR 850

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             + G K  V +Y L+ +N+++E +++R + K  +  L++  +
Sbjct: 851 AHRIGQKNQVNIYRLVTKNSVEEEIIERAKKKMVLDHLVIQRM 893


>gi|121705194|ref|XP_001270860.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119399006|gb|EAW09434.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1131

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 22/179 (12%)

Query: 32   CLQLA-NGA--VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN-------- 78
            C  L  N    +     K+ + ++  K+  L  ++   K N    +V   F         
Sbjct: 924  CHSLCINHPNSLGKFALKNDEWMNSGKVDKLCELLKRFKENGDRTLVFSQFTMVMDILEH 983

Query: 79   --SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                L            ++     +  ++E   IP+      + G G+NL    N +V F
Sbjct: 984  VLETLHLEFVRLDGRTNVEDRQSILDAFHERTDIPVFLLSTKAGGAGINL-ACANKVVIF 1042

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++ +      +     R  + G  + V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1043 DSSFNPQ-----EDVQAENRAHRVGQTQEVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1096


>gi|225440123|ref|XP_002277489.1| PREDICTED: similar to SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein [Vitis vinifera]
          Length = 874

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 23/165 (13%)

Query: 49  KEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTL 94
            E    K+  L   +    ++  +   +V   F   L  L++                  
Sbjct: 695 SECTSSKVLTLLKFLSASRDQNPSTKSVVFSQFRKMLLLLEQPLKAAGFKTLRLDGSMNA 754

Query: 95  DKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    I+E+         +L A   + G G+NL    + +     WW+       +E  
Sbjct: 755 KRRAQVIEEFGAPGPNGPTVLLASLKASGAGINLTA-ASRVYLLEPWWNPA-----VEEQ 808

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R  + G K  V +  LIA+N+I+E +L+    K  +      
Sbjct: 809 AMDRVHRIGQKEDVKIVRLIARNSIEERILELQERKKKLAKEAFG 853


>gi|255937135|ref|XP_002559594.1| Pc13g11770 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584214|emb|CAP92246.1| Pc13g11770 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 834

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 33  LQLANGA--VYYDEEKHWKEVH------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
               N     Y+        V         K+  L+ ++         I++   F + L 
Sbjct: 568 RLACNSPHNFYWPWMDESSSVDESLVSASGKMLLLDRLVACLLKKGHKILIFSQFKTQLD 627

Query: 83  -----------RLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGN 130
                                   +    I+ +N  K   L      + G G+NL    +
Sbjct: 628 IIEEWATTLRSWDCCRIDGAIAQSERQAQIKNFNTKKSHKLFLLSTRAGGQGINLTA-AD 686

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ F   W+ ++     +     R  + G  + V +Y L  + T+++ +L++  +K  +
Sbjct: 687 TVIIFDSDWNPQQ-----DLQAQDRAHRIGQTKPVIIYRLATKGTVEQTLLEKADSKRRL 741

Query: 191 QDLLLNALKKETI 203
           + L++   K  ++
Sbjct: 742 ERLVIQKGKFRSL 754


>gi|196008607|ref|XP_002114169.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
 gi|190583188|gb|EDV23259.1| hypothetical protein TRIADDRAFT_27976 [Trichoplax adhaerens]
          Length = 687

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 52  HDEKI----KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
           H  K+      L+ I + +    ++V  +F   L  LQK                   K 
Sbjct: 490 HSGKLAVLSNLLDWIYQNSPKEKVVVVSNFTRTLDVLQKMCKSKNYRYVRLDGSTPTSKR 549

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +N       +      + G GLNL  G + LV + + W+        +   + R
Sbjct: 550 HTIVENFNSSYSKTFVFLLSSKAGGTGLNL-IGASRLVLYDIDWNPAN-----DLQAMAR 603

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G KR V++Y L+   TI+E + QR   K  +   +++
Sbjct: 604 IWRDGQKRDVYIYRLVTTGTIEEKIFQRQVMKHDLSGAVMD 644


>gi|50289267|ref|XP_447064.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526373|emb|CAG59997.1| unnamed protein product [Candida glabrata]
          Length = 1126

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 32   CLQLANGA---VYYDEEKHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFN------- 78
              +L       +   + K+ + ++  K   +K L   I       +++   F        
Sbjct: 924  LHRLCCNFPNTLGDYQLKNDEWMNSGKVDALKKLLDDIINKKREKVLIFTLFTQVLDILE 983

Query: 79   ---SDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVF 134
               S L            ++     I ++ +   IP+      + G G+NL    N ++ 
Sbjct: 984  KVLSTLNYKFLRLDGSTQVNDRQTMIDKFYDDNTIPIFMLSTRAGGFGINL-VCANHVII 1042

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  + V V  LI +++I+E + Q  +TK  +   +
Sbjct: 1043 FDQSFNPHD-----DRQAADRAHRVGQTKEVTVTTLITKDSIEEKIFQLAKTKLALDSQV 1097


>gi|255944965|ref|XP_002563250.1| Pc20g07250 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587985|emb|CAP86054.1| Pc20g07250 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1119

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 80/265 (30%), Gaps = 77/265 (29%)

Query: 1    MKQYH---KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------- 41
            +K Y    +  R+L  D +        SA+  +K  Q A   +                 
Sbjct: 829  VKIYDHEKEQVRQLLADREAGKKTGSKSANILMKLRQAAIHPLLARRHYTNEILQKMAKA 888

Query: 42   ------------------------YDEEKHWKEVHDE---------------KIKALEVI 62
                                    ++  +   E  +                K++ L+ +
Sbjct: 889  CLKEDKWSLSDPKIILEELMPYNDFECHQMCVENPNSLGKFKLKNDEWMDSGKVEQLKEL 948

Query: 63   IEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKI 109
            + +   N    ++   F             L            ++     +  ++E  +I
Sbjct: 949  LTRFIANGDRTLIFSQFTMVMDILEHVLETLKIEFVRLDGRTNVEDRQSILDAFHERTEI 1008

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P+      + G G+NL    N +V F   ++ +      +     R  + G  R V VY 
Sbjct: 1009 PVFLLSTKAGGAGINL-ACANRVVIFDSSFNPQ-----EDVQAENRAHRVGQTREVEVYR 1062

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLL 194
            L+ ++TI+E +    +TK  +   +
Sbjct: 1063 LVTRHTIEEQIYGLGQTKLALDQAV 1087


>gi|327532753|ref|NP_001192192.1| DNA repair and recombination protein RAD54B 3 [Homo sapiens]
 gi|119612118|gb|EAW91712.1| hCG2009220, isoform CRA_b [Homo sapiens]
          Length = 726

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 372 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 430

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 431 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 490

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 491 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 549

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 550 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 604

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 605 CGAVVDLTK 613


>gi|320170477|gb|EFW47376.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1345

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
           K +   +++       L  +Q+                T  +    I ++N +  I    
Sbjct: 647 KQDGHRVLIFSQSTRMLDLIQEVLTYQKYSLIRIDGSVTGHERQHRIDKFNTDDSIFGFL 706

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G G+ L    + ++     W+       I+   V R  + G  R V +Y LI  
Sbjct: 707 LTTQVGGVGITLTS-ADRVIIVDPSWNPA-----IDTQAVDRAYRIGQTRNVVIYRLITC 760

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
            TI+E +  R   KS    ++++
Sbjct: 761 GTIEEKIYCRQVYKSDFSHVMID 783


>gi|149062768|gb|EDM13191.1| similar to TBP-associated factor 172 (TAF-172) (TAF(II)170)
            (predicted) [Rattus norvegicus]
          Length = 1372

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 17/207 (8%)

Query: 1    MKQYHKFQRELYCDLQGENIE--AFNSASKTVKCL------QLANGAVYYDEEKHWKEVH 52
            ++ Y  F +        E +   A +  ++  K        QL       +         
Sbjct: 1103 VQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQLLLDCGLGNGTSSESGTE 1162

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFN--SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKI 109
                +   +I  +  +   IV +        +             +    +  +N +  I
Sbjct: 1163 SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSI 1222

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L       G GLNL  G + +VF    W+        +   + R  + G KR V VY 
Sbjct: 1223 DVLLLTTHVGGLGLNLT-GADTVVFVEHDWNPMR-----DLQAMDRAHRIGQKRVVNVYR 1276

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LI + T++E ++   + K  I + +++
Sbjct: 1277 LITRGTLEEKIMGLQKFKMNIANTVIS 1303


>gi|118096755|ref|XP_414277.2| PREDICTED: similar to KIAA0809 protein [Gallus gallus]
          Length = 1473

 Score = 87.5 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR--LQKAFPQGRTLDKDPCTIQEWNEGK---IP 110
           +  +E  + K        +     +  R           +  +    I ++N+     + 
Sbjct: 759 LSVIEEFLAKRPMPNPPGSDGGVHNWVRNISYYRLDGSTSASERERLINQFNDPSNASVW 818

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           L      +   G+NL  G N +V F   W+        +   V R  + G K+   +Y L
Sbjct: 819 LFLLSTRAGCLGVNL-IGANRVVVFDASWNP-----CHDAQAVCRVYRYGQKKPCHIYRL 872

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           ++  T+++ +  R  +K  + D +++ L 
Sbjct: 873 VSDYTLEKKIYDRQISKQGMSDRVVDDLN 901


>gi|326927740|ref|XP_003210048.1| PREDICTED: helicase ARIP4-like [Meleagris gallopavo]
          Length = 1470

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWNEGK---IPL 111
           +  +E  + K        +   ++ +  +      G T   +    I ++N+     + L
Sbjct: 757 LSVIEEFLAKRPMPSPPGSDGIHNWVRNISYYRLDGSTSASERERLINQFNDPSNASVWL 816

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G+NL  G N +V F   W+        +   V R  + G K+   +Y L+
Sbjct: 817 FLLSTRAGCLGVNL-IGANRVVVFDASWNP-----CHDAQAVCRVYRYGQKKPCHIYRLV 870

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +  T+++ +  R  +K  + D +++ L 
Sbjct: 871 SDYTLEKKIYDRQISKQGMSDRVVDDLN 898


>gi|221120608|ref|XP_002153791.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
           [Hydra magnipapillata]
          Length = 1665

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 64/221 (28%), Gaps = 33/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---------------EK 46
           K Y     + +  L     +  +  +  ++  +  N    +                 + 
Sbjct: 750 KYYKYILTKNFGALNTRGSQQVSLLNIVMELKKCCNHPYLFSTASLEAPRYANNAYEVKG 809

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
             +      +    +   K     +++       L  L+          +          
Sbjct: 810 LTEASGKLVLLYKMLKKLKEQGHRVLIFSQMTRVLDLLEDFMEGHGWRYERLDGTITGGI 869

Query: 98  -PCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N     +        + G G+NL    + +  +   W+        +    +
Sbjct: 870 RQSAIDRFNLPNSEIFSFLLSTRAGGLGINL-ATADTVFIYDSDWNP-----HNDIQAFS 923

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G +  V +Y  + ++T++E + Q  + K  +  L++
Sbjct: 924 RAHRIGQQNKVMIYRFVTKSTVEERITQVAKKKMMLTHLVV 964


>gi|50290775|ref|XP_447820.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527131|emb|CAG60769.1| unnamed protein product [Candida glabrata]
          Length = 844

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 35/217 (16%)

Query: 12  YCDLQGENIEAFNSASK-------TVKCLQLANGAVYYDEEKHWKEV--------HDEKI 56
              +    +E  N+ +K        ++  Q+ +  + +       E            K+
Sbjct: 538 IKQMDDIYMEHLNTFTKNQRLQNMMMQLRQVVDSTLLFFFPYMEPEDITLDYLLASSGKL 597

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEW 104
           + L+ +          I++   F   L  L+               G   +     I E+
Sbjct: 598 QMLQKLAIPLIKKGHKILIFSQFVGMLDLLEDWSELNSFNSLRIDGGVDNESRKEYIDEF 657

Query: 105 NE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N+      +      + G G+NL    + ++ F   W+ +     ++   + R  + G  
Sbjct: 658 NKKGDDHQIFLLSTRAAGLGINLVA-ADTVIIFDSDWNPQ-----VDLQAMDRCHRIGQT 711

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + V VY     NTI+ ++L R   K  ++ +++   K
Sbjct: 712 KPVIVYRFCCDNTIEHVILTRAVNKRKLERMVIQMGK 748


>gi|255710645|ref|XP_002551606.1| KLTH0A03410p [Lachancea thermotolerans]
 gi|238932983|emb|CAR21164.1| KLTH0A03410p [Lachancea thermotolerans]
          Length = 806

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 70/190 (36%), Gaps = 28/190 (14%)

Query: 29  TVKCLQLANG------AVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFN 78
            ++  Q+ +            E    + +     K++ L+ ++    A    +++   F 
Sbjct: 528 MIQLRQVVDSTLLFFFPFLDPEHLTLEFLLQTSGKLQILQQLVPPLVAKKHKVLIFTQFV 587

Query: 79  SDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQ 126
           S L  ++                   +     I+ +N+G            + G G+NL 
Sbjct: 588 SMLDLIEDWCELNEIRVCRIDGSMDNEARQEHIERFNDGHDSYDAFLISTRAGGLGINLT 647

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + +V F   W+ +     ++   + R  + G  + V VY L   NT++ ++L R  +
Sbjct: 648 A-ADTVVLFDSDWNPQ-----VDLQAMDRTHRIGQTKPVIVYRLCCDNTVEHVILTRAAS 701

Query: 187 KSTIQDLLLN 196
           K  ++ +++ 
Sbjct: 702 KRKLEKMVIQ 711


>gi|294658308|ref|XP_002770756.1| DEHA2F06446p [Debaryomyces hansenii CBS767]
 gi|202953033|emb|CAR66284.1| DEHA2F06446p [Debaryomyces hansenii]
          Length = 884

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 39/206 (18%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEV------------------HDEKIKALEVIIEK 65
           NS +      ++ N      ++K +  +                     K+  L  ++ +
Sbjct: 544 NSLTLITLFKKICNSPSLLFQDKLFNSLIENEHDSTIDLTTLSKKTASSKVNILIPLLIE 603

Query: 66  AN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--- 110
            N      ++  ++   L  L+    +                    + ++N+  +    
Sbjct: 604 INQIGDKTVLISNYTQTLDLLETILHKLNISFSRLDGSTPNKLRDKLVNDFNKQPVSTNS 663

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G GLNL  G + L+ F   W+       I+   + R  + G  + VF+Y +
Sbjct: 664 VFLLSAKSGGVGLNL-IGASRLILFDNDWNPS-----IDLQAMARIHRDGQTKPVFIYRI 717

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           +    IDE + QR   K+ + D  L+
Sbjct: 718 MTTGCIDEKIFQRQMMKNNLSDKFLD 743


>gi|116195488|ref|XP_001223556.1| hypothetical protein CHGG_04342 [Chaetomium globosum CBS 148.51]
 gi|88180255|gb|EAQ87723.1| hypothetical protein CHGG_04342 [Chaetomium globosum CBS 148.51]
          Length = 836

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 29/210 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------KHWKEVHDEKIKAL 59
           R    ++    I      +  ++   + N    +                     K+  L
Sbjct: 545 RAQTLEVAKREIANKKLGNPLLQLRLVCNSPHNFYNPWASGTDLPIDESIVTASGKMLLL 604

Query: 60  EVIIEK--ANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWN- 105
           + ++         +++   F                        G   +     I ++N 
Sbjct: 605 DRLLPTLFKRGHKVLIFSQFKTQLDILEDYCSELRKWPVCRIDGGVAQEDRRTEIHQFNT 664

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + K+ +      + G G+NL    + ++ F   W+ ++     +     R  + G  R V
Sbjct: 665 DPKLKIFLLSTRAGGQGINL-ASADTVILFDSDWNPQQ-----DLQAQDRAHRIGQTRPV 718

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY L  + T++E +L     K  ++ L++
Sbjct: 719 IVYRLATKGTVEEGLLMSADAKRRLEKLVI 748


>gi|58266612|ref|XP_570462.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|134110952|ref|XP_775940.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258606|gb|EAL21293.1| hypothetical protein CNBD3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226695|gb|AAW43155.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 818

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 21/167 (12%)

Query: 53  DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
             K   LE +++  N      I++  +    L  ++K                ++ K   
Sbjct: 575 SGKFVVLERMLDHINHHTNDKIVLISNATQTLDLMEKLCRSKRYGYLRLDGSMSVPKRSK 634

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + ++N+ +    +      + G G+NL  G N LV F   W+    Q       + R  
Sbjct: 635 IVAQFNQPESKEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPASDQ-----QALARVW 688

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G K+  FVY      TI+E + QR   K  +   +++  +    H
Sbjct: 689 RDGQKKECFVYRFQTTGTIEEKIFQRQCQKQNLSACVVDEAEDTARH 735


>gi|322791142|gb|EFZ15704.1| hypothetical protein SINV_11452 [Solenopsis invicta]
          Length = 843

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN------------------ 67
            S  +   ++ N    +  EK     +      +  I +  N                  
Sbjct: 531 FSIIIALKKICNHPNLFINEKENVLYNALSKTCMSQIKQDNNFNEYCGKVTILQTLLRNL 590

Query: 68  ---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLL 112
                 +++  ++   L  L+                          +++N       +L
Sbjct: 591 KKTDEKLVLVSYYTQTLDLLEIICDMEKLKFLRLDGSTPSSVRLKITEQFNTRTDNSKVL 650

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL  G + LV F   W+     Q + RI      + G KR V++Y L+ 
Sbjct: 651 LLSAKAGGVGLNL-PGASRLVLFDSDWNPASDMQAMARIW-----RDGQKRNVYIYRLLT 704

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
             TI+E + QR  +K+ + + +++
Sbjct: 705 TGTIEEKIYQRQISKANLSESVVD 728


>gi|330936688|ref|XP_003305493.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
 gi|311317475|gb|EFQ86421.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
          Length = 890

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 49/234 (20%)

Query: 2   KQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y            +   +I    +        ++ N        K   +   E ++++
Sbjct: 510 EAYRAILDSPTFRLAMGSSDI----ALQLINVLKKICNSPSLLKSSKDNDDTPSEMLQSI 565

Query: 60  EVII------------------------EKANAAPIIVAYHFNSDLARLQK--------- 86
             +I                               I++  ++ + L  +++         
Sbjct: 566 LPLIPNNILNSSASSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTLDMIERLLVSLSYTY 625

Query: 87  -AFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     K    ++++N+              S G GLNL  G + +V F + W+  
Sbjct: 626 LRLDGSTPASKRQALVEKFNKTPKTTSFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPA 684

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   + R  + G K    VY  + Q  +DE + QR   K  + + +++
Sbjct: 685 T-----DLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVD 733


>gi|294892047|ref|XP_002773868.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
 gi|239879072|gb|EER05684.1| chromodomain helicase dna binding protein, putative [Perkinsus
           marinus ATCC 50983]
          Length = 459

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  L+ ++         ++V       L  ++          +              
Sbjct: 162 SGKMVFLDKLLPRLMETQQKVLVFSQMTRALDVIEDYLLWKGYKYERLDGNVSGTQRQEA 221

Query: 101 IQEWNEGKIP------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           I  +N+                +      + G G+NL    N++V +   W+ +      
Sbjct: 222 IDRFNDTSSQSSHGASNKEMPWIFLLSTRAGGVGINLTA-ANVVVIYDSDWNPQNDM--- 277

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 R  + G K+ V VY LI +++ +E +      K  ++  L++ + K
Sbjct: 278 --QAQARCHRIGQKKEVKVYRLITRDSYEERMFDVASKKLGLEQALMSGVTK 327


>gi|302915751|ref|XP_003051686.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
 gi|256732625|gb|EEU45973.1| SNF2 family chromodomain-helicase DNA-binding protein [Nectria
           haematococca mpVI 77-13-4]
          Length = 1557

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEV----------- 51
           Y       Y  L        NS  +  ++  +++N    +   +                
Sbjct: 704 YKNILTRNYTALCDATNGHKNSLLNIMMELKKISNHPYMFPGAEEKVLAGSVRREDQIKG 763

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 764 LIASSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKFQRLDGTIAAGP 823

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + +V F   W+ +      +   + 
Sbjct: 824 RRMAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQAMA 877

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 878 RAHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 920


>gi|255718763|ref|XP_002555662.1| KLTH0G14498p [Lachancea thermotolerans]
 gi|238937046|emb|CAR25225.1| KLTH0G14498p [Lachancea thermotolerans]
          Length = 1436

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 39/226 (17%)

Query: 4   YHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y     + Y  L  G     F+  +   +  + +N    +D  +                
Sbjct: 607 YKNILTKNYSALSAGSKGAHFSLLNIMNELKKASNHPYLFDMAEDRVLAKFGDGKMSREN 666

Query: 51  ------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                 +   K+  L+ ++   K +   +++       L  L           +      
Sbjct: 667 ILRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLNIKGVNYQRLDGTV 726

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                  +I  +N       +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 727 PSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DL 780

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 781 QAMARAHRIGQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 826


>gi|242778005|ref|XP_002479148.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722767|gb|EED22185.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1037

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 44/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----------------------EKIKA 58
               + S      +L N     + +   +  +                        KI+ 
Sbjct: 594 NTEGAFSLLTILKKLCNSPSLLNAKTDDEPQNSTVATLLSTLSPSLRRQFSPSSSGKIRV 653

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           L+ ++     + +  I++  ++ S L                        K    + ++N
Sbjct: 654 LDQLLHNLRTSTSEKIVIVSNYTSTLNLLGVLLTSLSLPFLRLDGSTPSSKRQSLVDDFN 713

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                          + G GLNL  G + LV + + W+        +   + R  + G K
Sbjct: 714 RAPASTCFAFLLSAKAGGTGLNLT-GASRLVLYDVDWNPAT-----DLQAMARIHRDGQK 767

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  ++Y ++ +  ++E + QR  TK  + D ++ +
Sbjct: 768 RHCYIYRIMLKGALEEKIWQRQVTKIGLADSVMES 802


>gi|195577949|ref|XP_002078829.1| GD22327 [Drosophila simulans]
 gi|194190838|gb|EDX04414.1| GD22327 [Drosophila simulans]
          Length = 847

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           Q+ N    Y  +          K + L+ ++ K       +++   F   L  ++     
Sbjct: 634 QMMNKHEFYDVKIPDNLICDSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRI 693

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        ++     I ++N +  I +      + G G+NL      ++   + +
Sbjct: 694 RKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDF 752

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 753 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEK 807

Query: 200 KET 202
            E 
Sbjct: 808 GEV 810


>gi|195377834|ref|XP_002047692.1| GJ11780 [Drosophila virilis]
 gi|194154850|gb|EDW70034.1| GJ11780 [Drosophila virilis]
          Length = 1679

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 41/230 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1061 LYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGH 1120

Query: 53   -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                         K + L+ I+ K       +++       +  ++              
Sbjct: 1121 GVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLSWRQFGYLRLD 1180

Query: 91   -GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +     ++++N       +      + G GLNLQ   + +V F   W+  +    
Sbjct: 1181 GTTKAEDRGELLRKFNAKGSDYFVFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQ---- 1235

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1236 -DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1284


>gi|75759628|ref|ZP_00739713.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74492873|gb|EAO56004.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 168

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
            K   +     +     I++       L+                       +       
Sbjct: 2   NKRLEILEECRQXTGKRILIDSPLTKMLSIIGRELNRQAIPYFYLDGSTPAQERVELCDR 61

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +NEG+  L      + G GLNL  G + ++ + LWW+    Q         R  + G K 
Sbjct: 62  FNEGEGELFLISLKAGGTGLNLT-GADTVILYDLWWNPAVEQ-----QAADRAYRMGQKN 115

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V V  L+AQ TI+E + +   +K  +   ++   +++
Sbjct: 116 TVQVIKLVAQGTIEEKMHELQESKKNLIAEVIEPGEEK 153


>gi|126342880|ref|XP_001372665.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 1189

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 66/243 (27%), Gaps = 53/243 (21%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   IE  +  ++     +L +                        
Sbjct: 380 EIYRKFV--SLNHIKQLMIETRSPLAELNVLKKLCDHPRLLSARVCSLLGLKGSSLSGGD 437

Query: 42  -----YDEEKHWKEVH------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK-- 86
                + + +  +  H        K+  L  +++  +      +V       L  ++   
Sbjct: 438 ESQLVHSDIQMDQIPHDSLMQESGKVIFLMALLKRLQDEGHQTLVFSQSRKLLDIIEHLL 497

Query: 87  ----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             ++            + +        G GL L      +V F 
Sbjct: 498 KAEHFKTLRIDGTVTHLSERQRRIDLFQQSRGVSVFLLTSQVGGVGLTLTA-ATRVVIFD 556

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G K  V VY LI   T++E + +R   K ++      
Sbjct: 557 PSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLVRQTTG 611

Query: 197 ALK 199
             K
Sbjct: 612 DKK 614


>gi|294949971|ref|XP_002786396.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
 gi|239900688|gb|EER18192.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
          Length = 756

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
              +             + K    +  +N+ K    +      + G GLNL  GGN LV 
Sbjct: 538 MCQEQQWPVIRLDGSIGVKKRHSLVSTFNDPKADAFVFLLSSKAGGCGLNL-IGGNRLVM 596

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +R  + R  + G  +  ++Y L++  TI+E + QR   K ++ +L+
Sbjct: 597 FDPDWNPAN-----DRQAMARIWRDGQTKVCWIYRLLSTGTIEEKIYQRQMKKDSLSELV 651

Query: 195 LNA 197
           +  
Sbjct: 652 VQE 654


>gi|46125449|ref|XP_387278.1| hypothetical protein FG07102.1 [Gibberella zeae PH-1]
          Length = 1627

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKEV----------- 51
           Y       Y  L        NS  +  ++  +++N    +   +                
Sbjct: 698 YKNILTRNYSALCDATNGHKNSLLNIMMELKKISNHPYMFPGAEEKVLAGSVRREDQIKG 757

Query: 52  ---HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K N     +++       L  L           +          
Sbjct: 758 LIASSGKMMLLDQLLSKLNKDGHRVLIFSQMVKMLDILGDYCSLRGYKFQRLDGTIAAGP 817

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 818 RRMAINHFNADDSDDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMA 871

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 872 RAHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 914


>gi|290878090|emb|CBK39149.1| Rdh54p [Saccharomyces cerevisiae EC1118]
          Length = 924

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K+K 
Sbjct: 575 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLKV 634

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 635 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 694

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 695 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 748

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 749 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 781


>gi|159131635|gb|EDP56748.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
           A1163]
          Length = 969

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N       +                      +H+      KI+ 
Sbjct: 567 NSENALQLITILKKLCNSPSLLSPKTGDERPSETITALLSSLPPNLLRHFTPSCSAKIRL 626

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++     + +  I++  ++ S L  L                     K    ++++N
Sbjct: 627 LDQLLHNLRTSTSEKIVLVSNYTSTLNLLANLLNSLSLPFLRLDGSTPAQKRQALVEDFN 686

Query: 106 E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +         + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 687 RLPPNRCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DVQAMARIHRDGQK 740

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 741 RHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME 774


>gi|255720811|ref|XP_002545340.1| hypothetical protein CTRG_00121 [Candida tropicalis MYA-3404]
 gi|240135829|gb|EER35382.1| hypothetical protein CTRG_00121 [Candida tropicalis MYA-3404]
          Length = 1162

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFN----------SDLARLQKAFPQG 91
            +        KI+    II++     +   IIV   F                    +   
Sbjct: 971  RDNGFEPSAKIQKCIEIIQEITQANSNEKIIVFSQFTTLFDLLKLVLHYQKIPFLRYDGT 1030

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++     I+E+ +    +L     S   GL L    N ++    +W+       +E  
Sbjct: 1031 MNMESKNTVIKEFYKSDTRVLLLSLRSGNAGLTLT-CANHIIIMDPFWNP-----YVEDQ 1084

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + R  + G +R V V+ ++ + T++  +++    K  +    L+  K ++I
Sbjct: 1085 AMGRAHRIGQEREVHVHRVLIEGTVESRIMELQEHKKELIGEALDESKMKSI 1136


>gi|302682057|ref|XP_003030710.1| hypothetical protein SCHCODRAFT_57400 [Schizophyllum commune H4-8]
 gi|300104401|gb|EFI95807.1| hypothetical protein SCHCODRAFT_57400 [Schizophyllum commune H4-8]
          Length = 700

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 81/256 (31%), Gaps = 68/256 (26%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------------------- 42
            Y +F        + ++      A+  ++  ++ N    +                    
Sbjct: 354 LYDEFMSRAQTQAELQSGVYQKIANILMQLRKVCNHPDLFEVRPIVTSFAMSRSAIADYE 413

Query: 43  -----------------------------DEEKHWKEVHDEKIKALEVIIEKAN--AAPI 71
                                          +    +    K++ L  ++ +       +
Sbjct: 414 IKELLGAILRLPPDFDSSLHRAAVKLQIAFPDPFLLQFDCGKLQYLADLLREKKAGGHRV 473

Query: 72  IVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++       L  L+                  ++      + +N + ++    A   S G
Sbjct: 474 LIFTQMTRILDILEVFLNFHGYLYLRLDGATKIEDRQYVTERFNADDRVFCFIASSRSGG 533

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL  G + +VF+   ++ +     ++R    R  + G  R V +Y  ++Q+T++E +
Sbjct: 534 VGINLT-GADTVVFYDSDFNPQ-----MDRQCEDRAHRIGQIRDVHIYRFVSQHTVEEAM 587

Query: 181 LQRLRTKSTIQDLLLN 196
           L++   K ++  L++ 
Sbjct: 588 LRKANQKRSLDSLVIQ 603


>gi|198437252|ref|XP_002124935.1| PREDICTED: similar to transcription termination factor, RNA
            polymerase II [Ciona intestinalis]
          Length = 1071

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 68/241 (28%), Gaps = 65/241 (26%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------ 51
            + + + A       ++  Q         +    + +                        
Sbjct: 817  EKKKMSATTLLVMLLRLRQCCGHLHLLQDTFDPELLQKEKEEIAVEDLFQSMNIGASASS 876

Query: 52   -------------------HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKA- 87
                                  KI  +   ++    +      ++   + S L  L    
Sbjct: 877  FSSDKYSDKSKAKYFEISQPSSKITFVMDTLKKLSVEKPDDKCVIISQWTSMLNILAHHL 936

Query: 88   ---------FPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFS 136
                             K    +  +N+  +   ++     + G GLNL  GGN L    
Sbjct: 937  AAAKFSYAVIDGSVNARKRMELVDNFNKNPVKPKIMLISLQAGGVGLNL-IGGNHLFLLD 995

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + W+        E+    R  + G K+ VFV+  I + T++E +LQ    K +I   ++ 
Sbjct: 996  MHWNPAL-----EKQAFDRIYRVGQKKEVFVHKFIMEETVEEQILQLQERKLSIAKAVME 1050

Query: 197  A 197
             
Sbjct: 1051 G 1051


>gi|193204424|ref|NP_496802.2| BTAF (TBP-associated factor) homolog family member (btf-1)
            [Caenorhabditis elegans]
 gi|169402775|emb|CAB02491.2| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|169402879|emb|CAB04949.2| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|169402880|emb|CAQ16159.1| C. elegans protein F15D4.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1649

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 31/219 (14%)

Query: 6    KFQRELYCDLQGENIEAFNSAS----KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K   +    +         + +    K     QL        E +  K   +E  +  ++
Sbjct: 1380 KLVHDTLAKIGAPQYILSKALAAKSGKMEALKQL------LIECEICKNPDEEVEQPEDL 1433

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------------TLDKDPCTIQEWN-E 106
                A+    ++   + +    +  A   G                       +  +N +
Sbjct: 1434 GGLVASGHRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNED 1493

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +L       G GLNL  G + ++F    W+      M +   + R  + G  R V 
Sbjct: 1494 KTIDVLILTTHVGGVGLNLT-GADTVIFLDHDWNP-----MKDLQAIDRAHRLGQTRNVN 1547

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            VY LI Q T++E V+   + K      L+ A     + +
Sbjct: 1548 VYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTM 1586


>gi|242822858|ref|XP_002487973.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218712894|gb|EED12319.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1086

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR---------LQKAFPQGRTL 94
            K+ + ++  KI  L  ++   K N    ++   F   +           ++     GRT 
Sbjct: 903  KNQEWMNSGKIDKLCELLKKFKENGDRTLIFSQFTLVMDILEYVLETVNMRFFRLDGRTN 962

Query: 95   DKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +D   I    + +  IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 963  VEDRQAILDAFYEQTDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1016

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G  R V V  L+ + TI+E +    +TK  +   ++  
Sbjct: 1017 ENRAHRVGQTREVEVIRLVTKGTIEEQIYALGQTKLALDQRVVGD 1061


>gi|71033369|ref|XP_766326.1| DNA repair protein Rad54 [Theileria parva strain Muguga]
 gi|68353283|gb|EAN34043.1| DNA repair protein rad54, putative [Theileria parva]
          Length = 786

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 46/232 (19%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---- 56
            Y  F   R     +  + +    + S     ++L N            +V    +    
Sbjct: 395 IYKSFVTSRRWKNIMNQDTV-VSRALSAIQSLMKLCNHPFLLKRGGSSPDVDSLLLDIEN 453

Query: 57  ---------------------KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
                                  L   I +     +++  ++   L   ++   +     
Sbjct: 454 ATKSSKYKCCRCDLSGKFLVLYRLLYQIRRHGNDRVVIISNYTQTLDLFERLCKECNYPF 513

Query: 96  ----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     K    +  +N+      +      + G G+NL  G N LV F   W+   
Sbjct: 514 ERLDGTTSIKKRHKLVTTFNDPNSNSFIFLLSSKAGGCGINL-IGANRLVLFDPDWNPAN 572

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                ++  + R  + G  +  ++Y   +  TI+E + QR   K  +  +L+
Sbjct: 573 -----DKQALARVWRDGQTKVCYIYRFFSTGTIEEKIYQRQICKDGLSSMLV 619


>gi|326481296|gb|EGE05306.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 1690

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1334 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQAGGHRALIFTQMTK 1377

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1378 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1436

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1437 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1491

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1492 MLDDVVIQEGE 1502


>gi|193785791|dbj|BAG51226.1| unnamed protein product [Homo sapiens]
          Length = 793

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I  +N+       L      +   G+NL  G N +V F  
Sbjct: 104 RNISYFRLDGSTPAFERERLINRFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 162

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 163 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 217

Query: 198 LK 199
           L 
Sbjct: 218 LN 219


>gi|292630874|sp|C7GQI8|RDH54_YEAS2 RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|256271911|gb|EEU06936.1| Rdh54p [Saccharomyces cerevisiae JAY291]
          Length = 924

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K+K 
Sbjct: 575 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLKV 634

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 635 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 694

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 695 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 748

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 749 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 781


>gi|323447794|gb|EGB03704.1| hypothetical protein AURANDRAFT_5295 [Aureococcus anophagefferens]
          Length = 154

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCT 100
             K+  L+ ++ +  +    ++V   F   L  + +         +              
Sbjct: 5   SGKMVFLDKLLPRLRSEGRKVLVFSQFVRVLGLVAELCAHRGYDAEALTGATPAADRQRA 64

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N      +      + G G+NL    + +V +   W+ +      +   + R  + 
Sbjct: 65  IDRFNASPDAFVFLLSTRAGGVGINLCA-ADTVVIYDSDWNPQN-----DVQAMARCHRL 118

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           G  R V VY L+A+ + +  +L+    K  ++  ++
Sbjct: 119 GQTRDVAVYRLVARKSFEGHMLEAAARKLGLERAVM 154


>gi|326431300|gb|EGD76870.1| BTAF1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1863

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 73/247 (29%), Gaps = 58/247 (23%)

Query: 2    KQYHKFQRELYCDLQGENIEA----------FNSASKTVKCLQLANGAVYY--------- 42
            + Y  F +        + + A           +         ++ +  +           
Sbjct: 1544 RMYESFGQTSQAQAAKDVVRAGHDSGDRKGGKHIFQALNFLKRVCSHPLMVKADDVDAKV 1603

Query: 43   ------DEEKHWKEVHDEKIKALEVIIEKAN-------------AAPIIVAYHF------ 77
                           H  K+ AL  ++   +             +   ++          
Sbjct: 1604 RAHIAQHGINLHDVHHATKLAALHQLLSDCSIGVSADATAAAASSHRALIFATHKQLLSL 1663

Query: 78   -------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
                       A   +              + E+N +  + +L    +  G GLNL  G 
Sbjct: 1664 VARDLFDRHMPALTYRRLDGDTPTHMRAEVVAEFNDDPTVDVLLLTTSVGGLGLNLT-GA 1722

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F    W+      M +   + R  + G  R V VY LI +NT++E ++   R K  
Sbjct: 1723 DTVIFLEHDWNP-----MKDLQAMDRAHRIGQGRTVNVYRLITRNTLEEKIMNLQRFKLN 1777

Query: 190  IQDLLLN 196
            + + +++
Sbjct: 1778 MANTIVS 1784


>gi|123503388|ref|XP_001328501.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121911445|gb|EAY16278.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1247

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 40/234 (17%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           K Y++  F R     L+G   +  N      ++  ++ N        +        K   
Sbjct: 410 KYYYRSVFTRNTVFLLRGTEKKTPNFLMNITMELRKVCNHPYLIQGAEENIMRDLNKTGE 469

Query: 59  LEVI-------------------IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
           ++ I                           +++   F   L  +Q              
Sbjct: 470 IKTIQDGLIRSCGKMILLDKLLDRLLPEGHRVLIFSQFTLILDIIQDYLNLKGIKYVRLD 529

Query: 96  ------KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    I  ++     IP+      + G G+NL    + ++ +   W+ +     
Sbjct: 530 GNVRGPERQAAIDNFSRDGSDIPIFLLTTRAGGQGINLTA-ADTVIIYDSDWNPQN---- 584

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     R  + G  ++V VY  +  N+ +  +      K  +   +L    KE
Sbjct: 585 -DIQATARCHRIGQTKSVKVYRFLTSNSYERSMFDIASRKLGLDHAVLEGSSKE 637


>gi|16198155|gb|AAL13882.1| LD35434p [Drosophila melanogaster]
          Length = 1207

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP 89
              + +       +    +    K++ ++ ++ +   N   +++       L  L+    
Sbjct: 797 LHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLN 856

Query: 90  QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               +           +    ++ +N + +I        S G G+NL  G + ++F+   
Sbjct: 857 YHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLT-GADTVIFYDSD 915

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+       ++     R  + G  R V +Y L+++ TI+  +L++   K  + D+ +  
Sbjct: 916 WNPT-----MDAQAQDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEG 969


>gi|331222641|ref|XP_003323994.1| Chd3-PA [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309302984|gb|EFP79575.1| Chd3-PA [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1668

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 31/214 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIE 64
            + +        +  ++  +       YD E     V              K+  L   I 
Sbjct: 935  KQKKSTRAGFQNLLMQLRKTLGHPYLYDPEIEPSNVPEAQVQENLVEASAKLIFLRKFIP 994

Query: 65   K--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN--EGKIP 110
            K  A    +++   F   L                     +       I  +N       
Sbjct: 995  KLLARGHRMLIFSQFTMFLDVMERFLDGENMDYLRLDGNTSQLDRQTRIDHFNRKNSNYN 1054

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G G+NL    ++++     W+        +   ++R  + G K+ V V+ L
Sbjct: 1055 IFLLSTRAGGAGINL-ATADVVIVLDPDWNP-----HNDLQAISRAHRFGQKKPVSVFKL 1108

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + + + +E ++Q  + K  +  L++    +E I 
Sbjct: 1109 MVKGSAEEKIVQTGKRKLVLDHLVIQKASEEEIE 1142


>gi|194859366|ref|XP_001969360.1| GG23998 [Drosophila erecta]
 gi|190661227|gb|EDV58419.1| GG23998 [Drosophila erecta]
          Length = 847

 Score = 87.5 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           Q+ N    Y  +          K + L+ ++ K       +++   F   L  ++     
Sbjct: 634 QMMNKHEFYDVKIPDNLICDSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRI 693

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        ++     I ++N +  I +      + G G+NL      ++   + +
Sbjct: 694 RKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDF 752

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 753 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEK 807

Query: 200 KET 202
            E 
Sbjct: 808 GEV 810


>gi|326476006|gb|EGE00016.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 1690

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1334 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQAGGHRALIFTQMTK 1377

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1378 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1436

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1437 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1491

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1492 MLDDVVIQEGE 1502


>gi|312190395|gb|ADQ43195.1| unknown [Eutrema parvulum]
          Length = 763

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 22/182 (12%)

Query: 31  KCLQLANGAVYYDEEKHWKEVH---DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ 85
           +  QL       D +    + H     K + L  ++   K +   +++   + S L  L+
Sbjct: 564 RIHQLLFQYAVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILE 623

Query: 86  KAFPQGRTLDKD---------PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFF 135
                     +             +  +N  K I        + G GLNL  G + ++  
Sbjct: 624 WTLDVIGVTYRRLDGTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLT-GADTVIIH 682

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++ +     I+R    R  + G  + V ++ L+ ++T+DE + +  + K  +   +L
Sbjct: 683 DMDFNPQ-----IDRQAEDRCHRIGQTKPVTIF-LVTKSTVDENIYEIAKRKLVLDAAVL 736

Query: 196 NA 197
            +
Sbjct: 737 ES 738


>gi|260941370|ref|XP_002614851.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
 gi|238851274|gb|EEQ40738.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
          Length = 885

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 34/205 (16%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDEKIK-----------ALEVII 63
           E  +  S  +   ++ N       +       H  E+    +               ++ 
Sbjct: 582 ETKDVLSMILMFRKICNSPSLLHNDPLFASFLHDTELSSSPLSSRTTGSKVNVLVPLLLE 641

Query: 64  EKANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            +     +++  ++   L            +  +         +D   +         + 
Sbjct: 642 FRTVGEKVVLVSNYAQTLDFLETVLSKLNLQYCRLDGSTPAKVRDKLVLDFNKCPTHKIF 701

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL  G + L+ F   W+       ++   + R  + G  + VF+Y L  
Sbjct: 702 LLSAKAGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMARVHRYGQTKPVFIYRLFT 755

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
              IDE + QR   K+ + D+ L+ 
Sbjct: 756 TGAIDEKIFQRQLMKNNLSDMFLDE 780


>gi|118343651|ref|NP_001071646.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975391|gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
 gi|28975393|gb|AAO61782.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
          Length = 1786

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 705 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 764

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 765 LIRSSGKLILLDKLLIRLRECGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 824

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 825 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 878

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 879 RAHRIGQKKQVNIYRLVTKASVEEDILERAKKKMVLDHLVIQRM 922


>gi|67517153|ref|XP_658459.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
 gi|40746529|gb|EAA65685.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
 gi|259488860|tpe|CBF88651.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1011

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 46/233 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           K Y           QG    + ++        +L N       +                
Sbjct: 559 KIYQNVLASPV--FQGALGNSESALQLITILKKLCNSPSLLSLKDANEKPSETIAAILSS 616

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                 +H+      KI+ L+ ++     + +  +++  ++ S L  L            
Sbjct: 617 LPPNLLRHFSPSCSAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLPFL 676

Query: 91  ----GRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    K    ++++N               + G GLNL  G + LV F + W+   
Sbjct: 677 RLDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT 735

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                +   + R  + G K    +Y ++ Q +++E + QR  TK  + D ++ 
Sbjct: 736 -----DIQAMARIHRDGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVME 783


>gi|24583161|ref|NP_609320.2| CG5899, isoform A [Drosophila melanogaster]
 gi|7297570|gb|AAF52824.1| CG5899, isoform A [Drosophila melanogaster]
          Length = 844

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           Q+ N    Y  +          K   L+ ++ K  A    +++   F   L  ++     
Sbjct: 631 QMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRI 690

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        ++     I ++N +  I +      + G G+NL      ++   + +
Sbjct: 691 RKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDF 749

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 750 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEK 804

Query: 200 KET 202
            E 
Sbjct: 805 GEV 807


>gi|221488861|gb|EEE27075.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 1168

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 60/176 (34%), Gaps = 23/176 (13%)

Query: 33   LQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---- 84
             Q++ G          KE+     KI+ +  ++ +        ++   + + L  +    
Sbjct: 966  QQISQGDSRLAHLSLPKEMIMDSAKIRKMIELVSEIKKKGEKALIFSQYTTYLDVVEESL 1025

Query: 85   --------QKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +        ++     + ++     + +      + G GLNL      ++  
Sbjct: 1026 TTFCGDIGKCRLDGSTAVEDRQALVDDFSTNPDLTIFLLSTKAGGQGLNLTA-ARTVILM 1084

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               W+ +      +R    R  + G  + V +Y L  + T++E +L+  + K  + 
Sbjct: 1085 DQDWNPQN-----DRQAEDRVHRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDLD 1135


>gi|237837185|ref|XP_002367890.1| SNF2 family helicase, putative [Toxoplasma gondii ME49]
 gi|211965554|gb|EEB00750.1| SNF2 family helicase, putative [Toxoplasma gondii ME49]
 gi|221509350|gb|EEE34919.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1167

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 60/176 (34%), Gaps = 23/176 (13%)

Query: 33   LQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL---- 84
             Q++ G          KE+     KI+ +  ++ +        ++   + + L  +    
Sbjct: 965  QQISQGDSRLAHLSLPKEMIMDSAKIRKMIELVSEIKKKGEKALIFSQYTTYLDVVEESL 1024

Query: 85   --------QKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +        ++     + ++     + +      + G GLNL      ++  
Sbjct: 1025 TTFCGDIGKCRLDGSTAVEDRQALVDDFSTNPDLTIFLLSTKAGGQGLNLTA-ARTVILM 1083

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               W+ +      +R    R  + G  + V +Y L  + T++E +L+  + K  + 
Sbjct: 1084 DQDWNPQN-----DRQAEDRVHRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDLD 1134


>gi|85724914|ref|NP_001033890.1| CG5899, isoform C [Drosophila melanogaster]
 gi|84795289|gb|ABC65886.1| CG5899, isoform C [Drosophila melanogaster]
          Length = 831

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 20/183 (10%)

Query: 34  QLAN-GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
           Q+ N    Y  +          K   L+ ++ K  A    +++   F   L  ++     
Sbjct: 618 QMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRI 677

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        ++     I ++N +  I +      + G G+NL      ++   + +
Sbjct: 678 RKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDF 736

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 737 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEK 791

Query: 200 KET 202
            E 
Sbjct: 792 GEV 794


>gi|50308703|ref|XP_454355.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690158|sp|Q6CNY4|INO80_KLULA RecName: Full=Putative DNA helicase INO80
 gi|49643490|emb|CAG99442.1| KLLA0E08999p [Kluyveromyces lactis]
          Length = 1489

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++ K       +++ +     +  +++     +              +   
Sbjct: 1318 SAKLKKLDELLVKLKEEDHRVLIYFQMTKMMDLMEEYLTYRQYTHIRLDGSSKLDDRRDL 1377

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1378 VHDWQTKPDIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1431

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1432 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEGKAKE 1473


>gi|212533393|ref|XP_002146853.1| dsDNA-dependent ATPase (Rad54b), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072217|gb|EEA26306.1| dsDNA-dependent ATPase (Rad54b), putative [Penicillium marneffei
           ATCC 18224]
          Length = 1054

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 44/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDE----------------------EKHWKEVHDEKIKA 58
               + S      +L N                              + +      KI+ 
Sbjct: 593 NTEGAFSLLTVLKKLCNSPSLLTAKAGDEPPNATMEALLSTLTPSLRRQFSPSSSGKIRV 652

Query: 59  LEVIIEKAN---AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           L+ ++       +  I++  ++ S L  L                     K    + ++N
Sbjct: 653 LDQLLHNLQTTTSEKIVLVSNYTSTLNLLGILLTSLSLPFLRLDGSTPSAKRQSLVDDFN 712

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                K         + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 713 RAPASKCFAFLLSAKAGGTGLNLT-GASRLVLFDVDWNPAT-----DLQAMARIHRDGQK 766

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  ++Y ++ +  ++E + QR  TK  + D ++ +
Sbjct: 767 RHCYIYRIMLKGALEEKIWQRQVTKIGLADSVMES 801


>gi|73986608|ref|XP_867733.1| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a4 isoform 8
            [Canis familiaris]
          Length = 1593

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 66/204 (32%), Gaps = 34/204 (16%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWK--------------EVHDEKIKALEVIIEK-- 65
                 +  ++  ++ N    +   +                      K + L+ I+ K  
Sbjct: 1013 TKTLMNTIMQLRKICNHPYMFQHIEQCVASLWPQSHCGSLDLYRASGKFELLDRILPKLR 1072

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI--PLLF 113
            A    +++     S +  ++  F                +     ++ +NE      +  
Sbjct: 1073 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1132

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNLQ   + ++ F   W+  +     +     R  + G +  V V  L   
Sbjct: 1133 LSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQQNEVRVLRLCTV 1186

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            N+++E +L   + K  +   ++ A
Sbjct: 1187 NSVEEKILAAAKYKLNVDQKVIQA 1210


>gi|302664731|ref|XP_003023992.1| hypothetical protein TRV_01854 [Trichophyton verrucosum HKI 0517]
 gi|291188017|gb|EFE43374.1| hypothetical protein TRV_01854 [Trichophyton verrucosum HKI 0517]
          Length = 1692

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 35/191 (18%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 1336 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQAGGHRALIFTQMTK 1379

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S G G+NL  G
Sbjct: 1380 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNNDTRILAFILSSRSGGLGINLT-G 1438

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K 
Sbjct: 1439 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKR 1493

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1494 MLDDVVIQEGE 1504


>gi|169606802|ref|XP_001796821.1| hypothetical protein SNOG_06450 [Phaeosphaeria nodorum SN15]
 gi|160707083|gb|EAT86281.2| hypothetical protein SNOG_06450 [Phaeosphaeria nodorum SN15]
          Length = 1598

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 31/212 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKALEV------------IIE 64
            +  E  N ++  ++  +       Y  E +   EV     + L                 
Sbjct: 892  KQQERANLSNILMQLRKCLCHPFVYSREIEERTEVAAVSHRNLVEASAKLSLLELLLPKL 951

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
            K     +++   F   L  ++          +              I ++N    PL   
Sbjct: 952  KERGHRVLIFSQFLDMLNIVEDFLDGMEMAYQRLDGQMGSLEKQKRIDQFNAPDSPLFAF 1011

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     W+  +     +   + R  + G K  V  + L+ 
Sbjct: 1012 LLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DLQAIARAHRIGQKNKVLCFQLMT 1065

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            +++++E ++Q  R K  +  +++  L  + I 
Sbjct: 1066 RSSVEEKIIQMGRKKMALDHVVVEQLDADDIE 1097


>gi|302786754|ref|XP_002975148.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
 gi|300157307|gb|EFJ23933.1| hypothetical protein SELMODRAFT_102849 [Selaginella moellendorffii]
          Length = 1017

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 4   YHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKI 56
           Y +  +      L G   +     +  ++  +  N    +  + +             K 
Sbjct: 588 YQQMIESRRVGLLTGSGKKQVGLQNTVMQLRKCCNHPYLFLNKDYEPRDRDEIIRASGKF 647

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
           + L+ ++ K       +++       +  L+                   +     +Q +
Sbjct: 648 ELLDRLLPKLQKTGHRVLLFSQMTRLMDLLEMYLTTRGFTYLRLDGTTKTEDRGKKLQMF 707

Query: 105 NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N    P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K
Sbjct: 708 NAEDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQK 761

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 762 KEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|118373098|ref|XP_001019743.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89301510|gb|EAR99498.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1254

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKALEVIIEKA 66
           + G   +     +  ++  ++ N    +                 +  K+  L+ +++K 
Sbjct: 417 ITGSEDDKKFYLNILMQLRKVCNHPYLFEGIEEEGLPPLGEHIITNCGKMMVLDKLLQKL 476

Query: 67  NAAPI--IVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIP-LLFAH 115
                  ++       L                     D+D        E     +    
Sbjct: 477 KNGKHQVLIFSQMTMVLEDYCNYRQFKYCRIDGNTDMTDRDNQISDFVKEDSTKYIFLLS 536

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + +V +   W+ +     ++   + R  + G K  V VY LI++NT
Sbjct: 537 TRAGGLGINL-ATADTVVLYDSDWNPQ-----MDLQAMDRAHRIGQKNIVNVYRLISENT 590

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           I+E +++R   K     L++   +
Sbjct: 591 IEEKIIERQTIKLKWDQLIIQQGR 614


>gi|50547625|ref|XP_501282.1| YALI0C00363p [Yarrowia lipolytica]
 gi|49647149|emb|CAG81577.1| YALI0C00363p [Yarrowia lipolytica]
          Length = 1320

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 78/232 (33%), Gaps = 47/232 (20%)

Query: 6   KFQRELYCDLQGENIEAFNS----------ASKTVKCLQLANGAVYYDEEKHW------- 48
             Q++ Y ++  +N  A N+           +   +  + +N    +   +         
Sbjct: 539 DMQQDYYKNIISKNYTALNAGATGGHQMSLLNIMTELKKASNHPYLFPTAESKFLSLAEN 598

Query: 49  ----------KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                       +   K+  L+ ++ +   +   +++       L  L           +
Sbjct: 599 GASRENVFRGMIMTSGKMVLLDKLLTQLKKDGHRVLIFSQMVRMLDILGDYLQIKGYQFQ 658

Query: 97  D----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                         I  +N       +      + G G+NL    + ++ F   W+ +  
Sbjct: 659 RLDGTVPSATRRIAIDHYNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA- 716

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +   + R  + G K  V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 717 ----DLQAMARAHRIGQKNHVMVYRFVSKDTVEEQVLERARKKMILEYAIIS 764


>gi|219123447|ref|XP_002182036.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406637|gb|EEC46576.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 545

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 55/247 (22%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----------------- 43
            Y      +++   L G+ +   +S    +K    AN                       
Sbjct: 282 MYQHLVNSKDMQHVLDGKQVNCLSSIQMLMKL---ANHPSLASMAAPGADGIAKFLPYVP 338

Query: 44  --------EEKHWKEVHDEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQKAFPQ 90
                   +    +     K+  L  ++++          I++  ++   L  + +   +
Sbjct: 339 GEGGGRRGDFAPVRPEWSGKMFVLYRLMKEMRKPGNGNDKIVIVSNYTQTLDLIGRMCRE 398

Query: 91  ----------GRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLW 138
                       T+ K      E+N+   PL        + G GLNL  GGN LV F   
Sbjct: 399 NSWGFCRLDGSITMKKRQKMCDEFNDPNSPLVAFLLSSKAGGCGLNL-IGGNRLVLFDPD 457

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+       +++    R  + G K+  F Y  +A  T++E + QR  +K  +Q ++    
Sbjct: 458 WNPA-----VDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVV--DD 510

Query: 199 KKETIHV 205
           K++T  +
Sbjct: 511 KEQTNQL 517


>gi|189209013|ref|XP_001940839.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976932|gb|EDU43558.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 893

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 49/234 (20%)

Query: 2   KQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y            +   +I    +        ++ N        K   +   E ++++
Sbjct: 513 EAYRAVLDSPTFRLAMGSSDI----ALQLINVLKKICNSPSLLKSSKDNDDTPSEMLQSI 568

Query: 60  EVII------------------------EKANAAPIIVAYHFNSDLARLQK--------- 86
             +I                               I++  ++ + L  +++         
Sbjct: 569 LPLIPNNILNSSASSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTLDMIERLLVSLSYTY 628

Query: 87  -AFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     K    ++++N+              S G GLNL  G + +V F + W+  
Sbjct: 629 LRLDGSTPASKRQALVEKFNKTPKTTSFAFLLSAKSGGVGLNL-IGASRIVLFDIDWNPA 687

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   + R  + G K    VY  + Q  +DE + QR   K  + + +++
Sbjct: 688 T-----DLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLANAVVD 736


>gi|168062755|ref|XP_001783343.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162665144|gb|EDQ51838.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2174

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 49/236 (20%)

Query: 3    QYHKF----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
             Y K      ++    L        +  +  ++   + N            E        
Sbjct: 1728 AYQKLLMKHVKDKMKSLNHAK--GRSIQNTVMELRNICNHPYLSQLHSEETEKVLPPHYL 1785

Query: 52   -----HDEKIKALEVIIEK-------------ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
                    K++ L+ I+ K                  ++        L  ++        
Sbjct: 1786 PIVVRFCGKLEMLDRILPKLKAANHKVSLMTSRKGHSVLFFSTMTRLLDVMEDYLEWKGY 1845

Query: 94   LD----------KDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        +    IQ++N  +    +      + G G+NLQ   + ++ F   W+ 
Sbjct: 1846 KYLRLDGSTGGSERGALIQDFNAPQSEAFIFLLSIRAGGIGINLQA-ADTVIIFDTDWNP 1904

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     ++     R  + G KR V V       +I+E V      K  + +  + A
Sbjct: 1905 Q-----VDLQAQARAHRIGQKRDVLVLRFETVKSIEEHVRASAEYKLGVANQSITA 1955


>gi|85014197|ref|XP_955594.1| DNA repair and recombination protein [Encephalitozoon cuniculi
           GB-M1]
 gi|19171288|emb|CAD27013.1| RAD26-LIKE DNA REPAIR AND RECOMBINATION PROTEIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 695

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 53/239 (22%)

Query: 1   MKQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           ++ Y++    + +   L G+     N  S      ++ N        K            
Sbjct: 387 IELYNRVLESKHIMKVLTGK----ANLLSGISMLRKVCNHPRLLFPRKLGVSEDCEEEAS 442

Query: 53  ------------------------DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK 86
                                     KIK L  ++   ++    ++V       L  +++
Sbjct: 443 DEKNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKWRSEGNKVLVFSQTIRMLDIIER 502

Query: 87  A--------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                              P  +  +N +  + L        G GLNL  G + +V +  
Sbjct: 503 CVRKYTYLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLT-GASRIVIYDP 561

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+        +     R  + G K+ V +Y  + ++TI+E V Q+   K  +   +L+
Sbjct: 562 DWNPST-----DTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKKVLS 615


>gi|326481938|gb|EGE05948.1| dsDNA-dependent ATPase [Trichophyton equinum CBS 127.97]
          Length = 1004

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 533 NSESTLQLITILKKVCNSPSLLKPKVEDNGKGEDSSMSAFISSLPPNIHRCLAAGSSGKI 592

Query: 57  KALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++    +     +++  ++ S L  L                     K    +++
Sbjct: 593 RVLDQLLYNLQSKTTEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPATKRQALVED 652

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 653 FNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 706

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 707 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 742


>gi|321257722|ref|XP_003193686.1| DNA recombination and repair protein Rad54B [Cryptococcus gattii
           WM276]
 gi|317460156|gb|ADV21899.1| DNA recombination and repair protein Rad54B, putative [Cryptococcus
           gattii WM276]
          Length = 818

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           ++ +   I+      I++  +    L  ++K                ++ K    + ++N
Sbjct: 581 LERMLDHIKHHTNDKIVLISNATQTLDLMEKLCRSKRYGYLRLDGSMSVPKRSKIVAQFN 640

Query: 106 EGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +    +      + G G+NL  G N LV F   W+    Q       + R  + G K+
Sbjct: 641 QPESKEFVFLLSSKAGGCGINL-IGANRLVLFDPDWNPASDQ-----QALARVWRDGQKK 694

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             FVY      TI+E + QR   K  +   +++  +    H
Sbjct: 695 ECFVYRFQTTGTIEEKIFQRQCQKQNLSACVVDEAEDTARH 735


>gi|145335288|ref|NP_172336.3| ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
 gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
 gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1479

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 96   KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    +  +NE    ++        +   G+NL Y  N ++     W+        +   
Sbjct: 1181 ERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNPT-----YDLQA 1234

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++         K+E +H+
Sbjct: 1235 IFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHL 1294


>gi|9802554|gb|AAF99756.1|AC003981_6 F22O13.8 [Arabidopsis thaliana]
          Length = 1471

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 96   KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    +  +NE    ++        +   G+NL Y  N ++     W+        +   
Sbjct: 1177 ERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNPT-----YDLQA 1230

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++         K+E +H+
Sbjct: 1231 IFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHL 1290


>gi|330443433|ref|NP_009629.4| Rdh54p [Saccharomyces cerevisiae S288c]
 gi|329136720|tpg|DAA07193.2| TPA: Rdh54p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K+K 
Sbjct: 609 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLKV 668

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 669 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 728

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 729 RNPAIFGFLLSAKSGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 782

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 783 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 815


>gi|330845465|ref|XP_003294605.1| hypothetical protein DICPUDRAFT_4822 [Dictyostelium purpureum]
 gi|325074901|gb|EGC28868.1| hypothetical protein DICPUDRAFT_4822 [Dictyostelium purpureum]
          Length = 1004

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 76/226 (33%), Gaps = 39/226 (17%)

Query: 7   FQRELYCDLQGENIEAF------------NSASKTVKCLQLANGAVYY-------DEEKH 47
            Q++ Y  L  ++IEA                +  ++  +  N    +            
Sbjct: 397 MQKDWYKRLLTKDIEAVMNPGSKGQAARVRLLNICMQLRKACNHPYLFDGAEEEPYTTGE 456

Query: 48  WKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
               +  K+  L+ +++K     + +++       L  L+                    
Sbjct: 457 HLITNSGKMVLLDKLLKKLQERGSRVLIFSQMARMLDILEDYMLYRNYRYARIDGSTDSV 516

Query: 96  KDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               +I  +N+    L        + G G+ L    ++++ F   W+ +     ++    
Sbjct: 517 SRENSIDNFNKPGSELFAFLLTTRAGGLGITL-NTADVVILFDSDWNPQ-----MDLQAQ 570

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G  + V VY  + + +++E ++++   K  +  L++   +
Sbjct: 571 DRAHRIGQTKPVTVYRFVTEASMEEKMVEKAEMKLQLDALVIQQGR 616


>gi|156847192|ref|XP_001646481.1| hypothetical protein Kpol_1048p54 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117158|gb|EDO18623.1| hypothetical protein Kpol_1048p54 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1902

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 74/254 (29%), Gaps = 65/254 (25%)

Query: 2    KQYHKF--QRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            + Y  F  +++   +       +     +         +L N       E H +      
Sbjct: 1574 QLYKDFANKQKNVVEKDIQNTADVENKQHIFQALQYMRKLCNHPSLILSENHPQLKQVDE 1633

Query: 51   ------------VHDEKIKALEVIIEKA----------------------NAAPIIVAYH 76
                        V+  K+ AL  ++ +                       +    ++   
Sbjct: 1634 YLKQTGLGLHDIVNAPKLGALRNLLFECGIGEDDMDKKSTDQLVPSNTVISQHRALIFCQ 1693

Query: 77   FNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
                L                                ++++N +  I  L       G G
Sbjct: 1694 LKDMLDLVENDLFKKYMPSVTYMRLDGSVDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLG 1753

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL  G + ++F    W+      M +   + R  + G K+ V VY +I + T++E ++ 
Sbjct: 1754 LNLT-GADTVIFIEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMG 1807

Query: 183  RLRTKSTIQDLLLN 196
              + K  I   ++N
Sbjct: 1808 LQKFKMNIASTVVN 1821


>gi|156840700|ref|XP_001643729.1| hypothetical protein Kpol_1009p17 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114352|gb|EDO15871.1| hypothetical protein Kpol_1009p17 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1515

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 16/204 (7%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            K Y +  R +  +        F+    + K  Q              KEV  +      V
Sbjct: 1310 KDYEEQVRNMKYNSNKLITIDFSKLEMSTKIKQC---------IAVIKEVFSKSSTEKIV 1360

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI-QEWNEGKIPLLFAHPASCG 120
            I  +      I+ Y    +L      +       +    +   +      +L     +  
Sbjct: 1361 IFSQFITFFSILDYFLKKELNIETFQYDGSMNAQQRSDVLSDFYKSSSTRVLLISMKAGN 1420

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GL L    N ++    +W+       +E     R  +    + V +Y L  +N++++ +
Sbjct: 1421 SGLTLT-CANHVIIVDPFWNP-----YVEEQAQDRCYRISQTKTVQIYRLFIKNSVEDRI 1474

Query: 181  LQRLRTKSTIQDLLLNALKKETIH 204
             +    K  + D  ++  K + ++
Sbjct: 1475 KELQDRKKKMVDAAMDPRKMKEVN 1498



 Score = 35.1 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 5/93 (5%), Positives = 24/93 (25%), Gaps = 6/93 (6%)

Query: 5    HKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIKAL 59
             +  ++    L  + +     +  +  ++  Q    +      +   E   + + K    
Sbjct: 1138 EQVNKKKVQKLLSKKVKGNYSSILTLLLRLRQACCHSELVVIGEKKAEALKLVNGK-NYE 1196

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
            +  +   N    +      + +  +        
Sbjct: 1197 KDWLRYFNRIKGMSISCRENVIYSMDMMTCFWC 1229


>gi|150865881|ref|XP_001385272.2| helicase [Scheffersomyces stipitis CBS 6054]
 gi|149387137|gb|ABN67243.2| helicase [Scheffersomyces stipitis CBS 6054]
          Length = 809

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 36/212 (16%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------HDEKI 56
           +         + +      +L N      E+  + ++                     KI
Sbjct: 459 MNDSASTTTQAFTLINLFKKLCNSPSLLLEDNFFSKLIKGEKEEIELLNKNTLTTSSGKI 518

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW 104
             L  ++ +       I++  ++   L  L+                   +     + ++
Sbjct: 519 NILIPLLLEITSFNEKIVLVSNYTKTLDLLEAVLKKLDLSFLRLDGSTAKNLRNKLVNQF 578

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+  I +      S G GLNL  G + L+ F   W+       ++   ++R  + G  R 
Sbjct: 579 NKSNINVFLLSSKSGGMGLNL-VGASRLILFDNDWNPS-----VDLQSMSRIHRDGQTRP 632

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            F+Y ++   TIDE + QR   KS +    L+
Sbjct: 633 CFIYRILTTGTIDEKIFQRQLMKSKLSSKFLD 664


>gi|212529122|ref|XP_002144718.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
 gi|210074116|gb|EEA28203.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1043

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
              KI+AL  I+  +A     IV   F   L +++    +            R   ++  
Sbjct: 804 PSTKIRALIRILRKEAPEYKFIVFSVFTQMLDKIEPFLKRANLGYARYDGSMRNDLREAS 863

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             Q  N     +L     +   GLNL    + +V    +W+       +E   + R  + 
Sbjct: 864 LEQLRNRSSTRVLLCSLRAGALGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRL 917

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V +Y +  +NT++E ++     K  + +  +  
Sbjct: 918 NQTIDVKIYKITVKNTVEERIIDLQERKRELANATIEG 955



 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y++ +    R L   + G  ++  ++    ++  Q  N     
Sbjct: 562 YNRLEQRTDRRLSQMMGGSKLDYASALVMLLRLRQACNHPDLV 604


>gi|74189356|dbj|BAE22708.1| unnamed protein product [Mus musculus]
          Length = 517

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 130 LYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYS 189

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 190 NGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRL 249

Query: 91  --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++++NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 250 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ--- 305

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 306 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 354


>gi|119612120|gb|EAW91714.1| hCG2009220, isoform CRA_d [Homo sapiens]
          Length = 499

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 145 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 203

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 204 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 263

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 264 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 322

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 323 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 377

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 378 CGAVVDLTK 386


>gi|302791571|ref|XP_002977552.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
 gi|300154922|gb|EFJ21556.1| hypothetical protein SELMODRAFT_176282 [Selaginella moellendorffii]
          Length = 1032

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 4   YHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKI 56
           Y +  +      L G   +     +  ++  +  N    +  + +             K 
Sbjct: 588 YQQMIESRRVGLLTGSGKKQVGLQNTVMQLRKCCNHPYLFLNKDYEPRDRDEIIRASGKF 647

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
           + L+ ++ K       +++       +  L+                   +     +Q +
Sbjct: 648 ELLDRLLPKLQKTGHRVLLFSQMTRLMDLLEMYLTTRGFTYLRLDGTTKTEDRGKKLQMF 707

Query: 105 NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N    P         + G GLNLQ   + ++ F   W+ +     +++    R  + G K
Sbjct: 708 NAEDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHRIGQK 761

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + V V+ L++  +I+E +L+R ++K  I   ++ A
Sbjct: 762 KEVHVFVLVSVGSIEEEILERAKSKMGIDAKVIQA 796


>gi|159489044|ref|XP_001702507.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280529|gb|EDP06286.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 533

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 40/222 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------------------ 48
            Q +    +           S      +L N      +                      
Sbjct: 286 LQSKAARRVLNAGKTTSGVLSAITSLKKLCNHPKLIYDAAAAAAAGEDGEGKIEGFEVGP 345

Query: 49  ----KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTL 94
                      +  +  ++       I++  ++ S L        +            T+
Sbjct: 346 AEGAVGGKMAVLARMLHVLYTETTDRIVLVSNYTSTLDLFVALCRERGYPFVRLDGTTTI 405

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +K    ++ +N+             + G GLNL  G N LV F   W+        +   
Sbjct: 406 NKRQKLVKVFNDPVEKQFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAN-----DAQA 459

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G ++ VFVY  ++  +I+E V QR  +K  ++ L+
Sbjct: 460 AARVWRDGQRKRVFVYRFLSTGSIEEKVFQRQMSKEGLKQLV 501


>gi|308807292|ref|XP_003080957.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
 gi|116059418|emb|CAL55125.1| DNA repair protein RAD54-like (ISS) [Ostreococcus tauri]
          Length = 816

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 50  EVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
           E H  K   L  ++          I++  ++   L  + +   +          G T+ K
Sbjct: 539 EEHSGKFAVLARLLANLRSETKDRIVIISNYTQTLDLIAQMCIERHYPFVRLDGGTTIGK 598

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++E+N+      +      + G G+NL  GGN LV F   W+        ++    
Sbjct: 599 RQKLVKEFNDPTSNSFVFLLSSKAGGCGINL-IGGNRLVLFDPDWNPAN-----DKQAAA 652

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R  + G K+  ++Y  +A  TI+E V QR  +K ++Q+++
Sbjct: 653 RCWRDGQKKKCYLYRFLAAGTIEEKVFQRQLSKESLQNVV 692


>gi|257468947|ref|ZP_05633041.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 915

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y  +       G     F       +  Q+ +       E     V   K
Sbjct: 695 KLYEERRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITS-----CPEAKSNGVTSSK 749

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTLDKDPCTIQEW 104
            + L   I +   N   ++V  ++         DL R    +    G T D+     +  
Sbjct: 750 REVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRFQ 809

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 810 KDNKYKVFIMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 863

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y LI ++TI+E +LQ   TKS + D L++ 
Sbjct: 864 VFSYKLILKDTIEEKILQLQDTKSKLLDNLISE 896


>gi|322701089|gb|EFY92840.1| chromo domain-containing protein 1 [Metarhizium acridum CQMa 102]
          Length = 1663

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y       Y  L        NS  +  ++  +++N    +   +                
Sbjct: 725 YKNILTRNYSALCDATGGHKNSLLNIMMELKKISNHPYMFPGAEERVLAGSVRREDQIKG 784

Query: 51  --VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 785 LITSSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKFQRLDGTIAAGP 844

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 845 RRMAINHFNADDSEDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMA 898

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 899 RAHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 941


>gi|324500543|gb|ADY40253.1| ATP-dependent helicase brm [Ascaris suum]
          Length = 1261

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 80/225 (35%), Gaps = 36/225 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD----EEKHWKEVHD----- 53
            Y   Q+ +   +    I     A+  ++  +L N    +     E +++ +V +     
Sbjct: 737 LYQHMQKGVL--IDSNRIGGRLLANTAMQLRKLCNHPFLFQSIEEECRNYWKVPEISGRD 794

Query: 54  -----EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K + L+ I+ K       +++     S ++ ++      +              
Sbjct: 795 LYRVGGKFELLDRILLKLKVTGHRLLMFCQMTSLMSIMEDFLIYRQYRYLRLDGNTKSDD 854

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N  +    +      S G GLNLQ   + +V F   W+  +     ++   +
Sbjct: 855 REKLLDLYNAPQSEYFIFLLSTRSGGIGLNLQS-ADTVVIFDSDWNPHQ-----DKQAES 908

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G  R V V  LI  N+I+E +    + K  I   ++ A +
Sbjct: 909 RAHRIGQSREVRVLRLITVNSIEEKIQATAKCKLDIDKKVIQAGR 953


>gi|330906673|ref|XP_003295556.1| hypothetical protein PTT_01652 [Pyrenophora teres f. teres 0-1]
 gi|311333059|gb|EFQ96347.1| hypothetical protein PTT_01652 [Pyrenophora teres f. teres 0-1]
          Length = 1167

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 21/203 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIE 64
             + E + +   + I       +  +C QLA+   A+   E K  + +   K+  L  +++
Sbjct: 902  LKEETFAESNPDIIYEELELYQDYQCHQLASKYHALKKFELKDHEWMDSGKVAKLLALLK 961

Query: 65   KA--NAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPL 111
            K   N    +V   F S          D             + +    +   + +  I L
Sbjct: 962  KYKENGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIQERQSLMDVFYQDESIQL 1021

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  S G G+NL    N ++ F   ++ ++     +     R  + G  R V V  L+
Sbjct: 1022 FMISTKSGGAGINL-ACANKVIIFDSSFNPQD-----DIQAENRAHRVGQTREVEVVRLV 1075

Query: 172  AQNTIDELVLQRLRTKSTIQDLL 194
             ++T++E +     +K  +  ++
Sbjct: 1076 TKDTVEEQIYALGVSKLELDKMV 1098


>gi|149236886|ref|XP_001524320.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146451855|gb|EDK46111.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1082

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 40/222 (18%)

Query: 2    KQY-HKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y  +      +R        + I   +   +  K              +        K
Sbjct: 862  KLYIQQMDVAEVERHCRVYYAKKQISNISIIKELTK--------------RDQGFEASAK 907

Query: 56   IKALEVIIEK----ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTI 101
            I+    +I        +  II+   F             L  L   +    T++     I
Sbjct: 908  IEKAIELINNIQQANPSEKIIIFSQFTTLFDLMKLVLDHLKILHLRYDGSMTVEAKNNVI 967

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +++ +    +L     +   GL L    N ++    +W+       +E   + R  + G 
Sbjct: 968  KQFYQSNCNVLLLSLRAGNVGLTLT-CANHVIIMDPFWNP-----FVEEQAMDRAHRIGQ 1021

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            ++ V V+ ++  NT++  +++    K  +    LN  + ++I
Sbjct: 1022 EKEVHVHRVLITNTVESRIMELQERKKELIGDALNENEMKSI 1063


>gi|26324980|dbj|BAC26244.1| unnamed protein product [Mus musculus]
          Length = 1240

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 380 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQD 437

Query: 43  ----DEEKHWKEVH----------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
               ++  +   +             K+  L  ++E  +      +V       L  +++
Sbjct: 438 ENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIER 497

Query: 87  AFPQGRTLD-----------KDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                               +    IQ      +  +        G GL L      +V 
Sbjct: 498 LLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTA-ATRVVI 556

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 557 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 611

Query: 195 LNALK 199
               K
Sbjct: 612 TGEKK 616


>gi|27414501|ref|NP_666347.2| DNA excision repair protein ERCC-6-like [Mus musculus]
 gi|81873794|sp|Q8BHK9|ERC6L_MOUSE RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|22902399|gb|AAH37660.1| Excision repair cross-complementing rodent repair deficiency
           complementation group 6 - like [Mus musculus]
 gi|27368137|gb|AAN87172.1| excision repair cross-complementing rodent repair deficiency
           complementation group 6 C-like [Mus musculus]
 gi|123229764|emb|CAM24634.1| excision repair cross-complementing rodent repair deficiency
           complementation group 6-like [Mus musculus]
          Length = 1240

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 380 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQD 437

Query: 43  ----DEEKHWKEVH----------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
               ++  +   +             K+  L  ++E  +      +V       L  +++
Sbjct: 438 ENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIER 497

Query: 87  AFPQGRTLD-----------KDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                               +    IQ      +  +        G GL L      +V 
Sbjct: 498 LLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTA-ATRVVI 556

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 557 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 611

Query: 195 LNALK 199
               K
Sbjct: 612 TGEKK 616


>gi|302659152|ref|XP_003021270.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
 gi|291185160|gb|EFE40652.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
          Length = 922

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 46/216 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV------------------------HDEKI 56
            + ++        ++ N       +                                 KI
Sbjct: 533 NSESALQLITILKKVCNSPSLLKPKVEDNGKGEDTSMSALLSSLPPNIHRSLAAGSSGKI 592

Query: 57  KALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
           + L+ ++          +++  ++ S L  L                     K    +++
Sbjct: 593 RVLDQLLYNLQSKTKEKVVLVSNYTSTLNLLANLLTSLDLPFLRLDGSTPATKRQALVED 652

Query: 104 WN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N               + G GLNL  G + LV F + W+        +   + R  + G
Sbjct: 653 FNRSPSSSCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDG 706

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            KR   +Y L+ +  I+E + QR  TK  + D ++ 
Sbjct: 707 QKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMG 742


>gi|221502667|gb|EEE28387.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            VEG]
          Length = 2103

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVI 62
             QR LY  ++G  +      ++ V+  ++ N    +    +  +        K   L+V+
Sbjct: 1527 VQRYLYKMIEGNPVGQ----NRMVQLRKICNHPYLFCYSSYTPDESLVRCCGKFAMLDVL 1582

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GK 108
            +   K     +++       L  L+               G + ++    +  +N+   +
Sbjct: 1583 LPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLSLYNQEGSE 1642

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +      +    +R  + G K+ V   
Sbjct: 1643 YFIFILSTKAGGLGVNLQS-ADTVIIFDSDWNPQN-----DEQAQSRAHRIGQKKEVLTL 1696

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              I+  +I+E +LQR   K     L++ +
Sbjct: 1697 RFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|221485125|gb|EEE23415.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            GT1]
          Length = 2103

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVI 62
             QR LY  ++G  +      ++ V+  ++ N    +    +  +        K   L+V+
Sbjct: 1527 VQRYLYKMIEGNPVGQ----NRMVQLRKICNHPYLFCYSSYTPDESLVRCCGKFAMLDVL 1582

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GK 108
            +   K     +++       L  L+               G + ++    +  +N+   +
Sbjct: 1583 LPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLSLYNQEGSE 1642

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +      +    +R  + G K+ V   
Sbjct: 1643 YFIFILSTKAGGLGVNLQS-ADTVIIFDSDWNPQN-----DEQAQSRAHRIGQKKEVLTL 1696

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              I+  +I+E +LQR   K     L++ +
Sbjct: 1697 RFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|237842499|ref|XP_002370547.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            ME49]
 gi|211968211|gb|EEB03407.1| transcription regulatory protein SNF2, putative [Toxoplasma gondii
            ME49]
          Length = 2668

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVI 62
             QR LY  ++G  +      ++ V+  ++ N    +    +  +        K   L+V+
Sbjct: 1527 VQRYLYKMIEGNPVGQ----NRMVQLRKICNHPYLFCYSSYTPDESLVRCCGKFAMLDVL 1582

Query: 63   IE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GK 108
            +   K     +++       L  L+               G + ++    +  +N+   +
Sbjct: 1583 LPALKMGNHRVLIFSQMTKLLDILEVYLSLRGHTYLRLDGGTSSEERQKRLSLYNQEGSE 1642

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G G+NLQ   + ++ F   W+ +      +    +R  + G K+ V   
Sbjct: 1643 YFIFILSTKAGGLGVNLQS-ADTVIIFDSDWNPQN-----DEQAQSRAHRIGQKKEVLTL 1696

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              I+  +I+E +LQR   K     L++ +
Sbjct: 1697 RFISVESIEEQILQRAECKLDKDKLVIQS 1725


>gi|22326612|ref|NP_196132.2| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|20260624|gb|AAM13210.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
 gi|31711770|gb|AAP68241.1| At5g05130 [Arabidopsis thaliana]
 gi|332003449|gb|AED90832.1| DNA/RNA helicase [Arabidopsis thaliana]
          Length = 862

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--- 110
           ++      +V   F   L  L+                 T+ K    I E+   ++    
Sbjct: 702 QENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPV 761

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL    + +  F  WW+    +Q ++RI      + G K+ V +  +
Sbjct: 762 VLLASLKASGTGINLTA-ASRVYLFDPWWNPAVEEQAMDRI-----HRIGQKQEVKMIRM 815

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           IA+N+I+E VL+  + K  + +    A K+ 
Sbjct: 816 IARNSIEERVLELQQKKKNLAN---EAFKRR 843


>gi|167521471|ref|XP_001745074.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776688|gb|EDQ90307.1| predicted protein [Monosiga brevicollis MX1]
          Length = 827

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 34/204 (16%)

Query: 8   QRELYCDLQGENIEAFNSA------SKTVK--CLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            R L       ++ A  +          V+    Q         +E+     +  +   +
Sbjct: 530 VRRLLPGSDDNDVAARTTLLEGSGKVALVRHMLRQ----WREKTDERALLVSNSTRCLDI 585

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPA 117
             ++ +A   P +                       +    +  +N       +      
Sbjct: 586 LQLLCEAEGWPFLR--------------LQGSTPTHQRLEMVNRFNARHHDDFVFLMSSK 631

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLN+  G + LV F   W+        +   + R  + G  R VF+Y L+A  TI+
Sbjct: 632 AGGVGLNI-VGASRLVLFDTDWNPSH-----DLQAMARIWREGQTRPVFIYRLVATGTIE 685

Query: 178 ELVLQRLRTKSTIQDLLLNALKKE 201
           E + QR   KS +   ++   + E
Sbjct: 686 EKIYQRQIVKSALGTTVMEDKETE 709


>gi|146161298|ref|XP_977122.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|146146801|gb|EAR86636.2| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1540

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
            +  +   K +   KI A+   I+         +V   F   +   +  F + +       
Sbjct: 1358 FTFDPTQKYIRSSKINAVMNYIQNLQKTDDKCLVFTQFLGMMDLFEIDFQKNKIPYLRLD 1417

Query: 96   ------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    I+ +N + +  +      + G GLNL    N ++    WW+       +
Sbjct: 1418 GSVNQKQRAEIIKRFNEDSQYKVFMISLKAGGVGLNLVK-ANHVLMVDPWWNPA-----V 1471

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            E   + R  + G K+ VFV   I  ++I+  +++    K  + +  + A KK+
Sbjct: 1472 EEQAIERCHRIGQKKEVFVTRFICDDSIESRMIKLHEEKRDLFENTIQATKKD 1524


>gi|134055853|emb|CAK96198.1| unnamed protein product [Aspergillus niger]
          Length = 1007

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 46/221 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + ++        +L N                              +H+      K++ 
Sbjct: 577 NSESALQLITILKKLCNSPSLLTPRDVNETPSETIAALLSSLPPNLLRHFTPSSSAKLRV 636

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++       +  I++  ++ S L  L                     K    ++++N
Sbjct: 637 LDQLLDGLRTKTSEKIVLVSNYTSTLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFN 696

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                          + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 697 RLPSNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDGQK 750

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R   +Y ++ + +++E + QR  TK  + D ++   KK+++
Sbjct: 751 RHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME--KKDSV 789


>gi|317026496|ref|XP_001389729.2| DNA-dependent ATPase [Aspergillus niger CBS 513.88]
          Length = 993

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 46/221 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + ++        +L N                              +H+      K++ 
Sbjct: 563 NSESALQLITILKKLCNSPSLLTPRDVNETPSETIAALLSSLPPNLLRHFTPSSSAKLRV 622

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++       +  I++  ++ S L  L                     K    ++++N
Sbjct: 623 LDQLLDGLRTKTSEKIVLVSNYTSTLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFN 682

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                          + G GLNL  G + LV F + W+        +   + R  + G K
Sbjct: 683 RLPSNLCFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDGQK 736

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R   +Y ++ + +++E + QR  TK  + D ++   KK+++
Sbjct: 737 RHCRIYRILLKGSLEEKIWQRQVTKIGLADSVME--KKDSV 775


>gi|148682181|gb|EDL14128.1| mCG2900 [Mus musculus]
          Length = 1217

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 357 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQD 414

Query: 43  ----DEEKHWKEVH----------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
               ++  +   +             K+  L  ++E  +      +V       L  +++
Sbjct: 415 ENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIER 474

Query: 87  AFPQGRTLD-----------KDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                               +    IQ      +  +        G GL L      +V 
Sbjct: 475 LLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTA-ATRVVI 533

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 534 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 588

Query: 195 LNALK 199
               K
Sbjct: 589 TGEKK 593


>gi|38014266|gb|AAH01474.2| RAD54L2 protein [Homo sapiens]
          Length = 1159

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 470 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 528

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  F+Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 529 SWNP-----CHDAQAVCRVYRYGQKKPCFIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 583

Query: 198 LK 199
           L 
Sbjct: 584 LN 585


>gi|303283790|ref|XP_003061186.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226457537|gb|EEH54836.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 962

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYY--------DEEKHWKE 50
             Q++ Y     ++IE  N         +  ++  +  N    +                
Sbjct: 340 DMQKDYYKKALQKDIEVVNRGGDRSRLLNMVMQLRKCCNHPYLFQGAEPGPPYFTGEHII 399

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++   K   + +++       L  L+      +                
Sbjct: 400 ENSGKMVLLDKLLTRLKEKGSRVLIFSQMTRLLDILEDYMIYRQHKYCRIDGNTSGEDRE 459

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I  +N              + G G+NL    + ++ +   W+ +     ++   + R 
Sbjct: 460 NAIDGYNAPGSEKFAFLLSTRAGGLGINLVT-ADTVIIYDSDWNPQ-----MDLQAMDRA 513

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  R V V+      +++E V+++   K  +  L++   +
Sbjct: 514 HRIGQTREVSVFRFCTDMSVEEKVIEKAYKKLALDALVIQQGR 556


>gi|255071433|ref|XP_002499390.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226514653|gb|ACO60649.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 865

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           G +       I+E+         ++F    + G G+NL    + +     WW+       
Sbjct: 738 GVSAAGREKCIREFQSPDADSPDVIFVSLKAGGVGINLTA-ASFVYMLDPWWNPAT---- 792

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            E   + R  + G  R V V   + +++IDE +++  + K  +     
Sbjct: 793 -EDQAMDRVHRLGQDRPVKVVRFVCKDSIDEKMMELQQRKRELAKAAF 839


>gi|259146092|emb|CAY79352.1| Chd1p [Saccharomyces cerevisiae EC1118]
 gi|323348857|gb|EGA83095.1| Chd1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1468

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 624 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 683

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 684 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 744 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|256271313|gb|EEU06383.1| Chd1p [Saccharomyces cerevisiae JAY291]
          Length = 1468

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 624 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 683

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 684 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 744 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|6321012|ref|NP_011091.1| Chd1p [Saccharomyces cerevisiae S288c]
 gi|418395|sp|P32657|CHD1_YEAST RecName: Full=Chromo domain-containing protein 1; AltName:
           Full=ATP-dependent helicase CHD1
 gi|603404|gb|AAB64691.1| Chd1p: transcriptional regulator [Saccharomyces cerevisiae]
 gi|285811798|tpg|DAA07826.1| TPA: Chd1p [Saccharomyces cerevisiae S288c]
          Length = 1468

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 624 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 683

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 684 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 744 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|238883925|gb|EEQ47563.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 785

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 28/201 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKA 66
           +    F + +      ++ N      +++ +K++ +EK                ++   +
Sbjct: 461 KKFNQFEAFTMINLFKKICNSPSLLADDEFFKKIVEEKFNLGMASGKINILVPLLLEIAS 520

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAH 115
               I++  ++   L  L++   +              +     + ++N    I +    
Sbjct: 521 LGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRNKLVNQFNTNPDINVFLLS 580

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             S G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y L     
Sbjct: 581 SKSGGMGINL-VGASRLILFDNDWNPATDLQSMSRI-----HRDGQLKPCFIYRLFTTGC 634

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           IDE + QR   K+ +    L+
Sbjct: 635 IDEKIFQRQLVKNKLSSKFLD 655


>gi|60390959|sp|Q9FF61|SM3L1_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 1; Short=SMARCA3-like protein 1
 gi|10178052|dbj|BAB11535.1| helicase-like transcription factor-like protein [Arabidopsis
           thaliana]
          Length = 881

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--- 110
           ++      +V   F   L  L+                 T+ K    I E+   ++    
Sbjct: 721 QENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPV 780

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL    + +  F  WW+    +Q ++RI      + G K+ V +  +
Sbjct: 781 VLLASLKASGTGINLTA-ASRVYLFDPWWNPAVEEQAMDRI-----HRIGQKQEVKMIRM 834

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           IA+N+I+E VL+  + K  + +    A K+ 
Sbjct: 835 IARNSIEERVLELQQKKKNLAN---EAFKRR 862


>gi|332190192|gb|AEE28313.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1458

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 96   KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    +  +NE    ++        +   G+NL Y  N ++     W+        +   
Sbjct: 1160 ERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNPT-----YDLQA 1213

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++         K+E +H+
Sbjct: 1214 IFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHL 1273


>gi|225444469|ref|XP_002267771.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 792

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIP 110
           ++E   +A  IV   F S L  +  +  Q                KD    +   +    
Sbjct: 635 MVEMDGSAKGIVFSQFTSFLDLISYSLHQSGINCVQLVGKMTATAKDAAVKRFNEDPDCK 694

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G  LNL    + +     WW+    QQ  +RI      + G  + V V   
Sbjct: 695 IFLTSLKSGGAALNL-PVASYVFLMEPWWNPFVEQQAYDRI-----HRIGQYKPVRVIKF 748

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I +NTI+E +L+    K ++ +  L +
Sbjct: 749 IIENTIEERILELQEKKESLSEGALGS 775



 Score = 35.5 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 4/99 (4%)

Query: 3   QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y + Q E    ++   +     +      +  Q  +        K  + + D      +
Sbjct: 495 LYKECQLEFNRYVEDGTLMNYYVHILELITRLRQALDHPYLVVHSKSGEALCDICKWVAK 554

Query: 61  VIIEKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKD 97
            ++  +       A    F   L +            + 
Sbjct: 555 DLVVTSCGHTFCKACLEDFTKILGKSLCPTCSLPFTPRK 593


>gi|151944881|gb|EDN63140.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
           YJM789]
          Length = 1468

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 624 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 683

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 684 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 744 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|74151005|dbj|BAE27633.1| unnamed protein product [Mus musculus]
          Length = 806

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 199 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 258

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 259 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 318

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 319 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 374

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 375 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 423


>gi|6599160|emb|CAB63724.1| hypothetical protein [Homo sapiens]
          Length = 580

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 57/249 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           ++ Y K          LQG    + +         +L N           KE      K 
Sbjct: 226 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSSTCDKN 284

Query: 59  LEVIIEK------------------------------------ANAAPIIVAYHFNSDLA 82
            E  + K                                         +++  ++   L 
Sbjct: 285 EEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLN 344

Query: 83  RLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            LQ+   +             + +    +  +N       +      + G GLNL  GG+
Sbjct: 345 ILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL-IGGS 403

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  +
Sbjct: 404 HLILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGL 458

Query: 191 QDLLLNALK 199
              +++  K
Sbjct: 459 CGAVVDLTK 467


>gi|195054603|ref|XP_001994214.1| GH23502 [Drosophila grimshawi]
 gi|193896084|gb|EDV94950.1| GH23502 [Drosophila grimshawi]
          Length = 1982

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 53/247 (21%)

Query: 1    MKQYHKF----QRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKE---- 50
            ++ Y  F     ++    L          +          + N       +         
Sbjct: 1671 LRLYEDFSNKHLKDCLDKLDDTENLGTKSHIFQALRYLQNVCNHPKLVLRQPSDDLSSSV 1730

Query: 51   --------------VHDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLARLQKA 87
                           H  K+ AL+ ++            +    ++     + L  ++  
Sbjct: 1731 AAQLALTNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHD 1790

Query: 88   FPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
              +                       +  +N +  I +L       G GLNL  G + ++
Sbjct: 1791 LLRKHLPRVTYLRLDGSVPASMRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVI 1849

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K    + 
Sbjct: 1850 FVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKIVTANT 1904

Query: 194  LLNALKK 200
            +++A   
Sbjct: 1905 VVSAENA 1911


>gi|313870791|gb|ADR82283.1| DNA repair protein [Blumeria graminis f. sp. tritici]
          Length = 883

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 53  DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCT 100
             KI  L  I+++  +    IV   F S L  ++  F              R   ++   
Sbjct: 668 STKITQLIKILKEEVHEHKFIVFSQFTSMLNLIEPFFHANDLVFSRYDGSMRNDSREASL 727

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N+ K  +L         GLNL      +V    +W+       +E   + R  +  
Sbjct: 728 AKLRNDKKCRILLCSLKCGSLGLNLTA-ATRVVILEPFWNP-----FVEEQAIDRVHRLT 781

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            K  V +Y +    T++E +L+    K  + +  +   K
Sbjct: 782 QKTDVIIYKITISKTVEERILELQDKKRALANETIEGGK 820



 Score = 42.0 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 4/44 (9%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 2   KQYHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY 42
           K Y + +     +++      +   ++    ++  Q  N     
Sbjct: 448 KLYQRIEERASKNMKKLITGEVSYASALVMLLRLRQACNHPSLV 491


>gi|297742732|emb|CBI35366.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 25/167 (14%)

Query: 50  EVHDEKIKALEVIIEKANA--------APIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
           E    KI+A   I++  +            IV   + S L  ++ +        +     
Sbjct: 726 EYSSSKIRAALEILQSHSYSNPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGT 785

Query: 98  ------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                    ++++N + ++ ++     +   GLN+    ++++   LWW+        E 
Sbjct: 786 MSLASRDRAVKDFNTDPEVTVMLMSLKAGNLGLNMVA-ASLVILLDLWWNPTT-----ED 839

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V R  + G  R V V  +  ++T+++ +L     K  +       
Sbjct: 840 QAVDRAHRIGQTRPVTVSRITIKDTVEDRILALQEDKRKMVASAFGE 886


>gi|256273323|gb|EEU08262.1| Uls1p [Saccharomyces cerevisiae JAY291]
          Length = 1619

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 1398 KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1513

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1514 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1567

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1603


>gi|320170019|gb|EFW46918.1| SNF2 superfamily RAD5 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1372

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGK 108
            + +      A  +V   + S +  ++  F              +  +    ++ +  +  
Sbjct: 1190 KELWTVEQDAKAVVFSQWTSMMDLIEVEFRHQGFVYVRLDGSLSQPQRERVLEAFQRDPA 1249

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + ++     S G GLNL    N +     WW++      +E   + R  + G  + V V 
Sbjct: 1250 VKIIIISLFSGGVGLNLTAAAN-VYLMDSWWNVA-----VENQALHRVHRIGQTKPVIVT 1303

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              IA  T++  +L+    K  + +  L   K E
Sbjct: 1304 RFIAARTVETRMLKIQARKQFLANHALATNKSE 1336


>gi|321264770|ref|XP_003197102.1| swi2/Snf2-related ATPase, component of the SWR1 complex; Swr1p
           [Cryptococcus gattii WM276]
 gi|317463580|gb|ADV25315.1| Swi2/Snf2-related ATPase, component of the SWR1 complex, putative;
           Swr1p [Cryptococcus gattii WM276]
          Length = 932

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             +  + + + E          +   KA    +++   F   L  L+ A           
Sbjct: 733 HKFALDPEVFLEGGKVMAMVKHIERCKAEGKRMLLFSQFVMILDILEGALNHLGIRYTRL 792

Query: 91  --GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 D+    + E+N+   I +      + G G+NL    +++V +   ++       
Sbjct: 793 DGQTKTDERQSLVDEFNDDTSITVFLLSTKAGGVGINLTA-ASVVVIYDQDFNP-----H 846

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +R    R  + G +R V V  LI +N+IDE +L+   TK  + D++
Sbjct: 847 NDRQAADRAYRIGQEREVEVIKLITKNSIDEDMLEIGLTKLQLDDMV 893


>gi|322706938|gb|EFY98517.1| chromo domain-containing protein 1 [Metarhizium anisopliae ARSEF
           23]
          Length = 1668

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSA-SKTVKCLQLANGAVYYDEEKHWKE------------ 50
           Y       Y  L        NS  +  ++  +++N    +   +                
Sbjct: 713 YKNILTRNYSALCDATGGHKNSLLNIMMELKKISNHPYMFPGAEERVLAGSVRREDQIKG 772

Query: 51  --VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 773 LITSSGKMMLLDQLLSKLKKDGHRVLIFSQMVKMLDILGDYLSLRGYKFQRLDGTIAAGP 832

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 833 RRMAINHFNADDSEDFCFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMA 886

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G KR V +Y L+++ T++E VL+R R K  ++ L + A
Sbjct: 887 RAHRIGQKRPVNIYRLVSKETVEEEVLERARNKLLLEYLTIQA 929


>gi|219110183|ref|XP_002176843.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411378|gb|EEC51306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 509

 Score = 87.1 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 27/214 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKT--VKCLQLANGAVYYDEEKHWKEVHDE-KIKALEVIIE 64
            RE         I    +       +                 K++    K K L  I+ 
Sbjct: 264 VREELDRFNDFEIH-LTALELLEENRLR----HEQLGRYVLQEKDLFSSAKCKRLRAILP 318

Query: 65  K--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGK-IPL 111
                   I++   + S L  L     Q             +++    I  +     IP+
Sbjct: 319 DLVGKGHRILIFSVWTSCLDLLSCLMEQMGLGYLRMEGSTPVNERQALIDRFTSETSIPV 378

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +CG G+NL    +  +   L ++        +     R  + G K+ V +  +I
Sbjct: 379 FLLSTKACGLGINLT-CADTCIMHDLDFNP-----FNDLQAEDRCHRIGQKKPVKIIKMI 432

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            ++T+DE + +  + K+ +   +++   +E  +V
Sbjct: 433 TEDTVDEDIYKMQQRKARMNAAIMDTDSREWNNV 466


>gi|325181644|emb|CCA16095.1| KIAA1416 protein putative [Albugo laibachii Nc14]
          Length = 1788

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 36/230 (15%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVY--------------YDEE 45
           + Y     +    L   G      N  +  ++  +  N                    E 
Sbjct: 693 QWYRAIYEKNTSFLSRGGNPNNIPNLMNVMMELRKCCNHPYLNNGVEEILNEGLRTERER 752

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                    K+  L+ ++   K     +++       L  ++          +       
Sbjct: 753 HEMMVKCCGKMVLLDKLLPRLKEGGHKVLIFSQMVRVLDIIEDYLRFLGHAYERLDGNIR 812

Query: 98  ----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  +  + + +    ++     + G GLNL    + +V F   W+ +      +  
Sbjct: 813 GNDRQAAVNRFVKEEYKRFVMLLSTKAGGLGLNLTA-ADTVVIFDSDWNPQN-----DLQ 866

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G   +V +Y LI + T +  +  +   K  +   +L  +++E
Sbjct: 867 AQARAHRIGQTHSVKIYRLITRKTYEMHMFHKASLKLGLDKAVLTHMRRE 916


>gi|297739163|emb|CBI28814.3| unnamed protein product [Vitis vinifera]
          Length = 964

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  ++E+  +A  IV   F S L  +  +  +                +D    
Sbjct: 796 DALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLQKSGITCVQLVGSMSMAARDAAIS 855

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  NE    +      + G  LNL    + +     WW+       +ER    R  + G 
Sbjct: 856 RFTNEPDCKIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VERQAQDRIHRIGQ 909

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + + +   + + TI+E +L+    K  + +  +  
Sbjct: 910 YKPIRIVRFVIEKTIEERILKLQEKKELVFEGTVGG 945


>gi|194382486|dbj|BAG64413.1| unnamed protein product [Homo sapiens]
          Length = 834

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 227 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 286

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 287 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 346

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 347 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 402

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 403 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 451


>gi|50306047|ref|XP_452985.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642118|emb|CAH01836.1| KLLA0C17578p [Kluyveromyces lactis]
          Length = 1525

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 41/214 (19%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------------VHDEKI 56
           ++G ++   N  ++  K    +N    +D  +                      +   K+
Sbjct: 653 IKGGHVSLLNVMNELKK---ASNHPYLFDNAEERVLSKFGDGHKSRENILRGLIMSSGKM 709

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
             L+ ++   K +   +++       L  L                     +   +I  +
Sbjct: 710 VLLDKLLTRLKKDGHRVLIFSQMVRILDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 769

Query: 105 N--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N  +    +      + G G+NL    + ++ F   W+ +      +   + R  + G K
Sbjct: 770 NAEDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMARAHRIGQK 823

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V VY  ++++T++E VL+R R K  ++  +++
Sbjct: 824 NHVMVYRFVSKDTVEEEVLERARKKMILEYAIIS 857


>gi|224095220|ref|XP_002310362.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222853265|gb|EEE90812.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 923

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPL 111
           +        IV   + S L  ++ +  Q     +              ++++N + ++ +
Sbjct: 763 LSTEGPIKAIVFSQWTSMLDLVEFSLNQHCIQYRRLDGTMTLSSRDKAVKDFNTDPEVTV 822

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLN+    + ++   LWW+        E   + R  + G  R V V  L 
Sbjct: 823 MLMSLKAGNLGLNMVAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRLT 876

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++T+++ +L     K  +       
Sbjct: 877 IKDTVEDRILALQDEKRKMVASAFGE 902


>gi|218200575|gb|EEC83002.1| hypothetical protein OsI_28047 [Oryza sativa Indica Group]
          Length = 1235

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  L+ +        +              ++++N + ++ ++     +
Sbjct: 1082 KAIVFSQWTGMLDLLELSLNSNLIQYRRLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKA 1141

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+++
Sbjct: 1142 GNLGLNMVAACH-VILLDLWWNP-----YAEDQAIDRAHRIGQTRPVTVSRLTIKDTVED 1195

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1196 RILALQEEKRAMVSSAFGEDK 1216


>gi|224001126|ref|XP_002290235.1| hypothetical protein THAPSDRAFT_268889 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973657|gb|EED91987.1| hypothetical protein THAPSDRAFT_268889 [Thalassiosira pseudonana
           CCMP1335]
          Length = 716

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 26/197 (13%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQ 85
             +   +A G++             +     + ++        +  IV   F + L  ++
Sbjct: 516 LKELQHVATGSILRRINLAEFATSSKIEALTQELVMMRQMSPGSKAIVFSQFTNMLDLIR 575

Query: 86  KAFPQ-----------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
                                      +D C  +   +  + +L     + G  LNL   
Sbjct: 576 WRLHSDPYLEDIGLGCRALHGGMNVKARDICLKEFREDNNVRVLLMSLKAGGVALNLT-C 634

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +     WW+     Q I+R       + G  R +     IA+NT++E +LQ    K 
Sbjct: 635 ANYIYLIDPWWNPAAEMQAIDR-----THRLGQYRPIRAIRFIAENTVEERILQLQEKKR 689

Query: 189 TIQDLLLNALKKETIHV 205
            + D  +       + +
Sbjct: 690 LVFDGTIGRDAGSLLKM 706


>gi|125559347|gb|EAZ04883.1| hypothetical protein OsI_27065 [Oryza sativa Indica Group]
          Length = 821

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 53  DEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
             K++AL  ++     +   +  ++   F   L  L+                 T  K  
Sbjct: 644 SSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRLDGSMTAKKRS 703

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             I+++         +L A   + G G+NL    + +  F  WW+       +E   + R
Sbjct: 704 EVIRQFGCVGPDSPTVLLASLKAAGAGVNLTA-ASTVYLFDPWWNPG-----VEEQAMDR 757

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G  + V V  LI +++I+E +L+    K  +        K 
Sbjct: 758 VHRIGQTKEVKVVRLIVKDSIEERMLELQERKKKLISGAFGRKKG 802


>gi|323335419|gb|EGA76705.1| Uls1p [Saccharomyces cerevisiae Vin13]
          Length = 1619

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 1398 KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1513

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1514 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1567

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1603


>gi|317147437|ref|XP_001822137.2| nucleosome remodeling complex ATPase subunit (Snf2h) [Aspergillus
           oryzae RIB40]
          Length = 733

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFN 78
            ++  + +              E       +  K   L  +++         II+  +FN
Sbjct: 478 LMELRKCSIHPYLLDDAIPDPYELGAHVITNSGKYIVLLKMVQHFVLERGRKIIIFSNFN 537

Query: 79  S----------------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                            D  R  +         ++       N+ +  +      + G G
Sbjct: 538 QALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDPRYMVFLISIRAGGEG 597

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + ++F    W+ +     + R    R  + G K  V ++ L ++ T++E + +
Sbjct: 598 LNLVS-SSTVIFLDEDWNPQ-----VMRQAEARVHRIGQKHPVRIFKLQSKGTVEEQISR 651

Query: 183 RLRTKSTIQDLLLNALKK 200
           R+  K+ +   ++  +  
Sbjct: 652 RIVKKAYVATKIMEDINA 669


>gi|145349626|ref|XP_001419229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579460|gb|ABO97522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 983

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 76/247 (30%), Gaps = 62/247 (25%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE----------------- 45
            Y  F      + Q    +A           +L N      +                  
Sbjct: 443 LYEHFLTSKAAN-QALTGKATAVLPAITALKKLCNHPKLIYDMINGAKNTGQAASGFSTC 501

Query: 46  -----------------------KHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNS 79
                                   H  E H  K   L  ++          I++  ++  
Sbjct: 502 AEFFTPGMYDGGGGRSGRGGGGMMHGWEEHSGKFAVLARLLANLRAETKDRIVIISNYTQ 561

Query: 80  DLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQY 127
            L  +     +            ++ K    ++++N+      +      + G G+NL  
Sbjct: 562 TLDLVGNMCRERNYPFVRLDGSTSIGKRQKLVKQFNDPTSNSFVFLLSSKAGGCGINL-I 620

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           GGN LV F   W+        ++    R  + G K+  ++Y  +A  TI+E V QR  +K
Sbjct: 621 GGNRLVLFDPDWNPAN-----DKQAAARCWRDGQKKKCYLYRFLAAGTIEEKVFQRQLSK 675

Query: 188 STIQDLL 194
            ++Q+++
Sbjct: 676 ESLQNVV 682


>gi|134077641|emb|CAK45712.1| unnamed protein product [Aspergillus niger]
          Length = 716

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----EKA 66
              +L+ +     N  SK     +L               +   KI+    I+     + 
Sbjct: 473 SLAELKKD--AQKNKKSKLKYLRRL-----------EKTWMSSAKIEKAMEILRDVYHRE 519

Query: 67  NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                I+   F S L              ++     R  D++   +   +     ++   
Sbjct: 520 GNEKTIIFSQFTSLLDLLEIPIARQGWDYRRYDGSMRPADRNTSVMDFTDNEDCRIMLVS 579

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   GLNL    + ++ F  +W+       +E   V R  + G  R V ++ ++ ++T
Sbjct: 580 LKAGNAGLNLVA-ASQVIIFDPFWNP-----YVEEQAVDRAHRIGQVRPVQIHRIVVKDT 633

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           +++ +L+    K  + +  L+ 
Sbjct: 634 VEDRILELQDKKRELVEGALDE 655



 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 4/52 (7%), Positives = 11/52 (21%), Gaps = 5/52 (9%)

Query: 4   YHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           Y+  +     ++      G      N     ++  Q         +      
Sbjct: 312 YNALEARSQNEVNRYLQQGVGRNYSNILVLLLRLRQACCHPHLIKDFTTEVN 363


>gi|256083283|ref|XP_002577876.1| helicase [Schistosoma mansoni]
 gi|238663214|emb|CAZ34114.1| helicase, putative [Schistosoma mansoni]
          Length = 1436

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 72/243 (29%), Gaps = 54/243 (22%)

Query: 3    QYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDE------------ 44
             Y   Q +      G   +           +  ++  ++ N    +              
Sbjct: 827  LYSHMQSKGVILTDGSEKDKKGKGGCRTLMNTIMQLRKICNHPFMFPHIEMAIAEQNFLN 886

Query: 45   ----------------EKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
                            E         K + L+ I+   K     +++     S +  +Q 
Sbjct: 887  VHNGNPPPTLPVPTQVEGKILYRSSGKFELLDRILPKLKCCGHRVLIFCQMTSLMTIMQD 946

Query: 87   AFPQGRTLD----------KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F                      + ++N+    I +      + G GLNLQ   + ++ 
Sbjct: 947  YFDYRNFRYLRLDGTTRSEDRGELLVKFNDTSEDIFIFLLSTRAGGLGLNLQA-ADTVII 1005

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   W+  +     +     R  + G +  V V  LI+ N+++E +L   R K  +   +
Sbjct: 1006 FDSDWNPHQ-----DLQAQDRAHRIGQQNEVRVLRLISINSVEEKILAAARFKLDVDQKV 1060

Query: 195  LNA 197
            + A
Sbjct: 1061 IQA 1063


>gi|198435106|ref|XP_002121833.1| PREDICTED: similar to Helicase domino [Ciona intestinalis]
          Length = 2659

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 49   KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDL-----------ARLQKAFPQGRTLD 95
             E    K++ L V++ +       I++       L            R  +         
Sbjct: 1400 IEYDCGKLQVLNVLLRRFWVEKHRILIFTQMTRVLDILEAFLSYHGYRYLRLDGSTPIEQ 1459

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +  N+ +I        S G G+NL  G + +VF+   W+       ++     R
Sbjct: 1460 RMARMERFNNDPRIFCFILSTRSGGIGVNLT-GADTVVFYDSDWNPT-----MDAQAQDR 1513

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G  R V +Y LI++ T++E +L++   K  + ++ +  
Sbjct: 1514 CHRIGQTRDVHIYRLISERTVEENILKKANQKRLLGEMAIEG 1555


>gi|254576997|ref|XP_002494485.1| ZYRO0A02618p [Zygosaccharomyces rouxii]
 gi|238937374|emb|CAR25552.1| ZYRO0A02618p [Zygosaccharomyces rouxii]
          Length = 1438

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K++ L+ ++   K N   +++ +     +  +++     +              +   
Sbjct: 1265 SAKLRKLDELLVDLKRNGHRVLIYFQMTKMMDLMEEYLTYRQYKHIRLDGSSKLEDRRDL 1324

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                     + +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1325 VHDWQTVPDLFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1378

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ ++TI+E +  R + K  +Q +++  
Sbjct: 1379 GQTRQVTVYRLLVRDTIEERMRDRAKQKEHVQQVVMEG 1416


>gi|47213833|emb|CAG00637.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 4522

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 24/189 (12%)

Query: 13   CDLQGENIEAFNSASKTVK-CLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
              + G  +  F   ++ +    Q  N  G +Y   + +           +E     ++  
Sbjct: 2868 LKIGGHRVLIFTQMTRMLDVLEQFLNYHGHIYLRLDGN---------TRVEQRQVSSDGP 2918

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             +  +  F+         F            ++ +N + +I        S G G+NL  G
Sbjct: 2919 YVGCSRLFSHLCVHFLCTFSPLH-----QALMERFNADQRIFCFILSTRSGGVGVNLT-G 2972

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F+   W+       ++     R  + G  R V +Y LI++ T++E +L++   K 
Sbjct: 2973 ADTVIFYDSDWNPT-----MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKR 3027

Query: 189  TIQDLLLNA 197
             + D+ +  
Sbjct: 3028 MLGDMAIEG 3036


>gi|238495805|ref|XP_002379138.1| DNA excision repair protein Rad16, putative [Aspergillus flavus
           NRRL3357]
 gi|317147580|ref|XP_001822233.2| DNA excision repair protein Rad16 [Aspergillus oryzae RIB40]
 gi|220694018|gb|EED50362.1| DNA excision repair protein Rad16, putative [Aspergillus flavus
           NRRL3357]
          Length = 958

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I  + N   +
Sbjct: 796 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQKSIDFFMNNVDV 855

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 856 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 909

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 910 LCIEDSVESRIVLLQEKKANLINGTINKDQGEALE 944


>gi|170092399|ref|XP_001877421.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
 gi|164647280|gb|EDR11524.1| chromodomain-helicase DNA-binding protein [Laccaria bicolor
           S238N-H82]
          Length = 1291

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 76/207 (36%), Gaps = 30/207 (14%)

Query: 23  FNSASKTVKCLQLANGAVYYD----------EEKHWKEVHDEKIKALEVIIEK--ANAAP 70
            +  +  ++  + AN    +D          E      ++  K+  L+ ++ +   +   
Sbjct: 547 ISLLNIAMELKKAANHPYLFDGAEVRTDNNEETLKGLVMNSGKMVLLDKLLARLRQDGHR 606

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPAS 118
           +++       L  L         L +             +I  +N    P         +
Sbjct: 607 VLIFSQMVRMLDILSDYMSLRGYLHQRLDGMVASEARKKSIAHFNTPGSPDFAFLLSTRA 666

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    + ++ F   W+ +      +   + R  + G K  V VY  ++++T++E
Sbjct: 667 GGLGINL-ETADTVIIFDSDWNPQN-----DLQAMARAHRIGQKSHVSVYRFVSKDTMEE 720

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            VL+R + K  ++  ++N +     H+
Sbjct: 721 DVLERAKKKMVLEYAIINQMDTSQAHL 747


>gi|115473675|ref|NP_001060436.1| Os07g0642400 [Oryza sativa Japonica Group]
 gi|23237908|dbj|BAC16482.1| putative RUSH-1alpha [Oryza sativa Japonica Group]
 gi|50509930|dbj|BAD30251.1| putative RUSH-1alpha [Oryza sativa Japonica Group]
 gi|113611972|dbj|BAF22350.1| Os07g0642400 [Oryza sativa Japonica Group]
          Length = 821

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 53  DEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
             K++AL  ++     +   +  ++   F   L  L+                 T  K  
Sbjct: 644 SSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRLDGSMTAKKRS 703

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             I+++         +L A   + G G+NL    + +  F  WW+       +E   + R
Sbjct: 704 EVIRQFGCVGPDSPTVLLASLKAAGAGVNLTA-ASTVYLFDPWWNPG-----VEEQAMDR 757

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G  + V V  LI +++I+E +L+    K  +        K 
Sbjct: 758 VHRIGQTKEVKVVRLIVKDSIEERMLELQERKKKLISGAFGRKKG 802


>gi|302789546|ref|XP_002976541.1| hypothetical protein SELMODRAFT_105336 [Selaginella moellendorffii]
 gi|300155579|gb|EFJ22210.1| hypothetical protein SELMODRAFT_105336 [Selaginella moellendorffii]
          Length = 788

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 63/240 (26%), Gaps = 55/240 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y  F R              ++ +      ++ +  +                     
Sbjct: 344 QMYTAFLRSETAQGSLAGSAKGSALAALTILKKICDHPLLLTKRATDDVVEGLEYLDSTD 403

Query: 43  ----------------DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL--- 81
                            E       H  KI  L  ++E         +V       L   
Sbjct: 404 IAAAEAMRKSLAGLAEPEPDSDGNKHSCKIVFLMALLENLVQEGHRTLVFAQTLKMLDII 463

Query: 82  ------ARLQKAFPQGRTL-DKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNIL 132
                  R       G+T   +    ++++      +          G GL L    + +
Sbjct: 464 QEEITKRRYSFCRIDGKTKGSERQRIVEDFQTDGCTVSIFLLTSQVGGLGLTLTA-ADRV 522

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V     W+  +  Q ++R       + G  R V VY L+   T++E + ++   K  +  
Sbjct: 523 VIVDPAWNPSKDNQSVDR-----AYRIGQLRDVIVYRLMTSGTLEEKIYRKQVFKGGLMK 577


>gi|297671222|ref|XP_002813740.1| PREDICTED: helicase ARIP4-like isoform 2 [Pongo abelii]
          Length = 1161

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 472 RNITYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 530

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 531 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 585

Query: 198 LK 199
           L 
Sbjct: 586 LN 587


>gi|297671220|ref|XP_002813739.1| PREDICTED: helicase ARIP4-like isoform 1 [Pongo abelii]
          Length = 1410

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 721 RNITYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 779

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 780 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 834

Query: 198 LK 199
           L 
Sbjct: 835 LN 836


>gi|126540715|emb|CAM46170.1| chromodomain helicase DNA binding protein 6 [Mus musculus]
          Length = 1184

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 707 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 766

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 767 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 826

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-- 883

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 884 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAILQDINRKG 937


>gi|6324765|ref|NP_014834.1| Uls1p [Saccharomyces cerevisiae S288c]
 gi|74676476|sp|Q08562|ULS1_YEAST RecName: Full=ATP-dependent helicase ULS1; AltName: Full=Role in
            silencing protein 1; AltName: Full=Ubiquitin ligase for
            SUMO conjugates protein 1
 gi|1420457|emb|CAA99400.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|190407507|gb|EDV10774.1| SWI2/SNF2 DNA-dependent ATPase family member [Saccharomyces
            cerevisiae RM11-1a]
 gi|285815070|tpg|DAA10963.1| TPA: Uls1p [Saccharomyces cerevisiae S288c]
          Length = 1619

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 1398 KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1513

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1514 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1567

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1603


>gi|224013614|ref|XP_002296471.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
 gi|220968823|gb|EED87167.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
          Length = 690

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 65/241 (26%), Gaps = 52/241 (21%)

Query: 2   KQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK---------- 49
           + Y         +  +      A    +  ++  +  N     D  +  +          
Sbjct: 337 QYYRAIFEHNHAFLSMGSSKAVAPKLMNIQMELRKCCNHPFLLDGIESREMEKRHEELSA 396

Query: 50  ---------------------EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
                                 +   K+  L+ ++ K       +++   F   L  +  
Sbjct: 397 SGELDGKSPEEQHHILNEYGYVMSSGKMVLLDKLLPKLRQEGHKVLIFSQFVKMLDLISD 456

Query: 87  AFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    +              I  +  E    +      + G G+NL    +I + F
Sbjct: 457 YCDFREFRYERLDGRVRGNERQKAIDRFETEKDSFVFLLSTRAGGVGINLTA-ADICIIF 515

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+ +      +     R  + G  + V +Y L+   T ++ +  R   K  ++  +L
Sbjct: 516 DSDWNPQN-----DVQAQARCHRIGQTKDVMIYRLVTSRTFEQEMFDRASKKLGLEQAVL 570

Query: 196 N 196
            
Sbjct: 571 G 571


>gi|167533758|ref|XP_001748558.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773077|gb|EDQ86722.1| predicted protein [Monosiga brevicollis MX1]
          Length = 692

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 58/236 (24%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------------DEKIKAL 59
               ++ +         ++ N      +                           K+ AL
Sbjct: 399 SSKQDSQHVFQSLQFLRKVCNHPALALKSGTALAERVLTEVASAHHQPRDYQLSGKLVAL 458

Query: 60  EVIIEKAN---------------------AAPIIVAYHFNSDLAR-------------LQ 85
             ++ +                           ++     + L                 
Sbjct: 459 RQLLMECEIAGRSGDANADEADLARTAVGRHRALIFAQQRAFLDIVQEELLDKHLPEVTY 518

Query: 86  KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +    G    +    + E+N +  I +L    +  G GL L  G + ++F    W+    
Sbjct: 519 RRLDGGVPAQQRHDIVVEFNEDPSIDVLLLTTSVGGLGLTLT-GADTVIFLEHDWNP--- 574

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             M +   + R  + G  R V VY LI Q T++E ++   R K  + D ++NA   
Sbjct: 575 --MKDLQAMDRAHRLGQTRVVNVYRLITQRTLEEKIMSLQRFKINVADTVVNAENA 628


>gi|147852279|emb|CAN82215.1| hypothetical protein VITISV_020421 [Vitis vinifera]
          Length = 1435

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              ++++N   ++ ++    
Sbjct: 1253 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 1312

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+
Sbjct: 1313 KAASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTV 1366

Query: 177  DELVLQRLRTKSTIQDLLLNALK 199
            ++ +L   + K  +        +
Sbjct: 1367 EDRILALQQKKREMVASAFGEDE 1389


>gi|4056412|gb|AAC97986.1| BRG-1-HUMAN [AA 812-1440] [Homo sapiens]
          Length = 628

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 194 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 253

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 254 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 313

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 314 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 369

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 370 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 418


>gi|327351086|gb|EGE79943.1| DsDNA-dependent ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1011

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + ++        +L N     +                        +H       KI+ 
Sbjct: 610 NSESALQLITILKKLCNSPSLLNPRNCDETPNSTLSALVSSLPPNILRHLSPSSSGKIRV 669

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 670 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFN 729

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + LV F + W+     Q + RI      + G K
Sbjct: 730 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDGQK 783

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R   +Y L+ +  ++E + QR  TK  + D +++  K 
Sbjct: 784 RHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKKG 821


>gi|301614708|ref|XP_002936822.1| PREDICTED: DNA excision repair protein ERCC-6-like [Xenopus
           (Silurana) tropicalis]
          Length = 1361

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 65/240 (27%), Gaps = 51/240 (21%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-----------------DEE 45
            Y KF       ++   +   +  ++     +L +                      +EE
Sbjct: 385 VYRKFI--SLDQIKELLMTTRSPLAELNILKKLCDHPRLLSARACIQLGLEGDDYHSNEE 442

Query: 46  KHWKEVHDEKIKALEVIIEK---------------ANAAPIIVAYHFNSDLAR------- 83
              + V      + E++IE+                     +V       L         
Sbjct: 443 GDHELVTKFDHLSDEILIEESGKLLLLIDLLHKLKEEGHRTLVFSQSRKMLDMIDRILQN 502

Query: 84  ---LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        L +    I  +       +L       G GL L    + +V F   W
Sbjct: 503 KNFKVMRIDGTVALPEREKRISIFQSNNNYSVLLLTTQVGGVGLTLTA-ADRVVIFDPSW 561

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        +   V R  + G +  V +Y LI   T++E + +R   K ++        K
Sbjct: 562 NPAT-----DAQAVDRAYRIGQQENVVIYRLITCGTVEEKIYRRQIFKESLIRQTTGDKK 616


>gi|151945478|gb|EDN63720.1| Member of the SWI/SNF family of DNA-dependent ATPases [Saccharomyces
            cerevisiae YJM789]
          Length = 1619

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 1398 KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1453

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1513

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1514 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1567

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1603


>gi|74691592|sp|Q74Z27|INO80_ASHGO RecName: Full=Putative DNA helicase INO80
          Length = 1414

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++   KA    +++ +     +  +++     +              +   
Sbjct: 1239 SAKLKKLDELLVRLKAGEHRVLIYFQMTRMMDLIEEYLTYRQYKHIRLDGSSKLEDRRDL 1298

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1299 VHDWQTKSDIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1352

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1353 GQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEGKTKE 1394


>gi|299470515|emb|CBN78506.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2647

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 66/214 (30%), Gaps = 27/214 (12%)

Query: 4    YHKFQRELYCDLQGE--NIEAFNSASKTVKCLQ---LANGAVYYDEEKHWKEVHDEKIKA 58
            Y     +    L      + A +  +  ++  +     N        +          + 
Sbjct: 937  YRAIYEKNTQFLFKGARPVHAPSLMNIMMELRKGGVCCNHPFLNRGVEERIL-----SEI 991

Query: 59   LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEGKI 109
             + +  KAN    +V       L         G   ++             ++ +N  + 
Sbjct: 992  PDELHTKANVHKQLVDASGKDFLKGGVDGEGPGYKYERLDGNTRANMRTAAVERFNRPQF 1051

Query: 110  P--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               ++     + G GLNL    + ++ +   W+        +     R  + G  +AV V
Sbjct: 1052 KRFVMLLSTRAGGLGLNLTT-ADTVIIYDSDWNP-----HNDLQAQARAHRIGQTKAVMV 1105

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Y L+++ T +  +  +   K  +   +L   + E
Sbjct: 1106 YRLLSKKTYEMHMFHQASLKLGLDKAVLAHARSE 1139


>gi|290889290|gb|ADD69942.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
          Length = 1785

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 706 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 765

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 766 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 825

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 826 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 879

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 880 RAHRIGQKKQVNIYRLVTKASVEEDILERAKKKMVLDHLVIQRM 923


>gi|259149676|emb|CAY86480.1| Uls1p [Saccharomyces cerevisiae EC1118]
          Length = 1619

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 1398 KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIRVIQ 1453

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1454 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1513

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1514 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1567

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1603


>gi|239607133|gb|EEQ84120.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis ER-3]
          Length = 989

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + ++        +L N     +                        +H       KI+ 
Sbjct: 589 NSESALQLITILKKLCNSPSLLNPRNCDETPNSTLSALVSSLPPNILRHLSPSSSGKIRV 648

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 649 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFN 708

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + LV F + W+     Q + RI      + G K
Sbjct: 709 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDGQK 762

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R   +Y L+ +  ++E + QR  TK  + D +++  K 
Sbjct: 763 RHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKKG 800


>gi|328772764|gb|EGF82802.1| hypothetical protein BATDEDRAFT_9456 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1238

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 84/227 (37%), Gaps = 38/227 (16%)

Query: 1   MKQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYD----------EE 45
           ++ Y     + +  L      G+ +   N A   ++  + +N    +D          ++
Sbjct: 418 LEYYKAVFTKNFETLNRGTAGGKQVSLQNIA---MELKKASNHPYLFDGAEPPNMSREDQ 474

Query: 46  KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA-FPQGRTLDK------ 96
                ++  K+  L+ ++   +     +++       L  L      +G T  +      
Sbjct: 475 LKGIIMNSGKMVLLDKLLASLHEGQHRVLIFSQMVRMLNILSDYLSYRGYTFQRLDGTTQ 534

Query: 97  ---DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                 +++ +N              + G GLNL    + ++ F   W+ +      +  
Sbjct: 535 SEVRKRSMEHFNAAGSTDFAFLLSTRAGGLGLNL-ATADTVILFDSDWNPQN-----DLQ 588

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            + R  + G K  V VY  ++++TI+E +++R + K  ++  ++  +
Sbjct: 589 AIARAHRIGQKNTVNVYRFLSKDTIEEDIIERAKRKMVLEYSIIKTM 635


>gi|290999423|ref|XP_002682279.1| predicted protein [Naegleria gruberi]
 gi|284095906|gb|EFC49535.1| predicted protein [Naegleria gruberi]
          Length = 1635

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
             + LQ   G +     K    + D K     ++I    +  + V   F S          
Sbjct: 1319 KRLLQFDCGKLQ----KLSNLLKDLKRGGHRILIFTQMSKMLDVLESFMSMNGHSYFRLD 1374

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L++    ++ +N + KI        S G G+NL  G + ++F+   W+       +
Sbjct: 1375 GQTKLEERQYMMERFNTDPKIFAFILSTRSGGVGINLT-GADTVIFYDSDWNPA-----M 1428

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +     R  + G  R V +Y LI+++TI+E +L +   K  + +++++
Sbjct: 1429 DAQAQDRCHRIGQTRNVNIYRLISESTIEERILLKANQKRHMNEIVIH 1476


>gi|261201037|ref|XP_002626919.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239593991|gb|EEQ76572.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 999

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + ++        +L N     +                        +H       KI+ 
Sbjct: 589 NSESALQLITILKKLCNSPSLLNPRNCDETPNSTLSALVSSLPPNILRHLSPSSSGKIRV 648

Query: 59  LEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++          +++  ++ S L  L                     K    + ++N
Sbjct: 649 LDQLLHNIRHTTSEKVVLISNYTSTLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFN 708

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                 +        + G GLNL  G + LV F + W+     Q + RI      + G K
Sbjct: 709 RSSSSSVFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPATDMQAMARI-----HRDGQK 762

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R   +Y L+ +  ++E + QR  TK  + D +++  K 
Sbjct: 763 RHCRIYRLLLKGALEEKIWQRQVTKIGLADSVMDQKKG 800


>gi|194389260|dbj|BAG65618.1| unnamed protein product [Homo sapiens]
          Length = 1161

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 472 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 530

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 531 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 585

Query: 198 LK 199
           L 
Sbjct: 586 LN 587


>gi|168823443|ref|NP_055921.2| helicase ARIP4 [Homo sapiens]
 gi|296439458|sp|Q9Y4B4|ARIP4_HUMAN RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2
          Length = 1467

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 778 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 836

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 837 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891

Query: 198 LK 199
           L 
Sbjct: 892 LN 893


>gi|119585552|gb|EAW65148.1| hCG1997495, isoform CRA_d [Homo sapiens]
          Length = 1415

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 726 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 784

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 785 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 839

Query: 198 LK 199
           L 
Sbjct: 840 LN 841


>gi|114587116|ref|XP_001169759.1| PREDICTED: RAD54-like 2 isoform 1 [Pan troglodytes]
 gi|114587118|ref|XP_001169781.1| PREDICTED: RAD54-like 2 isoform 2 [Pan troglodytes]
          Length = 1467

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 778 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 836

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 837 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891

Query: 198 LK 199
           L 
Sbjct: 892 LN 893


>gi|109039362|ref|XP_001096767.1| PREDICTED: helicase ARIP4 [Macaca mulatta]
          Length = 1467

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 778 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 836

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 837 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891

Query: 198 LK 199
           L 
Sbjct: 892 LN 893


>gi|60688369|gb|AAH90481.1| Hells protein [Danio rerio]
          Length = 252

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
              +++     S L  L                     D+D    +  ++ ++ L     
Sbjct: 30  GHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLST 89

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    + ++ F   W+ +      +     R  + G  + V VY LI  NTI
Sbjct: 90  RAGGLGINLTS-ADTVIIFDSDWNPQA-----DLQAQDRCHRIGQTKPVVVYRLITANTI 143

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           DE +L+R   K  ++ ++++  K
Sbjct: 144 DEKILERASAKRKLEKMVIHKNK 166


>gi|18999468|gb|AAH24298.1| RAD54-like 2 (S. cerevisiae) [Homo sapiens]
 gi|123982750|gb|ABM83116.1| RAD54-like 2 (S. cerevisiae) [synthetic construct]
 gi|123997421|gb|ABM86312.1| RAD54-like 2 (S. cerevisiae) [synthetic construct]
          Length = 1359

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 670 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 728

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 729 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 783

Query: 198 LK 199
           L 
Sbjct: 784 LN 785


>gi|20521664|dbj|BAA34529.2| KIAA0809 protein [Homo sapiens]
          Length = 1385

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +    I ++N+       L      +   G+NL  G N +V F  
Sbjct: 696 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDA 754

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ 
Sbjct: 755 SWNP-----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 809

Query: 198 LK 199
           L 
Sbjct: 810 LN 811


>gi|324502582|gb|ADY41136.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 1035

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDE 54
           K Y             +     +  +   +  + A     +D                  
Sbjct: 264 KNYRFLSAAGCAQGDHQGGSRNSLVNIMTQLRKCALHPYLFDGMEPEPFKEGEHLATSSG 323

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQ 102
           K+  LE I+   + +   +++       L  +Q  F   R   +              I 
Sbjct: 324 KMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKLKADMRFTAID 383

Query: 103 EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +    +        + G GL L  G + ++F    ++ +      +     R  + G
Sbjct: 384 NFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQN-----DIQAAARCHRIG 437

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V +  L+ +NT++E++      K  + + ++ +
Sbjct: 438 QTKHVKIIRLVTKNTVEEVIECYATRKLRMTNRVMES 474


>gi|300121515|emb|CBK22034.2| unnamed protein product [Blastocystis hominis]
          Length = 508

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 66/195 (33%), Gaps = 28/195 (14%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKE---------VHDEKIKALEVIIEK--ANAAPIIVAYH 76
           +     QL +      EEK                 K+  L+ +++        ++V   
Sbjct: 311 RMQILRQLVSHPYNVYEEKSSSGSYITDESIIQKSSKLTLLDNLLKVLIPKGHRVLVFVQ 370

Query: 77  FNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F   L  L+                    D+D       +   IP+      S G G+NL
Sbjct: 371 FVETLHLLEDYCTFRGYENCSIHGSTLQSDRDQEIKDFQSREDIPIFLLTTRSGGLGINL 430

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ +   W+ ++     +   + R  + G KR V VY  +   T+D  +L+   
Sbjct: 431 -SAADTVILYDSDWNPQQ-----DIQAMDRAHRLGQKRDVVVYRFVTLGTMDVQLLKIAE 484

Query: 186 TKSTIQDLLLNALKK 200
            K  ++ ++ +  + 
Sbjct: 485 EKRKLERIVTHHDRA 499


>gi|66360055|ref|XP_627205.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
 gi|46228613|gb|EAK89483.1| Swr1p like SWI/SNF2 family ATpase with a HSA domain at the N-terminus
            probably involved in chromatin remodelling
            [Cryptosporidium parvum Iowa II]
          Length = 1371

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------G 91
              +   E    K + L  ++ K        I+    +  L  L+                
Sbjct: 1029 PPRRIIEDDCGKFQILSRLLHKLFNEGHRCIIFTQMSKMLDVLESFINYRGYNYLRLDGS 1088

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D     +  +N + +I L  +   S G GLNL  G + ++F+   W+       ++R
Sbjct: 1089 TKVDDRQKLVNRFNRDQRIYLFISSTRSGGVGLNLT-GADTVIFYDSDWNPA-----MDR 1142

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + R  + G  R V +Y L+++ TI+E + ++   K  + D++++  +
Sbjct: 1143 QAMDRCHRIGQTRDVNIYRLVSEWTIEESIFKKQLQKRLLDDVVVDQGR 1191


>gi|320584169|gb|EFW98380.1| helicase, putative [Pichia angusta DL-1]
          Length = 1498

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 66/198 (33%), Gaps = 19/198 (9%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
             ++                  Q          +K   +    K++ L  +++        
Sbjct: 1169 LEIPEPVQNEIRQLKLDNPFHQAQIKLSITFPDKSLLQYDCGKLQKLASLLQDLIPKGHR 1228

Query: 71   IIVAYHFNSDLAR-LQKAFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASC 119
            +++       L    +     G    +              + +N + KI        S 
Sbjct: 1229 VLIFTQMTKVLDILEKFMNYNGYKYMRLDGATKIEDRQLLTERFNKDPKIKCFILSTRSG 1288

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL  G + ++F+   W+       +++    R  + G  R V +Y  +++ TI+  
Sbjct: 1289 GLGINLT-GADTVIFYDSDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESN 1342

Query: 180  VLQRLRTKSTIQDLLLNA 197
            +L++   K  + ++++  
Sbjct: 1343 ILKKANQKRQLDNVVIQE 1360


>gi|168012254|ref|XP_001758817.1| SNF2 family DNA-dependent ATPase domain-containing protein
            [Physcomitrella patens subsp. patens]
 gi|162689954|gb|EDQ76323.1| SNF2 family DNA-dependent ATPase domain-containing protein
            [Physcomitrella patens subsp. patens]
          Length = 1437

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 15/192 (7%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            ++L    Q E +E        +K L           +     V  + +  L++I      
Sbjct: 1038 KDLIDGQQREVLELSGKMVILMKIL------SLSSVKSDKALVFSQSLHTLDLIEVFLAN 1091

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNL 125
             P +  +  N    R         +       ++ +N+     +  +     +   G+NL
Sbjct: 1092 MPCLNGWKGNWVKNRDWYRLDGQTSAKSRQELVERFNDPDNTSVQCVLISTRAGSLGINL 1151

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                N ++ F   W+        +   + R  + G K+ V+ Y L+A  T++E +  R  
Sbjct: 1152 PA-ANRVIIFDGSWNPTH-----DLQALFRAWRFGQKKNVYAYRLLASGTMEEKIYNRQV 1205

Query: 186  TKSTIQDLLLNA 197
             K  +   +L+ 
Sbjct: 1206 AKEGLAARVLDE 1217


>gi|115492543|ref|XP_001210899.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114197759|gb|EAU39459.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1329

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 45/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE-----------------------KHWKEVHDEKIK 57
            A ++        +L N       +                       +H+      K++
Sbjct: 562 NAESALQLITILKKLCNSPSLLSPKNNKDQAPSETVAALLASLPSNLLRHFSPSSSAKVR 621

Query: 58  ALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            L+ ++ K +   +  I++  ++ S L  L                     K    ++++
Sbjct: 622 VLDQLLYKLHTTTSEKIVLVSNYTSTLNLLATLLTALSLPFLRLDGSTPAQKRQSLVEDF 681

Query: 105 N---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           N     +         + G GLNL  G + LV F + W+        +   + R  + G 
Sbjct: 682 NRLPADRSFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT-----DIQAMARIHRDGQ 735

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           KRA  +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 736 KRACRIYRILLKGSLEEKIWQRQVTKLGLADSVME 770


>gi|72386767|ref|XP_843808.1| transcription activator [Trypanosoma brucei TREU927]
 gi|62359823|gb|AAX80252.1| transcription activator, putative [Trypanosoma brucei]
 gi|70800340|gb|AAZ10249.1| transcription activator, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 948

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ ++ +   N    ++  +F   L  LQ                    +   
Sbjct: 520 PSGKMIELDRMLREFHMNGHRCLIFSNFTCVLDLLQGLCILRDYSHERIDGSAQRVEREL 579

Query: 100 TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           ++  +N     +        S G G+ L  G +I++ F   ++ +     ++R    R  
Sbjct: 580 SMARFNGPASKVFVFLISTMSGGVGITLT-GADIVILFDANFNPQ-----MDRQAADRAH 633

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V V+ L  + T++E +      + ++ + +++ 
Sbjct: 634 RIGQTRTVRVFRLCCKETVEERIQDIALRRLSLGEFVVDG 673


>gi|317063195|ref|ZP_07927680.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313688871|gb|EFS25706.1| SWF/SNF family helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 926

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y  +       G     F       +  Q+ +       E     V   K
Sbjct: 706 KLYEERRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITS-----CPEAKSNGVTSSK 760

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTLDKDPCTIQEW 104
            + L   I +   N   ++V  ++         DL R    +    G T D+     +  
Sbjct: 761 REVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRFQ 820

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 821 KDNKYKVFIMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 874

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y LI ++TI+E +LQ   TKS + D L++ 
Sbjct: 875 VFSYKLILKDTIEEKILQLQDTKSKLLDNLISE 907


>gi|156523172|ref|NP_001096000.1| DNA excision repair protein ERCC-6-like [Bos taurus]
 gi|182645386|sp|A6QQR4|ERC6L_BOVIN RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|151554062|gb|AAI49964.1| ERCC6L protein [Bos taurus]
 gi|296470840|gb|DAA12955.1| DNA excision repair protein ERCC-6-like [Bos taurus]
          Length = 1242

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------ 43
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 379 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACGLLNLGAAKFSVQD 436

Query: 44  --------EEKHWKEVH-------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL-- 84
                   +  H  ++          K+  L  +++K        +V       L  +  
Sbjct: 437 EIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVFSQSRRILNIIER 496

Query: 85  ----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                     +        ++++             +        G GL L    + +V 
Sbjct: 497 LLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTA-ASRVVI 555

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 556 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 610

Query: 195 LNALK 199
               K
Sbjct: 611 TGDKK 615


>gi|67522999|ref|XP_659560.1| hypothetical protein AN1956.2 [Aspergillus nidulans FGSC A4]
 gi|40745965|gb|EAA65121.1| hypothetical protein AN1956.2 [Aspergillus nidulans FGSC A4]
 gi|259487315|tpe|CBF85892.1| TPA: chromatin remodeling complex subunit (Chd3), putative
            (AFU_orthologue; AFUA_4G13440) [Aspergillus nidulans FGSC
            A4]
          Length = 1443

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 68/198 (34%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       + +    +                K++ LE+++ K       ++V  
Sbjct: 886  LMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKLQLLELMLPKLQARGHRVLVFS 945

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++          +              I ++N    P         S G G+
Sbjct: 946  QFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDDYNAENSPYFAFLLSTRSGGVGI 1005

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + + +E ++Q 
Sbjct: 1006 NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMIRGSAEEKIMQI 1059

Query: 184  LRTKSTIQDLLLNALKKE 201
             R K  +  +L++ +  E
Sbjct: 1060 GRKKMVLDHVLIDRMAAE 1077


>gi|302309580|ref|NP_987045.2| AGR379Wp [Ashbya gossypii ATCC 10895]
 gi|299788425|gb|AAS54869.2| AGR379Wp [Ashbya gossypii ATCC 10895]
          Length = 1414

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++   KA    +++ +     +  +++     +              +   
Sbjct: 1239 SAKLKKLDELLVRLKAGEHRVLIYFQMTRMMDLIEEYLTYRQYKHIRLDGSSKLEDRRDL 1298

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1299 VHDWQTKSDIFIFLLSTRAGGLGINLTS-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1352

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V VY L+ + TI+E +  R + K  +Q +++    KE
Sbjct: 1353 GQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVMEGKTKE 1394


>gi|297843648|ref|XP_002889705.1| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]
 gi|297335547|gb|EFH65964.1| ATRX/CHR20 [Arabidopsis lyrata subsp. lyrata]
          Length = 1483

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 96   KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    +  +NE    ++        +   G+NL Y  N ++     W+        +   
Sbjct: 1189 ERQKLVDRFNEPDNKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNPT-----YDLQA 1242

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + R  + G K+ VF Y L+A+ TI+E + +R  TK  +   +++         K+E +H+
Sbjct: 1243 IFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHL 1302


>gi|325118669|emb|CBZ54220.1| hypothetical protein NCLIV_046520 [Neospora caninum Liverpool]
          Length = 1703

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 16/153 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEW 104
             + L  I  +      +V   F S L  ++    +G               +        
Sbjct: 1537 YQELLDIEREDTTVKSLVFSQFCSMLDLIEWRLKKGGIHCAKLVGSMSIVSRSNVLYAFN 1596

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N+  + +L     + G GLNLQ   + +     WW+     Q I+R     QRQ    + 
Sbjct: 1597 NDPSLKVLLISLKAGGEGLNLQ-IASRIFLMDPWWNPAAEMQAIQRAHRIGQRQ----KE 1651

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V     IA+ TI+E +LQ    K  + D  + A
Sbjct: 1652 VIAVRFIAEKTIEERILQLQEKKQLVFDGTVGA 1684


>gi|151941373|gb|EDN59744.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1131

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 32   CLQLANGAVYY---DEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ 85
              +L           +  + + +   KI AL+ +++         +++   F   L  L+
Sbjct: 924  LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 983

Query: 86   K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                              ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 984  MVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINL-VCANNVII 1042

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  + V +  LI +++I+E + Q  + K  +   +
Sbjct: 1043 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 1097

Query: 195  LNALKKETI 203
                K + +
Sbjct: 1098 SEDKKSQDV 1106


>gi|67515813|ref|XP_657792.1| hypothetical protein AN0188.2 [Aspergillus nidulans FGSC A4]
 gi|40746905|gb|EAA66061.1| hypothetical protein AN0188.2 [Aspergillus nidulans FGSC A4]
          Length = 1123

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 67/201 (33%), Gaps = 31/201 (15%)

Query: 29  TVKCLQLANGAVYYDE-------EKHWKEVHDEKIKALEVIIEKANA---APIIVAYHFN 78
            ++  + +       +                 K   L+ +I +        +I+   F+
Sbjct: 774 LMELRKCSIHPYLLADALPKEYNIGQHIVDASCKFIVLQKMIRQYVGLENKKVIIFSGFD 833

Query: 79  SDLARLQKAFPQGRTLD---------------KDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             L   +      +                  ++       N+ +  +      + G GL
Sbjct: 834 QTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFLLSTRAGGEGL 893

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +I++F    W+ +     + R   +R  + G  + V ++ + A+ T+++ + +R
Sbjct: 894 NLVS-SSIVIFLDDDWNPQ-----VMRQAESRVHRIGQTQPVQIFRIHAKGTVEDQMRRR 947

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           +  K+ + D ++        H
Sbjct: 948 MDKKAYLADKVMGEFGNNITH 968


>gi|186492175|ref|NP_001117525.1| EDA16 (embryo sac development arrest 16); ATP binding / DNA binding /
            helicase/ nucleic acid binding / protein binding / zinc
            ion binding [Arabidopsis thaliana]
 gi|332195667|gb|AEE33788.1| SNF2, helicase and zinc finger domain-containing protein [Arabidopsis
            thaliana]
          Length = 1122

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE- 106
                +  K      IV   +   L  L+ +        +              +Q++N  
Sbjct: 955  MSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL 1014

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++ ++     +   GLN+    + ++   LWW+        E   + R  + G  R V 
Sbjct: 1015 PEVTVMIMSLKAASLGLNMVAACH-VLMLDLWWNPTT-----EDQAIDRAHRIGQTRPVT 1068

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V     ++T+++ +L   + K  +        +K
Sbjct: 1069 VVRFTVKDTVEDRILALQQKKRMMVASAFGEDEK 1102


>gi|186492170|ref|NP_176309.2| EDA16 (embryo sac development arrest 16); ATP binding / DNA binding /
            helicase/ nucleic acid binding / protein binding / zinc
            ion binding [Arabidopsis thaliana]
 gi|332195665|gb|AEE33786.1| SNF2, helicase and zinc finger domain-containing protein [Arabidopsis
            thaliana]
          Length = 1280

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 17/154 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE- 106
                +  K      IV   +   L  L+ +        +              +Q++N  
Sbjct: 1113 MSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL 1172

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++ ++     +   GLN+    + ++   LWW+        E   + R  + G  R V 
Sbjct: 1173 PEVTVMIMSLKAASLGLNMVAACH-VLMLDLWWNPTT-----EDQAIDRAHRIGQTRPVT 1226

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V     ++T+++ +L   + K  +        +K
Sbjct: 1227 VVRFTVKDTVEDRILALQQKKRMMVASAFGEDEK 1260


>gi|221508291|gb|EEE33878.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 998

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 29  TVKCLQLAN--GAVYYDEEKHWKEVHDE-----KIKALEVIIEKANAAPIIVAYHFNSDL 81
             + LQ A   G     ++    E           + L  I  +      +V   F S L
Sbjct: 798 LSRLLQQAGKRGPDGIMQKIKASEFRSSTKIEALYQELLEIEREDTTVKSLVFSQFCSML 857

Query: 82  ARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             ++    +G               +        N+  + +L     + G GLNLQ   +
Sbjct: 858 DLIEWRLKKGGIHCAKMVGSMSIVSRSNVLYAFNNDPSLKVLLISLKAGGEGLNLQ-IAS 916

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     WW+     Q I+R     QR     + V     IA+ TI+E +LQ    K  +
Sbjct: 917 RIFLMDPWWNPAAEMQAIQRAHRIGQRH----KEVIAIRFIAEKTIEERILQLQEKKQLV 972

Query: 191 QDLLLNA 197
            D  + A
Sbjct: 973 FDGTVGA 979


>gi|170033270|ref|XP_001844501.1| chromo domain protein 1 [Culex quinquefasciatus]
 gi|167873908|gb|EDS37291.1| chromo domain protein 1 [Culex quinquefasciatus]
          Length = 881

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 31  KCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
           K LQL      +Y         V   K + L+ ++ K  +    +++   F   L  ++ 
Sbjct: 661 KLLQLKEKYTSLYDLHIPEKLIVASGKFRQLDELLPKLKSEGHRVLIFSQFVMMLDIMEH 720

Query: 87  AFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                +                  I  +  +  I +      + G G+NL    + ++  
Sbjct: 721 YLKIRKHGFLRLDGQTAVTDRQEMIDLYTQDPNIFVFLLSTKAGGLGINLTA-ADTVIIH 779

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G  + V +Y L+++ TI+E +L   + K  ++  + 
Sbjct: 780 DIDFNP-----YNDKQAEDRAHRMGQTKPVTIYKLVSEGTIEEGMLMIAQEKLQLEKEVT 834

Query: 196 NALKKE 201
              + +
Sbjct: 835 EDGENK 840


>gi|327308268|ref|XP_003238825.1| chromatin remodeling complex subunit Chd3 [Trichophyton rubrum CBS
            118892]
 gi|326459081|gb|EGD84534.1| chromatin remodeling complex subunit Chd3 [Trichophyton rubrum CBS
            118892]
          Length = 1376

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 801  KQSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKL 860

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                 T  K    I  +N         
Sbjct: 861  QKRGHRVLIFSQFLDFLDIVEDFLDGLGLEHLRLDGSMTSLKKQKNIDAYNAPGSEYFAF 920

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 921  LLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 974

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 975  RGSAEEKIMQIGKKKMALDHVLIERM 1000


>gi|302774573|ref|XP_002970703.1| hypothetical protein SELMODRAFT_411494 [Selaginella moellendorffii]
 gi|300161414|gb|EFJ28029.1| hypothetical protein SELMODRAFT_411494 [Selaginella moellendorffii]
          Length = 1538

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 68/231 (29%), Gaps = 36/231 (15%)

Query: 2   KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y       + DL         +  +  V+  +  N    ++   H    +        
Sbjct: 696 QYYKWILERNFSDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGANATMTDNSR 755

Query: 61  -----------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                            ++  K     +++       L  L           +       
Sbjct: 756 VQRVVLSSGKLVLLDKLLVRLKETGHRVLIFSQMVKMLDILADYLRLRGFQFQRLDGSTK 815

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 816 HHLRQQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 869

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  + 
Sbjct: 870 AMSRAHRIGQEFVVNIYRFVTCRSVEEDILERAKKKMVLDHLVIQKLNAQG 920


>gi|254571325|ref|XP_002492772.1| Putative ATPase containing the DEAD/H helicase-related sequence
           motif [Pichia pastoris GS115]
 gi|238032570|emb|CAY70593.1| Putative ATPase containing the DEAD/H helicase-related sequence
           motif [Pichia pastoris GS115]
 gi|328353220|emb|CCA39618.1| hypothetical protein PP7435_Chr3-0661 [Pichia pastoris CBS 7435]
          Length = 805

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 74/209 (35%), Gaps = 33/209 (15%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALEVIIE----- 64
             I     ++  ++   + +    + +     +            K++ L  ++      
Sbjct: 512 SQILKKKLSNLVMQLRLICDSPFLFFDPWEDDQPLDFKKIVRESSKMQMLAQLLPRLLDS 571

Query: 65  ----KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIP 110
                     +++   F   +  ++    +            + ++    ++ +    I 
Sbjct: 572 KKSPDGKKHKVLIFCQFTKMMDLVEMWCQEENYSTYRIDGTTSQEERAGMVKGFATKDID 631

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G G+NL    + ++ F   W+ +     ++   + R  + G  + V +Y L
Sbjct: 632 IFLLSTRSGGLGINLTA-SDTVILFDSDWNPQ-----VDLQAIDRVHRIGQTQPVIIYRL 685

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              NTI++++L R  +K  ++ L+++  K
Sbjct: 686 CNINTIEQVLLARADSKRRLERLVISMGK 714


>gi|225447045|ref|XP_002269303.1| PREDICTED: similar to SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein [Vitis vinifera]
          Length = 989

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  ++E+  +A  IV   F S L  +  +  +                +D    
Sbjct: 821 DALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLQKSGITCVQLVGSMSMAARDAAIS 880

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +  NE    +      + G  LNL    + +     WW+       +ER    R  + G 
Sbjct: 881 RFTNEPDCKIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VERQAQDRIHRIGQ 934

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + + +   + + TI+E +L+    K  + +  +  
Sbjct: 935 YKPIRIVRFVIEKTIEERILKLQEKKELVFEGTVGG 970


>gi|159467545|ref|XP_001691952.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158278679|gb|EDP04442.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1254

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 52   HDEKIKALEVIIEKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
            H  K+ AL  I+       ++        +           G         +Q +N +  
Sbjct: 1111 HAPKLAALRDILATCGHKALLDLVERDLLAPYGVSYLRLDGGVEAGARFAVVQRFNADPT 1170

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I +L       G GLNL    + +VF    W+  +         + R  + G +R V VY
Sbjct: 1171 IDVLLLTTGVGGVGLNLTA-ADTVVFLEHDWNPMKDM-----QAMDRAHRLGQRRTVNVY 1224

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDL 193
             ++ + T++E VL   + K  + + 
Sbjct: 1225 RILTRGTLEERVLGLQQFKKDVAEA 1249


>gi|302764218|ref|XP_002965530.1| hypothetical protein SELMODRAFT_84809 [Selaginella moellendorffii]
 gi|300166344|gb|EFJ32950.1| hypothetical protein SELMODRAFT_84809 [Selaginella moellendorffii]
          Length = 971

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           K Q+  Y  L  ++++A N+        +  ++  +  N    +                
Sbjct: 348 KMQKHYYGSLLQKDLDAINTGGERRRLLNIAMQLKKCCNHPYLFQGAEPGPPYLSGEHLV 407

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                    +  
Sbjct: 408 ENSGKMVLLDKLLPKLKQRDSRVLIFSQMTRLLDILEDYCIYRTYQYCRIDGKTSGEERE 467

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N+      L      + G G+NL    +I++ +   W+ +      +     R 
Sbjct: 468 AAIESFNKEGSEKFLFLLSTRAGGLGINL-ATADIVILYDSDWNPQA-----DLQAQDRA 521

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 522 HRIGQKKEVQVFRFCTELTIEEKVIERAYKKLALDALVIQQGR 564


>gi|154338690|ref|XP_001565567.1| DNA repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062619|emb|CAM39061.1| putative DNA repair protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1099

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 18/163 (11%)

Query: 47   HWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLD 95
              K +H  K+ A+   IE+      ++V   F S L  +Q                 TL 
Sbjct: 924  PQKPLHGTKLDAIADYIERVPKDEKVVVFSQFGSMLDLMQYWLQRRFIKAVKLCGSLTLT 983

Query: 96   KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    +Q + ++  + ++     + G GLNLQ   N +V    WW+            V 
Sbjct: 984  QRQSVLQAFLHDRSVRVILISLKAGGEGLNLQ-VANHVVLTDPWWNPAVEM-----QAVQ 1037

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1038 RAHRIGQTRPVHAVRFVTEHSVEERMVDLQEKKMLVFEGTIDG 1080


>gi|58270542|ref|XP_572427.1| chromosome organization and biogenesis -related protein
           [Cryptococcus neoformans var. neoformans JEC21]
 gi|134118014|ref|XP_772388.1| hypothetical protein CNBL2540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255001|gb|EAL17741.1| hypothetical protein CNBL2540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228685|gb|AAW45120.1| chromosome organization and biogenesis -related protein, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 939

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             Y  + + + E          +   KA    +++   F   L  L+ A           
Sbjct: 739 HKYALDPEVFLEGGKVMAMVKHIERCKAEGKRMLLFSQFVMILDILEGALNHLGIRYTRL 798

Query: 91  --GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 D+    + E+N+   I +      + G G+NL    +++V +   ++       
Sbjct: 799 DGQTKTDERQGLVDEFNDDTDITVFLLSTKAGGVGINLTA-ASVVVIYDQDFNP-----H 852

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +R    R  + G +R V V  LI +N+IDE +L+   TK  + D++
Sbjct: 853 NDRQAADRAYRIGQERKVEVIKLITKNSIDEDMLEIGLTKLQLDDMV 899


>gi|255724726|ref|XP_002547292.1| TATA-binding protein associated factor MOT1 [Candida tropicalis
           MYA-3404]
 gi|240135183|gb|EER34737.1| TATA-binding protein associated factor MOT1 [Candida tropicalis
           MYA-3404]
          Length = 648

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 69/258 (26%)

Query: 2   KQYHKF---QRELY-CDLQGENIE-AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K Y  F   Q+E    ++QG   E   +         +L N        +H K     K 
Sbjct: 300 KLYKDFAKSQKESIKSEVQGSEKEGKTHVFQALQYMRKLCNHPSLVMSPQHPKYPEINKF 359

Query: 57  -----KALEVIIEKA---------------------------------------NAAPII 72
                 +L+ I                                           +    +
Sbjct: 360 LVSRNSSLDDIEHAPKLLSLKNLLLECGIGTQDSDYNKSTKKKNQQLISAEGVISQHRAL 419

Query: 73  VAYHFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
           +       L  ++                            ++++N +  I +L      
Sbjct: 420 IFCQLKDMLDMVENDLLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKV 479

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI ++T++E
Sbjct: 480 GGLGLNLT-GADTVIFVEHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKDTLEE 533

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++   + K  I   ++N
Sbjct: 534 KIMGLQKFKMNIASTIVN 551


>gi|260942857|ref|XP_002615727.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
 gi|238851017|gb|EEQ40481.1| hypothetical protein CLUG_04609 [Clavispora lusitaniae ATCC 42720]
          Length = 343

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 11/177 (6%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             + A    + LQ   G +     K    +HD        +I       + +   F +  
Sbjct: 63  KLSVAFPDKQLLQYDCGKLQ----KLATLLHDLVANGHRALIFTQMTKVLDILEQFLNFR 118

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       ++      +++N + KIP+      S G G+NL  G + ++F+   W+
Sbjct: 119 GYRYMRLDGATKIEDRQLMTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWN 177

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +++    R  + G  R V +Y  +++ TI+  +L++   K  + ++++  
Sbjct: 178 PA-----MDKQCQDRCHRIGQMRDVHIYRFVSEYTIESNILKKANQKRQLDNVVIQE 229


>gi|261326898|emb|CBH09871.1| transcription activator, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 948

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ ++ +   N    ++  +F   L  LQ                    +   
Sbjct: 520 PSGKMIELDRMLREFHMNGHRCLIFSNFTCVLDLLQGLCILRDYSHERIDGSAQRVEREL 579

Query: 100 TIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           ++  +N     +        S G G+ L  G +I++ F   ++ +     ++R    R  
Sbjct: 580 SMARFNGPASKVFVFLISTMSGGVGITLT-GADIVILFDANFNPQ-----MDRQAADRAH 633

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V V+ L  + T++E +      + ++ + +++ 
Sbjct: 634 RIGQTRTVRVFRLCCKETVEERIQDIALRRLSLGEFVVDG 673


>gi|153792503|ref|NP_001093563.1| DNA excision repair protein ERCC-6-like [Danio rerio]
 gi|182645387|sp|A2BGR3|ERC6L_DANRE RecName: Full=DNA excision repair protein ERCC-6-like; AltName:
           Full=ATP-dependent helicase ERCC6-like
 gi|122890885|emb|CAM14199.1| novel protein [Danio rerio]
 gi|122891292|emb|CAM13192.1| novel protein [Danio rerio]
          Length = 1451

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 65/243 (26%), Gaps = 54/243 (22%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
            Y+KF       ++       +  ++     +L +      +    +             
Sbjct: 394 IYNKFI--SLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVH 451

Query: 52  ---------------------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K++ +  ++E         ++       L  +++  
Sbjct: 452 SDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVL 511

Query: 89  PQGRTL-----------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             +    I  +  + +  +        G G+ L  G N +V F 
Sbjct: 512 RNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLT-GANRVVIFD 570

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   V R  + G    V +Y LI   T++E + +R   K ++      
Sbjct: 571 PSWNPAT-----DAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTG 625

Query: 197 ALK 199
             K
Sbjct: 626 DKK 628


>gi|268531852|ref|XP_002631054.1| C. briggsae CBR-BTF-1 protein [Caenorhabditis briggsae]
          Length = 1510

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +      +  +N +  I +L       G GLNL  G + ++F    W+      M +  
Sbjct: 1335 PVGDRMKMVNRFNEDKTIEVLILTTHVGGVGLNLT-GADTVIFMDHDWNP-----MKDLQ 1388

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + R  + G  R V VY LI Q T++E V+   + K      L+ A     + +
Sbjct: 1389 AIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTM 1442


>gi|190406667|gb|EDV09934.1| hypothetical protein SCRG_05653 [Saccharomyces cerevisiae RM11-1a]
 gi|259144692|emb|CAY77633.1| Fun30p [Saccharomyces cerevisiae EC1118]
          Length = 1131

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 32   CLQLANGAVYY---DEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ 85
              +L           +  + + +   KI AL+ +++         +++   F   L  L+
Sbjct: 924  LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 983

Query: 86   K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                              ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 984  MVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINL-VCANNVII 1042

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  + V +  LI +++I+E + Q  + K  +   +
Sbjct: 1043 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 1097

Query: 195  LNALKKETI 203
                K + +
Sbjct: 1098 SEDKKSQDV 1106


>gi|19075231|ref|NP_587731.1| fun thirty related protein Fft2 [Schizosaccharomyces pombe 972h-]
 gi|74676118|sp|O74842|FFT2_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase fft2; AltName:
            Full=Fun thirty-related protein 2
 gi|3668152|emb|CAA21109.1| fun thirty related protein Fft2 [Schizosaccharomyces pombe]
          Length = 1284

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 32   CLQLANGA--VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ-- 85
              +L      +     K    +   KI+ L+ ++   K   + I++   F   L  L+  
Sbjct: 900  LHRLCRSFPTLQSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQV 959

Query: 86   -------KAFPQGRTLDK-DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                        G T  +     I ++  E  + +      + G G+NL    N+++ + 
Sbjct: 960  LDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINL-ACANVVILYD 1018

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++  +     +     R  + G  R V V  LI  NTI+E + +   TK  +   L +
Sbjct: 1019 CSYNPFD-----DLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSS 1073

Query: 197  ALKKE 201
              K  
Sbjct: 1074 DGKDR 1078


>gi|45187775|ref|NP_983998.1| ADL098Cp [Ashbya gossypii ATCC 10895]
 gi|44982536|gb|AAS51822.1| ADL098Cp [Ashbya gossypii ATCC 10895]
          Length = 804

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 78/220 (35%), Gaps = 36/220 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HD 53
           K Y +    ++ +L+ + ++     +  ++  Q+ +    +       E           
Sbjct: 509 KLYEQ---HIHKELRNKRLQ-----NLMMQLRQIVDSTFLFYFPYLKAEDLQLPVLLQTS 560

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCT 100
            K++ L+ ++ +  A    +++   F S L  ++                     +    
Sbjct: 561 GKLQILQQLLPRLLAAKHKVLIFSQFVSMLDLIEDWCELNNYSACRIDGSMDNETRREQI 620

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                +G    L      + G G+NL    + ++ F   W+ +     ++   + R  + 
Sbjct: 621 NSFSEKGSPHSLFLLSTRAGGLGINLTA-ADSVILFDNDWNPQ-----VDLQAMDRSHRI 674

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G +  V VY L    T++ ++L R   K  ++ L++   K
Sbjct: 675 GQQHPVIVYRLYCDKTVESVILARATNKRKLEQLVIQMGK 714


>gi|256272274|gb|EEU07259.1| Fun30p [Saccharomyces cerevisiae JAY291]
          Length = 1131

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 32   CLQLANGAVYY---DEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ 85
              +L           +  + + +   KI AL+ +++         +++   F   L  L+
Sbjct: 924  LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 983

Query: 86   K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                              ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 984  MVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINL-VCANNVII 1042

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  + V +  LI +++I+E + Q  + K  +   +
Sbjct: 1043 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 1097

Query: 195  LNALKKETI 203
                K + +
Sbjct: 1098 SEDKKSQDV 1106


>gi|303316021|ref|XP_003068015.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107691|gb|EER25870.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1142

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K++ L  ++++   N   I++   F             L           +
Sbjct: 931  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVMDILEQVLETLEIRFFRLDGTTS 990

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  + E   +P+      + G G+NL    N ++ F   ++ ++     +   
Sbjct: 991  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQD-----DIQA 1044

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1045 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLVLDQRV 1086


>gi|291393761|ref|XP_002713270.1| PREDICTED: RAD54-like 2 [Oryctolagus cuniculus]
          Length = 1467

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 840

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 841 -----CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893


>gi|148689217|gb|EDL21164.1| Rad54 like 2 (S. cerevisiae) [Mus musculus]
          Length = 1466

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 839

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 840 -----CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 892


>gi|126090612|ref|NP_109655.2| helicase ARIP4 [Mus musculus]
          Length = 1467

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 840

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 841 -----CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893


>gi|74137993|dbj|BAE25404.1| unnamed protein product [Mus musculus]
          Length = 1434

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 749 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 807

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 808 -----CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 860


>gi|81916664|sp|Q99NG0|ARIP4_MOUSE RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2; AltName: Full=Steroid receptor-interacting
           SNF2 domain-containing protein-like
 gi|12331285|emb|CAC24703.1| steroid receptor-interacting SNF2 domain protein [Mus musculus]
 gi|126631448|gb|AAI33715.1| RAD54 like 2 (S. cerevisiae) [Mus musculus]
          Length = 1466

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 839

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 840 -----CHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 892


>gi|39974235|ref|XP_368508.1| hypothetical protein MGG_00736 [Magnaporthe oryzae 70-15]
 gi|145018332|gb|EDK02611.1| hypothetical protein MGG_00736 [Magnaporthe oryzae 70-15]
          Length = 1685

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 65/198 (32%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
             ++  +       Y  +     +              K+  L  ++ K       +++  
Sbjct: 1116 LMQLRKCLCHPFVYSRDVEDTTLDPETMQRNLIEASPKLVLLSRMLPKLKEKGHRVLIFS 1175

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F   L  ++        L +              I E+N     L        + G G+
Sbjct: 1176 QFLDQLDIIEDFLAGLGFLYQRLDGTMSSLEKQKRIDEFNAPSSELFAFLLSTRAGGVGI 1235

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +     +   ++R  + G    V  + L+ + +++E ++Q 
Sbjct: 1236 NL-ATADTVIIMDPDFNPHQ-----DLQALSRAHRIGQMNKVLCFQLMTKGSVEEKIMQI 1289

Query: 184  LRTKSTIQDLLLNALKKE 201
             R K  +  +L+ A+  E
Sbjct: 1290 GRKKMALDHVLIEAMDDE 1307


>gi|302802510|ref|XP_002983009.1| hypothetical protein SELMODRAFT_117536 [Selaginella moellendorffii]
 gi|300149162|gb|EFJ15818.1| hypothetical protein SELMODRAFT_117536 [Selaginella moellendorffii]
          Length = 975

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           K Q+  Y  L  ++++A N+        +  ++  +  N    +                
Sbjct: 348 KMQKHYYGSLLQKDLDAINTGGERRRLLNIAMQLKKCCNHPYLFQGAEPGPPYLSGEHLV 407

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                    +  
Sbjct: 408 ENSGKMVLLDKLLPKLKQRDSRVLIFSQMTRLLDILEDYCIYRTYQYCRIDGKTSGEERE 467

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I+ +N+      L      + G G+NL    +I++ +   W+ +      +     R 
Sbjct: 468 AAIESFNKEGSEKFLFLLSTRAGGLGINL-ATADIVILYDSDWNPQA-----DLQAQDRA 521

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    + TI+E V++R   K  +  L++   +
Sbjct: 522 HRIGQKKEVQVFRFCTELTIEEKVIERAYKKLALDALVIQQGR 564


>gi|255075383|ref|XP_002501366.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226516630|gb|ACO62624.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 961

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 9/191 (4%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           R      + + + + +  S+     Q  +        K   ++   K   L   I  +  
Sbjct: 759 RNAAAQHKKDELPSKSILSRID-LSQYTSSVKVDALLKGLNDMRSGKNGHLNKAIVFSQY 817

Query: 69  APIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQ 126
             +I    +     R   A   G   + +    ++ +  +  + ++     S G GLNLQ
Sbjct: 818 TSMIEIVDWRLKKDRFTVAKLLGSMPITQRAANLKAFREDPNVSVILMSLKSGGEGLNLQ 877

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              N +     WW+            + R  + G  R V       ++TI+E ++Q    
Sbjct: 878 A-ANYVFVLEPWWNPAVEM-----QAIMRAHRIGQTRGVTAVRFSTKDTIEERMMQLQEK 931

Query: 187 KSTIQDLLLNA 197
           K  + +  ++ 
Sbjct: 932 KKLVFEGCMDG 942


>gi|303317828|ref|XP_003068916.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240108597|gb|EER26771.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 961

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 45/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE-----------------------KHWKEVHDEKIK 57
            + ++        +L N       +                       +H+      KI+
Sbjct: 588 NSESALQLITILKKLCNSPSLLTLKVLKDENPNCTISSLISTLPPNLLRHFSPASSGKIR 647

Query: 58  ALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            L+ ++   ++     I++  ++ S L  L                     K    + ++
Sbjct: 648 VLDQLLHNLHSTTSEKIVLVSNYTSTLNLLAALLSSLSLPYLRLDGSTPASKRQFLVDDF 707

Query: 105 N---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           N               + G GLNL  G + LV F + W+        +   + R  + G 
Sbjct: 708 NRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPAT-----DIQAMARIHRDGQ 761

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 762 KRHCHIYRMLLRGGLEEKIWQRQVTKLGLADSVMD 796


>gi|6319300|ref|NP_009383.1| Fun30p [Saccharomyces cerevisiae S288c]
 gi|401438|sp|P31380|FUN30_YEAST RecName: Full=Uncharacterized ATP-dependent helicase FUN30
 gi|171856|gb|AAC04938.1| Fun30p [Saccharomyces cerevisiae]
 gi|285810183|tpg|DAA06969.1| TPA: Fun30p [Saccharomyces cerevisiae S288c]
          Length = 1131

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 32   CLQLANGAVYY---DEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ 85
              +L           +  + + +   KI AL+ +++         +++   F   L  L+
Sbjct: 924  LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 983

Query: 86   K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                              ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 984  MVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINL-VCANNVII 1042

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  + V +  LI +++I+E + Q  + K  +   +
Sbjct: 1043 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 1097

Query: 195  LNALKKETI 203
                K + +
Sbjct: 1098 SEDKKSQDV 1106


>gi|296235754|ref|XP_002763033.1| PREDICTED: DNA excision repair protein ERCC-6-like, partial
           [Callithrix jacchus]
          Length = 1229

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 354 EIYRKFV--SLDHIKELLMETRSPLAELGILKKLCDHPRLLSARACGLLNLGTVTFSAQD 411

Query: 43  ----DEEKHWKEVH----------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
               ++      +             K+  L  ++++        +V       L  +++
Sbjct: 412 GNEGEDSPDMDHIDQITDDTLMEESGKMIFLMGLLKRLRDEGHQTLVFSQSRQILNIIER 471

Query: 87  AFPQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             L +    I          +        G GL L      +V 
Sbjct: 472 LLKNRHFKILRIDGTITHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVI 530

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  V VY LI   T++E + +R   K ++    
Sbjct: 531 FDPSWNPAT-----DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQT 585

Query: 195 LNALK 199
               K
Sbjct: 586 TGEKK 590


>gi|149412153|ref|XP_001506490.1| PREDICTED: similar to hCG1997495 [Ornithorhynchus anatinus]
          Length = 1466

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       +  +    I ++N+     + L      +   G+NL  G N +V F  
Sbjct: 774 RNHSYYRLDGSTSASERERLINQFNDPSSSSVWLFLLSTRAGCLGVNL-IGANRVVVFDA 832

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K+   +Y L++  T+++ +  R  +K  + D +++ 
Sbjct: 833 SWNP-----CHDAQAVCRVYRYGQKKPCHIYRLVSDFTLEKKIYDRQISKQGMSDRVVDD 887

Query: 198 LK 199
           L 
Sbjct: 888 LN 889


>gi|326473174|gb|EGD97183.1| hypothetical protein TESG_04598 [Trichophyton tonsurans CBS 112818]
          Length = 1422

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 847  KQSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKL 906

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                 T  K    I  +N         
Sbjct: 907  QERGHRVLIFSQFLDFLDIVEDFLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAF 966

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 967  LLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 1020

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 1021 RGSAEEKIMQIGKKKMALDHVLIERM 1046


>gi|291239296|ref|XP_002739559.1| PREDICTED: Lodestar protein-like [Saccoglossus kowalevskii]
          Length = 1134

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 69/246 (28%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----------------------- 54
                  +     ++  Q         E    +  + +                       
Sbjct: 879  GTQNMAHVLVWLLRLRQCCGHLSLLKEAVDIESCYSDGVDLSLVDQMKDLCVDESKPIDS 938

Query: 55   ---------------------KIKALEVIIEKA-------NAAPIIVAYHFNSDLARLQK 86
                                 K+K +   ++              ++   +   L  +  
Sbjct: 939  EISSGIVKDKSLLFEVSAMSTKVKKVMDGLKDIRAKSPAGKPMKTVIVSQWTKMLDIMVH 998

Query: 87   A----------FPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
                            T      +++ +N+      ++     + G GLNL  GGN L  
Sbjct: 999  HLKENGFKYCVIQGNVTPKARSESVENFNKNPKGPEVMLVSLRAGGVGLNL-IGGNHLFL 1057

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + W+    QQ  +RI      + G ++ VF++  + +NT++E +L+  + K+ +   +
Sbjct: 1058 LDMHWNPALEQQACDRI-----YRVGQEKEVFIHKFVCKNTVEEKILELQKKKTNLATNV 1112

Query: 195  LNALKK 200
            L+  + 
Sbjct: 1113 LSGDRA 1118


>gi|157878809|ref|XP_001687416.1| DNA excision/repair protein SNF2 [Leishmania major strain Friedlin]
 gi|321438075|emb|CBZ11827.1| putative DNA excision/repair protein SNF2 [Leishmania major strain
           Friedlin]
          Length = 925

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 39/208 (18%)

Query: 22  AFNSASKTVKCLQLANGAV----------------YYDEEKHWKEVHD-EKIKALEVIIE 64
           + N         Q+ +                   Y        ++    K+     ++ 
Sbjct: 431 STNPLLLLTMLSQICSHPWLSLLDEAFAAALARNPYKAPVAEMGDIFSGAKLWVALQLLL 490

Query: 65  KA--NAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDP--CTIQEWNEGKIPL 111
                    +V       L          RL      G T  +       +  N+  + +
Sbjct: 491 HCVSEQRKTLVFSRSRRILRLLSFLLQEWRLTHTQVDGDTPSERRCAEVDRFNNDAGVWV 550

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                   G GL      + +V     W+        +   V R  + G +R V V+ L+
Sbjct: 551 CLLTTQVGGVGLTF-NAASAVVLLDPSWNPSA-----DAQAVDRVHRIGQRRDVVVFRLV 604

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +T++E V +    K       L ++K
Sbjct: 605 TCDTVEEKVYRNQIFKRM---AALQSMK 629


>gi|194384680|dbj|BAG59500.1| unnamed protein product [Homo sapiens]
          Length = 1014

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 42/237 (17%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 687 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 746

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 747 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 806

Query: 98  ----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   WD +   
Sbjct: 807 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWDPQN-- 863

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              +     R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 864 ---DLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 917


>gi|50310795|ref|XP_455420.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644556|emb|CAG98128.1| KLLA0F07513p [Kluyveromyces lactis]
          Length = 1048

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 32   CLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK 86
              +L      +Y  + +  + ++  K++ L+ ++ K        ++V   F   L  L+ 
Sbjct: 848  LHKLCCKFPSLYKFKLQSDEWMNSGKVEQLKSVLHKIIDIQHEKVLVFSLFTQVLDILEF 907

Query: 87   A-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                          Q +  D+     + + +  IP+      + G G+NL    N ++ F
Sbjct: 908  VLSTLNIKFLRLDGQTQVNDRQSLIDRFYEDDTIPVFLLSTKAGGFGINL-VCANNVIIF 966

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               ++  +     +R    R  + G  + V V  LI+++TI+E +L   + K  +   + 
Sbjct: 967  DQSFNPHD-----DRQAADRAHRVGQTKEVQVTTLISRDTIEEKILHLAKNKLALDTHIS 1021

Query: 196  NALKK 200
               KK
Sbjct: 1022 QEDKK 1026


>gi|30686918|ref|NP_850847.1| CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding /
           DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
 gi|332005205|gb|AED92588.1| chromatin remodeling factor17 [Arabidopsis thaliana]
          Length = 1072

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N         +  ++  +  N    +                
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                    +  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N I+  V++R   K  +  L++   +
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGR 648


>gi|320032369|gb|EFW14322.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1132

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K++ L  ++++   N   I++   F             L           +
Sbjct: 921  KNDEWMNSGKVEKLCELLKQYTENGDRILIFSQFTMVVDILEQVLETLEIRFFRLDGTTS 980

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  + E   +P+      + G G+NL    N ++ F   ++ ++     +   
Sbjct: 981  VEDRQSILDAFYEQVDVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQD-----DIQA 1034

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1035 ENRAHRVGQTREVEVVRLVTKGTIEEQIYALGQTKLVLDQRV 1076


>gi|302771908|ref|XP_002969372.1| hypothetical protein SELMODRAFT_440815 [Selaginella moellendorffii]
 gi|300162848|gb|EFJ29460.1| hypothetical protein SELMODRAFT_440815 [Selaginella moellendorffii]
          Length = 1544

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 68/231 (29%), Gaps = 36/231 (15%)

Query: 2   KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y       + DL         +  +  V+  +  N    ++   H    +        
Sbjct: 696 QYYKWILERNFSDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGANATMTDNSR 755

Query: 61  -----------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                            ++  K     +++       L  L           +       
Sbjct: 756 VQRVVLSSGKLVLLDKLLVRLKETGHRVLIFSQMVKMLDILADYLRLRGFQFQRLDGSTK 815

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 816 HHLRQQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 869

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            ++R  + G +  V +Y  +   +++E +L+R + K  +  L++  L  + 
Sbjct: 870 AMSRAHRIGQEFVVNIYRFVTCRSVEEDILERAKKKMVLDHLVIQKLNAQG 920


>gi|297812047|ref|XP_002873907.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319744|gb|EFH50166.1| hypothetical protein ARALYDRAFT_488746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1074

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N         +  ++  +  N    +                
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                    +  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N I+  V++R   K  +  L++   +
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGR 648


>gi|257463846|ref|ZP_05628233.1| SWF/SNF family helicase [Fusobacterium sp. D12]
 gi|317061380|ref|ZP_07925865.1| metal dependent hydrolase [Fusobacterium sp. D12]
 gi|313687056|gb|EFS23891.1| metal dependent hydrolase [Fusobacterium sp. D12]
          Length = 1134

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +   Y  +     E       F       +  Q+ +       E     +   K
Sbjct: 914  KFYEERRNYYYNMIHAGIREKGLGKVQFFILQALNELRQITS-----CPEIKNAYISSSK 968

Query: 56   IKALEVIIEK--ANAAPIIVAYHFN---------SDLARLQKAFPQGRTLDKDPCTIQEW 104
             + L   I +   N   ++V  ++           +   +      G T D+     +  
Sbjct: 969  KEMLLEQISEAVENDHKVLVFTNYIGSIDTICKSLEEQEIPYLSMTGSTKDRQQLVNKFQ 1028

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 1029 KNEKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 1082

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VF Y LI ++TI+E +LQ    KS + D +++   
Sbjct: 1083 VFSYKLILKDTIEEKILQLQELKSKLLDDVISEDN 1117


>gi|121708629|ref|XP_001272195.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            clavatus NRRL 1]
 gi|119400343|gb|EAW10769.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            clavatus NRRL 1]
          Length = 1522

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDE-----------EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y E            +        K++ L++++ K       +++  
Sbjct: 970  LMQLRKCLCHPFVYSEAIEERTSNATVSQRHLTEASGKLQLLQIMLPKLKERGHRVLIFS 1029

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I E+N    P         S G G+
Sbjct: 1030 QFLDNLDIVEDFLDGLGLLHRRLDGRMNSLEKQKRIDEYNAENSPYFAFLLSTRSGGVGI 1089

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         ++R  + G K  V V+ L+ + +++E ++Q 
Sbjct: 1090 NL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMTRGSVEEKIMQI 1143

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L++ +  E
Sbjct: 1144 GKKKMVLDHVLIDRMISE 1161


>gi|323337858|gb|EGA79098.1| Chd1p [Saccharomyces cerevisiae Vin13]
          Length = 1329

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +   +  + +N    +D  +              
Sbjct: 624 EYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 683

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 684 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDG 743

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                +   +I  +N       +      + G G+NL    + +V F   W+ +      
Sbjct: 744 TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA----- 797

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 798 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845


>gi|297837353|ref|XP_002886558.1| hypothetical protein ARALYDRAFT_475211 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297332399|gb|EFH62817.1| hypothetical protein ARALYDRAFT_475211 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1281

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 17/144 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+ +        +              +Q++N   ++ ++    
Sbjct: 1124 GEKAIVFSQWTKMLDLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSL 1183

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V     ++T+
Sbjct: 1184 KAASLGLNMVAACH-VLMLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVVRFTVKDTV 1237

Query: 177  DELVLQRLRTKSTIQDLLLNALKK 200
            ++ +L   + K  +        +K
Sbjct: 1238 EDRILALQQKKRMMVASAFGEDEK 1261


>gi|296005052|ref|XP_002808863.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|263429743|sp|C0H4W3|HEPF1_PLAF7 RecName: Full=Probable ATP-dependent helicase PF08_0048
 gi|225632260|emb|CAX64141.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
          Length = 2082

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                    +   K+ ALE ++   K      ++   F   L  L+               
Sbjct: 1757 FPLNKDISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDG 1816

Query: 91   GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +++    + ++N  K I +  +   S   G+NL    N+++F+   W+       I+
Sbjct: 1817 STKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTA-ANVVIFYDTDWNPS-----ID 1870

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +  + R  + G  + V V+  + + T++E + ++   K  + ++ +N
Sbjct: 1871 KQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICIN 1917


>gi|15898473|ref|NP_343078.1| hypothetical protein SSO1655 [Sulfolobus solfataricus P2]
 gi|13814902|gb|AAK41868.1| Helicase of the snf2/rad54 family (carboxy end fragment),
           hypothetical [Sulfolobus solfataricus P2]
          Length = 124

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D    +  N   +  +     + G G+NL    N ++ F  WW+       +E     R 
Sbjct: 6   DDIISKFQNNPSVKFIVLSVKAGGFGINLTS-ANRVIHFDRWWNPA-----VEDQATDRV 59

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V V+ LI+  T++E + Q L  K ++   ++++
Sbjct: 60  YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 100


>gi|47208011|emb|CAF91219.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 454

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 19/173 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP-------- 89
             + +          K   L+ ++   K     +++     S L  L             
Sbjct: 222 RKFLQIDEQLVQSSGKFLILDRMLPALKRRGHKVLIFSQMTSILDILMDYCFLRGFQYSR 281

Query: 90  --QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                T       I ++  + ++ L      + G G+NL    + ++ F   W+ +    
Sbjct: 282 LDGSMTFADREENITKFSKDPQVFLFLLSTRAGGLGINLTA-ADTVIIFDSDWNPQA--- 337

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             +     R  + G  + V VY L+  NTID+ +L+R   K  ++ ++++  K
Sbjct: 338 --DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKILERASNKRKLEQMVIHKNK 388


>gi|115475083|ref|NP_001061138.1| Os08g0180300 [Oryza sativa Japonica Group]
 gi|46805057|dbj|BAD17038.1| putative SNF2 domain-containing protein [Oryza sativa Japonica Group]
 gi|113623107|dbj|BAF23052.1| Os08g0180300 [Oryza sativa Japonica Group]
 gi|215712333|dbj|BAG94460.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640021|gb|EEE68153.1| hypothetical protein OsJ_26263 [Oryza sativa Japonica Group]
          Length = 1030

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  L+ +        +              ++++N + ++ ++     +
Sbjct: 877  KAIVFSQWTGMLDLLELSLNSNLIQYRRLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKA 936

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+++
Sbjct: 937  GNLGLNMVAACH-VILLDLWWNP-----YAEDQAIDRAHRIGQTRPVTVSRLTIKDTVED 990

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 991  RILALQEEKRAMVSSAFGEDK 1011


>gi|119186353|ref|XP_001243783.1| hypothetical protein CIMG_03224 [Coccidioides immitis RS]
          Length = 964

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 45/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE-----------------------KHWKEVHDEKIK 57
           ++ ++        +L N       +                       +H+      KI+
Sbjct: 591 DSESALQLITILKKLCNSPSLLTLKVLKDENPNCTISSLISTLPPNLLRHFSPASSGKIR 650

Query: 58  ALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            L+ ++   ++     I++  ++ S L  L                     K    + ++
Sbjct: 651 VLDQLLHNLHSTTSEKIVLVSNYTSTLNLLAALLSSLSLPYLRLDGSTPASKRQFLVDDF 710

Query: 105 N---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           N               + G GLNL  G + LV F + W+        +   + R  + G 
Sbjct: 711 NRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPAT-----DIQAMARIHRDGQ 764

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 765 KRHCHIYRMLLRGGLEEKIWQRQVTKLGLADSVMD 799


>gi|326428818|gb|EGD74388.1| hypothetical protein PTSG_12442 [Salpingoeca sp. ATCC 50818]
          Length = 1313

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRT 93
           H       K++    ++E+        ++       L               +       
Sbjct: 591 HDVVKQSGKLRFCVHLLEQLRQEGHRALLFSQSLKMLDIISAVLNEQGVKHSRLHGAISD 650

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D+    + ++N +  I  +       G GL L  G + ++ F   W+        +   
Sbjct: 651 TDERQKIVDDFNSDASIFCMLLTTQVGGVGLTLT-GADRVIIFDPSWNPST-----DAQA 704

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V R  + G  R V VY LI   TI+E + ++   K  + 
Sbjct: 705 VDRAYRIGQTRRVVVYRLITCGTIEEKIYRKQVFKDGLS 743


>gi|302920912|ref|XP_003053175.1| hypothetical protein NECHADRAFT_105989 [Nectria haematococca mpVI
            77-13-4]
 gi|256734115|gb|EEU47462.1| hypothetical protein NECHADRAFT_105989 [Nectria haematococca mpVI
            77-13-4]
          Length = 1144

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDP 98
               K+ A   ++++ N      IV   +             +     + +    +     
Sbjct: 970  PAAKVTACMDLLKQINETGEKTIVFSQWTLLLDLLQVAMSHEKLEKPERYDGSMSATHRN 1029

Query: 99   CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               + + +   + ++     +   GLNL    + ++    +W+       IE   V R  
Sbjct: 1030 IAARNFRDRKDVKVMLVSLRAGNAGLNLTA-ASRVIIMDPFWNP-----YIEMQAVDRAY 1083

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G ++ V VY ++ + T+++ ++     K  I +  L+  +   I
Sbjct: 1084 RIGQQKEVKVYRILTKKTVEDRIVALQNQKKEIVEAALDENEGRQI 1129



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 5/68 (7%), Positives = 15/68 (22%), Gaps = 6/68 (8%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y + ++             +I     N     ++  Q         +            +
Sbjct: 700 YDQLEKNAQVQFSKYLRAGSIGKNYSNILVLLLRMRQACCHPHLNLDVDDAAPNSTISNE 759

Query: 58  ALEVIIEK 65
             E ++  
Sbjct: 760 EKEELVRS 767


>gi|47211649|emb|CAF94986.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1320

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   T  +    I ++N+     + +      +   G+NL  G N +V F   W+ 
Sbjct: 869 YYRLDGSTTASERERLINQFNDPSNTSVWVFLLSTRAGCLGVNL-IGANRVVVFDASWNP 927

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +   V R  + G ++   +Y L+   T+++ +  R  +K  + D +++ 
Sbjct: 928 -----CHDAQAVCRVYRYGQRKPCHIYRLVCDFTLEKKIYDRQISKQGMSDRVVDD 978


>gi|68477713|ref|XP_717169.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
 gi|68477876|ref|XP_717090.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
 gi|46438788|gb|EAK98114.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
 gi|46438870|gb|EAK98195.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
          Length = 796

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 28/201 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKA 66
           +    F + +      ++ N      +++ +K++ +EK                ++   +
Sbjct: 472 KKFNQFEAFTMINLFKKICNSPSLLADDELFKKIVEEKFNLGMASGKINILVPLLLEIAS 531

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAH 115
               I++  ++   L  L++   +              +     + ++N    I +    
Sbjct: 532 LGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSKLVNQFNTNPDINVFLLS 591

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             S G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y L     
Sbjct: 592 SKSGGMGINL-VGASRLILFDNDWNPATDLQSMSRI-----HRDGQLKPCFIYRLFTTGC 645

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           IDE + QR   K+ +    L+
Sbjct: 646 IDEKIFQRQLVKNKLSSKFLD 666


>gi|157870556|ref|XP_001683828.1| DNA repair protein [Leishmania major strain Friedlin]
 gi|68126895|emb|CAJ04924.1| putative DNA repair protein [Leishmania major strain Friedlin]
          Length = 1092

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAF----------P 89
             +      K +H  K+ A+   IE+      ++V   F S L   Q              
Sbjct: 911  IFARLDPQKPLHGTKLDAIANYIEEVPKDEKVVVFSQFGSMLDLTQYWLQRRSIRAVKLC 970

Query: 90   QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               TL +    +Q + ++  + ++     + G GLNLQ   N +V    WW+        
Sbjct: 971  GSLTLTQRQSVLQAFLHDQNVRVILISLKAGGEGLNLQ-VANHVVLTDPWWNPAVEM--- 1026

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V R  + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1027 --QAVQRAHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|322695761|gb|EFY87564.1| DNA repair and recombination protein RAD5B [Metarhizium acridum CQMa
            102]
          Length = 1030

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDP 98
              K +A+  I++     + + +++   + S L  +Q                  T  +D 
Sbjct: 857  SSKTEAMMQILQATLNKHGSKVVIFSQWTSFLNIVQNQLDGAGIKYSRIDGSMNTEKRDR 916

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  N+ +  ++ A  A C  GLNL    + ++    WW        IE   + R  +
Sbjct: 917  AVQALDNDAETRVMLASLAVCSVGLNLVS-ADTVILSDSWWAPA-----IEDQAIDRVHR 970

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G  R   V+ LI + +++E VL   + K  +        +++  H
Sbjct: 971  LGQTRKTTVWRLIVEGSVEERVLDIQKEKRDLVTKAFQEKERKGKH 1016


>gi|302307681|ref|NP_984405.2| ADR309Wp [Ashbya gossypii ATCC 10895]
 gi|299789116|gb|AAS52229.2| ADR309Wp [Ashbya gossypii ATCC 10895]
          Length = 1486

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 66/177 (37%), Gaps = 11/177 (6%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               + A      LQ   G +          +   K +    +I       + +   F + 
Sbjct: 1200 TKLSIAFPDKSLLQYDCGKLQ----SLAVLLRRLKEEGHRALIFTQMTKVLDILEQFLNY 1255

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               L         ++      + +N + +I +      S G G+NL  G + ++F+   W
Sbjct: 1256 HGYLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLT-GADTVIFYDSDW 1314

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1315 NPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNIVIQ 1366


>gi|169767388|ref|XP_001818165.1| DNA-dependent ATPase [Aspergillus oryzae RIB40]
 gi|83766020|dbj|BAE56163.1| unnamed protein product [Aspergillus oryzae]
          Length = 957

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N                              +H+      KI+ 
Sbjct: 559 NSENALQLITILKKLCNSPSLLSPRNVDEKPSETIAALLSSLPPNLLRHFSPSSSAKIRV 618

Query: 59  LEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++   +   +  +++  ++ S L  L                     K    ++++N
Sbjct: 619 LDQLLHILHTSTSEKVVLVSNYTSTLNLLATLLTSLSLPFLRLDGSTPAQKRQSLVEDFN 678

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +         + G GLNL  G + L+ F + W+        +   + R  + G K
Sbjct: 679 RFPTNRCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARIHRDGQK 732

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 733 RHCRIYRILLKGSLEEKIWQRQVTKLGLADSVME 766


>gi|67525031|ref|XP_660577.1| hypothetical protein AN2973.2 [Aspergillus nidulans FGSC A4]
 gi|40744368|gb|EAA63544.1| hypothetical protein AN2973.2 [Aspergillus nidulans FGSC A4]
 gi|259486081|tpe|CBF83639.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
            AFUA_3G08400) [Aspergillus nidulans FGSC A4]
          Length = 1107

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +   K+  L  ++   K N   ++V   F            +            +
Sbjct: 918  KNNEWMDSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTS 977

Query: 94   LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  +     IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 978  VEDRQSIMDTFHENTDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1031

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1032 ENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAV 1073


>gi|253581922|ref|ZP_04859146.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
 gi|251836271|gb|EES64808.1| SWF/SNF family helicase [Fusobacterium varium ATCC 27725]
          Length = 926

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 28/213 (13%)

Query: 2   KQYHKFQRELYCDLQ------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y  +       G     F       +  Q+ +       E     V   K
Sbjct: 706 KLYEERRSYYYKMVNSQIRENGIGKTQFFILQALNELRQITS-----CPEAKSNGVTSSK 760

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN-------SDLARLQKAF--PQGRTLDKDPCTIQEW 104
            + L   I +   N   ++V  ++         DL R    +    G T D+     +  
Sbjct: 761 REVLVNNIVEAVENGHKVLVFTNYINSIENICEDLKRYGINYLSMTGSTKDRQSLVDRFQ 820

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 821 KDNKYKVFIMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 874

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           VF Y LI ++TI+E +LQ   TKS + D L++ 
Sbjct: 875 VFSYKLILKDTIEEKILQLQDTKSKLLDNLISE 907


>gi|225463768|ref|XP_002267403.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1036

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 17/173 (9%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             + +     E+ +  V   K        E       IV   + S L  ++ +        
Sbjct: 849  CSSSAKIYTEQCYSGVGSSKQTTAYSNPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQY 908

Query: 96   KD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            +              ++++N + ++ ++     +   GLN+    ++++   LWW+    
Sbjct: 909  RRLDGTMSLASRDRAVKDFNTDPEVTVMLMSLKAGNLGLNMVA-ASLVILLDLWWNPTT- 966

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                E   V R  + G  R V V  +  ++T+++ +L     K  +       
Sbjct: 967  ----EDQAVDRAHRIGQTRPVTVSRITIKDTVEDRILALQEDKRKMVASAFGE 1015


>gi|224065816|ref|XP_002190293.1| PREDICTED: similar to hCG1997495 [Taeniopygia guttata]
          Length = 1473

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   +  +    I ++N+     + L      +   G+NL  G N +V F   W+ 
Sbjct: 791 YYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 849

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L 
Sbjct: 850 -----CHDAQAVCRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDLN 902


>gi|167535565|ref|XP_001749456.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772084|gb|EDQ85741.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1326

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 12/177 (6%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           K L          E +    +  + I     ++E+  A   +   +   +  +       
Sbjct: 821 KLLMECIVP-KAVELQEKVLIFSQSIP-ALDLLEQYLARVNVPNSNERWEKDKHYFRLDG 878

Query: 91  GRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     I+++N+        L      +   G+NL    N +V     W+      
Sbjct: 879 STHATSRTKLIEDFNDTDVNDNCHLFLLSTRAGSLGINLTA-ANRVVILDASWNPTH--- 934

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +   V R  + G  R   +Y LIA  T++E +  R   K  +   +++    E +
Sbjct: 935 --DSQAVCRVYRYGQSRNCHIYRLIASGTMEETIYNRQIHKLGLSQRVVDTENPERL 989


>gi|30686915|ref|NP_568365.2| CHR17 (CHROMATIN REMODELING FACTOR17); ATP binding / DNA binding /
           DNA-dependent ATPase/ helicase/ hydrolase, acting on
           acid anhydrides, in phosphorus-containing anhydrides /
           nucleic acid binding / nucleosome binding [Arabidopsis
           thaliana]
 gi|332005204|gb|AED92587.1| chromatin remodeling factor17 [Arabidopsis thaliana]
          Length = 1069

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 78/223 (34%), Gaps = 35/223 (15%)

Query: 6   KFQRELYCDLQGENIEAFNS-------ASKTVKCLQLANGAVYYDE--------EKHWKE 50
           + Q++ Y  L  +++E  N         +  ++  +  N    +                
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLV 491

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
            +  K+  L+ ++ K     + +++       L  L+                    +  
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERD 551

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +I+ +N+      +      + G G+NL    ++++ +   W+ +     ++     R 
Sbjct: 552 ASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYDSDWNPQ-----VDLQAQDRA 605

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G K+ V V+    +N I+  V++R   K  +  L++   +
Sbjct: 606 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGR 648


>gi|327265769|ref|XP_003217680.1| PREDICTED: helicase ARIP4-like [Anolis carolinensis]
          Length = 1479

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   +  +    I ++N+     + L      +   G+NL  G N +V F   W+ 
Sbjct: 794 YYRLDGSTSASERERLINQFNDPTNTSVSLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 852

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L++  T+++ +  R  +K  + D +++ L 
Sbjct: 853 -----CHDAQAVCRVYRYGQKKPCHIYRLVSDFTLEKKIYDRQISKQGMSDRVVDDLN 905


>gi|322697346|gb|EFY89127.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
            acridum CQMa 102]
          Length = 1142

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 23/189 (12%)

Query: 28   KTVKCLQLANG--AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            K+++     N      Y        +   K+     ++ +        I+   +   L  
Sbjct: 941  KSLRLEAAKNHRAHKRYMAYLRKTWMPAAKVTECMKLLREIRETGEKTIIFSQWTLLLDL 1000

Query: 84   LQKAFPQ------------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130
            L+ A                 + D+     + + +  +  ++     +   GLNL    +
Sbjct: 1001 LEVAMWHEQFPEKPIRYDGSMSGDERSTAAKHFRDRPEYNVMLVSLRAGNAGLNLTA-AS 1059

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             ++    +W+       IE   + R  + G ++ V VY ++ Q T+++ ++     K  I
Sbjct: 1060 RVIIMDPFWNP-----YIEMQAIDRTYRIGQQKEVEVYRILTQETVEDRIVALQNKKKEI 1114

Query: 191  QDLLLNALK 199
             +  L+  +
Sbjct: 1115 VEAALDETE 1123



 Score = 38.2 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 3/57 (5%), Positives = 13/57 (22%), Gaps = 6/57 (10%)

Query: 4   YHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y + + +        L+  ++     +     ++  Q         +          
Sbjct: 708 YKQLEEKAQVVFSKYLREGSVGKNYSSILVLLLRLRQACCHPHLNLDVDDAVNPVSS 764


>gi|309365060|emb|CAP23772.2| CBR-BTF-1 protein [Caenorhabditis briggsae AF16]
          Length = 1653

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +      +  +N +  I +L       G GLNL  G + ++F    W+      M +  
Sbjct: 1478 PVGDRMKMVNRFNEDKTIEVLILTTHVGGVGLNLT-GADTVIFMDHDWNP-----MKDLQ 1531

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + R  + G  R V VY LI Q T++E V+   + K      L+ A     + +
Sbjct: 1532 AIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTM 1585


>gi|254565235|ref|XP_002489728.1| ATPase that forms a large complex, containing actin and several
            actin-related proteins [Pichia pastoris GS115]
 gi|238029524|emb|CAY67447.1| ATPase that forms a large complex, containing actin and several
            actin-related proteins [Pichia pastoris GS115]
 gi|328350146|emb|CCA36546.1| DNA helicase INO80 [Pichia pastoris CBS 7435]
          Length = 1236

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
            +   K+  L+ ++   K     ++V +     +  +++     +              + 
Sbjct: 1041 IESGKLAKLDKMLVRLKKEGHKVLVYFQMTKMMDLMEEFLTYRQYKYIRLDGSSKLSDRR 1100

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + ++ +      + G G+NL    + ++F+   W+       I+   + R  
Sbjct: 1101 DLVHDWQTKPELFVFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAH 1154

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1155 RLGQTRQVTVYRLLVRGTIEEKMRNRAKQKEHVQQVVMEG 1194


>gi|258564262|ref|XP_002582876.1| hypothetical protein UREG_07649 [Uncinocarpus reesii 1704]
 gi|237908383|gb|EEP82784.1| hypothetical protein UREG_07649 [Uncinocarpus reesii 1704]
          Length = 1123

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K++ L  +++K   N   ++V   F             L           +
Sbjct: 927  KNDEWMNSGKVEKLCELLKKFTENGDRVLVFSQFTMVMDILEHVLETLQIRFFRLDGTTS 986

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  + E   IP+      + G G+NL    N ++ F   ++ ++     +   
Sbjct: 987  VEDRQSILDAFYEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQD-----DIQA 1040

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ ++TI+E +    +TK  +   +
Sbjct: 1041 ENRAHRVGQTREVEVVRLVTKDTIEEQIYALGQTKLVLDQRV 1082


>gi|213404796|ref|XP_002173170.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212001217|gb|EEB06877.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 1246

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 32   CLQLA-NGAVYYDEE-KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNS-------- 79
              +L  N    +    K    +   KI  L+ ++   K     I++   F          
Sbjct: 860  LHKLCRNFPSLHPYMLKDDPWMKSGKIDVLKKLLPKMKEQGDRILIFSQFTQVIDILEQV 919

Query: 80   --DLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               L            ++     I ++  E  I +      + G G+NL    N+++ + 
Sbjct: 920  LDTLKITYTRLDGSTQVETRQDIIDQFHRETDITVFLLSTKAGGFGINL-ACANVVILYD 978

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++  +     +     R  + G  + V V  LI +NT++E + +   TK  +   L +
Sbjct: 979  CSYNPFD-----DLQAEDRAHRVGQTKQVTVIRLITKNTVEEYIQRLANTKLALDMSLSS 1033

Query: 197  ALK-KETI 203
              K +E +
Sbjct: 1034 ENKDREML 1041


>gi|156847261|ref|XP_001646515.1| hypothetical protein Kpol_1055p13 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117193|gb|EDO18657.1| hypothetical protein Kpol_1055p13 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1552

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 11/177 (6%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
                 A      LQ   G +        +   +        +I       + +   F + 
Sbjct: 1268 TKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGH----RALIFTQMTKVLDILEQFLNY 1323

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               L         ++      + +N + ++ +      S G G+NL  G + ++F+   W
Sbjct: 1324 HGYLYMRLDGATKIEDRQILTERFNNDPRVTVFILSSRSGGLGINLT-GADTVIFYDSDW 1382

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1383 NPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVIIQ 1434


>gi|296225327|ref|XP_002758442.1| PREDICTED: helicase ARIP4 [Callithrix jacchus]
          Length = 1467

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 840

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 841 -----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893


>gi|301093032|ref|XP_002997365.1| DNA repair and recombination protein RAD26 [Phytophthora infestans
           T30-4]
 gi|262110763|gb|EEY68815.1| DNA repair and recombination protein RAD26 [Phytophthora infestans
           T30-4]
          Length = 1039

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 20/168 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
           + E          K+  LE ++   K      ++       L  +Q       T      
Sbjct: 656 FQEMCAISTKTCGKMIVLEKLLSVWKKRRQRTLIFSRSTRMLDIIQLFLITKATKYSRLD 715

Query: 96  ------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    + ++N  +    +      + G GLNLQ     +V F   W+       
Sbjct: 716 GNTKVEERLQMVNDFNSSESNTTVFLISTRAGGVGLNLQS-ATNVVIFDPSWNPAHDC-- 772

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  R  + G  + V VY LI   TI+E++  R   K  + D  L
Sbjct: 773 ---QAQDRAYRIGQTKDVQVYRLITLGTIEEMIYVRQIYKQQLSDTTL 817


>gi|239611529|gb|EEQ88516.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1148

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    +V   F             L           +
Sbjct: 935  KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 994

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 995  VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1048

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 1049 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 1090


>gi|194745043|ref|XP_001955002.1| GF18554 [Drosophila ananassae]
 gi|190628039|gb|EDV43563.1| GF18554 [Drosophila ananassae]
          Length = 1921

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 75/252 (29%), Gaps = 58/252 (23%)

Query: 1    MKQYHKF----QRELYCDLQGENIEAF---------NSASKTVKCLQLANGAVYYDEEKH 47
            ++ Y  F     ++    L      A          +          + N       +  
Sbjct: 1607 LRLYEDFSNKHLKDCLDKLSDSPASAMVAENLGAKTHIFQALRYLQNVCNHPKLVLRQSE 1666

Query: 48   W----------------KEVHDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLA 82
                                H  K+ AL+ ++            +    ++     + L 
Sbjct: 1667 DLAQVSAQLAQSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLD 1726

Query: 83   RLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             ++                       +    +  +N +  I +L       G GLNL  G
Sbjct: 1727 IVEHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-G 1785

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K 
Sbjct: 1786 ADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKI 1840

Query: 189  TIQDLLLNALKK 200
               + +++A   
Sbjct: 1841 LTANTVVSAENA 1852


>gi|197387226|ref|NP_001127992.1| helicase ARIP4 [Rattus norvegicus]
 gi|149018631|gb|EDL77272.1| Rad54 like 2 (S. cerevisiae) (predicted) [Rattus norvegicus]
          Length = 1299

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 839

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+  ++Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 840 -----CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 892


>gi|327348460|gb|EGE77317.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1179

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +H  K+  L  ++   K N    +V   F             L           +
Sbjct: 966  KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 1025

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1026 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1079

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 1080 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 1121


>gi|303311897|ref|XP_003065960.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105622|gb|EER23815.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1048

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
              KI+ L  I+++       IV   F S L +++                 R   ++  
Sbjct: 797 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLESAGIGYARYDGGMRNGLREAS 856

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  +     +L     +   GLNL    + +V    +W+       +E   + R  + 
Sbjct: 857 LEKLRHSSSTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRL 910

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 911 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 948


>gi|82914943|ref|XP_728905.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485550|gb|EAA20470.1| DOMINO B-related [Plasmodium yoelii yoelii]
          Length = 1732

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 31/211 (14%)

Query: 1    MKQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            ++ Y    +  +L   ++       N+        Q                +   K+ A
Sbjct: 1360 VQNYSHISKIEDLIKKIKKATRVYHNAF-----LKQ-----SIIFPLNKDISLGSGKLFA 1409

Query: 59   LEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
            LE ++   K      ++   F   L  L+                  +++    + ++N 
Sbjct: 1410 LEKLLSKCKKEGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN 1469

Query: 107  GKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             K   +  +   S   G+NL    N+++F+   W+       I++  + R  + G  + V
Sbjct: 1470 DKSYFIFISSTRSGSIGINLTA-ANVVIFYDTDWNPS-----IDKQAMDRCHRIGQTKDV 1523

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+  + + T++E + ++   K  + ++ +N
Sbjct: 1524 HVFRFVCEYTVEENIWKKQLQKRKLDNICIN 1554


>gi|301321598|gb|ADK68988.1| Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
          Length = 735

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------------EEKHW 48
            Y         D     IEA N      K LQ A GAVY D                +  
Sbjct: 504 AYDAV---TLDDASAHYIEAVNGGVLRNKLLQFAAGAVYIDLDKGADGYAKATSLTSRPT 560

Query: 49  KEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----C 99
            ++H  K   +  I ++         +++AY F+ +   L     +   L          
Sbjct: 561 LQLHSAKFDKVIDICDQHFATGGDGSVLIAYRFDFEKTILIDRLRRAGYLGARAYNGMPD 620

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T + WN G+IP++  HPAS GHGLNLQ+GG+ L++ +L    E + Q   R+      + 
Sbjct: 621 TKKAWNRGEIPVMLVHPASAGHGLNLQFGGHTLIWTTLPDSNEHYGQTPARL-----NRL 675

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  + V V+ ++ +NTID  +   L  K   Q+ L+ A + E
Sbjct: 676 GQTKPVVVHTILTENTIDMAMPGALSDKQASQERLMQATRSE 717


>gi|218189165|gb|EEC71592.1| hypothetical protein OsI_03975 [Oryza sativa Indica Group]
          Length = 1270

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  ++          +              ++++N   ++ ++     +
Sbjct: 1117 KAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKA 1176

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 1177 ASLGLNMVAACH-VLLLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1230

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1231 RILALQEKKREMVASAFGEDK 1251


>gi|195339573|ref|XP_002036392.1| GM12170 [Drosophila sechellia]
 gi|194130272|gb|EDW52315.1| GM12170 [Drosophila sechellia]
          Length = 611

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ----- 85
             ++    Y  +          K + L+ ++ K       +++   F   L  ++     
Sbjct: 398 QMMSKHEFYDVKIPDNLICDSGKFRYLDTLLPKLKEEGHRVLLFSQFTMMLDIVEEYLRI 457

Query: 86  -----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        ++     I ++N +  I +      + G G+NL      ++   + +
Sbjct: 458 RKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIH-DIDF 516

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        ++    R  + G +R V +Y LI+++TI+E +L     K  ++  + +  K
Sbjct: 517 NP-----YNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEK 571

Query: 200 KET 202
            E 
Sbjct: 572 GEV 574


>gi|119479961|ref|XP_001260009.1| DNA excision repair protein (Rad26L), putative [Neosartorya
           fischeri NRRL 181]
 gi|119408163|gb|EAW18112.1| DNA excision repair protein (Rad26L), putative [Neosartorya
           fischeri NRRL 181]
          Length = 1077

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              T
Sbjct: 680 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMT 739

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + E+N + K  +      S G GLN+    N +V     W+        +   
Sbjct: 740 YEERTKVVDEFNSDPKQFVFLISTRSGGVGLNITS-ANKVVVVDPNWNPSH-----DLQA 793

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 794 QDRAYRIGQSRNVEVFRLISAGTIEEIVYARQIYKQQQAN 833


>gi|21622371|emb|CAD37001.1| related to DNA repair protein RAD26 [Neurospora crassa]
          Length = 1178

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
           + +     KI    +     +   ++V  H    L  LQ  F              + ++
Sbjct: 576 NPEFCGKWKILRKLLRFWHESGDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGALSYEE 635

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N + +  +      + G GLN+    N +V F   W+        +     R
Sbjct: 636 RQRVVDEFNTDPRQFVFLISTKAGGVGLNITS-ANKVVIFDPHWNPS-----YDLQAQDR 689

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 690 AYRIGQIRDVDVFRLVSAGTIEEIVYARQIYKQQQAN 726


>gi|301767248|ref|XP_002919008.1| PREDICTED: helicase ARIP4-like [Ailuropoda melanoleuca]
          Length = 1465

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 780 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 838

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 839 -----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 891


>gi|281338061|gb|EFB13645.1| hypothetical protein PANDA_007611 [Ailuropoda melanoleuca]
          Length = 1424

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 739 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 797

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 798 -----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 850


>gi|194221261|ref|XP_001495142.2| PREDICTED: RAD54-like 2 (S. cerevisiae) [Equus caballus]
          Length = 1466

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 781 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 839

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 840 -----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 892


>gi|190345413|gb|EDK37294.2| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 37/207 (17%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------VHDEKIKALEVIIE 64
                        ++ N       E   +E                    K+  L  ++ 
Sbjct: 549 SRGGILGLITLFKKICNSPSLLAPEGKVEESELSGSDFGLNVELNNKTSGKLLVLIPLLL 608

Query: 65  KAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN---EGKI 109
           +       +++  ++   L  L+++  +               +    + ++N       
Sbjct: 609 EIQRLGEKVVLVSNYTQTLKLLEQSVNKLNMKSLRLDGTTANKERDKLVNQFNKSSAEST 668

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL  G + L+ F   W+       ++   + R  + G KR VF+Y 
Sbjct: 669 MIFLLSAKAGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMARIHRDGQKRPVFIYR 722

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L+    IDE + QR   K+ + D  L+
Sbjct: 723 LLTTGCIDEKIFQRQLMKNNLSDKFLD 749


>gi|73985395|ref|XP_533811.2| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein isoform 1 [Canis familiaris]
          Length = 1467

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 840

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 841 -----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 893


>gi|73985399|ref|XP_860644.1| PREDICTED: similar to steroid receptor-interacting SNF2 domain
           protein isoform 3 [Canis familiaris]
          Length = 1395

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I ++N+       L      +   G+NL  G N +V F   W+ 
Sbjct: 710 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 768

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 769 -----CHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 821


>gi|296417576|ref|XP_002838429.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634367|emb|CAZ82620.1| unnamed protein product [Tuber melanosporum]
          Length = 1062

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLL 112
              ++A   IV   F S L  ++    Q     +                +  ++  + ++
Sbjct: 901  WISSAKKTIVFSQFTSLLDLIEIPIHQKGWTYRRYDGGMTSTARNEALTEFTDDPSVNII 960

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +   GLNL    + ++    +++       IE   + R  + G +R V V+ LI 
Sbjct: 961  LVSLKAGNSGLNLVA-ASQVIILDPFYNP-----FIENQAIDRAHRIGQQRKVRVHKLIV 1014

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              T+++ VL     K  + +  L+    + I
Sbjct: 1015 AGTVEDRVLALQEEKRKLIEGALDEKASQGI 1045



 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 10/66 (15%)

Query: 4   YHKFQRELYCDLQG----ENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y   Q +             +     N     ++  Q         +     EV D K  
Sbjct: 623 YQALQDKSKILYNKYLRAGTVGRNYSNILVLLLRLRQACCHPHLIRD----IEVADAKKP 678

Query: 58  ALEVII 63
             + +I
Sbjct: 679 FDDQMI 684


>gi|189535029|ref|XP_687332.3| PREDICTED: helicase ARIP4 [Danio rerio]
          Length = 1437

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLL 112
           +  +E  + +            N              +  +    I ++N+    +  + 
Sbjct: 750 LTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLINQFNDPANTQAWVF 809

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NL  G N +V F   W+        +   V R  + G ++   +Y L+ 
Sbjct: 810 LLSTRAGCLGVNL-IGANRVVVFDASWNP-----CHDAQAVCRVYRYGQRKPCHIYRLVC 863

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
             T+++ +  R  +K  + D +++ L 
Sbjct: 864 DFTLEKKIYDRQVSKQGMSDRVVDDLN 890


>gi|94732329|emb|CAK11033.1| novel protein similar to human and mouse steroid
           receptor-interacting SNF2 domain protein (Srisnf2l)
           [Danio rerio]
          Length = 1305

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLL 112
           +  +E  + +            N              +  +    I ++N+    +  + 
Sbjct: 618 LTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLINQFNDPANTQAWVF 677

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NL  G N +V F   W+        +   V R  + G ++   +Y L+ 
Sbjct: 678 LLSTRAGCLGVNL-IGANRVVVFDASWNP-----CHDAQAVCRVYRYGQRKPCHIYRLVC 731

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
             T+++ +  R  +K  + D +++ L 
Sbjct: 732 DFTLEKKIYDRQVSKQGMSDRVVDDLN 758


>gi|242207274|ref|XP_002469491.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731520|gb|EED85364.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1300

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 72/177 (40%), Gaps = 25/177 (14%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ 90
            LQ+A        +    +    K++ L  ++ +       I++       L  L+     
Sbjct: 1081 LQIA------FPDPSLLQYDCGKLQELARLLRERKAGGHRILIFTQMTKILDILEIFLNL 1134

Query: 91   G----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         ++      + +N + +I    +   S G G+NL  G + ++F+   +
Sbjct: 1135 HGYLYLRLDGATKIEDRQYITERFNSDSRIFCFISSSRSGGVGINLT-GADTVIFYDSDF 1193

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + +     ++R    R  + G  R V +Y  I+++T++E +L++   K ++ ++++ 
Sbjct: 1194 NPQ-----MDRQCEDRAHRIGQIRDVHIYRFISEHTVEEALLRKANQKRSLDNIVIQ 1245


>gi|213408777|ref|XP_002175159.1| chromodomain helicase hrp1 [Schizosaccharomyces japonicus yFS275]
 gi|212003206|gb|EEB08866.1| chromodomain helicase hrp1 [Schizosaccharomyces japonicus yFS275]
          Length = 1354

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 78/226 (34%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           + Y       Y  L G      +    +  V+  + +N    +   +    +        
Sbjct: 579 QLYKNILTRNYRALSGAAAGNAHVSLLNIVVELKKASNHPYLFPGVQEKWMIGRKNTRED 638

Query: 52  -------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----- 97
                  +  K+  L+ +++  K +   +++       L  L +         +      
Sbjct: 639 KLRGIVMNSGKMVLLDKLLQRLKQDGHRVLIFTQMVKVLNILAEYMNLRGYNFQRLDGTI 698

Query: 98  -----PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I  +N    P  +      + G G+NL    + ++ F   W+ +      + 
Sbjct: 699 PAPVRRLAIDHFNSPDSPDFVFLLSTRAGGLGINL-STADTVIIFDSDWNPQA-----DL 752

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G K  V VY  ++++T++E +L+R R K  ++  +++
Sbjct: 753 QAMARAHRIGQKNHVSVYRFLSKDTVEEDILERARRKMILEYAIIS 798


>gi|171694309|ref|XP_001912079.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947103|emb|CAP73908.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1203

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 17/157 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
           + +     K+    +    +N   ++V  H    L  L+  F              + ++
Sbjct: 734 NPEFCGKWKVLKKLLQFWHSNGDKVLVFSHSVRLLRILRHLFNNTNYNVSFLDGSLSYEE 793

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N +    +      + G GLN+    N +V F   W+        +     R
Sbjct: 794 RQNVVDEFNTDPAQFVFLISTKAGGVGLNITS-ANKVVIFDPHWNPA-----YDLQAQDR 847

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 848 AYRIGQIRDVDVFRLISAGTIEEIVYARQIYKQQQAN 884


>gi|300708513|ref|XP_002996434.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
 gi|239605736|gb|EEQ82763.1| hypothetical protein NCER_100481 [Nosema ceranae BRL01]
          Length = 858

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 65/157 (41%), Gaps = 18/157 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           +   K+  L+ ++ K       +++ +     +  ++    +             +    
Sbjct: 698 IDSGKLACLDKLLTKLKQENHRVLIYFQMTKMMDLVEDYCVKKEFTYCRLDGSSKVSYRR 757

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            T+ +W  G   +      + G G+NL    + ++F+   W+       +++  + R  +
Sbjct: 758 DTVNDWQTGDKFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----VDQQAMDRAYR 811

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY LI +NTI+E V+++   K  +Q +++
Sbjct: 812 IGQTKDVTVYRLITKNTIEERVIEKATHKGNLQKMVI 848


>gi|224125738|ref|XP_002319663.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222858039|gb|EEE95586.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1404

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 73/207 (35%), Gaps = 24/207 (11%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            +L  +   + ++        +  L      V   +      V  + I  L++I    +  
Sbjct: 1008 DLLLENNYKEVDYSGKMVLLLDIL------VMSSDVGDKTLVFTQSIPTLDLIELYLSRL 1061

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEG---KIPLLFAHPASCGHGLNL 125
            P +                  GRT   +    ++ +N+    ++        +   G+NL
Sbjct: 1062 PRLGKKG-KFWRKGKDWYRLDGRTESSERQRLVERFNDPKNKRVKCTLISTRAGSLGINL 1120

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             Y  N +V     W+        +   + R  + G  + VF Y L+A  T++E + +R  
Sbjct: 1121 -YAANRVVIVDGSWNPT-----YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1174

Query: 186  TKSTIQDLLLNAL-------KKETIHV 205
            TK  +   +++         ++E +H+
Sbjct: 1175 TKEGLAARVVDRQQVYRTISREEMLHL 1201


>gi|238496023|ref|XP_002379247.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus flavus NRRL3357]
 gi|220694127|gb|EED50471.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus flavus NRRL3357]
          Length = 917

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 70/213 (32%), Gaps = 33/213 (15%)

Query: 15  LQGENIEAFNSAS-KTVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA 66
           L+    + +   S   ++  + +              E       +  K   L  +++  
Sbjct: 478 LEYSEKKKYRILSNILMELRKCSIHPYLLDDAIPDPYELGAHVITNSGKYIVLLKMVQHF 537

Query: 67  ---NAAPIIVAYHFNS----------------DLARLQKAFPQGRTLDKDPCTIQEWNEG 107
                  II+  +FN                 D  R  +         ++       N+ 
Sbjct: 538 VLERGRKIIIFSNFNQALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDP 597

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +      + G GLNL    + ++F    W+ +     + R    R  + G K  V +
Sbjct: 598 RYMVFLISIRAGGEGLNLVS-SSTVIFLDEDWNPQ-----VMRQAEARVHRIGQKHPVRI 651

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + L ++ T++E + +R+  K+ +   ++  +  
Sbjct: 652 FKLQSKGTVEEQISRRIVKKAYVATKIMEDINA 684


>gi|73998070|ref|XP_859242.1| PREDICTED: similar to helicase, lymphoid-specific isoform 3 [Canis
           familiaris]
          Length = 386

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
           +  K   L+ ++ +       +++       L  L                  +  +   
Sbjct: 232 NSGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREK 291

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N +  + +      + G G+NL    + ++ +   W+ +      +     R  +
Sbjct: 292 NMHSFNTDPDVFIFLVSTRAGGLGINLTA-ADTVIIYDSDWNPQS-----DLQAQDRCHR 345

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G  + V VY L+  NTID+ +++R   K  ++ L+++  K
Sbjct: 346 IGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKSK 386


>gi|307183105|gb|EFN70022.1| TATA-binding protein-associated factor 172 [Camponotus floridanus]
          Length = 1883

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +    +  +N +  I +L       G GLNL  G + ++F  
Sbjct: 1690 THLPTVTYLRLDGSVPAAQRHSVVARFNADPSIDVLLLTTQVGGLGLNLT-GADTVIFVE 1748

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G K+ V VY LI ++T++E ++   + K    + +++
Sbjct: 1749 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLTANTIIS 1803


>gi|67967643|dbj|BAE00304.1| unnamed protein product [Macaca fascicularis]
          Length = 644

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 56/248 (22%)

Query: 1   MKQYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------- 50
           ++ Y K          LQG    + +         +L N           KE        
Sbjct: 292 IELYRKLLNSQVVRFCLQGLLENSPH-LICIGALKKLCNHPCLLFNSIKEKECSTCDKNE 350

Query: 51  -----------------------VHDEKIKALEVIIEKANA----APIIVAYHFNSDLA- 82
                                      K++ L  ++   +       +++  ++   L  
Sbjct: 351 EKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNV 410

Query: 83  RLQKAFPQGRTLDK---------DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNI 131
             +     G    +             +  +N     +        + G GLNL  GG+ 
Sbjct: 411 LQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSVFIFLLSSKAGGVGLNL-IGGSH 469

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+ + + W+        +   ++R  + G K  V +Y L+   TI+E + QR  +K  + 
Sbjct: 470 LILYDIDWNPAT-----DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLC 524

Query: 192 DLLLNALK 199
             +++  K
Sbjct: 525 GAVVDLTK 532


>gi|328869121|gb|EGG17499.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1301

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 42/224 (18%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------------------- 52
             +++    +  +  +      ++A+      EE                           
Sbjct: 789  AEVKNALNKTSSPLAALTVLKKIADHPALIHEEMKTCNTPEMLDIMKQIGENQTIKSLVR 848

Query: 53   -DEKIKALEVIIE--KANAAPIIVAYHFNSDLA------------RLQKAFPQGRTLDKD 97
               K++ L  ++   K     I++       L              L+       T ++ 
Sbjct: 849  NSGKMQFLYYLLPNLKQEGHRILIFSQSVKMLNAIQLLLDTLNLSYLRIDGSITSTKERQ 908

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                +  N+               GLNL    + ++ F   W        ++   V R  
Sbjct: 909  KRIDEYNNDSSYFCFLLTIQVGALGLNLTS-ADRVLIFDPSWT------TVDNQAVDRVY 961

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G KR V VY LI   TI+E + ++   K ++   +LN  K +
Sbjct: 962  RIGQKRDVVVYRLITCGTIEEKIYRKQVFKGSLMKSMLNQDKGQ 1005


>gi|320039914|gb|EFW21848.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1048

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
              KI+ L  I+++       IV   F S L +++                 R   ++  
Sbjct: 797 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLESAGIGYARYDGGMRNGLREAS 856

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  +     +L     +   GLNL    + +V    +W+       +E   + R  + 
Sbjct: 857 LEKLRHSSSTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRL 910

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 911 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 948


>gi|255725568|ref|XP_002547713.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135604|gb|EER35158.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 847

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 28/198 (14%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-----------ALEVIIEKANAA 69
              +S +      ++ N      ++  +K + +EK                ++   A   
Sbjct: 509 SGSDSFTLINLFKKICNSPSLLIDDAFFKRIVEEKFHLTLSSGKINVLIPLLLEIVAQKE 568

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
            I++  ++   L  L+K   +                    ++++N    I +      S
Sbjct: 569 KIVLISNYTQTLDLLEKVLSKINLTFSRLDGSTATNIRSKIVKQFNSNPNIHVFLLSSKS 628

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y +     IDE
Sbjct: 629 GGMGINL-VGASRLILFDNDWNPATDLQSMSRI-----HRDGQTKPCFIYRIFTTGCIDE 682

Query: 179 LVLQRLRTKSTIQDLLLN 196
            + QR   K+ +    L+
Sbjct: 683 KIFQRQLVKNRLSSKFLD 700


>gi|88811008|ref|ZP_01126264.1| helicase, Snf2 family protein [Nitrococcus mobilis Nb-231]
 gi|88791547|gb|EAR22658.1| helicase, Snf2 family protein [Nitrococcus mobilis Nb-231]
          Length = 572

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 18/183 (9%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
             + + C+++     Y  +++       E++  +         + I+V   +   L  ++
Sbjct: 128 LQQQLACMRMLCDTPYILDQECRVSPKLEELGRILDEQLAEPESKIVVFSEWTRRLELVR 187

Query: 86  KAFPQG-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +                    +     +   +     L     +   GLNLQ   N+++ 
Sbjct: 188 EHVETAAFGYALHTGKVPQERRRQEINRFKQDPACR-LLLSSDAGATGLNLQA-ANVVIN 245

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W     +  I R       +   +R V V  L+ +++I+  +L  L  K ++ + +
Sbjct: 246 LDLPWSPARLEPRIAR-----AWRKHQRRHVSVINLVCEDSIEHRILHLLEQKRSLAEGV 300

Query: 195 LNA 197
           L  
Sbjct: 301 LEG 303


>gi|328709714|ref|XP_001947872.2| PREDICTED: ATP-dependent helicase brm-like [Acyrthosiphon pisum]
          Length = 1638

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 1058 LYKHMQSKGVLLTDGAEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQSIEEKYCEHIGTA 1117

Query: 53   ------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K       +++       +  ++             
Sbjct: 1118 GNVVQGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLGWRGFAYLRL 1177

Query: 91   --GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +     ++++N    +  L      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1178 DGTTKAEDRGDLLKKFNSAGSEYFLFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1233

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1234 --DLQAQDRAHRIGQQNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1282


>gi|242058897|ref|XP_002458594.1| hypothetical protein SORBIDRAFT_03g036380 [Sorghum bicolor]
 gi|241930569|gb|EES03714.1| hypothetical protein SORBIDRAFT_03g036380 [Sorghum bicolor]
          Length = 1255

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI--KALEVIIEKANAAPIIVAYHFNSDLA 82
            +    +   ++        + K    +  EK   +     I+       IV   +   L 
Sbjct: 1057 ALDILLSLPRI--DPTQMTDSKCSIGLESEKFDGRGTSEQIDTKLTEKAIVFSQWTRMLD 1114

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNI 131
             L+          +              ++++N   ++ ++     +   GLN+    + 
Sbjct: 1115 LLEVHLKASHVTYRRLDGTMSVAARDKAVKDFNTVPEVTVMIMSLKAASLGLNMVAACH- 1173

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++   LWW+        E   V R  + G  R V V  L  ++T+++ +L     K  + 
Sbjct: 1174 VLMLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKREMV 1228

Query: 192  DLLLNALK 199
                   K
Sbjct: 1229 ASAFGEDK 1236


>gi|222619356|gb|EEE55488.1| hypothetical protein OsJ_03673 [Oryza sativa Japonica Group]
          Length = 1270

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  ++          +              ++++N   ++ ++     +
Sbjct: 1117 KAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKA 1176

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 1177 ASLGLNMVAACH-VLLLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1230

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1231 RILALQEKKREMVASAFGEDK 1251


>gi|297802844|ref|XP_002869306.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315142|gb|EFH45565.1| hypothetical protein ARALYDRAFT_328538 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 71/222 (31%), Gaps = 32/222 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------- 54
           + Y       Y  L  +     +  +  +   ++ +      + +   E  +E       
Sbjct: 466 EVYKAVITNNYQVLTKKRGAKIS--NVLMDLRKVCSHPYLLKDVEPRLEDANEAFTKLLE 523

Query: 55  -----KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
                ++    ++  K     +++   F   L   Q                    +   
Sbjct: 524 ASGKLQLLDKMMVKLKEQGHRVLIYSQFQHTLDLFQDYCSFKSWKYERIDGKVGGAERQA 583

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
           +I  +N              + G G+NL    + ++ +   W+        +   + R  
Sbjct: 584 SIDRFNAENSNRFCFLLTTRAGGIGINL-ATADTVIIYDSDWNP-----HADLQAMARAH 637

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G    V +Y LI + T++E +++  + K  ++ L++  ++
Sbjct: 638 RLGQTNKVMIYRLIHRATVEERMVEITKKKMLLEHLVVGNME 679


>gi|325096446|gb|EGC49756.1| RING-13 protein [Ajellomyces capsulatus H88]
          Length = 1188

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               +R+    L+     +  +  + ++ L                 V   KI+    I+ 
Sbjct: 971  KAVERKSLPQLKKNAARSAEAKREYMRYL-------------TDNWVTSAKIEKTMEILR 1017

Query: 65   KANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW 104
               +            IV   F S L               +     +   ++   ++  
Sbjct: 1018 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1077

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1078 DSQNHTIMLISLKAGNSGLNLVA-ASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1131

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V V+ ++   T+++ +L+    K  + +  L+    ++I
Sbjct: 1132 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSI 1170



 Score = 41.7 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L    I     N     ++  Q        D+          KI
Sbjct: 786 LYEGLESKTQIRFNRYLDEGTIGRNYSNILVLLLRLRQACCHPHLIDDLGVEANAATAKI 845

Query: 57  KALEV 61
             +E 
Sbjct: 846 DLIEN 850


>gi|119193650|ref|XP_001247431.1| hypothetical protein CIMG_01202 [Coccidioides immitis RS]
          Length = 1034

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 52  HDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPC 99
              KI+ L  I+++       IV   F S L +++                 R   ++  
Sbjct: 783 SSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLKSAGIGYARYDGGMRNDLREAS 842

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  +     +L     +   GLNL    + +V    +W+       +E   + R  + 
Sbjct: 843 LEKLRHSSSTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHRL 896

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V VY +  ++T++E +L     K  +    +  
Sbjct: 897 NQTVDVKVYKMTIKDTVEERILDLQERKRELASATIEG 934


>gi|324503939|gb|ADY41699.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 914

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDE 54
           K Y             +     +  +   +  + A     +D                  
Sbjct: 264 KNYRFLSAAGCAQGDHQGGSRNSLVNIMTQLRKCALHPYLFDGMEPEPFKEGEHLATSSG 323

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQ 102
           K+  LE I+   + +   +++       L  +Q  F   R   +              I 
Sbjct: 324 KMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKLKADMRFTAID 383

Query: 103 EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +    +        + G GL L  G + ++F    ++ +      +     R  + G
Sbjct: 384 NFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQN-----DIQAAARCHRIG 437

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V +  L+ +NT++E++      K  + + ++ +
Sbjct: 438 QTKHVKIIRLVTKNTVEEVIECYATRKLRMTNRVMES 474


>gi|154284692|ref|XP_001543141.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406782|gb|EDN02323.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 214

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           +K +  I++      ++ +  F                  K    + ++N +    +L  
Sbjct: 1   MKEMLDIVQNDVLKKLLPSVQFLR--------LDGSVEATKRQSIVNQFNTDPSYDVLLL 52

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             +  G GLNL  G + ++F    W+ ++     +   + R  + G K+ V VY LI + 
Sbjct: 53  TTSVGGLGLNLT-GADTVIFVEHDWNPQK-----DIQAMDRAHRIGQKKVVNVYRLITRG 106

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           T++E +L   R K  +   ++N
Sbjct: 107 TLEEKILNLQRFKIDVASTVVN 128


>gi|219120207|ref|XP_002180847.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407563|gb|EEC47499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 495

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 41/229 (17%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           + Y     +    L     + ++  +  +  ++  +  N        +            
Sbjct: 273 QYYRALYEKNVKFLHKNNKKALDGPSLNNLAMQLRKCCNHVFLLKGVEEEFRNKGSLTLS 332

Query: 53  --------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
                     K+  L+ ++   K+    ++V   F   L  L+  F              
Sbjct: 333 EADFLVQGSGKLILLDKLLPRLKSEGHRVLVFSQFKIMLDILEDYFSMREMKFERIDGSI 392

Query: 93  TLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           T  +    I  +   +I       ++     + G G+NL    +  + F   W+ +    
Sbjct: 393 TGKRRQQAIDRFQAPEIDGRKPPFIMMLSTRAGGVGINLTA-ADTCIIFDSDWNPQN--- 448

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +     R  + G  + V VY L+ + T +  +      K  +   +L
Sbjct: 449 --DLQAQARCHRIGQTKEVKVYRLLTRKTYEMQMFHMSSMKMGLDQAVL 495


>gi|115440307|ref|NP_001044433.1| Os01g0779400 [Oryza sativa Japonica Group]
 gi|53792212|dbj|BAD52845.1| putative ATPase [Oryza sativa Japonica Group]
 gi|113533964|dbj|BAF06347.1| Os01g0779400 [Oryza sativa Japonica Group]
 gi|215701396|dbj|BAG92820.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1213

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  ++          +              ++++N   ++ ++     +
Sbjct: 1060 KAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKA 1119

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 1120 ASLGLNMVAACH-VLLLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1173

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1174 RILALQEKKREMVASAFGEDK 1194


>gi|322707430|gb|EFY99008.1| DNA repair and recombination protein RAD5B [Metarhizium anisopliae
           ARSEF 23]
          Length = 769

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
             K +A+  I++   K + + +++   + S L  +Q                  T  +D 
Sbjct: 596 SSKTEAMMQILQATLKKDGSKVVIFSQWTSFLNIIQNQLDIAGIKYSRIDGSMNTEKRDR 655

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+ +  ++ A  A C  GLNL    + ++    WW        IE   + R  +
Sbjct: 656 AVRALDNDAETRVMLASLAVCSVGLNLVS-ADTVILSDSWWAPA-----IEDQAIDRVHR 709

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            G  R   V+ LI + T++E VL   + K  +        +++  H
Sbjct: 710 LGQTRKTTVWRLIVEGTVEERVLDVQKEKRDLVTKAFQEKERKGKH 755


>gi|328768005|gb|EGF78053.1| hypothetical protein BATDEDRAFT_20594 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 729

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 21/177 (11%)

Query: 33  LQLANGAVYYDEEK--HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF 88
            QL          K      +   K+  L+ ++ +       I+V   F   L  L+   
Sbjct: 497 HQLCLKYKTLMPHKLSDKVIMDSCKLVKLKSMLLEMRAQGDKILVFSQFVIMLDILEPVM 556

Query: 89  PQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +     +  N+ +I +      S G G+NL    N+++ + +
Sbjct: 557 EHLGIKYLRLDGTTPVGIRQSMMDEFNNDPEITVFLLTTKSGGVGINLTS-ANVVIMYDI 615

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            ++        +     R  + G  RAV V+ LI  N+I++ +L+    K  +   L
Sbjct: 616 DYNP-----HNDAQAEDRAHRVGQTRAVTVHRLIMDNSIEQHILRLAEHKLELDAKL 667


>gi|156086958|ref|XP_001610886.1| DNA repair and recombination protein RAD54-like  [Babesia bovis
           T2Bo]
 gi|154798139|gb|EDO07318.1| DNA repair and recombination protein RAD54-like , putative [Babesia
           bovis]
          Length = 824

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 46/228 (20%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------- 52
           +    +    S    +  +++ N           K                         
Sbjct: 418 INSGEVVMTKSLGVILSLMKVCNHPGLIKPSPSKKPTKADELIKEIHANYNTLQKNRSCY 477

Query: 53  ---DEKIKALEVIIEKANA---APIIVAYHFNSDLARLQKAFPQGRTL----------DK 96
                K   L  ++          I++  ++   L   ++   Q               K
Sbjct: 478 PELSAKTLVLFRLLHNIRRTTSDRIVIISNYTQTLDVFERMCKQCNYPCVRLDGTLSIKK 537

Query: 97  DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+             + G G+NL  G N LV F   W+        ++  + 
Sbjct: 538 RHKLVTTFNDPNSHSFAFLLSSKAGGCGINL-IGANRLVLFDPDWNPAN-----DKQALA 591

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G ++  ++Y   +  TI+E + QR   K  +  +L+   + E 
Sbjct: 592 RVWRDGQRKTCYIYRFFSTGTIEEKIYQRQICKDGLSAMLVTDGENEI 639


>gi|325117702|emb|CBZ53253.1| putative SNF2 family helicase [Neospora caninum Liverpool]
          Length = 1545

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDK 96
            +   KI+ +  I+ +        ++   + + L  +++                   ++ 
Sbjct: 1361 MDSAKIRKMIEIVSEIKKKGEKALIFSQYTTYLDVVEECLTTFCGDIGKCRLDGSTAVED 1420

Query: 97   DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + E+    ++ L      + G GLNL      ++     W+ +      +R    R
Sbjct: 1421 RQALVDEFSTNPELTLFLLSTKAGGQGLNLTA-ARTVILMDQDWNPQN-----DRQAEDR 1474

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              + G  + V +Y L  + T++E +L+  + K  + 
Sbjct: 1475 VHRLGQTQDVTIYRLCCRGTVEESILKCCQAKLDLD 1510


>gi|323453075|gb|EGB08947.1| hypothetical protein AURANDRAFT_53418 [Aureococcus anophagefferens]
          Length = 738

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 45/233 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS--------KTVKCLQLANGAVYYDEEKHWKEVH- 52
           K Y     E    L+   I A   A+          +   + AN    + E +       
Sbjct: 425 KSYEALILER--KLKDSLIAAGIPATSHEVSEQNMLMNQRKNANHPFLFGEPRDANGEFI 482

Query: 53  -----------DEKIKALEVIIEK--ANAAPIIVAYHFNS------DLARLQKAFPQ--- 90
                        K + LE I+ K  A    +++            D  R ++       
Sbjct: 483 GVATPKALVNAAGKFRLLERILPKLKAQGHKVLLFSQMTELLNIIEDYLRWREWNYFRID 542

Query: 91  -GRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            G  L +    I  +N       +  +      + G G+NL    + ++ F   W+  + 
Sbjct: 543 GGVELSERQRQIDAFNGEGQESNEYFVFMLSTRAGGLGINL-ATADTVILFDSDWNPHQ- 600

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +   + R  + G KR V VY  +   + +  ++++  +K  ++ + +  
Sbjct: 601 ----DAQAMDRAHRIGQKRDVVVYRFLTSGSAEIGMMEKQISKKKLERMAVQG 649


>gi|302791607|ref|XP_002977570.1| hypothetical protein SELMODRAFT_106921 [Selaginella moellendorffii]
 gi|300154940|gb|EFJ21574.1| hypothetical protein SELMODRAFT_106921 [Selaginella moellendorffii]
          Length = 492

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 36/228 (15%)

Query: 4   YHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKH-------------W 48
           Y         DL          N  +  ++  +L N     D  +               
Sbjct: 221 YRALYENRISDLIKGTQPSNMPNLRNMAMELRKLCNHPFLCDGLEEDFASKHANASSVSN 280

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L  ++     +   +++   F   L  L+          +          
Sbjct: 281 LVQSSGKMVLLNKLLPMLRDSNRRVLIFSQFTIMLDILEDYLSSEGYTFERIDGKIRGSE 340

Query: 98  --PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +  N+ K         + G G+ L    +  + +   W+ +      +   +
Sbjct: 341 RQQAAIDRYSANDCKTFAFLLSTRAGGLGITLTA-ADTCIIYDSDWNPQN-----DLQAM 394

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V +Y LI +NT ++ + +    K  + + +L    ++
Sbjct: 395 ARCHRIGQTKDVRIYRLITRNTYEQHLFECSSRKYGLDEAVLGRFAED 442


>gi|302783170|ref|XP_002973358.1| hypothetical protein SELMODRAFT_50459 [Selaginella moellendorffii]
 gi|300159111|gb|EFJ25732.1| hypothetical protein SELMODRAFT_50459 [Selaginella moellendorffii]
          Length = 710

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 61/240 (25%), Gaps = 55/240 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y  F R              ++ +      ++ +  +                     
Sbjct: 278 QMYTAFLRSETAQGSLAGSAKGSALAALTILKKICDHPLLLTKRATDDVVEGLEYLDSTD 337

Query: 43  ----------------DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL 84
                            E       H  KI  L  ++E         +V       L  +
Sbjct: 338 IAAAEAMRKSLAGLAEPEPDSDGNKHSCKIVFLMALLENLVQEGHRTLVFAQTLKMLDII 397

Query: 85  Q----------KAFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNIL 132
           Q                    +    ++++      +          G GL L    + +
Sbjct: 398 QEEITKRRYSFCRIDGKTKGSERQRIVEDFQTDGCTVSIFLLTSQVGGLGLTLTA-ADRV 456

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V     W+  +  Q ++R       + G  R V VY L+   T++E + ++   K  +  
Sbjct: 457 VIVDPAWNPSKDNQSVDR-----AYRIGQLRDVIVYRLMTSGTLEEKIYRKQVFKGGLMK 511


>gi|42766595|gb|AAS45429.1| prophage-encoded helicase [Selenomonas ruminantium]
          Length = 126

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           Y F  +  R+++              I +WN GKIP+   HPAS GHGLNLQ GG+IL++
Sbjct: 1   YWFKHEAERIRERLKVREIQTSRD--IADWNAGKIPVALIHPASAGHGLNLQEGGSILIW 58

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           FSL W LE +QQ   R+      + G K  V + ++  + TID  V++ L  K   Q  L
Sbjct: 59  FSLTWSLELYQQTNARL-----YRQGQKDTVSIIHITTEGTIDGDVMKALERKDKTQTAL 113

Query: 195 LNALKK 200
           + A+K 
Sbjct: 114 IEAVKA 119


>gi|254565555|ref|XP_002489888.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|238029684|emb|CAY67607.1| Protein whose overexpression affects chromosome stability,
           potential Cdc28p substrate [Pichia pastoris GS115]
 gi|328350301|emb|CCA36701.1| putative SNF2 family helicase/ATPase [Pichia pastoris CBS 7435]
          Length = 1009

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA-----------FP 89
             +E+   +    +K+K L   I       +++   F   L  ++               
Sbjct: 813 KLEEKSFMQSGKVQKLKELLDKIIFEREEKVLIFSLFTQVLDIIEVVLSVLKIKFLRLDG 872

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           Q     +     + + +  IP+      + G G+NL    N ++ F   ++  +     +
Sbjct: 873 QTSVDIRQDIIDKFYEDETIPVFLLSTKAGGFGINL-VCANNVIIFDQSFNPHD-----D 926

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +    R  + G  + V VY ++ +NTIDE +LQ    K  +   + + 
Sbjct: 927 KQAEDRAHRVGQTKEVNVYRMVTKNTIDESILQLALNKLQLDSTVSDD 974


>gi|296826202|ref|XP_002850936.1| SHREC complex subunit Mit1 [Arthroderma otae CBS 113480]
 gi|238838490|gb|EEQ28152.1| SHREC complex subunit Mit1 [Arthroderma otae CBS 113480]
          Length = 1445

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 65/206 (31%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 870  KQSERHNLNNILMQLRKCLCHPFIYSKAIEDRGVNSTLLHRNMVEASSKLQLLELLLPKL 929

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                    +    I  +N         
Sbjct: 930  QERGHRVLIFSQFLDFLDIVEDFLDGLSLEHLRLDGRMNSLQKQKNIDAFNAPDSEYFAF 989

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + +V     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 990  LLSTRAGGVGINL-ATADTVVILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 1043

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 1044 RGSAEEKIMQIGKKKMALDHVLIERM 1069


>gi|168022943|ref|XP_001763998.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162684737|gb|EDQ71137.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 719

 Score = 86.0 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 28/209 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK-----------EVHDEKIKA 58
           E + +     +      S  ++  +  N    +                  +    K+  
Sbjct: 412 EYFAEKGNRAMLKAQLNSVCMQLRKNCNHPDLFHSHFEDDINYPPVDELVAQCAKFKLMD 471

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK 108
             ++  +     +++       L  L+               G         I+ +NE K
Sbjct: 472 RLLVKLRERGHKVLIFSQMTKILDLLEYYLEERGHNPCRIDGGVQQSVRQEQIRSFNEEK 531

Query: 109 IP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL    + ++ +   W+       ++   + R  + G  R V V
Sbjct: 532 SRFVFLLSTRAGGLGINLTA-ADTVILYDSDWNP-----HMDMQAMDRCHRIGQTRPVHV 585

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y L    +++  +L+    K  ++ L++ 
Sbjct: 586 YRLATAKSVECHMLKVATGKLKLEHLVIE 614


>gi|53792213|dbj|BAD52846.1| putative ATPase [Oryza sativa Japonica Group]
          Length = 1228

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  ++          +              ++++N   ++ ++     +
Sbjct: 1075 KAIVFSQWTRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKA 1134

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 1135 ASLGLNMVAACH-VLLLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1188

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1189 RILALQEKKREMVASAFGEDK 1209


>gi|116179964|ref|XP_001219831.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
 gi|88184907|gb|EAQ92375.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
          Length = 1793

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 31/221 (14%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DE 54
            +  R ++   + +  E  + ++  ++  +       Y +    +                
Sbjct: 1098 ELIRSVFVQGKMKAHERGSLSNILMQLRKCLCHPFIYSQAIEDRTTSAELTRRNLVEASS 1157

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
            K+  LE+++ K       +++   F   L  L+          +              I 
Sbjct: 1158 KLMLLEIMLPKLKERGHRVLLFSQFLDQLTVLEDFLAGLGLRHERLDGSQSSMEKQSKID 1217

Query: 103  EWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N     I ++     + G G+NL    + ++     W+  +     +   ++R  + G
Sbjct: 1218 AFNAPDSDIFVMLLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DIQALSRAHRIG 1271

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             ++ V  + L+  ++ +E +LQ  R K  +  LL+  +  E
Sbjct: 1272 QRKKVLCFQLMTVDSAEEKILQIGRKKLALDHLLIETMDNE 1312


>gi|66811390|ref|XP_639875.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60466825|gb|EAL64871.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 989

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 61/236 (25%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVY-------------------------------YDE 44
            G +  +  S S      +L N                                   Y E
Sbjct: 561 GGGSRGSATSLSTITLLKKLCNSPSLLLLNNKQDEGGEQQQTEIQNILKKHNYTLENYQE 620

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
            +  ++    K+  +E +I++       +++  +F   L   ++   +            
Sbjct: 621 IQEQQDNESGKLLFVESLIKQLKPMNEKLVLVSNFTKTLDVFERLCKRLSIDTLRLDGDV 680

Query: 93  TLDKDPCTIQEWNEG------------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             D     + ++N              +  +      + G G+NL  GGN LV +   W+
Sbjct: 681 KADSRQALVDKFNSSTQNVSSSKSSSSQYQVFLLSAKAGGVGINL-IGGNHLVLYDPDWN 739

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  I+   + R  + G  + VF+Y L +  TI+E + QR   K +I + +++
Sbjct: 740 PA-----IDIQAMERIWREGQTKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVD 790


>gi|328856433|gb|EGG05554.1| hypothetical protein MELLADRAFT_87820 [Melampsora larici-populina
           98AG31]
          Length = 593

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 42/220 (19%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------------HDEKIKALE------ 60
           E+           +L N A     E   + +              +D K+          
Sbjct: 219 ESSQQLVLINTLKKLCNSAGLLINETSIQNLAKNASTLFPAWVTRNDIKLSGKMIALASF 278

Query: 61  -VIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKI 109
             I+       II+  +F S L  ++                    K    +Q +N    
Sbjct: 279 LKILHAKTDEKIILVSNFTSTLDVIEAHCRSQNYSLCRLDGKTPQTKRDDIVQTFNRMTA 338

Query: 110 P---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      S G GLNL  G + L+ F   W+        +   + R  + G K+A  
Sbjct: 339 RSQFVFLLSSKSGGVGLNL-IGASRLILFDSDWNPAT-----DLQAMARIWRQGQKKACH 392

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKETIH 204
           +Y  +A  TIDE + QR  TK+ +   L+    + +E + 
Sbjct: 393 IYRFLATGTIDECIFQRQVTKTGLATDLIKDAGVSREVLD 432


>gi|6320541|ref|NP_010621.1| Swr1p [Saccharomyces cerevisiae S288c]
 gi|6136666|sp|Q05471|SWR1_YEAST RecName: Full=Helicase SWR1; AltName: Full=Swi2/Snf2-related 1
 gi|1230661|gb|AAB64770.1| Ydr334wp [Saccharomyces cerevisiae]
 gi|151942310|gb|EDN60666.1| SWR1 complex component [Saccharomyces cerevisiae YJM789]
 gi|285811352|tpg|DAA12176.1| TPA: Swr1p [Saccharomyces cerevisiae S288c]
          Length = 1514

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             N    +    QL         +K   +    K++ L +++++   N    ++       
Sbjct: 1215 QNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKV 1274

Query: 81   LA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            L    Q     G    +              + +N + +I +      S G G+NL  G 
Sbjct: 1275 LDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GA 1333

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F+   W+       +++    R  + G  R V +Y  ++++TI+  +L++   K  
Sbjct: 1334 DTVIFYDSDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQ 1388

Query: 190  IQDLLLNA 197
            + ++++  
Sbjct: 1389 LDNVVIQE 1396


>gi|190404725|gb|EDV07992.1| helicase SWR1 [Saccharomyces cerevisiae RM11-1a]
          Length = 1514

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             N    +    QL         +K   +    K++ L +++++   N    ++       
Sbjct: 1215 QNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKV 1274

Query: 81   LA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            L    Q     G    +              + +N + +I +      S G G+NL  G 
Sbjct: 1275 LDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GA 1333

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F+   W+       +++    R  + G  R V +Y  ++++TI+  +L++   K  
Sbjct: 1334 DTVIFYDSDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQ 1388

Query: 190  IQDLLLNA 197
            + ++++  
Sbjct: 1389 LDNVVIQE 1396


>gi|50288685|ref|XP_446772.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526080|emb|CAG59699.1| unnamed protein product [Candida glabrata]
          Length = 1408

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 52   HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQK------------AFPQGRTLD 95
               K+     +I K    +++  II+   F + L  L+                      
Sbjct: 1230 PSTKMNQCMDVINKVFEKSDSEKIIIFSQFTTFLDLLEHILATRLKISCLKYTGDMNAKV 1289

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     + ++E    +L     +   GL L    N +V    +W+       +E     R
Sbjct: 1290 RSEIISRFYSEEDKRVLLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDR 1343

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              +    R V V+ L  +N++++ +L+  + K  + D  ++A K + I+
Sbjct: 1344 CYRISQTREVTVHRLFIKNSVEDRILELQKLKRDMVDAAMDAKKIKDIN 1392



 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 4/47 (8%), Positives = 14/47 (29%), Gaps = 5/47 (10%)

Query: 1    MKQYHKFQ---RELYCDLQGENI--EAFNSASKTVKCLQLANGAVYY 42
            ++ Y   +   ++L   L    +     +  +  ++  Q        
Sbjct: 1024 LEFYKALEHKNKQLAKKLLESKVQGNYSSVLTLLLRLRQACCHPELV 1070


>gi|148230804|ref|NP_001085120.1| RAD54 homolog B [Xenopus laevis]
 gi|47939775|gb|AAH72215.1| MGC81308 protein [Xenopus laevis]
          Length = 895

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 73/245 (29%), Gaps = 54/245 (22%)

Query: 3   QYHKFQRELYCD--LQGENIEAFNSASKTVKCLQLANGA------VYYDEEKHWKEVHDE 54
            Y +          L G    + +         +L N        +        +  H  
Sbjct: 541 LYRRLLNSRAVKSCLLGNGENSPH-LVCIGALKKLCNHPCLLFRTIQEKSTNPDQGEHSL 599

Query: 55  KIKALEVIIEKANAAPI---------------------------IVAYHFNSDLARLQKA 87
                E+  +  + A I                           ++  H+   L  LQ  
Sbjct: 600 YESIAELFPQDYDGAKISESESGKLLVLSKLLSGIRELSPSERVVLVSHYTQTLNILQAL 659

Query: 88  FPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFF 135
             Q             + +    +  +N       +      + G GLNL  G + L+ +
Sbjct: 660 CVQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSSDFIFLLSSKAGGVGLNL-IGASHLILY 718

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W+        +   + R  + G +R V +Y L+   +++E + QR  +K  +   ++
Sbjct: 719 DIDWNPAN-----DIQAMARVWRDGQRRTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVV 773

Query: 196 NALKK 200
           +  KK
Sbjct: 774 DLTKK 778


>gi|328702354|ref|XP_003241882.1| PREDICTED: TATA-binding protein-associated factor 172-like
            [Acyrthosiphon pisum]
          Length = 1782

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 77/249 (30%), Gaps = 59/249 (23%)

Query: 2    KQYHKFQRELY------CDLQGENIE----AFNSASKTVKCLQLANGAVYYDEEKHWKE- 50
            + Y  F +          +   +++       N          + N        +H +  
Sbjct: 1472 QLYEDFSKTHIHKHLSETETDEKSVNNPPNKNNILQALRYLQNVCNHPKLVLTPQHPQYS 1531

Query: 51   ----------------VHDEKIKALEVIIEKA------------NAAPIIVAYHFNSDLA 82
                             H  K+ AL+ ++               +    ++     S L 
Sbjct: 1532 NIIKQISESNSSLTDIQHAAKLPALKQLLMDCGIGLVSNNDTVISQHRALIFCQLKSMLN 1591

Query: 83   RLQKAFPQGRTLD-------------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             ++    +    +             +    +  +N +  I  L       G GLNL  G
Sbjct: 1592 IIENDLFKAHMPNVSYLRLDGSVPVSQRYALVNRFNVDPSIDTLIMTTQVGGLGLNLT-G 1650

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + ++F    W       M +   + R  + G K+ V VY LI ++T++E ++   + K 
Sbjct: 1651 ADTVIFVEHDWSP-----MKDLQAMDRAHRIGQKKVVNVYRLITRSTLEEKIMNFQKFKL 1705

Query: 189  TIQDLLLNA 197
               + ++++
Sbjct: 1706 KTANTVISS 1714


>gi|71988744|ref|NP_499301.2| hypothetical protein M03C11.8 [Caenorhabditis elegans]
 gi|31043816|emb|CAA88960.2| C. elegans protein M03C11.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|31043823|emb|CAA15960.2| C. elegans protein M03C11.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 989

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 31  KCLQLANGAVYYDEE--KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
           K  QL        +        +   K + L+V++ +       +++   F S L  L+ 
Sbjct: 728 KIHQLCERFRCTSKFLLNEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEV 787

Query: 87  AFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    K              I E+N    + +      + G G+NL    N ++  
Sbjct: 788 YLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTS-ANHIIIH 846

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G ++ V V  L+++ T++  +L   + K  ++  + 
Sbjct: 847 DIDFNP-----YNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQVT 901

Query: 196 NALKKE 201
           + +K +
Sbjct: 902 DGVKGQ 907


>gi|47206539|emb|CAF92235.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 993

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 59/245 (24%), Gaps = 57/245 (23%)

Query: 2   KQYH-KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------DEEKHWKEV 51
           K Y     R              +  +  +   +  N    +              + + 
Sbjct: 540 KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVVRTSCPPLSFHQK 599

Query: 52  HDEKIKAL-----------------------------EVIIEKANAAPIIVAYHFNSDLA 82
           H                                     +   K     +++       L 
Sbjct: 600 HTSAYHVPFQEAPVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLD 659

Query: 83  RLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130
            L+          +              I  +N              + G G+NL    +
Sbjct: 660 LLEDFLEFEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ASAD 718

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+        +    +R  + G  + V +Y  + + +++E + Q  + K  +
Sbjct: 719 TVIIYDSDWNP-----HNDIQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMML 773

Query: 191 QDLLL 195
             L++
Sbjct: 774 THLVV 778


>gi|302653552|ref|XP_003018600.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
 gi|291182257|gb|EFE37955.1| hypothetical protein TRV_07391 [Trichophyton verrucosum HKI 0517]
          Length = 1518

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 943  KQSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKL 1002

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                 T  K    I  +N         
Sbjct: 1003 QERGHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAF 1062

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 1063 LLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 1116

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 1117 RGSAEEKIMQIGKKKMALDHVLIERM 1142


>gi|302423562|ref|XP_003009611.1| ISWI chromatin-remodeling complex ATPase ISW2 [Verticillium
           albo-atrum VaMs.102]
 gi|261352757|gb|EEY15185.1| ISWI chromatin-remodeling complex ATPase ISW2 [Verticillium
           albo-atrum VaMs.102]
          Length = 846

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 68/208 (32%), Gaps = 28/208 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY---------DEEKHWKEVHDEKIKALE 60
           +   D     I      +  ++   +AN    +          E          K+  L+
Sbjct: 560 KRMVDAAKLEISRKKLGNPLMQLRLVANSPHNFFNPWGLENGPEIDESIVTASGKMLLLD 619

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EG 107
            ++         +++   F + L  L                  +  +    I  +N + 
Sbjct: 620 RLLPALLKRGHKVLIFSQFKTQLDILHDYCTFRKLKICRIDGSVSQAERQEHIDAFNSDS 679

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +      + G G+NL    + ++ F   W+ ++     +     R  + G  + V +
Sbjct: 680 DFKVFLLSTRAGGQGINLTA-ADTVILFDSDWNPQQ-----DLQAQDRVHRLGQTKPVVI 733

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + L  + T+++ +L  +  K  ++ L++
Sbjct: 734 FRLATKGTVEDSLLLSVEAKRRLEKLVI 761


>gi|257452288|ref|ZP_05617587.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1134

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHKFQRELY----CDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +   Y      ++ + +            +  Q+ +       E     +   K
Sbjct: 914  KFYEERRNYYYNMIHASIREKGLGKAQFFILQALNELRQITS-----CPEVKNSYISSSK 968

Query: 56   IKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
             + L   I +   N   ++V  ++         S   R         +       + ++ 
Sbjct: 969  KEMLIEQIVEAVENDHKVLVFTNYIGSIENICKSLEEREIAYLSMTGSTKDRQQLVNKFQ 1028

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 1029 KNEKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 1082

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VF Y LI ++TI+E +LQ    KS + D +++   
Sbjct: 1083 VFSYKLILKDTIEEKILQLQELKSKLLDDVISEDN 1117


>gi|157118940|ref|XP_001659258.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
 gi|108875506|gb|EAT39731.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
          Length = 2625

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    T  +    I E+N    I L      +   G+NL  G N +V F   W+   
Sbjct: 1467 YYRLDGSTTAQEREKLINEFNSNPNIHLFLVSTRAGSLGINL-VGANRVVVFDASWNP-- 1523

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G K+  FVY L+  N +++ +  R   K  + D +++    +
Sbjct: 1524 ---CHDTQAVCRVYRYGQKKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRIVDECNPD 1578


>gi|18403061|ref|NP_564568.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
 gi|14532630|gb|AAK64043.1| putative DNA-binding protein [Arabidopsis thaliana]
 gi|23296945|gb|AAN13207.1| putative DNA-binding protein [Arabidopsis thaliana]
 gi|332194424|gb|AEE32545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 981

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
             I+   +   L  ++ +  +     +                +  N+  + ++     +
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKA 887

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   LWW+        E   + R  + G  R V V  +  +NT+++
Sbjct: 888 GNLGLNMIAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRITIKNTVED 941

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  +       
Sbjct: 942 RILALQEEKRKMVASAFGE 960


>gi|9454567|gb|AAF87890.1|AC012561_23 Similar tp transcription factors [Arabidopsis thaliana]
          Length = 1062

 Score = 85.6 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
              I+   +   L  ++ +  +     +                +  N+  + ++     +
Sbjct: 909  KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKA 968

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   + R  + G  R V V  +  +NT+++
Sbjct: 969  GNLGLNMIAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRITIKNTVED 1022

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +L     K  +       
Sbjct: 1023 RILALQEEKRKMVASAFGE 1041


>gi|328777395|ref|XP_003249333.1| PREDICTED: TATA-binding protein-associated factor 172-like [Apis
            mellifera]
          Length = 1870

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 74/264 (28%), Gaps = 76/264 (28%)

Query: 3    QYHKFQ-RELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHW------ 48
             Y  F+ R     L        G +    +          + N       ++H       
Sbjct: 1535 LYEDFRTRHSAALLSSTSCSSTGNDSHGGHVFEALRYLRNVCNHPKLVLNQRHPLYTTVC 1594

Query: 49   -----------KEVHDEKIKALEVIIEKA------------------------------- 66
                       +  H  K+ AL+ ++                                  
Sbjct: 1595 NTLKQQKSTLAEIEHGAKLPALKQLLLDCGIGQPQQQQSRNSVSAGGTPDNQPPQQQQLV 1654

Query: 67   NAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            +    ++     + L                           +    +  +N +  I +L
Sbjct: 1655 SQHRALIFCQLKAMLDIVEKDLLRIHLPTVTYLRLDGSVPAAQRHSVVARFNADPSIDVL 1714

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   G GLNL  G + ++F    W+      M +   + R  + G K+ V VY LI 
Sbjct: 1715 LLTTQVGGLGLNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLIT 1768

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            ++T++E ++   + K    + +++
Sbjct: 1769 RSTVEEKIMGLQKFKLLTANTVIS 1792


>gi|320164200|gb|EFW41099.1| chromodomain helicase DNA binding protein 2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1939

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DPCT 100
              K+  L+ ++ +       +++       L    +    +G    +            +
Sbjct: 959  SGKMVLLDKLLVRLRETGHRVLIFSQMVRMLDILAEYMQRRGFGFQRLDGNVRGDLRKQS 1018

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N              + G G+NL    + ++ F   W+ +      +     R  +
Sbjct: 1019 LDHFNAEGSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAEARAHR 1072

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             G K  V +Y +I +N+++E +L+R + K  +  +++  +
Sbjct: 1073 IGQKNVVNIYRIITKNSVEEDILERAKKKMILDHVVIQRM 1112


>gi|258574887|ref|XP_002541625.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901891|gb|EEP76292.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1041

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 18/159 (11%)

Query: 51  VHDEKIKALEVIIEKANA-APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC 99
           V   KI+ L  I+++       IV   F S L +++            +  G   D    
Sbjct: 789 VSSTKIRHLLRILKREAGEFKFIVFSVFTSMLDKIEPFLKGAGIGYARYDGGMRNDLREA 848

Query: 100 TIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++    N     +L     +   GLNL    + +V    +W+       +E   + R  +
Sbjct: 849 SLDRLRNSSSTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNP-----FVEEQAIDRVHR 902

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 V VY +  ++T++  +L     K  +    +  
Sbjct: 903 LNQTVDVKVYKMTIRDTVEARILDLQERKRELASATIEG 941


>gi|146419519|ref|XP_001485721.1| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 888

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 37/207 (17%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE----------------VHDEKIKALEVIIE 64
                        ++ N       E   +E                    K+  L  ++ 
Sbjct: 549 SRGGILGLITLFKKICNSPSLLAPEGKVEESELLGLDFGLNVELNNKTSGKLLVLIPLLL 608

Query: 65  KAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN---EGKI 109
           +       +++  ++   L  L+++  +               +    + ++N       
Sbjct: 609 EIQRLGEKVVLVSNYTQTLKLLEQSVNKLNMKSLRLDGTTANKERDKLVNQFNKLSAEST 668

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GLNL  G + L+ F   W+       ++   + R  + G KR VF+Y 
Sbjct: 669 MIFLLSAKAGGVGLNL-VGASRLILFDNDWNPS-----VDLQAMARIHRDGQKRPVFIYR 722

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L+    IDE + QR   K+ + D  L+
Sbjct: 723 LLTTGCIDEKIFQRQLMKNNLSDKFLD 749


>gi|323450080|gb|EGB05963.1| hypothetical protein AURANDRAFT_1051 [Aureococcus anophagefferens]
          Length = 531

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 36/214 (16%)

Query: 8   QRELYCDLQGENI-------EAFNSASKTVKCLQLANGAVYYDEEK------HWKEVHDE 54
           QR     L GE         +  +  +   +  ++ +     D+           E    
Sbjct: 285 QRRAIAALLGEKRLQHALAGKQADVLAYIGRYKKICDHPSLDDDAGCDARARFSSERKSG 344

Query: 55  KIKALEVIIEKANAA----PIIVAYHFNSDLAR---------LQKAFPQGRTLDKDPCTI 101
           K+  L  ++ +         ++V  +  S L                  G+T  K    +
Sbjct: 345 KLHVLYRLLRELRGNGGQERVVVVANQTSSLELVSRLCSREGWPWCMLDGKTPLKQRKLL 404

Query: 102 -QEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             E+N+              + G GLNL  GG+ LV F   W+        ++    R  
Sbjct: 405 NDEFNDPACEHHFCFLLSSTAGGCGLNL-IGGSRLVLFDSSWNPAT-----DKQAAARCW 458

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G  R  + Y L+   TI+E + QR   K  + 
Sbjct: 459 RDGNPRRCYTYRLLTAGTIEEKIYQRQLAKEGLA 492


>gi|256269512|gb|EEU04799.1| Swr1p [Saccharomyces cerevisiae JAY291]
 gi|259145571|emb|CAY78835.1| Swr1p [Saccharomyces cerevisiae EC1118]
          Length = 1514

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAF 88
              QL         +K   +    K++ L +++++   N    ++       L    Q   
Sbjct: 1224 LHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLN 1283

Query: 89   PQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              G    +              + +N + +I +      S G G+NL  G + ++F+   
Sbjct: 1284 YHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFYDSD 1342

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++  
Sbjct: 1343 WNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQE 1396


>gi|307105234|gb|EFN53484.1| hypothetical protein CHLNCDRAFT_136777 [Chlorella variabilis]
          Length = 1320

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                         +      ++N +    +      + G GLNL    N +V F   W+ 
Sbjct: 898  YDYIMLDGSVPQAERQTLCDKFNTQPSTFIFLISTLAGGVGLNLTA-ANKVVIFDPSWNP 956

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  ++     R  + G KR V VY LIA  T++E++  R   K    +++L  
Sbjct: 957  A-----MDLQAQDRAFRIGQKRDVSVYRLIAAGTMEEIIYDRQLYKQMHSEIVLEG 1007


>gi|300709133|ref|XP_002996734.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
 gi|239606056|gb|EEQ83063.1| hypothetical protein NCER_100152 [Nosema ceranae BRL01]
          Length = 1243

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA----APIIVAYH 76
               N      +   L N A +    K   EV   K+K LE II           I++ + 
Sbjct: 1040 SIQNKCDGLKRTRDLLNAASHILYFKTSSEV-SCKMKGLEDIINLYGGEDIKNKILIFFQ 1098

Query: 77   FNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            + + +                         K      ++N G IP+LF      G GLNL
Sbjct: 1099 YKTTIDFVLQDFKKKYNLKYLRLDGSVPASKRAKIALDFNTGNIPILFLTTHIGGLGLNL 1158

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              G + ++F+   W+        +   + R  + G K  V V+ LI +++I+E V+    
Sbjct: 1159 T-GADTVIFYEHDWNP-----FNDLQAMDRAHRIGQKNTVNVFRLITKDSIEEKVMDLQS 1212

Query: 186  TKSTIQDLLLNALKKET 202
             K  I   ++     + 
Sbjct: 1213 FKVFIASSVVTQQNADI 1229


>gi|222637545|gb|EEE67677.1| hypothetical protein OsJ_25316 [Oryza sativa Japonica Group]
          Length = 641

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 53  DEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
             K++AL  ++     +   +  ++   F   L  L+                 T  K  
Sbjct: 464 SSKVQALLKLLRRSQSEDPLSKSVIFSQFRKMLILLEGPLKAAGFNILRLDGSMTAKKRS 523

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             I+++         +L A   + G G+NL    + +  F  WW+       +E   + R
Sbjct: 524 EVIRQFGCVGPDSPTVLLASLKAAGAGVNLTA-ASTVYLFDPWWNPG-----VEEQAMDR 577

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G  + V V  LI +++I+E +L+    K  +        K 
Sbjct: 578 VHRIGQTKEVKVVRLIVKDSIEERMLELQERKKKLISGAFGRKKG 622


>gi|297806511|ref|XP_002871139.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316976|gb|EFH47398.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 861

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--- 110
           +++     +V   F   L  L+                 TL K    I E+   ++    
Sbjct: 701 QESPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTLKKRTQVIGEFGNPELTGPV 760

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL    + +     WW+    +Q ++RI      + G K+ V +  +
Sbjct: 761 VLLASLKASGAGINLTA-ASRVYLLDPWWNPAVEEQAMDRI-----HRIGQKQEVKMIRM 814

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           IA+++I+E VL+  + K  + +    A K+ 
Sbjct: 815 IARDSIEERVLELQQKKKNLAN---EAFKRR 842


>gi|58262478|ref|XP_568649.1| DNA dependent ATPase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57230823|gb|AAW47132.1| DNA dependent ATPase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1036

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  + +      ++     + G GLNL    N +V F   W+  +     +   +
Sbjct: 686 ERQEMIDRFQDLERDHFIMLISTRAGGVGLNLTA-ANKVVIFDPSWNPAD-----DLQAM 739

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 740 DRAFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 780


>gi|240280484|gb|EER43988.1| RING-13 protein [Ajellomyces capsulatus H143]
          Length = 1188

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               +R+    L+     +  +  + ++ L                 V   KI+    I+ 
Sbjct: 971  KAVERKSLPQLKKNAARSAEAKREYMRYL-------------TDNWVTSAKIEKTMEILR 1017

Query: 65   KANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW 104
               +            IV   F S L               +     +   ++   ++  
Sbjct: 1018 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1077

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1078 DSQNHTIMLISLKAGNSGLNLVA-ASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1131

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V V+ ++   T+++ +L+    K  + +  L+    ++I
Sbjct: 1132 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSI 1170



 Score = 41.7 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L    I     N     ++  Q        D+          KI
Sbjct: 786 LYEGLESKTQIRFNRYLDEGTIGRNYSNILVLLLRLRQACCHPHLIDDLGVEANAATAKI 845

Query: 57  KALEV 61
             +E 
Sbjct: 846 DLIEN 850


>gi|302786786|ref|XP_002975164.1| hypothetical protein SELMODRAFT_102612 [Selaginella moellendorffii]
 gi|300157323|gb|EFJ23949.1| hypothetical protein SELMODRAFT_102612 [Selaginella moellendorffii]
          Length = 492

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 36/228 (15%)

Query: 4   YHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKH-------------W 48
           Y         DL          N  +  ++  +L N     D  +               
Sbjct: 221 YRALYENRISDLIKGTQPSNMPNLRNMAMELRKLCNHPFLCDGLEEDFASKHANASSVSN 280

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L  ++     +   +++   F   L  L+          +          
Sbjct: 281 LVQSSGKMVLLNKLLPMLRDSNRRVLIFSQFTIMLDILEDYLSSEGYTFERIDGKIRGSE 340

Query: 98  --PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I  +  N+ K         + G G+ L    +  + +   W+ +      +   +
Sbjct: 341 RQQAAIDRYSANDCKTFAFLLSTRAGGLGITLTA-ADTCIIYDSDWNPQN-----DLQAM 394

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V +Y LI +NT ++ + +    K  + + +L    ++
Sbjct: 395 ARCHRIGQTKDVRIYRLITRNTYEQHLFECSSRKYGLDEAVLGRFAED 442


>gi|195031145|ref|XP_001988297.1| GH10643 [Drosophila grimshawi]
 gi|193904297|gb|EDW03164.1| GH10643 [Drosophila grimshawi]
          Length = 1931

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 67/225 (29%), Gaps = 34/225 (15%)

Query: 2    KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
            KQY+K    +      +G+        +  ++  +  N A      +             
Sbjct: 796  KQYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELFGLQQDEALQ 855

Query: 52   ------HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                      +    +   K     +++       L  L     +     +         
Sbjct: 856  TLLKGSGKLVLLDKLLCKLKDTGHRVLIFSQMVRMLDVLADYLQKRHFSFQRLDGSIKGE 915

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 +  +N              + G G+NL    + ++ F   W+ +      +    
Sbjct: 916  MRRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQ 969

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 970  ARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 1014


>gi|207346437|gb|EDZ72930.1| YDR334Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1514

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAF 88
              QL         +K   +    K++ L +++++   N    ++       L    Q   
Sbjct: 1224 LHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLN 1283

Query: 89   PQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              G    +              + +N + +I +      S G G+NL  G + ++F+   
Sbjct: 1284 YHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFYDSD 1342

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++  
Sbjct: 1343 WNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQE 1396


>gi|39978259|ref|XP_370517.1| hypothetical protein MGG_07014 [Magnaporthe oryzae 70-15]
 gi|145013403|gb|EDJ98044.1| hypothetical protein MGG_07014 [Magnaporthe oryzae 70-15]
          Length = 986

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 30/199 (15%)

Query: 14  DLQGENIEAFNSASK----TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           DL+   IE     +K      +            E        +  + +L+ +    ++ 
Sbjct: 783 DLEQPEIEQDQEMTKKNSIINRIR---------MENWTSSTKMEMLVHSLQKLRSDNSSH 833

Query: 70  PIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             I+   F   L  ++                 T  +   +I  + N   +        +
Sbjct: 834 KSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVECFLVSLKA 893

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +  L  +++I+ 
Sbjct: 894 GGVALNLTE-ASRVFIVDPWWNPAAEWQSADRV-----HRIGQTRPVVITRLCIEDSIES 947

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +++    K+ + +  +N+
Sbjct: 948 RIVELQEKKTKMINSTVNS 966


>gi|195144322|ref|XP_002013145.1| GL23967 [Drosophila persimilis]
 gi|194102088|gb|EDW24131.1| GL23967 [Drosophila persimilis]
          Length = 1060

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
               K+  +  I++    K N    I+   + S L  L+                  +   
Sbjct: 887  PSTKMLKVMEILKSSILKDNNDKAIIVSQWTSVLEILRDHLENDKLSTLSLNGSIPVKNR 946

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+      +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 947  QEIVNQFNDQHNQKRILLLSLTAGGVGLNL-VGANHLLLLDLHWNPQL-----EAQAQDR 1000

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G K+ V +Y  +  +T+++ +L   + K  + + +L
Sbjct: 1001 IYRVGQKKDVMIYKFVCLDTVEQRILALQQHKLELANGVL 1040



 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 14/51 (27%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y   ++        + +++       ++  Q+       D     +E    
Sbjct: 758 YKLHEKFAKMAGNKKEVKSHEILVLLLRLRQICCHPGLIDSMLEGEEAKSM 808


>gi|212546587|ref|XP_002153447.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210064967|gb|EEA19062.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1084

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 46   KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  ++   K N    ++   F             +            
Sbjct: 901  KNQEWMNSGKVDKLCELLKKFKENGDRTLIFSQFTLVMDILEYVLETINMRFFRLDGRTN 960

Query: 94   LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  +  + +IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 961  VEDRQSILDAFYEQTEIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 1014

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G  R V V  L+ + TI+E +    +TK T+   ++  
Sbjct: 1015 ENRAHRVGQTREVEVIRLVTKGTIEEQIYALGQTKLTLDQRVVGD 1059


>gi|190345850|gb|EDK37807.2| hypothetical protein PGUG_01905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 761

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 71/189 (37%), Gaps = 29/189 (15%)

Query: 31  KCLQLANGAVYYDEEKHWKE-----------VHDEKIKALEVIIEKA-NAAPIIVAYHFN 78
           +   + N    + E     +            +  KI+ L+ +I +      +++   F 
Sbjct: 475 QLRSICNSPYTFYEPFPLNDSKTSIFMEVFYKNSAKIQVLDQLINELLPDHKLLIFSQFT 534

Query: 79  SDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
             L  L                  + +     I ++N +    +      + G G+NL  
Sbjct: 535 KMLDLLHDWLDFKNIGFCRLDGSTSHEDRDTQIDQFNTDKSKKVFLLSTRAGGLGINLTA 594

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +V F   W+ +     ++   + R  + G K+ V +Y  + +N+++E+++ +  +K
Sbjct: 595 -ADTVVIFDNDWNPQ-----VDLQAIDRVHRIGQKKPVKIYRFLIKNSVEEILISKSYSK 648

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 649 RFLEKLVIQ 657


>gi|289613152|emb|CBI59746.1| unnamed protein product [Sordaria macrospora]
          Length = 1171

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
             +     KI    +     +   ++V  H    L  LQ  F              + ++
Sbjct: 585 DPEFCGKWKILRKLLRFWHESGDKVLVFSHSVRLLRILQHLFHNTSYNVSFLDGALSYEE 644

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N + +  +      + G GLN+    N +V F   W+        +     R
Sbjct: 645 RQRVVDEFNTDPRQFVFLISTKAGGVGLNITS-ANKVVIFDPHWNPS-----YDLQAQDR 698

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 699 AYRIGQIRDVDVFRLVSAGTIEEIVYARQIYKQQQAN 735


>gi|154275942|ref|XP_001538816.1| DNA repair protein RAD16 [Ajellomyces capsulatus NAm1]
 gi|150413889|gb|EDN09254.1| DNA repair protein RAD16 [Ajellomyces capsulatus NAm1]
          Length = 927

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++                 T  +   +I+ + N   + +      
Sbjct: 773 HKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDVEVFLVSLK 832

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 833 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 886

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ +    +N  + E + 
Sbjct: 887 SRMVLLQEKKANMIRGTINKDQSEALE 913


>gi|323349205|gb|EGA83435.1| Swr1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1469

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 69/179 (38%), Gaps = 19/179 (10%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAF 88
              QL         +K   +    K++ L +++++   N    ++       L    Q   
Sbjct: 1179 LHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLN 1238

Query: 89   PQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              G    +              + +N + +I +      S G G+NL  G + ++F+   
Sbjct: 1239 YHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GADTVIFYDSD 1297

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+       +++    R  + G  R V +Y  ++++TI+  +L++   K  + ++++  
Sbjct: 1298 WNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQE 1351


>gi|317058831|ref|ZP_07923316.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
 gi|313684507|gb|EFS21342.1| SWF/SNF family helicase [Fusobacterium sp. 3_1_5R]
          Length = 1009

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2   KQYHKFQRELY----CDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + +   Y      ++ + +            +  Q+ +       E     +   K
Sbjct: 789 KFYEERRNYYYNMIHASIREKGLGKAQFFILQALNELRQITS-----CPEVKNSYISSSK 843

Query: 56  IKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
            + L   I +   N   ++V  ++         S   R         +       + ++ 
Sbjct: 844 KEMLIEQIVEAVENDHKVLVFTNYIGSIENICKSLEEREIAYLSMTGSTKDRQQLVNKFQ 903

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 904 KNEKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 957

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           VF Y LI ++TI+E +LQ    KS + D +++   
Sbjct: 958 VFSYKLILKDTIEEKILQLQELKSKLLDDVISEDN 992


>gi|302504244|ref|XP_003014081.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
 gi|291177648|gb|EFE33441.1| hypothetical protein ARB_07801 [Arthroderma benhamiae CBS 112371]
          Length = 1518

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 943  KQSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKL 1002

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                 T  K    I  +N         
Sbjct: 1003 QERGHRVLIFSQFLDFLDIVEDFLDGLGLKHLRLDGSMTSLKKQKNIDAYNAPGSEYFAF 1062

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 1063 LLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 1116

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 1117 RGSAEEKIMQIGKKKMALDHVLIERM 1142


>gi|295661001|ref|XP_002791056.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb01]
 gi|226280983|gb|EEH36549.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb01]
          Length = 1481

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKA 66
            +  E  N  +  ++  +       Y +    + V+             K++ LE+++ K 
Sbjct: 947  KQTERHNLNNILMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLVPKL 1006

Query: 67   N--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
                  +++   F  +L  ++        L +              I ++N    P    
Sbjct: 1007 QERGHRVLIFSQFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQKQIDDYNAPDSPYFAF 1066

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S G G+NL    + ++     ++  +     +   ++R  + G ++ V V+ L+ 
Sbjct: 1067 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQQKKVLVFQLVT 1120

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1121 KASAEEKIMQIGKKKLALDQVLIEHMDAE 1149


>gi|281211860|gb|EFA86022.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1897

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 59/245 (24%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIKALEVIIEK 65
            +E     +       +         +L +   +   + H +    + + K    ++   +
Sbjct: 1583 QETKKSTKKGGQATTHVFQALQYLRKLCSHPQFVLNQNHPQYNAIIKELKASKSDITDIE 1642

Query: 66   AN------------------------------------AAPIIVAYHFNSDLARLQKAFP 89
             +                                       +++     S L  ++    
Sbjct: 1643 HSPKLTTLKELLLECGIGVQSANANSNNNADLSQDVTTQHRVLIFAQMKSMLDVVETDLL 1702

Query: 90   QGRT-------------LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +                  K    + ++N +  I LL       G GLNL  G + ++F 
Sbjct: 1703 KHHMPSVTYLRMDGSTDPMKRHSIVNQFNSDPSIDLLLLTTHVGGLGLNLT-GADTVIFL 1761

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+      M +   + R  + G K+ V VY LI   T++E ++   R K  I + ++
Sbjct: 1762 EHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITAGTLEEKIMGLQRFKLNIANTIV 1816

Query: 196  NALKK 200
            N   +
Sbjct: 1817 NQENQ 1821


>gi|257465912|ref|ZP_05630223.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1134

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHKFQRELY----CDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +   Y      ++ + +            +  Q+ +       E     +   K
Sbjct: 914  KFYEERRNYYYNMIHASIREKGLGKAQFFILQALNELRQITS-----CPEVKNSYISSSK 968

Query: 56   IKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
             + L   I +   N   ++V  ++         S   R         +       + ++ 
Sbjct: 969  KEMLIEQIVEAVENDHKVLVFTNYIGSIENICKSLEEREIAYLSMTGSTKDRQQLVNKFQ 1028

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 1029 KNEKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 1082

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VF Y LI ++TI+E +LQ    KS + D +++   
Sbjct: 1083 VFSYKLILKDTIEEKILQLQELKSKLLDDVISEDN 1117


>gi|256075325|ref|XP_002573970.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
 gi|238659162|emb|CAZ30203.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
          Length = 1323

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 69/256 (26%), Gaps = 65/256 (25%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------------------- 41
           K Y +  + ++  DL       F S         L N                       
Sbjct: 468 KLYREYLESQVCKDLLNGKGNIFPSLIL---LRNLCNHPDLATGGPRDSCFLNEEFESDK 524

Query: 42  ---------YDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK---- 86
                    Y   +        K+  +  ++         +++       L  L++    
Sbjct: 525 QGIENVCLSYSWSRFGCPRRSSKMLVVASLLKNWYDQGHKVLLFSQSRRMLTLLERLVQL 584

Query: 87  ------AFPQGRTLDKDPCTIQEWN---------------EGKIPLLFAHPASCGHGLNL 125
                        + +    I+ +N                  I L        G G+NL
Sbjct: 585 MKFSYLRMDGTTPVSQRHELIRRFNYRSTSDSEKIDRTSDHLDIFLFLLTTRVGGLGVNL 644

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N ++ +   W+        +     R  + G  R V +Y L+   TI+E +  R  
Sbjct: 645 TS-ANRVLIYDPDWNPTT-----DLQARERAWRIGQSRDVVIYRLLTSGTIEEKIYHRQI 698

Query: 186 TKSTIQDLLLNALKKE 201
            K  + + +L   +++
Sbjct: 699 FKQFLTNRILKNPRQQ 714


>gi|146088639|ref|XP_001466107.1| DNA repair protein [Leishmania infantum JPCM5]
 gi|134070209|emb|CAM68545.1| putative DNA repair protein [Leishmania infantum JPCM5]
          Length = 1092

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAF----------P 89
             +      K +H  K+ A+   IEK      ++V   F S L   Q              
Sbjct: 911  IFARLDPQKPLHGTKLDAIANYIEKVPKDEKVVVFSQFGSMLDLTQYWLQRRSIRAVKLC 970

Query: 90   QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               TL +    +Q + ++  + ++     + G GLNLQ   N +V    WW+        
Sbjct: 971  GSLTLTQRQSVLQAFLHDQNVRVILISLKAGGEGLNLQ-VANHVVLTDPWWNPAVEM--- 1026

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V R  + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1027 --QAVQRAHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|167519292|ref|XP_001743986.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777948|gb|EDQ91564.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1542

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 96   KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +      ++N  +    L      +   GLN+ YGGN ++ F + W+        +   +
Sbjct: 1077 RRKDMCDQFNQPDEPCRLFLVSIRAGATGLNM-YGGNRVILFDVSWNPAT-----DNQAI 1130

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +R  + G ++ V+VY L+A  TI+E +L R   K TI   +++
Sbjct: 1131 SRCHRYGQQKTVYVYRLVAAGTIEEHILSRQINKMTIFQNVID 1173


>gi|292495070|sp|P38086|RDH54_YEAST RecName: Full=DNA repair and recombination protein RDH54; AltName:
           Full=RAD homolog 54; AltName: Full=Recombination factor
           TID1; AltName: Full=Two hybrid interaction with DMC1
           protein 1; Includes: RecName: Full=DNA topoisomerase;
           Includes: RecName: Full=Putative helicase
 gi|433837|emb|CAA53930.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|536326|emb|CAA85017.1| RDH54 [Saccharomyces cerevisiae]
          Length = 958

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 34/213 (15%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------------VHDEKIKA 58
             L    +   +S        ++ N       + ++K               ++  K+K 
Sbjct: 609 ARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSGKLKV 668

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L  ++    K     ++V  ++   L  ++                    +    +  +N
Sbjct: 669 LMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFN 728

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I        S G GLNL  G + L+ F   W+       ++   ++R  + G K+ 
Sbjct: 729 RNPAIFGFLLSAKSGGVGLNL-VGRSRLILFDNDWNPS-----VDLQAMSRIHRDGQKKP 782

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            F+Y L+    IDE +LQR   K+++    L  
Sbjct: 783 CFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGD 815


>gi|320038964|gb|EFW20899.1| DNA repair and recombination protein RAD26 [Coccidioides posadasii
           str. Silveira]
          Length = 961

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 45/215 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE-----------------------KHWKEVHDEKIK 57
            + ++        +L N       +                       +H+      KI+
Sbjct: 588 NSESALQLITILKKLCNSPSLLTLKVLKDENPNCTISSLISTLPPNLLRHFSPASSGKIR 647

Query: 58  ALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            L+ ++   ++     I++  ++ S L  L                     K    + ++
Sbjct: 648 VLDQLLHNLHSTTSEKIVLVSNYTSTLNLLAALLSSLSLPYLRLDGSTPASKRQFLVDDF 707

Query: 105 N---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           N               + G GLNL  G + LV F + W+        +   + R  + G 
Sbjct: 708 NRSSSKSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPAT-----DIQAMARIHRDGQ 761

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 762 KRHCHIYRMLLRGGLEEKIWQRQVTKLGLSDSVMD 796


>gi|242046730|ref|XP_002461111.1| hypothetical protein SORBIDRAFT_02g040960 [Sorghum bicolor]
 gi|241924488|gb|EER97632.1| hypothetical protein SORBIDRAFT_02g040960 [Sorghum bicolor]
          Length = 822

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
             K++AL  ++     +   +  +V   F   L  L+    +            +  K  
Sbjct: 646 SSKVQALLKLLKASQNEDPLSKSVVFSQFKQMLILLESPLRKAGFKTLRLDGSMSAKKRL 705

Query: 99  CTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             IQE+  G      +L A   + G G+NL    + +  F  WW+       +E   + R
Sbjct: 706 QVIQEFTHGGPDSPTVLLASLKAAGAGVNLTA-ASTVYLFDPWWNPG-----VEEQAMDR 759

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+ V V  LI +++I+E +L     K  +      
Sbjct: 760 VHRIGQKKEVKVIRLIVKDSIEERILTLQERKKRLISSAFG 800


>gi|115460732|ref|NP_001053966.1| Os04g0629300 [Oryza sativa Japonica Group]
 gi|39546244|emb|CAE04253.3| OSJNBa0089N06.14 [Oryza sativa Japonica Group]
 gi|113565537|dbj|BAF15880.1| Os04g0629300 [Oryza sativa Japonica Group]
 gi|125549851|gb|EAY95673.1| hypothetical protein OsI_17539 [Oryza sativa Indica Group]
 gi|125591732|gb|EAZ32082.1| hypothetical protein OsJ_16271 [Oryza sativa Japonica Group]
 gi|215717116|dbj|BAG95479.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1051

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  L+ +    R   +              ++E+N + ++ ++     +
Sbjct: 898  KAIVFSQWTGLLDLLELSLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKA 957

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++    WW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 958  GNLGLNMVAACH-VIMIDPWWNP-----YAEDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1011

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1012 RILALQEKKRKMVQSAFGEDK 1032


>gi|134085395|ref|NP_001076824.1| helicase ARIP4 [Xenopus (Silurana) tropicalis]
 gi|166217265|sp|A4IHD2|ARIP4_XENTR RecName: Full=Helicase ARIP4; AltName: Full=Androgen
           receptor-interacting protein 4; AltName: Full=RAD54-like
           protein 2
 gi|134023855|gb|AAI35474.1| rad54l2 protein [Xenopus (Silurana) tropicalis]
          Length = 1396

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   +  +    I ++N+    K+ L      +   G+NL  G N +V F   W+ 
Sbjct: 777 YYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP 835

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  +   V R  + G ++  ++Y L++  T+++ +  R  TK  + D +++ L  E
Sbjct: 836 -----CHDAQAVCRVYRYGQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPE 890

Query: 202 T 202
            
Sbjct: 891 V 891


>gi|90399293|emb|CAH68165.1| H0323C08.5 [Oryza sativa Indica Group]
 gi|116312065|emb|CAJ86429.1| H0303G06.18 [Oryza sativa Indica Group]
          Length = 1051

 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
              IV   +   L  L+ +    R   +              ++E+N + ++ ++     +
Sbjct: 898  KAIVFSQWTGLLDLLELSLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKA 957

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++    WW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 958  GNLGLNMVAACH-VIMIDPWWNP-----YAEDQAVDRAHRIGQTRPVTVSRLTIKDTVED 1011

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1012 RILALQEKKRKMVQSAFGEDK 1032


>gi|300121547|emb|CBK22066.2| unnamed protein product [Blastocystis hominis]
          Length = 787

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 45/240 (18%)

Query: 2   KQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK------------- 46
           K Y            +  ++    +  + T++  +  N        +             
Sbjct: 406 KFYRAVYDHNTSVRSVSTDSKNLPSLMNITMELRKCCNHPFLIRGAESTVIEEICAVYPF 465

Query: 47  ----------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ---- 90
                      +      K+  L+ ++ K  A    +++     + L  +Q         
Sbjct: 466 RSSLAPELALKYITYASGKMVVLDKLLPKLRAQGHRVLLFSQMVNMLNIIQDYLSMKGYP 525

Query: 91  ------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                 G  +      I  ++       +      + G G+NL    + ++ +   W+ +
Sbjct: 526 FERIDGGVKISDRQAAIDRFSTPGSDRFIFLICTRAGGVGINLTA-ADTVIIYDSDWNPQ 584

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 +     R  + G  +AV VY LI   T +  + Q+   K  +   +LN LK+  
Sbjct: 585 N-----DIQAQARCHRIGQDKAVKVYRLITNRTYEMEMFQKANMKLGLDKAVLNPLKQNI 639


>gi|193786196|dbj|BAG51479.1| unnamed protein product [Homo sapiens]
          Length = 737

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 130 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 189

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 190 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 249

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 250 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 305

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 306 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 354


>gi|145527844|ref|XP_001449722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417310|emb|CAK82325.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ- 90
            Q                    K+  L+ +++  K     +++       L  L++     
Sbjct: 869  QAC---FILPNSPDSLIASSSKLLQLDRLLKDLKQKQWRVLIFCQMTRMLDILEEYMLHK 925

Query: 91   ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +  D+     +     KI        + G G+ L    + ++F+   W+
Sbjct: 926  GYTYFRMDGQCQINDRRDMVNEFQQNDKIFAFLLSTRAGGLGITLTQ-ADAVIFYDNDWN 984

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                   ++     R  + G  + V+VY LI + TI+E +++R + K  +Q  +
Sbjct: 985  PT-----MDAQATDRAHRIGRTKDVYVYRLITKGTIEERIVKRAQQKQNVQSTV 1033


>gi|328353422|emb|CCA39820.1| DNA helicase [Pichia pastoris CBS 7435]
          Length = 1103

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 29/205 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAP 70
            Q   +   N  SK  K        V   E  +   +        KI AL   ++  +   
Sbjct: 886  QENEVLCPNCRSKISKLRLFKTHLVEDSERGYSVTLFHPYGSSSKINALLRHLKTIHETK 945

Query: 71   I--IVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTIQEWNE----GKIPLL 112
               +V   F+S L  +Q              F    +L +    ++E+N+    G I +L
Sbjct: 946  EHVVVISQFSSFLDLIQAELSKYKKEFKVMKFDGQLSLSERQVVLKEFNDNPENGGINVL 1005

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +       WW        +E   + R  + G  + V V   I 
Sbjct: 1006 LLSLKAGGVGLNLTN-ASRAFMMDPWWSPS-----VEAQAIDRLHRIGQSKNVNVVRFIM 1059

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I+E +L+    K  + + + + 
Sbjct: 1060 EGSIEEKMLKVQERKKQLGEAVGDD 1084


>gi|325090620|gb|EGC43930.1| DNA repair protein RAD16 [Ajellomyces capsulatus H88]
          Length = 848

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++                 T  +   +I+ + N   + +      
Sbjct: 694 HKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDVEVFLVSLK 753

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 754 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 807

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ +    +N  + E + 
Sbjct: 808 SRMVLLQEKKANMIRGTINKDQSEALE 834


>gi|225556044|gb|EEH04334.1| DNA repair protein RAD16 [Ajellomyces capsulatus G186AR]
          Length = 848

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++                 T  +   +I+ + N   + +      
Sbjct: 694 HKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDVEVFLVSLK 753

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 754 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 807

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ +    +N  + E + 
Sbjct: 808 SRMVLLQEKKANMIRGTINKDQSEALE 834


>gi|291239595|ref|XP_002739708.1| PREDICTED: brahma-like protein [Saccoglossus kowalevskii]
          Length = 1523

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 42/223 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDE------------ 44
             Y   QR       G   +           +  ++  +L N    + +            
Sbjct: 911  LYRHMQRNGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKLCNHPFMFPQIEEAFCEHLGQT 970

Query: 45   ----EKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
                +         K + L+ I+ K    N   ++ +               +G    + 
Sbjct: 971  GGIVQGADLYRSSGKFELLDRILPKLKACNHKALLFSQMTTLMTILEDYFAHRGFRYLRL 1030

Query: 97   --------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        ++ +N    P  +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 1031 DGTTKSDDRAKLLEMFNAPGSPYNIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ--- 1086

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              +     R  + G K  V V  L+  N+++E +L   R K  
Sbjct: 1087 --DLQAQDRAHRIGQKSEVRVLRLLTVNSVEEKILAAARYKLN 1127


>gi|71022805|ref|XP_761632.1| hypothetical protein UM05485.1 [Ustilago maydis 521]
 gi|74699657|sp|Q4P328|SWR1_USTMA RecName: Full=Helicase SWR1
 gi|46101185|gb|EAK86418.1| hypothetical protein UM05485.1 [Ustilago maydis 521]
          Length = 1830

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
             LQ   G +   +      +   K     ++I       + +   F +            
Sbjct: 1527 LLQYDCGKLQQLD----ILMRRLKEGGHRILIFTQMTRVLDILESFLNYHGYRYLRLDGA 1582

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++      +++N + +I        S G G+NL  G + ++F+ L W+     Q ++R
Sbjct: 1583 TKVESRQALTEQFNRDARISAFILSTRSGGLGINLT-GADTVLFYDLDWNAAIEAQCMDR 1641

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   + G  R V +Y  + ++TI+E +L++   K  + ++++ 
Sbjct: 1642 -----AHRIGQTRDVHIYRFVTEHTIEENMLRKANQKRLLDNVVIQ 1682


>gi|308483748|ref|XP_003104075.1| hypothetical protein CRE_01100 [Caenorhabditis remanei]
 gi|308258383|gb|EFP02336.1| hypothetical protein CRE_01100 [Caenorhabditis remanei]
          Length = 1083

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K+     I+          ++   + S L  ++K    G                   
Sbjct: 903  SCKMHKTLEIVRDILDRKEKVVIVSQWTSVLNLVEKHIQNGGHNYTSITGQVLVKDRQER 962

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  G ++++   L W+    QQ  +RI      +
Sbjct: 963  VDSFNQEKGGAQVMLLSLTAGGVGLNLVGGNHLIMI-DLHWNPALEQQACDRI-----YR 1016

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ V ++ L+ + TI++ V+     K  +   +L+      ++
Sbjct: 1017 MGQKKPVHIHRLVVKGTIEQRVMDLQEKKLALAASVLDGTATRKMN 1062


>gi|47219154|emb|CAG01817.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1805

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 41/174 (23%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
              K+  L+V++   K+    +++       +  L++                +  ++   
Sbjct: 1277 SGKLHTLDVLLSRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1336

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGN-----------------------ILVFFS 136
                 +   I +      + G G+NL                             ++F+ 
Sbjct: 1337 VADFQSRTDIFVFLLSTRAGGLGINLTAADTVSGGRSSSGSARTGHVGDVVLLFQVIFYD 1396

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              W+       +++  + R  + G  + V VY LI Q TI+E +LQR + KS +
Sbjct: 1397 SDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICQGTIEERILQRAKEKSEV 1445


>gi|268576823|ref|XP_002643391.1| C. briggsae CBR-CSB-1 protein [Caenorhabditis briggsae]
 gi|187026766|emb|CAP34339.1| CBR-CSB-1 protein [Caenorhabditis briggsae AF16]
          Length = 1015

 Score = 85.2 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 29/215 (13%)

Query: 2   KQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
           + Y +F   +    +   NI+AF       K   + N    Y + K   E         K
Sbjct: 521 RIYQEFCGSIEVQQILERNIKAFGG---INKLGDICNHPGIYRKMKPGTEKFGRMHDSGK 577

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL-------------ARLQKAFPQGRTLDKDPCTIQ 102
           +  L  +  +    P      F   L                        +L +    I+
Sbjct: 578 VVMLFRLFRRWFKNPNNRVVLFTQRLAVVDMLAFYLDKKQIAYCTLTGNNSLPERTRIIK 637

Query: 103 EWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + E   I +      + G GLNL    N  V F   W+ +      +     R  + G 
Sbjct: 638 RFEEDLSIKVFLMTTRTGGLGLNL-ASANKAVIFDPDWNPQA-----DNQAKMRIYRMGQ 691

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  V +  L++  +I++    +   K  + + LLN
Sbjct: 692 QHKVTIVRLVSNGSIEDRKYFKQIQKENLAEQLLN 726


>gi|240278465|gb|EER41971.1| DNA repair protein RAD16 [Ajellomyces capsulatus H143]
          Length = 848

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++                 T  +   +I+ + N   + +      
Sbjct: 694 HKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDVEVFLVSLK 753

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 754 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 807

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ +    +N  + E + 
Sbjct: 808 SRMVLLQEKKANMIRGTINKDQSEALE 834


>gi|156375433|ref|XP_001630085.1| predicted protein [Nematostella vectensis]
 gi|156217099|gb|EDO38022.1| predicted protein [Nematostella vectensis]
          Length = 221

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            +  +                  +  +N +  I +L       G GLNL  G + ++F  
Sbjct: 50  TNMPSVTYLRLDGSTPAGSRHSIVHRFNNDPSIDVLLLTTHVGGLGLNLT-GADTVIFVE 108

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY L+ + T++E ++   + K TI + +++
Sbjct: 109 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLVTKGTLEEKIMGLQKFKLTIANTVIS 163


>gi|67604075|ref|XP_666591.1| RIKEN cDNA A730019I05 gene [Cryptosporidium hominis TU502]
 gi|54657614|gb|EAL36361.1| RIKEN cDNA A730019I05 gene [Cryptosporidium hominis]
          Length = 2267

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 34/193 (17%)

Query: 32   CLQLANGAVYY--------------DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
              +  N                   +E          K+  +  ++ K  A    +++  
Sbjct: 1661 LRKCCNHPFQVVGVEEREVALCKTSEERYKKMIELSGKMVLMGKLLPKLKAEGHRVLIFS 1720

Query: 76   HFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
             F   L  L++                        I  +N       +      + G G+
Sbjct: 1721 QFIQTLTLLEELVEHHGWGYERLDGSIRGTDRNAAITRFNAEDSDKFVFLLSTRAGGLGI 1780

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++ F   W+ +      +     R  + G  R V VY LI   T +  + +R
Sbjct: 1781 NLTS-ADTVIIFDSDWNPQN-----DVQACARAHRIGQTRDVKVYRLITARTYEAEMFER 1834

Query: 184  LRTKSTIQDLLLN 196
               K  +   + +
Sbjct: 1835 AGRKLGLNTAVFH 1847


>gi|254578924|ref|XP_002495448.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
 gi|238938338|emb|CAR26515.1| ZYRO0B11638p [Zygosaccharomyces rouxii]
          Length = 1478

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 38/222 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------------- 50
             +       G     F+  +   +  + +N    +D  +                    
Sbjct: 637 LTKNYSALTAGAKGGHFSLLNIMNELKKGSNHPYLFDNAEERVLEKFGDGNRSRENILRG 696

Query: 51  --VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
             +   K+  L+ ++   K +   +++       L  L                    ++
Sbjct: 697 LIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSNQ 756

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +I  +N       +      + G G+NL    + ++ F   W+ +      +   + 
Sbjct: 757 RRISIDHFNAPDSNDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMA 810

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 811 RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 852


>gi|254570913|ref|XP_002492566.1| DNA helicase [Pichia pastoris GS115]
 gi|238032364|emb|CAY70387.1| DNA helicase [Pichia pastoris GS115]
          Length = 1103

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 29/205 (14%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANAAP 70
            Q   +   N  SK  K        V   E  +   +        KI AL   ++  +   
Sbjct: 886  QENEVLCPNCRSKISKLRLFKTHLVEDSERGYSVTLFHPYGSSSKINALLRHLKTIHETK 945

Query: 71   I--IVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTIQEWNE----GKIPLL 112
               +V   F+S L  +Q              F    +L +    ++E+N+    G I +L
Sbjct: 946  EHVVVISQFSSFLDLIQAELSKYKKEFKVMKFDGQLSLSERQVVLKEFNDNPENGGINVL 1005

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL    +       WW        +E   + R  + G  + V V   I 
Sbjct: 1006 LLSLKAGGVGLNLTN-ASRAFMMDPWWSPS-----VEAQAIDRLHRIGQSKNVNVVRFIM 1059

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
            + +I+E +L+    K  + + + + 
Sbjct: 1060 EGSIEEKMLKVQERKKQLGEAVGDD 1084


>gi|289622673|emb|CBI50942.1| unnamed protein product [Sordaria macrospora]
          Length = 1217

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPC 99
              KI  L  I+  +A     IV   F S L  ++          K               
Sbjct: 981  SSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMPNDAREA 1040

Query: 100  TIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++     + +  +L         GLNL      ++    +W+       +E   + R  +
Sbjct: 1041 SLHSLRKDPRTRVLLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAIDRVHR 1094

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  V VY L  + T++  +L+    K  +    +  
Sbjct: 1095 LTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQAAVEG 1133


>gi|330906609|ref|XP_003295534.1| hypothetical protein PTT_01525 [Pyrenophora teres f. teres 0-1]
 gi|311333094|gb|EFQ96362.1| hypothetical protein PTT_01525 [Pyrenophora teres f. teres 0-1]
          Length = 1027

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 55/177 (31%), Gaps = 21/177 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
            Y        +   KI     ++ +          ++   F S L  ++    +     + 
Sbjct: 842  YMRRLDKTYIPSAKINRTIELLNEIRANDPTEKTLIFSQFTSLLDLVEVPLWREGIKYQR 901

Query: 98   -----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                              +     ++     +   GLNL    + ++    +W+      
Sbjct: 902  YDGSMKMDDRAEAVNLFMDNPNQNVMLVSIKAGNAGLNLWK-ASQVIILDPFWNP----- 955

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             IE   V R  +    R V+V+ ++  +T+++ ++     K  I    L+    + +
Sbjct: 956  FIEEQAVDRAHRMPQTREVYVHRILVPDTVEDRIVMLQDKKREIIGDALDENASKRL 1012



 Score = 38.6 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 3/53 (5%), Positives = 10/53 (18%), Gaps = 7/53 (13%)

Query: 3   QYHKFQRELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHW 48
            Y   + +    +        G      +     ++  Q         +    
Sbjct: 576 IYKALEDKSQIFINKYLERGRGSTTNYASVLVVLLRLRQACCHPHLIKDLSQP 628


>gi|183979217|dbj|BAG30708.1| decrease in DNA methylation 1b [Brassica rapa]
          Length = 766

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGA---------VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYH 76
             ++  +  N            Y+            K + LE ++ +       ++V   
Sbjct: 488 LVIQLRKNCNHPDLLAGQIDGSYFYPPIEDIVGQCGKFRLLERLLVRLFAKNHRVLVFTQ 547

Query: 77  FNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLN 124
           +   L  +   F               LD+    I E+N+      +      + G G+N
Sbjct: 548 WTKILDIMDYYFSEKGFEVCRIDGNVKLDERRRQIDEFNDEKSSCRIFLLSTRAGGLGIN 607

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  + V VY L    +I+  VL+R 
Sbjct: 608 LTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRVLKRA 661

Query: 185 RTKSTIQDLLLN 196
            +K  ++ +++ 
Sbjct: 662 YSKLKLEHVVIG 673


>gi|125775660|ref|XP_001359021.1| GA15429 [Drosophila pseudoobscura pseudoobscura]
 gi|54638762|gb|EAL28164.1| GA15429 [Drosophila pseudoobscura pseudoobscura]
          Length = 1058

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
               K+  +  I++    K N    I+   + S L  L+                  +   
Sbjct: 885  PSTKMLKVMEILKSSILKDNNDKAIIVSQWTSVLEILRDHLENDKLSTLSLNGSIPVKNR 944

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+      +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 945  QEIVNQFNDQHNQKRILLLSLTAGGVGLNL-VGANHLLLLDLHWNPQL-----EAQAQDR 998

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G K+ V +Y  +  +T+++ +L   + K  + + +L
Sbjct: 999  IYRVGQKKDVMIYKFVCLDTVEQRILALQQHKLELANGVL 1038



 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 4/51 (7%), Positives = 14/51 (27%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y   ++        + +++       ++  Q+       D     +E    
Sbjct: 756 YKLHEKFAKMAGNKKEVKSHEILVLLLRLRQICCHPGLIDSMLEGEEAKSM 806


>gi|315917068|ref|ZP_07913308.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690943|gb|EFS27778.1| SWF/SNF family helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 1143

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 2    KQYHKFQRELY----CDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            K Y + +   Y      ++ + +            +  Q+ +       E     +   K
Sbjct: 923  KFYEERRNYYYNMIHASIREKGLGKAQFFILQALNELRQITS-----CPEVKNSYISSSK 977

Query: 56   IKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWN 105
             + L   I +   N   ++V  ++         S   R         +       + ++ 
Sbjct: 978  KEMLIEQIVEAVENDHKVLVFTNYIGSIENICKSLEEREIAYLSMTGSTKDRQQLVNKFQ 1037

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +  +  WW+     + +E   + R  + G  R 
Sbjct: 1038 KNEKYKVFVMTLKTGGVGLNLTA-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDRT 1091

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VF Y LI ++TI+E +LQ    KS + D +++   
Sbjct: 1092 VFSYKLILKDTIEEKILQLQELKSKLLDDVISEDN 1126


>gi|196234384|ref|ZP_03133212.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
 gi|196221576|gb|EDY16118.1| Non-specific serine/threonine protein kinase [Chthoniobacter flavus
           Ellin428]
          Length = 897

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ- 90
           C   A+     D+ +       E++  L   +       IIV   + + L  ++      
Sbjct: 599 CRMAADSTFLVDKTEPGYSSKLERLGELLAALCAEPERKIIVFSEWTTMLDLIETQLKNL 658

Query: 91  ---------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    + E+ +  +  +      +   GLNLQ   + ++   L W+
Sbjct: 659 RAKFVRLDGSVPQARRKQLVAEFQDNPQCRVFL-TTNAGSTGLNLQA-ADTVINVDLPWN 716

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               +Q I R       + G KR V VY  + + TI+E +L  L  K  +   +L+
Sbjct: 717 PALLEQRIAR-----AHRMGQKRKVHVYLFVTEKTIEENLLATLGAKHELAGAVLD 767


>gi|268574810|ref|XP_002642384.1| Hypothetical protein CBG18388 [Caenorhabditis briggsae]
          Length = 1016

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 31  KCLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
           K  QL        +    +E+  +  K + L+ ++ +       +++   F S L  L+ 
Sbjct: 766 KIHQLCERFRCTSKFLLNEELALNSGKCEQLDKMLPEIQNKGDKVLIFSQFTSMLDILEV 825

Query: 87  AFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    K              I E+N    + +      + G G+NL    N ++  
Sbjct: 826 YLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTKAGGLGINLTS-ANHIIIH 884

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G ++ V V  L+++ T++  +L   + K  ++  + 
Sbjct: 885 DIDFNP-----YNDKQAEDRCHRMGQEKPVHVTRLVSKCTVEIGMLALAKKKLQLEKQVT 939

Query: 196 NALKKE 201
           + +K +
Sbjct: 940 DGVKGQ 945


>gi|254582288|ref|XP_002497129.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
 gi|238940021|emb|CAR28196.1| ZYRO0D16082p [Zygosaccharomyces rouxii]
          Length = 810

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 73/210 (34%), Gaps = 28/210 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------HDEKIKALE 60
            +LY +   +        +  ++  Q+ +    +       E            K++ L+
Sbjct: 508 DKLYVEHLSKEFTNIKLQNMMMQLRQVVDSTFLFYFPFIHPEDLTLEALLNSSGKLQVLQ 567

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGK 108
            ++         +++   F   L  L+                   D     ++++++  
Sbjct: 568 KLVLPLVEKGHKVLIFSQFIQMLDLLEDWCELNSLNALRIDGSVNNDTRKEQLEKFDKKS 627

Query: 109 IP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    + +V F   W+ +     ++   + R  + G    V 
Sbjct: 628 SKEQVFLLSTRAAGLGINL-AAADTVVLFDSDWNPQ-----VDLQAMDRCHRIGQTNPVI 681

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           VY L   NT++ ++L R  +K  ++ L++ 
Sbjct: 682 VYRLCCDNTVEHVILTRATSKRRLEKLVIQ 711


>gi|315054981|ref|XP_003176865.1| chromodomain-helicase-DNA-binding protein 5 [Arthroderma gypseum CBS
            118893]
 gi|311338711|gb|EFQ97913.1| chromodomain-helicase-DNA-binding protein 5 [Arthroderma gypseum CBS
            118893]
          Length = 1513

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIEKANAAPIIVAY 75
             ++  +       Y +    + V+   +                 +   +     +++  
Sbjct: 954  LMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASSKLQLLELLLPKLQERGHRVLIFS 1013

Query: 76   HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F   L  ++                 T  K    I  +N              + G G+
Sbjct: 1014 QFLDFLDIVEDFLDGLGLTHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLSTRAGGVGI 1073

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ + + +E ++Q 
Sbjct: 1074 NL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMTRGSAEEKIMQI 1127

Query: 184  LRTKSTIQDLLLNAL 198
             + K  +  +L+  +
Sbjct: 1128 GKKKMALDHVLIERM 1142


>gi|309364522|emb|CAP24766.2| hypothetical protein CBG_03965 [Caenorhabditis briggsae AF16]
          Length = 1109

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K+KA   I+ +       ++V   + S L  ++K   +                    
Sbjct: 937  SCKMKATLEILNEATEKNEKVVVVSQWTSVLDLIKKHVKENGIRYTSITGQVLVKDRQER 996

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 997  VDSFNQEKGGANVMLLSLTAGGVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YR 1050

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ VF++ L+  NTI++ V +  ++K  +   +L+      ++
Sbjct: 1051 MGQKKPVFIHRLVTNNTIEQRVAELQKSKLQLASSILDGTATRKMN 1096


>gi|66805677|ref|XP_636560.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60464943|gb|EAL63058.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 1332

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 45/232 (19%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK----- 55
           ++ Y  F      +++    +  +  +      ++ +      EE     + + K     
Sbjct: 733 IELYRTFLES--DEVKDALNKTQSPLAALTVLKKICDHPHLLREEMKMISLDEMKDLLSK 790

Query: 56  -------------------IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                              +    +     +   +++       L   +           
Sbjct: 791 VGGSSRSINSLVNNSGKFQLLLKLLPNLHQDGHRVLMFSQSVKMLEDFEILLDHLGLTYL 850

Query: 91  -----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +  K    I  +N +               GLNL    + ++     W+    
Sbjct: 851 RIDGSISSTKKRQEIIDLYNTDMSYFAFIMTIQVGALGLNLTS-ADRVLILDPSWN---- 905

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              I+   V R  + G K+ V VY L++  TI+E + ++   K ++   +LN
Sbjct: 906 --TIDNQAVDRAYRIGQKKDVVVYRLMSCGTIEEKIYRKQVFKGSLMKTMLN 955


>gi|225468600|ref|XP_002264131.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1147

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              ++++N   ++ ++    
Sbjct: 992  GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 1051

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+
Sbjct: 1052 KAASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTV 1105

Query: 177  DELVLQRLRTKSTIQDLLLNALK 199
            ++ +L   + K  +        +
Sbjct: 1106 EDRILALQQKKREMVASAFGEDE 1128


>gi|50308261|ref|XP_454131.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643266|emb|CAG99218.1| KLLA0E04159p [Kluyveromyces lactis]
          Length = 826

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 69/194 (35%), Gaps = 28/194 (14%)

Query: 28  KTVKCLQLANGAVYYDEEK--------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF 77
             ++  Q+ N    +                    K++ L+ ++ +       +++   F
Sbjct: 538 MMIQLRQIVNSTYLFYFPLLEPTDLTLENLLKTSGKLQVLQKLVPELIKKKHKVLIFSQF 597

Query: 78  NSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNL 125
            S L  ++                   +     I+E+++      L      + G G+NL
Sbjct: 598 VSMLDLIEDWSELNNFISCRIDGSMQNNSRKEQIEEFSKKGSKANLFLLSTRAAGLGINL 657

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +     ++   + R  + G  + V VY L   NTI+ +++ R  
Sbjct: 658 TA-ADSVIIFDSDWNPQ-----VDLQAMDRAHRIGQTKPVIVYRLYCDNTIENVIMTRAV 711

Query: 186 TKSTIQDLLLNALK 199
            K  ++ L++   K
Sbjct: 712 NKRKLEKLVIQMGK 725


>gi|154316345|ref|XP_001557494.1| hypothetical protein BC1G_03758 [Botryotinia fuckeliana B05.10]
 gi|150846544|gb|EDN21737.1| hypothetical protein BC1G_03758 [Botryotinia fuckeliana B05.10]
          Length = 917

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 45/215 (20%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV------------------------ 61
                   ++ N      ++       +  +  L                          
Sbjct: 548 LQLITMLKKVCNAPSLLVKKSDTDTPSNSNVAQLLESIPPEILKKNPVVASSKFRVLNRM 607

Query: 62  --IIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN---E 106
              + K+    I++  ++ S L  L                     K    +  +N    
Sbjct: 608 LMRLSKSTTEKIVIVSNYTSTLDLLVSHLSSLNLPFLRLDGSTPQAKRQDLVNTFNKTPA 667

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            K         S G G+NL  G + LV F + W+        +   + R  + G KR V 
Sbjct: 668 SKYFAFLLSAKSGGAGINL-IGASRLVLFDVDWNPAT-----DLQAMARIHRDGQKRPVK 721

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +Y  +    +DE + QR  TK  + D +++  K E
Sbjct: 722 IYRFLMSGGMDEKIYQRQVTKMGLADSVMDGKKNE 756


>gi|303277253|ref|XP_003057920.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460577|gb|EEH57871.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 945

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 97  DPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+GK   +      + G GLNL  G N LV F   W+        +   + R
Sbjct: 703 RGAIVNKFNDGKGGDVFLLSCKAGGVGLNL-VGANRLVLFDSDWNPAN-----DLQALAR 756

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
             + G KR V +Y L++  T++E V QR   K  + D + + ++ K 
Sbjct: 757 VWREGQKRPVTIYRLVSTGTVEERVFQRQILKGDVADAMGMASVNKR 803


>gi|121710388|ref|XP_001272810.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           clavatus NRRL 1]
 gi|119400960|gb|EAW11384.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           clavatus NRRL 1]
          Length = 1011

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              +
Sbjct: 609 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMS 668

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + ++N + K  +      S G GLN+    N +V     W+        +   
Sbjct: 669 YEERTKVVDDFNSDPKQFVFLISTRSGGVGLNITS-ANKVVVVDPNWNPSH-----DLQA 722

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 723 QDRAYRIGQSRNVEVFRLISAGTIEEIVYARQIYKQQQAN 762


>gi|66357154|ref|XP_625755.1| chromodomain-helicase-DNA-binding'multidomain chromatin protein with
            the following architecture: chromo-bromo-chromo-SNF2
            ATpase' [Cryptosporidium parvum Iowa II]
 gi|46226948|gb|EAK87914.1| chromodomain-helicase-DNA-binding'multidomain chromatin protein with
            the following architecture: chromo-bromo-chromo-SNF2
            ATpase' [Cryptosporidium parvum Iowa II]
          Length = 2270

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 34/193 (17%)

Query: 32   CLQLANGAVYY--------------DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
              +  N                   +E          K+  +  ++ K  A    +++  
Sbjct: 1661 LRKCCNHPFQVVGVEEREVALCKTSEERYKKMIELSGKMVLMGKLLPKLKAEGHRVLIFS 1720

Query: 76   HFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
             F   L  L++                        I  +N       +      + G G+
Sbjct: 1721 QFIQTLTLLEELVEHHGWGYERLDGSIRGTDRNAAITRFNAEDSDKFVFLLSTRAGGLGI 1780

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++ F   W+ +      +     R  + G  R V VY LI   T +  + +R
Sbjct: 1781 NLTS-ADTVIIFDSDWNPQN-----DVQACARAHRIGQTRDVKVYRLITARTYEAEMFER 1834

Query: 184  LRTKSTIQDLLLN 196
               K  +   + +
Sbjct: 1835 AGRKLGLNTAVFH 1847


>gi|326531768|dbj|BAJ97888.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1270

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPAS 118
              IV   +   L  L+          +              + ++    ++ ++     +
Sbjct: 1117 KAIVFSQWTRMLDLLEVHLQASHVTYRRLDGTMSVAAREKAVNDFKTVPEVSVMIMSLKA 1176

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 1177 ASLGLNMVAACH-VLMLDLWWNPTT-----EDQAVDRAHRIGQTRPVTVSRLTVKDTVED 1230

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L     K  +        K
Sbjct: 1231 RILALQEKKREMVASAFGEDK 1251


>gi|328861412|gb|EGG10515.1| hypothetical protein MELLADRAFT_47048 [Melampsora larici-populina
           98AG31]
          Length = 676

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------ 90
            +     K+ + ++  KI+ L+ ++   K+  + I++   F   LA L+K          
Sbjct: 464 HLNKFALKNEEWMNAGKIEKLKELVIRLKSKGSRILIFSQFTQMLAILEKVMECIGVKFL 523

Query: 91  ----GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++      + E+ N+  I +      + G GLNL    + +V F   ++     
Sbjct: 524 ILTGSTSVGDRQPLVDEFTNDESITVFLLSTKAGGLGLNLMA-ADTVVIFDQDFNP---- 578

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +R    R  + G KR V V   + ++TI+E +LQ  +TK  +   +
Sbjct: 579 -HNDRQAEDRAYRLGQKRDVHVIKFVTKHTIEEDILQLAQTKIALDTSV 626


>gi|268565237|ref|XP_002639379.1| Hypothetical protein CBG03965 [Caenorhabditis briggsae]
          Length = 1094

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K+KA   I+ +       ++V   + S L  ++K   +                    
Sbjct: 922  SCKMKATLEILNEATEKNEKVVVVSQWTSVLDLIKKHVKENGIRYTSITGQVLVKDRQER 981

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 982  VDSFNQEKGGANVMLLSLTAGGVGLNL-CGGNHLIMVDLHWNPALEQQAFDRI-----YR 1035

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ VF++ L+  NTI++ V +  ++K  +   +L+      ++
Sbjct: 1036 MGQKKPVFIHRLVTNNTIEQRVAELQKSKLQLASSILDGTATRKMN 1081


>gi|207341053|gb|EDZ69217.1| YOR191Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1205

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 23/216 (10%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCL-QLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y +   + + +            S+  K   Q  N  V   E        ++ I+ ++
Sbjct: 984  KLYDQVINQGFTE----EDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCIQVIQ 1039

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEW-NEGK 108
             + +++    II+   F +    L+             +       +    I E+  + +
Sbjct: 1040 RVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPE 1099

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +L     +   GL L    N +V    +W+       +E     R  +    + V V+
Sbjct: 1100 KRILLISMKAGNSGLTLT-CANHVVIVDPFWNP-----YVEEQAQDRCYRISQTKKVQVH 1153

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             L  ++++++ + +  + K  + D  ++  K + ++
Sbjct: 1154 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVN 1189


>gi|224090059|ref|XP_002308925.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222854901|gb|EEE92448.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1483

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 73   VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNI 131
            +   + +             T+      ++++     I +      + G G+NL    + 
Sbjct: 1192 MLMDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTA-ADT 1250

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   W+        +   + R  + G  + V VY LI + T++E +LQR   K T+Q
Sbjct: 1251 VIFYESDWNPTL-----DLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKHTVQ 1305

Query: 192  DLLL 195
             L++
Sbjct: 1306 QLVM 1309


>gi|219128189|ref|XP_002184301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404102|gb|EEC44050.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 975

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 39/228 (17%)

Query: 5   HKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYY----------DEEKHWKEVH 52
                +L   + G +      ++        ++                  E+    +  
Sbjct: 615 RALYHQLTARISGGSCTDGGTDALKTLTTLRKICTHPSICNDDNVKPWNRPEKGPCLKYD 674

Query: 53  ---DEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQK-----------AFPQGRTL 94
                K+  L+ +++          I+V  ++ S L  ++                G   
Sbjct: 675 IALSGKMTVLDKLLQSIRENAPNDKIVVVSNYTSALTIVESLILGPRKLGFLRLDGGTES 734

Query: 95  DKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +    ++ +N      +  L     + G GLNL  G N L+     W+        +  
Sbjct: 735 SQRQPLVESFNRSHPEKVFCLLLSSKAGGCGLNL-VGANRLLLLDPDWNPAS-----DVQ 788

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + R  + G  +  ++Y L    T++E++LQR   K  +    ++  K
Sbjct: 789 AMGRVYRQGQTKPCWIYRLFTTGTVEEVILQRQLQKGNLTAWTVDGGK 836


>gi|255561188|ref|XP_002521606.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus
           communis]
 gi|223539284|gb|EEF40877.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus
           communis]
          Length = 788

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 74/215 (34%), Gaps = 31/215 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----------VYYDEEKHWKEVHD 53
              ++ L   +        N  +  ++  +  N              Y   E+  ++   
Sbjct: 486 KTLEKHLREKIGHGMKGKLN--NLMIQLRKNCNHPDLLESAFDGSNFYPPVEQIVEQCGK 543

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQE 103
            ++    +    A    +++   +   L  +   F +             LD+    I+E
Sbjct: 544 FRLLERLLNRLFALKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIEE 603

Query: 104 WN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N  +    +      + G G+NL    +  + +   W+ +     ++   + R  + G 
Sbjct: 604 FNNVDSNYRIFLLSTRAGGLGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQ 657

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V VY L    +++  +L+R  +K  ++ +++ 
Sbjct: 658 TKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG 692


>gi|9294624|dbj|BAB02963.1| DNA repair protein RAD54-like [Arabidopsis thaliana]
          Length = 959

 Score = 85.2 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 58/234 (24%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------------ 44
           +    D   +        +      +L N      +                        
Sbjct: 460 KRALADNAKQT----KVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMF 515

Query: 45  ----------EKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
                     +  W E+  +      ++  + +     I++  ++   L    +   +  
Sbjct: 516 SGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERR 575

Query: 91  --------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     T+ K    +   N+             + G GLNL  G N LV F   W+
Sbjct: 576 YPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWN 634

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                   ++    R  + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 635 PAN-----DKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|47229701|emb|CAG06897.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1219

 Score = 85.2 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                   +  +    I ++N+ +     +      +   G+NL  G N +V F   W+ 
Sbjct: 690 YYRLDGSTSASERERLINQFNDPENNTAWIFLLSTRAGCLGVNL-IGANRVVVFDASWNP 748

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  +   V R  + G ++  F+Y L+   T+++ +  R  +K  + D +++ L 
Sbjct: 749 -----CHDAQAVCRVYRYGQRKPCFIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDLN 801


>gi|312381992|gb|EFR27591.1| hypothetical protein AND_05624 [Anopheles darlingi]
          Length = 1508

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    I E+N    + L      +   G+NL  G N +V F   W
Sbjct: 215 RNISYFRLDGSTVAQEREKLINEFNSNPNVHLFLVSTRAGSLGINL-VGANRVVVFDASW 273

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        +   V R  + G K+  FVY L+  N +++ +  R   K  + D +++   
Sbjct: 274 NP-----CHDTQAVCRVYRYGQKKPCFVYRLVMDNCLEKKIYDRQINKQGMSDRIVDECN 328

Query: 200 KE 201
            +
Sbjct: 329 PD 330


>gi|50557192|ref|XP_506004.1| YALI0F28831p [Yarrowia lipolytica]
 gi|49651874|emb|CAG78816.1| YALI0F28831p [Yarrowia lipolytica]
          Length = 920

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 21/205 (10%)

Query: 5   HKFQRELYCDLQGENI-EAFNSAS--KTVKC-LQLANGAVYYDEEKHWKEVHDEKIKALE 60
              + E Y D   + I E     S  +  +  LQ  +   Y  EE+ W +    K  A  
Sbjct: 697 EIMKEERYYDANRDYIREDMEVMSDFELNRLALQFPSIEKYALEEEPWMDAAKVKKLAEM 756

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI 109
           + I K N   +++   F   L  L+               Q     +     + + E  I
Sbjct: 757 LPIMKENNDRVLIFSQFTQCLDILESVLNTLGIAFLRLDGQTPVEARQDMIDKYYEETDI 816

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+NL    N ++ F L ++  +     ++    R  + G  R V V  
Sbjct: 817 TVFLLSTKAGGFGINL-ACANTVIIFDLSFNPHD-----DKQAEDRAHRVGQTRDVRVIR 870

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLL 194
           L+ + T++E +L+   TK  +   +
Sbjct: 871 LVCKGTVEEKILELNNTKLALDKSV 895


>gi|50293969|ref|XP_449396.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690652|sp|Q6FK48|SWR1_CANGA RecName: Full=Helicase SWR1
 gi|49528710|emb|CAG62372.1| unnamed protein product [Candida glabrata]
          Length = 1450

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 13/194 (6%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y +  +    +   +       A      LQ   G +        +            +I
Sbjct: 1146 YEELVQ--LDNPFHQVQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDGGH----RALI 1199

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
                   + +   F +    L         ++      + +N + KI +      S G G
Sbjct: 1200 FTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLG 1259

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL  G + ++F+   W+       +++    R  + G  R V +Y  ++++TI+  +L+
Sbjct: 1260 INLT-GADTVIFYDSDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILK 1313

Query: 183  RLRTKSTIQDLLLN 196
            +   K  + D+++ 
Sbjct: 1314 KANQKRQLDDVIIQ 1327


>gi|164656625|ref|XP_001729440.1| hypothetical protein MGL_3475 [Malassezia globosa CBS 7966]
 gi|159103331|gb|EDP42226.1| hypothetical protein MGL_3475 [Malassezia globosa CBS 7966]
          Length = 1687

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 59/240 (24%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKIKALEV 61
             +   +   K     +LAN      +     +                  H  K++AL  
Sbjct: 1387 KVPQQHVFQKLQYLRKLANHPSLVLDPAVPAQKKLLDQVNASRGTLAGLTHAPKLQALRQ 1446

Query: 62   IIEKA----------------------NAAPIIVAYHFNSDLARLQKAFPQ--------- 90
            ++                         +   +++       L  +++   +         
Sbjct: 1447 LLLDCGIGVESQNNDAALIGADTGASVSQHRVLIFCQMKQMLDVIERDLFRALMPSVTYL 1506

Query: 91   ----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  + D+    +Q +N +  I +L    +  G GL L  G + ++F    W+     
Sbjct: 1507 RLDGSVSSDRRHGIVQSFNADPSIDILLLTTSVGGLGLTLT-GADTVIFVEHDWNP---- 1561

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             M +   + R  + G K+ V VY LI ++T++  ++   + K  I + ++    K   ++
Sbjct: 1562 -MKDLQAMDRAHRLGQKKVVNVYRLITRDTLEANIMGLQQFKMNIANSVVTQQNKSMENM 1620


>gi|156544309|ref|XP_001607162.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 2220

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 68/232 (29%), Gaps = 43/232 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDE------------ 44
             Y   Q +      G               +  V+  +L N    +              
Sbjct: 1649 LYKHMQSKGVLLTDGSEKGKRGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCEYLGIQ 1708

Query: 45   -----EKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ------- 90
                           K + L+ I+ K       +++       +  ++            
Sbjct: 1709 GSGVITGPLLYRASGKFELLDRILPKLKATGHRVLLFCQMTQLMTIMEDYLQWRGFLYLR 1768

Query: 91   ---GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +     ++++N+             + G GLNLQ   + ++ F   W+  +  
Sbjct: 1769 LDGTTKAEDRGDLLKKFNDPGSEFFLFILSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-- 1825

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G K  V V  L+  N+++E +L   R K  + + ++ A
Sbjct: 1826 ---DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1874


>gi|307776522|pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-Atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 38/222 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------------- 50
             +       G     F+  +   +  + +N    +D  +                    
Sbjct: 491 LTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550

Query: 51  --VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
             +   K+  L+ ++   K +   +++       L  L                     +
Sbjct: 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQ 610

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              +I  +N       +      + G G+NL    + +V F   W+ +      +   + 
Sbjct: 611 RRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQAMA 664

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 665 RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 706


>gi|154305729|ref|XP_001553266.1| hypothetical protein BC1G_07679 [Botryotinia fuckeliana B05.10]
 gi|150853198|gb|EDN28390.1| hypothetical protein BC1G_07679 [Botryotinia fuckeliana B05.10]
          Length = 537

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 7/175 (4%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
            FN  S   +   + N  +          V           +        +    F S  
Sbjct: 348 IFNGLSLLNRLRLICNHGILQLTSTTDHVVSQGIEVVACCSMCGDYLQEEVFGGPFPS-G 406

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R  +         ++       NE  + ++       G GL+L   G+        W+ 
Sbjct: 407 IRYTRIDGTMPLSRRNEALGAFKNEDTVRVILVSVTCGGAGLDLTT-GSRAYLLEPHWNP 465

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                MIE   + R  +   KR V     +  N+ +E +++  + K  + D   +
Sbjct: 466 -----MIEEQALCRVHRISQKRKVTTIRYLMHNSFEEQIVELQKRKKMLADATFS 515


>gi|297847386|ref|XP_002891574.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337416|gb|EFH67833.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 980

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
             I+   +   L  ++ +  +     +                +  N+  + ++     +
Sbjct: 827 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKA 886

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   LWW+        E   + R  + G  R V V  +  ++T+++
Sbjct: 887 GNLGLNMIAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRITIKDTVED 940

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  +       
Sbjct: 941 RILSLQEEKRKMVASAFGE 959


>gi|146420558|ref|XP_001486234.1| hypothetical protein PGUG_01905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 761

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 71/189 (37%), Gaps = 29/189 (15%)

Query: 31  KCLQLANGAVYYDEEKHWKE-----------VHDEKIKALEVIIEKA-NAAPIIVAYHFN 78
           +   + N    + E     +            +  KI+ L+ +I +      +++   F 
Sbjct: 475 QLRSICNSPYTFYEPFPLNDSKTSIFMEVFYKNSAKIQVLDQLINELLPDHKLLIFSQFT 534

Query: 79  SDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
             L  L                  + +     I ++N +    +      + G G+NL  
Sbjct: 535 KMLDLLHDWLDFKNIGFCRLDGSTSHEDRDTQIDQFNTDKSKKVFLLSTRAGGLGINLTA 594

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +V F   W+ +     ++   + R  + G K+ V +Y  + +N+++E+++ +  +K
Sbjct: 595 -ADTVVIFDNDWNPQ-----VDLQAIDRVHRIGQKKPVKIYRFLIKNSVEEILISKSYSK 648

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 649 RFLEKLVIQ 657


>gi|47207122|emb|CAF91371.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1198

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  ++ ++   KA    +++       L  L+    Q R L +              I
Sbjct: 9   GKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAI 68

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +++      +      + G G+NL    +  + F   W+ +      +     R  + 
Sbjct: 69  DRFSKPDSERFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-----DLQAQARCHRI 122

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G  +AV VY LI +N+ +  +  R   K  +   +L ++      +
Sbjct: 123 GQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSL 168


>gi|134108572|ref|XP_777237.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259922|gb|EAL22590.1| hypothetical protein CNBB4670 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1399

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 21/151 (13%)

Query: 62   IIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK--- 108
            IIE+  +  IIV   F   +                +      D+   TI+++N      
Sbjct: 1229 IIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKDFNRPMEED 1288

Query: 109  --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                 L       G GLNL    N ++   L W+        E   V R  + G  R V 
Sbjct: 1289 KSPRCLLMSLKCGGVGLNL-CIANHVICLDLAWNAAT-----ENQAVDRAHRIGQTREVV 1342

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ L+ +NTID+ +++  + K  + D  +  
Sbjct: 1343 VHRLVVENTIDQRLMELQQQKQALSDGAMGE 1373


>gi|168012162|ref|XP_001758771.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162689908|gb|EDQ76277.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1211

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 55/238 (23%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           K Y  F      +            S      ++ +  +                     
Sbjct: 659 KLYRAFLNSNTAE--ETLSTGTKVLSALTVMKKICDHPMLLTKRAANDIAEGMEGYLDAE 716

Query: 42  --------------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
                           ++         KI  L  +++   A     ++       L  +Q
Sbjct: 717 DIQAAEAMTHSLAGMVQDDEDMSATSCKIDFLMALLDNLVAEGHRTLIFAQTRKMLNIIQ 776

Query: 86  KAFPQGRTLDKDPC-----------TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
               +   + +                +  ++ +IPL        G GL L  G + +V 
Sbjct: 777 DEILERGWIFRRIDGTIKAADRELCVQEFQSDDEIPLFLLTSQVGGLGLTLT-GADRVVI 835

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               W+     Q ++R       + G K  V +Y L+   TI+E + ++   K  +  
Sbjct: 836 VDPAWNPSTDNQSVDR-----AYRIGQKNDVVIYRLMTCGTIEEKIYRKQVFKGHLMK 888


>gi|301119013|ref|XP_002907234.1| chromatin-remodeling complex ATPase chain, putative [Phytophthora
           infestans T30-4]
 gi|262105746|gb|EEY63798.1| chromatin-remodeling complex ATPase chain, putative [Phytophthora
           infestans T30-4]
          Length = 1385

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 75/221 (33%), Gaps = 30/221 (13%)

Query: 3   QYHKFQ-RELYCDLQGENIEAFNSASKT-VKCLQLANGAVYY--------DEEKHWKEVH 52
            Y     R++   + G    + ++     ++  +       +        D        +
Sbjct: 521 LYKSLLLRDMNTIMGGTGGVSKSALQNIVMQLRKCCGHPYLFEGQEDRTLDPLGEHVVEN 580

Query: 53  DEKI--KALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCT 100
             K+      +   K   + +++             F               + +    +
Sbjct: 581 CGKMVLLDKLLTKLKQRGSRVLIFTQMTRVLDIMEDFCRMRLYDYCRIDGQTSYEDRESS 640

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I E+N+      L      + G G+NL Y  ++++ +   W+ +      +     R  +
Sbjct: 641 IDEYNKPNSSKFLFLLSTRAGGLGINL-YTADVVILYDSDWNPQA-----DLQAQDRAHR 694

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K+ V VY L+  ++++E +++R + K  +  +++   +
Sbjct: 695 IGQKKEVNVYRLVTTDSVEEKIIERAQQKLKLDAMVVQQGR 735


>gi|213408989|ref|XP_002175265.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
 gi|212003312|gb|EEB08972.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
          Length = 850

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             I+   F S L  L+               Q +  D++    +   + ++ +L      
Sbjct: 691 KTIIFSQFTSMLDLLEPHLRNAGIGFVRYDGQMKNKDREDALNKLRTKSEVQVLLCSLKC 750

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLNL    + ++   +WW+    +Q I+R+      + G K  V VY +   +T++E
Sbjct: 751 GALGLNLT-CASRVILLDVWWNPAVEEQAIDRV-----HRIGQKHDVDVYKITIADTVEE 804

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++     K  + D  + 
Sbjct: 805 RIVALQDKKRELADGAIG 822


>gi|70986552|ref|XP_748767.1| SWI/SNF family DNA-dependent ATPase [Aspergillus fumigatus Af293]
 gi|66846397|gb|EAL86729.1| SWI/SNF family DNA-dependent ATPase, putative [Aspergillus
           fumigatus Af293]
          Length = 707

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLA----------RLQKA 87
           Y      K V+  KI+    II    ++     +IV  HF + L              + 
Sbjct: 521 YGHALPRKWVNSSKIEKAAEIIKAIRDQGTGDKVIVFSHFTALLDLIEVPIARSGWKYRR 580

Query: 88  FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +    T  +    I  + ++    +L     +   GLNL    + ++     W+      
Sbjct: 581 YDGRMTPAERGSAISSFASQPDCLVLLVSLKAGNAGLNLT-CASNVIIMEPSWNP----- 634

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            IE   + R  + G +R V VY L+  +TI+  +L+    K  +
Sbjct: 635 YIEEQAIGRVHRIGQERHVRVYRLLVADTIEIRILELQEKKRKL 678


>gi|255930267|ref|XP_002556693.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581306|emb|CAP79077.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 978

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 44/221 (19%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDE----------------------EKHWKEVH 52
            Q     A ++        +L+N                              +H     
Sbjct: 558 FQSAMGNAESALQLITILKKLSNSPSLLTAKNNDDTPNETMTALIASIPQPLHRHLSPSS 617

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
             KI+ L+ +++         I++  ++ S L+                       K   
Sbjct: 618 SAKIRVLDQLLDTMRSKTDEKIVLVSNYTSTLSLLATLLTSLGLPYLRLDGSTPAQKRQG 677

Query: 100 TIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            + ++N               + G GLNL  G + L+ F + W+        +   + R 
Sbjct: 678 LVDDFNRLPASSCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARI 731

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G KR   +Y ++ + +++E + QR  TK  + D ++  
Sbjct: 732 HRDGQKRPCRIYRILLKGSLEEKIWQRQVTKLGLADSVMQE 772


>gi|194756856|ref|XP_001960686.1| GF13478 [Drosophila ananassae]
 gi|190621984|gb|EDV37508.1| GF13478 [Drosophila ananassae]
          Length = 1575

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
            N+  + + +    +   L        +  +    + E+N    + L      +   G+NL
Sbjct: 899  NSPKMEIFFCILKESMHLGDRLDGSTSSQERERLVNEFNANTSVKLFLISTRAGSLGINL 958

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              G N ++ F   W+        +   V R  + G  +  FVY ++    +++ +  R  
Sbjct: 959  T-GANRVIIFDASWNP-----CHDTQAVYRIYRYGQTKPCFVYRIVMDKCLEKKIYDRQI 1012

Query: 186  TKSTIQDLLLNALKKE 201
             K  + D +++    E
Sbjct: 1013 KKQGMSDRIVDECNPE 1028


>gi|255956043|ref|XP_002568774.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590485|emb|CAP96675.1| Pc21g17780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1331

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR-TLDK 96
                        E+ ++ I   + I+  +++ P +       +  + + A  +G     K
Sbjct: 1080 DPSLSSRVMILNEIINQAIAVGDKILVFSSSIPTLNYLAQVMEKTQRKYALLEGTIPTTK 1139

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++ +N +    +      + G GLN+Q   N +V F   ++        E   + R
Sbjct: 1140 RLELVRGFNNDPSTYVFLISTKAGGVGLNIQT-ANRVVIFDFEFNPT-----WEEQAIGR 1193

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ VFVY L+A  T++E +  +   KS +   LL+ 
Sbjct: 1194 AYRIGQKKKVFVYRLVAAGTVEEKIFCKATFKSQLAGRLLDD 1235


>gi|225467009|ref|XP_002262712.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
          Length = 781

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+          +              ++++N   ++ ++    
Sbjct: 626 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 685

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+
Sbjct: 686 KAASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTV 739

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           ++ +L   + K  +        +
Sbjct: 740 EDRILALQQKKREMVASAFGEDE 762


>gi|260812970|ref|XP_002601193.1| hypothetical protein BRAFLDRAFT_183803 [Branchiostoma floridae]
 gi|229286484|gb|EEN57205.1| hypothetical protein BRAFLDRAFT_183803 [Branchiostoma floridae]
          Length = 964

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 67/242 (27%), Gaps = 54/242 (22%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD----------------- 43
           K Y       +  L    +    +  +  +   +  N    +                  
Sbjct: 515 KYYKWILTRNFEALNTKGSGHHVSLLNVMMDLKKCCNHPYLFPTAAMVTLTNKEIYKHPY 574

Query: 44  ----------------EEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ 85
                            E    + +  K+  L  +++  +A    +++       L  L+
Sbjct: 575 LYPTDAMEAPRLPNHAYEGSGLKKNCGKLMVLGRMLKKLQAQGHRVLIFSQMTKMLDILE 634

Query: 86  KAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILV 133
                     +              I  +N    P  +      + G G+NL    + + 
Sbjct: 635 DFCEAEGYKYERIDGGVTGTLRQDAIDRFNAPGSPHFVFLLSTRAGGLGINL-ATADTVF 693

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +   W+        +    +R  + G    V +Y  + + +++E + Q  + K  +  L
Sbjct: 694 IYDSDWNP-----HNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKKKMMLTHL 748

Query: 194 LL 195
           ++
Sbjct: 749 VV 750


>gi|118370404|ref|XP_001018403.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89300170|gb|EAR98158.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1547

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
               K+K L+ ++ K       +++       +  L+    +               D+  
Sbjct: 1279 DSAKLKYLDALLTKLKREGHRVLIFCQMTRMIDILEDFMTRKKYKFFRLDGSCNISDRRD 1338

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +     K         + G G+ L    ++++F+   W+       ++   + R  +
Sbjct: 1339 MVNEFQTSDKTFAFLLSTRAGGLGVTLTA-ADVVIFYDNDWNPT-----MDAQAMDRAHR 1392

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             G  + V VY L+ + TI+E +L+R + K  +Q  +
Sbjct: 1393 IGQTKEVLVYRLVTKGTIEERILKRAQQKQMVQSTV 1428


>gi|297828221|ref|XP_002881993.1| hypothetical protein ARALYDRAFT_483627 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327832|gb|EFH58252.1| hypothetical protein ARALYDRAFT_483627 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 873

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 83/235 (35%), Gaps = 41/235 (17%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYD-------EEKHWKEV 51
           K Y    ++EL     L        +  +  ++  +  +    +        EE      
Sbjct: 311 KIYTSILRKELPGLLALSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQ 370

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ ++++ +     +++     S L  LQ                   ++   
Sbjct: 371 ASGKLFVLDQLLKRLHDIGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFA 430

Query: 100 TIQEWNEGKIP------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            I+ ++                 +      + G GLNL    + ++F+   W+ +     
Sbjct: 431 AIKNFSAKSERGLDSEVDASNAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ----- 484

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKE 201
           +++  + R  + G    V    L+ +++++E++L+R   K  +   ++ + ++++
Sbjct: 485 VDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEEK 539


>gi|225560949|gb|EEH09230.1| RING-13 finger domain-containing protein [Ajellomyces capsulatus
            G186AR]
          Length = 1205

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               +R+    L+     +  +  + ++ L                 V   KI+    I+ 
Sbjct: 970  KAVERKSLPQLKKNAARSVEAKREYMRYL-------------TDNWVTSAKIEKTMEILR 1016

Query: 65   KANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW 104
               +            IV   F S L               +     +   ++   ++  
Sbjct: 1017 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1076

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1077 DSQNHTIMLISLKAGNSGLNLVA-ASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1130

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V V+ ++   T+++ +L+    K  + +  L+    ++I
Sbjct: 1131 VMVHRILVHKTVEDRILELQDRKRALIEGALDETASKSI 1169



 Score = 41.3 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L    I     N     ++  Q        D+          KI
Sbjct: 785 LYEGLESKTQIRFNRYLDEGTIGRNYSNILVLLLRLRQACCHPHLIDDLGVEANAATAKI 844

Query: 57  KALEV 61
             +E 
Sbjct: 845 DLIEN 849


>gi|150865205|ref|XP_001384327.2| SNF2 family DNA-dependent ATPase [Scheffersomyces stipitis CBS
           6054]
 gi|149386461|gb|ABN66298.2| SNF2 family DNA-dependent ATPase [Scheffersomyces stipitis CBS
           6054]
          Length = 715

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
              KI     ++ +         IIV   F S    ++            +    T+D  
Sbjct: 538 PSAKISKCVELLREIFKSYPGEKIIVFSQFTSLFDIMKLVLDKEEIDFLRYDGSMTIDHK 597

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             TI+ + +  + +L     +   GL L    + ++    +W+       +E   + R  
Sbjct: 598 NSTIKRFYQEDVKVLLLSLKAGNVGLTLT-CASHVIIIDPFWNP-----YVEEQAMDRAH 651

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G +R VFV+ ++   T++  +++    K  +    L+ 
Sbjct: 652 RIGQEREVFVHRILIAGTVESRIMELQDRKREMVGAALDE 691


>gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina
           98AG31]
          Length = 824

 Score = 84.8 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI 109
            + ++ ++   +V   F   L  +++                    +D       N   +
Sbjct: 664 KLNKEDHSIKSLVFSQFTVFLDLIERRLQLAGFKLARLQGHMTPEARDRTIKHFMNNNDV 723

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++RI      + G  R V V  
Sbjct: 724 QVFLVSLKAGGVALNLTE-ASRVFIMDPWWNPAVELQAMDRI-----HRLGQHRPVVVTR 777

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LI +N+I+  +++  + K  +    L    +
Sbjct: 778 LIIENSIESRIVELQKKKEAMTGAALGDDDQ 808


>gi|159489898|ref|XP_001702928.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158270951|gb|EDO96781.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 962

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +     G   D+     +  N   IP+        G GL L    + ++     W+    
Sbjct: 678 EYCRIDGDVDDRQAHVARFQNSKTIPVFLLTSQVGGLGLTLTA-ADRVIIVDPAWNPS-- 734

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              I+   V R  + G  R V VY LI   T++E + ++   K  + 
Sbjct: 735 ---IDNQSVDRAYRMGQTRDVVVYRLITCGTVEEKIYRKQVFKGGLS 778


>gi|297795067|ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311253|gb|EFH41677.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             E +K LE I +  +    IV   + S L  L+            F            ++
Sbjct: 1140 SELLKCLEKIQKSGSGEKSIVFSQWTSFLDLLEIPLRRKGFEFLRFDGKLAQKGREKVLK 1199

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+NE K   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 1200 EFNETKQKTILLMSLKAGGVGLNLTA-ASSVFLMDPWWNPAVEEQAIMRI-----HRIGQ 1253

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            KR VFV   I ++T++E + Q    K  +    L
Sbjct: 1254 KRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL 1287



 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 27/138 (19%), Gaps = 22/138 (15%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               N     ++  Q  N           ++  D                  + +      
Sbjct: 995  NYANILELLLRLRQCCNHPFLVMSRADSQQYAD------------------LDSLARRFL 1036

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL---VFFSL 137
                        +       IQ+  +G          S    + L    + +      + 
Sbjct: 1037 DNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPI-LTPCAHRMCRECLLTS 1095

Query: 138  WWDLEEHQQMIERIGVTR 155
            W         I R  + R
Sbjct: 1096 WRSPSCGLCPICRTILKR 1113


>gi|238881773|gb|EEQ45411.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1100

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HD 53
               +     +    ++       +  +  +  +    +  + +   +             
Sbjct: 865  KTVKEHNMTEFLIFDMLHIQKL-EMSQVQKFCSQHYQHKIKSNQTLIREFIKRDNGFESS 923

Query: 54   EKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
             KI     +I +         +IV   F S    +                         
Sbjct: 924  AKIHKCLEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNN 983

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             I+E+ +    +L     +   GL L    N +     +W+       +E   + R  + 
Sbjct: 984  VIKEFYQSSKNVLLLSLRAGNAGLTLT-CANHVFIMDPFWNP-----FVEEQAMGRAHRI 1037

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R VFV+ ++   T++  +++   +K  + +  L+ 
Sbjct: 1038 GQTREVFVHRVLIAGTVENRIMELQESKKHLIESALDE 1075



 Score = 34.7 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 10/171 (5%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI-----KALE 60
           + Q+     L      A  + +  ++  Q    +   +  ++  +V D +       +  
Sbjct: 712 RVQKAAKKILGEHTKNAP-ALTLLLRLRQACCHSYLVEIGEYRAKVKDSEAEASASNSKL 770

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
                 N A  +         + +     +G   +   C +   N      L       G
Sbjct: 771 DWRSMLNNARNLKESVKQQVHSLIGSLNGEGNIENTPACPVCFDNIDIESSLLI----FG 826

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
              ++   G    FF      ++  +   RIG  +  Q   K      +LI
Sbjct: 827 ECGHIICKGCCNTFFENCNAGDDDDESPHRIGECKDCQKTVKEHNMTEFLI 877


>gi|170587941|ref|XP_001898732.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158592945|gb|EDP31540.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 798

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +++     +++N +  I +L       G GLNL  G +I++F    W+      + +  
Sbjct: 582 PVNERHAVAEKFNVDPSIHVLILTTNIGGEGLNLT-GADIVIFLEHDWNP-----VKDLQ 635

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + R  + G K AV VY LI + +I++ +++  + K+   + L+ A  +
Sbjct: 636 AMDRAHRIGQKCAVNVYRLITEGSIEQKIMRLQKFKTDTANALVGADNR 684


>gi|302814039|ref|XP_002988704.1| hypothetical protein SELMODRAFT_128555 [Selaginella moellendorffii]
 gi|300143525|gb|EFJ10215.1| hypothetical protein SELMODRAFT_128555 [Selaginella moellendorffii]
          Length = 669

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 17/145 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW-NEG 107
           ++ +I K  +A  +V   F S L  +  +F            G +L +    I  + N+ 
Sbjct: 530 VKKMISKDTSAKGLVFSQFTSMLDLIGYSFELAGVKCVKLDGGMSLSQRSTAIDTFRNDP 589

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  L      + G  LNL    + +     WW+       +E     R  + G  + + V
Sbjct: 590 ECKLFLMSLKAGGVALNLT-VASYIFLMDPWWNPA-----VEHQAQDRIHRIGQYKPIRV 643

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQD 192
              + +N+++E +L+    K  + +
Sbjct: 644 TRFVIENSVEERILKLQEKKQLVFE 668


>gi|238484253|ref|XP_002373365.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
           NRRL3357]
 gi|220701415|gb|EED57753.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
           NRRL3357]
          Length = 885

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 44/214 (20%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEE----------------------KHWKEVHDEKIKA 58
            + N+        +L N                              +H+      KI+ 
Sbjct: 487 NSENALQLITILKKLCNSPSLLSPRNVDEKPSETIAALLSSLPPNLLRHFSPSSSAKIRV 546

Query: 59  LEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           L+ ++   +   +  +++  ++ S L  L                     K    ++++N
Sbjct: 547 LDQLLHILHTSTSEKVVLVSNYTSTLNLLATLLTSLSLPFLRLDGSTPAQKRQSLVEDFN 606

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                +         + G GLNL  G + L+ F + W+        +   + R  + G K
Sbjct: 607 RFPTNRCFAFLLSAKAGGTGLNL-IGASRLILFDVDWNPAT-----DIQAMARIHRDGQK 660

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R   +Y ++ + +++E + QR  TK  + D ++ 
Sbjct: 661 RHCRIYRILLKGSLEEKIWQRQVTKLGLADSVME 694


>gi|158285422|ref|XP_564675.3| AGAP007573-PA [Anopheles gambiae str. PEST]
 gi|157019984|gb|EAL41756.3| AGAP007573-PA [Anopheles gambiae str. PEST]
          Length = 2705

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 8/157 (5%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                 V  + +  L +I        I    ++ +                +    I E+N
Sbjct: 1545 GDRLLVFSQSLLTLNLIERFLQHNKIPGTENYWA-KNISYFRLDGSTVAQEREKLINEFN 1603

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                + L      +   G+NL  G N +V F   W+        +   V R  + G K+ 
Sbjct: 1604 SNPNVHLFLVSTRAGSLGINL-VGANRVVVFDASWNP-----CHDTQAVCRVYRYGQKKP 1657

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             FVY L+  N +++ +  R   K  + D +++    +
Sbjct: 1658 CFVYRLVMDNCLEKKIYDRQINKQGMSDRIVDECNPD 1694


>gi|298711307|emb|CBJ26552.1| DNA repair and recombination protein RAD54 homolog [Ectocarpus
           siliculosus]
          Length = 1510

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 83/271 (30%), Gaps = 78/271 (28%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------------- 44
           K Y      +E+   L G+     N  S      +L N      E               
Sbjct: 463 KIYKHLLSSKEIRHILNGKQ---TNILSSIGAMQKLCNHPKLLVEGAAGRDSGSHAEIAS 519

Query: 45  -----------------------------------EKHWKEVHDEKIKALEVIIEKA--- 66
                                              +K        K++ L  ++ +    
Sbjct: 520 MLPAETSSSSALAEGVGGRGMSGGGGFGRRSSGGMQKGVFPEWSGKMETLFRLMREMRNT 579

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFA 114
               I+V  +F S L  +     +             + K    +  +NE          
Sbjct: 580 GDDRIVVVSNFTSSLDLIGSMCRENSWPFVRLDGSTGVSKRQKMVNAFNEPGPQSFAFLL 639

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  GGN LV F   W+       +++    R  + G K+  FVY  ++  
Sbjct: 640 SSKAGGCGLNL-IGGNRLVLFDPDWNPA-----VDKQAAARVWRDGQKKRCFVYRFVSTG 693

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           TI+E V QR  +K  +Q+++    K+E   +
Sbjct: 694 TIEEKVFQRQLSKEGLQNIV--DDKEEVNSL 722


>gi|168025225|ref|XP_001765135.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162683722|gb|EDQ70130.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 793

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 26/180 (14%)

Query: 46  KHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ----------KAFPQG 91
           +        K+ AL  ++    EK      +V   F+  L  L+                
Sbjct: 611 EQNSTKSSAKVDALINLLVAAREKDPTEKSVVFSQFSQMLNCLEGPLADVGFRFVRLDGS 670

Query: 92  RTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            T  K    +  +         +      + G GLNL    + +     WW+       +
Sbjct: 671 MTSKKRQAALTAFRSKDPDSPTIFLLSLKAAGVGLNLVA-ASRVYMVDPWWNPA-----V 724

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETIHV 205
           E   + R  + G  R V V  LI  +TI++ +L+    K  +         A ++  + +
Sbjct: 725 EEQAMDRVHRLGQTRDVTVVRLIVTDTIEDRILELQERKRELATSAFEKRSAEQRRLLRI 784



 Score = 34.7 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 2   KQYHKFQ---RELYC-DLQGENI--EAFNSASKTVKCLQLANG----AVYYDEEKHWKEV 51
           + Y K +   +E+    ++   +           ++  Q+ N       Y +        
Sbjct: 462 ELYDKVEENGKEVIERFMESGTVLQNYATVLQIILRLRQICNHSALCPAYTEMFAAELNQ 521

Query: 52  HDEKIKALEVIIEK 65
            D K      +++K
Sbjct: 522 KDPKNVPPPELLDK 535


>gi|20072056|gb|AAH26672.1| Smarca4 protein [Mus musculus]
          Length = 749

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 42/231 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 143 LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 202

Query: 53  ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                         K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 203 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 262

Query: 91  --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +   
Sbjct: 263 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ--- 318

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 319 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 367


>gi|254577371|ref|XP_002494672.1| ZYRO0A06996p [Zygosaccharomyces rouxii]
 gi|238937561|emb|CAR25739.1| ZYRO0A06996p [Zygosaccharomyces rouxii]
          Length = 1529

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
             LQ   G +     K    + + K      +I       + V   F +    L       
Sbjct: 1246 LLQYDCGKLQ----KLAILLQNLKDHGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGA 1301

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++      + +N + +I        S G G+NL  G + ++F+   W+       +++
Sbjct: 1302 TKIEDRQVLTERFNTDPRITAFILSSRSGGLGINLT-GADTVIFYDSDWNPA-----MDK 1355

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  R V +Y  ++ +TI+  +L++   K  + ++++  
Sbjct: 1356 QCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRQLDNVVIQE 1402


>gi|198412736|ref|XP_002121526.1| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a4, partial
           [Ciona intestinalis]
          Length = 586

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 67/212 (31%), Gaps = 36/212 (16%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE------------KHWKEVHDEKIKALEVII 63
           +     A    +  ++  ++ N    +                        ++     ++
Sbjct: 1   KQGKGGAKALMNTIMQLRKICNHPFMFRHIEESMAEFLQIPGGIVTGPDLYRVCGKFELL 60

Query: 64  E------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           +      K     +++     S +  L+  F                D     +Q++N  
Sbjct: 61  DRVLPKLKKYNHRVLLFCQMTSTMTILEDYFAYRGHKYLRLDGSTKADDRGLMLQKFNAP 120

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              I +      + G GLNLQ   + ++ +   W+  +     +     R  + G    V
Sbjct: 121 NSDIFIFLLSTRAGGLGLNLQS-ADTVIIYDSDWNPHQ-----DIQAQDRAHRIGQTNEV 174

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  L+  ++++E +L   R K  + + ++ A
Sbjct: 175 RVLRLMTVSSVEEKILAAARYKLNVDEKVIQA 206


>gi|324500193|gb|ADY40099.1| Helicase mot1 [Ascaris suum]
          Length = 1698

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            L            + +     + +N +  I +L    +  G GLNL  G ++++F    W
Sbjct: 1475 LDIRYSVLDGTVPVSERHAIAENFNNDPGIDVLLLTTSVGGEGLNLT-GADVVIFVEHDW 1533

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +      + +   + R  + G KR V VY LI + +I++ +++  + K+   + L+ A  
Sbjct: 1534 NP-----VKDLQAMDRAHRIGQKRTVNVYRLITEASIEQKIMRYQKFKTDTANALVGADN 1588

Query: 200  K 200
            +
Sbjct: 1589 R 1589


>gi|225468252|ref|XP_002267335.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 867

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+          +              ++++N   ++ ++    
Sbjct: 712 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 771

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+
Sbjct: 772 KAASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTV 825

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           ++ +L   + K  +        +
Sbjct: 826 EDRILALQQKKREMVASAFGEDE 848


>gi|15239896|ref|NP_199166.1| SNF2 domain-containing protein / helicase domain-containing protein /
            RING finger domain-containing protein [Arabidopsis
            thaliana]
 gi|60390960|sp|Q9FIY7|SM3L3_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3; Short=SMARCA3-like protein 3
 gi|10178192|dbj|BAB11616.1| DNA repair protein-like [Arabidopsis thaliana]
 gi|332007595|gb|AED94978.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
          Length = 1277

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             E +K LE I +  +    IV   + S L  L+            F            ++
Sbjct: 1112 SELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLK 1171

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+NE K   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 1172 EFNETKQKTILLMSLKAGGVGLNLTA-ASSVFLMDPWWNPAVEEQAIMRI-----HRIGQ 1225

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            KR VFV   I ++T++E + Q    K  +    L
Sbjct: 1226 KRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL 1259



 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 27/138 (19%), Gaps = 22/138 (15%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               N     ++  Q  N           ++  D                  + +      
Sbjct: 967  NYANILELLLRLRQCCNHPFLVMSRADSQQYAD------------------LDSLARRFL 1008

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL---VFFSL 137
                        +       IQ+  +G          S    + L    + +      + 
Sbjct: 1009 DNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPV-LTPCAHRMCRECLLTS 1067

Query: 138  WWDLEEHQQMIERIGVTR 155
            W         I R  + R
Sbjct: 1068 WRSPSCGLCPICRTILKR 1085


>gi|322792800|gb|EFZ16633.1| hypothetical protein SINV_04571 [Solenopsis invicta]
          Length = 3043

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI L      +   G+NL  G N  + F   W+   
Sbjct: 2066 YYRLDGSTSALEREKLINEFNSNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNP-- 2122

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   V R  + G K+  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2123 ---CHDTQAVCRVYRYGQKKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2172


>gi|225682466|gb|EEH20750.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb03]
          Length = 1605

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKA 66
            +  E  N  +  ++  +       Y +    + V+             K++ LE+++ K 
Sbjct: 953  KQTERHNLNNILMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLVPKL 1012

Query: 67   N--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL-- 112
                  +++   F  +L  ++        L +              I ++N    P    
Sbjct: 1013 QERGHRVLIFSQFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQKQIDDYNAPDSPYFAF 1072

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S G G+NL    + ++     ++  +     +   ++R  + G ++ V V+ L+ 
Sbjct: 1073 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQQKKVLVFQLVT 1126

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + + +E ++Q  + K  +  +L+  +  E
Sbjct: 1127 KASAEEKIMQIGKKKLALDQVLIEHMDAE 1155


>gi|290998710|ref|XP_002681923.1| SNF2 domain-containing protein [Naegleria gruberi]
 gi|284095549|gb|EFC49179.1| SNF2 domain-containing protein [Naegleria gruberi]
          Length = 1231

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K+K L+ ++ K       +++       +  L++   + R             +   
Sbjct: 1031 DSGKLKVLDQLLSKLKQEGHRVLIFCQMTKMMDLLEEYMYKRRYTFFRLDGSTGISERRD 1090

Query: 100  TIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +       +        + G G+ L    + ++F+   W+        +   + R 
Sbjct: 1091 MVDAFQNQRVDPVFAFLLSTKAGGLGITLTA-ADTVIFYDSDWNPTL-----DAQAMDRV 1144

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V +Y LI +N+++E +L   + KSTIQ+ +
Sbjct: 1145 HRIGQTKPVTIYRLITKNSVEERILAIAKQKSTIQETV 1182


>gi|308810895|ref|XP_003082756.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein (ISS)
           [Ostreococcus tauri]
 gi|116061225|emb|CAL56613.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein (ISS)
           [Ostreococcus tauri]
          Length = 1008

 Score = 84.8 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   + + +  ++    +             + +    +Q +  +  + ++     
Sbjct: 856 NKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQAFREDPNVSVILMSLK 915

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G GLNLQ   N +     WW+            V R  + G  R V       + TI+
Sbjct: 916 SGGEGLNLQA-ANYVYVLEPWWNPAVEM-----QAVMRAHRIGQHRPVTAVRFSTKGTIE 969

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E +++    K  + +  ++ 
Sbjct: 970 ERMMELQEKKQLVFEGCMDG 989


>gi|322499633|emb|CBZ34707.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1092

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAF----------P 89
             +      K +H  K+ A+   IEK      ++V   F S L   Q              
Sbjct: 911  IFARLDPQKPLHGTKLDAIANYIEKVPKDEKVVVFSQFGSMLDLTQYWLQRRSIRAVKLC 970

Query: 90   QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               TL +    +Q + ++  + ++     + G GLNLQ   N +V    WW+        
Sbjct: 971  GSLTLTQRQSVLQAFLHDQNVRVILISLKAGGEGLNLQ-VANHVVLTDPWWNPAVEM--- 1026

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V R  + G  R V     + +++++E +      K  + +  ++ 
Sbjct: 1027 --QAVQRAHRIGQTRPVHAVRFVTEHSVEERMADLQDKKMLVFEGTIDG 1073


>gi|156384005|ref|XP_001633122.1| predicted protein [Nematostella vectensis]
 gi|156220188|gb|EDO41059.1| predicted protein [Nematostella vectensis]
          Length = 627

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQG----------RT 93
                    K + L  ++ +   N   +++   F   +  ++                  
Sbjct: 462 GEELLYDSGKFERLNAMLPEMKDNGDRVLLFSQFTLVMDIIEVYLQHCGYRYFRLDGQTP 521

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + +    I  +N +  I L      + G G+NL    N+++   + ++        ++  
Sbjct: 522 VVERQPMIDNFNSDPDIFLFLLSTKAGGLGINLTS-ANVVILHDIDFNP-----YNDKQA 575

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             R  + G  R V VY LIA++T+++ +L+   +K  ++  +++A   E 
Sbjct: 576 EDRCHRVGQTRDVHVYRLIAKDTVEDNMLKCANSKLKLEKDVVSADNDEG 625


>gi|156088007|ref|XP_001611410.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
 gi|154798664|gb|EDO07842.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
          Length = 860

 Score = 84.4 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------- 96
           + +   K++ +  II+  +      ++   F   L  L+      +   +          
Sbjct: 694 QFLESAKVQEMFKIIDRVEQAGKKALIFSQFTMYLDLLETCLGLHKPQLEYLRLDGGHNP 753

Query: 97  --DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 ++ + N+  I LL     + G GLNL    + ++   L W+        +    
Sbjct: 754 STRTDIVERFTNDPNITLLLISTKAGGTGLNLT-VASTVILMDLDWNP-----HNDAQAE 807

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R  + G    V VY L+ ++TI+E + +  + K  + D 
Sbjct: 808 NRSHRIGQTEPVDVYKLMCEDTIEEYIWECCQRKLLLDDA 847


>gi|289622059|emb|CBI51237.1| unnamed protein product [Sordaria macrospora]
          Length = 1194

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 64   EKANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEWNEGKIPL 111
             +      I+   + S L  ++                      +D    +      + +
Sbjct: 1027 FQQTDEKTIIFSQWTSHLDLIECSLKFKLNIKYHRYTGNMPRSQRDNAIQEFVENPDVKV 1086

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     +   GLNL    + ++    +W+       IE   V R  + G K  V +Y ++
Sbjct: 1087 LLVSLKAGNAGLNLT-VASRVIVCDPFWNP-----FIEDQAVDRAHRIGQKSEVHIYKIL 1140

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + TI++ + +    K  I +  L+  + + +
Sbjct: 1141 VEETIEDRITELQNVKRDIVETALDETQSKQL 1172



 Score = 35.9 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 2/21 (9%), Positives = 4/21 (19%)

Query: 21  EAFNSASKTVKCLQLANGAVY 41
              N     ++  Q       
Sbjct: 848 NYSNILVLLLRLRQACCHPHL 868


>gi|320580749|gb|EFW94971.1| SNF2 family DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 1485

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
           +  ++ I+E      +IV   F                   +         K       +
Sbjct: 796 LTLIKDILETKPGEKVIVFSQFMVLFDILELFLRDHGIEYLRYDGSMNVEAKSASVATFY 855

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    ++     +   GL L    + ++    +W+       +E+    R  +    R 
Sbjct: 856 QDPNKKVMLLSLKAGNVGLTLT-CASHVIILEPFWNP-----FVEKQAQDRVHRISQVRE 909

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           V+V+ ++ +NT+++ +++    K  + +  L+   ++ ++
Sbjct: 910 VYVHRILIRNTVEDRIIELQAEKEKLVESALDPTARQQVN 949


>gi|50293735|ref|XP_449279.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528592|emb|CAG62253.1| unnamed protein product [Candida glabrata]
          Length = 1476

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------- 50
           + Y     + Y  L  G     F+  +     ++ +N    +D  +              
Sbjct: 639 EYYKNILTKNYSALTAGAKGGRFSMLNIMNTLMKASNHPYLFDSAEEKVLEKFGAGNMSR 698

Query: 51  --------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+  L+ ++   K +   +++       L  L                
Sbjct: 699 ENILRGLIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRILDILGDYLSIKGINFQRLDG 758

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               ++    I  +N       +      + G G+NL    + ++ F   W+ +      
Sbjct: 759 TVPSNQRRIAIDHFNAPGSDDFVFLLSTRAGGLGINLMT-ADTVIIFDSDWNPQA----- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G K  V VY L++++T++E VL+R R K  ++  +++
Sbjct: 813 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 860


>gi|56474875|gb|AAV91782.1| Brg1 [Xenopus laevis]
          Length = 1600

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 74/231 (32%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  +++N    + + +     H    
Sbjct: 992  LYRHMQGKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKISNHPYMFQQIEESFSEHLGFT 1051

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     + +  ++  F          
Sbjct: 1052 GGIVQGQDVYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRGFKYLRL 1111

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  D     ++ +NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1112 DGTTKADDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVVIFDSDWNPHQ--- 1167

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1168 --DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1216


>gi|226289867|gb|EEH45351.1| chromodomain-helicase-DNA-binding protein [Paracoccidioides
            brasiliensis Pb18]
          Length = 1348

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 72/198 (36%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEKAN--AAPIIVAY 75
             ++  +       Y +    + V+             K++ LE+++ K       +++  
Sbjct: 964  LMQLRKCLCHPFVYSKAIEERTVNAALSHRNLVEASSKLQLLEMLVPKLQERGHRVLIFS 1023

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F  +L  ++        L +              I ++N    P         S G G+
Sbjct: 1024 QFLDNLDVIEDFLDGLGLLHRRLDGSMTSLQKQKQIDDYNAPDSPYFAFLLSTRSGGVGI 1083

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++Q 
Sbjct: 1084 NL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQQKKVLVFQLVTKASAEEKIMQI 1137

Query: 184  LRTKSTIQDLLLNALKKE 201
             + K  +  +L+  +  E
Sbjct: 1138 GKKKLALDQVLIEHMDAE 1155


>gi|209875623|ref|XP_002139254.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209554860|gb|EEA04905.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1071

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 30/224 (13%)

Query: 6    KFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKE--------VHD 53
            + +     ++    +       +  ++  +  Q A G +Y  E              ++ 
Sbjct: 843  EMEMHQIKEINKGEVNKNLLQISKTTQLPEQSQQAKGVIYEREYSLIDTSGTYWKPTIYS 902

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
             KI+ L   + K   +   +++   + S L  ++ A        +              I
Sbjct: 903  TKIRTLLEYLHKDINDNQKVVIFSQWTSFLDIIEMALNCHSFNFRRLDGSISMSKRGSII 962

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              ++E K  +L     + G GLNL      +    LWW+       +E   + R  + G 
Sbjct: 963  SWFSESKQKILLVSIKAGGVGLNLVA-ATRVYLTDLWWNPA-----VEEQALQRIYRLGQ 1016

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + V +Y ++ + +++E +LQ  + KS I   +L     E + +
Sbjct: 1017 TKTVHMYRIVCRKSVEERILQLHQLKSDISSKILGDETNEKVRI 1060


>gi|19111970|ref|NP_595178.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723497|sp|Q10332|YBMA_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C582.10c
 gi|5420446|emb|CAB46673.1| ATP-dependent DNA helicase Rhp16b (predicted) [Schizosaccharomyces
           pombe]
          Length = 830

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 26/178 (14%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANA---------APIIVAYHFNSDLAR---------- 83
            +          KI+ +  I+                 I+   F + L            
Sbjct: 636 QDPNDKTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKAGI 695

Query: 84  -LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              +   +     ++       ++    +L         GLNL    + ++   +WW+  
Sbjct: 696 GFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNLT-CASRVILCDVWWNPA 754

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                IE   + R  + G +R V VY L+ +NTI+E +++    K  +    L   KK
Sbjct: 755 -----IEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGDGKK 807


>gi|332019859|gb|EGI60320.1| DNA repair and recombination protein RAD54B [Acromyrmex echinatior]
          Length = 857

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH--------------------DEKIKALEVIIE- 64
            S      ++ N    +  E+                            K+  ++ ++  
Sbjct: 561 LSIITALKKICNHPNLFLNEEEKALYDVLSKVSYLSQIKRDENFTEYCGKVTIVQTLMRN 620

Query: 65  -KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPL 111
            K     +++  ++   L  L+                 +        +++N       +
Sbjct: 621 LKKTDEKLVLVSYYTQTLDLLETICNMERLKFLRLDGATSSTIRLKITEQFNTQTDNSKV 680

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL  G + LV F   W+     Q + RI      + G KR V++Y L+
Sbjct: 681 LLLSAKAGGVGLNL-PGASRLVLFDSDWNPASDMQAMARIW-----RDGQKRNVYIYRLL 734

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              TI+E + QR  +K+ + + +++
Sbjct: 735 TTGTIEEKIYQRQISKANLSETVVD 759


>gi|302144115|emb|CBI23220.3| unnamed protein product [Vitis vinifera]
          Length = 679

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-----------DKDPCTIQEWNEGKIP 110
           ++E   +A  IV   F S L  +  +  Q                KD    +   +    
Sbjct: 543 MVEMDGSAKGIVFSQFTSFLDLISYSLHQSGINCVQLVGKMTATAKDAAVKRFNEDPDCK 602

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G  LNL    + +     WW+    QQ  +RI      + G  + V V   
Sbjct: 603 IFLTSLKSGGAALNL-PVASYVFLMEPWWNPFVEQQAYDRI-----HRIGQYKPVRVIKF 656

Query: 171 IAQNTIDELVLQRLRTKSTIQD 192
           I +NTI+E +L+    K ++ +
Sbjct: 657 IIENTIEERILELQEKKESLSE 678



 Score = 35.5 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 4/99 (4%)

Query: 3   QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y + Q E    ++   +     +      +  Q  +        K  + + D      +
Sbjct: 403 LYKECQLEFNRYVEDGTLMNYYVHILELITRLRQALDHPYLVVHSKSGEALCDICKWVAK 462

Query: 61  VIIEKANAAPIIVAY--HFNSDLARLQKAFPQGRTLDKD 97
            ++  +       A    F   L +            + 
Sbjct: 463 DLVVTSCGHTFCKACLEDFTKILGKSLCPTCSLPFTPRK 501


>gi|196005243|ref|XP_002112488.1| hypothetical protein TRIADDRAFT_25002 [Trichoplax adhaerens]
 gi|190584529|gb|EDV24598.1| hypothetical protein TRIADDRAFT_25002 [Trichoplax adhaerens]
          Length = 807

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 81  LARLQKAFPQGRTLDK-DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFS 136
           L+        GRT  +     I ++N        +      +   G+NL    + +V F 
Sbjct: 610 LSYEDYCRMDGRTSAELRQRYIDKFNNSNSYRCRVFLISTRAGSLGINLTA-ASRVVLFD 668

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + W+        +   + R  + G K+ V+VY L+A+ T+++ + +R  TK ++   +++
Sbjct: 669 VGWNPS-----YDMQAIFRAYRFGQKKTVYVYRLVAKGTMEQKIYERQVTKQSLAYRVID 723


>gi|296808475|ref|XP_002844576.1| RAD54B protein [Arthroderma otae CBS 113480]
 gi|238844059|gb|EEQ33721.1| RAD54B protein [Arthroderma otae CBS 113480]
          Length = 960

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 91  GRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                K    + ++N               + G GLNL  G + LV F + W+       
Sbjct: 686 STPATKRQALVDDFNRSSPSACFAFLLSAKAGGTGLNL-IGASRLVLFDVDWNPAT---- 740

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   + R  + G KR   +Y L+ +  I+E + QR  TK  + D +++
Sbjct: 741 -DLQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMD 788


>gi|84998504|ref|XP_953973.1| recombinational repair (RAD54 ) protein [Theileria annulata]
 gi|65304971|emb|CAI73296.1| recombinational repair (RAD54 homologue) protein [Theileria
           annulata]
          Length = 806

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 73/234 (31%), Gaps = 48/234 (20%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            Y  F   +     +  + +E+  + S     ++L N                       
Sbjct: 413 IYKSFVNSKRWKNIMNQDRVESR-ALSAIQSLMKLCNHPYLIKRGGLMSSPDVDSLLLDI 471

Query: 52  ----HDEKIKAL--------------EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                  K K                   I K +   +++  ++   L   ++   +   
Sbjct: 472 ENATKSSKYKCCRCDLSGKFLVLFRLLYQIRKNSNDRVVIISNYTQTLDLFERLCKECSY 531

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G ++ K    +  +N+      +      + G G+NL  G N LV F   W+ 
Sbjct: 532 PFERLDGGTSIKKRHKLVTTFNDPNSNSFVFLLSSKAGGCGINL-IGANRLVLFDPDWNP 590

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  ++  + R  + G  +  ++Y   +  TI+E + QR   K  +  +L+
Sbjct: 591 AN-----DKQALARVWRDGQTKVCYIYRFFSTGTIEEKIYQRQICKDGLSSMLV 639


>gi|38566825|emb|CAE76132.1| related to helicase-DNA-binding protein [Neurospora crassa]
          Length = 1678

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
             ++  +       Y +    + +              K+  LEV++ K       +++  
Sbjct: 1017 LMQLRKCLCHPFVYSQSIEDRNLSPEVTKRNLIEASSKLLLLEVMLPKLRERGHRVLIFS 1076

Query: 76   HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
             F   L  L+          +              I  +N     L        + G G+
Sbjct: 1077 QFLDQLTILEDFLAGMDLPYQRLDGSQSSMEKQKRIDAFNAPDSQLFCMLLSTRAGGVGI 1136

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     W+  +     +   ++R  + G ++ V  + L+  ++ +E +LQ 
Sbjct: 1137 NL-ATADTVIILDPDWNPHQ-----DIQALSRAHRIGQQKKVLCFQLMTVDSAEEKILQI 1190

Query: 184  LRTKSTIQDLLLNAL 198
             R K  +  LL+  +
Sbjct: 1191 GRKKMALDHLLIETM 1205


>gi|225468256|ref|XP_002267495.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera]
          Length = 835

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
               IV   +   L  L+          +              ++++N   ++ ++    
Sbjct: 680 GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSL 739

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T+
Sbjct: 740 KAASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTV 793

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           ++ +L   + K  +        +
Sbjct: 794 EDRILALQQKKREMVASAFGEDE 816


>gi|255718473|ref|XP_002555517.1| KLTH0G11132p [Lachancea thermotolerans]
 gi|238936901|emb|CAR25080.1| KLTH0G11132p [Lachancea thermotolerans]
          Length = 1339

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 53   DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++   K     +++ +     +  +++     +              +   
Sbjct: 1174 STKLKKLDELLVDLKKGDHRVLIYFQMTKMMDLMEEYLTYRQYKHIRLDGSSKLEDRRDL 1233

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1234 VHDWQTKPDIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1287

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R V VY L+ + TI+E +  R + K  +Q +++    ++
Sbjct: 1288 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEGKTQD 1329


>gi|260815495|ref|XP_002602508.1| hypothetical protein BRAFLDRAFT_93815 [Branchiostoma floridae]
 gi|229287819|gb|EEN58520.1| hypothetical protein BRAFLDRAFT_93815 [Branchiostoma floridae]
          Length = 1002

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 49/203 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   Q +      G   +           +  ++  ++ N                   
Sbjct: 408 LYSHMQSKGVLLTDGSEKDKKGRGGTKTLMNTIMQLRKICNHPF---------------- 451

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF--A 114
                               F      +          +     +  +NE   P      
Sbjct: 452 -------------------MFQHIEVCVTCCLDGTTKSEDRSQLLHLFNEKDSPYFLFLL 492

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNLQ   + +V F   W+  +     +     R  + G K  V V  L+  N
Sbjct: 493 STRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQAQDRAHRIGQKSEVRVLRLMTIN 546

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +++E +L   R K  + + ++ A
Sbjct: 547 SVEEKILAAARFKLNVDEKVIQA 569


>gi|241720419|ref|XP_002413614.1| E1A-binding protein p400, putative [Ixodes scapularis]
 gi|215507430|gb|EEC16922.1| E1A-binding protein p400, putative [Ixodes scapularis]
          Length = 2377

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 39/181 (21%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA 87
            ++ +Q   G                K++ L+ ++ +       +++       L  L++ 
Sbjct: 1157 LRLIQYDCG----------------KLQVLDRLLWQLRGGQHRVLIFTQMTRMLDILEQF 1200

Query: 88   -FPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                G T  +             ++ +N + +I        S G G+NL  G + +VF+ 
Sbjct: 1201 LNYHGHTYLRLDGSTRVDQRQALMERFNADRRIFCFILSTRSGGIGVNLT-GADTVVFYD 1259

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       ++     R  + G  R V +Y      T++E +L++   K  + D+ + 
Sbjct: 1260 SDWNPT-----MDAQAQDRCHRIGQTRDVHIYR----QTVEENILKKATQKRMLGDVAIE 1310

Query: 197  A 197
             
Sbjct: 1311 G 1311


>gi|326437899|gb|EGD83469.1| hypothetical protein PTSG_04077 [Salpingoeca sp. ATCC 50818]
          Length = 1562

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------ 91
             +    E   +       +  ++ + ++  +   IV   + S L  +Q+A   G      
Sbjct: 1366 HSSDPSEPFKYSTKIRALLSEIKAMRQEDESNKCIVFSQWTSMLDLIQRAVESGGYTTAR 1425

Query: 92   -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    ++        ++    +      S G GLNL    + ++    WW+    +Q
Sbjct: 1426 LDGSMSQQERSRALATFKSDPTCTVFLITLRSGGVGLNLTA-ASHVMLMDPWWNPSVEEQ 1484

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             I+R+      + G  + V V   I   T++E +      K  +    L +
Sbjct: 1485 AIDRV-----HRIGQDKPVCVKRFIMLGTVEERIRVLQAKKCQLVQSALAS 1530


>gi|312220832|emb|CBY00773.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1533

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKI 109
             +  K      IV   F S L  ++                 +  +   +I  +     +
Sbjct: 886  KLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMSPAQRQKSIDHFMTNPDV 945

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G  LNL    + +     WW+     Q  +R       + G KR   +  
Sbjct: 946  EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQKRPCVITR 999

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L  +++++  ++     K+ +    +N  K
Sbjct: 1000 LCIEDSVESRMVALQEKKAAMIAGTVNNDK 1029


>gi|195446151|ref|XP_002070651.1| GK12181 [Drosophila willistoni]
 gi|194166736|gb|EDW81637.1| GK12181 [Drosophila willistoni]
          Length = 1953

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 77/256 (30%), Gaps = 62/256 (24%)

Query: 1    MKQYHKFQRELYCDLQGENIEAF-----------------NSASKTVKCLQLANGAVYYD 43
            ++ Y  F ++   D   +  ++                  +          + N      
Sbjct: 1635 LRLYEDFSKKHLKDCLDKLGDSPGAATGTTTSTENLNGRTHIFQALRYLQNVCNHPKLVL 1694

Query: 44   EEKHWKEV----------------HDEKIKALEVIIEKA---------NAAPIIVAYHFN 78
             +                      H  K+ AL+ ++            +    ++     
Sbjct: 1695 RQSEELGPIVTQLALSNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLK 1754

Query: 79   SDLARLQK-------------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
            + L  ++                       +    +  +N +  I +L       G GLN
Sbjct: 1755 AMLDIVEHDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLGLN 1814

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G + ++F    W+      M +   + R  + G K+ V VY LI +N+++E ++   
Sbjct: 1815 LT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQ 1868

Query: 185  RTKSTIQDLLLNALKK 200
            + K    + +++A   
Sbjct: 1869 KFKILTANTVVSAENA 1884


>gi|145238522|ref|XP_001391908.1| DNA excision repair protein (Rad26L) [Aspergillus niger CBS 513.88]
 gi|134076397|emb|CAK48215.1| unnamed protein product [Aspergillus niger]
          Length = 1013

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              +
Sbjct: 613 NYANPEFCGKWKVLRRLLKWWHANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMS 672

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + ++N   +  +      S G GLN+    N +V     W+        +   
Sbjct: 673 YEERTKVVDDFNSNPRQFVFLISTRSGGVGLNITS-ANKVVIVDPNWNPSH-----DLQA 726

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 727 QDRAYRIGQSRDVEVFRLISAGTIEEIVYARQIYKQQQAN 766


>gi|145475071|ref|XP_001423558.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390619|emb|CAK56160.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               +I  +      I+  +         +   Q +  D+     +     KI        
Sbjct: 909  WRVLIFCQMTRMLDILEEYMLHKGYTYFRMDGQCQINDRRDMVNEFQQNDKIFAFLLSTR 968

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+ L    + ++F+   W+       ++     R  + G  + V+VY LI + TI+
Sbjct: 969  AGGLGITLTQ-ADAVIFYDNDWNPT-----MDAQATDRAHRIGRTKDVYVYRLITKGTIE 1022

Query: 178  ELVLQRLRTKSTIQDLL 194
            E +++R + K  +Q  +
Sbjct: 1023 ERIVKRAQQKQNVQSTV 1039


>gi|39965277|ref|XP_365085.1| hypothetical protein MGG_09930 [Magnaporthe oryzae 70-15]
 gi|145013168|gb|EDJ97809.1| hypothetical protein MGG_09930 [Magnaporthe oryzae 70-15]
          Length = 941

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANG-------AVYYDEEKHWKEVHDEKIKALEVIIEKA--NA 68
           +     +  ++ +                +   + +    +   K++ L  ++ +   N 
Sbjct: 718 KQDNKQHLIAELMDLSDFELHVWCVDEPCIKKFDVEKDSWMESGKVQKLLELLRQFRKNG 777

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPA 117
              ++   F   +  L +                        I E+N    +        
Sbjct: 778 DRALIFTRFAKVIEILTECLSTAEVPHLTFQGSTAVDMRQDLIDEFNENKDLTAFLLTTG 837

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    N ++ F    + ++     +     R  + G  R V V  LI++++I+
Sbjct: 838 AGGTGINL-ASANKVIIFDQSDNPQD-----DVQAENRAHRFGQTRPVEVIRLISRDSIE 891

Query: 178 ELVLQRLRTKSTIQDLL 194
           ELV +  + K  + + +
Sbjct: 892 ELVYKACQKKLELANRV 908


>gi|291235335|ref|XP_002737602.1| PREDICTED: DNA excision repair protein ERCC-6-like [Saccoglossus
           kowalevskii]
          Length = 2298

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 61/251 (24%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------YDEEK 46
           K Y  F      +++   +   +  +      ++ +                    D   
Sbjct: 388 KIYQDFVE--TPEVRQLLMTTRSPLAMLTMLKKICDHPRLLNKRACGMLNLEGEECDPYG 445

Query: 47  HWKEV------------------------HDEKIKALEVIIE--KANAAPIIVAYHFNSD 80
            + +                            K+  L  ++E  +      +V       
Sbjct: 446 DYSDTASQISSSECAADNIDNVSISALVEESGKLVVLISLLENLRDEGHRTLVFSQSKKM 505

Query: 81  LARLQKAFPQGR-----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
           L  +QK   +              L+     I ++       +        G GL L   
Sbjct: 506 LDIMQKVLEEKNFKLIRIDGSIRKLEDREKLINKFQRNSSYSVFLLTTGVGGIGLTLTA- 564

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +V F   W+        +   V R  + G K+ V +Y LI   +++E + +R   K 
Sbjct: 565 ADRVVIFDPSWNPAT-----DSQAVDRAYRLGQKKTVVIYRLITCGSVEEKIYRRQIFKD 619

Query: 189 TIQDLLLNALK 199
           +I      + K
Sbjct: 620 SITKQATGSSK 630


>gi|190346274|gb|EDK38320.2| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDK 96
              KI+AL   + K     +    IV   F S L  ++    +                +
Sbjct: 674 SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQGSMSPQQR 733

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D           + +      + G  LNL    + +     WW+     Q ++R+     
Sbjct: 734 DNTIRHFMENTGVEVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV----- 787

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G KR + +     +++I+  +++    K+ + +  +N+
Sbjct: 788 HRIGQKRPIRITRFCIEDSIESKIIELQEKKANMINATINS 828


>gi|156545712|ref|XP_001604847.1| PREDICTED: similar to PASG [Nasonia vitripennis]
          Length = 1193

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 28/186 (15%)

Query: 33  LQLANGAVYYDEE---------KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
             + N                          KI  L+ +++K   N   +++       L
Sbjct: 598 RHVVNHPYLIHYPLTDAGDYKVDENIIKASGKILVLDALLKKLYKNGHKVLLFSTMTMVL 657

Query: 82  ARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
             ++                   D    +I  +    ++ L      +   GLNL    +
Sbjct: 658 DVIEDYLSLRGFKYVRLDGAVAYDDRKDSIDSFQKNPEVFLFLLTTKAGAVGLNL-AAAD 716

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +      +   + R  + G  + V VY L  + T+DE +++R   K  +
Sbjct: 717 TVIIYDSDWNPQN-----DLQAMARCHRIGQTKPVAVYRLCTKGTVDEAIIKRANAKRFL 771

Query: 191 QDLLLN 196
           +  +++
Sbjct: 772 EKAVIS 777


>gi|170096925|ref|XP_001879682.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164645085|gb|EDR09333.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 984

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 19/173 (10%)

Query: 45  EKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA-----------RLQKAFPQG 91
                     K+ AL   +   ++     I    + S L            R  +   + 
Sbjct: 785 RGDDDMEPSTKMLALIDYLKEWESTGDKTICYSQWTSMLDLIETLFSRHGIRSLRFDGKM 844

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +D         G   ++         GLNL    N +V   L W+        E  
Sbjct: 845 DRTSRDATLASFKQIGGPKVILISTKCGSVGLNLVS-ANRIVNMDLSWNYAA-----ESQ 898

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              R  + G ++ V V  L+ +NTI+E +L+    K  + +  L       +H
Sbjct: 899 AYDRCHRIGQEKTVHVKRLVVENTIEERMLKLQDVKVGLAEAALGEGTGAKLH 951



 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 14/153 (9%)

Query: 3   QYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y  F++     L     E              ++  QL              E     +
Sbjct: 437 VYDCFEKRTKIRLNKFIRERTLLKNHAAVLVMILRLRQLCCHPHLILSLTDGYEDPTLLV 496

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            +     ++   A  ++   + +++   +K F     + +      E +  +        
Sbjct: 497 ASDAE--KELGRAKKLMGAAWVAEV---KKRFLLRAAVSELLDFSDEADAPEANCPVCKD 551

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                   +   G+ + F      LE     I 
Sbjct: 552 MYINDSGRILACGHEICF---DCSLELKNAPIA 581


>gi|297735171|emb|CBI17533.3| unnamed protein product [Vitis vinifera]
          Length = 800

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 70/192 (36%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGA-----------VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
             V+  +  N             +Y   E+  ++    ++    +    A    +++   
Sbjct: 519 LMVQLRKNCNHPDLLESAFDGSYLYPPVEQIVEQCGKFRLLDRLLARLFARKHKVLIFSQ 578

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLN 124
           +   L  ++  F +             LD+    I+E+N+      +      + G G+N
Sbjct: 579 WTKILDIMEYYFSEKGLEVCRIDGSVRLDERKRQIEEFNDMNSNCRVFLLSTRAGGLGIN 638

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  + V VY L    +I+  +L+R 
Sbjct: 639 LTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRA 692

Query: 185 RTKSTIQDLLLN 196
            +K  ++ +++ 
Sbjct: 693 FSKLKLEHVVIG 704


>gi|189203985|ref|XP_001938328.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985427|gb|EDU50915.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1118

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 21/203 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAV--YYDEEKHWKEVHDEKIKALEVIIE 64
             + E + +   + I       +  +C QLA+        E ++ + +   K+  L  +++
Sbjct: 851  LKEETFAESNPDIIYEELELYQDYQCHQLASKYRALKKFELQNHEWMDSGKVAKLLALLK 910

Query: 65   KA--NAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPL 111
            K   N    +V   F S          D             + +    +   + +  I L
Sbjct: 911  KYKENGDRALVFSQFTSVMDILGWVFDDHDINFMRMDGSTPIQERQSLMDVFYQDESIQL 970

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  S G G+NL    N ++ F   ++ ++     +     R  + G  R V V  L+
Sbjct: 971  FMISTKSGGAGINL-ACANKVIIFDSSFNPQD-----DIQAENRAHRVGQTREVEVVRLV 1024

Query: 172  AQNTIDELVLQRLRTKSTIQDLL 194
             ++T++E +     +K  +  ++
Sbjct: 1025 TKDTVEEQIYALGVSKLELDKMV 1047


>gi|58263400|ref|XP_569110.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57223760|gb|AAW41803.1| hypothetical protein CNB01040 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1277

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 21/151 (13%)

Query: 62   IIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK--- 108
            IIE+  +  IIV   F   +                +      D+   TI+++N      
Sbjct: 1107 IIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKDFNRPMEED 1166

Query: 109  --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                 L       G GLNL    N ++   L W+        E   V R  + G  R V 
Sbjct: 1167 KSPRCLLMSLKCGGVGLNL-CIANHVICLDLAWNAAT-----ENQAVDRAHRIGQTREVV 1220

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ L+ +NTID+ +++  + K  + D  +  
Sbjct: 1221 VHRLVVENTIDQRLMELQQQKQALSDGAMGE 1251


>gi|219115127|ref|XP_002178359.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410094|gb|EEC50024.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 535

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 62  IIEKANAAPIIVAYHFN-------------SDLARLQKAFPQGRTLDKDPCTIQEWN-EG 107
           +  + +    ++   F                 +             +     +E+N   
Sbjct: 368 LYCEDDHTKCLIFAQFIQSLDVVEKLLFKPHIPSLKYLRLDGRVPARRRYAIAEEFNRND 427

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I +L       G GLNL  G + ++F    ++        +   + R  + G K+AV V
Sbjct: 428 EIKVLLLTTRVGGLGLNLT-GADTVIFLEHDFNP-----FADLQAMDRVHRIGQKKAVCV 481

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           Y L+  ++ID+ +++    K  + + ++NA       +
Sbjct: 482 YRLVLVDSIDQRIMKLQEKKLAMSEAIVNADNSTMFSM 519


>gi|68485451|ref|XP_713403.1| hypothetical protein CaO19.13120 [Candida albicans SC5314]
 gi|68485546|ref|XP_713356.1| hypothetical protein CaO19.5675 [Candida albicans SC5314]
 gi|46434839|gb|EAK94239.1| hypothetical protein CaO19.5675 [Candida albicans SC5314]
 gi|46434887|gb|EAK94286.1| hypothetical protein CaO19.13120 [Candida albicans SC5314]
          Length = 1102

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 32/218 (14%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HD 53
               +     +    ++       +  +  +  +    +  + +   +             
Sbjct: 867  KTVKEHNMTEFLIFDMLHIQKL-EMSQVQKFCSQHYQHKIKSNQTLIREFIKRDNGFESS 925

Query: 54   EKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
             KI     +I +         +IV   F S    +                         
Sbjct: 926  AKIHKCLEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNN 985

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             I+E+ +    +L     +   GL L    N +     +W+       +E   + R  + 
Sbjct: 986  VIKEFYQSSKNVLLLSLRAGNAGLTLT-CANHVFIMDPFWNP-----FVEEQAMGRAHRI 1039

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R VFV+ ++   T++  +++   +K  + +  L+ 
Sbjct: 1040 GQTREVFVHRVLIAGTVENRIMELQESKKHLIESALDE 1077



 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 10/171 (5%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI-----KALE 60
           + Q+     L      A  + +  ++  Q    +   +  ++  +V D +       +  
Sbjct: 714 RVQKAAKKILGEHTKNAP-ALTLLLRLRQACCHSYLVEIGEYRAKVKDSEAEASASNSKL 772

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
                 N A  +         + +     +G   +   C +   N      L       G
Sbjct: 773 DWRSMLNNARNLKESVKQQVHSLIGSLNGEGNIENTPACPVCFDNIDIESSLLI----FG 828

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
              ++   G    FF      ++  +   RIG  +  Q   K      +LI
Sbjct: 829 ECGHIICKGCCNTFFENCNAGDDDDESPHRIGECKDCQKTVKEHNMTEFLI 879


>gi|195341840|ref|XP_002037513.1| GM18271 [Drosophila sechellia]
 gi|194132363|gb|EDW53931.1| GM18271 [Drosophila sechellia]
          Length = 1420

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   +  +    + E+N    + L      +   G+NL  G N ++ F   W+   
Sbjct: 825 YFRLDGSTSSQERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNP-- 881

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +   V R  + G  +  FVY ++    +++ +  R   K  + D +++    E
Sbjct: 882 ---CHDTQAVYRIYRYGQTKPCFVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDECNPE 936


>gi|194743128|ref|XP_001954052.1| GF18082 [Drosophila ananassae]
 gi|190627089|gb|EDV42613.1| GF18082 [Drosophila ananassae]
          Length = 1314

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 25/186 (13%)

Query: 25   SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLAR 83
                 ++ LQ        +       V  + +++L+VI    +        Y F  D+  
Sbjct: 897  KLVILLRLLQQC------EAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGD 950

Query: 84   LQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNI 131
             +  +  G+   +              +++N     +  L      + G G+NL    N 
Sbjct: 951  FKGCWTIGKDYFRLDGSCSVEQREAMCKQFNNLTNLRARLFLISTRAGGLGINLTA-ANR 1009

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +R   K    
Sbjct: 1010 VVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATA 1064

Query: 192  DLLLNA 197
              +++ 
Sbjct: 1065 KRVIDE 1070


>gi|154338886|ref|XP_001565665.1| helicase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062717|emb|CAM39160.1| putative helicase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 974

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP------- 89
           A     +         K++ L+ ++ +  A     ++  +F + L  L+           
Sbjct: 486 AAGVPMDAAHLIDPSAKMRYLDTLLPQLKAQGHRCLIFSNFTTTLDLLEAVCQLRGHSYE 545

Query: 90  ---QGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +    +  +N       L      + G G+ L  G + ++ F   ++ +  
Sbjct: 546 RLDGSCNRVERELAMLRYNHPASSCFLFLVTTTAGGVGVTLT-GADTVILFDAHFNPQL- 603

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +R    R  + G  R V VY L  Q TI+E +      K+ + D ++   ++
Sbjct: 604 ----DRQAADRAHRIGQTRVVRVYRLCLQGTIEEHIRDIAARKAYLGDFIVEGGQR 655


>gi|330804383|ref|XP_003290175.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
 gi|325079732|gb|EGC33319.1| hypothetical protein DICPUDRAFT_98599 [Dictyostelium purpureum]
          Length = 1134

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 66/232 (28%), Gaps = 45/232 (19%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y  F       L      +    +      ++ +     +EE        E  + L 
Sbjct: 589 IKLYQMFLESDEVKLALNKTTSP--LAALTVLKKICDHPHLLNEEMKTLSGEGEMKQFLN 646

Query: 61  VII------------------------EKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
            +I                           +   +++       L   +           
Sbjct: 647 EVIDNLSLKTLVTNSGKFQLLLKLLPNLHTDGHRLLMFSQSVKMLDDFESVLDFLKLKYL 706

Query: 91  -----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                  +  K    I  +N +               GLNL    + ++ F   W+    
Sbjct: 707 RIDGSISSTKKRQEIIDLYNTDHSYFAFIMTIQVGALGLNLTS-ADRVLIFDPSWN---- 761

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              I+   V R  + G KR V VY LI   TI+E + ++   K ++   +LN
Sbjct: 762 --TIDNQAVDRAYRIGQKRDVVVYRLITCGTIEEKIYRKQVFKGSLMKTMLN 811


>gi|297849474|ref|XP_002892618.1| hypothetical protein ARALYDRAFT_471244 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338460|gb|EFH68877.1| hypothetical protein ARALYDRAFT_471244 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1227

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 17/149 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPL 111
            + K      IV   +   L  L+          +              ++++N   ++ +
Sbjct: 1067 LVKVVGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVRDFNTLPEVSV 1126

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     +   GLN+    + ++   LWW+        E   + R  + G  R V V    
Sbjct: 1127 MIMSLKAASLGLNMVAACH-VIMLDLWWNPTT-----EDQAIDRAHRIGQTRPVKVVRFT 1180

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             ++T+++ +L   + K  +        +K
Sbjct: 1181 VKDTVEDRILALQQRKRMMVASAFGEHEK 1209


>gi|326478019|gb|EGE02029.1| chromatin remodeling complex subunit Chd3 [Trichophyton equinum CBS
            127.97]
          Length = 1412

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 31/206 (15%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIE 64
            +  E  N  +  ++  +       Y +    + V+   +                 +   
Sbjct: 943  KQSERHNLNNILMQLRKCLCHPFVYSKAIEDRGVNSTLLHRNMVEASAKLQLLELLLPKL 1002

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F   L  ++                 T  K    I  +N         
Sbjct: 1003 QERGHRVLIFSQFLDFLDIVEDFLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAF 1062

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    + ++     ++  +     +   ++R  + G K+ V V+ L+ 
Sbjct: 1063 LLSTRAGGVGINL-ATADTVIILDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMT 1116

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNAL 198
            + + +E ++Q  + K  +  +L+  +
Sbjct: 1117 RGSAEEKIMQIGKKKMALDHVLIERM 1142


>gi|321252272|ref|XP_003192348.1| hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
 gi|317458816|gb|ADV20561.1| Hypothetical protein CGB_B6660W [Cryptococcus gattii WM276]
          Length = 1283

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 21/151 (13%)

Query: 62   IIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGK--- 108
            IIE+  +  IIV   F   +                +      D+   TI+ +N      
Sbjct: 1113 IIEQDPSQKIIVFSQFVEYIDLCSIFLRRRNIPHAKYVGSMKQDEREDTIKNFNRPMEED 1172

Query: 109  --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                 L       G GLNL    N ++   L W+        E   V R  + G  R V 
Sbjct: 1173 KSPRCLLMSLKCGGVGLNL-CIANHVICLDLAWNAAT-----ENQAVDRAHRIGQTREVV 1226

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V+ L+ +NTID+ +++  + K  + D  +  
Sbjct: 1227 VHRLVVENTIDQRLMELQQQKQALSDGAMGE 1257


>gi|308497648|ref|XP_003111011.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
 gi|308242891|gb|EFO86843.1| hypothetical protein CRE_04804 [Caenorhabditis remanei]
          Length = 966

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 31  KCLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
           K  QL        +    +E+     K + L+ ++ +       +++   F S L  L+ 
Sbjct: 727 KIHQLCEKFRCTSKFLLNEELALKSGKCEQLDKMLPEIQKKGDKVLIFSQFTSMLDILEV 786

Query: 87  AFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    K              I E+N    + +      + G G+NL    N ++  
Sbjct: 787 YLNIRGYSYKRLDGQTPVLDRQEMINEFNISKDLFVFLLSTKAGGLGINLTS-ANHIIIH 845

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G +++V V  L+++ T++  +L   + K  ++  + 
Sbjct: 846 DIDFNP-----YNDKQAEDRCHRMGQEKSVHVTRLVSKCTVEIGMLALAKKKLQLEKQVT 900

Query: 196 NALKKE 201
           + +K +
Sbjct: 901 DGVKGQ 906


>gi|171915261|ref|ZP_02930731.1| helicase, Snf2 family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 914

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            L   ++     A    +    AN     D++        +++  L   +       II+
Sbjct: 587 FLSEMDLLRLQKALLMARMS--ANSTYLVDKQSPGFSSKLDRLAELLEALSAEPERKIIL 644

Query: 74  AYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
              + + L  ++    + +             K    + E+    K  +      +   G
Sbjct: 645 FTEWTTMLNLIEPILERLKMDFVRLDGQVAQKKRQALVSEFQGNPKCRVFL-TTNAGSTG 703

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNLQ   + ++   L W+    +Q I R       + G KR V V+ L+ + TI+E +L 
Sbjct: 704 LNLQA-ADTVINVDLPWNPALLEQRIAR-----AHRMGQKRKVQVHLLVTEGTIEENLLA 757

Query: 183 RLRTKSTIQDLLLN 196
            L  K  +   +L+
Sbjct: 758 TLGAKHELASAVLD 771


>gi|71995707|ref|NP_503012.2| hypothetical protein Y116A8C.13 [Caenorhabditis elegans]
 gi|34556097|emb|CAB55149.2| C. elegans protein Y116A8C.13a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 833

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 46/214 (21%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE-------------------------VHDEKIKAL 59
           + S      QLAN      +    K                              K+ AL
Sbjct: 463 ALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTAL 522

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE- 106
             +I+         ++  ++   L  +Q+                 +      ++ +N+ 
Sbjct: 523 VDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDH 582

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G + LV F   W+    QQ + RI      + G  R  
Sbjct: 583 RDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----RDGQVRPC 636

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 637 HIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 669


>gi|156036384|ref|XP_001586303.1| hypothetical protein SS1G_12881 [Sclerotinia sclerotiorum 1980]
 gi|154698286|gb|EDN98024.1| hypothetical protein SS1G_12881 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1207

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR----------LQK 86
             +   + K    +   K+ AL  ++   K N   +++   F+  L               
Sbjct: 952  CIKSFDVKKNAWMDSGKVSALVELVTKYKENGDRVLIFSQFSLVLDILESVLNTTKITYT 1011

Query: 87   AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +D+    I+ + +   I        + G G+NL Y  N ++ F   ++ ++  
Sbjct: 1012 RIDGSTKIDERQAYIERFRDDADITAFLLTTKAGGTGINLMY-ANKVIIFDGSFNPQD-- 1068

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               +     R  + G  R V V  L+ + TI+E + +  R+K  +   +
Sbjct: 1069 ---DVQAENRAHRVGQTRDVEVVRLVTKGTIEEAIWKMGRSKLMLDGRV 1114


>gi|326427538|gb|EGD73108.1| nucleotide excision repair protein [Salpingoeca sp. ATCC 50818]
          Length = 865

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
              KI+AL   +    +       I+   F   L  L+    +G           +    
Sbjct: 692 SSTKIEALLEELTALQSDTHCIKSIIFSQFTQFLDLLEWRLQRGGIRCVKLDGRMSPASR 751

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I  +N + +I +      + G  LNL    + +     WW+        E   + R 
Sbjct: 752 AAVIDAFNTKPEITVFLISLKAGGLALNLTA-ASRVYITDPWWNP-----CAEAQAMDRI 805

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V V  LI +N+I+  + Q    K  + +  + 
Sbjct: 806 HRLGQNRPVEVRRLIIENSIESRIDQLQEKKRLLFESTVG 845


>gi|325188450|emb|CCA22986.1| hypothetical protein SELMODRAFT_450747 [Albugo laibachii Nc14]
          Length = 1623

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
                +K   +    K++ L V++ +        ++     S L  L++            
Sbjct: 869  MSFPDKKLVQFDCGKLQELAVLLCRLRREGHRCLIFTQMTSMLNILEQFLNLHGHTYFRL 928

Query: 96   -------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   K    ++++N +  I        S G G+NL  G + ++F+   W+       
Sbjct: 929  DGSTRVEKRQMLMEKFNQDSSIFCFILSTRSGGLGINLT-GADTVIFYDSDWNPA----- 982

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++     R  + G  R V +Y L+  +T+++ +L++ + K  ++ L++
Sbjct: 983  MDAQAQDRAHRIGQTREVHIYRLVTLSTVEDNILRKAQQKRNLETLVM 1030


>gi|145348183|ref|XP_001418535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578764|gb|ABO96828.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1326

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 68/229 (29%), Gaps = 43/229 (18%)

Query: 4   YHKF-QRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-------- 53
           Y    + +++  L+G  +       + +++  ++ N     D  +               
Sbjct: 546 YRALYENQIHVLLEGSKVKSVPQLRNLSMELRKVCNHPFLCDGLEEDYTNKRLAACAEKG 605

Query: 54  EKIKALEVIIEK----------------ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           ++      ++ +                 +   +++   F   L  +Q          + 
Sbjct: 606 DQPPNALQLLVEGSGKMGLLAKLLAKLKRDGHKVLIFSQFTMVLDLIQDFMNASGHETER 665

Query: 98  ----------PCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        I  +N             + G G+ L    +  + F   W+ +    
Sbjct: 666 LDGNTSAENRQAGIDRFNTPGAGFAYLLSTRAGGMGITLTS-ADTAIIFDSDWNPQN--- 721

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +   + R  + G  + V VY  I ++T ++ + +    K  + + +L
Sbjct: 722 --DLQAMARCHRIGQTKEVKVYRFITKDTYEQSLFETASRKYGLDEAIL 768


>gi|145496081|ref|XP_001434032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401154|emb|CAK66635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1103

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               +I  +      I+  +         +   Q +  D+     +     KI        
Sbjct: 881  WRVLIFCQMTRMLDILEEYMLHKGYTYFRMDGQCQINDRRDMVNEFQQNDKIFAFLLSTR 940

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+ L    + ++F+   W+       ++     R  + G  + V+VY LI + TI+
Sbjct: 941  AGGLGITLTQ-ADAVIFYDNDWNPT-----MDAQATDRAHRIGRTKDVYVYRLITKGTIE 994

Query: 178  ELVLQRLRTKSTIQDLL 194
            E +++R + K  +Q  +
Sbjct: 995  ERIVKRAQQKQNVQSTV 1011


>gi|332024392|gb|EGI64590.1| TATA-binding protein-associated factor 172 [Acromyrmex echinatior]
          Length = 1888

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                                   +  +N +  I +L       G GLNL  G + ++F  
Sbjct: 1695 THLPTVTYLRLDGSVPAAHRHSVVTRFNADPSIDVLLLTTQVGGLGLNLT-GADTVIFVE 1753

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G K+ V VY LI ++T++E ++   + K    + +++
Sbjct: 1754 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLTANTIIS 1808


>gi|290998113|ref|XP_002681625.1| predicted protein [Naegleria gruberi]
 gi|284095250|gb|EFC48881.1| predicted protein [Naegleria gruberi]
          Length = 489

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 52  HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPC 99
              KI AL   +         +V   + S L               +   + +  D+D  
Sbjct: 251 SSSKIGALIEKLRVLELGTKSVVFSQWTSMLDLVEVALEKSNIKFVRLDGKMQRKDRDDA 310

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +   +  I +        G GLNL +    +     WW+       IE   + R  + 
Sbjct: 311 VQKFKFDPHIQVCLISLKVGGTGLNLVW-ATHVFLLDPWWNPA-----IEEQAIDRVHRI 364

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V V+  + +++++E +L   ++K+ I +  LN
Sbjct: 365 GQDKPVTVFRFVVKDSVEERILSLQKSKTKIANEALN 401


>gi|289613402|emb|CBI59655.1| unnamed protein product [Sordaria macrospora]
          Length = 1346

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
            ++  +       Y +    + +              K+  LEV++ K       +++  
Sbjct: 795 LMQLRKCLCHPFVYSQSIEDRNLSPEVSKRNLVEASSKLLLLEVMLPKLRERGHRVLMFS 854

Query: 76  HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
            F   L  L+          +              I  +N     L        + G G+
Sbjct: 855 QFLDQLTILEDFLASMNLPYERLDGSHSGMEKQKRIDAFNAPDSKLFCMLLSTRAGGVGI 914

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++     W+  +     +   ++R  + G ++ V  + L+  ++ +E +LQ 
Sbjct: 915 NL-ATADTVIILDPDWNPHQ-----DIQALSRAHRIGQQKKVLCFQLMTVDSAEEKILQI 968

Query: 184 LRTKSTIQDLLLNAL 198
            R K  +  LL+  +
Sbjct: 969 GRKKMALDHLLIETM 983


>gi|145338703|ref|NP_188552.3| ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|112419506|dbj|BAF03042.1| Rad54 [Arabidopsis thaliana]
 gi|116518260|gb|ABJ99465.1| RAD54-like protein [Arabidopsis thaliana]
          Length = 910

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 58/234 (24%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------------ 44
           +    D   +        +      +L N      +                        
Sbjct: 460 KRALADNAKQT----KVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMF 515

Query: 45  ----------EKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
                     +  W E+  +      ++  + +     I++  ++   L    +   +  
Sbjct: 516 SGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERR 575

Query: 91  --------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     T+ K    +   N+             + G GLNL  G N LV F   W+
Sbjct: 576 YPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWN 634

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                   ++    R  + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 635 PAN-----DKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|71754507|ref|XP_828168.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|70833554|gb|EAN79056.1| DNA repair protein, putative [Trypanosoma brucei]
          Length = 984

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 49  KEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
           K +   K+ A+   I        +IV   F   L  +Q    +             L + 
Sbjct: 811 KPLRGTKLDAITEYICSIPEEEKVIVFSQFGDTLDLIQLWLQKVKVKTVKLVGSLMLSQR 870

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ + ++  +  +     + G GLNLQ   N +V    WW+              R 
Sbjct: 871 QAVLRAFLHDKSVRAILISLKAGGEGLNLQ-IANHVVLVDPWWNPAVEM-----QAAQRA 924

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  R V V   + + +++E +L+    K  + +  ++ 
Sbjct: 925 HRIGQTRPVRVVRFVTERSVEERMLELQEKKMLVIEGTIDG 965


>gi|299470303|emb|CBN78353.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1972

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/201 (10%), Positives = 61/201 (30%), Gaps = 31/201 (15%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKI 56
            + E+   ++ E+       +  V   +  N      + +                   K+
Sbjct: 1218 EDEMAAVVKREDEHYQKLMTLLVHLRKACNHPHMLVDVERSVGETESQTVDYTVAASGKL 1277

Query: 57   KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEW 104
              L+ ++ +        ++   F S L  LQ                          + +
Sbjct: 1278 ALLDRMLPRLQAKGHRCLILSQFASMLDILQDLCLARGYEHGRLDESTSSPQTRLDARRF 1337

Query: 105  NEGKIPL---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            N  +  +   L     +   G       + ++ +   W+ +     ++   + R  + G 
Sbjct: 1338 NAPESKVSVLLVPTRMTGASGGLNLTAADTVILYDSHWNPQ-----VDLQAIERVHRIGQ 1392

Query: 162  KRAVFVYYLIAQNTIDELVLQ 182
             + V V+ L+ + +++E ++ 
Sbjct: 1393 SKPVKVFRLLCRRSVEERIVA 1413


>gi|294659015|ref|XP_002770883.1| DEHA2F23188p [Debaryomyces hansenii CBS767]
 gi|218511864|sp|Q6BKC2|SWR1_DEBHA RecName: Full=Helicase SWR1
 gi|202953552|emb|CAR66400.1| DEHA2F23188p [Debaryomyces hansenii]
          Length = 1616

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQG 91
              +K   +    K++ L  +++   AN    ++       L            +     G
Sbjct: 1321 FPDKSLLQFDCGKLQKLATLLQDLTANGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDG 1380

Query: 92   RTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +D   +  +   + KIP+      S G G+NL  G + ++F+   W+       ++
Sbjct: 1381 ATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPA-----MD 1434

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +    R  + G  R V +Y  +++ TI+  +L++   K  + ++++   +
Sbjct: 1435 KQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGE 1484


>gi|83770096|dbj|BAE60231.1| unnamed protein product [Aspergillus oryzae]
          Length = 777

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I  + N   +
Sbjct: 615 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQKSIDFFMNNVDV 674

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 675 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 728

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 729 LCIEDSVESRIVLLQEKKANLINGTINKDQGEALE 763


>gi|224013540|ref|XP_002296434.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968786|gb|EED87130.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1089

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 31/216 (14%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y +        +       +     +   +  +L       +++       D+   + 
Sbjct: 653 ELYREISNRASRSIGSIRGRDDNDTPLTLLTEVRKLCTHPSLLNKDDSSLSASDDASLSG 712

Query: 60  EVII---------EKANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPC 99
           ++I+         E      +I+  +F + L                             
Sbjct: 713 KLIVLSSLIESIREHHPTDKVIITSNFTTALTVVENSILRKKNLPFIRLDGSVDNASRQP 772

Query: 100 TIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +  +N   +           + G GLNL  G N L+     W+    QQ++ R+     
Sbjct: 773 IVDSFNNNSVNHSFAFTLSSKAGGCGLNL-IGANRLIMVDADWNPATDQQVMARV----- 826

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G K+  ++Y +    T++E++ QR   K  +  
Sbjct: 827 YRQGQKKPCYIYRMFTTGTVEEVIFQRQTQKGNLAK 862


>gi|317138165|ref|XP_001816719.2| chromatin remodeling complex subunit (Chd3) [Aspergillus oryzae
           RIB40]
          Length = 1230

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 70/209 (33%), Gaps = 31/209 (14%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEK----------IKALEVIIE 64
           +  E  N  +  ++  +       Y    EE+        K          +  L +   
Sbjct: 676 KQAERQNLNNILMQLRKCLCHPFIYSTAIEERTNNATASHKHLVEAAGKLQLLQLMLPKL 735

Query: 65  KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL-- 112
           +     +++   F  +L  ++                 +  +    I ++N    P    
Sbjct: 736 RERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMIDQYNAQDSPYFAF 795

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G G+NL    + ++     ++  +         ++R  + G K  V V+ L+ 
Sbjct: 796 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMT 849

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + + +E ++Q  + K  +  +L++ +  E
Sbjct: 850 RGSAEEKIMQIGKKKMVLDHVLIDRMVSE 878


>gi|301096537|ref|XP_002897365.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107056|gb|EEY65108.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 612

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       K    IQ +     P+  L     +   G+NL    N LV F + W+ 
Sbjct: 417 WFLQIDGSTHGSKRMEYIQRFTSPDSPVKLLLVSTRAGAEGINLHA-ANRLVLFDVSWNP 475

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                  +   + R  + G  + V VY L++  T++  + ++   K  +   ++++ ++
Sbjct: 476 SN-----DHQSMCRSHRIGQAKTVHVYRLVSTGTMERRIYEQQMKKVDLSTSVVDSHER 529


>gi|115734945|ref|XP_001199537.1| PREDICTED: similar to HELLS protein, partial [Strongylocentrotus
           purpuratus]
 gi|115902055|ref|XP_792190.2| PREDICTED: similar to HELLS protein, partial [Strongylocentrotus
           purpuratus]
          Length = 132

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F    +          +L+     ++E+N    + L      + G G+NL    + ++ +
Sbjct: 17  FCHMRSHQYCRLDGTTSLEDRQERMKEFNSNPDVFLFLLSTRAGGLGINLTA-ADTVIIY 75

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+ +      +     R  + G  + V +Y L+  NTID+ +++R   K  ++ +++
Sbjct: 76  DSDWNPQS-----DLQAQDRCHRIGQTKPVVIYRLVTANTIDQRIVERAAAKRKLEKMVI 130

Query: 196 N 196
           +
Sbjct: 131 H 131


>gi|17540630|ref|NP_502137.1| hypothetical protein F54E12.2 [Caenorhabditis elegans]
 gi|3873712|emb|CAA97421.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3877578|emb|CAB05213.1| C. elegans protein F54E12.2, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1091

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              KIK    I+         +++   + S L  ++                         
Sbjct: 916  SCKIKNTLEIVENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQER 975

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++    A+ G GLNL  GGN LV   L W+    QQ  +RI      +
Sbjct: 976  VDSFNREKGGARVMLLSLAAGGVGLNLT-GGNHLVMVDLHWNPALEQQAFDRI-----YR 1029

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G K+ VF++ L+ + TI++ V+   + K  +   +L+ 
Sbjct: 1030 MGQKKDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDG 1068


>gi|320162753|gb|EFW39652.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1169

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE--GKIP 110
            +++  +  I+V   + S L  L+ A  +                    I+E+     +  
Sbjct: 1002 LKEDPSLKILVFSQWTSMLDLLEPALQEAHIFFSRFDGSMSMREKDNVIREFGHLRSQTR 1061

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            ++         GLNL    + +     W        M E   + R  + G  R V V  L
Sbjct: 1062 VMLCSLKCTSMGLNLT-MASRVFIVGTWTAP-WWNPMQEEQAIDRVHRIGQMREVIVERL 1119

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  +T++E VL   + K  + + +L+ 
Sbjct: 1120 VIPDTVEERVLLLQQNKQMLANAVLDE 1146


>gi|312374254|gb|EFR21844.1| hypothetical protein AND_16270 [Anopheles darlingi]
          Length = 476

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 63/186 (33%), Gaps = 28/186 (15%)

Query: 32  CLQLANGAVYYDEEKHW--------KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
             Q+A         +             +  K+  L+ ++ K     + +++   F + L
Sbjct: 189 LRQVALHPFLIPSTESTDSSLVTPEIVSYSPKMIVLDALLAKLFERGSRVLIFSQFVTML 248

Query: 82  ARL----------QKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGG 129
             L                          I ++N  K    +      + G G+NL +  
Sbjct: 249 QILADYLDWRGYNYCMLDGSSDFADRKEQIDDFNRPKSDRFVFLLSTRAGGLGINL-FTA 307

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++F+ + ++ +     ++     R  + G K  V +  +I + TIDE +      K  
Sbjct: 308 DTVIFYDMDYNPQ-----MDYQAEDRAHRIGQKHQVHIIRMIVRGTIDESLHAITEQKKQ 362

Query: 190 IQDLLL 195
           + + ++
Sbjct: 363 LDESII 368


>gi|242208815|ref|XP_002470257.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730707|gb|EED84560.1| predicted protein [Postia placenta Mad-698-R]
          Length = 813

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +R        E++E    A       QL     Y   +  + +    K+    +    A 
Sbjct: 596 RRGAVFRFVKEDMEVMTDAEL-----QLFCATKYLQPDDCYLQAGKVKVLLQLLERYHAE 650

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGK-IPLLFAHP 116
              +++   F   L  LQK   +                    + E+ + + I +     
Sbjct: 651 GRRVLIFSQFTQILDILQKVLEKEGIRFSLLTGATPVDARQSLVDEFTDDESISVFLLST 710

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NL    ++++ F   ++        ++    R  + G K+ V V  LI + +I
Sbjct: 711 KAGGMGINLTA-ASVVIMFDQDFNP-----HNDKQAQDRAYRIGQKQDVDVVKLITKGSI 764

Query: 177 DELVLQRLRTKSTIQDLL 194
           +E +L   +TK  + + +
Sbjct: 765 EEDMLALGQTKLALDEAV 782


>gi|241707025|ref|XP_002412008.1| steroid receptor-interacting snf2 domain protein, putative [Ixodes
           scapularis]
 gi|215505018|gb|EEC14512.1| steroid receptor-interacting snf2 domain protein, putative [Ixodes
           scapularis]
          Length = 1055

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 7/122 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             R         +  +    I E+N    + L      +   G+NL  G N +V     W
Sbjct: 631 RGRNYFRLDGSTSAQEREKLINEYNANAGVSLFLLSTRAGCLGINLT-GANRIVVLDASW 689

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        +   V R  + G  +   +Y L+  N +++ +  R   K  + D +++ + 
Sbjct: 690 NP-----CHDAQAVCRIYRYGQAKPCHIYRLVCDNCLEKRIYDRQVNKQGMSDRVVDEMN 744

Query: 200 KE 201
            E
Sbjct: 745 PE 746


>gi|67528132|ref|XP_661876.1| hypothetical protein AN4272.2 [Aspergillus nidulans FGSC A4]
 gi|40739750|gb|EAA58940.1| hypothetical protein AN4272.2 [Aspergillus nidulans FGSC A4]
 gi|259481113|tpe|CBF74347.1| TPA: DNA excision repair protein Rad16, putative (AFU_orthologue;
           AFUA_7G03820) [Aspergillus nidulans FGSC A4]
          Length = 849

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 +  +   +I  + N   +
Sbjct: 687 KLRSKKQTLKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMSPAQRQKSIDYFMNNVNV 746

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 747 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 800

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 801 LCIEDSVESRIVMLQEKKANMINGTINKDQGEALE 835


>gi|320580465|gb|EFW94687.1| hypothetical protein HPODL_3059 [Pichia angusta DL-1]
          Length = 1575

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 51   VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
                KI+AL   + K          IV   F S L  ++    +            T  +
Sbjct: 1400 KSSTKIEALMEELYKSRSDRQTVKSIVFSQFTSMLDLVEWRLKRAGFSIAKLQGSMTPIQ 1459

Query: 97   DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                IQ +     + +      + G  LNL    N +     WW+              R
Sbjct: 1460 RDSVIQHFMTNPSVEVFLVSLKAGGVALNL-VEANQVFILDSWWNPALDTG----QAADR 1514

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  R + +  L+ +++I+  +++  + K+ +    L+
Sbjct: 1515 IHRIGQHRPIRIVKLVIEDSIESRIIELQQKKADMVKATLD 1555


>gi|321265109|ref|XP_003197271.1| DEAD/DEAH box helicase involved in nucleotide-excision repair
           [Cryptococcus gattii WM276]
 gi|317463750|gb|ADV25484.1| DEAD/DEAH box helicase involved in nucleotide-excision repair,
           putative [Cryptococcus gattii WM276]
          Length = 804

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 53  DEKIKALEVIIEKA-----NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDK 96
             KI+ L  ++ +      N    IV   F S L               +     R   +
Sbjct: 621 SAKIRMLLKLLSEIDEKSGNKEKTIVFSQFTSFLDLVEPYLKKYSIKYVRYDGSMRNDHR 680

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +  ++ K  ++     +   GLNL    N ++   LWW+        E     R 
Sbjct: 681 QESLAKIRDDSKTRVILISFKAGSTGLNLT-CCNNVILMDLWWNPAL-----EDQAFDRA 734

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K  V ++ L  + T+++ +L    +K  + +  L+    + +
Sbjct: 735 HRLGQKLDVNIWKLTIEETVEDRILILQNSKRDLANAALSGQTGKGV 781


>gi|162464313|ref|NP_001105087.1| chromatin complex subunit A101 [Zea mays]
 gi|18463957|gb|AAL73042.1|AF461813_1 chromatin complex subunit A101 [Zea mays]
          Length = 779

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIE--KANAAPIIVAYH 76
             ++  +  N     +       ++           K +  + ++    A    ++V   
Sbjct: 500 LMIQLRKNCNHPDLLESPVDSTGLYPPVEKLLEQCGKFQLFDRLLNFLMAQKHKVLVFSQ 559

Query: 77  FNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLN 124
           +   L  ++                  L++    I E+N+    + +      + G G+N
Sbjct: 560 WTKVLDIIEYYLDSKGHAVCRIDGNVKLEERRRQIAEFNDVNSSMRIFLLSTRAGGLGIN 619

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +++R 
Sbjct: 620 LTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRMIKRA 673

Query: 185 RTKSTIQDLLLN 196
             K  ++ +++ 
Sbjct: 674 FGKLKLEHVVIG 685


>gi|164448642|ref|NP_001106734.1| chromodomain-helicase-DNA-binding protein 1 [Bombyx mori]
 gi|269969346|sp|A9X4T1|CHD1_BOMMO RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
           Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
 gi|89213694|gb|ABD64154.1| CHD1 [Bombyx mori]
          Length = 1365

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 40/224 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++     ++G      N     ++  +  N A+    E            A+E 
Sbjct: 456 KNYSALRKG----VKGSINTFINI---VIELKKCCNHALLTKPEDFESRASLATSDAVEK 508

Query: 62  IIE---------------KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
           ++                K     +++       L  L +   +     +          
Sbjct: 509 LLRGSGKLLLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGEL 568

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + ++ F   W+ +      +     
Sbjct: 569 RKQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQA 622

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 623 RAHRIGQKNQVNIYRLVTARSVEEDIVERAKRKMVLDHLVIQRM 666


>gi|309366189|emb|CAP21805.2| hypothetical protein CBG_00336 [Caenorhabditis briggsae AF16]
          Length = 1062

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 22/198 (11%)

Query: 5   HKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+     L          +A ++ K   LA+    +   +    V    I+ L++I 
Sbjct: 625 KQAQKHTALLLAFDGPNMPRGAAKESGKLYALADMLKCFRMLQECTVVVSNYIETLDMI- 683

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGH 121
                   +    F  D             +      ++ +N+      +      + G 
Sbjct: 684 --EQLCAYLEFRVFRLDGK---------TQVQDRQKLVRNFNDQRDPSNIFLLSTKAGGV 732

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G + LV F   W+    QQ + RI      + G  R   +Y LI   TI+E +L
Sbjct: 733 GLNL-IGASRLVLFDSDWNPANDQQAMARIW-----RDGQVRPCHIYRLITTGTIEEKML 786

Query: 182 QRLRTKSTIQDLLLNALK 199
           QR   K+ +   +++A++
Sbjct: 787 QRQIKKTGL-GCVIDAIE 803


>gi|189197045|ref|XP_001934860.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187980808|gb|EDU47434.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1022

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 21/177 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
            Y        +   KI     ++ +          ++   F S L  ++    +     + 
Sbjct: 834  YMRRLDKTYIPSAKISRTIELLNEIRENDPTEKTLIFSQFTSLLDLVEVPLWREGIKYQR 893

Query: 98   -----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                              +     ++     +   GLNL    + ++    +W+      
Sbjct: 894  YDGSMKMDDRAEAVNLFMDNPNQNVMLVSIKAGNAGLNLWK-ASQVIILDPFWNP----- 947

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             IE   V R  +    R V V+ ++   T+++ ++     K  I    L+    + +
Sbjct: 948  FIEEQAVDRAHRMPQTREVHVHRILVPETVEDRIVLLQDKKREIIGDALDENASKRL 1004



 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 3/53 (5%), Positives = 10/53 (18%), Gaps = 7/53 (13%)

Query: 3   QYHKFQRELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHW 48
            Y   + +    +        G      +     ++  Q         +    
Sbjct: 572 IYKALEDKSQIFINKYLERGRGSTTNYASVLVVLLRLRQACCHPHLIKDLSQP 624


>gi|119192342|ref|XP_001246777.1| hypothetical protein CIMG_00548 [Coccidioides immitis RS]
          Length = 1432

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 41/235 (17%)

Query: 2    KQYH-------KFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G   +  E  N  +  V+  +       Y +    + V
Sbjct: 834  KLYKSILAKNPQLIKAIFKKTDGRSLKQSERHNLNNILVQLRKCLCHPFVYSKAIEERGV 893

Query: 52   HDEKIKALE-------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             D  +                 +   +     +++   F   L  ++             
Sbjct: 894  SDTLLYRNLVEASSKLQLLELLLPKLQERGHRVLLFSQFLDFLDIIEDFLDGLGVLHLRL 953

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +  +    I E+N    P  +      + G G+NL    + ++     ++  +   
Sbjct: 954  DGSLSSLQKQKRIDEFNAPNSPYFVFMLSTRAGGVGINL-ATADTVIIMDPDFNPHQ--- 1009

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +   ++R  + G  R V V+ L+ + T +E ++Q  R K  +   L+  +  E
Sbjct: 1010 --DIQALSRAHRIGQHRKVLVFQLMTKGTAEEKIIQIGRKKMALDQALIGFMDME 1062


>gi|224094755|ref|XP_002310223.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222853126|gb|EEE90673.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 754

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 29/215 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA---------VYYDEEKHWKEVHDEK 55
              +  L   +           +  V+  +               Y+            K
Sbjct: 449 KTLEGYLREKMDTGRGMKGRLTNLMVQLRKNCYHPDLLESAFDGSYFYPPVEQIVEQCGK 508

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQE 103
            + L+ ++ +       +++   +   L  +   F               LD+    I+E
Sbjct: 509 FRLLDKLLNRLFALKHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVNLDERKRQIEE 568

Query: 104 WNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +N+      +      + G G+NL    +  + +   W+ +     ++   + R  + G 
Sbjct: 569 FNDENSQYRVFLLSTRAGGLGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQ 622

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + V VY L    +I+  +L+R  +K  ++ +++ 
Sbjct: 623 TKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIG 657


>gi|171681928|ref|XP_001905907.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940923|emb|CAP66573.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1119

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 20/164 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPC 99
              KI+ L  I+  +A+    IV   F S L  ++                +     ++  
Sbjct: 898  SAKIRELLSILRKEAHEHKFIVFSQFTSMLDLIEPFLRSQPGMKAVRYDGKMPNDAREAA 957

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +    +L         GLNL      ++    +W+       +E   + R  + 
Sbjct: 958  LKALRTDPHTRILLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAIDRVHRL 1011

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKET 202
                 V VY L  Q+T++  +L+    K  + +  +   ++K+ 
Sbjct: 1012 TQTVDVIVYKLTVQDTVEARILELQNKKRMLAEATIEGGMRKKG 1055



 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 3/41 (7%)

Query: 4   YHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVY 41
           Y   +    +    +    I+  N+    ++  Q  N    
Sbjct: 565 YDALEARADKSLEKMMKGRIDYANALVLLLRLRQACNHPRL 605


>gi|74694070|sp|Q759G7|SWR1_ASHGO RecName: Full=Helicase SWR1
          Length = 1486

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               + A      LQ   G +          +   K +    +I       + +   F + 
Sbjct: 1200 TKLSIAFPDKSLLQYDCGKLQ----SLAVLLRRLKEEGHRALIFTQMTKVLDILEQFLNY 1255

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               L         ++      + +N + +I +      S G G+NL  G + ++F+   W
Sbjct: 1256 HGYLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLT-GADTVIFYDSDW 1314

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +++    R  + G  R V +Y   +++TI+  +L++   K  + ++++ 
Sbjct: 1315 NPA-----MDKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQ 1366


>gi|195489519|ref|XP_002092773.1| GE11484 [Drosophila yakuba]
 gi|194178874|gb|EDW92485.1| GE11484 [Drosophila yakuba]
          Length = 1671

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    + E+N  G + L      +   G+NL  G N ++ F   W+   
Sbjct: 1005 YFRLDGSTSSQERERLVNEFNANGNVKLFLISTRAGSLGINLT-GANRVIIFDASWNP-- 1061

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G  +  FVY ++    +++ +  R   K  + D +++    E
Sbjct: 1062 ---CHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVDECNPE 1116


>gi|149030549|gb|EDL85586.1| chromodomain helicase DNA binding protein 1-like (predicted)
           [Rattus norvegicus]
          Length = 530

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +        +        ++    I+ + +  I +      + G G+NL    + ++F  
Sbjct: 11  YMDYRGYSYERVDGSVRGEERHLAIKNFGKQPIFVFLLSTRAGGVGMNLTA-ADTVIFVD 69

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++ +      +     R  + G  ++V V  LI ++T++E+V ++  +K  + ++++ 
Sbjct: 70  SDFNPQN-----DLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIE 124

Query: 197 A 197
            
Sbjct: 125 G 125


>gi|115389076|ref|XP_001212043.1| DNA repair protein RAD16 [Aspergillus terreus NIH2624]
 gi|114194439|gb|EAU36139.1| DNA repair protein RAD16 [Aspergillus terreus NIH2624]
          Length = 963

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I  +     +
Sbjct: 801 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQKSIDYFMKNVDV 860

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 861 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 914

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 915 LCIEDSVESRIVLLQEKKANLINGTINKDQGEALE 949


>gi|47459148|ref|YP_016010.1| SWF/SNF family helicase [Mycoplasma mobile 163K]
 gi|47458477|gb|AAT27799.1| swf/snf family helicase-like protein [Mycoplasma mobile 163K]
          Length = 958

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 23/185 (12%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
                     +A+        K  K    EK+     +I+        +++   F  ++ 
Sbjct: 766 VLKAINHLKIIASSPF----VKSDKFDTSEKLNYCINLIKSIKLLKQKVLIFTQFTKNIP 821

Query: 83  RLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNI 131
             +K F +               +     + +NE   I +L     +   GLNL    N 
Sbjct: 822 FFEKNFIKSNIKYDIISGKTNKKERFKITEYFNESSDIDVLIISLRAGSLGLNLTS-ANN 880

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ + +WW+     Q +E   + R  + G KR V V+ LI ++TI+E V +    K  I 
Sbjct: 881 VILYDIWWN-----QSVESQAIDRVHRIGQKRGVNVFKLIMKDTIEEKVFELQSQKQKII 935

Query: 192 DLLLN 196
           D++L 
Sbjct: 936 DIVLE 940


>gi|309357491|emb|CAP35854.2| hypothetical protein CBG_18388 [Caenorhabditis briggsae AF16]
          Length = 995

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 31  KCLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQK 86
           K  QL        +    +E+  +  K + L+ ++ +       +++   F S L  L+ 
Sbjct: 745 KIHQLCERFRCTSKFLLNEELALNSGKCEQLDKMLPEIQNKGDKVLIFSQFTSMLDILEV 804

Query: 87  AFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                    K              I E+N    + +      + G G+NL    N ++  
Sbjct: 805 YLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTKAGGLGINLTS-ANHIIIH 863

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G ++ V V  L+++ T++  +L   + K  ++  + 
Sbjct: 864 DIDFNP-----YNDKQAEDRCHRMGQEKPVHVTRLVSKCTVEIGMLALAKKKLQLEKQVT 918

Query: 196 NALKKE 201
           + +K +
Sbjct: 919 DGVKGQ 924


>gi|310791236|gb|EFQ26765.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1012

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 21/171 (12%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR-------------LQK 86
           Y +      +   K +A   ++ K        I+   +   L                 +
Sbjct: 828 YTKYLSHHWLASSKTRACMDLLRKIQETGEKTIIFSQWTMLLDLLQVAIKKEGLGIKHCR 887

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +     +D        +  + ++     +   GLNL    + ++    +W+      
Sbjct: 888 YTGEMSMAQRDDTAFTFSTDADMKVMMVSLRAGNAGLNLVS-ASRVIIMDPFWNP----- 941

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            IE   V R  + G ++ V V+ ++ Q T+++ ++Q    K    D  L+ 
Sbjct: 942 YIEMQAVDRAHRIGQQKPVKVHRILTQETVEDRIVQLQEKKRATVDAALDE 992


>gi|302794729|ref|XP_002979128.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
 gi|300152896|gb|EFJ19536.1| hypothetical protein SELMODRAFT_110695 [Selaginella moellendorffii]
          Length = 851

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 51  VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
               KI AL  ++EK          +V   F++ L  ++    +          G +  K
Sbjct: 674 KPSAKINALISMLEKTRAKDPNIKSVVFSQFSTMLKLIEGPLQKAGFKFVKLEGGMSASK 733

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               ++ +     G   +      + G GLNL    + +     WW+       +E   +
Sbjct: 734 REENMEAFKSTRSGSPTVFLLSLKAAGVGLNLVT-ASNVFMMDPWWNPA-----VEEQAM 787

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  R V V+ LIA ++I+E +LQ    K     + L     E
Sbjct: 788 DRVHRLGQTRDVHVFRLIATDSIEERLLQVQEKKRAYAQIALGKEASE 835



 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 6/47 (12%)

Query: 3   QYHKFQRELY----CDLQGENIEAFNS--ASKTVKCLQLANGAVYYD 43
            Y K +++        L    +    +      ++  Q+ +      
Sbjct: 513 LYDKMEKDGRNMIRRFLDNGTVTKNYAVVLQMILRLRQICDHTSMCP 559


>gi|242047292|ref|XP_002461392.1| hypothetical protein SORBIDRAFT_02g001960 [Sorghum bicolor]
 gi|241924769|gb|EER97913.1| hypothetical protein SORBIDRAFT_02g001960 [Sorghum bicolor]
          Length = 778

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 67/192 (34%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIEK--ANAAPIIVAYH 76
             ++  +  N     + +     ++           K +  + ++         ++V   
Sbjct: 503 LMIQLRKNCNHPDLLEAQVDSIGLYPPVEKILEQCGKFQLFDRLLNYLIEQKHKVLVFSQ 562

Query: 77  FNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLN 124
           +   L  ++                  L++    I E+N+    + +      + G G+N
Sbjct: 563 WTKVLDIIEYYLDSKGHDVCRIDGSVKLEERRRQIAEFNDLNSSMRIFLLSTRAGGLGIN 622

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  ++++ 
Sbjct: 623 LTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRIIKKA 676

Query: 185 RTKSTIQDLLLN 196
             K  ++ +++ 
Sbjct: 677 FGKLKLEHVVIG 688


>gi|149537776|ref|XP_001520060.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
           partial [Ornithorhynchus anatinus]
          Length = 1799

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 60/217 (27%), Gaps = 41/217 (18%)

Query: 6   KFQRELYCDL---------QGENIEAFNSASKTVKCLQLANGAVYYD------------- 43
           + Q++L+  +                 +  +  +   +  N    +              
Sbjct: 682 QMQKKLWLFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGS 741

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
            +         K+  L+ +++K       +++       L  L+          +     
Sbjct: 742 YDGSSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGG 801

Query: 98  ------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                    I  +N              + G G+NL    + ++ +   W+     Q   
Sbjct: 802 ITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNPHNDIQ--- 857

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + +      G  + V +Y  + Q +++E + Q    
Sbjct: 858 -VSLNHTHSIGQNKNVMIYRFLTQASVEERITQIQDN 893


>gi|118089323|ref|XP_420137.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 1204

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 64/246 (26%), Gaps = 56/246 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------YDEEK 46
           K Y  F       ++       +  ++     +L +                   Y E+ 
Sbjct: 374 KIYRNFL--CLDHVKEVLTTTRSPLAELTVLKKLCDHPRLLSARACTQLDLDGQEYLEQD 431

Query: 47  HWKEV-------------------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL---- 81
           H  E                       K+  L  ++ +        +V       L    
Sbjct: 432 HESEAAVLSGANKIDHLSDETLIQESGKMLFLVGLLGRLREEGHRTLVFSQSRKMLDIIE 491

Query: 82  -----ARLQKAFPQGRTLD--KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                 + +     G      +    I  +       +        G G+ L    N +V
Sbjct: 492 RVLSSRQFKIMRIDGTVTHLTEREKRINAFQSNKDYSVFLLTTQVGGVGITLTA-ANRVV 550

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+        +   V R  + G K  V +Y LI   T++E + +R   K ++   
Sbjct: 551 IFDPSWNPAT-----DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLIRQ 605

Query: 194 LLNALK 199
                K
Sbjct: 606 TTGDKK 611


>gi|170579417|ref|XP_001894822.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158598445|gb|EDP36333.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 926

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 21/183 (11%)

Query: 34  QLANGAVYYDEEKHWKE--VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLAR------ 83
           QL +      +    +E  +   K++ L+ ++   K     +++   F S +        
Sbjct: 743 QLCSKFTSTQKFILNEEVALESGKLRELDKLLPSIKKKGDKVLIFSQFTSMMDILEVYLR 802

Query: 84  ----LQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         + +    I E+N    + +      + G G+NL    N ++   + 
Sbjct: 803 LRDYQYCRLDGSTPVMERQDVINEYNSSPDLFVFLLSTKAGGLGINLTA-ANHIILHDID 861

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++        ++    R  + G  + VFV  LI+ +T++E +L   + K  ++  +  A 
Sbjct: 862 FNP-----YNDKQAEGRCHRMGQTKEVFVVRLISADTVEEEMLALAQKKLELEKEVTGAS 916

Query: 199 KKE 201
             E
Sbjct: 917 TAE 919


>gi|156844645|ref|XP_001645384.1| hypothetical protein Kpol_534p5 [Vanderwaltozyma polyspora DSM 70294]
 gi|206557735|sp|A7TJI3|INO80_VANPO RecName: Full=Putative DNA helicase INO80
 gi|156116046|gb|EDO17526.1| hypothetical protein Kpol_534p5 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1556

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
              K+K L+ ++ +       +++ +     +  +++     +              +   
Sbjct: 1376 SAKLKKLDELLVELKKGDHRVLIYFQMTKMMDLMEEYLTYRQYSHIRLDGSSKLEDRRDL 1435

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                     I +      + G G+NL    + ++F+   W+       I+   + R  + 
Sbjct: 1436 VHDWQTRPDIFIFLLSTRAGGLGINLTA-ADTVIFYDSDWNPT-----IDSQAMDRAHRL 1489

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R V VY L+ + TI+E +  R + K  +Q +++  
Sbjct: 1490 GQTRQVTVYRLLIRGTIEERMRDRAKQKEHVQQVVMEG 1527


>gi|83764573|dbj|BAE54717.1| unnamed protein product [Aspergillus oryzae]
          Length = 1455

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 70/209 (33%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEK----------IKALEVIIE 64
            +  E  N  +  ++  +       Y    EE+        K          +  L +   
Sbjct: 901  KQAERQNLNNILMQLRKCLCHPFIYSTAIEERTNNATASHKHLVEAAGKLQLLQLMLPKL 960

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F  +L  ++                 +  +    I ++N    P    
Sbjct: 961  RERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMIDQYNAQDSPYFAF 1020

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S G G+NL    + ++     ++  +         ++R  + G K  V V+ L+ 
Sbjct: 1021 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMT 1074

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1075 RGSAEEKIMQIGKKKMVLDHVLIDRMVSE 1103


>gi|325183015|emb|CCA17469.1| hypothetical protein SELMODRAFT_162307 [Albugo laibachii Nc14]
          Length = 1363

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 31/222 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH------- 52
            Y          + G+     + ++     ++  +       ++ ++             
Sbjct: 510 LYKSLLLRDMDTITGKVGAGVSRSALQNIVMQLRKCCGHPYLFEGQEDRTLDPLGDHVVE 569

Query: 53  -------------DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
                          K +   V++       + +   F               + +    
Sbjct: 570 NCGKMVLLDKLLKKLKQRGSRVLLFTQMTRVLDIFEDFCRMRKYEYCRIDGRTSYEDRES 629

Query: 100 TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+ +N  +    +      + G G+NL Y  +I++ +   W+ +      +     R  
Sbjct: 630 AIEAYNELDSSKFVFLLSTRAGGLGINL-YTADIVILYDSDWNPQA-----DLQAQDRAH 683

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K+ V VY  +  ++++E +++R + K  +  +++   +
Sbjct: 684 RIGQKKEVNVYRFVTSDSVEEKIIERAQQKLKLDAMVVQQGR 725


>gi|195151315|ref|XP_002016593.1| GL10420 [Drosophila persimilis]
 gi|194110440|gb|EDW32483.1| GL10420 [Drosophila persimilis]
          Length = 1641

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +          +  +    + E+N   ++ L      +   G+NL  G N ++ F   
Sbjct: 974  TRSYSYFRLDGSTSSQERERLVNEFNANSQVKLFLISTRAGSLGINLT-GANRVIIFDAS 1032

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            W+        +   V R  + G  +  +VY ++    +++ +  R   K  + D +++  
Sbjct: 1033 WNP-----CHDTQAVYRIYRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDEC 1087

Query: 199  KKE 201
              E
Sbjct: 1088 NPE 1090


>gi|320582098|gb|EFW96316.1| helicase of the Snf2/Rad54 family [Pichia angusta DL-1]
          Length = 972

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ 85
           +  +     +  +   +  +       K++ +  +I K       ++V   F   L  L+
Sbjct: 780 ELNRLCHTYSKQLASFQLDNEAYYQSGKVRKMLQLINKVTEKGEKVLVFSLFTQVLDILE 839

Query: 86  KAFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                 +             +    I ++     +P++     + G G+NL    N ++ 
Sbjct: 840 MVLSLNQIKFLRLDGQTSVDERQGIIDKFYEADDVPVMLLSTKAGGFGINL-VCANNVII 898

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           F   ++  +     ++    R  + G  + V VY +I ++TI+E +LQ  + K  +
Sbjct: 899 FDQSFNPHD-----DKQAEDRAHRVGQTKEVNVYRIICRDTIEENILQLAQNKLQL 949


>gi|198458067|ref|XP_002138492.1| GA24365 [Drosophila pseudoobscura pseudoobscura]
 gi|198136210|gb|EDY69050.1| GA24365 [Drosophila pseudoobscura pseudoobscura]
          Length = 1651

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              +          +  +    + E+N   ++ L      +   G+NL  G N ++ F   
Sbjct: 974  TRSYSYFRLDGSTSSQERERLVNEFNANSQVKLFLISTRAGSLGINLT-GANRVIIFDAS 1032

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            W+        +   V R  + G  +  +VY ++    +++ +  R   K  + D +++  
Sbjct: 1033 WNP-----CHDTQAVYRIYRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDEC 1087

Query: 199  KKE 201
              E
Sbjct: 1088 NPE 1090


>gi|190345390|gb|EDK37263.2| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 77/207 (37%), Gaps = 26/207 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSAS---KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y  +  E   DL      A    +      + ++  NG     + +   E+ ++      
Sbjct: 881  YDGYDEEAIEDLFSPKSRAPEKFTSTDIISRLIEETNGFTPSTKIEKCIELVNQ------ 934

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP 110
             I  K++   IIV   F +    ++            +    +LD    TI+ + +G   
Sbjct: 935  -IRTKSSEEKIIVFSQFTTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGSTQ 993

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     +   GL L    N ++    +W+       +E   + R  + G +R VFV+ +
Sbjct: 994  VLLISLRAGNVGLTLT-CANHVILMDPFWNP-----FVEEQAMDRAHRIGQQREVFVHRI 1047

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  +TI+  +++  + K  +    L+ 
Sbjct: 1048 LLNDTIEGRIMELQKYKKEMVQNALDE 1074



 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 3/42 (7%), Positives = 12/42 (28%), Gaps = 3/42 (7%)

Query: 4   YHKFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYY 42
           Y   ++ +    +G         +  +  ++  Q    +   
Sbjct: 709 YDALEQNIQSKAEGLLNSAGSTTSILTLLLRLRQACCHSYLV 750


>gi|159128918|gb|EDP54032.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           fumigatus A1163]
          Length = 1008

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              T
Sbjct: 611 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMT 670

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + E+N + K  +      S G GLN+    N +V     W+        +   
Sbjct: 671 YEERTKVVDEFNSDPKQFVFLISTRSGGVGLNITS-ANKVVVVDPNWNPSH-----DLQA 724

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 725 QDRAYRIGQSRNVEVFRLISVGTIEEIVYARQIYKQQQAN 764


>gi|70989315|ref|XP_749507.1| DNA excision repair protein (Rad26L) [Aspergillus fumigatus Af293]
 gi|66847138|gb|EAL87469.1| DNA excision repair protein (Rad26L), putative [Aspergillus
           fumigatus Af293]
          Length = 1008

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              T
Sbjct: 611 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFHYTSYNVSYLDGSMT 670

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    + E+N + K  +      S G GLN+    N +V     W+        +   
Sbjct: 671 YEERTKVVDEFNSDPKQFVFLISTRSGGVGLNITS-ANKVVVVDPNWNPSH-----DLQA 724

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 725 QDRAYRIGQSRNVEVFRLISVGTIEEIVYARQIYKQQQAN 764


>gi|196008861|ref|XP_002114296.1| hypothetical protein TRIADDRAFT_11949 [Trichoplax adhaerens]
 gi|190583315|gb|EDV23386.1| hypothetical protein TRIADDRAFT_11949 [Trichoplax adhaerens]
          Length = 616

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 17/160 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQ 102
             K     +I  K + + +++  +    L  L+                    +    ++
Sbjct: 424 KMKALEALLIKFKKDGSKVLLFSYSVQLLNILETYIMCKGINYCRLDGNTRIEQRADIVR 483

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           ++N + +I L      +   GLN   G N ++ F   W+        +     R  + G 
Sbjct: 484 KFNNDPQISLCLISTKAGSLGLNFT-GANSVLIFDPNWNPAH-----DLQAQDRAYRIGQ 537

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +  V VY LI   TI+E++  R   K  + ++ +   K+ 
Sbjct: 538 RCDVRVYRLITSGTIEEVMYLRQIYKLQLANVAMQNSKER 577


>gi|19114237|ref|NP_593325.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe 972h-]
 gi|74676241|sp|P87114|FFT1_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase fft1; AltName:
           Full=Fun thirty-related protein 1
 gi|2094863|emb|CAB08602.1| fun thirty related protein Fft1 [Schizosaccharomyces pombe]
          Length = 944

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 20/202 (9%)

Query: 7   FQRELYCDLQGENI-EAFNSAS--KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + + Y D   + I E     S  +  K          +  +        +  K   ++ 
Sbjct: 716 LREDAYLDANPQYIFEDMEVMSDFELHKLADQYRHLHPFALKGKPWMDSAKVKKLCSLLK 775

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLL 112
           +      I++   F   L  L+                  ++     I +++      + 
Sbjct: 776 KSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVF 835

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G G+NL    NI++ F   ++  +           R  + G  R V VY LI 
Sbjct: 836 LLSTKSGGFGINLT-CANIVILFDCSFNPFDDM-----QAEDRAHRVGQTRPVHVYRLIT 889

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           +NTI+E + +   TK T++  L
Sbjct: 890 KNTIEENIRRLANTKLTLESSL 911


>gi|159123101|gb|EDP48221.1| DNA excision repair protein Rad16, putative [Aspergillus fumigatus
           A1163]
          Length = 940

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  +      IV   F S L  ++                 T  +   +I  + N   +
Sbjct: 778 KLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQRSIDYFMNNVDV 837

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 838 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 891

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  LN  + E + 
Sbjct: 892 LCIEDSVESRIVLLQEKKANLINGTLNKDQGEALE 926


>gi|195089759|ref|XP_001997485.1| GH22211 [Drosophila grimshawi]
 gi|193891548|gb|EDV90414.1| GH22211 [Drosophila grimshawi]
          Length = 1076

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 53/247 (21%)

Query: 1    MKQYHKF----QRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKE---- 50
            ++ Y  F     ++    L          +          + N       +         
Sbjct: 765  LRLYEDFSNKHLKDCLDKLDDTENLGTKSHIFQALRYLQNVCNHPKLVLRQPSDDLSSSV 824

Query: 51   --------------VHDEKIKALEVIIEKA---------NAAPIIVAYHFNSDLARLQKA 87
                           H  K+ AL+ ++            +    ++     + L  ++  
Sbjct: 825  AAQLALTNSTLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEHD 884

Query: 88   FPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
              +                       +  +N +  I +L       G GLNL  G + ++
Sbjct: 885  LLRKHLPRVTYLRLDGSVPASMRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVI 943

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F    W+      M +   + R  + G K+ V VY LI +N+++E ++   + K    + 
Sbjct: 944  FVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMSLQKFKIVTANT 998

Query: 194  LLNALKK 200
            +++A   
Sbjct: 999  VVSAENA 1005


>gi|302839537|ref|XP_002951325.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
 gi|300263300|gb|EFJ47501.1| hypothetical protein VOLCADRAFT_61396 [Volvox carteri f.
           nagariensis]
          Length = 192

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F +               ++    +Q +N + KI +      S G G+NL  G + ++F+
Sbjct: 72  FLNLHGHTYMRLDGSTRPEQRQVLMQRFNTDPKIFVFILSTRSGGVGINLT-GADTVIFY 130

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAV--FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              W+       ++     R  + G  R V   +Y L+++NTI+E +L++   K  +  L
Sbjct: 131 DSDWNPA-----MDAQAQDRCHRIGQTREVCVHIYRLVSENTIEENILRKSDQKRQLDYL 185

Query: 194 LLNA 197
            + +
Sbjct: 186 AIQS 189


>gi|238504250|ref|XP_002383356.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            flavus NRRL3357]
 gi|220690827|gb|EED47176.1| chromatin remodeling complex subunit (Chd3), putative [Aspergillus
            flavus NRRL3357]
          Length = 1455

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 70/209 (33%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYD---EEKHWKEVHDEK----------IKALEVIIE 64
            +  E  N  +  ++  +       Y    EE+        K          +  L +   
Sbjct: 901  KQAERQNLNNILMQLRKCLCHPFIYSTAIEERTNNATASHKHLVEAAGKLQLLQLMLPKL 960

Query: 65   KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL-- 112
            +     +++   F  +L  ++                 +  +    I ++N    P    
Sbjct: 961  RERGHRVLIFSQFLDNLDIVEDFLDGLGLLHCRLDGRMSSLEKQKMIDQYNAQDSPYFAF 1020

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S G G+NL    + ++     ++  +         ++R  + G K  V V+ L+ 
Sbjct: 1021 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMT 1074

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1075 RGSAEEKIMQIGKKKMVLDHVLIDRMVSE 1103


>gi|194744638|ref|XP_001954800.1| GF18453 [Drosophila ananassae]
 gi|190627837|gb|EDV43361.1| GF18453 [Drosophila ananassae]
          Length = 1056

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
               K+  +  I++    K+     IV   + S L  L+                  +   
Sbjct: 883  PSSKMLKVMEILKTSILKSKDDKAIVVSQWTSVLDILRDHLEHAGLPTLSLNGTIPVKNR 942

Query: 98   PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N  +    +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 943  QDIVNQFNNRQSDKRILLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 996

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G K+ V +Y  +  +T+++ +      K  + + +L
Sbjct: 997  IYRVGQKKDVIIYKFMCADTVEQRIKALQDKKLELANGVL 1036



 Score = 41.7 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 5/51 (9%), Positives = 16/51 (31%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y   Q+        + +++       ++  Q+       D     +E ++ 
Sbjct: 760 YKMHQKFSKMAGGKKEVKSHEILVLLLRLRQICCHPGLIDAMLEGEEANNM 810


>gi|241809906|ref|XP_002414557.1| helicase, putative [Ixodes scapularis]
 gi|215508768|gb|EEC18222.1| helicase, putative [Ixodes scapularis]
          Length = 790

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 18/171 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----- 92
           G  Y  +E          I    +   KA  + ++V       L  L+      R     
Sbjct: 197 GPPYTTDEHIVYNCGKMVILDKLLPKLKAQGSRVLVFSQMTRMLDILEDYCLWRRYGYCR 256

Query: 93  -----TLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  ++   +I E+N              + G G+NL    ++++ F   W+ +   
Sbjct: 257 LDGQTPHEERTLSINEFNRPGSEKFLFMLSTRAGGLGINL-ATADVVILFDSDWNPQ--- 312

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++   + R  + G  +AV V+ LI +NT++E +++R   K  +  +++ 
Sbjct: 313 --VDLQAMDRAHRIGQTKAVRVFRLITENTVEERIVERAEVKLRLDTVVIQ 361


>gi|83318941|emb|CAJ38808.1| Lodestar protein [Platynereis dumerilii]
          Length = 1244

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 52   HDEKIKALEVIIEKA-------NAAPIIVAYHFNSDLARLQKA----------FPQGRTL 94
               KI+ +   I++        N +  ++   +   L  ++                   
Sbjct: 1033 PSTKIQNILEKIKEIKKESPPGNPSKCVIVSQWTKMLDVIEYHLKSEGVQCCSIRGDMPP 1092

Query: 95   DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             K    +  +N       ++     + G GLNL  GGN L+   L W+     Q  +RI 
Sbjct: 1093 KKRSEIVDLFNTPSSGPEVMLLSLRAGGVGLNL-IGGNHLIMVDLHWNPALEAQACDRI- 1150

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + G K+ VF++  + +NT++E +    ++K  + + +L+ 
Sbjct: 1151 ----YRVGQKKDVFIHRFVCKNTVEEKIQMLQKSKMALAENILSG 1191


>gi|66356826|ref|XP_625591.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
 gi|46226589|gb|EAK87577.1| Swi/SNf2 RAD26 [Cryptosporidium parvum Iowa II]
          Length = 1181

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++ +N    I L        G GLN+  G N ++ +  WW+        +     R
Sbjct: 779 RFSLVKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYDPWWNPMT-----DVQAKER 832

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G K+ V VY LI ++TI+E + QR   K  I   +L   K +
Sbjct: 833 CWRIGQKKEVIVYRLITRDTIEEKIFQRQLFKEFIAKQILKDPKSQ 878


>gi|328860513|gb|EGG09619.1| hypothetical protein MELLADRAFT_95838 [Melampsora larici-populina
            98AG31]
          Length = 1765

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 40/237 (16%)

Query: 2    KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVY----------YDEE 45
            K Y     +    +      +       +  +  ++  +                  ++ 
Sbjct: 1016 KVYKGLLSKNVAVITAIYSKKKNKHSKASCMNLLMQLRKALAHPYLNDPEIEPDVSDEQT 1075

Query: 46   KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------------FP 89
                     K+  L+  I K       I++   F   L  +++                 
Sbjct: 1076 HDNLVEASGKLVFLQKFIPKLLKRGHRILIFSQFTIFLDIMERFLEGEERPYLRLSTLQD 1135

Query: 90   QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               +       I  +N       L      + G G+NL    + ++     ++       
Sbjct: 1136 GTTSQLDRQTRIDAFNRPNSNHNLFLLSTRAGGAGINL-ATADTVIILDPDYNP-----H 1189

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +   ++R  + G K+ V V+ L+   + +E ++Q  + K  +  L++  + +E   
Sbjct: 1190 NDLQAISRAHRFGQKKPVNVFKLMTSASAEERIVQMGKRKLVLDHLVIQKVSEEETE 1246


>gi|302809340|ref|XP_002986363.1| hypothetical protein SELMODRAFT_123971 [Selaginella moellendorffii]
 gi|300145899|gb|EFJ12572.1| hypothetical protein SELMODRAFT_123971 [Selaginella moellendorffii]
          Length = 585

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 17/145 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW-NEG 107
           ++ +I K  +A  +V   F S L  +  +F            G +L +    I  + N+ 
Sbjct: 446 VKKMISKDTSAKGLVFSQFTSMLDLIGYSFELAGVKCVKLDGGMSLSQRSTAIDTFRNDP 505

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  L      + G  LNL    + +     WW+       +E     R  + G  + + V
Sbjct: 506 ECKLFLMSLKAGGVALNLT-VASYIFLMDPWWNPA-----VEHQAQDRIHRIGQYKPIRV 559

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQD 192
              + +N+++E +L+    K  + +
Sbjct: 560 TRFVIENSVEERILKLQEKKQLVFE 584


>gi|225557429|gb|EEH05715.1| ATP-dependent helicase RIS1 [Ajellomyces capsulatus G186AR]
          Length = 1083

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 38/188 (20%)

Query: 47  HWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
             + +   KI+ L  I++ ++     IV   F S L +++                    
Sbjct: 810 TPEHLASTKIRYLMKILKAESGDYKFIVFSFFTSMLNKIEPFLKDSHIGYVRYDGAMRND 869

Query: 96  -KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL------------- 141
            ++    +  N  K  +L     +   GLNL    + +V    +W+              
Sbjct: 870 LREISLDKLRNSPKTRVLLCSLRAGSLGLNLTA-ASRVVILEPFWNPVWHSSASSQTIFY 928

Query: 142 ------------EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                        +  Q +E   + R  +      V +Y L  +NT++E ++     K  
Sbjct: 929 SKFQSQKSELTCNQTPQFVEEQAIDRVHRLNQTVDVKIYKLTIKNTVEERIVDLQERKRE 988

Query: 190 IQDLLLNA 197
           + +  +  
Sbjct: 989 LANATIEG 996



 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   +  +NI   ++    ++  Q  N     
Sbjct: 550 YKRLEQRTDKTLERMIGDDNINYASALVLLLRLRQACNHPDLV 592


>gi|70987425|ref|XP_749126.1| DNA excision repair protein Rad16 [Aspergillus fumigatus Af293]
 gi|66846756|gb|EAL87088.1| DNA excision repair protein Rad16, putative [Aspergillus fumigatus
           Af293]
          Length = 940

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  +      IV   F S L  ++                 T  +   +I  + N   +
Sbjct: 778 KLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQRSIDYFMNNVDV 837

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 838 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 891

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  LN  + E + 
Sbjct: 892 LCIEDSVESRIVLLQEKKANLINGTLNKDQGEALE 926


>gi|303390601|ref|XP_003073531.1| DNA repair and recombination protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302678|gb|ADM12171.1| DNA repair and recombination protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 688

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 47/218 (21%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------------------------- 52
           I   N  S      ++ N    +   K                                 
Sbjct: 396 IGKANLLSGISMLRKVCNHPRLFIPRKEDGSEDLSEEASGEKNNEETLGLLKKEESQYGL 455

Query: 53  ---DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------PC 99
                KIK L  ++   K+    ++V       L  ++K   +   L  D          
Sbjct: 456 VSSSCKIKILMDLLKKWKSEGNKVLVFSQTIRMLDIIEKCVEKYAYLRMDGRTSTSSRSS 515

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N +  I +        G GLNL  G + +V +   W+        +     R  +
Sbjct: 516 LVDRFNKDDSIFMFLLTTKVGGLGLNLT-GASRIVIYDPDWNPST-----DTQAKERAWR 569

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ V +Y  I ++TI+E V Q+   K  +   +L+
Sbjct: 570 YGQRKGVEIYRFICKDTIEEKVYQKQIFKDLLGKKVLS 607


>gi|194899384|ref|XP_001979240.1| GG14296 [Drosophila erecta]
 gi|190650943|gb|EDV48198.1| GG14296 [Drosophila erecta]
          Length = 1077

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKD 97
               KI  +  I++    K++    IV   + S L  L++                 +   
Sbjct: 881  PSSKINMVMQILKTSILKSSDDKAIVVSQWTSVLDILREHLSKDGVPTLSLNGSIPVKNR 940

Query: 98   PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N    +  +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 941  QDIVNQFNERNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 994

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              + G K+ V +Y  +  +T+++ +      K  + D +L   K+
Sbjct: 995  IYRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAKR 1039



 Score = 40.9 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++          +++ +     ++  Q+         +   E+    E H      
Sbjct: 760 YKMHEKFAKMAGSKREVKSHDILVLLLRLRQICCHPGLIDAMLDGEDTQSMEDHSSDSDT 819

Query: 59  LE-VIIEKANA 68
            E  ++ + N 
Sbjct: 820 PEIDLLAQLNK 830


>gi|134111577|ref|XP_775325.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257984|gb|EAL20678.1| hypothetical protein CNBE0430 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1045

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK 108
            E +  K      +V   F S L  +     +                +D           
Sbjct: 883  EKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQRDATIQHFMKNTG 942

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G  LNL    +++     WW+     Q ++RI      + G KR V V 
Sbjct: 943  VTVFLISLKAGGVALNLTE-ASMVFMMDSWWNPSVEYQAMDRI-----HRLGQKRPVKVV 996

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ +++I++ ++Q    K  + +  L++
Sbjct: 997  KLVIEDSIEDQIVQLQAKKLAMTEAALSS 1025


>gi|242220532|ref|XP_002476031.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724754|gb|EED78776.1| predicted protein [Postia placenta Mad-698-R]
          Length = 808

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 30/200 (15%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +R        E++E    A   +K LQ                +   K+K L  ++E+ +
Sbjct: 595 RRGALYRFVKEDMEVMTDAELQLKYLQ-----------PDDCYLQAGKVKVLLQLLERYH 643

Query: 68  --AAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGK-IPLLFA 114
                +++   F   L  LQK   +                    + E+ + + I +   
Sbjct: 644 AEGRRVLIFSQFTQILDILQKVLEKEGIRFSLLTGATPVDARQSLVDEFTDDESISVFLL 703

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    ++++ F   ++        ++    R  + G K+ V V  LI + 
Sbjct: 704 STKAGGMGINLTA-ASVVIMFDQDFNP-----HNDKQAQDRAYRIGQKQNVDVVKLITKG 757

Query: 175 TIDELVLQRLRTKSTIQDLL 194
           +I+E +L   +TK  + + +
Sbjct: 758 SIEEDMLALGQTKLALDEAV 777


>gi|145341798|ref|XP_001415990.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576213|gb|ABO94282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 663

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 33/227 (14%)

Query: 2   KQYHKFQRELYCDLQ---GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------- 51
           K Y       +  L+          N A+  ++  +        D  +            
Sbjct: 440 KCYRALFERNFSFLRQGCDSRESFANFANIMMEVRKCCQHPFLLDGVEAAIAPEGASTTA 499

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--------- 96
                 K++ L+ ++          ++       L         +G +  +         
Sbjct: 500 LVSSAGKLQLLDKLLPHLREGGHRALIFSQMTRVLDVLEDYCRARGHSYVRLDGSITGKA 559

Query: 97  DPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I ++   +    L      + G G+NL    + +V F   W+ +      +   + 
Sbjct: 560 RQEAIDKYCAEDSDTFLFLLSTRAGGQGINL-VQADTVVMFDSDWNPQN-----DAQALA 613

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R V VY L+ + T ++ +  R   K  ++  +  + +KE
Sbjct: 614 RAHRIGQTRQVQVYRLVMRATYEKEMFTRASMKLGLEQAIFGSAEKE 660


>gi|74007793|ref|XP_549075.2| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency complementation group 6 - like [Canis
           familiaris]
          Length = 1268

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 61/245 (24%), Gaps = 55/245 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 401 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARARHLLSLGSVKFSVQG 458

Query: 42  -------------YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
                                     K+  L  ++ +        +V       L  +++
Sbjct: 459 ENEGEDASDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDEGHQTLVFSQSRQILNIIER 518

Query: 87  AFPQGR-----------TLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             L +    I          +        G GL L      +V 
Sbjct: 519 LLKNRHFKILRVDGTVTHLVEREKRIHLFQQNKDYSVFLLTTQVGGVGLTLTA-ATRVVI 577

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+        +   V R  + G K  + VY LI   T++E + +R   K ++    
Sbjct: 578 FDPSWNPAT-----DAQAVDRVYRIGQKENIVVYRLITCGTVEEKIYRRQVFKDSLIRQT 632

Query: 195 LNALK 199
               K
Sbjct: 633 TGDKK 637


>gi|326489199|dbj|BAK01583.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326497361|dbj|BAK02265.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 838

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  +IE   +A  IV   F S L  ++ +  +              ++K     
Sbjct: 670 DALREEIRNMIEHDGSAKGIVFSQFTSFLDLIEFSLQRSGIKCVQLNGKMNMVEKGRAID 729

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    +      + G  LNL    + +     WW+       +E     R  + G 
Sbjct: 730 TFINDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VESQAQDRIHRIGQ 783

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +     + ++T++E +LQ    K  + D  +  
Sbjct: 784 FKPIRSTRFVIKDTVEERILQLQEKKQLVFDGTVGD 819


>gi|47156981|gb|AAT12357.1| helicase MOT1-like protein [Antonospora locustae]
          Length = 509

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 78/190 (41%), Gaps = 7/190 (3%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           G   ++ +S ++  + L+L +       E     +   ++K   ++  +  +   ++  H
Sbjct: 298 GNVNKSTSSFTRIQRLLKLCSTFKLGALEDLLVLMGGNEMKTKALVFCQLKSTIDMITKH 357

Query: 77  FNSDLARLQKAFPQGRTLDK-DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            N   A L+     G    K     + ++N     +LF      G GLNL  G + ++ +
Sbjct: 358 VNGVFASLKHLRLDGNVPPKNRQKLVADFNTQDYNILFLTTQIGGLGLNLT-GADTVILY 416

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+        +   + R  + G K+ V V+ +I ++TI+E V+     K  + + L+
Sbjct: 417 EHDWNP-----FNDLQAMDRVHRLGQKKTVNVFRIILKDTIEEKVMSYQNFKMYVANALV 471

Query: 196 NALKKETIHV 205
           N   K+   +
Sbjct: 472 NYENKDVSQM 481


>gi|261333966|emb|CBH16960.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 984

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 50  EVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
            +   K+ A+   I        +IV   F   L  +Q    +             L +  
Sbjct: 812 PLRGTKLDAITEYICSIPEEEKVIVFSQFGDTLDLIQLWLQKVKVKTVKLVGSLMLSQRQ 871

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ + ++  +  +     + G GLNLQ   N +V    WW+              R  
Sbjct: 872 AVLRAFLHDKSVRAILISLKAGGEGLNLQ-IANHVVLVDPWWNPAVEM-----QAAQRAH 925

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V V   + + +++E +L+    K  + +  ++ 
Sbjct: 926 RIGQTRPVRVVRFVTERSVEERMLELQEKKMLVIEGTIDG 965


>gi|67526707|ref|XP_661415.1| hypothetical protein AN3811.2 [Aspergillus nidulans FGSC A4]
 gi|40740829|gb|EAA60019.1| hypothetical protein AN3811.2 [Aspergillus nidulans FGSC A4]
 gi|259481632|tpe|CBF75332.1| TPA: DNA excision repair protein (Rad26L), putative
           (AFU_orthologue; AFUA_2G03750) [Aspergillus nidulans
           FGSC A4]
          Length = 1016

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
             K+    +     N   ++V  H    L  LQ  F              T +     + 
Sbjct: 625 KWKVLRKLLKWWHGNGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGSMTYETRAKVVD 684

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+N + +  +      + G GLN+    N +V     W+        +     R  + G 
Sbjct: 685 EFNSDPRQFVFLISTRAGGVGLNITS-ANKVVIVDPNWNPSH-----DLQAQDRAYRIGQ 738

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R V V+ LI+  TI+E+V  R   K    +
Sbjct: 739 TRNVEVFRLISAGTIEEIVYARQIYKQQQAN 769


>gi|119482550|ref|XP_001261303.1| DNA excision repair protein Rad16, putative [Neosartorya fischeri
           NRRL 181]
 gi|119409458|gb|EAW19406.1| DNA excision repair protein Rad16, putative [Neosartorya fischeri
           NRRL 181]
          Length = 977

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  +      IV   F S L  ++                 T  +   +I  + N   +
Sbjct: 815 KLRSQKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQKSIDYFMNNVDV 874

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 875 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 928

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  LN  + E + 
Sbjct: 929 LCIEDSVESRIVLLQEKKANLINGTLNKDQGEALE 963


>gi|150866161|ref|XP_001385659.2| snf family helicase [Scheffersomyces stipitis CBS 6054]
 gi|149387417|gb|ABN67630.2| snf family helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1557

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
            ++    + A      LQ   G +     K  K + +        +I       + +   F
Sbjct: 1263 KSQTKLSIAFPDKSLLQYDCGKLQ----KLAKLLQNLTAGGHRALIFTQMTKVLDILEQF 1318

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             +              ++      +++N + KI +      S G G+NL  G + ++F+ 
Sbjct: 1319 LNIHGYRYSRLDGATKIEDRQLLTEKFNRDPKISVFILSTRSGGLGINLT-GADTVIFYD 1377

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+       +++    R  + G  R V +Y  +++ TI+  +L++   K  + ++++ 
Sbjct: 1378 SDWNPA-----MDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILKKANQKRQLDNVVIQ 1432

Query: 197  ALK 199
              +
Sbjct: 1433 EGE 1435


>gi|58267202|ref|XP_570757.1| DNA repair protein rad16 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57226991|gb|AAW43450.1| DNA repair protein rad16, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1045

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 17/149 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGK 108
            E +  K      +V   F S L  +     +                +D           
Sbjct: 883  EKLRHKDCTIKSLVFSQFVSFLDLIAFRLQRAGFNICRLEGSMTPQQRDATIQHFMKNTG 942

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            + +      + G  LNL    +++     WW+     Q ++RI      + G KR V V 
Sbjct: 943  VTVFLISLKAGGVALNLTE-ASMVFMMDSWWNPSVEYQAMDRI-----HRLGQKRPVKVV 996

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+ +++I++ ++Q    K  + +  L++
Sbjct: 997  KLVIEDSIEDQIVQLQAKKLAMTEAALSS 1025


>gi|168705803|ref|ZP_02738080.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQ 102
             K+  L   +E+   +    I+   +   L  L K         +       +    + 
Sbjct: 5   SAKLVQLLSDMEEVAESGRKAIIFSQWVEPLEVLAKALAKYGPLQYHGKIPQPQRTPILD 64

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +  +    +L     +   GLNLQ+  N +  F  WW+       IE   + R  + G 
Sbjct: 65  RFKSDPSAHVLLMSYGTGSVGLNLQFT-NYVFLFDRWWNPA-----IEDQAINRAHRLGQ 118

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           K  V V   ++  TI+  +   L  K  + + L+
Sbjct: 119 KHPVTVTRFLSGGTIEGRIADILDAKRKVFNDLI 152


>gi|58261298|ref|XP_568059.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57230141|gb|AAW46542.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 900

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 25/181 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQG------- 91
             Y      + ++  KI  L   +         +V   F S L  +     Q        
Sbjct: 706 SLYLPSSQARSINSAKIDELVKYLRIFPRDDKTLVFSQFTSFLDCVGVRLEQEGVKFVRF 765

Query: 92  ---RTLDKDPCTIQEWNEGK--------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  +    I+ + E            ++     S   GLNL    + +     WW 
Sbjct: 766 DGRMPGKQRTEVIKAFQEPVKGDDDEEAPTVMLISLKSGAVGLNLTA-ASNVFLCDPWW- 823

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               Q  IE   + R  + G K+ V V+ LIA++TI+  VL   + K  +         K
Sbjct: 824 ----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVLDIQKRKDAMVAKAFEKSSK 879

Query: 201 E 201
           E
Sbjct: 880 E 880


>gi|134115669|ref|XP_773548.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256174|gb|EAL18901.1| hypothetical protein CNBI1620 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 899

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 25/181 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQG------- 91
             Y      + ++  KI  L   +         +V   F S L  +     Q        
Sbjct: 705 SLYLPSSQARSINSAKIDELVKYLRIFPRDDKTLVFSQFTSFLDCVGVRLEQEGVKFVRF 764

Query: 92  ---RTLDKDPCTIQEWNEGK--------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  +    I+ + E            ++     S   GLNL    + +     WW 
Sbjct: 765 DGRMPGKQRTEVIKAFQEPVKGDDDEEAPTVMLISLKSGAVGLNLTA-ASNVFLCDPWW- 822

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               Q  IE   + R  + G K+ V V+ LIA++TI+  VL   + K  +         K
Sbjct: 823 ----QSAIEAQAIDRAHRMGQKKVVRVFQLIAEDTIESRVLDIQKRKDAMVAKAFEKSSK 878

Query: 201 E 201
           E
Sbjct: 879 E 879


>gi|299754942|ref|XP_001828302.2| hypothetical protein CC1G_02883 [Coprinopsis cinerea okayama7#130]
 gi|298410996|gb|EAU93653.2| hypothetical protein CC1G_02883 [Coprinopsis cinerea okayama7#130]
          Length = 928

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             ++ +   A  I    F            +  T ++        N+ +  ++     + 
Sbjct: 793 LELLGECLDARRIKFIEF----------NGKKSTHERTGALDVIANDPRCHVMLISLKAG 842

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             GL++    N ++    WW+       +E   ++R  + G  R V VY +I  +TI+  
Sbjct: 843 SVGLDITS-CNNVILMDPWWNP-----FVEEQAISRVHRFGQTRPVTVYRIITPDTIEPR 896

Query: 180 VLQRLRTKSTIQDLLLN 196
           + +  + K T  +  L+
Sbjct: 897 IQEIQQEKRTQVEAYLD 913


>gi|281200733|gb|EFA74951.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1336

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 80/236 (33%), Gaps = 44/236 (18%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------KHWKEV--- 51
            ++ Y  F      +++    +  +  +      ++++  +   EE         K++   
Sbjct: 811  IEIYKTFLNS--EEVKDALNKTSSPLAALTVLKKISDHPLLLHEEMSSCASPEMKQIMHK 868

Query: 52   ------------HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ------- 90
                        +  K++ L  ++   K     +++       L  +++           
Sbjct: 869  FGDNSTIKSLVRNSGKMQFLYYLLPNLKQEGHRLLIFSQSVKMLNAIEQLLNYLKLSFLR 928

Query: 91   ----GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +  +    I E+N + +I            GLN+    + +V F   W+     
Sbjct: 929  IDGSISSSKERQKRIDEFNGDREIFCFLLTIQVGALGLNMTS-ADRVVIFDPSWN----- 982

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              ++   V R  + G  + V VY L+   TI+E + ++   K  +   +LN  K +
Sbjct: 983  -TVDNQAVDRVYRIGQTKDVVVYRLMCCGTIEEKIYRKQVFKGALMKTMLNQGKGQ 1037


>gi|255714703|ref|XP_002553633.1| KLTH0E03476p [Lachancea thermotolerans]
 gi|238935015|emb|CAR23196.1| KLTH0E03476p [Lachancea thermotolerans]
          Length = 1474

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 11/166 (6%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
             LQ   G +     K    + D K      +I       + V   F +    L       
Sbjct: 1197 LLQYDCGKLQ----KLATLLRDLKDGGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGA 1252

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++      + +N + +I        S G G+NL  G + ++F+   W+       +++
Sbjct: 1253 TKIEDRQILTERFNTDNRITAFILSSRSGGLGINLT-GADTVIFYDSDWNPA-----MDK 1306

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                R  + G  R V +Y  ++++TI+  +L++   K  + ++++ 
Sbjct: 1307 QCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQ 1352


>gi|91089209|ref|XP_967093.1| PREDICTED: similar to helicase [Tribolium castaneum]
 gi|270012470|gb|EFA08918.1| hypothetical protein TcasGA2_TC006624 [Tribolium castaneum]
          Length = 871

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 33/208 (15%)

Query: 4   YHKFQREL----YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y     E        +    I   N  +K  +CL+                +   K   L
Sbjct: 641 YKDTVEEYIVQDLLFMSDFEI---NKLTKIHRCLE-------RYMLPDNLILTSGKFLYL 690

Query: 60  EVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-E 106
           + I+ +   N   +++   +   L  ++                  +++    + E+  +
Sbjct: 691 DKILAELKQNGHRVLIFSQYVIMLNVMEDYLKIRKHKYLRMDGSTPVNERQDLVDEYMGD 750

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +      + G G+NL    + ++   + ++        ++    R  + G  R V 
Sbjct: 751 NSIFIFLLSTRAGGLGINLTS-ADTVIIHDIDFNP-----YNDKQAEDRCHRMGQTRPVT 804

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           VY L++Q TI+E +L+  + K  ++  +
Sbjct: 805 VYRLVSQGTIEEGMLEMNKEKLKLERQI 832


>gi|110289185|gb|ABB47753.2| SNF2 domain-containing protein, putative, expressed [Oryza sativa
            Japonica Group]
          Length = 1476

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 91   GRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    ++ +N+    ++        +   G+NL    N ++     W+       
Sbjct: 1177 STPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINLHS-ANRVILLDGSWNPTH---- 1231

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KK 200
             +   + R  + G  + V+ Y L+A  T++E + +R  TK  +   +++         K+
Sbjct: 1232 -DLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKE 1290

Query: 201  ETIHV 205
            E +H+
Sbjct: 1291 EMLHL 1295


>gi|66827541|ref|XP_647125.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60475296|gb|EAL73231.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1159

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-------- 90
            Y+  ++ + E   + +K  E++ ++   N + +++       L  L+             
Sbjct: 972  YWIPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDIFGYNFTRL 1031

Query: 91   --GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +++    I  ++  + IP+      S G G+NL    N+++F+ L ++ +     
Sbjct: 1032 DGSTPVNERQSIIDHFSSKETIPVFLLSTNSGGLGINLT-CANVVIFYDLSFNPQ----- 1085

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++R    R  + G +R V +Y L+A+NT+D  + +    K  + D +L  
Sbjct: 1086 VDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESANQKKKLNDNVLEE 1135


>gi|332020038|gb|EGI60489.1| Helicase ARIP4 [Acromyrmex echinatior]
          Length = 3091

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 85   QKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI L      +   G+NL  G N  + F   W+   
Sbjct: 2077 YYRLDGSTSALEREKLINEFNNNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNP-- 2133

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   V R  + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2134 ---CHDTQAVCRVYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2183


>gi|307213762|gb|EFN89100.1| Helicase ARIP4 [Harpegnathos saltator]
          Length = 3154

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI L      +   G+NL  G N  + F   W+   
Sbjct: 2109 YYRLDGSTSALEREKLINEFNSNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNP-- 2165

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   V R  + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2166 ---CHDTQAVCRVYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2215


>gi|307179332|gb|EFN67696.1| Helicase ARIP4 [Camponotus floridanus]
          Length = 3060

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 85   QKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI L      +   G+NL  G N  + F   W+   
Sbjct: 2065 YYRLDGSTSALEREKLINEFNNNPKIHLFLVSTRAGSLGINL-VGANRAIVFDASWNP-- 2121

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   V R  + G ++  FVY L+  N ++  +  R  +K  + D +++
Sbjct: 2122 ---CHDTQAVCRVYRYGQQKPCFVYRLVTDNCLERKIYDRQISKQGMADRVVD 2171


>gi|268572621|ref|XP_002641368.1| Hypothetical protein CBG13225 [Caenorhabditis briggsae]
          Length = 1077

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K++    I+E        +++   + S L  +++    G                   
Sbjct: 903  SCKMQKTLEIVEDILEKKEKVVIVSQWTSVLNLVEQHIQNGGHNYTSITGQVQVKDRQER 962

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  G ++++   L W+    QQ  +RI      +
Sbjct: 963  VDSFNQEKGGARVMLLSLTAGGVGLNLVGGNHLVMI-DLHWNPALEQQACDRI-----YR 1016

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ V+++ LI +NTI++ V++    K T+   +L+      ++
Sbjct: 1017 MGQKKPVYIHRLIVKNTIEQRVVELQEKKMTLAASVLDGTATRKMN 1062


>gi|25465825|pir||T51892 hypothetical protein B23I11.40 [imported] - Neurospora crassa
          Length = 1173

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPC 99
              KI  L  I+  +A     IV   F S L  ++          K               
Sbjct: 938  SSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMSNDAREA 997

Query: 100  TIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++     + +  +L         GLNL      ++    +W+       +E   + R  +
Sbjct: 998  SLHSLRKDPRTRILLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAIDRVHR 1051

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  V VY L  + T++  +L+    K  +    +  
Sbjct: 1052 LTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQTAVEG 1090



 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVY 41
           Y   +      L+    G  +   N+    ++  Q  N    
Sbjct: 582 YKALEERADQSLEKMMKGRTVNYANALVLLLRLRQACNHPRL 623


>gi|85097277|ref|XP_960412.1| hypothetical protein NCU11284 [Neurospora crassa OR74A]
 gi|28921903|gb|EAA31176.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|39979195|emb|CAE85566.1| conserved hypothetical protein [Neurospora crassa]
          Length = 1197

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPC 99
              KI  L  I+  +A     IV   F S L  ++          K               
Sbjct: 962  SSKIHELIAILRREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMSNDAREA 1021

Query: 100  TIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++     + +  +L         GLNL      ++    +W+       +E   + R  +
Sbjct: 1022 SLHSLRKDPRTRILLCSLKCGSLGLNLTA-ATRVIIVEPFWNP-----FVEEQAIDRVHR 1075

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  V VY L  + T++  +L+    K  +    +  
Sbjct: 1076 LTQTVDVVVYKLTVRGTVEARILELQEKKRLLAQTAVEG 1114



 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 4/42 (9%)

Query: 4   YHKFQRELYCDLQ----GENIEAFNSASKTVKCLQLANGAVY 41
           Y   +      L+    G  +   N+    ++  Q  N    
Sbjct: 606 YKALEERADQSLEKMMKGRTVNYANALVLLLRLRQACNHPRL 647


>gi|328705649|ref|XP_001947067.2| PREDICTED: hypothetical protein LOC100164965 [Acyrthosiphon pisum]
          Length = 2250

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 7/145 (4%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
                +IE+      I     +              +  +    I ++N    + L     
Sbjct: 1724 FTLDLIEEFLQRNKIPGKDEHWCRNCDYYRLDGSTSASEREKLINDFNICNTVHLFLVST 1783

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   G+NL  G N ++ F   W+        +   V R  + G ++  FVY L+  N +
Sbjct: 1784 RAGSLGINL-VGANRVIVFDASWNP-----CHDTQAVCRVYRYGQQKPCFVYRLVTDNCL 1837

Query: 177  DELVLQRLRTKSTIQDLLLNALKKE 201
            ++ +  R   K  + D +++    +
Sbjct: 1838 EKKIYDRQINKQVMADRVVDECNPD 1862


>gi|242077288|ref|XP_002448580.1| hypothetical protein SORBIDRAFT_06g029476 [Sorghum bicolor]
 gi|241939763|gb|EES12908.1| hypothetical protein SORBIDRAFT_06g029476 [Sorghum bicolor]
          Length = 864

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
             IV   +   L  LQ +  +     +                +   + K+ ++     +
Sbjct: 713 KAIVFSQWTGMLDLLQLSLNRNDIQFRRLDGSMCLNLRERQVNEFKTDPKVRVMLMSLKA 772

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++    WW+        E   V R  + G  R V V     ++T+++
Sbjct: 773 GNLGLNMVDACH-VIMLDPWWNP-----YAEDQAVDRAHRIGQTRPVTVSRFTVKDTVED 826

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  + +     
Sbjct: 827 RILALQEKKRKMVESAFGE 845


>gi|241952408|ref|XP_002418926.1| dna repair and recombination protein rdh54, putative [Candida
           dubliniensis CD36]
 gi|223642265|emb|CAX44234.1| dna repair and recombination protein rdh54, putative [Candida
           dubliniensis CD36]
          Length = 882

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 28/198 (14%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIEKAN 67
              +S +      ++ N      +++ +K++ ++K                   I+    
Sbjct: 551 SGSDSFTMINLFKKICNSPSLLADDEFFKKIVEQKFNLGMSSGKLNILVPLLLEIVSLKE 610

Query: 68  AAPIIVAYHFNSDL--------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
              +I  Y    DL                     +     + ++N    I +      S
Sbjct: 611 KIVLISNYTKTLDLLETVLRKINLTFSRLDGSTPNNVRSKLVNQFNTNPDINVFLLSSKS 670

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL  G + L+ F   W+     Q + RI      + G  +  F+Y L     IDE
Sbjct: 671 GGMGINL-VGASRLILFDNDWNPATDLQSMSRI-----HRDGQVKPCFIYRLFTTGCIDE 724

Query: 179 LVLQRLRTKSTIQDLLLN 196
            + QR   K+ +    L+
Sbjct: 725 KIFQRQLVKNKLSSKFLD 742


>gi|15242960|ref|NP_197667.1| RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/
            hydrolase, acting on acid anhydrides, in
            phosphorus-containing anhydrides / nucleic acid binding /
            protein binding / zinc ion binding [Arabidopsis thaliana]
 gi|60390961|sp|Q9FNI6|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 2; Short=SMARCA3-like protein 2
 gi|10178249|dbj|BAB11681.1| DNA repair protein RAD5 protein [Arabidopsis thaliana]
 gi|110737306|dbj|BAF00599.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005687|gb|AED93070.1| DNA/RNA helicase protein RAD5 [Arabidopsis thaliana]
          Length = 1029

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDP 98
            V   KI AL   +E  +++ +  I+   + + L  LQ    +            +  +  
Sbjct: 860  VESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQRE 919

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++E+  +G I +L     + G G+NL    +       WW+       +E   V R  
Sbjct: 920  KVLKEFSEDGSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPA-----VEEQAVMRIH 973

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  + V +   I + T++E +      K  +    L
Sbjct: 974  RIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL 1011



 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 4/56 (7%), Positives = 9/56 (16%), Gaps = 6/56 (10%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
           Y    +                    +     ++  Q  +            E  D
Sbjct: 695 YDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSD 750


>gi|320032522|gb|EFW14475.1| DNA repair protein RAD16 [Coccidioides posadasii str. Silveira]
          Length = 945

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++    +            T  +   +I  + N  ++
Sbjct: 783 KLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQRQKSIDYFMNNVEV 842

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 843 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITK 896

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 897 LCIEDSVESRMVLLQEKKANMINGTINKDQSEALE 931


>gi|302698345|ref|XP_003038851.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
 gi|300112548|gb|EFJ03949.1| hypothetical protein SCHCODRAFT_104375 [Schizophyllum commune H4-8]
          Length = 1135

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 22/165 (13%)

Query: 53   DEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDP 98
              K+KAL      + ++      +V   F S +  ++            F     + K  
Sbjct: 959  STKLKALMDNLLRLKKEDPGFRAVVFSQFTSFMDLIEITLKREGFDQYRFDGSMDVKKRN 1018

Query: 99   CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I E+        ++     + G GLNL    N +     WW+     Q I+R+     
Sbjct: 1019 HAISEFKAPSDAPKIMVVSLKAGGVGLNLTN-ANYVFMMDCWWNAATENQAIDRV----- 1072

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G ++ VFV + I  +TI+  +LQ  + K+ I         ++
Sbjct: 1073 HRLGQEKPVFVKHFIISDTIEGRILQIQKRKTAIVKEAFRGTARD 1117


>gi|294955606|ref|XP_002788589.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239904130|gb|EER20385.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1363

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
            D  +  +  + E+  +A  +V   F+  L  +                G  + +    + 
Sbjct: 1194 DALLDEVRKMKERDPSAKGLVFSQFSRMLELVDFKLRREGISCLVLHGGIPMAQRSNILL 1253

Query: 103  EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  + +  LL     + G GLNLQ   + +     WW+    Q       + R  + G 
Sbjct: 1254 SFRQDPEFTLLLISLKAGGEGLNLQA-ASCVFLLDPWWNPAYEQ-----QAIQRAHRLGQ 1307

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +AV     I ++T++E +L     K  + D  +   ++  + 
Sbjct: 1308 TKAVNAVRFITKDTVEERILALQEKKQLVFDGTVGGNEQGALQ 1350


>gi|332190563|gb|AEE28684.1| SNF2 , helicase and zinc-finger domain-containing protein
            [Arabidopsis thaliana]
          Length = 1269

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              +Q++N    + ++    
Sbjct: 1114 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1173

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V     ++T+
Sbjct: 1174 KAASLGLNMVAACH-VIMLDLWWNPTT-----EDQAIDRAHRIGQTRPVKVVRFTVKDTV 1227

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            ++ +L   + K  +       
Sbjct: 1228 EDRILALQQKKRKMVASAFGE 1248


>gi|225897906|dbj|BAH30285.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1270

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              +Q++N    + ++    
Sbjct: 1115 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1174

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V     ++T+
Sbjct: 1175 KAASLGLNMVAACH-VIMLDLWWNPTT-----EDQAIDRAHRIGQTRPVKVVRFTVKDTV 1228

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            ++ +L   + K  +       
Sbjct: 1229 EDRILALQQKKRKMVASAFGE 1249


>gi|1931638|gb|AAB65473.1| transcription factor RUSH-1alpha isolog; 18684-24052 [Arabidopsis
            thaliana]
          Length = 1227

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              +Q++N    + ++    
Sbjct: 1072 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1131

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V     ++T+
Sbjct: 1132 KAASLGLNMVAACH-VIMLDLWWNPTT-----EDQAIDRAHRIGQTRPVKVVRFTVKDTV 1185

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            ++ +L   + K  +       
Sbjct: 1186 EDRILALQQKKRKMVASAFGE 1206


>gi|42561912|ref|NP_172577.2| SNF2 domain-containing protein / helicase domain-containing protein /
            zinc finger protein-related [Arabidopsis thaliana]
 gi|332190562|gb|AEE28683.1| SNF2 , helicase and zinc-finger domain-containing protein
            [Arabidopsis thaliana]
          Length = 1226

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHP 116
                IV   +   L  L+          +              +Q++N    + ++    
Sbjct: 1071 GEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSL 1130

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   GLN+    + ++   LWW+        E   + R  + G  R V V     ++T+
Sbjct: 1131 KAASLGLNMVAACH-VIMLDLWWNPTT-----EDQAIDRAHRIGQTRPVKVVRFTVKDTV 1184

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            ++ +L   + K  +       
Sbjct: 1185 EDRILALQQKKRKMVASAFGE 1205


>gi|19115879|ref|NP_594967.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe 972h-]
 gi|15214050|sp|O14139|HRP3_SCHPO RecName: Full=Chromodomain helicase hrp3; AltName:
           Full=ATP-dependent helicase hrp3
 gi|2408073|emb|CAB16277.1| ATP-dependent DNA helicase Hrp3 [Schizosaccharomyces pombe]
          Length = 1388

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 73/202 (36%), Gaps = 37/202 (18%)

Query: 26  ASKTVKCLQLANGAVYYD-----------------EEKHWKEVHDEKIKALEVIIEK--A 66
            +  V+  + +N    +D                 E      ++  K+  L+ ++ +   
Sbjct: 645 LNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLLSRLRR 704

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFA 114
           +   +++       L  L           +             +I  +N    P  +   
Sbjct: 705 DGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLL 764

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    + ++ F   W+ +      +   + R  + G K  V VY L++++
Sbjct: 765 STRAGGLGINLMT-ADTVIIFDSDWNPQA-----DLQAMARAHRIGQKNHVMVYRLLSKD 818

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+E VL+R R K  ++  +++
Sbjct: 819 TIEEDVLERARRKMILEYAIIS 840


>gi|224178882|ref|XP_002187939.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 181

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++    I+ + +  I +      + G G+NL    + ++F    ++ +      +   + 
Sbjct: 13  EERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTA-ADTVIFTDSDFNPQN-----DLQAIA 66

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G  + V +  LI ++T++E++ +R  +K  + + ++  
Sbjct: 67  RAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVEG 109


>gi|45185972|ref|NP_983688.1| ACR286Cp [Ashbya gossypii ATCC 10895]
 gi|44981762|gb|AAS51512.1| ACR286Cp [Ashbya gossypii ATCC 10895]
          Length = 1019

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 21/190 (11%)

Query: 30   VKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ 85
            ++  +L      +   +      +   K+  L+ ++  A       +V   F   L  L+
Sbjct: 821  LELHRLCCRFPSLASFQLSEPTWMASGKVHRLQPLLRAAIARREKTLVFSLFTQVLDILE 880

Query: 86   K----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                              ++     I  ++ +  +P+      + G G+NL    N ++ 
Sbjct: 881  LVLSSLGIAFLRLDGSTPVNDRQALIDRFHTDTDVPVFLLSTKAGGFGINL-VCANHVII 939

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F   ++  +     +R    R  + G  R V V  L+++ T++E +LQ  R K  +   +
Sbjct: 940  FDQSFNPHD-----DRQAADRAHRVGQTREVAVTTLVSRATVEEKILQLARHKLALDSSV 994

Query: 195  LNALKKETIH 204
             +    +  H
Sbjct: 995  SDRRADDLDH 1004


>gi|50552109|ref|XP_503529.1| YALI0E04136p [Yarrowia lipolytica]
 gi|49649398|emb|CAG79108.1| YALI0E04136p [Yarrowia lipolytica]
          Length = 959

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 18/159 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTI 101
             K+  L  +++       IV   F             +  R  K         +D    
Sbjct: 788 SAKVVKLLELLKADP-RKTIVFSQFTKFFDVLEPFLIRENIRYVKYDGSMPIRKRDAALA 846

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +    +L         GLNL    N +V    WW+    +Q I+R+      + G 
Sbjct: 847 TLRADPDTTVLLCSLKCGALGLNLT-CANRVVLLDPWWNPMVSEQAIDRV-----HRIGQ 900

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V VY     +++++ ++Q    K  +   ++N  ++
Sbjct: 901 TVDVDVYEFSVVDSVEKKIMQLQDKKRKLAGSVINGDRE 939


>gi|330842982|ref|XP_003293445.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
 gi|325076230|gb|EGC30034.1| hypothetical protein DICPUDRAFT_158303 [Dictyostelium purpureum]
          Length = 1044

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 17/174 (9%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------- 86
            LA+     DE+ +       K+K +       N + +++       L  L+         
Sbjct: 853  LADKYWIDDEQFYETSAKCIKLKEILQKEIHENKSKVLIFSQMTKVLDILEDVLSIFGES 912

Query: 87   --AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                     +++    I  + N   IP+      + G G+NL    N+++F+ L ++ + 
Sbjct: 913  FTRLDGQTPVNERQDIIDHFTNSKDIPVFLLSTNAGGLGINLT-CANVVIFYDLSFNPQ- 970

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                ++R    R  + G +R V VY L+ +NT+D  +      K  + D +L  
Sbjct: 971  ----VDRQAEDRAHRLGQEREVIVYKLLTENTVDIDIFNSANEKKKLNDNILEE 1020


>gi|309359914|emb|CAP32046.2| hypothetical protein CBG_13225 [Caenorhabditis briggsae AF16]
          Length = 1082

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 20/166 (12%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K++    I+E        +++   + S L  +++    G                   
Sbjct: 908  SCKMQKTLEIVEDILEKKEKVVIVSQWTSVLNLVEQHIQNGGHNYTSITGQVQVKDRQER 967

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  G ++++   L W+    QQ  +RI      +
Sbjct: 968  VDSFNQEKGGARVMLLSLTAGGVGLNLVGGNHLVMI-DLHWNPALEQQACDRI-----YR 1021

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ V+++ LI +NTI++ V++    K T+   +L+      ++
Sbjct: 1022 MGQKKPVYIHRLIVKNTIEQRVVELQEKKMTLAASVLDGTATRKMN 1067


>gi|290974011|ref|XP_002669740.1| predicted protein [Naegleria gruberi]
 gi|284083291|gb|EFC36996.1| predicted protein [Naegleria gruberi]
          Length = 1143

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 54/242 (22%)

Query: 2   KQYHK-FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           + Y +  + E+   + G+        S       L N     +                 
Sbjct: 545 RVYTQYLKSEIVKQILGKKSNRSCIFSALSTLKMLCNHPRLNNGSAQILNKDVNEDEAFE 604

Query: 53  -------------------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ 85
                                      K++ +  ++++        ++   + + L  ++
Sbjct: 605 NFISEGDDKDYLDTSGMTCKELIEESSKLQIIVKLLKEHKKTGHRTLIFSQYKTMLDIVE 664

Query: 86  KAFPQ-----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +   +           G    +    +  +              S G GL L    + ++
Sbjct: 665 RIITEHLKLKTLRIDGGVAAKERQARVDLFQKNNMYSCFLLTTGSGGVGLTLTA-ADRVI 723

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                W+    QQ ++R       + G  + V  Y LI   T++E+V +R   K  +   
Sbjct: 724 LIDPHWNPAVDQQAVDR-----AYRVGQTKNVVTYRLITVGTLEEVVYRRQVIKDGLIKN 778

Query: 194 LL 195
            L
Sbjct: 779 TL 780


>gi|219122221|ref|XP_002181449.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407435|gb|EEC47372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 707

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 23/148 (15%)

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQ-----------------GRTLDKDPCTIQEWNEGK 108
              +  +V   F + L   +                           +D        +  
Sbjct: 547 RPGSKALVFSQFVNMLDLTRWRIHSDPCLADLGLGVRILHGGMDVKSRDATLQAFREDPS 606

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +L     + G  LNL    + +     WW+     Q I+R       + G  R +   
Sbjct: 607 VRVLLMSLKAGGVALNLT-VASEVYLLDNWWNPAAEMQAIDR-----THRLGQYRPIRAV 660

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             IA+ T++E VLQ    K  + D  + 
Sbjct: 661 RFIAEGTVEERVLQLQEKKRLVFDGTVG 688


>gi|183979219|dbj|BAG30707.1| decrease in DNA methylation 1 [Brassica rapa]
          Length = 767

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPII 72
             ++  +  N      +    +         LE I+ +                    ++
Sbjct: 492 LAIQLRKNCNHP----DLLVGQLDGSYLYPPLEDIVGQCGKFRLLERLLVRLFAKNHRVL 547

Query: 73  VAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  +   F +             L++    IQE+N+      +      + G
Sbjct: 548 IFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLEERRRQIQEFNDEKSNCRIFLLSTRAGG 607

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  + V VY L    +I+  V
Sbjct: 608 LGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRV 661

Query: 181 LQRLRTKSTIQDLLLN 196
           L+R  +K  ++ +++ 
Sbjct: 662 LKRAYSKLKLEHVVIG 677


>gi|297297256|ref|XP_002808499.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 2-like [Macaca mulatta]
          Length = 1806

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 20/161 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K+  L+ ++ +       +++       L  L +         +             
Sbjct: 767 SSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQ 826

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +  +N              + G G+NL    + +V F   W+ +      +     R  
Sbjct: 827 ALDHFNADGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARAH 880

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + G K+ V +Y L+ + T++E +++R + K  +  L++  +
Sbjct: 881 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRM 921


>gi|297834836|ref|XP_002885300.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331140|gb|EFH61559.1| hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 910

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 67/219 (30%), Gaps = 54/219 (24%)

Query: 24  NSASKTVKCLQLANGAVYYDE----------------------------------EKHWK 49
              +      +L N      +                                  +  W 
Sbjct: 471 KVLAYITALKKLCNHPKLIYDTIKSGSPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWV 530

Query: 50  EVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
           E+  +      ++  + +     I++  ++   L    +   +            T+ K 
Sbjct: 531 ELSGKMHVLSRLLANLRRKTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKR 590

Query: 98  PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +   N+             + G GLNL  G N LV F   W+        ++    R
Sbjct: 591 QKLVNRLNDPTKDEFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPAN-----DKQAAAR 644

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G K+ V+VY  ++  TI+E V QR  +K  +Q ++
Sbjct: 645 VWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 683


>gi|261200215|ref|XP_002626508.1| DNA repair protein RAD16 [Ajellomyces dermatitidis SLH14081]
 gi|239593580|gb|EEQ76161.1| DNA repair protein RAD16 [Ajellomyces dermatitidis SLH14081]
          Length = 948

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 786 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 845

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 846 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 899

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 900 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 934


>gi|66361996|ref|XP_627962.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
 gi|46227534|gb|EAK88469.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II]
          Length = 877

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
                 DL           ++ +    ++ +N+             + G G+NL  G N 
Sbjct: 543 FECLCRDLQVPCVRLDGSTSITRRHNLVKTFNDPNSNSFAFLLSSKAGGCGINL-IGANR 601

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV F   W+        ++  + R  + G K+  ++Y L +  TI+E + QR   K  + 
Sbjct: 602 LVMFDPDWNPAN-----DKQALARVWRDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLS 656

Query: 192 DLLLNA 197
            +L+ +
Sbjct: 657 AMLVTS 662


>gi|62484263|ref|NP_611885.3| CG4049 [Drosophila melanogaster]
 gi|61678334|gb|AAF47165.3| CG4049 [Drosophila melanogaster]
          Length = 1669

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    + E+N    + L      +   G+NL  G N ++ F   W+   
Sbjct: 1015 YFRLDGSTSSQERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNP-- 1071

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G  +  FVY ++    +++ +  R   K  + D +++    E
Sbjct: 1072 ---CHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVDECNPE 1126


>gi|260809914|ref|XP_002599749.1| hypothetical protein BRAFLDRAFT_205765 [Branchiostoma floridae]
 gi|229285031|gb|EEN55761.1| hypothetical protein BRAFLDRAFT_205765 [Branchiostoma floridae]
          Length = 1002

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKIP- 110
           +  +E  + K         +  N  L   +         G +       I ++N    P 
Sbjct: 646 LSLIEEFLAKTPMPEPPNGFPHNIPLRWAKNKTYYRLDGGTSGQDREKMINQFNVPNSPT 705

Query: 111 -LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            L      +   G+NL  G N +V F   W+            V R  + G  +   +Y 
Sbjct: 706 WLFLLSTRAGCLGVNL-VGANRVVVFDASWNPCHDC-----QAVCRVYRYGQTKPCHIYR 759

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           L+   ++++ +  R   K  + D +++ L+ E
Sbjct: 760 LVTDKSLEKKIYDRQVNKQGMSDRVVDELQPE 791


>gi|156839953|ref|XP_001643662.1| hypothetical protein Kpol_1040p17 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114282|gb|EDO15804.1| hypothetical protein Kpol_1040p17 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 797

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 32  CLQLANGAVYYDEEKHWKEV------HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
              L         +    E         EK+  L   I       ++V   F   L  L+
Sbjct: 591 LHTLCCNFPKTLSKYKLDEKAWANSGKVEKLCELLKDIISVKKEKVLVFSLFTQVLDILE 650

Query: 86  K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           K                 ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 651 KVLSSLNYKFLRLDGSTQVNDRQSLIDKFYEDDTIPIFILSTKAGGFGINL-VCANNVII 709

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   ++  +     +R    R  + G  + V +  LI +++I+E +LQ  + K  +   +
Sbjct: 710 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKILQLAKNKLDLDTHV 764

Query: 195 LNALKK 200
               KK
Sbjct: 765 SEDDKK 770


>gi|154291059|ref|XP_001546116.1| hypothetical protein BC1G_15417 [Botryotinia fuckeliana B05.10]
 gi|150847107|gb|EDN22300.1| hypothetical protein BC1G_15417 [Botryotinia fuckeliana B05.10]
          Length = 1110

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   + K    +   K+ AL  ++   K N   +++   F+  L  L+           
Sbjct: 869  CIKSFDVKKNAWMDSGKVSALVELVTKYKENGDRVLIFSQFSLVLDILESVLNTSMITYT 928

Query: 96   ---------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I+ + +   I        + G G+NL Y  N ++ F   ++ ++  
Sbjct: 929  RIDGATKIDERQSLIERFRDDTDITAFLLTTKAGGTGINLMY-ANKVIIFDGSFNPQD-- 985

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               +     R  + G  R V V  L+ + TI+E + +  R+K  +   +
Sbjct: 986  ---DVQAENRAHRVGQTRDVEVVRLVTRGTIEEAIWKMGRSKLMLDGRV 1031


>gi|115482344|ref|NP_001064765.1| Os10g0457700 [Oryza sativa Japonica Group]
 gi|113639374|dbj|BAF26679.1| Os10g0457700 [Oryza sativa Japonica Group]
          Length = 1319

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 91   GRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    ++ +N+    ++        +   G+NL    N ++     W+       
Sbjct: 1177 STPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINLHS-ANRVILLDGSWNPTH---- 1231

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KK 200
             +   + R  + G  + V+ Y L+A  T++E + +R  TK  +   +++         K+
Sbjct: 1232 -DLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKE 1290

Query: 201  ETIHV 205
            E +H+
Sbjct: 1291 EMLHL 1295


>gi|326435151|gb|EGD80721.1| serine/threonine protein kinase [Salpingoeca sp. ATCC 50818]
          Length = 4337

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             R         + ++    I ++N       ++     +   G+NL    N ++ F + W
Sbjct: 3835 NRDFVVLQGNDSAEERTEKIAKFNSALSNAAIMIISHRAGRAGINLHS-ANRVILFDVDW 3893

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +        +   +TR  + G K  V VY L+A+ T+++ + ++  TK  +   L++
Sbjct: 3894 NPAS-----DNQAITRAHRYGQKLPVVVYRLVARGTLEQRIYEKQVTKEVLSQRLVD 3945


>gi|311268976|ref|XP_003132292.1| PREDICTED: helicase ARIP4-like, partial [Sus scrofa]
          Length = 225

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 91  GRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                +    I ++N+       L      +   G+NL  G N +V F   W+       
Sbjct: 4   STPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNL-IGANRVVVFDASWNP-----C 57

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +   V R  + G K+   +Y L+A  T+++ +  R  +K  + D +++ L 
Sbjct: 58  HDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVDDLN 109


>gi|146419456|ref|XP_001485690.1| hypothetical protein PGUG_01361 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1103

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 26/207 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSAS---KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y  +  E   DL      A    +      + ++  NG     + +   E+ ++      
Sbjct: 881  YDGYDEEAIEDLFSPKSRAPEKFTSTDIISRLIEETNGFTPSTKIEKCIELVNQIRTKSL 940

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP 110
                      IIV   F +    ++            +    +LD    TI+ + +G   
Sbjct: 941  E-------EKIIVFSQFTTLFDLMKLVLDKKGIPFLRYDGSMSLDARNNTIKNFYQGLTQ 993

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     +   GL L    N ++    +W+       +E   + R  + G +R VFV+ +
Sbjct: 994  VLLISLRAGNVGLTLT-CANHVILMDPFWNP-----FVEEQAMDRAHRIGQQREVFVHRI 1047

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  +TI+  +++  + K  +    L+ 
Sbjct: 1048 LLNDTIEGRIMELQKYKKEMVQNALDE 1074


>gi|169854907|ref|XP_001834125.1| hypothetical protein CC1G_08756 [Coprinopsis cinerea okayama7#130]
 gi|116504825|gb|EAU87720.1| hypothetical protein CC1G_08756 [Coprinopsis cinerea okayama7#130]
          Length = 922

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPC 99
             K+  L   +          I    + S L            R  +   Q     ++  
Sbjct: 731 SAKMLKLVEYLKEWDDTGDKTICYSQWTSMLDLLEKLLSRHGIRTLRFDGQMDRAAREYA 790

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  G   ++         GLNL    N +V   L W+        E     R  + 
Sbjct: 791 ISSFKRAGGPKVMLISTRCGSVGLNL-VMANRIVNMDLSWNYAA-----ESQAYDRCHRI 844

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           G  + VFV  L+ +NTI+E +L+    K  + +  L       +H
Sbjct: 845 GQDKDVFVKRLVVENTIEERMLRLQDVKVGLAEAALGEGSGAKLH 889



 Score = 38.6 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 32/147 (21%), Gaps = 15/147 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA------FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y  F++     L     E              ++  Q+         +    +     
Sbjct: 361 EVYDSFEKSTKIRLNKFIRERTLLKNHAQVLVMILRLRQVCCHPHLVLSQAEGLDDPTAL 420

Query: 56  IK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI-------QEWNE 106
           ++  A + +         +       +      +       D+D             ++ 
Sbjct: 421 VQGNAEKELGRARKTMGPLWVADVKKEFLLRAASVESVDFSDEDDTAAPGCPVCGDVFSN 480

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILV 133
               +L      C   +     G I  
Sbjct: 481 DSGRVLSCKHEMCFDCMLNTRNGTITH 507


>gi|327352533|gb|EGE81390.1| DNA repair protein RAD16 [Ajellomyces dermatitidis ATCC 18188]
          Length = 983

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 821 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 880

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 881 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 934

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 935 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 969


>gi|322487766|emb|CBZ23007.1| putative DNA excision/repair protein SNF2 [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 927

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 39/206 (18%)

Query: 24  NSASKTVKCLQLANGAVY--YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA------- 74
           N         Q+ N       DE       H+     +  I +    A + VA       
Sbjct: 433 NPLLLLTMLSQICNHPWLSLLDETVAAALSHNPYKAPVAEIGDIFGGAKLWVALQLLLRC 492

Query: 75  --------------------YHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
                                    +              ++    ++ +N +  + +  
Sbjct: 493 VSEQRKTLVFSRSKSLLHLLSFLLREWRLTHTQVDGDTPSERRCAEVERFNKDAGVWVCL 552

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 G GL      + +V     W+        +   V R  + G +R V V+ L+  
Sbjct: 553 LTTQVGGVGLTF-NAASAVVLLDPSWNPSA-----DAQAVDRVHRIGQRRDVVVFRLVTC 606

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALK 199
            T++E V +    K       L ++K
Sbjct: 607 GTVEEKVYRNQIFKRM---AALQSMK 629


>gi|169616788|ref|XP_001801809.1| hypothetical protein SNOG_11569 [Phaeosphaeria nodorum SN15]
 gi|160703265|gb|EAT81277.2| hypothetical protein SNOG_11569 [Phaeosphaeria nodorum SN15]
          Length = 1535

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +     +    + D +      +I       + V   F +  
Sbjct: 1214 RQSIAFPDKRLLQYDCGKLQ----RLATLLRDLQAGGHRALIFTQMTKVLDVLEQFLNIH 1269

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1270 GHRYLRLDGSTKVEQRQILTDRFNSDDRILCFILSSRSGGLGINLT-GADTVIFYDLDWN 1328

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1329 PA-----MDKQCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1379


>gi|46123053|ref|XP_386080.1| hypothetical protein FG05904.1 [Gibberella zeae PH-1]
 gi|116090833|gb|ABJ55998.1| RING-11 protein [Gibberella zeae]
          Length = 1063

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L  +     +   I+   F + L  ++                 T  +   +I+ + 
Sbjct: 897  VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFM 956

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 957  NNVDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 1010

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +  L  +++++  ++     K+ +    +NA  K
Sbjct: 1011 CTITRLCIEDSVESRMVLIQEKKTNMIHSTVNADDK 1046


>gi|194886128|ref|XP_001976555.1| GG19952 [Drosophila erecta]
 gi|190659742|gb|EDV56955.1| GG19952 [Drosophila erecta]
          Length = 1717

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    + E+N    + L      +   G+NL  G N ++ F   W+   
Sbjct: 1056 YFRLDGSTSSQERERLVNEFNANSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNP-- 1112

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G  +  FVY ++    +++ +  R   K  + D +++    E
Sbjct: 1113 ---CHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVDECNPE 1167


>gi|290457487|emb|CBK19482.1| C. elegans protein Y116A8C.13b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 720

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 46/214 (21%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE-------------------------VHDEKIKAL 59
           + S      QLAN      +    K                              K+ AL
Sbjct: 350 ALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTAL 409

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE- 106
             +I+         ++  ++   L  +Q+                 +      ++ +N+ 
Sbjct: 410 VDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDH 469

Query: 107 -GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNL  G + LV F   W+    QQ + RI      + G  R  
Sbjct: 470 RDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW-----RDGQVRPC 523

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 524 HIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 556


>gi|159480254|ref|XP_001698199.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158273697|gb|EDO99484.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 797

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 42/225 (18%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI---- 62
            ++E     +       N   +  K  Q+ N               ++     + +    
Sbjct: 490 LKQEEMAR-ETRGRSLNNLIMQLRKVRQVCNHPDLITGAAS----DNQMYPPADELAAAC 544

Query: 63  -----------IEKANAAPIIVAYH-------------FNSDLARLQKAFPQGRTLDKDP 98
                        +A    +++                +  D               +  
Sbjct: 545 GKLALLERLLTRLRAGGHRVLIFSQVSQMTEMLNVLEAYLEDRGIPAARLDGSVPWQQRM 604

Query: 99  CTIQEWNEGKI------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE--HQQMIER 150
             I ++  G+        +      + G G+NL    + ++ +   W+  +         
Sbjct: 605 TDIADFQVGQSGTAAAKDVFLLSTRAGGLGINLTA-ADTVIIYDSDWNPHQDSQHPPPPP 663

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + R  + G  R V V+ L+  N++   +L R  +K  ++ +++
Sbjct: 664 QAMDRCHRIGQSRPVLVFRLVTANSVGCRMLARAESKKALERIVI 708


>gi|67624313|ref|XP_668439.1| DNA repair protein RAD54-like [Cryptosporidium hominis TU502]
 gi|54659648|gb|EAL38216.1| DNA repair protein RAD54-like [Cryptosporidium hominis]
          Length = 877

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
                 DL           ++ +    ++ +N+             + G G+NL  G N 
Sbjct: 543 FECLCRDLQVPCVRLDGSTSITRRHNLVKTFNDPNSNSFAFLLSSKAGGCGINL-IGANR 601

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV F   W+        ++  + R  + G K+  ++Y L +  TI+E + QR   K  + 
Sbjct: 602 LVMFDPDWNPAN-----DKQALARVWRDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLS 656

Query: 192 DLLLNA 197
            +L+ +
Sbjct: 657 AMLVTS 662


>gi|224371596|ref|YP_002605760.1| Helicase, Snf2 family [Desulfobacterium autotrophicum HRM2]
 gi|223694313|gb|ACN17596.1| Helicase, Snf2 family [Desulfobacterium autotrophicum HRM2]
          Length = 888

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           ++        ++   + N   Y  + +       +++  +   +   N   +++   + +
Sbjct: 563 MDIRRIQVLLLRMRMVCNS-TYLIDRETHISPKLKELDNIIDELVVQNRRKMVIFSEWTT 621

Query: 80  DLARLQKAFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYG 128
               + K                   K    I E+ N  +  +      + G GLNLQ  
Sbjct: 622 MTFLIAKHLSDMGIEFVELSGKVAVKKRQNLIDEFTNNPQCRVFL-STDAGGTGLNLQA- 679

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + +V F L W+  +  Q I R+    Q      + + V  LIA+N+I+E +L  ++ K+
Sbjct: 680 ADCVVNFELPWNPAKMNQRIGRVSRIGQA----SQCINVINLIAKNSIEERILAGIQLKT 735

Query: 189 TIQDLLLNA 197
            +   + + 
Sbjct: 736 DLFKGVFDD 744


>gi|242793561|ref|XP_002482189.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718777|gb|EED18197.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 938

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD--- 95
            DE +        KIKAL  I+    +      +V   + S L  ++             
Sbjct: 744 VDEAETDASAPSSKIKALIQILTAKGQVEQTKTVVFSQWTSFLDIIEPHLTANDICFTRI 803

Query: 96  --------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +D    +  N+ K  +L A    C  GLNL    N +V    WW        
Sbjct: 804 DGKLSSNKRDQAISEFTNDPKCTVLLASLNVCSVGLNLVA-ANQVVLCDSWWAPA----- 857

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           IE   + R  + G KR   V+ L+ + ++++ VL     K  +    L+ 
Sbjct: 858 IEDQAIDRVYRLGQKRETTVWRLVMEGSVEDRVLDIQAAKRELSSTALSE 907



 Score = 35.1 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 9/54 (16%)

Query: 1   MKQYHKFQRELYCDLQG---------ENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +K+Y  FQ E    L                 +     ++  Q+ N        
Sbjct: 591 LKKYEMFQAEARGMLDKYKHQVGGANGGTTYSHVLEIFLRLRQVCNHWCLCKNR 644


>gi|145353728|ref|XP_001421157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581393|gb|ABO99450.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1086

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 60   EVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NE 106
              +  + N      IV   + + +  ++    +             + +    +Q +  +
Sbjct: 923  RDMRNQENGHLNKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQAFRED 982

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              + ++     S G GLNLQ   N +     WW+            V R  + G  R V 
Sbjct: 983  PNVSVILMSLKSGGEGLNLQA-ANYVYVLEPWWNPAVEM-----QAVMRAHRIGQLRPVT 1036

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + TI+E +++    K  + +  ++ 
Sbjct: 1037 AVRFSTKGTIEERMMELQEKKQLVFEGCMDG 1067


>gi|145493367|ref|XP_001432679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399793|emb|CAK65282.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1021

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 74/210 (35%), Gaps = 28/210 (13%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIKALEVIIEK--AN 67
                 +  +  ++  ++      + E               +  K+K L++ ++K    
Sbjct: 388 GVTTQKSLMNILIQLRKICQHLYMFPELEDRDQPSLGEHLIENSGKLKVLDMFLKKLYNE 447

Query: 68  AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +I+   F S L                      ++     I+ +        +    
Sbjct: 448 NHKVILFSQFTSLLDILEDYLNYRKYKYCRLDGSTPIEVRDENIRNFQNPDSDLFIFLLS 507

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+ L    + ++ +   ++ +  Q       + R  + G K+ V VY LI Q+T
Sbjct: 508 TRAGGLGITLTA-ADTVIIYDSDFNPQLDQ-----QAMDRAHRIGQKKNVMVYRLICQST 561

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           ++E +++R + K   + ++++    + + +
Sbjct: 562 VEEKIIERQQIKLRWEQMIIDKGHSQMVGM 591


>gi|326520307|dbj|BAK07412.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1148

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 20/206 (9%)

Query: 9   RELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-- 65
            ++   ++G +++  N       K         +  E     E    KI  +  ++ K  
Sbjct: 747 EDILEGMEGMDVKLDNKDMGMVEKMAMNLADMAHDGEALQVDEEVSCKIIFIMSLLRKLL 806

Query: 66  ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFA 114
                ++V       L  +Q+                 + +    ++++ EG    +   
Sbjct: 807 EEGHHVLVFSQTRKMLNLIQEAILLEGYKFLRIDGTTKIAERERIVKDFQEGPGAQIFLL 866

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                G GL L      ++     W+     Q ++R       + G  + V VY L+   
Sbjct: 867 TTQVGGLGLTLTKAA-RVIVVDPAWNPSTDSQSVDR-----AYRIGQTKDVIVYRLMTSG 920

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           TI+E + +    K  +        ++
Sbjct: 921 TIEEKIYKMQVLKGALFRTATEQKEQ 946


>gi|224145438|ref|XP_002325643.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222862518|gb|EEF00025.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 719

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGA---------VYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYH 76
             ++  +               Y+            K + L+ ++ +       +++   
Sbjct: 439 LMIQLRKNCYHPDLLESAFDGSYFYPPVEQIVGKCGKFQLLDRLLNRLFALQHKVLIFSQ 498

Query: 77  FNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLN 124
           +   L  +   F               LD+    IQE+N+      +      + G G+N
Sbjct: 499 WTKILDIMDYYFSEKGFEVCRIDGSVKLDERKKQIQEFNDENSQFRIFLLSTRAGGLGIN 558

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  + V VY L    +++  +L+R 
Sbjct: 559 LTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLTTAQSVEGRILKRA 612

Query: 185 RTKSTIQDLLLN 196
            +K  ++ +++ 
Sbjct: 613 FSKLKLEHVVIG 624


>gi|254581362|ref|XP_002496666.1| ZYRO0D05346p [Zygosaccharomyces rouxii]
 gi|238939558|emb|CAR27733.1| ZYRO0D05346p [Zygosaccharomyces rouxii]
          Length = 1093

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 48   WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDK 96
             +    +K+  +   I       +++   F   L               +     +  D+
Sbjct: 913  MQSGKIDKLCEILHHIIVEKKEKVLIFSLFTQMLDILELVLSTLNYKFLRLDGSTQVNDR 972

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 + + + KIP+      + G G+NL    N ++ F   ++  +     +R    R 
Sbjct: 973  QSLIDKFYEDEKIPIFILSTKAGGFGINL-VCANNVIIFDQSFNPHD-----DRQAADRS 1026

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + G  + V +  L+ +++I+E + Q  + K  +   +    KK
Sbjct: 1027 HRVGQTKEVTITTLVTKDSIEEKIFQLAKNKLDLDFHVSEDDKK 1070


>gi|301100782|ref|XP_002899480.1| ATP-dependent helicase, putative [Phytophthora infestans T30-4]
 gi|262103788|gb|EEY61840.1| ATP-dependent helicase, putative [Phytophthora infestans T30-4]
          Length = 878

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 27/182 (14%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP 89
             QL        +      +   K   L  ++         +++   +   L  L+    
Sbjct: 677 LRQL--------QLPMETLLASAKFDYLRTLLPNLQKDGHRVLIFSQWTKLLDLLEVLMS 728

Query: 90  QGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           +    I  +N +  I +      + G G+NL    + ++   L 
Sbjct: 729 HMEYRYLRLDGSTDVQERQGLIDTYNEDKNIFVFLLSTRAGGLGINLTA-ADTVILHDLD 787

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++        +     R  + G  + V +Y L+++NT+D+ + +   +K+ +   +L+ L
Sbjct: 788 FNPTA-----DEQACDRCHRIGQTKPVSIYKLVSENTVDQDIYKLGESKTELNHKILDKL 842

Query: 199 KK 200
             
Sbjct: 843 NA 844


>gi|189198415|ref|XP_001935545.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187981493|gb|EDU48119.1| ISWI chromatin-remodeling complex ATPase ISW2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 916

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 41/222 (18%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------EEKHWKE 50
           R    ++    +      +  ++     N    +                   E      
Sbjct: 605 RAATFEIAKRQLMQKKLGNPIMQLRLCCNSPYNFFNPFIKADTDGTETFASETEPDETIV 664

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDP 98
               K+  L+ ++ +       +++   F + L  L                        
Sbjct: 665 STSGKMLLLDSLLPELIRRGHKVLIFSQFTTTLDLLGHYLDLRSWNYARIDGSVAQTDRQ 724

Query: 99  CTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             I  +N+         +      + G G+NL    + ++ F   W+ ++     +   +
Sbjct: 725 EQILAFNKPSTTKEAADIFILSTRAGGQGINL-AAADTVILFDSDWNPQQ-----DLQAM 778

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V VY    +NT+++ +L+    K  ++ L++
Sbjct: 779 DRAHRIGQTRNVIVYRFATRNTVEQKLLESAEAKRRLEKLVI 820


>gi|322790286|gb|EFZ15285.1| hypothetical protein SINV_14493 [Solenopsis invicta]
          Length = 647

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           KQY               ++  N      +   + N             +          
Sbjct: 388 KQYADITDRNRDFF--IEVKTQNRFMLYKR---IVNHPHLVHCPLDDVGLPKVDDDLIKS 442

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPC 99
             K+  L+ ++ K       +++       L  ++                     +   
Sbjct: 443 SGKLLVLDAMLAKLKVQGHKVLLFSTMTMILDLIEDYLTLRDYNYVRLDGSTAIETRKKN 502

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  N+    L      S G GLNL    + ++ +   W+ +      +   + R  + 
Sbjct: 503 INKFNNDPDTFLFLISTRSGGVGLNLMS-ADTVIIYDSDWNPQA-----DIQAMARCHRI 556

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V VY L  + TIDE +++R   K  ++ ++++
Sbjct: 557 GQTKPVVVYRLCTRGTIDEAIIKRAEGKRILEKMVIS 593


>gi|219362507|ref|NP_001136611.1| hypothetical protein LOC100216734 [Zea mays]
 gi|194696362|gb|ACF82265.1| unknown [Zea mays]
          Length = 356

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
             IV   +   L  L+ +        +              ++++N + ++ ++     +
Sbjct: 203 KAIVFSQWTGMLDLLELSLNINCIQYRRLDGTMSLNLREKNVKDFNTDPEVRVMIMSLKA 262

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   LWW+        E   V R  + G  R V V  L  ++T+++
Sbjct: 263 GNLGLNMVSACH-VILLDLWWNP-----YAEDQAVDRAHRIGQTRPVTVSRLTVKDTVED 316

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +L     K T+ +      K 
Sbjct: 317 RILALQEEKRTMVNSAFGDDKA 338


>gi|302813632|ref|XP_002988501.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
 gi|300143608|gb|EFJ10297.1| hypothetical protein SELMODRAFT_427193 [Selaginella moellendorffii]
          Length = 950

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 51  VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
               KI AL  ++EK          +V   F++ L  ++    +          G +  K
Sbjct: 773 KPSAKINALVSMLEKTRAKDPNIKSVVFSQFSTMLKLIEGPLQKAGFKFVKLEGGMSASK 832

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               ++ +     G   +      + G GLNL    + +     WW+       +E   +
Sbjct: 833 REENMEAFKSTRSGSPTVFLLSLKAAGVGLNLVT-ASNVFMMDPWWNPA-----VEEQAM 886

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  R V V+ LIA ++I+E +LQ    K     + L     E
Sbjct: 887 DRVHRLGQTRDVHVFRLIATDSIEERLLQVQEKKRAYAQIALGKEASE 934



 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 6/47 (12%)

Query: 3   QYHKFQRELY----CDLQGENIEAFNS--ASKTVKCLQLANGAVYYD 43
            Y K +++        L    +    +      ++  Q+ +      
Sbjct: 607 LYDKMEKDGRNMIRRFLDNGTVTKNYAVVLQMILRLRQICDHTSMCP 653


>gi|239607541|gb|EEQ84528.1| DNA repair protein RAD16 [Ajellomyces dermatitidis ER-3]
          Length = 948

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 786 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 845

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 846 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 899

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 900 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 934


>gi|155371796|ref|YP_001427330.1| hypothetical protein ATCV1_Z849R [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155125116|gb|ABT16983.1| hypothetical protein ATCV1_Z849R [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 456

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 68/216 (31%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAV----YYDEEKHWKEVH 52
           K Y     +           G++          ++  Q   G +    YYD+   + E  
Sbjct: 223 KAYTDTLDDGRAVFAAYGAYGDSQARMEVLKIILRLRQ-CTGNINMVPYYDDPDTFYEGE 281

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTI 101
             K+K +E  I  +     I+  HF+ ++  +                            
Sbjct: 282 STKLKMMEEDILNSPMQKTIIFTHFHKEMDYIAAMLKSHGFASVRLDGRVSAKGRISSVE 341

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+ +   L     + G GLNLQ     +   S+ W+        E   + R  + G 
Sbjct: 342 SFNNDPECNFLLVQIDAGGVGLNLQ-VAKRIYITSVHWN-----GTAEIQAIARSYRIGQ 395

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V V  LI  +T+D+ ++   + K      LL  
Sbjct: 396 DSQVTVKRLIINDTVDDAIVGIQQQKLECAAELLED 431


>gi|320164497|gb|EFW41396.1| stretch responsive protein 278 [Capsaspora owczarzaki ATCC 30864]
          Length = 958

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 24/180 (13%)

Query: 31  KCLQ--LANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK 86
           + L+  L+N  +   E          K+K L  ++   +AN   +++       L  ++K
Sbjct: 697 RLLKTFLSNSPLAVTETADT----SGKLKILLTLLQYYEANGDKVLIFCSSTRMLRIIEK 752

Query: 87  AFPQGRTL---------DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFS 136
                             +    + ++ + K          + G GLNL    N+++ F 
Sbjct: 753 IVMPRYNYLLLDGATSAMQRQVLVDKFQQDKSKFLFLISTRAGGVGLNLTA-ANVVIVFD 811

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+              R  + G  R V V  L++Q +I+E +  R   K  + ++ L 
Sbjct: 812 PSWNPASDM-----QAQDRAFRIGQLRDVAVNRLMSQASIEEQIYGRQVYKQHLGNMALE 866


>gi|302665258|ref|XP_003024241.1| hypothetical protein TRV_01591 [Trichophyton verrucosum HKI 0517]
 gi|291188288|gb|EFE43630.1| hypothetical protein TRV_01591 [Trichophyton verrucosum HKI 0517]
          Length = 1143

 Score = 83.3 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  +++    N   I+V   F                         +
Sbjct: 949  KNKEWMNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKTS 1008

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1009 VEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1062

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|325179496|emb|CCA13893.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1697

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 71/252 (28%), Gaps = 67/252 (26%)

Query: 2    KQYHKFQRELYCDLQGENI---------EAFNSASKTVKCLQLANGAVYYDEEKHWKEV- 51
            K Y   ++    +L   +I         +      +     ++          +  + + 
Sbjct: 1380 KLYQHIRQ---AELSNSSIRPLQTTSSHKIAGVFQQLQLLQKICIHPNLIISSQKHQHLN 1436

Query: 52   -----------------HDEKIKALEVIIEKANA------------------APIIVAYH 76
                             H  K  AL  ++  A                       ++  H
Sbjct: 1437 LLELVDTKTRSSMADWRHSGKFTALRDLLHDACGFSSDDNDQDETEPSLSPTHRCLIFSH 1496

Query: 77   FNSDLARLQKAFPQGRTLDK-------------DPCTIQEWNEGKIPLLFAHPASCGHGL 123
                L  ++  F +                            +  I +L    +  G GL
Sbjct: 1497 LQETLDYVEHMFEECFPRLTYTRLRSTLTNSVFHEKCRNFNEDPSIDILLLTTSIGGLGL 1556

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             L  G + ++F    W+       ++   + R  + G  ++V V+ LI QNT++E +L  
Sbjct: 1557 TLT-GADTVIFLEHSWNP-----FVDLQAMDRAHRLGQTKSVRVFRLIMQNTLEEEILNL 1610

Query: 184  LRTKSTIQDLLL 195
               K  +   ++
Sbjct: 1611 QSFKQQVASSVI 1622


>gi|256078496|ref|XP_002575531.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
 gi|238660772|emb|CAZ31764.1| chromodomain helicase DNA binding protein, putative [Schistosoma
           mansoni]
          Length = 1825

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 60/203 (29%), Gaps = 33/203 (16%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE-------------VHDEKIKALEVIIE--KANAAPIIV 73
            ++  +  N A          +                 K   L+ +++  K+    +++
Sbjct: 751 VMELKKCCNHAHLIAPPSEVDQQYLTKEDRLRSFLKGSGKGTLLDKLLQRLKSKGHRVLI 810

Query: 74  AYHFNSDLAR---------LQKAFPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGH 121
                  L                  G    +     +  +N              + G 
Sbjct: 811 FSQMVRMLDLIADYLSLRGWGFQRLDGSIRGEVRKQALDHFNCEGSTDFCFLLSTRAGGL 870

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL    + ++ F   W+ +      +     R  + G  + V VY  + + +++E ++
Sbjct: 871 GINL-ATADTVIIFDSDWNPQN-----DLQAQARAHRIGQTKQVSVYRFVTRESVEEKII 924

Query: 182 QRLRTKSTIQDLLLNALKKETIH 204
           +    K  +  L++  +    I 
Sbjct: 925 ESATRKMVLDHLVIQRMDSAGIR 947


>gi|119176940|ref|XP_001240322.1| hypothetical protein CIMG_07485 [Coccidioides immitis RS]
 gi|303316255|ref|XP_003068132.1| DNA repair protein RAD16, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107808|gb|EER25987.1| DNA repair protein RAD16, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 927

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++    +            T  +   +I  + N  ++
Sbjct: 765 KLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQRQKSIDYFMNNVEV 824

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 825 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITK 878

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 879 LCIEDSVESRMVLLQEKKANMINGTINKDQSEALE 913


>gi|169806094|ref|XP_001827792.1| SWF-SNF family helicase [Enterocytozoon bieneusi H348]
 gi|161779078|gb|EDQ31104.1| SWF-SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 823

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
           +  K+K L+ ++ + N     +++ +     +   ++   +             + +   
Sbjct: 666 NSGKLKVLDDLLVQLNKGNHRVLIYFQMTRMMDLFEEFLIEKQYSYLRLDGTCKVSQRKE 725

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  W    +  +      + G GLNL    + ++F+   W+       +++  + R  +
Sbjct: 726 LVNLWQNTDRHFIFMLSTRAGGVGLNLTA-ADTVIFYDSDWNPT-----VDQQAMDRVYR 779

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  + V VY LI + TI+E +++    K  +Q L++
Sbjct: 780 LGQTKDVTVYRLITKGTIEERIMEMAEKKGEMQKLVI 816


>gi|303280531|ref|XP_003059558.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459394|gb|EEH56690.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 553

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL             +     ++++N G    ++     + G GLNL  G + L+ F  
Sbjct: 446 RDLGLPADRLDGRVPPNARSGLVRDFNRGSGGRVMLLSCVAGGAGLNL-VGASRLILFDT 504

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            W+        +R  + R  + G  R V +Y L+A  T++E V QR   K  
Sbjct: 505 SWNPAH-----DRQAMARVWRDGQTRPVTIYRLLAAGTVEEKVFQRQLMKHK 551


>gi|294867966|ref|XP_002765317.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239865330|gb|EEQ98034.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 1182

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
            D  I  +  +  +   A  +V   F   L   Q                  L      I+
Sbjct: 1011 DALITRVLEMRRQDPNAKGLVFSCFVKLLELSQYHLKARGISTFIIHGSIPLAVRTRIIR 1070

Query: 103  EW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +         LL    ++ G GLNLQ   + +     WW+       +E+  + R  + 
Sbjct: 1071 AFIESPASDCSLLLVSISAGGEGLNLQR-ASHVFILDPWWNPA-----VEKQAIQRCHRL 1124

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G ++ V  ++LI++NTI+E +      K  I D  +  
Sbjct: 1125 GQQQIVRSHHLISENTIEERIKALQEKKQLIFDGTIGG 1162


>gi|58262112|ref|XP_568466.1| hypothetical protein CNM01240 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134118355|ref|XP_772191.1| hypothetical protein CNBM1100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254799|gb|EAL17544.1| hypothetical protein CNBM1100 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230639|gb|AAW46949.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 842

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 53  DEKIKALEVIIEKA-----NAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDK 96
             KI+ L  ++ +      N    IV   F S L               +     R   +
Sbjct: 636 SAKIRMLLKLLSEIDEKSGNKEKTIVFSQFTSFLDLVEPFLKENNIKYVRYDGSMRNDHR 695

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +  ++ K  ++     +   GLNL    N ++   LWW+        E     R 
Sbjct: 696 QVSLAKIRDDPKTRVILISFKAGSTGLNLT-CCNNVILMDLWWNPAL-----EDQAFDRA 749

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G K  V ++ L  + T+++ +L    +K  + +  L+    + +
Sbjct: 750 HRLGQKLDVNIWKLTIEETVEDRILILQNSKRELANAALSGQTGKGV 796


>gi|325179497|emb|CCA13894.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1696

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 71/252 (28%), Gaps = 67/252 (26%)

Query: 2    KQYHKFQRELYCDLQGENI---------EAFNSASKTVKCLQLANGAVYYDEEKHWKEV- 51
            K Y   ++    +L   +I         +      +     ++          +  + + 
Sbjct: 1379 KLYQHIRQ---AELSNSSIRPLQTTSSHKIAGVFQQLQLLQKICIHPNLIISSQKHQHLN 1435

Query: 52   -----------------HDEKIKALEVIIEKANA------------------APIIVAYH 76
                             H  K  AL  ++  A                       ++  H
Sbjct: 1436 LLELVDTKTRSSMADWRHSGKFTALRDLLHDACGFSSDDNDQDETEPSLSPTHRCLIFSH 1495

Query: 77   FNSDLARLQKAFPQGRTLDK-------------DPCTIQEWNEGKIPLLFAHPASCGHGL 123
                L  ++  F +                            +  I +L    +  G GL
Sbjct: 1496 LQETLDYVEHMFEECFPRLTYTRLRSTLTNSVFHEKCRNFNEDPSIDILLLTTSIGGLGL 1555

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             L  G + ++F    W+       ++   + R  + G  ++V V+ LI QNT++E +L  
Sbjct: 1556 TLT-GADTVIFLEHSWNP-----FVDLQAMDRAHRLGQTKSVRVFRLIMQNTLEEEILNL 1609

Query: 184  LRTKSTIQDLLL 195
               K  +   ++
Sbjct: 1610 QSFKQQVASSVI 1621


>gi|226289343|gb|EEH44855.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb18]
          Length = 899

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 737 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 796

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 797 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 850

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 851 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 885


>gi|222637121|gb|EEE67253.1| hypothetical protein OsJ_24412 [Oryza sativa Japonica Group]
          Length = 953

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  ++E   +A  IV   F S L  ++ +  +              ++K     
Sbjct: 785 DALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEKGKAID 844

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    +      + G  LNL    + +     WW+       +E     R  + G 
Sbjct: 845 TFTNDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VESQAQDRIHRIGQ 898

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +     + ++T++E +LQ    K  + +  +  
Sbjct: 899 FKPIRSMRFVIKDTVEERILQLQEKKRLVFEGTVGD 934


>gi|298710909|emb|CBJ49262.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1332

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 20/161 (12%)

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTI 101
             K+K+LE ++ K +     ++V     + L            + +      +  +    I
Sbjct: 875  GKMKSLETLLAKFHETRDKVLVFSWSTAMLDVLESFVGAKGYVYRRLDGTTSSKERQARI 934

Query: 102  QEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             E+N  +  + +      + G GLNL    + +V + + W+              R  + 
Sbjct: 935  NEFNSDRAGVFVFLISTRAGGQGLNLHT-ASRVVLYDVNWNPALGL-----QAQDRAYRI 988

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G KR V V+ LI++ TI+E+   R   K  I    +    +
Sbjct: 989  GQKRKVAVFRLISKGTIEEMCYMRQIYKLQITSAAMGDQAR 1029


>gi|322711766|gb|EFZ03339.1| SWI/SNF family DNA-dependent ATPase Ris1, putative [Metarhizium
           anisopliae ARSEF 23]
          Length = 783

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 65/189 (34%), Gaps = 23/189 (12%)

Query: 28  KTVKCLQLANGAVY--YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
           K+++     N   Y  Y        +   K+     ++ +        I+   +   L  
Sbjct: 582 KSLRLEAAKNHKAYKRYMTYLRKTWMPAAKVTECMKLLREIRETGEKTIIFSQWTLLLDL 641

Query: 84  LQKAFPQ------------GRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130
           L+ A                 T ++     + + +  +  ++     +   GLNL    +
Sbjct: 642 LEVAMWHEQFPEKPIRYDGSMTGEERSKAAKAFRDLPECNVMLVSLRAGNAGLNLTA-AS 700

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++    +W+       IE   + R  + G  + V VY ++ Q T+++ ++     K  I
Sbjct: 701 RVIIMDPFWNP-----YIEMQAIDRTYRIGQPKEVEVYRILTQETVEDRIVALQNKKKEI 755

Query: 191 QDLLLNALK 199
            +  L+  +
Sbjct: 756 VEAALDETE 764



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 4   YHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKH 47
           Y + + +        L+  ++     N     ++  Q         +   
Sbjct: 342 YKQLEEKAQVVFSKYLREGSVGKNYSNILVLLLRLRQACCHPHLNLDVDD 391


>gi|196008026|ref|XP_002113879.1| hypothetical protein TRIADDRAFT_27056 [Trichoplax adhaerens]
 gi|190584283|gb|EDV24353.1| hypothetical protein TRIADDRAFT_27056 [Trichoplax adhaerens]
          Length = 871

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 33/219 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------- 52
           Y       +  L     +  + ++  ++  +  N              +           
Sbjct: 519 YKYILTRNFEALNSRGNKHVSLSNIVMELKKCCNHPYLIPSASEDAPTNIDGTYHLSPLV 578

Query: 53  --DEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDP 98
               K+  LE +++K       +++       L              +      + ++  
Sbjct: 579 QACGKLIVLEKMLKKLKETGNRVLIFSQMTKMLDILEDFLDGLNYEYERIDGSTSGNERQ 638

Query: 99  CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I ++N              + G G+NL    + ++ +   W+        +    +R 
Sbjct: 639 ALIDKFNAPNATQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRA 692

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 693 HRIGQSNKVMIYRFVTRFSVEERITQVAKKKMMLTHLIV 731


>gi|116197985|ref|XP_001224804.1| hypothetical protein CHGG_07148 [Chaetomium globosum CBS 148.51]
 gi|88178427|gb|EAQ85895.1| hypothetical protein CHGG_07148 [Chaetomium globosum CBS 148.51]
          Length = 969

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           +  L  +     +   I+   F + L  ++    +            T  +   +IQ + 
Sbjct: 803 VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLHRAGITTVMLDGSMTPAQRQASIQHFM 862

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + +      + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 863 TNVNVEVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 916

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  L  +++++  ++     K+ + +  +NA
Sbjct: 917 CTITRLCIEDSVESRMVLLQEKKTNMINSTINA 949


>gi|322492369|emb|CBZ27643.1| putative DNA repair protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1092

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAF----------P 89
             +      K +H  K+ A+   IEK      ++V   F   L   Q              
Sbjct: 911  IFARLDPQKPLHGTKLDAIANYIEKVPKDEKVVVFSQFGGMLDLTQYWLQRRSIRAVKLC 970

Query: 90   QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               TL +    +Q + +E  + ++     + G GLNLQ   N +V    WW+        
Sbjct: 971  GSLTLTQRQSVLQAFLHEQSVRVILISLKAGGEGLNLQ-VANHVVLTDPWWNPAVEM--- 1026

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V R  + G  R V     + +++++E ++     K  + +  ++ 
Sbjct: 1027 --QAVQRAHRIGQTRPVHAVRFVTEHSVEERMVDLQDKKMLVFEGTIDG 1073


>gi|114658983|ref|XP_001170738.1| PREDICTED: chromodomain helicase DNA binding protein 2 isoform 7
           [Pan troglodytes]
          Length = 1777

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 65/201 (32%), Gaps = 38/201 (18%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           KQY+K    R      +G         +  ++  +  N        +  +       +  
Sbjct: 726 KQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENER------ENG 779

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPA 117
           + I+ + +                           +     +  +N              
Sbjct: 780 QEILLRLDG----------------------SIKGEIRKQALDHFNADGSEDFCFLLSTR 817

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    + +V F   W+ +      +     R  + G K+ V +Y L+ + T++
Sbjct: 818 AGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQARAHRIGQKKQVNIYRLVTKGTVE 871

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E +++R + K  +  L++  +
Sbjct: 872 EEIIERAKKKMVLDHLVIQRM 892


>gi|328874980|gb|EGG23345.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 937

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 44  EEKHWKEVHDEKIKALEVII---EKANAAPIIVAYHFNSDLA----------RLQKAFPQ 90
             K ++  +  K++ ++ ++    K +   +++  ++   L                   
Sbjct: 619 NPKVFQPQYSGKLQFVDKLLAGIRKTSKDRVVIISNYTQTLTVLAGMMRTRGYEFFQLDG 678

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             ++D     +  +N+      +      + G GLNL  G N LV +   W+        
Sbjct: 679 STSVDNRQKMVDLFNDPSRNEFVFLLSSKAGGVGLNL-IGANHLVLYDPDWNPAN----- 732

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +   + R  + G K+ V +Y  ++  TI+E + QR  TK  +   ++  
Sbjct: 733 DLQAMARVWREGQKKVVSIYRTLSTGTIEEKIFQRQITKMALSTSVVEG 781


>gi|295661927|ref|XP_002791518.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
 gi|226280075|gb|EEH35641.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb01]
          Length = 910

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 748 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 807

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 808 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 861

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 862 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 896


>gi|224093501|ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222852831|gb|EEE90378.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1108

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEV 61
                 +   L  E++      +                E   ++E H     KI  +  
Sbjct: 710 EDLLEGMESMLNPEDVAVAEKLAM---------HVADVAERTDFQEKHDSISCKISFVLS 760

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK- 108
           +++        +++       L  +++                 +      + ++ EG  
Sbjct: 761 LLDNLIPEGHNVLIFSQTRKMLNLIEESLVSNGYEFLRIDGTTKVTDRAKIVDDFQEGNG 820

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+        G GL L    + ++     W+     Q ++R       + G K+ V VY
Sbjct: 821 APIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQKKDVVVY 874

Query: 169 YLIAQNTIDELVLQRLRTKSTIQ 191
            L+   T++E + ++   K  + 
Sbjct: 875 RLMTCGTVEEKIYRKQIFKGGLF 897


>gi|321251541|ref|XP_003192100.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
 gi|317458568|gb|ADV20313.1| DNA repair protein RAD16; Rad16p [Cryptococcus gattii WM276]
          Length = 1202

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQE 103
              ++ LE + ++   A  +V   F S L  ++            F    +  +   TI+E
Sbjct: 1025 AMLRQLEEMRQQDPKAKALVFSQFTSFLDLIETTLTKQGIRWLRFDGTMSQAQRASTIEE 1084

Query: 104  W--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +     +  +L     + G GLNL    N +     WW+    QQ I+R+      + G 
Sbjct: 1085 FGRKTNEPLILLISLKAGGVGLNLT-MANYVFLMDTWWNEAIEQQAIDRV-----HRLGQ 1138

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1139 NKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1173


>gi|301060130|ref|ZP_07200997.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300445642|gb|EFK09540.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 691

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 30/201 (14%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            R+    L   +    +   +  +  +L                H  K   L  ++ K +
Sbjct: 446 VRKTLLKLSRHDGVDSDLKKEMARLAKLC-----------DYVPHTSKTTRLLELL-KVS 493

Query: 68  AAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              ++V   F + L  +             F  G         ++ +  G  P++     
Sbjct: 494 GEKVLVFSRFTATLEEIARRLSEEKVAYSLFHGGMGAADKDRAVESFQNG-TPVMLCS-E 551

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G NLQ+   ++  F L W+  + +Q I RI      + G  R V VY L A NT +
Sbjct: 552 IGGEGRNLQFCATMVN-FDLPWNPMKIEQRIGRI-----HRIGQTRPVHVYNLCADNTAE 605

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
             +L+ L  +  + +L++  +
Sbjct: 606 HHILEVLDRRINLFELVIGEV 626


>gi|241954006|ref|XP_002419724.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223643065|emb|CAX41939.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1102

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 22/202 (10%)

Query: 12   YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--KHWKEVHDEKIKALEVII----EK 65
               +Q  ++   +         ++ +      E   +        KI     +I     K
Sbjct: 882  MLHIQKLDMSQVHKFCSQHYQHKIKSNQALIREFIKRDNGFESSAKIHKCVEMILDLFSK 941

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLLFAH 115
                 +IV   F S    +                          I+E+ +    +L   
Sbjct: 942  NPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIKEFYQSNKNVLLLS 1001

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   GL L    N ++    +W+       +E   + R  + G  R VFV+ ++   T
Sbjct: 1002 LRAGNAGLTLT-CANHVIIMDPFWNP-----FVEEQAMGRAHRIGQTREVFVHRVLIAGT 1055

Query: 176  IDELVLQRLRTKSTIQDLLLNA 197
            ++  +++   +K  + +  L+ 
Sbjct: 1056 VENRIMELQESKKHLINSALDE 1077



 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI-----KALE 60
           + Q+     L      A  + +  ++  Q    +   +  ++  +V D +          
Sbjct: 714 RVQKAAKKILGEHTKNAP-ALTLLLRLRQACCHSYLVEIGEYKAKVKDSEADASFSNFKL 772

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
                 N A  +         + +     +G   +   C +   N      L       G
Sbjct: 773 DWRSMVNNARDLKESAKQQVHSLIDALNGRGFDENTLACPVCFDNIDIESSLLI----FG 828

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
              ++   G    FF      EE  +   RIG  +  Q   K      YLI
Sbjct: 829 ECGHVICKGCCNTFFENCNVGEEDDESPYRIGECKDCQKTVKEHNITEYLI 879


>gi|156093697|ref|XP_001612887.1| helicase [Plasmodium vivax SaI-1]
 gi|148801761|gb|EDL43160.1| helicase, putative [Plasmodium vivax]
          Length = 1618

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 59/248 (23%)

Query: 3    QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIK 57
             Y + + + +  +     +I   +  +  ++  ++ N    + +E +  E       K +
Sbjct: 962  LYRQIEMKGFTQINRNDGSISNKSCQNMVMQLRKVVNHPYLFLQEYNIDEYLIKCSGKFE 1021

Query: 58   ALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
             L+ ++ K        ++       +  L                  +L +    I+++N
Sbjct: 1022 VLDRMLPKLLRFRHKTLIFSQMTKLMDVLCDYLDFRGHRFLRLDGNSSLHERRRIIEQFN 1081

Query: 106  ------------------------------------EGKIPLLFAHPASCGHGLNLQYGG 129
                                                  +  +      S   GLNLQ   
Sbjct: 1082 RVDGGSGEAGGAEDGSCAGDNPLHLADSPLGEPNGGHDETMIFMLSTRSGSLGLNLQT-A 1140

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++ F   ++  +     +   + R  + G K  V V+  I  + ++EL+ QR + K T
Sbjct: 1141 DTVIIFDSDFNPHQ-----DIQAMCRCHRIGQKNVVKVFRFITLSGVEELIFQRAQDKLT 1195

Query: 190  IQDLLLNA 197
            I D ++ A
Sbjct: 1196 INDKVIQA 1203


>gi|83770000|dbj|BAE60135.1| unnamed protein product [Aspergillus oryzae]
          Length = 774

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFN 78
            ++  + +              E       +  K   L  +++         II+  +FN
Sbjct: 396 LMELRKCSIHPYLLDDAIPDPYELGAHVITNSGKYIVLLKMVQHFVLERGRKIIIFSNFN 455

Query: 79  S----------------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                            D  R  +         ++       N+ +  +      + G G
Sbjct: 456 QALNLCEDLLLTIQKNGDPVRYVRLDGSTSNARRNLSIYLFQNDPRYMVFLISIRAGGEG 515

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + ++F    W+ +     + R    R  + G K  V ++ L ++ T++E + +
Sbjct: 516 LNLVS-SSTVIFLDEDWNPQ-----VMRQAEARVHRIGQKHPVRIFKLQSKGTVEEQISR 569

Query: 183 RLRTKSTIQDLLLNALKK 200
           R+  K+ +   ++  +  
Sbjct: 570 RIVKKAYVATKIMEDINA 587


>gi|304360695|ref|YP_003856826.1| putative helicase [Clostridium phage phiCTP1]
 gi|302495554|gb|ADL40334.1| putative helicase [Clostridium phage phiCTP1]
          Length = 570

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 20/210 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+     +  DL  +   + N  ++  +  Q+ +    Y      + +   K+  LE 
Sbjct: 361 KIYNSVLNSVKDDL-DKITTSNNPLAQLTRLRQVTD----YTGLVSERVLESAKLDRLEE 415

Query: 62  IIE--KANAAPIIVAYHF-------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           +I+   AN    I+  ++          L R   A+  G+  + D    +  N+    ++
Sbjct: 416 LIDTINANGKKTIIFSNWEKVTQEVKKRLIRFNPAYITGKVKNIDDEVQKFQNDDSCKII 475

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    + ++F    W+              R  + G    V +  L+ 
Sbjct: 476 IGTIGAMGTGLTLTA-ASYVIFLDEPWNRALKD-----QAEDRAYRIGTNSTVSIITLLC 529

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            NTID  V + ++ K    D+L++    + 
Sbjct: 530 NNTIDVKVHELVKQKGQYSDVLVDGKVNKM 559


>gi|262066952|ref|ZP_06026564.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379300|gb|EFE86818.1| SWF/SNF family helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 896

 Score = 82.9 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 20/193 (10%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAY 75
               + F       +   + +      E  + K +  +K   +E +IE   N   +++  
Sbjct: 697 QGTFDKFFVLQAINELRHIVSSP----ELDNNKIISSKKEVLIENVIEAIENNHKVLIFV 752

Query: 76  HFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++ S +          +++     G+T D+     +  ++ +  +      + G GLNL 
Sbjct: 753 NYLSSIESICNSLKENKIKFLKMTGQTKDRQSLVDKFQSDDRYKVFVMTLKTGGVGLNLV 812

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + +  +  WW+     + +E   + R  + G  + VF Y +I +NTI+E +L+    
Sbjct: 813 S-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEI 866

Query: 187 KSTIQDLLLNALK 199
           K  + D L++   
Sbjct: 867 KDKLLDDLISEDN 879


>gi|328868273|gb|EGG16651.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1147

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ--------- 90
             +   + +      K + L  +I +      I+V       L  L+  F           
Sbjct: 942  KFIIPEEFISQSSAKCQKLVELINQHKDKSKILVFSQMTRVLDILEDVFDHVGLEFTRLD 1001

Query: 91   -GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                + +    I  + N   I +      + G G+NL    NI++F+ + ++ +     +
Sbjct: 1002 GSTPVTERQDIIDHFTNTDDIRVFLLSTLAGGLGINL-ISANIVIFYDMSFNPQ-----V 1055

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +R    R  + G  + V VY LI   ++D  +L    +K  + D +L  
Sbjct: 1056 DRQAEDRAHRLGQTKEVTVYKLITNGSVDNYMLDLSNSKKRLNDSMLEE 1104


>gi|239609713|gb|EEQ86700.1| DNA excision repair protein [Ajellomyces dermatitidis ER-3]
          Length = 1026

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     K+    +    +N   ++V  H    L  LQ  F    
Sbjct: 595 RQLYATRDSILNYANHEFCGKWKVLKKLLRWWHSNGDKVLVFSHSVRLLKMLQMLFKHTS 654

Query: 91  --------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + D     +  +N + +  +      + G GLN+    N +V     W+ 
Sbjct: 655 YNVSYLDGAMSYDDRTKAVDSFNADPREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 713

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 714 A-----YDLQAQDRAYRIGQSRDVEVFRLVSAGTIEEIVYARQIYKQQQAN 759


>gi|242010568|ref|XP_002426037.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510047|gb|EEB13299.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 853

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK--- 96
            E K  + V   K + L+ ++ K       +++   F   L    +    +G    +   
Sbjct: 657 YELKDEEFVKSGKFQKLDEMLPKLKEENHRVLIFSQFVIMLDVMEEYLRIRGHKYLRLDG 716

Query: 97  ------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +N +  I +      + G G+NL    + ++   + ++        +
Sbjct: 717 STQVIIRQELIDAFNEDSSIFVFILSTRAGGLGINLTA-ADTVIIHDMDFNP-----YND 770

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +    R  + G  + V VY  I +NTI+E + Q    K  ++  +
Sbjct: 771 KQAEDRCHRVGQTKPVSVYKFIGKNTIEENIHQVALEKLNLEKKI 815


>gi|168015457|ref|XP_001760267.1| SNF2 superfamily RAD5 protein [Physcomitrella patens subsp. patens]
 gi|162688647|gb|EDQ75023.1| SNF2 superfamily RAD5 protein [Physcomitrella patens subsp. patens]
          Length = 1031

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 19/167 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
               K+ AL   +E+   + A  +V   + + L  L+  F +            +  +   
Sbjct: 863  DSCKVNALMNELEELRPSGAKSVVFSQWTAFLDLLEIPFKRKKIKFVRLDGSLSQQQREK 922

Query: 100  TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++     I ++     + G G+NL    +       WW+    +Q I RI      +
Sbjct: 923  VLNDFRSQSDIMVMLISLKAGGVGINLTT-ASNAFLLDPWWNPAVEEQAIMRI-----HR 976

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             G  + V V   I + +++E +      K  +    LN  +     +
Sbjct: 977  IGQTKDVQVKRFIVKGSVEEKMQAVQARKQRMIAGALNNQEVRVARI 1023



 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 39/159 (24%), Gaps = 25/159 (15%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K + +    ++   +     +     ++  Q  +            +  D    A  
Sbjct: 704 LYKKSKTKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTADYADLDKLAKR 763

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +  +           F  ++                   +Q   +G+ P+         
Sbjct: 764 FLKGEQEGLVNRPTKAFVEEVV----------------KDLQTGQKGECPICLESMEDAV 807

Query: 121 HGLNLQYGGNIL---VFFSLWWDLEEHQQMIERIGVTRQ 156
               L    + L     F+ W         I R  +TRQ
Sbjct: 808 ----LTPCAHRLCRDCLFASWRSYGGGPCPICRQTLTRQ 842


>gi|14140291|gb|AAK54297.1|AC034258_15 putative helicase [Oryza sativa Japonica Group]
          Length = 1492

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 91   GRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 +    ++ +N+    ++        +   G+NL    N ++     W+       
Sbjct: 1193 STPSSERQNLVERFNDPENIRVKCTLISTRAGSLGINLHS-ANRVILLDGSWNPTH---- 1247

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KK 200
             +   + R  + G  + V+ Y L+A  T++E + +R  TK  +   +++         K+
Sbjct: 1248 -DLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKE 1306

Query: 201  ETIHV 205
            E +H+
Sbjct: 1307 EMLHL 1311


>gi|307202701|gb|EFN82007.1| Lymphoid-specific helicase [Harpegnathos saltator]
          Length = 587

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 62/186 (33%), Gaps = 28/186 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++ N             +            K+  L+ ++ K  A    +++       L
Sbjct: 345 KKIVNHPYLIQCPLDSIGLPKVDDDLIKSSGKLLVLDAMLAKLKAQGHKVLLFSTMTMIL 404

Query: 82  ARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             ++                     +        N   I L      + G GLNL    +
Sbjct: 405 DIIEDYLSLRDYKYLRLDGNDNIELRKRNIDNFNNNKDIFLFLISIRAGGIGLNL-AAAD 463

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +     ++   + R  + G  + V +Y L  + TIDE ++ R  +K  +
Sbjct: 464 TVIIYDSDWNPQ-----VDIQAMARCHRIGQTKPVVIYKLCTKGTIDEAIINRSESKRIL 518

Query: 191 QDLLLN 196
           + ++++
Sbjct: 519 EKMVIS 524


>gi|225682156|gb|EEH20440.1| RING-11 protein [Paracoccidioides brasiliensis Pb03]
          Length = 841

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 679 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRVGFNTVMLDGSMTPAQRQKSIEHFMNNVDV 738

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 739 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 792

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ +    +N  + E + 
Sbjct: 793 LCIEDSVESRMVLLQEKKANMIRGTINKDQSEALE 827


>gi|70954393|ref|XP_746245.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56526791|emb|CAH81164.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 1024

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 47/236 (19%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIKA 58
            Y + + + +  +     +   +  +  ++  ++ N    +    +          K + 
Sbjct: 637 LYKQIEEKTFKQVNSDGTVNTKSFQNTIMQLRKIVNHPFLFTNNYDINDCIIKSSGKFEV 696

Query: 59  LEVIIEK--ANAAPIIVAYHFNS---------DLARLQKAFPQGRTL-DKDPCTIQEWNE 106
           L+ +I K       I++               +L R +     G          I  +NE
Sbjct: 697 LDRMIPKLIKFKHKILLFCQMTRVMDILCDYFELRRYKYHRLDGSVSLSDRRQIIDNFNE 756

Query: 107 GKI-------------------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            K                           +      S G GLNLQ   + ++ F   ++ 
Sbjct: 757 PKSVNNCKEIDQNDINDLSNQELDTDEAMIFILSTRSGGLGLNLQA-ADTVIIFDSDFNP 815

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     +   + R  + G K  V V+  I  ++++ELV QR + K  I D ++ A
Sbjct: 816 HQ-----DIQAMCRCHRIGQKNVVKVFRFITLSSVEELVFQRAKDKLNINDKVIQA 866


>gi|261205042|ref|XP_002627258.1| SNF2 family protein [Ajellomyces dermatitidis SLH14081]
 gi|239592317|gb|EEQ74898.1| SNF2 family protein [Ajellomyces dermatitidis SLH14081]
          Length = 945

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
           K+ + +H  K+  L  ++   K N    +V   F             L           +
Sbjct: 732 KNDEWMHSGKVDKLCELLTRFKENGDRTLVFSQFTMVMDILEHVLQTLQMRFFRLDGSTS 791

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++    T+  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 792 VEDRQSTLDAFHEQVDIPVFLLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDVQA 845

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  RAV V  L+ ++TI+E +    +TK  +   +
Sbjct: 846 ENRAHRVGQTRAVEVVRLVTRDTIEEQMYALGQTKLALDQRV 887


>gi|330922513|ref|XP_003299868.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
 gi|311326280|gb|EFQ92036.1| hypothetical protein PTT_10956 [Pyrenophora teres f. teres 0-1]
          Length = 916

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 41/222 (18%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------EEKHWKE 50
           R    ++    +      +  ++     N    +                   E      
Sbjct: 605 RAATFEIAKRQLMQKKLGNPIMQLRLCCNSPYNFFNPFIKADTDGTETFASETEPDETIV 664

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDP 98
               K+  L+ ++ +       +++   F + L  L                        
Sbjct: 665 STSGKMLLLDSLLPELIRRGHKVLIFSQFTTTLDLLGHYLDLRSWNYARIDGSVAQTDRQ 724

Query: 99  CTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             I  +N+         +      + G G+NL    + ++ F   W+ ++     +   +
Sbjct: 725 EQILAFNKPSTTKEAADIFILSTRAGGQGINL-AAADTVILFDSDWNPQQ-----DLQAM 778

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V VY    +NT+++ +L+    K  ++ L++
Sbjct: 779 DRAHRIGQTRNVIVYRFATRNTVEQKLLESAEAKRRLEKLVI 820


>gi|294782979|ref|ZP_06748305.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481620|gb|EFG29395.1| Snf2 family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 896

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 77/193 (39%), Gaps = 20/193 (10%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAY 75
               + F       +   + +      E  + K +  +K   +E +IE   N   +++  
Sbjct: 697 QGTFDKFFVLQAINELRHIVSSP----ELDNNKIISSKKEVLIENVIEAIENDHKVLIFV 752

Query: 76  HFNSDL---------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++ S +          +++     G+T D+     +  ++ +  +      + G GLNL 
Sbjct: 753 NYLSSIESICNSLKENKIKFLKMTGQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNLV 812

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + +  +  WW+     + +E   + R  + G  + VF Y +I +NTI+E +L+    
Sbjct: 813 S-ADTIFIYDPWWN-----KTVENQAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEI 866

Query: 187 KSTIQDLLLNALK 199
           K  + D L++   
Sbjct: 867 KDKLLDDLISEDN 879


>gi|298715262|emb|CBJ27911.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1021

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN 105
            +++L  +    N    +V   F S L  +Q                 T  +    ++ + 
Sbjct: 845  LQSLHELRRSGNGDKAVVFSQFTSFLDVIQPFLLADGFRLARLDGSMTNKQRQAELKRFA 904

Query: 106  E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                    ++ A   + G G+NL    N       WW+       +E   + R  + G  
Sbjct: 905  GKGGDGAEVMLASLMAAGTGINLTS-ANHCFIADPWWNAS-----VESQAMDRVHRIGQT 958

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + V V  +++ +++++ +L+    K  +    L  LK + + 
Sbjct: 959  KPVRVVRMVSADSVEDRILEIQEAKEALGKGALRKLKPDEVR 1000


>gi|237739928|ref|ZP_04570409.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
 gi|229421945|gb|EEO36992.1| SWF/SNF family helicase [Fusobacterium sp. 2_1_31]
          Length = 896

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 20/185 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDL-- 81
                 +   + +      E  + K +  +K   +E +IE   N   +++  ++ S +  
Sbjct: 705 VLQAINELRHIVSSP----ELDNNKIISSKKEVLIENVIEAIENDHKVLIFVNYLSSIES 760

Query: 82  -------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                   +++     G+T D+     +  ++ +  +      + G GLNL    + +  
Sbjct: 761 ICNSLKENKIKFLKMTGQTKDRQSLVDKFQSDNRYKVFVMTLKTGGVGLNLVS-ADTIFI 819

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  WW+     + +E   + R  + G  + VF Y +I +NTI+E +L+    K  + D L
Sbjct: 820 YDPWWN-----KTVENQAIDRAYRLGQDKTVFAYKMIMRNTIEEKILKLQEIKDKLLDDL 874

Query: 195 LNALK 199
           ++   
Sbjct: 875 ISEDN 879


>gi|322696102|gb|EFY87899.1| DNA repair protein RAD16 [Metarhizium acridum CQMa 102]
          Length = 1097

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L  +     +   I+   F + L  ++                 T  +   +I+ + 
Sbjct: 931  VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPSQRQASIEHFM 990

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 991  NNVDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 1044

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +  L  +++++  ++     K+ +    +NA  K
Sbjct: 1045 CTITRLCIEDSVESRMVLIQEKKTNMIHSTVNADDK 1080


>gi|123445199|ref|XP_001311362.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121893168|gb|EAX98432.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1639

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 59/202 (29%), Gaps = 41/202 (20%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVH----------------------DEKIKALEVIIE--K 65
           ++  ++ N        +    +                         K+  ++ ++   K
Sbjct: 520 MELRKVCNHPYLITGAEDAILIEKMQQLGLKERTNEFELETLIRTSGKLILVDKLLANLK 579

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFA 114
                +++       L  LQ          +             +I ++ E   I +   
Sbjct: 580 KEGHRVLIFSQMTKMLDLLQDMLTYRNYKYRRIDGTVRGKDRQASIDDFQEQEDIFVFLL 639

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NL    +  + +   W+ +      +     R  + G  + V +Y LI +N
Sbjct: 640 CTRAGGVGINLTS-ADRCIIYDSDWNPQN-----DIQATARCHRIGQTKEVKMYRLITKN 693

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           + +  +      K  +   +L 
Sbjct: 694 SYERSMFDTASKKLGLDKAILE 715


>gi|15240074|ref|NP_201476.1| CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase [Arabidopsis
           thaliana]
 gi|75338558|sp|Q9XFH4|DDM1_ARATH RecName: Full=ATP-dependent DNA helicase DDM1; AltName:
           Full=Protein CHROMATIN REMODELING 1; Short=CHR01;
           AltName: Full=Protein DECREASED DNA METHYLATION 1;
           Short=AtDDM1; AltName: Full=Protein SOMNIFEROUS 1;
           AltName: Full=SWI/SNF2-related matrix-associated
           actin-dependent regulator of chromatin DDM1
 gi|4726079|gb|AAD28303.1|AF143940_1 SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|8843733|dbj|BAA97281.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|20466344|gb|AAM20489.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|25084090|gb|AAN72172.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
 gi|332010876|gb|AED98259.1| chromatin remodeling 1 [Arabidopsis thaliana]
          Length = 764

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPII 72
             ++  +  N      +    +         +E I+ +                N   ++
Sbjct: 489 LVIQLRKNCNHP----DLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVL 544

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  +   F               LD+    I+++++      +      + G
Sbjct: 545 IFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGG 604

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  + V VY L    +I+  V
Sbjct: 605 LGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRV 658

Query: 181 LQRLRTKSTIQDLLLN 196
           L+R  +K  ++ +++ 
Sbjct: 659 LKRAYSKLKLEHVVIG 674


>gi|58258561|ref|XP_566693.1| DNA repair protein RAD5 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|74687780|sp|Q5KPG8|RAD5_CRYNE RecName: Full=DNA repair protein RAD5
 gi|57222830|gb|AAW40874.1| DNA repair protein RAD5, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1198

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            ++ LE I ++   A  +V   F S L  ++            F    +  +   TI+E+ 
Sbjct: 1023 LRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFG 1082

Query: 105  -NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                +  +L     + G GLNL    N +     WW+    QQ I+R+      + G  +
Sbjct: 1083 RKTNEPLILLISLKAGGVGLNLT-MANYVFLMDTWWNEAIEQQAIDRV-----HRLGQNK 1136

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1137 PVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1169


>gi|225468254|ref|XP_002267456.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 848

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 22/202 (10%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANG-AVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           E       +   A        K      G +      +    + +      E ++++ + 
Sbjct: 638 ESRLYDSSKIRAALEVLQSLSKPRDCTLGNSSLKSSNETTSGLENLSDSHSEGLLKETS- 696

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPA 117
              IV   +   L  L+          +              ++++N   ++ ++     
Sbjct: 697 ---IVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLK 753

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T++
Sbjct: 754 AASLGLNMVAACH-VLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVLRLTVKDTVE 807

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           + +L   + K  +        +
Sbjct: 808 DRILALQQKKREMVASAFGEDE 829


>gi|15231009|ref|NP_188635.1| SNF2 domain-containing protein / helicase domain-containing protein /
            RING finger domain-containing protein [Arabidopsis
            thaliana]
 gi|11994776|dbj|BAB03166.1| transcription factor-like protein [Arabidopsis thaliana]
          Length = 1047

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
              I+   +   L  ++    +     +                +   +  + ++     +
Sbjct: 894  KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKA 953

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   + R  + G  R V V  +  ++T+++
Sbjct: 954  GNLGLNMVAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRITIKDTVED 1007

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +L+    K T+       
Sbjct: 1008 RILKLQEEKRTMVASAFGE 1026


>gi|327355372|gb|EGE84229.1| DNA excision repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1026

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     K+    +     N   ++V  H    L  LQ  F    
Sbjct: 595 RQLYATRDSILNYANHEFCGKWKVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 654

Query: 91  --------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + D     +  +N + +  +      + G GLN+    N +V     W+ 
Sbjct: 655 YNVSYLDGAMSYDDRTKAVDSFNADPREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 713

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 714 A-----YDLQAQDRAYRIGQSRDVEVFRLVSAGTIEEIVYARQIYKQQQAN 759


>gi|68485787|ref|XP_713174.1| hypothetical protein CaO19.9427 [Candida albicans SC5314]
 gi|46434654|gb|EAK94057.1| hypothetical protein CaO19.9427 [Candida albicans SC5314]
          Length = 1641

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQG 91
              +K   +    K++ L  ++++  +     ++       L            +     G
Sbjct: 1355 FPDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDG 1414

Query: 92   RTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +D   +  +   + KIP+      S G G+NL  G + ++F+   W+       ++
Sbjct: 1415 ATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPA-----MD 1468

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +    R  + G  R V +Y  +++ TI+  ++++   K  + ++++   +
Sbjct: 1469 KQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGE 1518


>gi|302812321|ref|XP_002987848.1| hypothetical protein SELMODRAFT_426581 [Selaginella moellendorffii]
 gi|300144467|gb|EFJ11151.1| hypothetical protein SELMODRAFT_426581 [Selaginella moellendorffii]
          Length = 437

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-----------AA 69
             F   S  ++  Q+ +       E  ++     +    E                    
Sbjct: 237 NRFKILSMLLRLRQMYDHPALLKSEDLFQGDDLGEDNDDEDQQHMRQALNLKKLQLEAQE 296

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
                     ++ +  K         ++    +   + ++ +L     + G GLNL    
Sbjct: 297 KQHDFERGVQEIGQSAKIDGSMNMTKREAEISRFNRDPEVMVLLLSLRAAGCGLNLVA-A 355

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++   +WW+        E   + R  +    R V V   + + +++E +L     K  
Sbjct: 356 SCVLLIDMWWNPTT-----EDQAIDRAHRIVQTRPVHVTKFMVKESVEEQILAIQEKKKK 410

Query: 190 IQD 192
           + +
Sbjct: 411 MVE 413


>gi|297812401|ref|XP_002874084.1| hypothetical protein ARALYDRAFT_489124 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297319921|gb|EFH50343.1| hypothetical protein ARALYDRAFT_489124 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1029

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDP 98
            V   KI AL   +E  +++ +  I+   + + L  LQ    +               +  
Sbjct: 860  VESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLNQQQRE 919

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++E+  +G I +L     + G G+NL    +       WW+       +E   V R  
Sbjct: 920  KVLKEFSEDGSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPA-----VEEQAVMRIH 973

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  ++V +   I + T++E +      K  +    L
Sbjct: 974  RIGQTKSVKIRRFIVKGTVEERMEAVQARKQRMISGAL 1011



 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 47/193 (24%), Gaps = 26/193 (13%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    +                    +     ++  Q  +            E  D    
Sbjct: 695 YDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTTEYSDLNKL 754

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +   +  K++             L R  K  P    + +    +++  +G+ P+      
Sbjct: 755 SKRFLSGKSSG------------LEREGKDVPSEAFVQEVVEELRKGEQGECPICL---- 798

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  L    + L      + W +       + R  V++Q              + +N
Sbjct: 799 EAFEDAVLTPCAHRLCRECLLASWRNSNTGLCPVCRKTVSKQELITAPTESRFQVDVEKN 858

Query: 175 TID-ELVLQRLRT 186
            ++   +   L  
Sbjct: 859 WVESSKITALLEE 871


>gi|70946126|ref|XP_742810.1| ATP-dependant helicase [Plasmodium chabaudi chabaudi]
 gi|56521995|emb|CAH89085.1| ATP-dependant helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 631

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 64/167 (38%), Gaps = 19/167 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                   +   K+ ALE ++   K      ++   F   L  L+               
Sbjct: 250 FPLNKDISLGSGKLFALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDG 309

Query: 91  GRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +++    + ++N  K   +  +   S   G+NL    N+++F+   W+       I+
Sbjct: 310 STKVEQRQKIVTKFNNDKSYFIFISSTRSGSIGINLTA-ANVVIFYDTDWNPS-----ID 363

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  + R  + G  + V V+  + + T++E + ++   K  + ++ +N
Sbjct: 364 KQAMDRCHRIGQTKDVHVFRFVCEYTVEENIWKKQLQKRKLDNICIN 410


>gi|320031638|gb|EFW13598.1| chromatin remodeling complex subunit Chd3 [Coccidioides posadasii
            str. Silveira]
          Length = 1534

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 41/232 (17%)

Query: 2    KQYH-------KFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G   +  E  N  +  V+  +       Y +    + V
Sbjct: 936  KLYKSILAKNPQLIKAIFKKTDGRSLKQSERHNLNNILVQLRKCLCHPFVYSKAIEERGV 995

Query: 52   HDEKIKALE-------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             D  +                 +   +     +++   F   L  ++             
Sbjct: 996  SDTLLYRNLVEASSKLQLLELLLPKLQERGHRVLLFSQFLDFLDIIEDFLDGLGVLHLRL 1055

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +  +    I E+N    P  +      + G G+NL    + ++     ++  +   
Sbjct: 1056 DGSLSSLQKQKRIDEFNAPNSPYFVFMLSTRAGGVGINL-ATADTVIIMDPDFNPHQ--- 1111

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +   ++R  + G  R V V+ L+ + T +E ++Q  R K  +   L+  +
Sbjct: 1112 --DIQALSRAHRIGQHRKVLVFQLMTKGTAEEKIIQIGRKKMALDQALIGFM 1161


>gi|121711213|ref|XP_001273222.1| DNA excision repair protein Rad16, putative [Aspergillus clavatus
           NRRL 1]
 gi|119401373|gb|EAW11796.1| DNA excision repair protein Rad16, putative [Aspergillus clavatus
           NRRL 1]
          Length = 842

 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +  K      IV   F S L  ++    +                +        N   +
Sbjct: 680 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQRSIDHFMNNVDV 739

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 740 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 793

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  LN  + E + 
Sbjct: 794 LCIEDSVESRIVLLQEKKANLINGTLNKDQGEALE 828


>gi|303312901|ref|XP_003066462.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106124|gb|EER24317.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1492

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 41/232 (17%)

Query: 2    KQYH-------KFQRELYCDLQG---ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            K Y        +  + ++    G   +  E  N  +  V+  +       Y +    + V
Sbjct: 894  KLYKSILAKNPQLIKAIFKKTDGRSLKQSERHNLNNILVQLRKCLCHPFVYSKAIEERGV 953

Query: 52   HDEKIKALE-------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
             D  +                 +   +     +++   F   L  ++             
Sbjct: 954  SDTLLYRNLVEASSKLQLLELLLPKLQERGHRVLLFSQFLDFLDIIEDFLDGLGVLHLRL 1013

Query: 91   --GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +  +    I E+N    P  +      + G G+NL    + ++     ++  +   
Sbjct: 1014 DGSLSSLQKQKRIDEFNAPNSPYFVFMLSTRAGGVGINL-ATADTVIIMDPDFNPHQ--- 1069

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              +   ++R  + G  R V V+ L+ + T +E ++Q  R K  +   L+  +
Sbjct: 1070 --DIQALSRAHRIGQHRKVLVFQLMTKGTAEEKIIQIGRKKMALDQALIGFM 1119


>gi|323508282|emb|CBQ68153.1| related to helicase-dna-binding protein [Sporisorium reilianum]
          Length = 2273

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 75/241 (31%), Gaps = 47/241 (19%)

Query: 2    KQYHKFQRELYCDL------------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK 49
            + Y         D+            +G+     N  +  ++  +          +   +
Sbjct: 1247 RIYRSILESNIEDIQALAASREKGAKKGQKSTITNLNNTLMQLRKCIQHPYLIAPDLETR 1306

Query: 50   EVH---------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR 92
            E                   K+  L+ ++ K  A    +++   F  +L  ++       
Sbjct: 1307 EGEANYEATWEHQRLIDASAKLSLLQRLLPKLKAEGHRVLLFSQFVINLDIVEVFLRGEG 1366

Query: 93   T----------LDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    I  +N    P         + G G+NL    + ++     ++
Sbjct: 1367 YKFLRLDGAIGQKQRQKGIDAFNAPDSPYFIYMISTRAGGVGINL-ATADTVIIMDPDFN 1425

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                   ++   + R  + G  + + V+ L+ + T +E +++  + K  +  L++  L K
Sbjct: 1426 P-----HVDMQAIARAHRIGQTKKLLVFTLMCKATAEERMIESAKRKMMLDHLIVQNLDK 1480

Query: 201  E 201
            E
Sbjct: 1481 E 1481


>gi|296448804|ref|ZP_06890651.1| helicase domain protein [Methylosinus trichosporium OB3b]
 gi|296253690|gb|EFH00870.1| helicase domain protein [Methylosinus trichosporium OB3b]
          Length = 949

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 16/182 (8%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
             + + C+++        +         E+++ +   +       +IV   +   L  ++
Sbjct: 513 LQQLLACMRMVCDTPAILDPTCRISPKLEELEKILADLLDEPERKVIVFSEWERMLTMVR 572

Query: 86  K----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +                  ++    I  +       LF    S   GLNLQ   + +V  
Sbjct: 573 ELAGEMGVEAAWHTGSLPQERRRAEINRFKRDPACRLFFSTDSGSVGLNLQ-VASAVVNV 631

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+  + +Q I R       +    R+V V  L+ + +I+  +L  +  K  + D +L
Sbjct: 632 DLPWNPAKLEQRIAR-----AWRKNQPRSVSVVNLVTEGSIEHSILHLIGQKQALADGVL 686

Query: 196 NA 197
           + 
Sbjct: 687 DG 688


>gi|134106523|ref|XP_778272.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50260975|gb|EAL23625.1| hypothetical protein CNBA2720 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1198

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 18/153 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            ++ LE I ++   A  +V   F S L  ++            F    +  +   TI+E+ 
Sbjct: 1023 LRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFG 1082

Query: 105  -NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                +  +L     + G GLNL    N +     WW+    QQ I+R+      + G  +
Sbjct: 1083 RKTNEPLILLISLKAGGVGLNLT-MANYVFLMDTWWNEAIEQQAIDRV-----HRLGQNK 1136

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+V   I + T+++ +++  R+K+ + +  L+
Sbjct: 1137 PVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS 1169


>gi|332019436|gb|EGI59920.1| Lymphoid-specific helicase [Acromyrmex echinatior]
          Length = 690

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 64/186 (34%), Gaps = 28/186 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++ N         +   +            K+  L+ ++ K       +++       L
Sbjct: 457 KKIVNHPYLVHCPLNSTGLPKIDTDLIRSSGKLLVLDAMLAKLKMRGHKVLLFSTMTMIL 516

Query: 82  ARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             ++                     +        N+  + L      + G GLNL  G +
Sbjct: 517 DMIEDYLTLRDYNYVRLDGATKIEARKQNIAAFNNDPDLFLFLISIRAGGVGLNL-MGAD 575

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +     ++   + R  + G  + V VY L  + TIDE +++R   K  +
Sbjct: 576 TVIIYDSDWNPQ-----VDIQAMARCHRIGQTKPVVVYKLCTKGTIDEAIMKRADAKRIL 630

Query: 191 QDLLLN 196
           + ++++
Sbjct: 631 EKIVIS 636


>gi|291244998|ref|XP_002742381.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1-like [Saccoglossus kowalevskii]
          Length = 1082

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 32   CLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
               L N            E  ++  K   L+ ++ +       +++   F   L  ++  
Sbjct: 888  LHGLCNQYYSISSFTLPTETLLNSGKFYKLDSLLPEMKQRGDRVLLFSQFTMMLDIIEVY 947

Query: 88   FPQGR----------TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFS 136
                +           + +    I ++N    I +      + G G+NL    N+++   
Sbjct: 948  MQYHKHKYLRLDGQTPVQERLQLIDKYNNDNGIFVFLLSTKAGGLGINLTS-ANVVIIHD 1006

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + ++        ++    R  + G  R V V  LI +NTI+E +L+    K  ++  +
Sbjct: 1007 IDFNP-----YNDKQAEDRCHRVGQTRDVTVIRLICENTIEEAMLKCAMGKLKLEADI 1059


>gi|67594179|ref|XP_665781.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis TU502]
 gi|54656607|gb|EAL35548.1| RAD26-like dna repair and recombination protein [Cryptosporidium
           hominis]
          Length = 822

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +      I L        G GLN+  G N ++ +  WW+        +     R  + 
Sbjct: 424 VKRFNQNQSIFLFILTSRVGGVGLNIT-GANRVILYDPWWNPMT-----DVQAKERCWRI 477

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V VY LI ++TI+E + QR   K  I   +L   K +
Sbjct: 478 GQKKEVIVYRLITRDTIEEKIFQRQLFKEFIAKQILKDPKSQ 519


>gi|326475388|gb|EGD99397.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1143

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  +++    N   I+V   F                         +
Sbjct: 949  KNKEWMNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKTS 1008

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1009 VEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1062

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|296413962|ref|XP_002836675.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630508|emb|CAZ80866.1| unnamed protein product [Tuber melanosporum]
          Length = 870

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 22/161 (13%)

Query: 52  HDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
           H  K + LE ++          I++  ++ S L  LQ                   +K  
Sbjct: 552 HSGKFRVLERLLLALRNTTDEKIVLVSNYTSTLDLLQNLLRSRGLSYLRLDGTTPTNKRQ 611

Query: 99  CTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             + ++N               S G GLNL  G + L  F L W+        +   + R
Sbjct: 612 ELVDQFNRTNSTTAFAFLLSAKSGGAGLNL-IGASRLALFDLDWNPAT-----DAQAMAR 665

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G +R V +Y ++     DE + QR  TK  + D +++
Sbjct: 666 IHRDGQRREVKIYRMLTTGCFDEKIYQRQLTKIGLADSVMD 706


>gi|296083594|emb|CBI23583.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             E +  LE I +       IV   + S L  L+            +       +    ++
Sbjct: 1028 SELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILK 1087

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E++E +   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 1088 EFSETEEKTVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI-----HRIGQ 1141

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +R V V   I ++T++E + Q    K  +    L   +  T  +
Sbjct: 1142 ERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARI 1185



 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 3/53 (5%), Positives = 9/53 (16%), Gaps = 6/53 (11%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           Y    +                    +     ++  Q  N           ++
Sbjct: 858 YDALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCNHPFLVMSRGDTQQ 910


>gi|156838524|ref|XP_001642966.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113549|gb|EDO15108.1| hypothetical protein Kpol_1071p14 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 353

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 35/204 (17%)

Query: 21  EAFNSASKTVKCLQLANGAVYY--------------DEEKHWKEVHDEKIKALEVIIEK- 65
              +S        ++ N                    + K+ +EV   K+K L  +++  
Sbjct: 8   TFNSSLGLITLFKKICNSPTLISSDSYFQSKIKQSGTDSKYNREVDSGKLKVLSELLKSI 67

Query: 66  ---ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPL 111
              +N   +++  ++   L  ++K                   +    +  +N    +  
Sbjct: 68  TQISNKEKVVIVSNYTQTLDIIEKMLHSLSLSFTRLDGSTPNRQRDSIVSLFNRSPHVFA 127

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 S G GLNL  G + L+ F   W+       I+   ++R  + G KR  F+Y L+
Sbjct: 128 FLLSAKSGGVGLNL-IGASRLILFDNDWNPA-----IDLQAMSRIHRDGQKRPCFIYRLV 181

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
               IDE +LQR   K ++    L
Sbjct: 182 TTGCIDEKILQRQLMKHSLSKKFL 205


>gi|238883647|gb|EEQ47285.1| helicase SWR1 [Candida albicans WO-1]
          Length = 1641

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQG 91
              +K   +    K++ L  ++++  +     ++       L            +     G
Sbjct: 1355 FPDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDG 1414

Query: 92   RTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +D   +  +   + KIP+      S G G+NL  G + ++F+   W+       ++
Sbjct: 1415 ATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPA-----MD 1468

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +    R  + G  R V +Y  +++ TI+  ++++   K  + ++++   +
Sbjct: 1469 KQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGE 1518


>gi|217076139|ref|YP_002333855.1| helicase [Thermosipho africanus TCF52B]
 gi|217035992|gb|ACJ74514.1| helicase [Thermosipho africanus TCF52B]
          Length = 835

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 27/190 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF------ 77
               +K LQ+ +     D        H  K+  L+ ++ +        ++   F      
Sbjct: 637 LGLAIKLLQVCD--FGADYFDENFYKHSGKLNKLKDLMIEIKNKKEKALIFTKFIMTQQI 694

Query: 78  -----NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                 ++L    +       ++     ++++N+GKI +L  +P   G GLNL    N +
Sbjct: 695 IKAFLRNELGIESEILNGTVPIETRNYIVKQFNDGKIDVLIINPRVGGVGLNLVA-ANHV 753

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRT 186
           + ++  W+              R  + G  + V+VYY  ++       TI+E  ++ L  
Sbjct: 754 IHYTPEWNPAVTS-----QATDRAYRIGQDKDVYVYYFFSKFRNNHNKTIEEYFMKLLER 808

Query: 187 KSTIQDLLLN 196
           K  I+++LL+
Sbjct: 809 KKQIKNILLD 818


>gi|224145833|ref|XP_002325780.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222862655|gb|EEF00162.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 495

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
           +          +    ++ +N+    ++        +   G+NL Y  N ++     W+ 
Sbjct: 166 KDWLDGRTESSERQRLVERFNDPENKRVKCTLISTRAGSLGINL-YAANRVIIVDGSWNP 224

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL--- 198
                  +   + R  + G  + VF Y L+A  T++E + +R  TK  +   +++     
Sbjct: 225 T-----YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVY 279

Query: 199 ----KKETIHV 205
               ++E +H+
Sbjct: 280 RTMSREEMLHL 290


>gi|62751341|ref|NP_001015697.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Xenopus
           (Silurana) tropicalis]
 gi|58618908|gb|AAH89242.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Xenopus
           (Silurana) tropicalis]
          Length = 1003

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEV--HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA 87
             +L N      + K  KE+     K   LE ++   K     +++   F   L  ++  
Sbjct: 807 LHRLCNEFTTLSQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVF 866

Query: 88  FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               +             +    I E+N +  I +      + G G+NL    NI++   
Sbjct: 867 LRHHQHRYVRLDGKTQISERIHLIDEFNTDMDIFIFLLSTKAGGLGINLTS-ANIVILHD 925

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  +        ++    R  + G  + V V  LI + TI+E +L+  + K  ++  +
Sbjct: 926 IDCNP-----YNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLRLEQDM 978


>gi|149240093|ref|XP_001525922.1| helicase SWR1 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146450045|gb|EDK44301.1| helicase SWR1 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1764

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F +              ++      +++N + KIP+      S G G+NL  G + ++F
Sbjct: 1528 QFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIF 1586

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       +++    R  + G  R V +Y  +++ TI+  ++++   K  + +++
Sbjct: 1587 YDSDWNPA-----MDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVV 1641

Query: 195  LNALK 199
            +   +
Sbjct: 1642 IQEGE 1646


>gi|146417440|ref|XP_001484689.1| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDK 96
              KI+AL   + K     +    IV   F S L  ++    +                +
Sbjct: 674 SSTKIEALVEELYKLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQGSMSPQQR 733

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D           + +      + G  LNL    + +     WW+     Q ++R+     
Sbjct: 734 DNTIRHFMENTGVEVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV----- 787

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G KR + +     +++I+  +++    K+ + +  +N
Sbjct: 788 HRIGQKRPIRITRFCIEDSIELKIIELQEKKANMINATIN 827


>gi|68485880|ref|XP_713128.1| hypothetical protein CaO19.1871 [Candida albicans SC5314]
 gi|74679737|sp|Q59U81|SWR1_CANAL RecName: Full=Helicase SWR1
 gi|46434607|gb|EAK94011.1| hypothetical protein CaO19.1871 [Candida albicans SC5314]
          Length = 1641

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 19/170 (11%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQG 91
              +K   +    K++ L  ++++  +     ++       L            +     G
Sbjct: 1355 FPDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDG 1414

Query: 92   RTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             T  +D   +  +   + KIP+      S G G+NL  G + ++F+   W+       ++
Sbjct: 1415 ATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIFYDSDWNPA-----MD 1468

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +    R  + G  R V +Y  +++ TI+  ++++   K  + ++++   +
Sbjct: 1469 KQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGE 1518


>gi|241951878|ref|XP_002418661.1| helicase, putative [Candida dubliniensis CD36]
 gi|223642000|emb|CAX43964.1| helicase, putative [Candida dubliniensis CD36]
          Length = 1636

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F +              ++      +++N + KIP+      S G G+NL  G + ++F
Sbjct: 1395 QFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIF 1453

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       +++    R  + G  R V +Y  +++ TI+  ++++   K  + +++
Sbjct: 1454 YDSDWNPA-----MDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVV 1508

Query: 195  LNALK 199
            +   +
Sbjct: 1509 IQEGE 1513


>gi|193848542|gb|ACF22729.1| putative SWI/SNF related protein [Brachypodium distachyon]
          Length = 578

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 30/200 (15%)

Query: 30  VKCLQLANGAVYYD--EEKHWKEVHDEKIKALEVIIEKANAA--------PIIVAYHFNS 79
           ++  +  N    +   E        D  I++   ++               +++      
Sbjct: 1   MQLRKCCNHPYLFKGAEPGPPYTTGDHLIESAGKMVLLDKLLPKLKARSSRVLIFSQMTR 60

Query: 80  DLARLQKAFPQGRTLDKD----------PCTIQEWNEGKI--PLLFAHPASCGHGLNLQY 127
            L  L+                         I+ +N+ +    +      + G G+NL  
Sbjct: 61  LLDILEDYLMYKGYQYCRIDGSTGGDDCDAFIEAFNKPESEKFIFLLSTRAGGLGINLTT 120

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +I++ +   W+ +     ++     R  + G K+ V V+    ++TI+E V++R   K
Sbjct: 121 -ADIVIIYDSDWNPQ-----VDLQAQDRAHRIGQKKEVQVFRFCTEDTIEEKVIERAYKK 174

Query: 188 STIQDLLLNAL--KKETIHV 205
             +  L++     K E + +
Sbjct: 175 LVLDALVIQQAINKDELLQM 194


>gi|218680317|ref|ZP_03528214.1| non-specific serine/threonine protein kinase [Rhizobium etli CIAT
           894]
          Length = 297

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEW-NEGKIPL 111
           +     A  +V   +      +            +   G   +K P  ++ + N+    +
Sbjct: 8   LFADPEAKAVVFSQWTRTHEIVIRRLKARGIGYVSLHGGVPSEKRPELVERFRNDPDCRV 67

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   GLNLQ   + LV   L W+    +Q I RI      + G  R V V   +
Sbjct: 68  FL-STEAGSAGLNLQN-ASTLVNMDLPWNPAILEQRIARI-----HRIGQARPVQVINFV 120

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++ TI+E +L  L  K ++   +L+ 
Sbjct: 121 SKGTIEEGMLSVLAFKRSLSAGILDG 146


>gi|149408367|ref|YP_001294470.1| hypothetical protein ORF053 [Pseudomonas phage F8]
 gi|219523924|ref|YP_002455985.1| helicase [Pseudomonas phage PB1]
 gi|190333520|gb|ACE73775.1| helicase [Pseudomonas phage PB1]
          Length = 519

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 85/215 (39%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  L+ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KIYQRVEEDYHFVLKNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
                LE ++E+     II+      ++ ++             +       +    I +
Sbjct: 360 VFTDLLEGLLEEDPERSIIIWAMRIHEIGQIAAYLEAQGISFGAYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q  +R       + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLTA-ADVAIYYTTDEDNELRMQSEDR-----NHRIGTIN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|270013006|gb|EFA09454.1| hypothetical protein TcasGA2_TC010670 [Tribolium castaneum]
          Length = 1618

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI +      +   G+NL  G N +V     W+   
Sbjct: 968  YYRLDGSTSALEREKLINEFNSNPKIHVFLVSTRAGSLGINL-IGANRVVVLDASWNP-- 1024

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G ++  FVY L+  N +++ +  R   K  + D +++    +
Sbjct: 1025 ---CHDTQAVCRVYRYGQRKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRVVDECNPD 1079


>gi|284925122|ref|NP_001165424.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily a, member 4 [Xenopus laevis]
 gi|59805006|gb|AAX08100.1| Brg1 [Xenopus laevis]
          Length = 1600

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 74/231 (32%), Gaps = 42/231 (18%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  +++N    + + +     H    
Sbjct: 992  LYRHMQGKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKISNHPYMFQQIEESFSEHLGFT 1051

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     + +  ++  F          
Sbjct: 1052 GGIVQGQDVYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRGFKYLRL 1111

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  D     ++ +NE      +      + G GLNLQ   + +V F   W+  +   
Sbjct: 1112 DGTTKADDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVVIFDSDWNPHQ--- 1167

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 1168 --DLQAQDRAHRIGPQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 1216


>gi|326482383|gb|EGE06393.1| hypothetical protein TEQG_05396 [Trichophyton equinum CBS 127.97]
          Length = 1130

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  +++    N   I+V   F                         +
Sbjct: 936  KNKEWMNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKTS 995

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 996  VEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1049

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1050 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1091


>gi|209878917|ref|XP_002140899.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
 gi|209556505|gb|EEA06550.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
            muris RN66]
          Length = 1321

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RT 93
            E        +  +  +  +I     A  I+   F + L  +     +            T
Sbjct: 1144 EGFESSTKINALLDEINQMILSDPDAKGIIFSQFTNMLDLVMYKLKKSNIDCALLAGSMT 1203

Query: 94   LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +    +  +N+   + LL     + G GLNLQ   N +     WW+       +E   
Sbjct: 1204 MIQRNSILYSFNKFPDLKLLLISLKAGGEGLNLQ-VANYVFLLDPWWNPA-----VELQA 1257

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              R  + G  + V     I ++TI+E ++Q    K  + D  + A  +
Sbjct: 1258 FQRAHRIGQTKPVTAIRFIIKDTIEERMIQLQEKKQLVFDGTVGASNQ 1305


>gi|326924270|ref|XP_003208353.1| PREDICTED: DNA excision repair protein ERCC-6-like [Meleagris
           gallopavo]
          Length = 1273

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 59/246 (23%), Gaps = 56/246 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------ 43
           K Y  F       ++       +  ++     +L +                        
Sbjct: 364 KIYRNFL--CLDHVKELLTTTRSPLAELTVLKKLCDHPRLLSARACTQLDLDGQEYLEQD 421

Query: 44  ------------------EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---- 81
                             +E   +E          +   +      +V       L    
Sbjct: 422 HGSEAAVLSGANKIDHLSDESLIQESGKMLFLLGLLERLREEGHRTLVFSQSRKMLDIIE 481

Query: 82  -----ARLQKAFPQGRTLD--KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
                 R +     G      +    I  +       +        G G+ L    N +V
Sbjct: 482 RVLSSRRFKIMRIDGTVTHLTEREKRINAFQSNKDYSVFLLTTQVGGVGITLTA-ANRVV 540

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+        +   V R  + G K  V +Y LI   T++E + +R   K ++   
Sbjct: 541 IFDPSWNPAT-----DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLIRQ 595

Query: 194 LLNALK 199
                K
Sbjct: 596 TTGDKK 601


>gi|195430908|ref|XP_002063490.1| GK21938 [Drosophila willistoni]
 gi|194159575|gb|EDW74476.1| GK21938 [Drosophila willistoni]
          Length = 1564

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 61/177 (34%), Gaps = 15/177 (8%)

Query: 34   QLANGA---VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL-----Q 85
            Q++N     +++   K    + D  +   + ++   +    + A +              
Sbjct: 884  QISNSPKMEIFFTIMKESMLLGDRILLFSQSLLTLNSIEGFLKASYVPGSHELWTRNISY 943

Query: 86   KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +  +    + E+N    + L      +   G+NL  G N ++ F   W+    
Sbjct: 944  FRLDGSTSSQERERLVNEFNSNSNVKLFLISTRAGSLGINLT-GANRVIIFDASWNP--- 999

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +   V R  + G  +  +VY ++    +++ +  R   K  + D +++    E
Sbjct: 1000 --CHDTQAVYRIYRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDECNPE 1054


>gi|222622979|gb|EEE57111.1| hypothetical protein OsJ_06974 [Oryza sativa Japonica Group]
          Length = 1028

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
            V   KI  L   +E  + + A  I+   + + L  LQ    +               +  
Sbjct: 859  VESSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLDGTLNLQQRE 918

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+E+  +  I +L     + G G+NL    +       WW+    +Q I RI      
Sbjct: 919  KVIKEFSEDKSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAIMRI-----H 972

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  ++V +   I + T++E +      K  +    L
Sbjct: 973  RIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGAL 1010



 Score = 38.2 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/193 (7%), Positives = 43/193 (22%), Gaps = 28/193 (14%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    +     ++  Q  +           +E  D    
Sbjct: 696 YDALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVLSRGDTQEFADLNKL 755

Query: 58  ALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           A   +       N    + +  +  ++ +  +       +      ++ + +        
Sbjct: 756 AKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKGEGECPI-----CLEAFED-----AVL 805

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            P +                 S W         + R  +++Q              + +N
Sbjct: 806 TPCAHRLCRE--------CLLSSWRSASAGLCPVCRKSMSKQDLITAPTDNRFQIDVEKN 857

Query: 175 TID-ELVLQRLRT 186
            ++   +   L+ 
Sbjct: 858 WVESSKISFLLQE 870


>gi|218190874|gb|EEC73301.1| hypothetical protein OsI_07472 [Oryza sativa Indica Group]
          Length = 1031

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
            V   KI  L   +E  + + A  I+   + + L  LQ    +               +  
Sbjct: 862  VESSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLDGTLNLQQRE 921

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+E+  +  I +L     + G G+NL    +       WW+    +Q I RI      
Sbjct: 922  KVIKEFSEDKSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAIMRI-----H 975

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + G  ++V +   I + T++E +      K  +    L
Sbjct: 976  RIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGAL 1013



 Score = 38.2 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/193 (7%), Positives = 43/193 (22%), Gaps = 28/193 (14%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    +     ++  Q  +           +E  D    
Sbjct: 699 YDALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVLSRGDTQEFADLNKL 758

Query: 58  ALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           A   +       N    + +  +  ++ +  +       +      ++ + +        
Sbjct: 759 AKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKGEGECPI-----CLEAFED-----AVL 808

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            P +                 S W         + R  +++Q              + +N
Sbjct: 809 TPCAHRLCRE--------CLLSSWRSASAGLCPVCRKSMSKQDLITAPTDNRFQIDVEKN 860

Query: 175 TID-ELVLQRLRT 186
            ++   +   L+ 
Sbjct: 861 WVESSKISFLLQE 873


>gi|255552483|ref|XP_002517285.1| helicase, putative [Ricinus communis]
 gi|223543548|gb|EEF45078.1| helicase, putative [Ricinus communis]
          Length = 363

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 23/177 (12%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQG- 91
           +      E    K     K+ AL  ++     K   A  ++   F   L  L++      
Sbjct: 173 SSHTDNTEISSSKRNTSSKVSALLNLLMAARDKNPTAKSVIFSQFQKMLVLLEEPLKAAG 232

Query: 92  ---------RTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        K    I+E+         +L A   +   G+NL    + +     WW
Sbjct: 233 FKILRLDGTMNAKKKAQVIKEFGIPGPNGPTVLLASLKASCAGINL-AAASKVYLLEPWW 291

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +       +E   + R  + G K  V V  LI +N+I+E +L+    K  +      
Sbjct: 292 NPA-----VEEQAMDRVHRIGQKEDVTVVRLITRNSIEERILEMQERKKKLAKEAFG 343


>gi|46128325|ref|XP_388716.1| hypothetical protein FG08540.1 [Gibberella zeae PH-1]
 gi|116090837|gb|ABJ56000.1| RING-13 protein [Gibberella zeae]
          Length = 1133

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 52   HDEKIKALEVIIEKANAA--PIIVAYHFN-----------SDLARLQKAFPQGRTLDKDP 98
               K+     ++++        I+   +             +     + +    +  +  
Sbjct: 958  PSSKVTECLNLVKEIEGTGEKTIIFSQWTLLLDLLQVAMKRENMAKPERYDGSMSATQRN 1017

Query: 99   CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 + +G  + ++     +   GLNL    + ++    +W+       IE   V R  
Sbjct: 1018 IAAHNFRDGKDVRVMLVSLKAGNAGLNLTA-ASRVIIMDPFWNP-----YIEMQAVDRAY 1071

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V VY ++   T+++ ++     K  + +  L+ 
Sbjct: 1072 RIGQQKPVKVYRILTNETVEDRIVDLQNKKKEMVEAALDE 1111



 Score = 41.7 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 2/68 (2%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 4   YHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y + ++         ++ +++     +     ++  Q         +         ++ +
Sbjct: 698 YKQLEKNAQVLVNKYIREKSVSKNYSSILVLLLRLRQACCHPHLNLDVDDAPSTDSDEKR 757

Query: 58  ALEVIIEK 65
                + +
Sbjct: 758 KTVEDLNE 765


>gi|281209483|gb|EFA83651.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 934

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVI---IEKANAAPIIVAYHFNSDLA----------RLQ 85
                  K  +  +  K++ ++ +   I       ++V  ++   L+             
Sbjct: 629 FPKEFNTKVSQPQYSGKLQFIDTLMQQIRNKTKDRVVVISNYTQTLSVLARLCNERGYPF 688

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    DK    + ++N+   P  +      + G GLNL  G N L+     W+   
Sbjct: 689 FQLDGSTPSDKRQVLVDKFNDPSSPQFVFLLSSKAGGIGLNL-IGANHLILVDPDWNPAN 747

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +   + R  + G K+ V +Y  ++  TI+E + QR  TK  +   ++  
Sbjct: 748 -----DAQAMARVWREGQKKVVSIYRTLSTGTIEEKIYQRQITKMALSVSVVEG 796


>gi|157116391|ref|XP_001658454.1| helicase [Aedes aegypti]
 gi|108876505|gb|EAT40730.1| helicase [Aedes aegypti]
          Length = 814

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 62/171 (36%), Gaps = 19/171 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
           +Y         V   K + L+ ++ K       +++   F   L  ++K           
Sbjct: 606 LYDLRIPDQLIVASGKFRQLDELLPKLKREGHRVLIFSQFVMMLDIMEKYLDIRHYGFLR 665

Query: 96  --------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +    I  +N +  I +      + G G+NL    + ++   + ++      
Sbjct: 666 LDGQTAVTERQEMIDLYNQDPNIFIFLLSTKAGGLGINLTA-ADTVIIHDIDFNP----- 719

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++    R  + G  + V +Y L+++ TI+E +L   + K  ++  + + 
Sbjct: 720 YNDKQAEDRSHRMGQTKPVTIYKLVSEGTIEEGMLMIAQEKLQLEKDVTDE 770


>gi|304438573|ref|ZP_07398512.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368411|gb|EFM22097.1| Snf2 family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 819

 Score = 82.5 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 17/184 (9%)

Query: 25  SASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
                +   +  +         +H       K    ++           +IV   F   L
Sbjct: 622 ILQAFLYLREACSEPQLLPLSLRHSTSCESCKYDLFKLYTPNIIKEHKKLIVFCQFPKIL 681

Query: 82  ARLQKAFPQGR--------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            +L++                +     I  + + K  + F    + G GLNL      ++
Sbjct: 682 KKLKRWCDSNHWSTFYIDGNTNNRERIISLFEQSKEGIFFISLKAGGVGLNLTS-AQFVI 740

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +  WW+        ER    R  + G  + VF+Y+ I  +TI+E +++    K  I   
Sbjct: 741 IYEPWWNPSA-----ERQASDRIYRIGQDKPVFIYHFIVNDTIEEKIIELQDKKKKIYSD 795

Query: 194 LLNA 197
            + A
Sbjct: 796 FIAA 799


>gi|328867363|gb|EGG15746.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1933

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 25/214 (11%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALE 60
            QY K   E+       ++ +  +A K     +L    G    D++++       K K   
Sbjct: 1644 QYQKIVDEMVQKRLPIDVHSIENAPKLTSLRELLWECGIGKDDDKENGLVK---KEKDSL 1700

Query: 61   VIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWN-E 106
              +E +     ++     + L                      G    K    +  +N +
Sbjct: 1701 ENLEISTQHRCLIFAQTKAMLDCVESDLLKKILPSVTYLRMDGGTEQMKRQTIVNRFNAD 1760

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I LL       G GLNL  G + ++F    W+      M +   + R  + G K+ V 
Sbjct: 1761 PTIDLLLLTTTVGGLGLNLT-GADTVIFLEHDWNP-----MKDLQAMDRAHRIGQKKVVN 1814

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            VY LI Q T++E ++   + K  I + ++N   +
Sbjct: 1815 VYRLITQGTLEEKIMGLQKFKLNIANTIVNQENQ 1848


>gi|156358635|ref|XP_001624622.1| predicted protein [Nematostella vectensis]
 gi|156211413|gb|EDO32522.1| predicted protein [Nematostella vectensis]
          Length = 659

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 32/210 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           M+ Y    +    +  G+ +  F    +++K                   +  + +  L 
Sbjct: 386 MRNY----KPFIAEQGGKMVLLFEIIEESLKL-------------GEKILIFSQSLSTLS 428

Query: 61  VIIEKANAAPIIVAYHFNSD------LARLQKAFPQGRTLDKDPCTIQEWNEGKIP---L 111
           +I E  N+  +       SD        +         +  +    I  +N+       L
Sbjct: 429 IIEEFLNSRVVPFFPGRQSDPSTKWARNKSYFRLDGSTSAQERERLINAFNDNSSNEVLL 488

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G+NL  G + +V F   W+        +   V R  + G  R   +Y LI
Sbjct: 489 FMLSTRAGCLGVNL-VGASRVVVFDSSWNP-----CHDVQAVCRVYRYGQVRPCHIYRLI 542

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           A  T+++ +  R  +K  + + +++ L  E
Sbjct: 543 ATGTMEKKIYDRQVSKQGVANRVVDELNPE 572


>gi|316975430|gb|EFV58874.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1023

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL--------- 81
             +L       D   +       K+ AL+ I+ +       +++   F   L         
Sbjct: 836  HKLCCQHKLSDSAIN----DSGKLIALDGILAEAKQQGNKVLLFSQFVIVLDVLEEFLNL 891

Query: 82   -ARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         + +    I  +N    I +      + G G+NL    N++V + + +
Sbjct: 892  KQIRYLRLDGQTPVVERQQLIDMFNSSEDIFIFLLSTRAGGLGINLTS-ANVIVLYDIDY 950

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +        +R    R  + G K+ V V  LI+++T+DE +L     K  ++  +
Sbjct: 951  NP-----HNDRQAEDRCHRVGQKKDVHVIKLISKDTVDESMLACANKKLELERQI 1000


>gi|255561985|ref|XP_002522001.1| conserved hypothetical protein [Ricinus communis]
 gi|223538805|gb|EEF40405.1| conserved hypothetical protein [Ricinus communis]
          Length = 1447

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 96   KDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +    ++++N+    ++        +   G+NL    N +V     W+        +   
Sbjct: 1132 ERQRLVEKFNDPENKRVKCTLISTRAGSLGINLHA-ANRVVIVDGSWNPT-----YDLQA 1185

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + R  + G  + VF Y L+A  T++E + +R  TK  +   +++         ++E +H+
Sbjct: 1186 IFRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISREEMLHL 1245


>gi|164426264|ref|XP_960829.2| hypothetical protein NCU10337 [Neurospora crassa OR74A]
 gi|157071265|gb|EAA31593.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1404

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
            ++  +       Y +    + +              K+  LEV++ K       +++  
Sbjct: 795 LMQLRKCLCHPFVYSQSIEDRNLSPEVTKRNLIEASSKLLLLEVMLPKLRERGHRVLIFS 854

Query: 76  HFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIPLL--FAHPASCGHGL 123
            F   L  L+          +              I  +N     L        + G G+
Sbjct: 855 QFLDQLTILEDFLAGMDLPYQRLDGSQSSMEKQKRIDAFNAPDSQLFCMLLSTRAGGVGI 914

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++     W+  +     +   ++R  + G ++ V  + L+  ++ +E +LQ 
Sbjct: 915 NL-ATADTVIILDPDWNPHQ-----DIQALSRAHRIGQQKKVLCFQLMTVDSAEEKILQI 968

Query: 184 LRTKSTIQDLLLNAL 198
            R K  +  LL+  +
Sbjct: 969 GRKKMALDHLLIETM 983


>gi|330935743|ref|XP_003305110.1| hypothetical protein PTT_17857 [Pyrenophora teres f. teres 0-1]
 gi|311318056|gb|EFQ86823.1| hypothetical protein PTT_17857 [Pyrenophora teres f. teres 0-1]
          Length = 2332

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +     +    + D +      +I       + +   F +  
Sbjct: 1354 RQSIAFPDKRLLQYDCGKLQ----RLATLLRDLQAGGHRALIFTQMTKVLDILEQFLNIH 1409

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1410 GYRYLRLDGSTKIEQRQILTDRFNTDPRILCFILSSRSGGLGINLT-GADSVIFYDLDWN 1468

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1469 PA-----MDKQCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1519


>gi|189235501|ref|XP_969437.2| PREDICTED: similar to lodestar CG2684-PA [Tribolium castaneum]
          Length = 1103

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 20/199 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIV 73
           + E   A N A++ V   + + G +         E    KI+AL  +++         IV
Sbjct: 653 EEEPRVAANLANEGVGLKEASKGYLNPTNPVFMTERPSSKIRALINLLKNKISGEDKAIV 712

Query: 74  AYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGH 121
              + S L  +                   + K    +  +N+      +L     + G 
Sbjct: 713 VSQWTSLLHLVAIHLENEGIPYASLDGSVVVQKRMPIVDNFNDPNSATKVLLLSLTAGGV 772

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N L    L W+ +      E     R  + G K+ ++VY  +A  TI+E + 
Sbjct: 773 GLNL-VGANHLFLLDLHWNPQL-----ENQAQDRIYRMGQKKDIYVYKFMALETIEERIK 826

Query: 182 QRLRTKSTIQDLLLNALKK 200
                K  I + +L   K+
Sbjct: 827 ALQERKLEIANAMLTGSKQ 845



 Score = 42.0 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 5/48 (10%), Positives = 15/48 (31%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           +Y K + +L    + + +         ++  Q+        +     E
Sbjct: 578 EYFKMRNKLLKLNRVKEVSQHEILVLLLRLRQICCHPSLIKQMLQGDE 625


>gi|19114529|ref|NP_593617.1| fun thirty related protein Fft3 [Schizosaccharomyces pombe 972h-]
 gi|46397090|sp|O42861|YFC1_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C25A8.01c
 gi|2864632|emb|CAA16951.1| fun thirty related protein Fft3 [Schizosaccharomyces pombe]
          Length = 922

 Score = 82.5 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 32  CLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---- 83
              L      +   + K    +   K++ L+ ++     N   +++   F   L      
Sbjct: 737 LHNLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLV 796

Query: 84  -------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                    +     +   +     Q + +  I +      + G G+NL    N+++ + 
Sbjct: 797 MKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINL-ACANMVILYD 855

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + ++  +     +     R  + G K+ V VY  + ++TI+E + +    K  +   L
Sbjct: 856 VSFNPFD-----DLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALDATL 908


>gi|307204540|gb|EFN83220.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Harpegnathos saltator]
          Length = 847

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+K L+ ++   K +   I++   F   L  L++                 + +    I
Sbjct: 649 GKLKHLDELLPRLKKDGHRILIFSQFTMVLDILEEYLTIRGQTFIRLDGSTPVTERQSLI 708

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+     I +      + G G+NL    + ++   + ++        ++    R  + G
Sbjct: 709 NEYTQNSSIFIFLLSTRAGGLGINLTA-ADTVIIHDIDFNP-----YNDKQAEDRCHRVG 762

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            K+ V +  L+++ TI+E + +  + K  ++  +    + E   
Sbjct: 763 QKKPVTIIRLLSKGTIEESMYEIAQEKLHLEQQITGNEENEGTD 806


>gi|158298992|ref|XP_319118.4| AGAP009980-PA [Anopheles gambiae str. PEST]
 gi|157014154|gb|EAA13923.4| AGAP009980-PA [Anopheles gambiae str. PEST]
          Length = 881

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 63/170 (37%), Gaps = 19/170 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ------- 90
           +Y  +          K + L+ ++   K     +++   F   L  +++           
Sbjct: 670 LYDLQLPEKLITSSGKFRQLDELLPKMKEEGHRVLIFSQFTMMLDIMERYLKIRKHGFLR 729

Query: 91  ---GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 + +    I ++  +  + +      + G G+NL    + ++   + ++      
Sbjct: 730 LDGSTAVTERQELIDQYTQDPDLFIFLLSTKAGGLGINLTA-ADTVIIHDIDFNP----- 783

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             ++    R  + G K+ V +Y LI++ TI+E +L   + K  ++  +  
Sbjct: 784 YNDKQAEDRAHRMGQKKPVTIYKLISEGTIEEGMLMIAQQKLQLEKDVTE 833


>gi|254568488|ref|XP_002491354.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|238031151|emb|CAY69074.1| RING finger protein involved in proteolytic control of sumoylated
            substrates [Pichia pastoris GS115]
 gi|328352132|emb|CCA38531.1| Putative DNA helicase ino80 [Pichia pastoris CBS 7435]
          Length = 1140

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 25/207 (12%)

Query: 3    QYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y K   +     D+        +      + +                   D+ ++ ++
Sbjct: 923  VYDKIVNQHISVMDIVKSESPVLSKIEMIQQLI------RENKGVFESSAKIDKAVEMIQ 976

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKI 109
             ++       IIV   F +    ++           +        ++D    + +   + 
Sbjct: 977  ELLRDNPGEKIIVFSQFTTLFDVIEVILKENNIKFIRYDGSMSLSNRDAAIQEFYESTEK 1036

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++     +   GL L    + ++    +W+       +E   + R  + G  R VFVY 
Sbjct: 1037 NVMLLSLKAGNVGLTLT-CASRVIIMDPFWNP-----YVEDQAMDRAHRIGQLREVFVYR 1090

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            ++ +NT+++ +L    TK  I +  L+
Sbjct: 1091 MLIKNTVEDRILTIQNTKREIVENALD 1117


>gi|115401476|ref|XP_001216326.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190267|gb|EAU31967.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 966

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 68/198 (34%), Gaps = 31/198 (15%)

Query: 29  TVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN- 78
            ++  +                +          K + L  ++ +       +I+   F  
Sbjct: 465 LMELRKCCIHPYLLDGVMPWPYQVGIDLITQSGKFQVLSKLVRRFVSEQKKVIIFSGFEG 524

Query: 79  ---------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
                           D  R  +   Q  +  ++  T    N+ +  +      + G GL
Sbjct: 525 ALDLCEDMLSLLQTSFDPFRYVRLDGQTPSAVRNLSTYLFRNDERYLVFLISIRAGGEGL 584

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++F    W+ ++      +   +R  + G  + V ++ + ++ T++E + +R
Sbjct: 585 NLT-CSSTIIFLDEDWNPQQM-----KQACSRVHRIGQTKPVEIFRIQSRGTVEEQMARR 638

Query: 184 LRTKSTIQDLLLNALKKE 201
           L  K+ + D +   ++ +
Sbjct: 639 LEKKAYMADRVTERVRSQ 656


>gi|258564558|ref|XP_002583024.1| DNA repair protein RAD16 [Uncinocarpus reesii 1704]
 gi|237908531|gb|EEP82932.1| DNA repair protein RAD16 [Uncinocarpus reesii 1704]
          Length = 896

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++    +            T  +   +I  + N   +
Sbjct: 734 KLRSKKQTHKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMTPVQRQKSIDYFMNNVDV 793

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 794 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITK 847

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 848 LCIEDSVESRMVLLQEKKANMINGTINKDQSEALE 882


>gi|255933007|ref|XP_002557974.1| Pc12g11570 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582593|emb|CAP80784.1| Pc12g11570 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1229

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +      I +L A   + G GLNL    + +      ++     Q I+RI    
Sbjct: 1113 RTRALEEFAKNDNIKVLLATIGAGGVGLNLTS-ASRVFIMEPQYNPAAVAQAIDRI---- 1167

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G  R V  +  I + +I+E +L   R K  + D  LN +K++
Sbjct: 1168 -HRLGQTRPVQTFQFIMKGSIEEKILDLARKKQEMADTSLNRVKQD 1212


>gi|189197581|ref|XP_001935128.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981076|gb|EDU47702.1| helicase swr1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1676

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
              + A    + LQ   G +     +    + D +      +I       + +   F +  
Sbjct: 1353 RQSIAFPDKRLLQYDCGKLQ----RLATLLRDLQAGGHRALIFTQMTKVLDILEQFLNIH 1408

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        +++       +N + +I        S G G+NL  G + ++F+ L W+
Sbjct: 1409 GYRYLRLDGSTKIEQRQILTDRFNTDPRILCFILSSRSGGLGINLT-GADSVIFYDLDWN 1467

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+++ 
Sbjct: 1468 PA-----MDKQCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDVIIQ 1518


>gi|308807621|ref|XP_003081121.1| DNA-dependent ATPase, stimulates strand exchange by modifying the
           topology of double-stranded DNA; i (ISS) [Ostreococcus
           tauri]
 gi|116059583|emb|CAL55290.1| DNA-dependent ATPase, stimulates strand exchange by modifying the
           topology of double-stranded DNA; i (ISS) [Ostreococcus
           tauri]
          Length = 730

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 97  DPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++++N G    ++     + G GLNL  G N L+   + W+        +R  + R
Sbjct: 532 RTSIVKDFNNGDGGQVMLLSVVAGGAGLNL-VGANRLILMDVSWNPAH-----DRQAMGR 585

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G ++ V +Y LI   T+++ V +R   K  +++ +
Sbjct: 586 VWRDGQRKPVTIYRLITSGTVEQKVFERQLGKEVLKNTV 624


>gi|323449633|gb|EGB05519.1| hypothetical protein AURANDRAFT_30762 [Aureococcus anophagefferens]
          Length = 603

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 22/144 (15%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD--------------KDPCTIQEWNEGKIPLLF 113
            + +++   F   L  L++                       +    ++ +N  +  +  
Sbjct: 466 GSRVLLFSQFTLTLDVLEEYCAAHHGDRGVGYLRLDGATGRIQREMDMRSFNASESKIFL 525

Query: 114 --AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NL    + +V +   W+ +     ++   + R  + G +  V VY LI
Sbjct: 526 YLISTRAGGQGINL-ATADTVVLYDTCWNPQ-----VDLQAMDRAHRIGQRGQVTVYRLI 579

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
           A++T++E V  R   K  +  L++
Sbjct: 580 ARDTVEEKVHARAHQKLLLDALVM 603


>gi|261196956|ref|XP_002624881.1| DNA excision repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239596126|gb|EEQ78707.1| DNA excision repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 1026

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     K+    +     N   ++V  H    L  LQ  F    
Sbjct: 595 RQLYATRDSILNYANHEFCGKWKVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 654

Query: 91  --------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + D     +  +N + +  +      + G GLN+    N +V     W+ 
Sbjct: 655 YNVSYLDGAMSYDDRTKAVDSFNADPREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 713

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 714 A-----YDLQAQDRAYRIGQSRDVEVFRLVSAGTIEEIVYARQIYKQQQAN 759


>gi|302307173|ref|NP_983750.2| ADL345Cp [Ashbya gossypii ATCC 10895]
 gi|299788872|gb|AAS51574.2| ADL345Cp [Ashbya gossypii ATCC 10895]
          Length = 746

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 21/169 (12%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI+AL   +            IV   F S L  ++    +            T  + 
Sbjct: 573 SSTKIEALLEELYNLRSSTRTIKSIVFSQFTSMLDLVEWRLKRAGFQTAKLQGSMTPTQR 632

Query: 98  PCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             TI  + +     +      + G  LNL    + +     WW+     Q  +R+     
Sbjct: 633 AETINYFMDNVHCEVFLVSLKAGGVALNL-CEASQVFILDPWWNPSVEWQSGDRV----- 686

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G  R V +     +++I+  +++    K+ +    L   +     +
Sbjct: 687 HRIGQHRPVKITRFCIEDSIESRIIELQEKKANMIHATLGQDEGAVNRL 735


>gi|331224559|ref|XP_003324951.1| RAD5 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309303941|gb|EFP80532.1| RAD5 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 789

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 23/170 (13%)

Query: 52  HDEKIKALEVIIEKAN------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
              K+  L  ++++            IV   F S L  ++    +               
Sbjct: 553 SSTKVSRLLELLDEIKAEDTKTPKKTIVFSQFTSFLNLIEPFIKKAGYGYTRYDGAKSPD 612

Query: 98  ---PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  +  ++ K  +L         GLNL    + ++    WW+       IE     
Sbjct: 613 EKTRALEKIKSDPKCTVLLISLKCGSVGLNLT-CCSRVILMDPWWNPS-----IETQAFD 666

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           R  + G +  V  Y +   +TI++ +LQ    K ++ +  L     + ++
Sbjct: 667 RAHRFGQRDDVKCYKITIADTIEDRILQLQEDKQSLANQALGTEAAKKMN 716


>gi|218195896|gb|EEC78323.1| hypothetical protein OsI_18057 [Oryza sativa Indica Group]
          Length = 987

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +  +++   +    +++       L  +Q+                 + +    
Sbjct: 636 SCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRIDGTTKISERERI 695

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++ EG   P+        G GL L      ++     W+     Q ++R       + 
Sbjct: 696 VKDFQEGPGAPIFLLTTQVGGLGLTLTKAA-RVIVVDPAWNPSTDNQSVDR-----AYRI 749

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY L+   TI+E + +    K  +        ++
Sbjct: 750 GQMKDVIVYRLMTSGTIEEKIYKLQVFKGALFRTATEHKEQ 790


>gi|209875245|ref|XP_002139065.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209554671|gb|EEA04716.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1085

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + +     +  N+  I L        G GLN+  G N ++ +  WW+        +  
Sbjct: 723 PVVSRFSLVERFNNDSSIFLFILTSRVGGVGLNI-MGANRIILYDPWWNPMT-----DAQ 776

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G  + V VY LI ++T++E + QR   K  I + +L   K
Sbjct: 777 AKERCWRIGQDKEVIVYRLITKDTVEEKIYQRQLFKQFIANQILQDAK 824


>gi|116202151|ref|XP_001226887.1| hypothetical protein CHGG_08960 [Chaetomium globosum CBS 148.51]
 gi|88177478|gb|EAQ84946.1| hypothetical protein CHGG_08960 [Chaetomium globosum CBS 148.51]
          Length = 890

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 19/176 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKA---------- 87
                       +   KI+ L  I+  +A+    IV   F S L  ++            
Sbjct: 655 HSIGTGSSSNSVMTSAKIRELLSILRKEASVHKFIVFSQFTSMLDLVEPFLRAQPGLKAV 714

Query: 88  -FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      D     ++    +    +L         GLNL      +V    +W+     
Sbjct: 715 RYDGKMPNDAREAALRALRTDPHTRILLCSLKCGSLGLNLTA-ATRVVIVEPFWNP---- 769

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +E   + R  +      V VY L   +T++  +L     K  + +  L    ++
Sbjct: 770 -FVEEQAIDRVHRLTQTVDVVVYKLTVADTVEARILALQDKKRRLAEATLEGGSRK 824



 Score = 44.0 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/118 (8%), Positives = 32/118 (27%), Gaps = 14/118 (11%)

Query: 4   YHKFQ---RELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------YDEEKHWKEVHD 53
           Y K +    +    +    +   N+    ++  Q  N             E  +      
Sbjct: 402 YDKLEARADKSLEKMMKGKVNYANALVLLLRLRQACNHPRLSETKLEKDSEALNADTAPQ 461

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            K  A + +    +     + + + S  ++      +     +       + + +I +
Sbjct: 462 PKPSAADDL----DDLAECLWWQWASRRSKKSTTRARAERSQRRRTGESAFVKEEIKI 515


>gi|312214231|emb|CBX94225.1| hypothetical protein [Leptosphaeria maculans]
          Length = 938

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 61/209 (29%), Gaps = 43/209 (20%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--------------------- 63
           +        ++ N            +     ++ L  +I                     
Sbjct: 577 ALQLINVLKKVCNSPSLLKSSTDNDDTPSALLQTLLPLIPPQILNSSASSTKLRLLDSLV 636

Query: 64  ---EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN---EG 107
                     I++  ++ + L  +++                   K    + ++N   + 
Sbjct: 637 HRIHTTTDEKIVIVSNYTTTLDMIERLLTSLSYTYLRLDGSTPAAKRQPLVNKFNTSSKS 696

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                     S G G+NL  G + +V F   W+        +   + R  + G K    +
Sbjct: 697 TAFAFLLSAKSGGVGINL-IGASRIVLFECDWNPAT-----DLQAMARIHREGQKLPCKI 750

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y  + +  +DE + QR  +K  +   +++
Sbjct: 751 YRFLIKGGLDEKIYQRQVSKMGLAGAVVD 779


>gi|255956037|ref|XP_002568771.1| Pc21g17740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590482|emb|CAP96671.1| Pc21g17740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 968

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 47  HWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
                   KI+ L  I+    +A     +V   + S L  ++    Q            +
Sbjct: 789 DHPNSPSSKIETLVKILTAQGQAPGTKTVVFSQWTSFLDLIEPHLQQRGVKFARVDGKMQ 848

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++ +D       ++ +  +L A  + C  GLNL    N ++    WW        IE   
Sbjct: 849 SVKRDNSINSFSSDTQCTILLASLSVCSVGLNLVA-ANQVILCDSWWAPA-----IEDQA 902

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V R  + G KR   V+ L+ +++I+E VL     K  +         K+
Sbjct: 903 VDRVYRLGQKRETTVWRLVMEDSIEERVLAIQERKRRLMLAAFRETAKK 951


>gi|297741293|emb|CBI32424.3| unnamed protein product [Vitis vinifera]
          Length = 1112

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
                 +            +++K    +  +++      +      + G GLNL  GGN 
Sbjct: 747 FAQLCRERRYPYLRLDGTTSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNL-IGGNR 805

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV F   W+        ++    R  + G K+ V++Y  ++  TI+E V QR  +K  +Q
Sbjct: 806 LVLFDPDWNPAN-----DKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVFQRQMSKEGLQ 860

Query: 192 DLLLNALKKETI 203
             ++   +K+++
Sbjct: 861 -KVIQQEQKDSL 871


>gi|302911947|ref|XP_003050605.1| hypothetical protein NECHADRAFT_123411 [Nectria haematococca mpVI
            77-13-4]
 gi|256731542|gb|EEU44892.1| hypothetical protein NECHADRAFT_123411 [Nectria haematococca mpVI
            77-13-4]
          Length = 1066

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 22/198 (11%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            DL+   IE   +  K      + N      E        +  +  L  +     +   I+
Sbjct: 863  DLEQPEIEQDEALVKKNS---IIN--RIKMENWTSSSKIELLVHELHKLRSDNASHKSII 917

Query: 74   AYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHG 122
               F + L  ++                 T  +   +I+ + N   +        + G  
Sbjct: 918  FSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFMNNVDVECFLVSLKAGGVA 977

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    + +     WW+     Q  +R       + G  R   +  L  +++++  ++ 
Sbjct: 978  LNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRPCTITRLCIEDSVESRMVL 1031

Query: 183  RLRTKSTIQDLLLNALKK 200
                K+++    +NA  K
Sbjct: 1032 IQEKKTSMIHSTVNADDK 1049


>gi|302502694|ref|XP_003013308.1| hypothetical protein ARB_00493 [Arthroderma benhamiae CBS 112371]
 gi|291176871|gb|EFE32668.1| hypothetical protein ARB_00493 [Arthroderma benhamiae CBS 112371]
          Length = 1110

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  +++    N   I+V   F                         +
Sbjct: 916  KNKEWMNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILELVLETQKIKFFRLDGKTS 975

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 976  VEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1029

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1030 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1071


>gi|260951227|ref|XP_002619910.1| hypothetical protein CLUG_01069 [Clavispora lusitaniae ATCC 42720]
 gi|238847482|gb|EEQ36946.1| hypothetical protein CLUG_01069 [Clavispora lusitaniae ATCC 42720]
          Length = 1061

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
               K+  L  +I++       I+V   F   L  L+K                       
Sbjct: 888  DSGKVAKLLDLIKQTIMKKEKILVFSLFTQMLDILEKVLSFANISFLRLDGQTSVDTRQD 947

Query: 100  TIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  +  IP+      + G G+NL    N +V F   ++  +     ++    R  +
Sbjct: 948  IIDRFYEDEDIPVFLLSTKAGGFGINLVA-ANNVVIFDQSFNPHD-----DKQAEDRAHR 1001

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             G    V V  LI++NTIDE +L     K  +   +
Sbjct: 1002 VGQTNEVMVTKLISENTIDENILMLAENKLQLDQSI 1037


>gi|321445102|gb|EFX60594.1| hypothetical protein DAPPUDRAFT_308061 [Daphnia pulex]
          Length = 190

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGG 129
           + A HF     R          +      ++++N      P++     + G GLNL  GG
Sbjct: 34  LFAQHFRRMRIR-CHLIAGSVAIKHRTEIVEDFNGNPDGAPVILLSLGAGGVGLNL-IGG 91

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           N +    + W+ +   Q  +R+      + G  + V V+ +I Q T++E +LQ  + K  
Sbjct: 92  NHIFIADMHWNPQLEAQACDRV-----YRVGQTKDVHVHRMITQGTVEERILQLQQEKLA 146

Query: 190 IQDLLL 195
           + + +L
Sbjct: 147 MANGIL 152


>gi|327292821|ref|XP_003231108.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326466738|gb|EGD92191.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1143

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + ++  K+  L  +++    N   I+V   F                         +
Sbjct: 949  KNKEWMNSGKVDKLCELLDNYIANGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKTS 1008

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E  ++P+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1009 VEDRQSILDAFHEQVEVPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1062

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1063 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1104


>gi|302416497|ref|XP_003006080.1| DNA repair protein RAD16 [Verticillium albo-atrum VaMs.102]
 gi|261355496|gb|EEY17924.1| DNA repair protein RAD16 [Verticillium albo-atrum VaMs.102]
          Length = 983

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 22/198 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           DL+   IE   +     K   + N      EE       +  +  L  +         IV
Sbjct: 780 DLEQPEIEQDQAMV---KKSSIIN--RIKMEEWTSSSKIETLVYELHKLRSDKATHKSIV 834

Query: 74  AYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHG 122
             +F S L  ++                 T  +   +I  +    ++        + G  
Sbjct: 835 FSNFTSMLQLIEWRLRRAGVTTVMLDGSMTPAQRQASIDHFMKNPEVECFLVSMKAGGVA 894

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + +     WW+     Q  +R       + G  R   +  L  +++++  ++Q
Sbjct: 895 LNLTE-ASHVFIVDPWWNPAAEWQSADRC-----HRIGQGRPCTITRLCIEDSVESRIVQ 948

Query: 183 RLRTKSTIQDLLLNALKK 200
               K+ +    +N   K
Sbjct: 949 LQEKKTNMIHSTVNGDDK 966


>gi|256070735|ref|XP_002571698.1| helicase [Schistosoma mansoni]
 gi|238656844|emb|CAZ27928.1| helicase, putative [Schistosoma mansoni]
          Length = 1035

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPA 117
             +++       L  +Q          +                    + +  +      
Sbjct: 366 HKVLIFSQMTRMLDIIQDYLTLRGYSYERLDGSVRGEDRFQAVKSFNEDQETFVFLLSTR 425

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLNL    + ++F    ++ +     I+     R  + G K+ V +  L+ ++T++
Sbjct: 426 AGGQGLNLVS-ADTVIFVDSDFNPQ-----IDVQAAGRAHRIGQKKPVRIVRLVCRHTVE 479

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           E +L R   K  +   +LN
Sbjct: 480 EAILSRAENKLKLATRVLN 498


>gi|162312350|ref|XP_001713034.1| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|548669|sp|P36607|RAD5_SCHPO RecName: Full=DNA repair protein rad5
 gi|443973|emb|CAA52686.1| rad8 [Schizosaccharomyces pombe]
 gi|159883887|emb|CAA89964.2| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe]
          Length = 1133

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTI 101
            +  +  L  +   +    +++   F + L               +         +     
Sbjct: 966  NGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALE 1025

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               N+  + +L     + G GLNL    N +     WW      Q I+RI      + G 
Sbjct: 1026 TFRNDPDVNVLIISLKAGGVGLNLT-CANHVFIMDPWWSWSVEAQAIDRI-----HRLGQ 1079

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKET 202
            ++ VFV   I ++T++E +L+    K+ I   L ++  K++ 
Sbjct: 1080 EKPVFVTRYIVRDTVEERMLKIQERKNFITGTLGMSEGKQQV 1121



 Score = 34.3 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 6/59 (10%), Positives = 12/59 (20%), Gaps = 6/59 (10%)

Query: 2   KQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           K Y     +    +    +               ++  Q     V         E  D+
Sbjct: 777 KIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSETFDD 835


>gi|326433455|gb|EGD79025.1| helicase DNA-binding protein [Salpingoeca sp. ATCC 50818]
          Length = 1742

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     +  +    I+ +N+     +        +   G++L    + +V     W+
Sbjct: 1190 HYFRLDGSTSASERADMIEAFNDRSNLDMHAFLISTRAGSLGISLTA-ASRVVILDTSWN 1248

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                    +   V R  + G  +  F+Y L+A  T++E +  R  TK  + + +++    
Sbjct: 1249 PSH-----DAQAVCRVYRYGQDKPCFIYRLVAAGTMEETIYNRQVTKVGLANRVVDTENP 1303

Query: 201  E 201
            E
Sbjct: 1304 E 1304


>gi|209945934|gb|ACI97198.1| okra [Drosophila simulans]
 gi|209945936|gb|ACI97199.1| okra [Drosophila simulans]
 gi|209945938|gb|ACI97200.1| okra [Drosophila melanogaster]
 gi|209945940|gb|ACI97201.1| okra [Drosophila simulans]
 gi|209945944|gb|ACI97203.1| okra [Drosophila melanogaster]
 gi|209945946|gb|ACI97204.1| okra [Drosophila melanogaster]
 gi|209945948|gb|ACI97205.1| okra [Drosophila melanogaster]
 gi|209945950|gb|ACI97206.1| okra [Drosophila melanogaster]
 gi|209945952|gb|ACI97207.1| okra [Drosophila melanogaster]
 gi|209945954|gb|ACI97208.1| okra [Drosophila melanogaster]
 gi|209945956|gb|ACI97209.1| okra [Drosophila melanogaster]
 gi|209945958|gb|ACI97210.1| okra [Drosophila melanogaster]
 gi|209945962|gb|ACI97212.1| okra [Drosophila melanogaster]
 gi|209945964|gb|ACI97213.1| okra [Drosophila melanogaster]
 gi|209945966|gb|ACI97214.1| okra [Drosophila melanogaster]
 gi|209945968|gb|ACI97215.1| okra [Drosophila melanogaster]
 gi|209945970|gb|ACI97216.1| okra [Drosophila melanogaster]
 gi|209945972|gb|ACI97217.1| okra [Drosophila melanogaster]
 gi|209945974|gb|ACI97218.1| okra [Drosophila melanogaster]
 gi|209945976|gb|ACI97219.1| okra [Drosophila melanogaster]
 gi|209945978|gb|ACI97220.1| okra [Drosophila melanogaster]
 gi|209945980|gb|ACI97221.1| okra [Drosophila melanogaster]
 gi|209945982|gb|ACI97222.1| okra [Drosophila melanogaster]
 gi|209945984|gb|ACI97223.1| okra [Drosophila melanogaster]
 gi|209945986|gb|ACI97224.1| okra [Drosophila melanogaster]
 gi|209945990|gb|ACI97226.1| okra [Drosophila melanogaster]
 gi|209945992|gb|ACI97227.1| okra [Drosophila melanogaster]
 gi|209945996|gb|ACI97229.1| okra [Drosophila melanogaster]
 gi|209945998|gb|ACI97230.1| okra [Drosophila melanogaster]
 gi|209946000|gb|ACI97231.1| okra [Drosophila melanogaster]
 gi|209946002|gb|ACI97232.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 76  MSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 130

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y L+A  +I+E +LQR   K 
Sbjct: 131 QAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKK 168


>gi|148228350|ref|NP_001084942.1| transcription termination factor, RNA polymerase II [Xenopus laevis]
 gi|47122916|gb|AAH70581.1| MGC81081 protein [Xenopus laevis]
          Length = 1187

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 58/239 (24%), Gaps = 68/239 (28%)

Query: 21   EAFNSASKTVKCLQLANG------------------------------------------ 38
               +  S  ++  Q                                              
Sbjct: 936  STVHILSLLLRLRQCCGHLSLLKVVLEQLELKSEGLSLTLEEQLSALSLTECQGPDPKST 995

Query: 39   --------AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
                         + +         +  L+ I   + A   ++   + S L  +      
Sbjct: 996  VSLNGTNFPSELFDTESQSTKISSLVSELKTIRSSSEAQKSVIVSQWTSMLKIVAVHLKL 1055

Query: 88   -------FPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           +    ++++N       ++       G       GGN L    + 
Sbjct: 1056 IGLSCATIDGSVNPKQRMDMVEDFNNNPKGPQVMLVSL-CAGGVGLNLVGGNHLFLMDMH 1114

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+     Q  +RI      + G ++ V ++  +   T++E + Q    K  +   +L+ 
Sbjct: 1115 WNPALEDQACDRI-----YRVGQQKDVVIHRFVCLGTVEEKISQLQEKKKDLAKKVLSG 1168


>gi|121712768|ref|XP_001273995.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119402148|gb|EAW12569.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 953

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 20/165 (12%)

Query: 52  HDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
              KI+AL  I+           +V   + S L  ++    + R              +D
Sbjct: 780 PSSKIEALIKILTAQGQALGTKTVVFSQWTSFLNLVEPHLQRHRISFVRIDGSMSSTARD 839

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +  N+    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 840 SSTYKFSNDPGCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPT-----IEDQAVDRVY 893

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G KR   V+ L+ +NTI++ VL+   TK  +         K+ 
Sbjct: 894 RLGQKRETTVWRLVMENTIEDRVLEIQDTKRKLMLAAFRETSKKV 938


>gi|255573018|ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223533174|gb|EEF34931.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 1028

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
            V   K+  L   +E  +++ +  I+   + + L  LQ    +               +  
Sbjct: 859  VESSKVIVLLQELENLRSSGSKSILFSQWTAFLDLLQIPLSRSGISYVRLDGTLNQQQRE 918

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+++  +  I +L     + G G+NL    +       WW+    +Q + RI      
Sbjct: 919  RVIKQFSEDDSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAVMRI-----H 972

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G  + V +   I + T++E +      K  +    L   +  T  +
Sbjct: 973  RIGQTKPVMIKRFIVKGTVEERMEAVQARKQRMVSGALTDQEVRTARI 1020



 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 26/193 (13%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    +                    +     ++  Q  +           +E  D    
Sbjct: 694 YEALFKRSKVKFNQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKL 753

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           A   +    N             L    +  P    +++    +++ ++G+ P+      
Sbjct: 754 AKRFLKGGQN------------MLEGEARDVPSRAYVEEVVEELRKGDQGECPICL---- 797

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  L    + L      + W +       + R  VTRQ              I +N
Sbjct: 798 EAFEDAVLTLCAHRLCRECLLASWRNSTSGLCPVCRKIVTRQELITAPTDSRFQIDIEKN 857

Query: 175 TID-ELVLQRLRT 186
            ++   V+  L+ 
Sbjct: 858 WVESSKVIVLLQE 870


>gi|209945988|gb|ACI97225.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 76  MSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 130

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y L+A  +I+E +LQR   K 
Sbjct: 131 QAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKK 168


>gi|322699637|gb|EFY91397.1| putative DNA repair protein RAD26 [Metarhizium acridum CQMa 102]
          Length = 1075

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 17/157 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDK 96
           + +     K+    +     N   ++V  H    L  LQ                 + ++
Sbjct: 547 NPEFCGKWKVMKKLLRFWHQNGDKVLVFSHSVRLLRILQHLFTSTSYNVSYLDGSLSYEE 606

Query: 97  DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +N      +      + G GLN+    N +V     W+        +     R
Sbjct: 607 RQDVVDTFNSDPTQFVFLISTKAGGVGLNITS-ANKVVIVDPHWNPS-----YDLQAQDR 660

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V V+ LI+Q T++E+V  R   K    +
Sbjct: 661 AYRIGQTRDVEVFRLISQGTVEEIVYARQVYKQQQAN 697


>gi|170577655|ref|XP_001894090.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
 gi|158599485|gb|EDP37070.1| Type III restriction enzyme, res subunit family protein [Brugia
           malayi]
          Length = 805

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 49/212 (23%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKE-----------------------------VHDEKI 56
            +      +L N      +    K                                  K+
Sbjct: 421 LTLIDALRKLCNHPFLLYQSMVVKRQTCKVEEREFYNAFLQSFPNTFNAFSLSTTDSGKL 480

Query: 57  KALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
                ++   +     +++  +F   L  L++                   K    ++E+
Sbjct: 481 NVFVELLATFREQEEKVVIVSNFTQTLDLLEELCRTLYYTILRLDGSTEAKKRMEIVEEF 540

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           N              + G GLNL  G N ++ F   W+     Q + RI      + G +
Sbjct: 541 NSLSNKNYAFLLSAKAGGLGLNL-VGANRMILFDSDWNPAVDMQAMARIW-----RQGQE 594

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   ++ LI   T+DE +LQR   KS++  ++
Sbjct: 595 KPCHIFRLITAGTVDEKILQRQIKKSSLNTIV 626


>gi|33086941|gb|AAP92713.1| Swi2/Snf2-related protein DDM1 [Arabidopsis arenosa]
          Length = 764

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPII 72
             ++  +  N      +    +         +E I+ +                N   ++
Sbjct: 489 LMIQLRKNCNHP----DLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVL 544

Query: 73  VAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  +   F +             LD+    I+++++      +      + G
Sbjct: 545 IFSQWTKLLDIMDYYFSEKGFEVCRIDGQVKLDERRRQIKDFSDEKSSCSIFLLSTRAGG 604

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  + V VY L    +++  V
Sbjct: 605 LGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLSTAQSVETRV 658

Query: 181 LQRLRTKSTIQDLLLN 196
           L+R  +K  ++ +++ 
Sbjct: 659 LKRAYSKLKLEHVVIG 674


>gi|222618922|gb|EEE55054.1| hypothetical protein OsJ_02753 [Oryza sativa Japonica Group]
          Length = 755

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 59/221 (26%), Gaps = 54/221 (24%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE-------------------------------VHD 53
             +      ++ N           +E                               +  
Sbjct: 414 KLTPYQLLQKICNHPQNLTAVDSCEEQLALKENRTLQGIVKKLEALIAKNTTKTSNCLKS 473

Query: 54  EKIKALEVIIE------KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKD 97
            K+  +  +++      K     +++       L                     T  K 
Sbjct: 474 CKLTFILQLLKTWQEKLKEEGHKVLIFSQTRLMLDEIEEALTNKGVHFARMDGTVTASKR 533

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +      P+        G GLNL    + ++     W+     Q ++R+     
Sbjct: 534 EAIIKGFQSKDGPPIFLMTTKVGGIGLNLTN-ASRVIIADPSWNPSLDNQCVDRV----- 587

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V +Y LI   TI+E + ++  +K  I       
Sbjct: 588 YRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEE 628


>gi|194874444|ref|XP_001973399.1| GG13364 [Drosophila erecta]
 gi|190655182|gb|EDV52425.1| GG13364 [Drosophila erecta]
          Length = 880

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LL 112
           K+    +++       L  L+      +   +              I  +N       + 
Sbjct: 6   KSQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVF 65

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+        +    +R  + G    V +Y  + 
Sbjct: 66  LLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAFSRAHRIGQANKVMIYRFVT 119

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +N+++E V Q  + K  +  L++
Sbjct: 120 RNSVEERVTQVAKRKMMLTHLVV 142


>gi|322710278|gb|EFZ01853.1| putative DNA repair protein RAD26 [Metarhizium anisopliae ARSEF 23]
          Length = 1085

 Score = 82.1 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 24/170 (14%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK------- 86
           Q+ N         + +     K+    +     N   ++V  H    L  LQ        
Sbjct: 541 QITN-------LVNPEFCGKWKVMKKLLRFWHQNGDKVLVFSHSVRLLRILQHLFTSTSY 593

Query: 87  ---AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + ++    +  +N      +      + G GLN+    N +V     W+  
Sbjct: 594 NVSYLDGSLSYEERQDVVDTFNSDPAQFVFLISTKAGGVGLNITS-ANKVVIVDPHWNPS 652

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 +     R  + G  R V V+ LI+Q T++E+V  R   K    +
Sbjct: 653 -----YDLQAQDRAYRIGQTRDVEVFRLISQGTVEEIVYARQVYKQQQAN 697


>gi|7508346|pir||T28968 hypothetical protein T23H2.3 - Caenorhabditis elegans
          Length = 1026

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 28/174 (16%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              K+     ++ +       +++   + S L  ++K    G                   
Sbjct: 839  SCKMAKTLEVVREILEKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQER 898

Query: 101  IQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +N  +G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 899  VDSFNQEKGGAQVMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI-----YR 952

Query: 159  AGFKRAVFVYYL--------IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ VF++ L        I + TI++ V+     K  +   +L       ++
Sbjct: 953  MGQKKEVFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLN 1006


>gi|321457359|gb|EFX68447.1| hypothetical protein DAPPUDRAFT_260126 [Daphnia pulex]
          Length = 462

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 37/217 (17%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-----------------------YD 43
            +R     L    +         ++  Q+ +                           Y 
Sbjct: 228 MKR---LQLLDPKVTQQAILVMILRLRQVCSHPALVLTMFEDADSEFTGFDAESWSDTYF 284

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAA-----PIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
            +++     ++    L+ I+++          I++   + + L  +           +  
Sbjct: 285 HKQNPVFRREKMSTKLKYILDEVQGILSVKEKIVIVSQWTAMLDLIAIQLDNLSIAYQVI 344

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+    +L     + G GLNL  GGN L      W+ +      E     R  +
Sbjct: 345 NGNISANKRTDIILLLSLLAGGTGLNL-IGGNHLFLVDPHWNPQL-----EAQATNRIFR 398

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G  ++V V+ ++ Q++I+E VL     K    D ++
Sbjct: 399 IGQTKSVSVHRIVIQDSIEEKVLALQLNKIATADTII 435


>gi|189240994|ref|XP_968321.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
            protein [Tribolium castaneum]
          Length = 1784

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   KI +      +   G+NL  G N +V     W+   
Sbjct: 1103 YYRLDGSTSALEREKLINEFNSNPKIHVFLVSTRAGSLGINL-IGANRVVVLDASWNP-- 1159

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G ++  FVY L+  N +++ +  R   K  + D +++    +
Sbjct: 1160 ---CHDTQAVCRVYRYGQRKPCFVYRLVVDNCLEKKIYDRQINKQGMSDRVVDECNPD 1214


>gi|168060035|ref|XP_001782004.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162666495|gb|EDQ53147.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1445

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 36/224 (16%)

Query: 2   KQYHKFQRELYCDLQGEN-IEAFNSASKTVKCLQLANGAVYY---------------DEE 45
           + Y       + DL     +   +  +  V+  +  N    +               + +
Sbjct: 663 QYYKWILERNFNDLNKGVRVNQVSLLNIVVELKKCCNHPFLFESADYGYGGDANTNDNNK 722

Query: 46  KHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
                +   K+  L+ ++   K     +++       L  L           +       
Sbjct: 723 IQRIVLSSGKLAILDKLLVRLKETKHRVLIFSQMVKMLDILADYLSLRGFQFQRLDGSTR 782

Query: 98  ----PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                  ++ +N              + G G+NL    + ++ F   W+ +      +  
Sbjct: 783 ADLRHQAMEHFNAPGSEDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQ 836

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++R  + G +  V +Y  +   +++E +L+R + K     L+L
Sbjct: 837 AMSRAHRIGQRDVVNIYRFVISRSVEEDILERAKKKMASSKLIL 880


>gi|259489604|tpe|CBF90013.1| TPA: ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 648

 Score = 82.1 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 67/201 (33%), Gaps = 31/201 (15%)

Query: 29  TVKCLQLANGAVYYDE-------EKHWKEVHDEKIKALEVIIEKANA---APIIVAYHFN 78
            ++  + +       +                 K   L+ +I +        +I+   F+
Sbjct: 299 LMELRKCSIHPYLLADALPKEYNIGQHIVDASCKFIVLQKMIRQYVGLENKKVIIFSGFD 358

Query: 79  SDLARLQKAFPQGRTLD---------------KDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             L   +      +                  ++       N+ +  +      + G GL
Sbjct: 359 QTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFLLSTRAGGEGL 418

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +I++F    W+ +     + R   +R  + G  + V ++ + A+ T+++ + +R
Sbjct: 419 NLVS-SSIVIFLDDDWNPQ-----VMRQAESRVHRIGQTQPVQIFRIHAKGTVEDQMRRR 472

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           +  K+ + D ++        H
Sbjct: 473 MDKKAYLADKVMGEFGNNITH 493


>gi|66356890|ref|XP_625623.1| Swi2/Snf2 ATpase,Rad16 ortholog [Cryptosporidium parvum Iowa II]
 gi|46226722|gb|EAK87701.1| Swi2/Snf2 ATpase,Rad16 ortholog [Cryptosporidium parvum Iowa II]
          Length = 1278

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 40   VYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQK--------- 86
                + K        KI  L      ++++   +  IV   F + L  +           
Sbjct: 1093 FITRQIKTQGFESSTKIDTLLEEVNKMMQEDPESKGIVFSQFTNMLDLVSYRLKKANIGC 1152

Query: 87   -AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   ++ +    +  +N+   + ++     + G GLNLQ   N +     WW+    
Sbjct: 1153 VMLAGSMSILQRNSILYSFNKFPDLKIILISLKAGGEGLNLQ-VANYVFLLDPWWNPA-- 1209

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +E     R  + G K+ V     I ++TI+E + Q    K  + D  + A
Sbjct: 1210 ---VELQAFQRAHRIGQKKKVTALRFITKDTIEERMFQLQEKKQLVFDGTVGA 1259


>gi|301122241|ref|XP_002908847.1| DNA repair and recombination protein RAD54 [Phytophthora infestans
           T30-4]
 gi|262099609|gb|EEY57661.1| DNA repair and recombination protein RAD54 [Phytophthora infestans
           T30-4]
          Length = 1076

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 77/260 (29%), Gaps = 65/260 (25%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           K Y+ F     C        + N  S      +L N  +   +E                
Sbjct: 455 KLYNHFLSSSACR-DMMKRSSANVLSSITALKKLCNHPLLIFDEMGKTNTKLPGFSNCAQ 513

Query: 46  -------------------------KHWKEVHDEKIKALEVIIEKANA---APIIVAYHF 77
                                    +        K+  L+ ++          I++  ++
Sbjct: 514 YFTAAKSSKEGGGGDSRHRRGGFGGRTCYPEWSGKMLLLDRLMFSMRKTTTDRIVIVSNY 573

Query: 78  NSDL----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNL 125
              L                     +  K    +  +NE       L     + G GLNL
Sbjct: 574 TQTLDVVSTLCQERHLPFVRLDGTTSAKKRKKLVDTFNEPTTNSFALLLSSKAGGCGLNL 633

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             G N LV F   W+        ++    R  + G K+  +VY  +A  T++E + QR  
Sbjct: 634 -IGANRLVLFDPDWNPAT-----DKQAAARVWREGQKKMCYVYRFLATGTLEEKIFQRQL 687

Query: 186 TKSTIQDLLLNALKKETIHV 205
           +K  +Q+++    K+E   +
Sbjct: 688 SKEGLQNIV--DDKEEVNSL 705


>gi|242078375|ref|XP_002443956.1| hypothetical protein SORBIDRAFT_07g005035 [Sorghum bicolor]
 gi|241940306|gb|EES13451.1| hypothetical protein SORBIDRAFT_07g005035 [Sorghum bicolor]
          Length = 166

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPA 117
              IV   +   L  L+ +        +              ++++N + ++ ++     
Sbjct: 12  CETIVFSQWTGMLDLLENSLNTNLIQYRRLDGTMSLNLRDKAVKDFNTDPEVRVMIMSLK 71

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLN+    + ++   LWW+        E   + R  + G  R V V  L  ++T++
Sbjct: 72  AGNLGLNMVAACH-VILLDLWWNP-----YAEDQAIDRAHRIGQTRPVTVSRLTVKDTVE 125

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           + +L     K  + +      K
Sbjct: 126 DRILALQEEKRAMVNSAFGEDK 147


>gi|167534499|ref|XP_001748925.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772605|gb|EDQ86255.1| predicted protein [Monosiga brevicollis MX1]
          Length = 524

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 78/236 (33%), Gaps = 49/236 (20%)

Query: 5   HKFQRELYCDLQGENIEAFNS-ASKTVK------------CLQLANGAVYYDEEKHW--- 48
            + ++++   L  +         S   +              ++ N    + E +     
Sbjct: 101 RRLKKDVETQLPDKVEHILKVEMSALQRQLYKQMHNTIVQLRKICNHPFLFQEVEQDFST 160

Query: 49  ---------KEVHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFP---- 89
                    ++V   ++     ++ +           +++     S +  L+  FP    
Sbjct: 161 HVHQKPIAIQDVDLWRVAGKFELLTRMLPKLKATGHRVLIFCQMTSLITILEDFFPLIQI 220

Query: 90  ------QGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      D+    +Q++N  +    +      + G GLNLQ   + ++ F   W+ 
Sbjct: 221 RSMRLDGATKADERASLLQQFNAADSDYDVFVLSTRAGGLGLNLQT-ADTVIIFDSDWNP 279

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     +     R  + G +  V V+  +  ++++E +L+  R K  +   ++ A
Sbjct: 280 HQ-----DLQAQDRAHRIGQQNEVRVFRFVTVHSVEESILEAARFKLDVDQKVIQA 330


>gi|198452987|ref|XP_001359022.2| GA10321 [Drosophila pseudoobscura pseudoobscura]
 gi|198132165|gb|EAL28165.2| GA10321 [Drosophila pseudoobscura pseudoobscura]
          Length = 936

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 76/200 (38%), Gaps = 18/200 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV--- 61
            + ++E       +     +  +  +K L + N      +     ++  +K++++     
Sbjct: 724 EETKKENI----KKGKNVLSDLTGAMKLLDINNPIFNTSQPSTKLKIVIQKLQSILEGTT 779

Query: 62  ---IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHP 116
              I+     + + +   + ++       F       +    ++++N  +    +L    
Sbjct: 780 DKVIVVSQWTSFLDIIREYLNEHDWQTLDFNGKMDATEREVVLKDFNVVQNSKRILLLSL 839

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G GLNL    N L+   L W+ +      ER    R  + G ++  F+Y  + Q+T+
Sbjct: 840 TSGGVGLNL-NVANHLLLVDLHWNPQL-----ERQAQDRIYRYGQQKPTFIYRFMCQDTV 893

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           ++ +      K  I +++L 
Sbjct: 894 EQRIKALQDYKLEIANVVLQ 913


>gi|187469489|gb|AAI66868.1| Smarca5 protein [Rattus norvegicus]
          Length = 584

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR--- 92
           G  Y  +       +  K+  L+ ++ K     + +++       L  L+          
Sbjct: 1   GPPYTTDM--HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEY 58

Query: 93  -------TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    D+   +I  +NE      +      + G G+NL    ++++ +   W+ + 
Sbjct: 59  CRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQ- 116

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               ++   + R  + G  + V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 117 ----VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 168


>gi|126330702|ref|XP_001365797.1| PREDICTED: similar to helicase SMARCAD1 [Monodelphis domestica]
          Length = 1030

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 21/190 (11%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
            E++E        + C Q A   +          +   K K LE I+ +       +++  
Sbjct: 824  EDMEVMTDFELHLLCKQYA--HINDFMLDMDLILDSGKFKKLECILSELKEKGDRVVLFS 881

Query: 76   HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
             F   L  L+      +             +    I ++N +  I +      + G G+N
Sbjct: 882  QFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDQFNTDMDIFIFLLSTKAGGLGIN 941

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E +L+  
Sbjct: 942  LTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVHVIKLISQGTIEESMLKIN 995

Query: 185  RTKSTIQDLL 194
            + K  ++  +
Sbjct: 996  QQKLKLEQDM 1005


>gi|317037066|ref|XP_001398335.2| SNF2 family helicase [Aspergillus niger CBS 513.88]
          Length = 917

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKD 97
              KI+AL  I+    +A     ++   + S L  ++    +             ++ +D
Sbjct: 742 PSSKIEALIKILTAKGQAQGTKTVIFSQWTSFLDLIEPHLFRHGIGFARIDGKMSSISRD 801

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T++   +    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 802 NSTLRFSTDPSCTVLLASLSVCSVGLNLVA-ANQAILCDSWWAPA-----IEDQAVDRVY 855

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G  R   V+ L+ +++I++ VL     K  +    L A ++
Sbjct: 856 RLGQTRETTVWRLVMEDSIEDRVLAIQENKRKLM---LEAFRE 895


>gi|195122656|ref|XP_002005827.1| GI20681 [Drosophila mojavensis]
 gi|193910895|gb|EDW09762.1| GI20681 [Drosophila mojavensis]
          Length = 1457

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                        +  +    + E+N    I L      +   G+NL  G N ++ F   
Sbjct: 799 MRNSSYFRLDGSTSSQERERLVNEFNANCNIKLFLISTRAGSLGINLT-GANRVIIFDAS 857

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+        +   V R  + G  +  +VY ++    +++ +  R   K  + D +++  
Sbjct: 858 WNP-----CHDTQAVYRIYRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDEC 912

Query: 199 KKE 201
             E
Sbjct: 913 NPE 915


>gi|256070527|ref|XP_002571594.1| hypothetical protein [Schistosoma mansoni]
 gi|238656738|emb|CAZ27824.1| hypothetical conserved protein [Schistosoma mansoni]
          Length = 1266

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 96   KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    I  +N+      L      +   G+NL  G N +V F   W+            V
Sbjct: 1046 EREKLINNFNDPKNPAKLFLMSTRAGCLGVNL-IGANRVVVFDASWNPCHDC-----QAV 1099

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             R  + G  +  ++Y L++ NT+++ +  R  TK  + D +++ L 
Sbjct: 1100 CRVYRYGQVKPCYIYRLVSDNTMEKKIYDRQVTKQGMSDRVVDELN 1145


>gi|154277776|ref|XP_001539721.1| hypothetical protein HCAG_05188 [Ajellomyces capsulatus NAm1]
 gi|150413306|gb|EDN08689.1| hypothetical protein HCAG_05188 [Ajellomyces capsulatus NAm1]
          Length = 1162

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 67/212 (31%), Gaps = 39/212 (18%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
               +R+    L+     +  +  + ++ L                 V   KI+    I+ 
Sbjct: 970  KAVERKSLPQLKKNASRSAEAKREYMRYL-------------TDNWVTSAKIEKTMEILR 1016

Query: 65   KANAA---------PIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEW 104
               +            IV   F S L               +     +   ++   ++  
Sbjct: 1017 DIQSRIPEGDDKPEKTIVFSQFTSLLDLLQVPIEREGWGYCRYDGSMQPSHRNEAVLRFS 1076

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +     ++     +   GLNL    + ++    +W+    +Q I+R       + G  R 
Sbjct: 1077 DSQNHTIMLISLKAGNSGLNLVA-ASQVIILDPFWNPYLEEQAIDR-----AHRIGQMRP 1130

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V V+ ++   T+++ +L+    K  + +  L 
Sbjct: 1131 VMVHRILVHKTVEDRILELQDRKRALIEGALG 1162



 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 6/65 (9%)

Query: 3   QYHKFQRELYC----DLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y   + +        L    I     N     ++  Q        D+          KI
Sbjct: 785 LYEGLESKTQIRFNRYLDEGTIGRNYSNILVLLLRLRQACCHPHLIDDLGVETNAATAKI 844

Query: 57  KALEV 61
             +E 
Sbjct: 845 DLIEN 849


>gi|45184972|ref|NP_982690.1| AAR147Wp [Ashbya gossypii ATCC 10895]
 gi|44980593|gb|AAS50514.1| AAR147Wp [Ashbya gossypii ATCC 10895]
          Length = 1580

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 38   GAVYYDEEKHWKEVHDEK-----IKALEVIIEKANAAPIIVAYHFNSDLARLQKA----- 87
              + YD + +++ +H  K     +  ++ +++ +    +IV   F +    LQ       
Sbjct: 1383 HKLKYDYQLNFENLHQSKKVQQCLGIIKTVLDNSTDEKLIVFSQFTTFFDILQFFIKKVL 1442

Query: 88   ------FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                  +      +     I+ +  E    LL     +   GL L    N ++    +W+
Sbjct: 1443 NVSYLRYDGTMNGNVRASVIERFYREKNERLLLISMKAGNSGLTLT-CANHVILVDPFWN 1501

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   +E   + R  +   +R V+++ L+ +NTI++ +++    K T+ +  ++
Sbjct: 1502 P-----YVEEQAMDRCYRISQQREVYIHRLLLKNTIEDRIVELQNRKRTLVENAMD 1552



 Score = 35.5 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 5/43 (11%)

Query: 1    MKQYHKFQRELYCDL-----QGENIEAFNSASKTVKCLQLANG 38
            ++ Y   + E          + +   + N  +  ++  Q    
Sbjct: 1190 LEFYKSLEHETAIQARALLNERKASSSSNILTLLLRLRQACCH 1232


>gi|320168818|gb|EFW45717.1| Rad54b protein [Capsaspora owczarzaki ATCC 30864]
          Length = 988

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 57/245 (23%)

Query: 1   MKQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------ 53
           +  Y K  +          +  A           ++ N      E     E         
Sbjct: 579 LAIYRKVLQSAPLRSCFDSSSRASQHLVAITSLKKICNSPALIHELAKNAEKDSLFANTI 638

Query: 54  -----------------------------EKIKALEVIIEKANAA---PIIVAYHFNSDL 81
                                         K+ AL  I+          +++  ++   L
Sbjct: 639 DLFPDDFSPDTFDAAHSGKQRIFWMWALRCKMAALAQILCTIKRDTTDRVVIVSNYTQTL 698

Query: 82  ARLQKAF----------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGG 129
             L+K                   K    ++ +N       +      + G GLNL  G 
Sbjct: 699 DHLEKLCAAYEFSFARLDGSTPTAKRQPIVEAFNSKYSTDYVFLLSSKAGGVGLNL-VGA 757

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             L+     W+        +   + R  + G  R V +Y ++   +IDE + QR  +K  
Sbjct: 758 CRLILVDTDWNPAN-----DLQAMARVWRDGQTRTVHLYRMLLTGSIDEKIYQRQLSKQG 812

Query: 190 IQDLL 194
           +   +
Sbjct: 813 LSVAV 817


>gi|150864667|ref|XP_001383600.2| helicase of the Snf2/Rad54 family [Scheffersomyces stipitis CBS 6054]
 gi|149385923|gb|ABN65571.2| helicase of the Snf2/Rad54 family [Scheffersomyces stipitis CBS 6054]
          Length = 1093

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                   +E+         +++    +I +     +++   F   L  L++   Q     
Sbjct: 906  TMSPYKLNEDAFLNSGKVLELQKTLKLIIEGRQEKVLIFSLFTQVLDILERVLTQFKYKF 965

Query: 91   -----GRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   +++     I E+ + + IP+      + G G+NL    N ++ F   ++  + 
Sbjct: 966  VRLDGATSVESRQDIIDEFYDDETIPIFLLSTKAGGFGINL-IAANNVIIFDQSFNPHD- 1023

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                ++    R  + G K+ V VY LI  +T++E +L+    K  +   +
Sbjct: 1024 ----DKQAEDRCHRVGQKKEVTVYKLIVNDTVEENMLKLAENKLQLDQTI 1069


>gi|118383249|ref|XP_001024779.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89306546|gb|EAS04534.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1046

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 47/233 (20%)

Query: 3   QYHKFQRELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y K  +          ++    +        +L N       +   +   + K    + 
Sbjct: 580 LYKKMIQ---ARYNKSELDTGEGAFGLLTIMRKLLNHPQLIYTDVGNQTSQEFKQYFPQD 636

Query: 62  I-------------------------IEKANAAPIIVAYHFNSDLARLQKAFPQ------ 90
                                     I + +   II+  ++   L  LQ    Q      
Sbjct: 637 YQLDDWEASFKFKFISDLLDQMRQIEIAQKSTERIIIVSYWTQTLDVLQIMIKQKNLKFV 696

Query: 91  ----GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    K    I  + +    I +     ++ G GLNL    N +V     W+    
Sbjct: 697 RLDGSVNAQKRQELIDRFQDPTNDIKVFLLCGSAGGTGLNL-SAANRMVLMEANWNPSND 755

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q++ RI      + G  + V +Y L+A  T++E VLQR   K  +   +++ 
Sbjct: 756 LQVMGRIW-----RDGQTKPVHIYRLVACGTMEEKVLQRQFLKEDLSQNVVDE 803


>gi|224116170|ref|XP_002317230.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222860295|gb|EEE97842.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 800

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
           N A Y         V D   K    I  KA     IV   +   L  L+          +
Sbjct: 616 NVACYDTSSGSRDSVKDGMDKRCLPI--KAVGEKAIVFSQWTGMLDLLEACLKNSSIQYR 673

Query: 97  D----------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         ++++N   ++ ++     +   GLN+    + ++   LWW+     
Sbjct: 674 RLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH-VLLLDLWWNPTT-- 730

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              E   + R  + G  RAV V  L  +NT+++ +L   + K  +        +
Sbjct: 731 ---EDQAIDRAHRIGQTRAVTVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 781


>gi|209945994|gb|ACI97228.1| okra [Drosophila melanogaster]
          Length = 167

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 75  MSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 129

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y L+A  +I+E +LQR   K 
Sbjct: 130 QAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKK 167


>gi|158289757|ref|XP_311416.4| AGAP010699-PA [Anopheles gambiae str. PEST]
 gi|157018480|gb|EAA07021.4| AGAP010699-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 72/211 (34%), Gaps = 28/211 (13%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--------HWKEVHDEKIKA 58
             RE+   +     +    AS+     ++          +                K+  
Sbjct: 351 LHREVKLIMGSGETKEMRIASRLPHMRKVIQHPYLIPGAENLNTNLVTDEIVQFSSKMIV 410

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE 106
           L+ ++ +  A  + +++   F + L                      + +    + E+N 
Sbjct: 411 LDKLLARLRARGSKVLIFSQFVTVLYLLMDYLDWREYEYCMLEGHTDIAERQEQMNEFNR 470

Query: 107 GKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G G+NL    + ++F+ + ++ +     ++     R  + G +R 
Sbjct: 471 PDSTKFVFLLSTRAGGLGINLPA-ADTVIFYDMDFNPQ-----MDFQAEDRAHRIGQQRK 524

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V+ L+ + +IDEL+      K  + + ++
Sbjct: 525 VHVFRLLVRGSIDELLYLHSERKRQLDEAVI 555


>gi|115442660|ref|XP_001218137.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188006|gb|EAU29706.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1063

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              +       K+    +    AN   ++V  H    L  LQ  F               
Sbjct: 666 NYANPDFCGKWKVLRRLLKWWHANGDKVLVFSHSVRLLKMLQMLFHHTSYNVSYLDGSMN 725

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            D     + E+N + +  +      S G GLN+    N +V     W+        +   
Sbjct: 726 YDDRAKAVNEFNADPRQFVFLISTRSGGVGLNITS-ANKVVVMDPNWNPS-----YDLQA 779

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  T++E+V  R   K    +
Sbjct: 780 QDRAYRIGQSRDVEVFRLISAGTVEEIVYARQIYKQQQAN 819


>gi|299469770|emb|CBN76624.1| Essential abundant protein involved in regulation of transcription
            [Ectocarpus siliculosus]
          Length = 2331

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +  +    +  ++ +  + +L         GLNL    +++VF    W+ +
Sbjct: 2157 KYLRMDGSVSQAERAAAVDRFSADPSVAILLLTTRVGHLGLNL-SAASMVVFLEHDWNPQ 2215

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 ++   + R  + G ++AV VY LIA +++++ VL+    K  +   +++    
Sbjct: 2216 -----VDLQAMDRAHRLGQRKAVNVYRLIAADSVEQRVLRLQGHKLQVAAAVVSRENA 2268


>gi|290994819|ref|XP_002680029.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin [Naegleria gruberi]
 gi|284093648|gb|EFC47285.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin [Naegleria gruberi]
          Length = 1283

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 32/223 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
            Y   Q +    L G+ +   +  +  ++  ++ N    + +E  +              
Sbjct: 740 LYQNIQDKNKIVLNGKKLRNTSLNNTVMQLRKVCNHPYLFFKETEYLNNLSDETYYDWMC 799

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
               K + L  I  K       +++       L   ++                      
Sbjct: 800 RSSGKFELLSRIFPKLKRTGHRVLLFSQMTQILDIFEEFLSHLGYEYLRLDGAVNAADRG 859

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +++WN    P  +      S G GLNLQ   + ++ F   W+ ++     +   + R 
Sbjct: 860 TLVKQWNAKDSPYFVFLLSTRSGGLGLNLQT-ADTVIMFDSDWNPQQ-----DLQAMARA 913

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  ++V V     +  ++E V  R + K   +  ++ A K
Sbjct: 914 HRIGQTKSVLVLTFCTRTPVEEKVRDRAQEKRDAEAKVIKAGK 956


>gi|312217656|emb|CBX97603.1| similar to helicase swr1 [Leptosphaeria maculans]
          Length = 1692

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 25/183 (13%)

Query: 22   AFNSASKTVKCLQLANGAVY-------YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
              + A    + LQ   G +          E    + +   ++  +  I+E+         
Sbjct: 1366 RQSIAFPDKRLLQYDCGKLQRLATLLRDLEAGGHRALIFTQMTKVLDILEQ--------- 1416

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
              F +              +++       +N + KI        S G G+NL  G + ++
Sbjct: 1417 --FLNIHGHRYLRLDGSTKIEQRQILTDRFNSDPKILAFILSSRSGGLGINLT-GADTVI 1473

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F+ L W+       +++    R  + G  R V +Y  +++ TI+  +L++   K  + D+
Sbjct: 1474 FYDLDWNPA-----MDKQCQDRAHRIGQTRDVHIYKFVSEYTIEANILRKSNQKRLLDDV 1528

Query: 194  LLN 196
            ++ 
Sbjct: 1529 IIQ 1531


>gi|302677518|ref|XP_003028442.1| hypothetical protein SCHCODRAFT_17379 [Schizophyllum commune H4-8]
 gi|300102130|gb|EFI93539.1| hypothetical protein SCHCODRAFT_17379 [Schizophyllum commune H4-8]
          Length = 939

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 19/166 (11%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPC 99
              K+  L  ++    A     IV   + S L  +   F                 +   
Sbjct: 737 PSTKMLKLLELLREWDATGDKTIVYSQWTSMLDLVDTVFSIHGISALRFDGRMDRQQRDA 796

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  +   G   ++         GLNL    N ++   L W+        E     R  +
Sbjct: 797 VLAAFKRPGGPKVILISTKCGSVGLNLVS-ANRVINLDLSWNYAA-----ESQAYDRCHR 850

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            G  + V++  L+ ++TI+E +L+    K  + +  L       +H
Sbjct: 851 IGQDKPVWIKRLVVEDTIEERMLKLQDVKVGLAEAALGEGTGTRLH 896


>gi|115643723|ref|XP_001199493.1| PREDICTED: similar to Smarca4 protein, partial [Strongylocentrotus
           purpuratus]
 gi|115665532|ref|XP_001186937.1| PREDICTED: similar to Smarca4 protein, partial [Strongylocentrotus
           purpuratus]
          Length = 642

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 36/199 (18%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVH----------------DEKIKALEVIIEKAN--AAP 70
            ++  ++ N    +   +     H                  K + L+ I+ K       
Sbjct: 12  IMQLRKICNHPFMFRHIEESFSEHLGVTGGIISGPDLYRVGGKFELLDRILPKLKALGHR 71

Query: 71  IIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLF--AHPAS 118
           I++     + +  L+  F                D     +Q +NE   P         +
Sbjct: 72  ILLFCQMTTLMTILEDFFVYRGFKYLRLDGTTKADDRGILLQTFNEANCPYFIFMLSTRA 131

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNLQ   + ++ F   W+  +     +     R  + G    V V  L+   +++E
Sbjct: 132 GGLGLNLQT-ADTVILFDSDWNPHQ-----DLQAQDRAHRIGQVNEVRVLRLMTVQSVEE 185

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L   R K  +   ++ A
Sbjct: 186 KILAAARWKMNMDSKIIQA 204


>gi|297734859|emb|CBI17093.3| unnamed protein product [Vitis vinifera]
          Length = 1025

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
               D EK+W E        LE+    +  +  I+   + + L  LQ    +         
Sbjct: 847  FQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLD 906

Query: 94   ----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    I+++  E  I +L     + G G+NL    +       WW+    +Q +
Sbjct: 907  GTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTA-ASNAFVLDPWWNPAVEEQAV 965

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             RI      + G  + V +   I + T++E +L     K  +    L
Sbjct: 966  MRI-----HRIGQTKRVMIKRFIVKGTVEERMLAVQARKQRMISGAL 1007


>gi|301107330|ref|XP_002902747.1| DNA repair protein RAD5, SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin, putative
            [Phytophthora infestans T30-4]
 gi|262097865|gb|EEY55917.1| DNA repair protein RAD5, SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin, putative
            [Phytophthora infestans T30-4]
          Length = 1036

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 66   ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFA 114
                 ++V   + S L               +F  G   +     + ++  +  + +L  
Sbjct: 878  DQKRKVVVFSQWTSMLGMVSQLLTRHGFSHCSFNGGLNQEARERVLTKFAKDPDVEVLVI 937

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    ++++    WW+    +Q ++R+      + G  + V V   +  N
Sbjct: 938  SLKAGGVGLNLT-CASVVILLDPWWNPGVEEQAVDRV-----HRLGQTQDVIVKRYVVNN 991

Query: 175  TIDELVLQRLRTKSTIQDLLL------NALKKETIHV 205
            T+++++LQ  + K  +   +L      +  + E +++
Sbjct: 992  TVEDMILQLQQRKEKLAKHVLVVAKAHDERRSERLNL 1028


>gi|169602773|ref|XP_001794808.1| hypothetical protein SNOG_04389 [Phaeosphaeria nodorum SN15]
 gi|160706250|gb|EAT88149.2| hypothetical protein SNOG_04389 [Phaeosphaeria nodorum SN15]
          Length = 1065

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 22/204 (10%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGA---VYYDEEKHWKEVHDEKIKALEVII 63
            + E +       I       +  +C QLA      +   E ++ + +   K+ AL  ++
Sbjct: 800 IKEEYFAASDPATIFEELQLYQDYQCHQLALKWPKTLKKFELQNHEWMDSGKVTALFALL 859

Query: 64  EKA--NAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIP 110
           ++   N    +V   F S          + A           + +    +  +  +  I 
Sbjct: 860 KQYKANGDRALVFSQFTSVMDILSWVFDEHAIDFMRMDGSTPIAERQSLMDAFYADESIG 919

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      S G G+NL    N +V F   ++ ++     +     R  + G  R V V  L
Sbjct: 920 VFMISTKSGGAGINL-ACANKVVIFDSSFNPQD-----DVQAENRAHRVGQTREVEVVRL 973

Query: 171 IAQNTIDELVLQRLRTKSTIQDLL 194
           + + T++E +     +K  +  ++
Sbjct: 974 VTRGTVEEQIYALGVSKLELDKMV 997


>gi|19112177|ref|NP_595385.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe 972h-]
 gi|74625356|sp|Q9P793|MIT1_SCHPO RecName: Full=Chromatin remodeling factor mit1; AltName:
            Full=Mi2-like interacting with clr3 protein 1; AltName:
            Full=Snf2/Hdac-containing repressor complex protein mit1;
            Short=SHREC protein mit1
 gi|7573203|emb|CAB87372.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe]
          Length = 1418

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
             ++  +       Y  +   + +              K   L +++ K       I++  
Sbjct: 835  LMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRGHRILLFS 894

Query: 76   HFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGL 123
             F   L  L+  F              +  +    I  +N              + G G+
Sbjct: 895  QFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGI 954

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         + R  + G K+ V V+ L  +++++E ++Q 
Sbjct: 955  NL-ASADTVIILDPDFNPHQDM-----QAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQN 1008

Query: 184  LRTKSTIQDLLLNALKK 200
             + K  +  L++ +L +
Sbjct: 1009 AQKKLVLDHLIVESLDQ 1025


>gi|156049585|ref|XP_001590759.1| hypothetical protein SS1G_08499 [Sclerotinia sclerotiorum 1980]
 gi|154692898|gb|EDN92636.1| hypothetical protein SS1G_08499 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 915

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             R      + E I     +SKT   +Q+    V +++      +  +   +   II+K 
Sbjct: 722 LVRPAVEKAEAEEINTDEKSSKTEALMQIIK--VTHNDPLSKVVIFSQ-WTSFLNIIQKQ 778

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                I                       +D       ++ +  +L A  A C  GLNL 
Sbjct: 779 LEQSGIKFAR----------IDGSMTAPQRDKGMQSLESDPECRVLLASLAVCSVGLNLV 828

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++    WW        IE   V R  + G KR   V+ L+ + +I+E VL+    
Sbjct: 829 S-ADTVILADSWWAPA-----IEDQAVDRVYRLGQKRDCKVWRLVMEGSIEERVLEIQGE 882

Query: 187 KSTIQDLLLNALKKET 202
           K  +         +E 
Sbjct: 883 KRKLAGKAFQEKAREG 898



 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 10/55 (18%)

Query: 1   MKQYHKFQREL--YCDL--------QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +K Y    ++               +   I   +     ++  Q+ N     +  
Sbjct: 583 LKVYEALVKQAQGMAQQYQKESESRKKNTISYTHILEILLRMRQVCNHWKLCENR 637


>gi|255576850|ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 1051

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 17/154 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             + ++ LE I         I+   + S L  L+            F       +   T++
Sbjct: 886  SKLLECLERIRRSDCGEKSIIFSQWTSFLDLLEIPLRRRAIGFLRFDGKLVQKQRERTLK 945

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E+NE K   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 946  EFNETKEKMVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI-----HRIGQ 999

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            KR V V   I ++T++E + Q    K  +    L
Sbjct: 1000 KRTVTVRRFIVKDTLEERMQQVQARKQRMIAGAL 1033


>gi|291526268|emb|CBK91855.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium rectale
           DSM 17629]
          Length = 559

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 26/208 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY   +  +  D++   + + N  + T++  QL +G                K+  ++ 
Sbjct: 349 KQYRDIKNGIVADMEN-ILASVNPLNCTLRLRQLTSG-------NPNLTDDSPKLDRIKE 400

Query: 62  IIEK---ANAAPIIVAYHFNS-------DLARLQKAFPQGRTLDK-DPCTIQEWN-EGKI 109
           ++E+    N    I+   +++       +L+        G    +     +  +      
Sbjct: 401 MLEEEIIPNGHKAIIFSQWSTIAKDLGIELSEYDPIVITGEVHPEQRQKLVDNFQTNPHC 460

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL L    + + F    W+  ++          R  + G   AV V  
Sbjct: 461 KVAIGTIGAMGTGLTL-NKASYVFFMDKAWNSGDN-----AQAEDRAHRIGTVGAVNVIS 514

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++A+ TIDE V   L     + D +++ 
Sbjct: 515 MVAKGTIDEAVEDYLLENKDLIDRVVDG 542


>gi|331238525|ref|XP_003331917.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309310907|gb|EFP87498.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1036

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 17/151 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI 109
             + +  +    IV   F   L  +++                    ++       N   +
Sbjct: 876  KLNQSDHTIKSIVFSQFTVFLDLIERRLQLAGFKLARLQGNMTPEARNRTIQYFMNNNDV 935

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G  LNL    + +     WW+     Q ++RI      + G  R V V  
Sbjct: 936  QVFLVSLKAGGVALNLTE-ASRVFIMDPWWNPAVELQAMDRI-----HRLGQHRPVVVTR 989

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            LI +N+I+  +++  + K  +    L    +
Sbjct: 990  LIIENSIESRIVELQKKKEAMTGAALGDDDQ 1020


>gi|238909201|ref|YP_002939668.1| non-specific serine/threonine protein kinase [Eubacterium eligens
           ATCC 27750]
 gi|238873438|gb|ACR73147.1| non-specific serine/threonine protein kinase [Eubacterium eligens
           ATCC 27750]
          Length = 559

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 26/208 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY   +  +  D++   + + N  + T++  QL +G                K+  ++ 
Sbjct: 349 KQYRDIKNGIVADMEN-ILASVNPLNCTLRLRQLTSG-------NPNLTDDSPKLDRIKE 400

Query: 62  IIEK---ANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKI 109
           ++E+    N    I+   +                         ++    +  +      
Sbjct: 401 MLEEEIIPNGHKAIIFSQWSTIAKDLGIELSEYDPIVITGEVPPEQRQRLVDNFQTNPHC 460

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL L    + + F    W+  ++          R  + G   AV V  
Sbjct: 461 KVAIGTIGAMGTGLTL-NKASYVFFMDKAWNSGDN-----AQAEDRAHRIGTVGAVNVIS 514

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           ++A+ TIDE V   L     + D +++ 
Sbjct: 515 MVAKGTIDEAVEDYLLENKDLIDRVVDG 542


>gi|290988418|ref|XP_002676918.1| predicted protein [Naegleria gruberi]
 gi|284090523|gb|EFC44174.1| predicted protein [Naegleria gruberi]
          Length = 1056

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 33/225 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
            Y           + +     +            N        + +              
Sbjct: 460 VYRAIVERKVNFFRKQFASKQDLTYIVNSLRYCCNHPCLISGMEEYLRDEQKRDDKGILI 519

Query: 52  -HDEKIKALEVIIEKANA--APIIVAYHFNSDL----------ARLQKAFPQGRTLDKDP 98
               K+  +  +++K        ++   F   L                       ++  
Sbjct: 520 YSSSKMVVVHKLLKKFRDANEKTLILSQFLEMLDVLESYLQSEQISYVRIDGSCPSEERQ 579

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++  + +  +          G+NL    N ++ +   ++        +     R  
Sbjct: 580 RYIDKFQTDSECRVFLLSTKISQ-GINLTA-ANHVIIYDSDFNP-----FNDSQAAARAH 632

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-NALKKE 201
           + G  + VFVY L+ +++ ++ ++ R   K   + L+L  + K +
Sbjct: 633 RIGQTKKVFVYRLVTKDSYEKYIISRASKKLGREKLVLAESDKSD 677


>gi|195498627|ref|XP_002096604.1| GE24955 [Drosophila yakuba]
 gi|194182705|gb|EDW96316.1| GE24955 [Drosophila yakuba]
          Length = 1055

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
               KI  +  I++     ++    IV   + S L  L++                 +   
Sbjct: 882  PSSKINMVIQILKTSILNSSDDKAIVVSQWTSVLDILREHLSNDGVTTLSLNGTIPVKNR 941

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N+   +  +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 942  QDIVNQFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 995

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 996  IYRVGQKKNVTIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 1039



 Score = 41.3 bits (95), Expect = 0.091,   Method: Composition-based stats.
 Identities = 4/57 (7%), Positives = 17/57 (29%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           Y   ++          +++ +     ++  Q+       D     +E    +  + +
Sbjct: 761 YKMHEKFARMAGSKREVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQSLRDHSSD 817


>gi|312219184|emb|CBX99128.1| similar to SNF2 family helicase/ATPase PasG [Leptosphaeria
           maculans]
          Length = 907

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 41/222 (18%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------- 52
           R    ++    +      +  ++     N    +       E+                 
Sbjct: 595 RAATFEIAKRQLMQKKLGNPIMQLRLCCNSPYNFFNPFLKTEIEGSETFASEIEPDETLV 654

Query: 53  --DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
               K+  L+ ++ +       +++   F + L                           
Sbjct: 655 STSGKMLLLDTLLPELIKRGHKVLIFSQFTTTLDLLGQYLDLRSWKYARIDGSVAQSDRQ 714

Query: 99  CTIQEWNEGK-----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             I  +N+         +      + G G+NL    + ++ F   W+ ++     +   +
Sbjct: 715 EQILAFNKPNKSKDATDIFILSTRAGGQGINL-AAADTVILFDSDWNPQQ-----DLQAM 768

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G  R V VY    +NT+++ +L+    K  ++ L++
Sbjct: 769 DRAHRIGQTRNVIVYRFATRNTVEQKLLESAEGKRRLEKLVI 810


>gi|116235007|dbj|BAF34943.1| chromatin remodeling factor DDM1b [Oryza sativa Japonica Group]
 gi|116235011|dbj|BAF34945.1| chromatin remodeling factor DDM1b [Oryza sativa Japonica Group]
 gi|222625697|gb|EEE59829.1| hypothetical protein OsJ_12393 [Oryza sativa Japonica Group]
          Length = 849

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------------APII 72
             ++  +  N     +               +E ++E+                    ++
Sbjct: 574 LLIQLRKNCNHPDLLESAYD----SSGMYPPVEKLLEQCGKFQLLNRLLNLLLARKHKVL 629

Query: 73  VAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  ++                  L++    I E+N+    + +      + G
Sbjct: 630 IFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGG 689

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +
Sbjct: 690 LGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRI 743

Query: 181 LQRLRTKSTIQDLLLN 196
           +++   K  ++ +++ 
Sbjct: 744 IKKAFGKLRLEHVVIG 759


>gi|212532483|ref|XP_002146398.1| DNA excision repair protein Rad16, putative [Penicillium marneffei
           ATCC 18224]
 gi|210071762|gb|EEA25851.1| DNA excision repair protein Rad16, putative [Penicillium marneffei
           ATCC 18224]
          Length = 951

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I  +     +
Sbjct: 789 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGSMTPTQRQNSIDHFMKNVDV 848

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 849 EVFLVSLKAGGVALNLTE-ASRVFIIDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 902

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + + + 
Sbjct: 903 LCIEDSVESRMVALQEKKANMINGTINKDQGDALE 937


>gi|289618348|emb|CBI55072.1| unnamed protein product [Sordaria macrospora]
          Length = 972

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
           E +      D  ++ ++  + K     +I+   + S L  +Q    +             
Sbjct: 793 ESETKSSKTDAVLRLVKDSLGKDAGNKVIIFSQWTSFLTIIQHQLDEAGYTYTRIDGSMN 852

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  +D        +    +L A    C  GLNL    N ++    WW        IE   
Sbjct: 853 TAQRDAAIRALDYDPNTRILLASLGVCSVGLNLVS-ANTVILADSWWAPA-----IEDQA 906

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V R  + G  R   VY L+ +NTI+E VL   + K  +     
Sbjct: 907 VDRVHRLGQTRETNVYRLVMENTIEERVLDIQKEKRELVGKAF 949


>gi|218193665|gb|EEC76092.1| hypothetical protein OsI_13335 [Oryza sativa Indica Group]
          Length = 850

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------------APII 72
             ++  +  N     +               +E ++E+                    ++
Sbjct: 575 LLIQLRKNCNHPDLLESAYD----SSGMYPPVEKLLEQCGKFQLLNRLLNLLLARKHKVL 630

Query: 73  VAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  ++                  L++    I E+N+    + +      + G
Sbjct: 631 IFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGG 690

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +
Sbjct: 691 LGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRI 744

Query: 181 LQRLRTKSTIQDLLLN 196
           +++   K  ++ +++ 
Sbjct: 745 IKKAFGKLRLEHVVIG 760


>gi|212543509|ref|XP_002151909.1| DNA excision repair protein (Rad26L), putative [Penicillium
           marneffei ATCC 18224]
 gi|210066816|gb|EEA20909.1| DNA excision repair protein (Rad26L), putative [Penicillium
           marneffei ATCC 18224]
          Length = 1059

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              +
Sbjct: 618 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGAMS 677

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + E+N + +  +      + G GLN+    N +V     W+        +   
Sbjct: 678 YEDRAKVVDEFNSDPQQFVFLISTRAGGVGLNIVS-ANKVVVVDPNWNPSH-----DLQA 731

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 732 QDRAYRIGQHRDVEVFRLISAGTIEEIVYARQIYKQQQAN 771


>gi|325181157|emb|CCA15572.1| CHROMODOMAIN HELICASE DNA BINDING putative [Albugo laibachii Nc14]
          Length = 1918

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 71/238 (29%), Gaps = 47/238 (19%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYD----------EEKHWK 49
           + Y          L   G   +  +  +  ++  +  N                E++   
Sbjct: 693 QYYRAIYERNVAFLIRGGRRADGPSLMNVMMELRKCCNHPFLIKGVEQREIERLEKQEGI 752

Query: 50  EVHDEKIKALEVII----------------EKANAAPIIVAYHFNSDLARLQKA------ 87
            +H +K      ++                 +     +++   F   L  LQ        
Sbjct: 753 PLH-QKEAQARELLVTSSGKLILLDKLLPLLEKGGHRVLIFSQFKIMLDILQDYLSLRGF 811

Query: 88  ----FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    T ++    I  +     +  ++     + G G+NL    + ++ +   W+ 
Sbjct: 812 KFERIDGNITGNERQAAIDRYCGTSNQAFVMLISTRAGGVGINLTA-ADTVIIYDSDWNP 870

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +      +     R  + G  ++V +Y L+   T +  +  +   K  +  ++L  ++
Sbjct: 871 QN-----DLQAQARCHRIGQTKSVKIYRLLTSKTYELQMFHQASIKLGLDQVVLGGMQ 923


>gi|302810562|ref|XP_002986972.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
 gi|300145377|gb|EFJ12054.1| hypothetical protein SELMODRAFT_40849 [Selaginella moellendorffii]
          Length = 849

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI AL  I++K      +   +V   F+S L   +    Q          G +  K 
Sbjct: 675 SSAKITALLSILDKTRAKDPSIKTVVFSQFSSMLKLAEAPLTQAGYKFVKLQGGMSAKKR 734

Query: 98  PCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +         +      + G GLNL    + +V    WW+        E   + 
Sbjct: 735 DEAMEAFKSTSKDSPTVFLLSLKAAGVGLNLVS-ASNVVMLDPWWNPAA-----EEQAMD 788

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           R  + G  R V V+ L+A ++I+E +LQ    K     + L     E
Sbjct: 789 RVHRLGQTRDVHVFRLVATDSIEERLLQMQEKKRAYAQIALGKEASE 835


>gi|317150332|ref|XP_001823954.2| DNA excision repair protein (Rad26L) [Aspergillus oryzae RIB40]
          Length = 970

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    +N   ++V  H    L  LQ  F              +
Sbjct: 648 NYANPEFCGKWKVLRRLLKWWHSNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMS 707

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + E+N + +  +      + G GLN+    N +V     W+        +   
Sbjct: 708 YEDRATAVDEFNSDPRQFVFLISTRAGGVGLNITS-ANKVVVVDPNWNPS-----YDLQA 761

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 762 QDRAYRIGQVRDVEVFRLISAGTIEEIVYARQIYKQQQAN 801


>gi|308472052|ref|XP_003098255.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
 gi|308269241|gb|EFP13194.1| hypothetical protein CRE_08427 [Caenorhabditis remanei]
          Length = 205

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 20/166 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
             K+K    I+         +++   + S L  +++   Q                    
Sbjct: 33  SCKMKKTLQILSNIVEKGEKVVIVSQWTSVLELIEEHIKQYAIRYTSITGQIPVKDRQER 92

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           +  +N   G   ++     + G GLNL  GGN L+   L W+    QQ  +RI      +
Sbjct: 93  VDSFNREVGGAKVMLLSLTAGGVGLNLT-GGNHLIMIDLHWNPALEQQAFDRI-----YR 146

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            G K+ VF++ LI + TI++ V++  ++K T+   +L+      ++
Sbjct: 147 MGQKKPVFIHRLITKGTIEQRVVELQKSKLTLASSVLDGTATRKMN 192


>gi|224049423|ref|XP_002191909.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 1108

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 19/176 (10%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +        + +   K +ALE I+   K     +++   F   L  L+      +    
Sbjct: 921  HINDFMLDMDQILDSGKFRALERILSNLKEKGDRVVLFSQFTMMLDILEVLLKHWQHRYL 980

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    NI++   +  +     
Sbjct: 981  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANIVILHDIDCNP---- 1035

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               ++    R  + G  R V V  LI++ TI+E +L+  + K  ++  +  A   E
Sbjct: 1036 -YNDKQAEDRCHRVGQTREVQVIKLISKGTIEETMLKISQQKLKLEQDMTAAESGE 1090


>gi|238499559|ref|XP_002381014.1| DNA excision repair protein (Rad26L), putative [Aspergillus flavus
           NRRL3357]
 gi|220692767|gb|EED49113.1| DNA excision repair protein (Rad26L), putative [Aspergillus flavus
           NRRL3357]
          Length = 882

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    +N   ++V  H    L  LQ  F              +
Sbjct: 606 NYANPEFCGKWKVLRRLLKWWHSNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMS 665

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + E+N + +  +      + G GLN+    N +V     W+        +   
Sbjct: 666 YEDRATAVDEFNSDPRQFVFLISTRAGGVGLNITS-ANKVVVVDPNWNPS-----YDLQA 719

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 720 QDRAYRIGQVRDVEVFRLISAGTIEEIVYARQIYKQQQAN 759


>gi|71027005|ref|XP_763146.1| global transcription activator [Theileria parva strain Muguga]
 gi|68350099|gb|EAN30863.1| global transcription activator (SNF2L2), putative [Theileria parva]
          Length = 998

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 22  AFNSASKTVKCLQLANGAVY-----YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVA 74
             ++ +K ++  ++ N         +            K+  L++I+ +       +++ 
Sbjct: 649 TVHTQNKFLQLRKICNHPFLYINSNFIPCNDLIINSSGKMCILDMILSRLYYVNHRVLIF 708

Query: 75  YHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHG 122
               S L  L+                 + +K    I  +NE      +      +   G
Sbjct: 709 SQMTSLLDILEVYLNYRGYKYLRLDGNLSSEKRLERINLFNEPDSQYFVFILSTKAGSLG 768

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ   + ++ +   W+ +      +    +R  + G K  V    LI  NTI++ + +
Sbjct: 769 INLQS-ADTVIIYDSDWNPQN-----DLQAQSRVHRIGQKNQVITLRLITPNTIEDNIYR 822


>gi|299754940|ref|XP_001828301.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
 gi|298410995|gb|EAU93652.2| hypothetical protein CC1G_02882 [Coprinopsis cinerea okayama7#130]
          Length = 836

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 38  GAVYYDEEKHWKEVHD-----EKIKALEVII--EKANAAPIIVAYHFNSDLAR------- 83
                +E     ++        K + +  ++          ++   F + L         
Sbjct: 643 HPPLDEELGKPGDIFSDGFLSSKFQVVLGLLRRHYRKNEKTLIFSSFVTVLDVLSECLDA 702

Query: 84  ----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                 +      T  +         + +  ++     S G GLN+    N +V    WW
Sbjct: 703 HGIGHVRYDGSMSTKARQEALDSIVQDDESMVMLVSIKSGGTGLNITS-CNNVVILDPWW 761

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +       +E   ++R  + G ++ V VY + A NT+++ + +    K  I D L +   
Sbjct: 762 NP-----YVEEQAISRAHRLGQEKEVNVYRITAPNTVEDKICKTQHRKFNIIDPLQDRCA 816

Query: 200 KETIH 204
             TIH
Sbjct: 817 ATTIH 821


>gi|134083904|emb|CAK48808.1| unnamed protein product [Aspergillus niger]
          Length = 875

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKD 97
              KI+AL  I+    +A     ++   + S L  ++    +             ++ +D
Sbjct: 700 PSSKIEALIKILTAKGQAQGTKTVIFSQWTSFLDLIEPHLFRHGIGFARIDGKMSSISRD 759

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T++   +    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 760 NSTLRFSTDPSCTVLLASLSVCSVGLNLVA-ANQAILCDSWWAPA-----IEDQAVDRVY 813

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G  R   V+ L+ +++I++ VL     K  +    L A ++
Sbjct: 814 RLGQTRETTVWRLVMEDSIEDRVLAIQENKRKLM---LEAFRE 853


>gi|39940416|ref|XP_359745.1| hypothetical protein MGG_05032 [Magnaporthe oryzae 70-15]
 gi|145010723|gb|EDJ95379.1| hypothetical protein MGG_05032 [Magnaporthe oryzae 70-15]
          Length = 1166

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
            I+ L  +  +   A ++V   F S L                             ++E+ 
Sbjct: 1002 IQHLRDLRRERPRAKVVVFSQFTSFLTLIEGSLDRANMHHVRLDGTMAQKTRVAVLEEFK 1061

Query: 106  EG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               K  +      + G GLNL    + +     WW      Q I+R+      + G    
Sbjct: 1062 ACSKFTVFLISLRAGGVGLNLTE-ASRVYMCDPWWSFSVESQAIDRV-----HRMGQSEE 1115

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V VY  I +N+++E +L+    K  I     +++  +K    +
Sbjct: 1116 VKVYRFIVKNSVEERMLKIQDRKKFIATSLGMMSDDEKRLARI 1158


>gi|289577895|ref|YP_003476522.1| SNF2-related protein [Thermoanaerobacter italicus Ab9]
 gi|289527608|gb|ADD01960.1| SNF2-related protein [Thermoanaerobacter italicus Ab9]
          Length = 931

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 32/215 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIK 57
           K Y +   +          ++ +      K ++L        +E             K++
Sbjct: 703 KLYCQLIEDY-----KNKGKSESPLGVLQKLMELCAHPRLVRDEGEVNTFQLLSESGKLQ 757

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            L  ++ +        ++  H+    A L+               G         I ++ 
Sbjct: 758 RLIELLNEIKRRGEKAVIFTHYIKMQAILRKVIMDVFGINCPVINGSIKGDRMNVIDKFK 817

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E     ++     + G G+ +    N ++ ++  W+       +E+    R  + G  R 
Sbjct: 818 ESSGFGVIILSTRAAGVGITITE-ANNVIHYTRDWNPA-----VEKQATDRVYRIGQTRE 871

Query: 165 VFVYYLIA----QNTIDELVLQRLRTKSTIQDLLL 195
           V +YY I       T++E + + L+ K  + + ++
Sbjct: 872 VNIYYPICISSRGKTVEERLNEVLQKKLQLLNEVI 906


>gi|190344615|gb|EDK36323.2| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F +              +++     + +N + KIP+      S G G+NL  G + ++F
Sbjct: 254 QFLNIHGYRYMRLDGATKIEERQVLTETFNRDPKIPVFILSTRSGGLGINLT-GADTVIF 312

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+       +++    R  + G  R V +Y  +++ TI+  +L++   K  + +++
Sbjct: 313 YDSDWNPA-----MDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVV 367

Query: 195 LNALK 199
           +   +
Sbjct: 368 IQEGE 372


>gi|149245206|ref|XP_001527137.1| hypothetical protein LELG_01966 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449531|gb|EDK43787.1| hypothetical protein LELG_01966 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 357

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 78  NSDLARLQKAFPQGRTLDK-DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
              L  +      G T  +     ++++  +  I +L       G    L  G + ++F 
Sbjct: 146 KKYLPSVTYMRLDGSTDPRHRQSIVRKFDEDPSIDVLLLTTKVGGLAEYLT-GADTVIFV 204

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W+      M +   + R  + G K+ V VY LI ++T++E ++   + K  I   ++
Sbjct: 205 EHDWNP-----MNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMNIASTIV 259

Query: 196 N 196
           N
Sbjct: 260 N 260


>gi|255089631|ref|XP_002506737.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226522010|gb|ACO67995.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1587

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 70/244 (28%), Gaps = 54/244 (22%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFNSASKTVKCLQLANGAVYYDEEKH----------- 47
           K Y       +  L     ++    N ++  ++  +        D  +            
Sbjct: 659 KCYRALFERNFSFLRQGSKDDRALANFSNLMMEVRKCCQHPFLLDGVEEAFVSQQMSKKG 718

Query: 48  -----------WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---- 90
                             K++ L+ ++   KA     ++       L  L+         
Sbjct: 719 GKRPAKTATAAELVACSGKLQLLDKLLPRLKAGGHRALIFSQMTRVLDVLEDYCRNRGHS 778

Query: 91  ------GRTLDKDPCTIQEWNEGK-----------IPLLFAHPASCGHGLNLQYGGNILV 133
                 G T       I  +  G              L      + G G+NL    + ++
Sbjct: 779 YERLDGGVTGRARQAAIDRFCCGSNATDAGHSDEGAFLFLLSTRAGGQGINLVA-ADTVI 837

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+ +      +   + R  + G  + V VY L+ + T +  +L R   K  ++  
Sbjct: 838 VFDSDWNPQN-----DAQALARAHRIGQTKPVQVYRLVMRATYERDMLDRAAMKLGLEQA 892

Query: 194 LLNA 197
           + ++
Sbjct: 893 IFSS 896


>gi|83772693|dbj|BAE62821.1| unnamed protein product [Aspergillus oryzae]
          Length = 867

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    +N   ++V  H    L  LQ  F              +
Sbjct: 606 NYANPEFCGKWKVLRRLLKWWHSNGDKVLVFSHSVRLLRMLQMLFHHTSYNVSYLDGSMS 665

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + E+N + +  +      + G GLN+    N +V     W+        +   
Sbjct: 666 YEDRATAVDEFNSDPRQFVFLISTRAGGVGLNITS-ANKVVVVDPNWNPS-----YDLQA 719

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 720 QDRAYRIGQVRDVEVFRLISAGTIEEIVYARQIYKQQQAN 759


>gi|225432997|ref|XP_002280814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1224

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             E +  LE I +       IV   + S L  L+            +       +    ++
Sbjct: 1059 SELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILK 1118

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E++E +   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 1119 EFSETEEKTVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI-----HRIGQ 1172

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +R V V   I ++T++E + Q    K  +    L   +  T  +
Sbjct: 1173 ERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARI 1216



 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 2/30 (6%), Positives = 7/30 (23%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
              +     ++  Q  N           ++
Sbjct: 912 NYASILELLLRLRQCCNHPFLVMSRGDTQQ 941


>gi|50294037|ref|XP_449430.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528744|emb|CAG62406.1| unnamed protein product [Candida glabrata]
          Length = 920

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 36/230 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
           +K +      +  D+    I    S        ++ N       + +++           
Sbjct: 567 IKAFRDIIENVRVDMNN--ITFNTSLGLINLMKKVCNSPSLLCNDPYYQSNVDSNIFTVS 624

Query: 52  ----HDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRT 93
                  K+      L  I   +    +++  ++   L  +Q                  
Sbjct: 625 NKSNSSGKLTVLLELLLEIKATSPMEKVVIVSNYTQSLDIIQGLMNSNQLSNCRLDGATP 684

Query: 94  LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    +  +N    I        + G GLNL  G + LV F   W+       ++   
Sbjct: 685 AKQRDMLVNTFNNNPNIFGFLLSAKAGGVGLNL-IGASRLVLFDNDWNPA-----VDLQA 738

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++R  + G KR  ++Y LI    IDE +LQR   K  +    L++   +T
Sbjct: 739 MSRIHREGQKRPCYIYRLITTGCIDEKILQRQLMKHNLTRKFLSSNTSDT 788


>gi|198426669|ref|XP_002129254.1| PREDICTED: ATRX protein [Ciona intestinalis]
          Length = 1900

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       ++    I ++N   + +  L+     + G G+NL  G N  + F   W+
Sbjct: 1534 DYYRMDGSTKNERRKTIIDQFNNESDTRCRLMLVSTRAGGIGINL-VGANRAIVFDASWN 1592

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I RI      + G  +  ++Y  IAQ T++E +  R   K ++   +++ 
Sbjct: 1593 PTHDVQSIFRI-----YRFGQTKPCYIYRFIAQGTMEEKIYDRQVVKQSLASRVVDE 1644


>gi|145345466|ref|XP_001417230.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577457|gb|ABO95523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 898

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K + L  ++   +A     +V     + L  ++    +                +D  
Sbjct: 498 SAKSRFLMAMLDRFRAEGRRTLVFSQSQATLNVVEACIREANIKFVRIDGKVNVDERDRR 557

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             Q  +   IP++       G GL L      ++ +   W+     Q ++R       + 
Sbjct: 558 VTQFRSNADIPVMLLTARVGGLGLTLTE-ATRVIIYDPAWNPTTDNQSVDR-----AYRI 611

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G  + V VY L+   T++E + +R   K  +     + +  +
Sbjct: 612 GQTKDVVVYRLVTCGTVEEKIYRRQVFKGGVSKSATDGVSGK 653


>gi|255724926|ref|XP_002547392.1| hypothetical protein CTRG_01699 [Candida tropicalis MYA-3404]
 gi|240135283|gb|EER34837.1| hypothetical protein CTRG_01699 [Candida tropicalis MYA-3404]
          Length = 1695

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F +              ++      +++N + KIP+      S G G+NL  G + ++F
Sbjct: 1452 QFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLT-GADTVIF 1510

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       +++    R  + G  R V +Y  +++ TI+  ++++   K  + +++
Sbjct: 1511 YDSDWNPA-----MDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVV 1565

Query: 195  LNALK 199
            +   +
Sbjct: 1566 IQEGE 1570


>gi|255943149|ref|XP_002562343.1| Pc18g05160 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587076|emb|CAP94740.1| Pc18g05160 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1022

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    +N   +++  H    L  LQ  F              +
Sbjct: 594 NYANPEFCGKWKVLRKLLKWWHSNGDKVLIFSHSVRLLKMLQMLFHHTSYNVSYLDGSMS 653

Query: 94  LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           L      + E+N      +      + G GLN+    N +V     W+        +   
Sbjct: 654 LQDRAKAVDEFNADSRQFVFLISTKAGGVGLNITS-ANKVVVVDPNWNPS-----YDLQA 707

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 708 QDRAYRIGQLRDVEVFRLISAGTIEEIVYARQIYKQQQAN 747


>gi|170097135|ref|XP_001879787.1| RAD26-like SNF2 family DNA-dependent ATPase [Laccaria bicolor
           S238N-H82]
 gi|164645190|gb|EDR09438.1| RAD26-like SNF2 family DNA-dependent ATPase [Laccaria bicolor
           S238N-H82]
          Length = 1000

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 15/190 (7%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +     ++     +     +  ++  Q        +           K+      + 
Sbjct: 556 QTARNRALAEIAFPEGDIPKYGTAMMQ-TQYCGKWAVLEILLKEWRKETNKV------LI 608

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEW-NEGKIPLLFAHPASCGHG 122
              +  ++    F+ +          G T   D    I  + N+ ++ +      + G G
Sbjct: 609 FTKSVKLLEMLEFHLNNKGYGFLKLDGSTKQSDRMPMIDRFHNDPEVFIFLISTLAGGTG 668

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL  G N +V F   W+        +   + R  + G  R V VY L+   +++EL+  
Sbjct: 669 LNLT-GANKVVIFDPNWNPAH-----DLQAMDRAFRFGQTRDVSVYRLLGAGSVEELIYA 722

Query: 183 RLRTKSTIQD 192
           R   K     
Sbjct: 723 RQIYKQQQMA 732


>gi|302901999|ref|XP_003048558.1| hypothetical protein NECHADRAFT_47402 [Nectria haematococca mpVI
           77-13-4]
 gi|256729491|gb|EEU42845.1| hypothetical protein NECHADRAFT_47402 [Nectria haematococca mpVI
           77-13-4]
          Length = 455

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 11/147 (7%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
           +      H  K+ A+   I +++      A   +  L        +    ++        
Sbjct: 289 QGRSLRPHSTKLSAVVENIARSSVETKQSAAKIDHVL-----IDGRTNYSERSRRLKAFK 343

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +I +L     +   GLNL    N++      W+       +E   V R  + G ++A
Sbjct: 344 EDSRITVLVMSIETGAVGLNLT-VANVVHIVEPQWNPS-----VEAQAVARALRMGQQKA 397

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V +Y  I + T++E +++    K  + 
Sbjct: 398 VTIYRYIMKGTVEERIIELQERKKKLA 424


>gi|218189474|gb|EEC71901.1| hypothetical protein OsI_04668 [Oryza sativa Indica Group]
          Length = 1105

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 32/211 (15%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVII 63
           QRELY ++   N    NSA        + NG     +      +       K++ L  ++
Sbjct: 786 QRELYINILERNYSKLNSA--------IRNGLEVGQQATEDVFLSLIASSGKLQLLHKLL 837

Query: 64  E--KANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DPCTIQEWN--EGKI 109
              K     +++       L  L+      G    +            +I+E+   + + 
Sbjct: 838 PRLKERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQESIKEYKNIDSET 897

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G++L  G + ++ +   ++       ++    +R  + G  R V VY 
Sbjct: 898 FIFLMSTRAGGMGVDL-PGADRVIIYDPDFNP-----FMDLQAQSRAHRIGQTRPVVVYQ 951

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LI + +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 952 LITKCSVEEKILQKSKQKLAIENMLMNSSKK 982


>gi|156554595|ref|XP_001604594.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 1968

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    +  +    I E+N   K+ L      +   G+NL  G N  + F   W+   
Sbjct: 1017 YYRLDGSTSALEREKLINEFNVNPKVHLFLVSTRAGSLGINL-VGANRAIVFDASWNP-- 1073

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 +   V R  + G ++  +VY L+  N ++  +  R  +K  + D +++
Sbjct: 1074 ---CHDTQAVCRVYRYGQQKNCYVYRLVTDNCLERKIYDRQISKQGMADRVVD 1123


>gi|328698504|ref|XP_001947753.2| PREDICTED: transcription termination factor 2-like [Acyrthosiphon
           pisum]
          Length = 807

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGK- 108
           + ++   N    I+   + S L  + K                 + K    I+E+N+   
Sbjct: 644 QKVLNGGNREKAIIVSQWTSFLYLIHKHLVYYNAKMEMFSGAIPIPKRNKIIREFNDPNG 703

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L     S   GLNL    N +      W+ +   Q  +RI      + G  + V++
Sbjct: 704 GPQILLLSLKSGCVGLNLMA-ANHMFLVDNHWNPQLEAQACDRI-----YRIGQTKPVYI 757

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           Y  I  NTI+  +L   + K  I D L 
Sbjct: 758 YKFICSNTIETRILNIQKHKLKIADNLF 785



 Score = 38.2 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 3/24 (12%), Positives = 11/24 (45%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVY 41
           E+I+ ++     ++  Q+    + 
Sbjct: 536 EDIQTYHILVLLLRLRQICCHPLL 559


>gi|167999325|ref|XP_001752368.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696763|gb|EDQ83101.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 729

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 23/194 (11%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           ++   I   + A   +K            E+         ++     I +  +    IV 
Sbjct: 527 VEDGKIVEGSKAELLLK------SEALEIEQGETLGTGLREVSESIKIEKVDSTEKAIVF 580

Query: 75  YHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPASCGHGL 123
             + S L  L+    +     +              + ++N   ++ ++     +   GL
Sbjct: 581 SQWTSMLDLLELPLKKSGLCYRRLDGTMSVVARDRAVSDFNTLPEVTVMIMSLKAASLGL 640

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           N+    + ++   +WW+        E   + R  + G  R V V     +NTI++ +L  
Sbjct: 641 NMVA-ASHVLLLDVWWNPTT-----EDQAIDRAHRIGQTRTVNVSRFTVKNTIEDRILAL 694

Query: 184 LRTKSTIQDLLLNA 197
              K  I       
Sbjct: 695 QERKRQIVASAFGE 708


>gi|322706469|gb|EFY98049.1| DNA repair protein RAD16 [Metarhizium anisopliae ARSEF 23]
          Length = 1086

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L  +     +   I+   F + L  ++                 T  +   +I+ + 
Sbjct: 920  VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEHFM 979

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 980  NNVDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 1033

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +  L  +++++  ++     K+ +    +NA  K
Sbjct: 1034 CTITRLCIEDSVESRMVLIQEKKTNMIHSTVNADDK 1069


>gi|297797715|ref|XP_002866742.1| hypothetical protein ARALYDRAFT_496925 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312577|gb|EFH43001.1| hypothetical protein ARALYDRAFT_496925 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 764

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---------------NAAPII 72
             V+  +  N      +    +         +E I+ +                N   ++
Sbjct: 489 LMVQLRKNCNHP----DLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVL 544

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  +   F               LD+    I+++++      +      + G
Sbjct: 545 IFSQWTKLLDIMDYYFSEKGFEVCRIDGNVKLDERRRQIKDFSDEKSSCSIFLLSTRAGG 604

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  + V VY L    +++  V
Sbjct: 605 LGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLSTAQSVETRV 658

Query: 181 LQRLRTKSTIQDLLLN 196
           L+R  +K  ++ +++ 
Sbjct: 659 LKRAYSKLKLEHVVIG 674


>gi|302792356|ref|XP_002977944.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
 gi|300154647|gb|EFJ21282.1| hypothetical protein SELMODRAFT_408 [Selaginella moellendorffii]
          Length = 835

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 23/162 (14%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKD 97
              KI AL  I++K      +   +V   F+S L   +    Q          G +  K 
Sbjct: 680 SSAKITALLSILDKTRAKDPSIKTVVFSQFSSMLKLAEAPLTQAGYKFVKLQGGMSAKKR 739

Query: 98  PCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              ++ +         +      + G GLNL    + +V    WW+        E   + 
Sbjct: 740 DEAMEAFKSRSKDSPTVFLLSLKAAGVGLNLVS-ASNVVMLDPWWNPAA-----EEQAMD 793

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G  R V V+ L+A ++I+E +LQ    K     + L 
Sbjct: 794 RVHRLGQTRDVHVFRLVATDSIEERLLQMQEKKRAYAQIALG 835


>gi|255713090|ref|XP_002552827.1| KLTH0D02354p [Lachancea thermotolerans]
 gi|238934207|emb|CAR22389.1| KLTH0D02354p [Lachancea thermotolerans]
          Length = 1047

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L   I +     ++V   F   L  L+                  ++     I ++ 
Sbjct: 876  LGKLLKDIIEHKKEKVLVFSLFTQMLDILEMALTTLNINFLRLDGSTQVNDRQALIDKFY 935

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +  IP+      + G G+NL    N ++ F   ++  +     ++    R  + G  + 
Sbjct: 936  EDESIPVFILSTKAGGFGINL-VCANHVIIFDQSFNPHD-----DKQAADRSHRVGQTKT 989

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V +  L+ +N+I+E +LQ  + K  +   +     K
Sbjct: 990  VHITTLVTRNSIEEKILQLAKNKLALDTYISEDDNK 1025


>gi|209945942|gb|ACI97202.1| okra [Drosophila simulans]
          Length = 168

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 76  MSIKKRSKVVDRFNDPESESFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 130

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y L+A  +I+E +LQR   K 
Sbjct: 131 QAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKK 168


>gi|221120099|ref|XP_002160992.1| PREDICTED: similar to predicted protein, partial [Hydra
            magnipapillata]
          Length = 1601

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 13/196 (6%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + F+++ Y D      +  N  S   K + L       +       V  + +  L +I  
Sbjct: 1382 NDFEKDWYDDFLIPEDQHNNELS--GKLILLCEILADAEVVGDKVLVFSQSLCTLNLIEA 1439

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGH 121
              +         +               ++ K     + +N+    +  L      +   
Sbjct: 1440 TLSDIQNDNLCKWCH--GVDYFRMDGSTSVQKRTRWAEIFNDPKNERCRLFLISTRAGSL 1497

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+N+  G N ++ F   W+     Q + R+      + G ++ V+VY  +AQ T++E + 
Sbjct: 1498 GINM-VGANRVIIFDCSWNPSHDVQSVFRV-----YRFGQEKPVYVYRFVAQGTMEEKIY 1551

Query: 182  QRLRTKSTIQDLLLNA 197
            +R  TK      +++ 
Sbjct: 1552 ERQITKLATAGRVVDE 1567


>gi|241948421|ref|XP_002416933.1| DNA repair protein RAD16-homologue, putative; RAD family
           ATP-dependent helicase, putative [Candida dubliniensis
           CD36]
 gi|223640271|emb|CAX44521.1| DNA repair protein RAD16-homologue, putative [Candida dubliniensis
           CD36]
          Length = 846

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  ++    +                +D          ++
Sbjct: 686 KLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEV 745

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 746 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 799

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+ +    +N
Sbjct: 800 FCIEDSIESKIIELQEKKANMIHATIN 826



 Score = 35.1 bits (79), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 5/98 (5%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +R+    +    +     N  +   +  QLA+      +      + +E    + 
Sbjct: 530 LYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRIGSNAISNEIDGVIM 589

Query: 61  VIIEKANAAPII---VAYHFNSDLARLQKAFPQGRTLD 95
             +    A   I     + F     +       G +  
Sbjct: 590 CQLCDDEAEEPIESKCHHRFCRMCIQEYMESFMGASNK 627


>gi|50866|emb|CAA49560.1| enhancer-trap-locus-1 [Mus musculus]
          Length = 1136

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 19/193 (9%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
               +   +          K  Q  N      +             +L  +  K     ++
Sbjct: 927  LIFEDMEVMTDFELHVLCKQYQHINSYQLDMDLILDSGKFRALGCSLSEL--KQKGDRVV 984

Query: 73   VAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGH 121
            +   F   L  L+      +             +    I E+N +  I +      + G 
Sbjct: 985  LFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGL 1044

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E +L
Sbjct: 1045 GINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESML 1098

Query: 182  QRLRTKSTIQDLL 194
            +  + K  ++  +
Sbjct: 1099 KINQQKLKLEQDM 1111


>gi|197261380|ref|YP_002154196.1| putative helicase [Pseudomonas phage LBL3]
 gi|197244470|emb|CAR31205.1| putative helicase [Pseudomonas phage LBL3]
          Length = 519

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
                LE ++E+     II+      ++ +++            +       +    I +
Sbjct: 360 VFTDLLEGLLEEDQERSIIIWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q  +R       + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLTA-ADVAIYYTTDEDNELRMQSEDR-----NHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQTSLEWKRNLASYVVDGV 508


>gi|171691859|ref|XP_001910854.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945878|emb|CAP72679.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1274

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 75/218 (34%), Gaps = 31/218 (14%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DE 54
            +  R ++   + +  E  + ++  ++  +       Y +    + +              
Sbjct: 800  QLIRSIFAQGKLKANERGSLSNILMQLRKCLCHPFIYSQAIEDRNLSPELTRRNLIEASS 859

Query: 55   KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
            K+  LE+++ K       +++   F   L  L+          +              I 
Sbjct: 860  KLMLLEIMLPKLKERGHRVLIFSQFLDQLTVLEDFLMSLNLRHERLDGSQSSLEKQKKID 919

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +N     +        + G G+NL    + ++     W+  +     +   ++R  + G
Sbjct: 920  AYNAPDSDIFCMLLSTRAGGVGINL-ATADTVIILDPDWNPHQ-----DIQALSRAHRIG 973

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             ++ V  + L+  ++ +E +LQ  R K  +  LL+  +
Sbjct: 974  QRKKVLCFQLVTVDSAEEKILQIGRKKMALDHLLIETM 1011


>gi|147818386|emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera]
          Length = 1249

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
             E +  LE I +       IV   + S L  L+            +       +    ++
Sbjct: 1084 SELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILK 1143

Query: 103  EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E++E +   +L     + G GLNL    + +     WW+    +Q I RI      + G 
Sbjct: 1144 EFSETEEKMVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI-----HRIGQ 1197

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +R V V   I ++T++E + Q    K  +    L   +  T  +
Sbjct: 1198 ERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARI 1241



 Score = 35.9 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 30/133 (22%), Gaps = 12/133 (9%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +     ++  Q  N           +       +    + + A            S+
Sbjct: 929  NYASILELLLRLRQCCNHPFLVMRCSXLRMCSRGDTQQYADLSKLARKFLENNPCSXTSN 988

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL---VFFSL 137
             +   +AF +          I+     + P+             L    +++      S 
Sbjct: 989  HSIPTRAFVEEVVGG-----IRRGENTECPICLES----ADDPVLTPCAHLMCRECLLSS 1039

Query: 138  WWDLEEHQQMIER 150
            W         I R
Sbjct: 1040 WRTPLSGLCPICR 1052


>gi|321471114|gb|EFX82087.1| hypothetical protein DAPPUDRAFT_101480 [Daphnia pulex]
          Length = 821

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 77/235 (32%), Gaps = 53/235 (22%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTV---KCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           +Y   +++   DL+ +  E+ N AS ++   K            +++     H  KI  L
Sbjct: 509 EYQAMKKQS--DLEDDLEESANPASSSLWWSKL---------IPDDEINNIEHSGKILLL 557

Query: 60  EVIIEKAN--AAPIIVAYH----------FNS------------------DLARLQKAFP 89
             I+         ++V             F +                   L        
Sbjct: 558 MEILRHCEVIGDKLLVFSQSLTSLDLIEEFLAAEHLKSSAGNASAVSGTWILDTDYFRLD 617

Query: 90  QGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +       +N+    ++ L      + G G+NL  G N ++ F   W+      
Sbjct: 618 GSTKSAERLKFCTAFNDPKNVRVRLFLISTKAGGIGINLT-GANRVIIFDSSWNPS---- 672

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  +  F+Y  +AQ T++E V  R   K  +   +++  + +
Sbjct: 673 -FDEQSVFRVYRLGQTKPCFIYRFVAQGTMEEKVYYRQVEKLALSRRIVDGQEMD 726


>gi|145491211|ref|XP_001431605.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398710|emb|CAK64207.1| unnamed protein product [Paramecium tetraurelia]
          Length = 654

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 68/196 (34%), Gaps = 28/196 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
            +K ++  ++      + E                  K++ L+  ++K       I++  
Sbjct: 411 MNKLMQLRKICLHPYLFPEVEDKSLPALGEHLVDVSGKMRVLDKFLQKLSEGQHQILIFS 470

Query: 76  HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
            F   L  L+                  +      I E+        +      + G G+
Sbjct: 471 QFTMMLNILEDYCNFRGYEYCRIDGETEIQSRDDQIAEFTAPDSKKFIFLLSTRAGGLGI 530

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++ +   ++ +     ++   + R  + G K  V VY +  ++T++E +++R
Sbjct: 531 NL-ATADTVIIYDSDFNPQ-----MDMQAMDRAHRIGQKSRVMVYRMACEHTVEEKIIER 584

Query: 184 LRTKSTIQDLLLNALK 199
            + K     L++   +
Sbjct: 585 QQIKLRWDSLMVQQGR 600


>gi|146422206|ref|XP_001487044.1| hypothetical protein PGUG_00421 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 497

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            F +              +++     + +N + KIP+      S G G+NL  G + ++F
Sbjct: 254 QFLNIHGYRYMRLDGATKIEERQVLTETFNRDPKIPVFILSTRSGGLGINLT-GADTVIF 312

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+       +++    R  + G  R V +Y  +++ TI+  +L++   K  + +++
Sbjct: 313 YDSDWNPA-----MDKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILKKANQKRHLDNVV 367

Query: 195 LNALK 199
           +   +
Sbjct: 368 IQEGE 372


>gi|313231397|emb|CBY08512.1| unnamed protein product [Oikopleura dioica]
          Length = 1201

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    +  K    I  +N+    +  L      +   G+NL      +V F   W+
Sbjct: 777 DYFRMDGATSGGKRHEFIGAFNDPLNMRSRLFIISTKAGCLGVNLVA-ATRVVIFDASWN 835

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   +   + R  + G  + VF+Y L+AQ T++E V +R   K  +   +L+ 
Sbjct: 836 PTH-----DIQSIFRVYRIGQTKPVFIYRLVAQGTMEEKVYRRQVQKQGLAQRVLDE 887


>gi|222619629|gb|EEE55761.1| hypothetical protein OsJ_04298 [Oryza sativa Japonica Group]
          Length = 1129

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 32/211 (15%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVII 63
           QRELY ++   N    NSA        + NG     +      +       K++ L  ++
Sbjct: 781 QRELYINILERNYSKLNSA--------IRNGLEVGQQATEDVFLSLIASSGKLQLLHKLL 832

Query: 64  E--KANAAPIIVAYHFNSDLARLQKAFPQ-GRTLDK---------DPCTIQEWN--EGKI 109
              K     +++       L  L+      G    +            +I+E+   + + 
Sbjct: 833 PRLKERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQESIEEYKNIDSET 892

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G++L  G + ++ +   ++       ++    +R  + G  R V VY 
Sbjct: 893 FIFLMSTRAGGMGVDL-PGADRVIIYDPDFNP-----FMDLQAQSRAHRIGQTRPVVVYQ 946

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LI + +++E +LQ+ + K  I+++L+N+ KK
Sbjct: 947 LITKCSVEEKILQKSKQKLAIENMLMNSSKK 977


>gi|162135084|ref|YP_001595825.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513931|emb|CAO77757.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 564

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 79/217 (36%), Gaps = 41/217 (18%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKIKALEVIIEKANAAPIIVAYH 76
           + A  + ++ ++  Q+  G +  D+E          + ++  L  +IE++    +IV   
Sbjct: 356 VIAALAITRLLRLQQITCGYLPTDDEAEPVYTIPGPNRRLDLLCDLIEESQH-KVIVWAR 414

Query: 77  FNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-------------------EG 107
           F  D+  +             +      D+       +                    E 
Sbjct: 415 FQMDITLIMDALRERGISAVRYDGLVNDDERAEAKARFQGERPLYHNGQVVGREAVPPEE 474

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTRQRQAGFKRAVF 166
           +  +   +PA+   GL L      ++++S  +      ++I+R     R  + G    V 
Sbjct: 475 QARVFVGNPAAGATGLTLTA-AKTVIYYSNSF------KLIDRLQSEDRAHRIGQTNNVL 527

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              L+A++++DE V++ LR K  +   +     K+ +
Sbjct: 528 YIDLVAEDSVDEKVVEALRNKFNVASQITGDRLKDWL 564


>gi|270003081|gb|EEZ99528.1| hypothetical protein TcasGA2_TC000110 [Tribolium castaneum]
          Length = 863

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 20/199 (10%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIV 73
           + E   A N A++ V   + + G +         E    KI+AL  +++         IV
Sbjct: 653 EEEPRVAANLANEGVGLKEASKGYLNPTNPVFMTERPSSKIRALINLLKNKISGEDKAIV 712

Query: 74  AYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGH 121
              + S L  +                   + K    +  +N+      +L     + G 
Sbjct: 713 VSQWTSLLHLVAIHLENEGIPYASLDGSVVVQKRMPIVDNFNDPNSATKVLLLSLTAGGV 772

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNL  G N L    L W+ +      E     R  + G K+ ++VY  +A  TI+E + 
Sbjct: 773 GLNL-VGANHLFLLDLHWNPQL-----ENQAQDRIYRMGQKKDIYVYKFMALETIEERIK 826

Query: 182 QRLRTKSTIQDLLLNALKK 200
                K  I + +L   K+
Sbjct: 827 ALQERKLEIANAMLTGSKQ 845



 Score = 41.7 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 5/48 (10%), Positives = 15/48 (31%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
           +Y K + +L    + + +         ++  Q+        +     E
Sbjct: 578 EYFKMRNKLLKLNRVKEVSQHEILVLLLRLRQICCHPSLIKQMLQGDE 625


>gi|258563128|ref|XP_002582309.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907816|gb|EEP82217.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 939

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 91  GRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               +K    + ++N               + G GLNL  G + LV F + W+       
Sbjct: 671 STPANKRQYLVDDFNRSSSSSCFAFLLSAKAGGIGLNLT-GASRLVLFDVDWNPAT---- 725

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   + R  + G KR   +Y ++ +  ++E + QR  TK  + D +++
Sbjct: 726 -DIQAMARIHRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKIGLADSVMD 773


>gi|197261472|ref|YP_002154287.1| putative helicase [Pseudomonas phage LMA2]
 gi|197244562|emb|CAR31296.1| putative helicase [Pseudomonas phage LMA2]
          Length = 538

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 81/215 (37%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAV--------YYDEEKHWKE 50
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +           E+     
Sbjct: 319 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 378

Query: 51  VHDEKIKALEV-------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
           V  + ++ L         II       I     +          +       +    I +
Sbjct: 379 VFTDLLEGLLEEDPERSIIIWAMRIQEIGQIAAYLETQGISFGTYYGDTKEAEREKLIDD 438

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q  +R       + G   
Sbjct: 439 FQAKRVQVFLGNPAAAGIGITLTA-ADVAIYYTTDEDNELRMQSEDR-----NHRIGTVN 492

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 493 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 527


>gi|170085497|ref|XP_001873972.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164651524|gb|EDR15764.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1754

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 77/235 (32%), Gaps = 49/235 (20%)

Query: 7    FQRELYCDLQGENIEAFNSASK---------------TVKCLQLANGAVYYDEEKHWKEV 51
             Q+E+Y  +   N+E     ++                +   +       Y E+   + +
Sbjct: 1107 LQKEVYRSILSHNLELLKGLTQPKFGGPTTKGRLNNILMHLRKCLQHPYLYAEDIEPRGL 1166

Query: 52   H-----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K++ L+ ++ K       +++   F   L  ++             
Sbjct: 1167 PPQETHEKLIDGSAKLRFLKALLPKLKARGHRVLLFSQFVIALNVIEDFLQGEGYKFLRL 1226

Query: 91   --GRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +    + E+N              + G G+NL Y  + ++ F   ++      
Sbjct: 1227 DGDTKGSERQKGMDEFNRPGSDYFVYLLTTRAGGVGINL-YTADTVIIFDPDFNPH---- 1281

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  + R  + G K+   V+ L+ +++ +E ++Q  + K  +  L++  +  +
Sbjct: 1282 ----QAIARAYRYGQKKTCLVFKLMVKDSAEERIMQIGKKKLVLDHLIVQKMDDD 1332


>gi|134080909|emb|CAK46426.1| unnamed protein product [Aspergillus niger]
          Length = 971

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 809 KLRSKKQTLKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQNSIEYFMNNVDV 868

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 869 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 922

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 923 LCIEDSVESRIVLLQEKKANLINGTINKDQGEALE 957


>gi|242061806|ref|XP_002452192.1| hypothetical protein SORBIDRAFT_04g021470 [Sorghum bicolor]
 gi|241932023|gb|EES05168.1| hypothetical protein SORBIDRAFT_04g021470 [Sorghum bicolor]
          Length = 1024

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 51   VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
            V   KI AL   +E  +++ A  IV   + + L  LQ    +               +  
Sbjct: 855  VESSKISALLQELEVLRSSGAKSIVFSQWTAFLDLLQIPLSRNNFSFARLDGTLNLQQRE 914

Query: 99   CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I+E+  +  I +L     + G G+NL    +       WW+       +E   V R  
Sbjct: 915  KVIKEFSEDKGILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPA-----VEEQAVMRIH 968

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G  + V +   I + T++E +      K  +    L   +  T  +
Sbjct: 969  RIGQTKTVSIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARI 1016



 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 43/193 (22%), Gaps = 27/193 (13%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    +     ++  Q  +           +E  D K K
Sbjct: 691 YEALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLK-K 749

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             +  +   N A    +    S                     +QE  +G+         
Sbjct: 750 LAKRFLRGGNGAVNGDSSCIPSRAYI--------------EEVVQELQKGEGECPIC--L 793

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  L    + L      S W         + R  +++Q              + +N
Sbjct: 794 EAFEDAVLTPCAHRLCRECLLSSWRSATAGLCPVCRKSMSKQDLITAPTDNRFQIDVEKN 853

Query: 175 TID-ELVLQRLRT 186
            ++   +   L+ 
Sbjct: 854 WVESSKISALLQE 866


>gi|225436357|ref|XP_002270070.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 1036

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
               D EK+W E        LE+    +  +  I+   + + L  LQ    +         
Sbjct: 858  FQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLD 917

Query: 94   ----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    I+++  E  I +L     + G G+NL    +       WW+    +Q +
Sbjct: 918  GTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTA-ASNAFVLDPWWNPAVEEQAV 976

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             RI      + G  + V +   I + T++E +L     K  +    L
Sbjct: 977  MRI-----HRIGQTKRVMIKRFIVKGTVEERMLAVQARKQRMISGAL 1018


>gi|159464126|ref|XP_001690293.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158284281|gb|EDP10031.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 116

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F +               ++    +Q +N + KI +      S G G+NL  G + ++F+
Sbjct: 8   FLNLHGHTYMRLDGATKPEQRQILMQRFNTDPKIFVFILSTRSGGVGINLT-GADTVIFY 66

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              W+       ++     R  + G  R V +Y L++ NTI+E +L++   K  +
Sbjct: 67  DSDWNPA-----MDAQAQDRCHRIGQTREVHIYRLVSTNTIEENILRKFNQKRQL 116


>gi|302819037|ref|XP_002991190.1| hypothetical protein SELMODRAFT_429547 [Selaginella moellendorffii]
 gi|300141018|gb|EFJ07734.1| hypothetical protein SELMODRAFT_429547 [Selaginella moellendorffii]
          Length = 959

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
             IV   + S L  L+    +            T+ +    + E+N   ++ ++     +
Sbjct: 806 KAIVFSQWTSMLDLLEPQLRKADLRFSRLDGTMTVVERDSAVTEFNTNPEVSVMIMSLKA 865

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   +WW+        E   + R  + G  R V V     +NTI++
Sbjct: 866 ASLGLNMVAACH-VLLLDVWWNPTT-----EDQAIDRAHRIGQTRPVHVSRFTVKNTIED 919

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  +       
Sbjct: 920 RILALQERKKQMVSSAFGE 938



 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/93 (8%), Positives = 22/93 (23%), Gaps = 5/93 (5%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-----KIKALEVIIE 64
           ++Y +         N     ++  Q  +  +   E  +     D      K+     +  
Sbjct: 614 QVYAEEGTLQSNYVNILYMLLRLRQACDHPLLVKETNNESTEFDAVENVKKLALERRVEL 673

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           +             +D+         G    + 
Sbjct: 674 QNTLDRNKSICTICADVPEWAVISWCGHVFCRQ 706


>gi|327273061|ref|XP_003221301.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Anolis carolinensis]
          Length = 1106

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 21/197 (10%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAY 75
            E++         + C Q AN  ++  + +    +   K + L  I+ +       +++  
Sbjct: 900  EDMSVMTDYELHLLCKQYAN--IHDFKLEMDLILDSGKFRTLIHILSEFKEKGNRVVLFS 957

Query: 76   HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
             F   L  L+      +                  I E+N +  I +      + G G+N
Sbjct: 958  QFTMMLDILEVLLKHEQHRYLRLDGKTQIADRIHLIDEFNSDMGIFIFLLSTKAGGLGIN 1017

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    N+++   +  +        ++    R  + G  R V V  LI++ TI+E +L+  
Sbjct: 1018 LTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTREVKVIRLISKGTIEESMLKIS 1071

Query: 185  RTKSTIQDLLLNALKKE 201
            + K  ++  +  A   E
Sbjct: 1072 QQKLKLEQDMTAADAGE 1088


>gi|212539075|ref|XP_002149693.1| alpha-1,6-mannosyltransferase subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210069435|gb|EEA23526.1| alpha-1,6-mannosyltransferase subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1874

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 17/163 (10%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPC 99
            +  +    +  +  + +    +V   +   L                F       +   
Sbjct: 823 GLPSKVASLVRQLKAQPSDVKSVVFSTWRMSLDVVESGLKQAQIPCLRFDGKVPQKERKS 882

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I ++  +  + +L    +    GL L    +        W+       +E   + R  +
Sbjct: 883 VIDKFKHDPSVSVLLLTLSCGAVGLTLTE-ASCAYLMEPHWNPT-----VEEQALARIHR 936

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+ V       ++T +E V++  R+K  +   L ++   +
Sbjct: 937 LGQKKEVTTVRFYIKDTFEERVMELQRSKDELAGTLFSSENAQ 979


>gi|145357178|ref|XP_001422798.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583042|gb|ABP01157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 806

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 60  EVIIEKANAA--PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NE 106
             +  + N      IV   + + +  ++    +             + +    +Q +  +
Sbjct: 643 RDMRNQENGHLNKAIVFSQYTAMIEIVEWRLKKAKFTIAKLLGSMPVTQRAANLQAFRED 702

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + ++     S G GLNLQ   N +     WW+            V R  + G  R V 
Sbjct: 703 PNVSVILMSLKSGGEGLNLQA-ANYVYVLEPWWNPAVEM-----QAVMRAHRIGQLRPVT 756

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 + TI+E +++    K  + +  ++ 
Sbjct: 757 AVRFSTKGTIEERMMELQEKKQLVFEGCMDG 787


>gi|171693995|ref|XP_001911922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946946|emb|CAP73750.1| unnamed protein product [Podospora anserina S mat+]
          Length = 957

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
           +  L  +     +   I+   F + L  ++                 T  +   +I  + 
Sbjct: 791 VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIHHFM 850

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 851 TNPDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 904

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +  L  +++++  ++     K+ + +  +N+
Sbjct: 905 CTITRLCIEDSVESRMVLLQEKKTNMINSTINS 937


>gi|302819164|ref|XP_002991253.1| hypothetical protein SELMODRAFT_429604 [Selaginella moellendorffii]
 gi|300140964|gb|EFJ07681.1| hypothetical protein SELMODRAFT_429604 [Selaginella moellendorffii]
          Length = 959

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
             IV   + S L  L+    +            T+ +    + E+N   ++ ++     +
Sbjct: 806 KAIVFSQWTSMLDLLEPQLRKADLRFSRLDGTMTVVERDSAVTEFNTNPEVSVMIMSLKA 865

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+    + ++   +WW+        E   + R  + G  R V V     +NTI++
Sbjct: 866 ASLGLNMVAACH-VLLLDVWWNPTT-----EDQAIDRAHRIGQTRPVHVSRFTVKNTIED 919

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  +       
Sbjct: 920 RILALQERKKQMVSSAFGE 938



 Score = 35.5 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/93 (8%), Positives = 22/93 (23%), Gaps = 5/93 (5%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-----KIKALEVIIE 64
           ++Y +         N     ++  Q  +  +   E  +     D      K+     +  
Sbjct: 614 QVYAEEGTLQSNYVNILYMLLRLRQACDHPLLVKETNNESTEFDAVENVKKLALERRVEL 673

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           +             +D+         G    + 
Sbjct: 674 QNTLDRNKSICTICADVPEWAVISWCGHVFCRQ 706


>gi|254572878|ref|XP_002493548.1| Swi2/Snf2-related ATPase that is the structural component of the SWR1
            complex [Pichia pastoris GS115]
 gi|238033347|emb|CAY71369.1| Swi2/Snf2-related ATPase that is the structural component of the SWR1
            complex [Pichia pastoris GS115]
 gi|328354627|emb|CCA41024.1| helicase SWR1 [Pichia pastoris CBS 7435]
          Length = 1583

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 69/178 (38%), Gaps = 19/178 (10%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR------- 83
             QL         +K   +    K++ L  ++ +  +N    ++       L         
Sbjct: 1281 HQLQTKLSIAFPDKSLLQYDCGKLQKLASLLLELKSNGHRALIFTQMTKVLDILEQFLNI 1340

Query: 84   --LQKAFPQGRTLDKDPCTI-QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               +     G T  +D   + + +N + +I        S G G+NL  G + ++F+   W
Sbjct: 1341 QGYRYMRLDGATKIEDRQVLTERFNKDDRITCFILSTRSGGLGINLT-GADTVIFYDSDW 1399

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +       +++    R  + G  R V +Y  +++ TI+  +L++   K  + ++++  
Sbjct: 1400 NPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILKKANQKRQLDNVIIQE 1452


>gi|212535616|ref|XP_002147964.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210070363|gb|EEA24453.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 939

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 24/171 (14%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKD 97
              KIKAL  I+    +A     +V   + S L  ++                  +  +D
Sbjct: 752 PSSKIKALIKILTAKGQAEQTKTVVFSQWTSFLDIIEPHLTANDVRFTRIDGKLNSNKRD 811

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +  N+ K  +L A    C  GLNL    N ++    WW        IE   + R  
Sbjct: 812 QAIAEFSNDPKCKVLLASLNVCSVGLNLVA-ANQVILCDSWWAPA-----IEDQAIDRVY 865

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKETIH 204
           + G  R   V+ L+ + ++++ VL+    K  +    L    +  K E+  
Sbjct: 866 RLGQTRETMVWRLVMEGSVEDNVLKIQAAKRELSSTALSERTDKKKGESTQ 916



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 9/54 (16%)

Query: 1   MKQYHKFQRELYCDLQG---------ENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +K+Y  FQ E    L                 +     ++  Q+ N        
Sbjct: 588 LKKYEMFQNEARGMLDKYKHQVSGPNGATTYSHVLEVLLRLRQVCNHWSLCKNR 641


>gi|169624246|ref|XP_001805529.1| hypothetical protein SNOG_15379 [Phaeosphaeria nodorum SN15]
 gi|111056192|gb|EAT77312.1| hypothetical protein SNOG_15379 [Phaeosphaeria nodorum SN15]
          Length = 1058

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
             +  K      IV   F S L  ++    +                +            +
Sbjct: 897  KLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAMRQKSIDHFMTNPDV 956

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G  LNL    + +     WW+     Q  +R       + G KR   +  
Sbjct: 957  EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQKRPCVITR 1010

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L  +++++  ++     K+ +    +N  K
Sbjct: 1011 LCIEDSVESRMVALQEKKAAMIAGTVNNDK 1040


>gi|73997422|ref|XP_867833.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
            isoform 13 [Canis familiaris]
          Length = 1918

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 64/240 (26%), Gaps = 52/240 (21%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            K Y       +  L         +  +  +   +  N    +             +    
Sbjct: 972  KYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGS 1031

Query: 61   VIIE---------------KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
             +I                K     +++       L  L+               G T +
Sbjct: 1032 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1091

Query: 96   KDPCTIQEWN-EGKIPL-------------------LFAHPASCGHGLNLQYGGNILVFF 135
                 I  +N +G+                            + G G+NL    + ++ +
Sbjct: 1092 MRQEAIDRFNGKGRSRFHAGSPTWDSIQAPGAQQFCFLLSTRAGGLGINL-ATADTVIIY 1150

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+        +    +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1151 DSDWNP-----HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1205


>gi|296807704|ref|XP_002844237.1| Fun30p [Arthroderma otae CBS 113480]
 gi|238843720|gb|EEQ33382.1| Fun30p [Arthroderma otae CBS 113480]
          Length = 1138

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
            K+ + +   K+  L  ++     N   I++   F                         +
Sbjct: 946  KNKEWMMSGKVDKLCELLTNFIANGDRILIFSQFTMVMDILEQVLETQNIKFFRLDGTTS 1005

Query: 94   LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++     +  ++E   IP+      + G G+NL    N ++ F   ++ +      +   
Sbjct: 1006 VEDRQSILDAFHEQVDIPVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 1059

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 1060 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 1101


>gi|307180292|gb|EFN68325.1| Lymphoid-specific helicase [Camponotus floridanus]
          Length = 773

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 65/186 (34%), Gaps = 28/186 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIEKAN--AAPIIVAYHFNSDL 81
            ++ N             +            K+  L+ ++ K +     +++       L
Sbjct: 533 KKIVNHPYLVHCPLDSVGLPKIDNDLIRSSGKLLVLDAMLAKLHARGHKVLLFSTMTMIL 592

Query: 82  ARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
             ++               + +  ++        N+  + L      + G GLNL    +
Sbjct: 593 DMIEDYLSLRDYNYVRLDGRIKIEERKENIKTFNNDPNVFLFLISTRAGGVGLNL-ASAD 651

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +      +   + R  + G  + V VY L  + T+DE +++R   K  +
Sbjct: 652 TVIIYDSDWNPQA-----DIQAMARCHRIGQTKPVVVYRLCTRGTVDETIIKRSEAKRIL 706

Query: 191 QDLLLN 196
           + ++++
Sbjct: 707 EKVVIS 712


>gi|297830680|ref|XP_002883222.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329062|gb|EFH59481.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1046

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
              I+   +   L  ++    +     +                +      + ++     +
Sbjct: 893  KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKNPDVKVMLMSLKA 952

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    + ++   LWW+        E   + R  + G  R V V  +  ++T+++
Sbjct: 953  GNLGLNMVAACH-VILLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVTRITIKDTVED 1006

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +L     K T+       
Sbjct: 1007 RILTLQEDKRTMVASAFGE 1025


>gi|19075201|ref|NP_587701.1| Rad16 homolog Rhp16 [Schizosaccharomyces pombe 972h-]
 gi|3647341|emb|CAA21065.1| Rad16 homolog Rhp16 [Schizosaccharomyces pombe]
          Length = 963

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  +     +          G T      TI+ + N+  I +      +
Sbjct: 812 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 871

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G KR + V  L  +N+I+ 
Sbjct: 872 GGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI-----HRIGQKRPIKVITLCIENSIES 925

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    ++  +K    +
Sbjct: 926 KIIELQEKKAQMIHATIDQDEKALNQL 952


>gi|323456317|gb|EGB12184.1| hypothetical protein AURANDRAFT_19973 [Aureococcus anophagefferens]
          Length = 216

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I++++     + F    + G G+NL      ++ F + W+  +     +   + R 
Sbjct: 129 RQALIEDFSSSDAVVFFLSVRAAGVGINLHA-ATRVILFDVSWNPAD-----DAQAIARA 182

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + G +R VFVY L+A  T++E V  R   K
Sbjct: 183 HRFGQERPVFVYRLVAAGTVEERVFNRQIAK 213


>gi|55959598|emb|CAI12731.1| transcription termination factor, RNA polymerase II [Homo sapiens]
          Length = 143

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    ++ +N  +   ++     + G GLNL  GGN L    + W+     Q  +RI 
Sbjct: 26  PKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT-GGNHLFLLDMHWNPSLEDQACDRI- 83

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 84  ----YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG 124


>gi|149408270|ref|YP_001294549.1| hypothetical protein ORF041 [Pseudomonas phage M6]
          Length = 564

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 79/217 (36%), Gaps = 41/217 (18%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWK---EVHDEKIKALEVIIEKANAAPIIVAYH 76
           + A  + ++ ++  Q+  G +  D+E          + ++  L  +IE++    +IV   
Sbjct: 356 VIAALAITRLLRLQQITCGYLPTDDEAEPVYTIPGPNRRLDLLCELIEESQH-KVIVWAR 414

Query: 77  FNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-------------------EG 107
           F  D+  +             +      D+       +                    E 
Sbjct: 415 FQMDITLIMDALRERGISAVRYDGLVNDDERADAKARFQGERPLYHNGQVVGREAVPPEE 474

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTRQRQAGFKRAVF 166
           +  +   +PA+   GL L      ++++S  +      ++I+R     R  + G    V 
Sbjct: 475 QARVFVGNPAAGATGLTLTA-AKTVIYYSNSF------KLIDRLQSEDRAHRIGQTNNVL 527

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              L+A++++DE V++ LR K  +   +     K+ +
Sbjct: 528 YIDLVAEDSVDEKVVEALRNKFNVASQITGDRLKDWL 564


>gi|147857221|emb|CAN79218.1| hypothetical protein VITISV_012795 [Vitis vinifera]
          Length = 874

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
            H  K++ALE ++    ++   I++  +    L  L+K   +                  
Sbjct: 515 KHCGKMRALEKLMLSWVSHGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQ 574

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N      +      + G GLNL    N +V F   W+  +     +     R  
Sbjct: 575 SLVDDFNSSPSKQVFLISTRAGGLGLNLVS-ANRVVIFDPNWNPAQ-----DLQAQDRSF 628

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR V V+ L+A  +++ELV  R   K  + ++ ++ 
Sbjct: 629 RYGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAISG 668


>gi|299751451|ref|XP_001830276.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
 gi|298409380|gb|EAU91423.2| hypothetical protein CC1G_01912 [Coprinopsis cinerea okayama7#130]
          Length = 1032

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 6/99 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           E    ++     +   GLNL    N +     WW     Q+ IE   V R  + G K+ V
Sbjct: 905 ESNPRVMLISLKAGALGLNLT-VANHVYLMDPWW-----QEGIESQAVDRVNRIGQKKPV 958

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            VY LIA+NT++  VL+    K  +     + +K     
Sbjct: 959 HVYQLIAENTVESKVLEIQDRKKQLVKQAFSGIKSRETQ 997



 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/109 (8%), Positives = 25/109 (22%), Gaps = 20/109 (18%)

Query: 2   KQYHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y + +      ++             N  S   +  Q+A        +   +    E 
Sbjct: 726 RIYDQIEEISQQRIEKMMSSFAPAFVQSNVLSMLTRLRQIALHPGLVPGQYLEQLRAAEA 785

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
            + +     +A   P +                    +  +    I  +
Sbjct: 786 AEGMVGETLEAEGIPYVRF--------------DGQMSAKRRQEAIARF 820


>gi|238879242|gb|EEQ42880.1| DNA repair protein RAD16 [Candida albicans WO-1]
          Length = 852

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  +Q    +                +D          ++
Sbjct: 692 KLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEV 751

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 752 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 805

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+ +    +N
Sbjct: 806 FCIEDSIESKIIELQEKKANMIHATIN 832



 Score = 34.7 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 5/98 (5%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +R+    +    +     N  +   +  QLA+      +      + +E    + 
Sbjct: 536 LYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGVIM 595

Query: 61  VIIEKANAAPII---VAYHFNSDLARLQKAFPQGRTLD 95
             +    A   I     + F     +       G +  
Sbjct: 596 CQLCDDEAEEPIESKCHHRFCRMCIQEYMESFMGASNK 633


>gi|9629985|ref|NP_046203.1| global transactivator [Orgyia pseudotsugata MNPV]
 gi|2493353|sp|O10302|GTA_NPVOP RecName: Full=Probable global transactivator; AltName:
           Full=ATP-dependent helicase GTA
 gi|7514943|pir||T10316 global transactivator - Orgyia pseudotsugata nuclear polyhedrosis
           virus
 gi|1911293|gb|AAC59046.1| global transactivator [Orgyia pseudotsugata MNPV]
          Length = 498

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKE----- 50
           + Y++ +             A  +           +  Q+            + E     
Sbjct: 264 RVYNELKSASQRAYDDAVASADKAGGMQDVLWLLCRLRQVCCHPALTKCAAMFPEHAHIF 323

Query: 51  ---VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
                  K +    +++         +++   +   L  +     +              
Sbjct: 324 EPAYESSKCRRALELVQRVLDTPDDKVVLVSQWVEFLQLVAGLLRRRGVPILLYTGQLRV 383

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++      ++N  +    +L       G GLNL  GGN ++     W+ +     IE   
Sbjct: 384 EERTAVENQFNAADSPYRVLLMSIKCGGVGLNLT-GGNHIIMLEPHWNPQ-----IELQA 437

Query: 153 VTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+  +VY +I   +N+I+  +  R   K T  + + +
Sbjct: 438 QDRIHRMGQKKRTYVYKMIVDEENSIERYMKARQDKKLTFVNKVFD 483


>gi|242786879|ref|XP_002480891.1| DNA excision repair protein (Rad26L), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721038|gb|EED20457.1| DNA excision repair protein (Rad26L), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1052

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRT 93
              + +     K+    +    AN   ++V  H    L  LQ  F              +
Sbjct: 616 NYANPEFCGKWKVLRKLLKWWHANGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGAMS 675

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +     + E+N + +  +      + G GLN+    N +V     W+        +   
Sbjct: 676 YEDRAKAVDEFNSDPQQFVFLISTRAGGVGLNIVS-ANKVVVVDPNWNPSH-----DLQA 729

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G  R V V+ LI+  TI+E+V  R   K    +
Sbjct: 730 QDRAYRIGQHRDVEVFRLISAGTIEEIVYARQIYKQQQAN 769


>gi|68468819|ref|XP_721468.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
 gi|68469363|ref|XP_721196.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443104|gb|EAL02388.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443387|gb|EAL02669.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
          Length = 852

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  +Q    +                +D          ++
Sbjct: 692 KLRSDRHTIKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEV 751

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 752 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 805

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+ +    +N
Sbjct: 806 FCIEDSIESKIIELQEKKANMIHATIN 832



 Score = 34.7 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 5/98 (5%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +R+    +    +     N  +   +  QLA+      +      + +E    + 
Sbjct: 536 LYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGVIM 595

Query: 61  VIIEKANAAPII---VAYHFNSDLARLQKAFPQGRTLD 95
             +    A   I     + F     +       G +  
Sbjct: 596 CQLCDDEAEEPIESKCHHRFCRMCIQEYMESFMGASNK 633


>gi|145512521|ref|XP_001442177.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409449|emb|CAK74780.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1014

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 73/196 (37%), Gaps = 28/196 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIKALEVIIEKANA--APIIVAY 75
            +K ++  ++      + E +                K++ L++ ++K +     +++  
Sbjct: 411 MNKLMQLRKICLHPYLFPEVEDKSLPPLGEHLVEVAGKMRVLDIFLKKLSDGTHQVLIFS 470

Query: 76  HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
            F   L  L+      +             +    I E+ +      +      + G G+
Sbjct: 471 QFTMMLNILEDYCNYRKYDYCRIDGETEIQQRDDQIAEFTKPDSKKFIFLLSTRAGGLGI 530

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++ +   ++ +     ++   + R  + G K  V VY +  ++TI+E +++R
Sbjct: 531 NL-ATADTVIIYDSDFNPQ-----MDMQAMDRAHRIGQKNRVMVYRMACEHTIEEKIIER 584

Query: 184 LRTKSTIQDLLLNALK 199
            + K     L++   +
Sbjct: 585 QQIKLRWDSLMIQQGR 600


>gi|326681197|ref|XP_003201743.1| PREDICTED: transcription activator BRG1-like, partial [Danio rerio]
          Length = 771

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   Q +      G   +   S S+ +       G      +         K + L+ I
Sbjct: 315 LYRHMQAKGVLLTDGSEKDKKESFSEHL-------GFSGGIVQGLDLYRASGKFEVLDRI 367

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP 110
           + K  A    +++     S +  ++  F                      ++ +N+    
Sbjct: 368 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPASQ 427

Query: 111 --LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNLQ   + ++ F   W+  +     +     R  + G    V V 
Sbjct: 428 YFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHRIGQLNEVRVL 481

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L   N+++E +L   + K  +   ++ A
Sbjct: 482 RLCTVNSVEEKILAAAKYKLNVDQKVIQA 510


>gi|302845062|ref|XP_002954070.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
 gi|300260569|gb|EFJ44787.1| hypothetical protein VOLCADRAFT_40456 [Volvox carteri f.
           nagariensis]
          Length = 520

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 59/226 (26%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------------------------- 52
                S      +L N      +  H +                                
Sbjct: 301 TSGVLSAITSLKKLCNHPKLIYDAVHRRFSPGHVRSCSCLSDVGSLFPPGLFDNGRVGRG 360

Query: 53  ---------DEKIK---ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------- 90
                      K+     +  ++       I++  ++ S L    +   +          
Sbjct: 361 GMAAGWETLSGKMAVLARMLHVLYTETHDRIVLVSNYTSSLDLFAQLCRERGYPFVRLDG 420

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             T++K    ++ +N+             + G GLNL  G N LV F   W+    Q   
Sbjct: 421 TTTINKRQKLVKVFNDPAERQFAFLLSSKAGGCGLNL-IGANRLVLFDPDWNPANDQ--- 476

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 R  + G ++ VFVY  ++  +I+E V QR  +K  ++ L+
Sbjct: 477 --QAAARVWRDGQRKRVFVYRFLSTGSIEEKVYQRQLSKEGLKQLV 520


>gi|212529714|ref|XP_002145014.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Penicillium marneffei ATCC 18224]
 gi|210074412|gb|EEA28499.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Penicillium marneffei ATCC 18224]
          Length = 900

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 61/201 (30%), Gaps = 30/201 (14%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------HDEKIKALEVIIEK- 65
            E     +  +  ++  ++    +  D  +   +              K  ALE +++  
Sbjct: 379 SEKGSGRSVTNVLMELRKICVHPLLVDTMERGNDDADAMIRELVHTSSKFIALERLLDHE 438

Query: 66  --ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
              N   +++   F           ++      +         +     +   + K  + 
Sbjct: 439 VIQNNKKMLIFAGFDYALDCCQSLLHAMNISHLRLDGNTPYAMRKLNVHRFQKQDKHRVF 498

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G  + L     ++VF    W+       I      R  + G  +AV V  L  
Sbjct: 499 VIAMRAGGEDITLTS-AEVIVFMDFDWNPS-----IMAQAEARAHRIGQTKAVTVVKLCT 552

Query: 173 QNTIDELVLQRLRTKSTIQDL 193
           + T++  +L+RL  K  +   
Sbjct: 553 RGTVESQMLERLNNKLYLASK 573


>gi|84995999|ref|XP_952721.1| DNA repair helicase [Theileria annulata strain Ankara]
 gi|65303718|emb|CAI76095.1| DNA repair helicase, putative [Theileria annulata]
          Length = 965

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 21/159 (13%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF------------PQGRTLDKDP 98
             K+     II   K     I++     + L  +                    T+    
Sbjct: 638 SSKLNVSLKIIEMWKKENKKILLFTQTTTMLNIIYDHLLEIYDKDEILILFGKHTVSNRN 697

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +  + K+ ++       G GLNL      ++ +   W+              R  
Sbjct: 698 KIIERFSTDDKVFIMILTTKVGGIGLNLTA-ATRIIIYDPDWNPMTDM-----QAKERCY 751

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G K  V +Y LI  +TI+E + QR   K  +   +L+
Sbjct: 752 RIGQKNEVIIYRLITASTIEEKIYQRQLYKYYLSQQILS 790


>gi|242033923|ref|XP_002464356.1| hypothetical protein SORBIDRAFT_01g016830 [Sorghum bicolor]
 gi|241918210|gb|EER91354.1| hypothetical protein SORBIDRAFT_01g016830 [Sorghum bicolor]
          Length = 888

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC 99
           H  K++ALE ++         I++  +    L  L+K           F     ++    
Sbjct: 530 HCGKMRALERLLSLWTQQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQS 589

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N      +      +   G+NL    N +V F   W+  +     +     R  +
Sbjct: 590 LVDEFNRSPSKQVFLISTRAGNLGVNLVS-ANRVVIFDPSWNPAQ-----DLQAQDRSFR 643

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +R V V+ L+   +++EL+  R   K  + ++ ++ 
Sbjct: 644 YGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSG 682


>gi|242038313|ref|XP_002466551.1| hypothetical protein SORBIDRAFT_01g009790 [Sorghum bicolor]
 gi|241920405|gb|EER93549.1| hypothetical protein SORBIDRAFT_01g009790 [Sorghum bicolor]
          Length = 836

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 68/193 (35%), Gaps = 29/193 (15%)

Query: 27  SKTVKCLQLANGA-----------VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           S  ++  +                +Y    K  ++    ++    +    A    +++  
Sbjct: 560 SLCIQLRKNCAHPDLLEAAFGTTSLYPPVNKLLEQCGKFQLLDRLLTSLLARKHKVLIFS 619

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGL 123
            +   L  L+                  L++    I E+N+    + +      + G G+
Sbjct: 620 QWTKVLDILEYYLDSKGLGVCRIDGSVNLEERRRQIAEFNDVNSSLNVFILSTRAGGLGI 679

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++E +++R
Sbjct: 680 NLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEERIIKR 733

Query: 184 LRTKSTIQDLLLN 196
              K  ++ +++ 
Sbjct: 734 AFGKLKLEHVVIG 746


>gi|115446443|ref|NP_001047001.1| Os02g0527100 [Oryza sativa Japonica Group]
 gi|49388292|dbj|BAD25407.1| putative DNA repair protein rad8 [Oryza sativa Japonica Group]
 gi|113536532|dbj|BAF08915.1| Os02g0527100 [Oryza sativa Japonica Group]
          Length = 810

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 51  VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDP 98
           V   KI  L   +E  + + A  I+   + + L  LQ    +               +  
Sbjct: 641 VESSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLDGTLNLQQRE 700

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+E+  +  I +L     + G G+NL    +       WW+    +Q I RI      
Sbjct: 701 KVIKEFSEDKSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAIMRI-----H 754

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G  ++V +   I + T++E +      K  +    L
Sbjct: 755 RIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGAL 792



 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/193 (7%), Positives = 43/193 (22%), Gaps = 28/193 (14%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    +     ++  Q  +           +E  D    
Sbjct: 478 YDALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVLSRGDTQEFADLNKL 537

Query: 58  ALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           A   +       N    + +  +  ++ +  +       +      ++ + +        
Sbjct: 538 AKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKGEGECPI-----CLEAFED-----AVL 587

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            P +                 S W         + R  +++Q              + +N
Sbjct: 588 TPCAHRLCRE--------CLLSSWRSASAGLCPVCRKSMSKQDLITAPTDNRFQIDVEKN 639

Query: 175 TID-ELVLQRLRT 186
            ++   +   L+ 
Sbjct: 640 WVESSKISFLLQE 652


>gi|225446400|ref|XP_002274640.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|302143309|emb|CBI21870.3| unnamed protein product [Vitis vinifera]
          Length = 874

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
            H  K++ALE ++    ++   I++  +    L  L+K   +                  
Sbjct: 515 KHCGKMRALEKLMLSWVSHGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQ 574

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N      +      + G GLNL    N +V F   W+  +     +     R  
Sbjct: 575 SLVDDFNSSPSKQVFLISTRAGGLGLNLVS-ANRVVIFDPNWNPAQ-----DLQAQDRSF 628

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR V V+ L+A  +++ELV  R   K  + ++ ++ 
Sbjct: 629 RYGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAISG 668


>gi|225436359|ref|XP_002270098.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 1016

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
              D EK+W E        LE+    +  +  I+   + + L  LQ    +         
Sbjct: 838 FQIDVEKNWMESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLD 897

Query: 94  ----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +    I+++  E  I +L     + G G+NL    +       WW+       +
Sbjct: 898 GTLNQQQREKVIKQFSEESNILVLLMSLKAGGVGINLTA-ASNAFVLDPWWNPA-----V 951

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           E   V R  + G  + V +   I + T++E +L     K  +    L
Sbjct: 952 EEQAVMRIHRIGQTKRVMIKRFIVKGTVEERMLAVQARKQRMISGAL 998


>gi|198453636|ref|XP_001359276.2| GA18064 [Drosophila pseudoobscura pseudoobscura]
 gi|198132447|gb|EAL28421.2| GA18064 [Drosophila pseudoobscura pseudoobscura]
          Length = 1958

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 45/219 (20%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------------HDEKIKALEVIIE 64
               +          + N       +                      H  K+ AL+ ++ 
Sbjct: 1676 NKTHIFQALRYLQNVCNHPKLVLRQSEELSHVSAQLALSNSCLDDIEHSAKLPALKQLLL 1735

Query: 65   KA---------NAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQ 102
                       +    ++     + L  ++                       +    + 
Sbjct: 1736 DCGIGVQTESVSQHRALIFCQLKAMLDIVEHDLLRRHLPSVTYLRLDGSVPASQRQDIVN 1795

Query: 103  EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +N +  I +L       G GLNL  G + ++F    W+      M +   + R  + G 
Sbjct: 1796 NFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIFVEHDWNP-----MKDLQAMDRAHRIGQ 1849

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            K+ V VY LI +N+++E ++   + K    + +++A   
Sbjct: 1850 KKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENA 1888


>gi|312384392|gb|EFR29129.1| hypothetical protein AND_02166 [Anopheles darlingi]
          Length = 2232

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 68/201 (33%), Gaps = 20/201 (9%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANG-------AVYYDEEKHWKEVHDEKIKALEV 61
            RE   +   E++   N      + L+  N           +    +  E    KI   + 
Sbjct: 1124 REYLGEADLESLVPSNKLWIMFEILKQCNDRGEKCLIFSAFVAVLNVVEHFMAKINEQQN 1183

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--DPCTIQEWNEGK---IPLLFAHP 116
                   A       F       +  +      +K      I+ +N+ +   +       
Sbjct: 1184 --HDLPHADAFGYSAFKGPWVAGKDYYRLDGKTNKSIRHDLIRSFNDPRNTRVKCFLISA 1241

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+NL    N ++     W+    QQ I RI      + G KR  +VY L+A  T+
Sbjct: 1242 KAGGQGINLTA-ANRVIILDTSWNPSNDQQNIFRI-----FRLGQKRKCYVYRLLAMGTM 1295

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E V  R  TK  +   +++ 
Sbjct: 1296 EEKVYSRSVTKQALSFRVVDE 1316


>gi|145522560|ref|XP_001447124.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414624|emb|CAK79727.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1013

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEE--------KHWKEVHDEKIKALEVIIEK--ANAAPIIVAY 75
            +K ++  ++      + +                  K++ L+  ++K       I++  
Sbjct: 411 MNKLMQLRKICLHPYLFPDVEDKSLPALGEHLVDVSGKMRVLDKFLKKLSEGQHQILIFS 470

Query: 76  HFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
            F S L  L+                  + +    I E+        +      + G G+
Sbjct: 471 QFTSMLNILEDYCNFRGFLYCRIDGETEIQQRDDQIAEFTSPNSKKFIFLLSTRAGGLGI 530

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++ +   ++ +     ++   + R  + G K  V VY +  ++T++E +++R
Sbjct: 531 NL-ATADTVIIYDSDFNPQ-----MDMQAMDRAHRIGQKNRVMVYRMACEHTVEEKIIER 584

Query: 184 LRTKSTIQDLLLNALK 199
            + K     L++   +
Sbjct: 585 QQIKLRWDSLMIQQGR 600


>gi|209945932|gb|ACI97197.1| okra [Drosophila yakuba]
          Length = 168

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 76  MSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 130

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y ++A  +I+E +LQR   K 
Sbjct: 131 QAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKK 168


>gi|147790062|emb|CAN75984.1| hypothetical protein VITISV_012188 [Vitis vinifera]
          Length = 399

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K + L+ ++ K       +++       +  L+                   ++    
Sbjct: 5   SGKFELLDRLLPKLQKAGHRVLLFSQMTRLMDILEIYLQMNEIKYLRLDGSTKTEERGTK 64

Query: 101 IQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++++N    P         + G GLNLQ   + ++ F   W+ +     +++    R  +
Sbjct: 65  LKQFNAPDSPYFMFLLSTRAGGLGLNLQT-ADTVIIFDSDWNPQ-----MDQQAEDRAHR 118

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V+ L++  +I+E++L+R + K  I   ++ A
Sbjct: 119 IGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQA 157


>gi|238880563|gb|EEQ44201.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 864

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 68/189 (35%), Gaps = 26/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           K ++   + N    Y       +     +  K + L  ++    ++   +++   F   L
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVL 640

Query: 82  ARLQKAFPQGR--------------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             L+    +                   +D    Q  N  K  +      + G G+NL  
Sbjct: 641 DLLEDWLEESPLLHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLLSTRAGGLGINLVA 700

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++     W+ +     ++   + R  + G    V ++  + +++I+E+++ R  +K
Sbjct: 701 -ADTVILMDNDWNPQ-----MDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 755 RFLERLVIQ 763


>gi|316972508|gb|EFV56185.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 1052

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 67/250 (26%), Gaps = 71/250 (28%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE---------------- 60
                +        ++  Q         E      +  ++ +                   
Sbjct: 772  SGEKQRMQIIVMLLRLRQACCHFALTKEAVDIDALCMDREEHDLSERLQEMSLVDEFPDV 831

Query: 61   -VIIEKAN----AAPIIVAYHFNSD----------------------------------- 80
              II + N        +    F S                                    
Sbjct: 832  SDIIGEQNTEKTGVRELFENSFVSTKVKFVMEKIEFLRKSTTTPRNKFVIVSQWVKLLDI 891

Query: 81   -------LARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNI 131
                             G   ++    + ++N  +    ++     + G GLNL  GGN 
Sbjct: 892  LSVHLKKRGISFTCICGGLKNEERGERMAKFNRIDSDPEVMLLSLTAGGVGLNLT-GGNH 950

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            L    L W+  +  Q  +RI      + G  R V +Y  +   TI+E VL+    K  + 
Sbjct: 951  LFLMDLHWNPAQELQASDRI-----NRIGQTRDVVIYKTVCSGTIEEKVLKLQEEKLALA 1005

Query: 192  DLLLNALKKE 201
            + +L+ + ++
Sbjct: 1006 ESVLSGVARQ 1015


>gi|195119131|ref|XP_002004085.1| GI19521 [Drosophila mojavensis]
 gi|193914660|gb|EDW13527.1| GI19521 [Drosophila mojavensis]
          Length = 1865

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               I+ +N     +  +      + G G+NL  G N ++     W+    QQ I RI  
Sbjct: 289 RHEMIKRFNSEANRRARVFLISAKAGGQGINLT-GANRVIILDTSWNPSNDQQNIFRI-- 345

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G K+  ++Y LIA  T++E V  R  TK  +   +++ 
Sbjct: 346 ---FRLGQKKNCYIYRLIAMGTMEEKVYSRSVTKQAMSFRVVDE 386


>gi|145522063|ref|XP_001446881.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414370|emb|CAK79484.1| unnamed protein product [Paramecium tetraurelia]
          Length = 987

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 73/196 (37%), Gaps = 28/196 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIKALEVIIEKANA--APIIVAY 75
            +K ++  ++      + E +                K++ L++ ++K +     +++  
Sbjct: 399 MNKLMQLRKICLHPYLFPEVEDKSLPPLGEHLVEVAGKMRVLDIFLKKLSDGTHQVLIFS 458

Query: 76  HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAHPASCGHGL 123
            F   L  L+      +             +    I E+ +      +      + G G+
Sbjct: 459 QFTMMLNILEDYCNYRKYDYCRIDGETEIQQRDDQIAEFTKPDSKKFIFLLSTRAGGLGI 518

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    + ++ +   ++ +     ++   + R  + G K  V VY +  ++TI+E +++R
Sbjct: 519 NL-ATADTVIIYDSDFNPQ-----MDMQAMDRAHRIGQKNRVMVYRMACEHTIEEKIIER 572

Query: 184 LRTKSTIQDLLLNALK 199
            + K     L++   +
Sbjct: 573 QQIKLRWDSLMIQQGR 588


>gi|116192043|ref|XP_001221834.1| hypothetical protein CHGG_05739 [Chaetomium globosum CBS 148.51]
 gi|88181652|gb|EAQ89120.1| hypothetical protein CHGG_05739 [Chaetomium globosum CBS 148.51]
          Length = 487

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVF 134
           F                 +     + E+N    P         + G GLNLQ   + ++ 
Sbjct: 7   FLRFRGITYLRLDGTTKSEDRSDLLYEFNRPDSPYFMFLLSTRAGGLGLNLQT-ADTVII 65

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+  +     +     R  + G K  V +  LI+  +++E +L+R R K  +   +
Sbjct: 66  YDSDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLISSASVEEKILERARYKLDMDGKV 120

Query: 195 LNALK 199
           + A +
Sbjct: 121 IQAGR 125


>gi|302678131|ref|XP_003028748.1| hypothetical protein SCHCODRAFT_112243 [Schizophyllum commune H4-8]
 gi|300102437|gb|EFI93845.1| hypothetical protein SCHCODRAFT_112243 [Schizophyllum commune H4-8]
          Length = 1327

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 50   EVHDEKIKALEV----IIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLD 95
             +   K+K +      + ++     +I+   +           S+       +    + +
Sbjct: 1140 FLPSTKMKYMMEALERLFKEKPDEKVILVSQWTTALSLLSDYLSERHIAHVKYQGDMSRN 1199

Query: 96   KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 ++ +    K  ++       G GLNL    N ++   L W      + +E     
Sbjct: 1200 ARDAAVRAFMAKDKAKVMLMSLKCGGVGLNLTR-ANNVISLDLGWS-----EAVEAQAFD 1253

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            R  + G  R V V  L+  NT+++ +L     K+ + D  L   K + I
Sbjct: 1254 RVHRLGQTRKVRVERLVIDNTVEDRILGLQERKALLADGALGEGKGKKI 1302


>gi|170095703|ref|XP_001879072.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164646376|gb|EDR10622.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 830

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKA--- 87
                   +E   +     K + +  ++             I+   F S L  ++     
Sbjct: 629 CVPLAIQAKEAEEERPSSAKTRMILKLLNDIDERSDCEEKTIIFSQFTSMLDLIEPFLSE 688

Query: 88  -------FPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                  +    +  +   ++ +    K   ++     +   GLNL    N ++   LWW
Sbjct: 689 EGVKYVRYDGSMSAKEREVSLAKIKSSKSTRVILISFKAGSTGLNLTA-CNNVILVDLWW 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        E     R  + G  R V ++ L   NT+++ +L     K  +    L+  K
Sbjct: 748 NPAL-----EDQAFDRAHRFGQTRDVNIFKLKIDNTVEDRILALQDKKRQLAQAALSGDK 802

Query: 200 KETIHV 205
            + + +
Sbjct: 803 IKNMRL 808


>gi|218457856|ref|YP_002418861.1| hypothetical protein PPSN_gp55 [Pseudomonas phage SN]
 gi|218379124|emb|CAT99710.1| hypothetical protein [Pseudomonas phage SN]
 gi|294663794|gb|ADF29348.1| putative helicase [Pseudomonas phage JG024]
          Length = 519

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
                LE ++E+     IIV      ++ +++            +       +    I +
Sbjct: 360 VFTDLLEGLLEEDPERSIIVWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q  +R       + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLTA-ADVAIYYTTDEDNELRMQSEDR-----NHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|294462184|gb|ADE76644.1| unknown [Picea sitchensis]
          Length = 407

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNI 131
                 +            ++ K    +Q +N+             + G GLNL  GGN 
Sbjct: 32  FAQICRERNYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNL-IGGNR 90

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           LV F   W+        ++    R  + G K+ V++Y  +   TI+E V QR  +K  +Q
Sbjct: 91  LVLFDPDWNPAN-----DKQAAARVWRDGQKKRVYIYRFLTTGTIEEKVYQRQMSKEGLQ 145

Query: 192 DLL 194
            ++
Sbjct: 146 KVV 148


>gi|71028038|ref|XP_763662.1| ATP-dependant helicase [Theileria parva strain Muguga]
 gi|68350616|gb|EAN31379.1| ATP-dependant helicase, putative [Theileria parva]
          Length = 969

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 49  KEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF------------PQGRTL 94
           + V   K+     II   K     I++     + L  + +                  T+
Sbjct: 642 ESVGSSKLNVSLKIIEMWKKENKKILLFTQTITMLNIIYEHLLETYEKDEILVLYGKHTV 701

Query: 95  DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I+++ N+ K+ L+       G GLNL      ++ +   W+             
Sbjct: 702 KNRNKIIEQFSNDDKVFLMILTTKVGGIGLNLTA-ATRIIIYDPDWNPMTDM-----QAK 755

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K  V +Y LI  +TI+E + QR   K  +   +L+
Sbjct: 756 ERCYRIGQKNEVIIYRLITASTIEEKIYQRQLYKYYLSQQILS 798


>gi|159126292|gb|EDP51408.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 975

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
              KI+AL  I+    +A     +V   + S L  ++    +                +D
Sbjct: 802 PSSKIEALIKILTAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARD 861

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +   + +  +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 862 ASTYKFSKDPQCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 915

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G KR   V+ L+ +NTI++ VL+   TK  + 
Sbjct: 916 RLGQKRETTVWRLVMENTIEDRVLEIQDTKRKLM 949


>gi|168048890|ref|XP_001776898.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162671754|gb|EDQ58301.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1122

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 65/231 (28%), Gaps = 64/231 (27%)

Query: 22   AFNSASKTVKCLQLANGAVY--------------------------YDEEKHWKEV---- 51
            +    S      +L +                              + +     EV    
Sbjct: 809  SATILSSITSLRKLCSHPQLSYNDIIEGTNLDAELKSQIIAAGLSRFSDSTDNIEVLQSR 868

Query: 52   ---------HDEKIKALEVIIEK-------ANAAPIIVAYHFNSDLARLQKAFPQ----- 90
                        K+  L  ++              ++V  +F   L  +Q          
Sbjct: 869  ASLSDEGWKFSGKLACLYWLLRTVYTSRTARQKDRVVVVSNFTRTLDLIQDMCTSQGWNW 928

Query: 91   -----GRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      K    + + N G   + +      + G GLNL  G N LV F   W+   
Sbjct: 929  LRLDGSTEASKRQLLVDQLNSGVGDVFVFLLSSKAGGTGLNL-IGANRLVLFDPDWNPAT 987

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              Q I RI      + G  + V +Y L++  +I+E + QR   K  +   +
Sbjct: 988  DSQAIARIW-----REGQLKPVLIYRLLSTGSIEEKIYQRQIMKGGMSAAV 1033


>gi|151946506|gb|EDN64728.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
          Length = 790

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 699 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 752

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 753 RIIELQEKKANMIHATINQDEA 774


>gi|303318791|ref|XP_003069395.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109081|gb|EER27250.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 956

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 50  EVHDEKIKALEVIIE---KANAAPIIVAYHFNSDL-----ARLQKAFPQGRTLDKDPCTI 101
           E    KI+AL  I+    +A  +  +V   + S L       ++      R   K   T 
Sbjct: 780 EESSSKIQALIKILTAQGQAPGSKTVVFSQWTSFLDLIEPQLVKHNITFTRIDGKRSSTK 839

Query: 102 QE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           ++       N+    ++ A    C  GLNL    N ++    WW        IE   V R
Sbjct: 840 RDVAMATLTNDPNCTVMLASLNVCSVGLNLVA-ANQVILTDSWWAPA-----IEDQAVDR 893

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             + G KR   V+ L+ + +I++ VL   + K  + 
Sbjct: 894 VYRLGQKRPTTVWRLVMEGSIEDRVLDIQKRKRDLM 929


>gi|195342147|ref|XP_002037663.1| GM18179 [Drosophila sechellia]
 gi|194132513|gb|EDW54081.1| GM18179 [Drosophila sechellia]
          Length = 994

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + ++ F   W+ +      +     
Sbjct: 2   RRQALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQA 55

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K  V +Y L+   +++E +++R + K  +  L++  +
Sbjct: 56  RAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRM 99


>gi|268534396|ref|XP_002632329.1| Hypothetical protein CBG00336 [Caenorhabditis briggsae]
          Length = 753

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 95  DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 ++ +N+      +      + G GLNL  G + LV F   W+    QQ + RI 
Sbjct: 488 QDRQKLVRNFNDQRDPSNIFLLSTKAGGVGLNL-IGASRLVLFDSDWNPANDQQAMARIW 546

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G  R   +Y LI   TI+E +LQR   K+ +   +++A++
Sbjct: 547 -----RDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIE 587


>gi|70998504|ref|XP_753974.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66851610|gb|EAL91936.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
          Length = 975

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
              KI+AL  I+    +A     +V   + S L  ++    +                +D
Sbjct: 802 PSSKIEALIKILTAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARD 861

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +   + +  +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 862 ASTYKFSKDPQCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 915

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G KR   V+ L+ +NTI++ VL+   TK  + 
Sbjct: 916 RLGQKRETTVWRLVMENTIEDRVLEIQDTKRKLM 949


>gi|14195095|sp|P79051|RHP16_SCHPO RecName: Full=ATP-dependent helicase rhp16; AltName: Full=DNA
           repair protein rhp16; AltName: Full=RAD16 homolog
          Length = 861

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  +     +          G T      TI+ + N+  I +      +
Sbjct: 710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 769

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G KR + V  L  +N+I+ 
Sbjct: 770 GGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI-----HRIGQKRPIKVITLCIENSIES 823

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    ++  +K    +
Sbjct: 824 KIIELQEKKAQMIHATIDQDEKALNQL 850


>gi|320034534|gb|EFW16478.1| helicase SWR1 [Coccidioides posadasii str. Silveira]
          Length = 957

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 50  EVHDEKIKALEVIIE---KANAAPIIVAYHFNSDL-----ARLQKAFPQGRTLDKDPCTI 101
           E    KI+AL  I+    +A  +  +V   + S L       ++      R   K   T 
Sbjct: 781 EESSSKIQALIKILTAQGQAPGSKTVVFSQWTSFLDLIEPQLVKHNITFTRIDGKRSSTK 840

Query: 102 QE------WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           ++       N+    ++ A    C  GLNL    N ++    WW        IE   V R
Sbjct: 841 RDVAMATLTNDPNCTVMLASLNVCSVGLNLVA-ANQVILTDSWWAPA-----IEDQAVDR 894

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             + G KR   V+ L+ + +I++ VL   + K  + 
Sbjct: 895 VYRLGQKRPTTVWRLVMEGSIEDRVLDIQKRKRDLM 930


>gi|255550546|ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
 gi|223544553|gb|EEF46070.1| ATP binding protein, putative [Ricinus communis]
          Length = 1109

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 25/209 (11%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEVIIE 64
           +R     L+G +  +   A    K    A       E+  ++E H     KI  +  +++
Sbjct: 710 KRAAEDVLEGMDFISPEDAGLAEKL---ALHVADVAEKAEFQEKHDNISCKISFIMSLLD 766

Query: 65  K--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPL 111
                   +++       L  +Q                         + ++ EG   P+
Sbjct: 767 NLIPEGHNVLIFSQSRKMLNLIQDSLASNGYEFLRIDGTTKASDRVKIVNDFQEGVGAPI 826

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                   G GL L    + ++     W+     Q ++R       + G ++ V VY L+
Sbjct: 827 FLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQRKDVLVYRLM 880

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              T++E + ++   K  +        ++
Sbjct: 881 TCGTVEEKIYRKQIFKGGLFKTATEHKEQ 909


>gi|218194432|gb|EEC76859.1| hypothetical protein OsI_15041 [Oryza sativa Indica Group]
          Length = 1138

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
            +  +         K+  L  I+E  +      IV   F S    L+  F Q         
Sbjct: 960  FQVDPENNWKDSCKVIKLIKILEGLQEKREKSIVFSQFTSFFDLLEVPFNQKGIKFLRFD 1019

Query: 93   ---TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +       ++E++E K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 1020 GKLSQKHREKVLKEFSESKDKLVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAI 1078

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G KRAV V   I ++T++E + +    K  +    L   +  +  +
Sbjct: 1079 MRI-----HRIGQKRAVQVRRFIVKDTVEERMQKVQACKQRMISGALTDDEVRSARI 1130



 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 45/209 (21%), Gaps = 46/209 (22%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    N     ++  Q  +           +     K  
Sbjct: 804 YEALFRRSKVQFDKFVAQGSVLNNYANILELLLRLRQCCDHPFLVISRADTQ-----KYT 858

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L+ +           A  F   + R         +       ++E  +G          
Sbjct: 859 DLDEL-----------AQRFLDGVQRDSARRSAPPSQAYVEEVVEEIRQGATTECPICLE 907

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER--------IGVTRQRQAGF----- 161
           S      L    + +      S W         + R        I +  Q +        
Sbjct: 908 SASDDPVLTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPENN 967

Query: 162 -KRAVFVYYLIAQNTIDELVLQRLRTKST 189
            K +  V  LI        +L+ L+ K  
Sbjct: 968 WKDSCKVIKLI-------KILEGLQEKRE 989


>gi|58531994|emb|CAE04094.3| OSJNBa0096F01.3 [Oryza sativa Japonica Group]
          Length = 1132

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
            +  +         K+  L  I+E  +      IV   F S    L+  F Q         
Sbjct: 954  FQVDPENNWKDSCKVIKLIKILEGLQEKREKSIVFSQFTSFFDLLEVPFNQKGIKFLRFD 1013

Query: 93   ---TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +       ++E++E K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 1014 GKLSQKHREKVLKEFSESKDKLVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAI 1072

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G KRAV V   I ++T++E + +    K  +    L   +  +  +
Sbjct: 1073 MRI-----HRIGQKRAVQVRRFIVKDTVEERMQKVQACKQRMISGALTDDEVRSARI 1124



 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 45/209 (21%), Gaps = 46/209 (22%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    N     ++  Q  +           +     K  
Sbjct: 798 YEALFRRSKVQFDKFVAQGSVLNNYANILELLLRLRQCCDHPFLVISRADTQ-----KYT 852

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L+ +           A  F   + R         +       ++E  +G          
Sbjct: 853 DLDEL-----------AQRFLDGVQRDSARRSAPPSQAYVEEVVEEIRQGATTECPICLE 901

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER--------IGVTRQRQAGF----- 161
           S      L    + +      S W         + R        I +  Q +        
Sbjct: 902 SASDDPVLTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPENN 961

Query: 162 -KRAVFVYYLIAQNTIDELVLQRLRTKST 189
            K +  V  LI        +L+ L+ K  
Sbjct: 962 WKDSCKVIKLI-------KILEGLQEKRE 983


>gi|50292251|ref|XP_448558.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527870|emb|CAG61521.1| unnamed protein product [Candida glabrata]
          Length = 830

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG-KIPLLFAHPAS 118
             IV   F S L  ++    +            +  +   TI+ + +  +  +      +
Sbjct: 679 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDQTIKYFMDNIECEVFLVSLKA 738

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 739 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 792

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    +N  +     +
Sbjct: 793 RIIELQEKKANMIHATINQDEAAINRL 819


>gi|28972640|dbj|BAC65736.1| mKIAA1122 protein [Mus musculus]
 gi|148666357|gb|EDK98773.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1`, isoform
            CRA_c [Mus musculus]
          Length = 1071

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
               +   +          K  Q     +   +      +   K +AL  I+ +       
Sbjct: 862  LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRALGCILSELKQKGDR 917

Query: 71   IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
            +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 918  VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 977

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 978  GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 1031

Query: 180  VLQRLRTKSTIQDLL 194
            +L+  + K  ++  +
Sbjct: 1032 MLKINQQKLKLEQDM 1046


>gi|294942448|ref|XP_002783529.1| DNA repair protein rad54, putative [Perkinsus marinus ATCC 50983]
 gi|239896026|gb|EER15325.1| DNA repair protein rad54, putative [Perkinsus marinus ATCC 50983]
          Length = 682

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 20/172 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK----------- 86
               ++    E    K++ L  ++   K N   +++   + S L  +Q            
Sbjct: 512 ALPQDDGRKIEALSSKLQVLHCLLRRLKENGHRVLLFCPWTSMLDLVQYTILRTDGMSCL 571

Query: 87  -AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  + D+     +  N  K             GL L    + +V  S  W+  +  
Sbjct: 572 RIDGSTPSSDRQRKIRKFQNSKKYFAFVLSTRCGHVGLTLTA-ADRVVLISPSWNPSD-- 628

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +   V R  + G +R V  Y L+   TI+E + QR  TK     ++L  
Sbjct: 629 ---DDQAVARAYRIGQRRDVIAYRLVCSGTIEERIFQREVTKIGDSKVILED 677


>gi|224089945|ref|XP_002308876.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222854852|gb|EEE92399.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 799

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP---L 111
           +  A   +V   F   L  L++   +               K    I+++         +
Sbjct: 640 ENPARKSVVFSQFQKMLVLLEEPLKEAGFKILRLDGSMNAKKRAQVIKQFGVPGPDGPTV 699

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L A   + G G+NL    + +     WW+       +E   + R  + G +  V V  LI
Sbjct: 700 LLASLKASGAGINL-AVASRVYLLEPWWNPA-----VEEQAMDRVHRIGQEEDVTVVRLI 753

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           AQ++I+E +L+    K  +      
Sbjct: 754 AQSSIEERILEMQERKKKLAKEAFG 778


>gi|256081844|ref|XP_002577177.1| transcriptional regulator atrx homolog (X-linked nuclear protein-1)
            [Schistosoma mansoni]
 gi|238662474|emb|CAZ33414.1| transcriptional regulator atrx homolog (X-linked nuclear protein-1),
            putative [Schistosoma mansoni]
          Length = 1673

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 11/149 (7%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLAR--LQKAFPQGRTLDKDPCTIQEWN---EGKIP 110
            +  +E  + + N      +   ++   R    +       ++        +N     ++ 
Sbjct: 1370 LDLVERFLAEINHLSAYFSDIGHNTWIRGLDYERMDGSMNVNVRKDLQTRFNSTSNTRLR 1429

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N L+     W+        +   + R  + G  + V++Y L
Sbjct: 1430 LFIISTKAGGLGINLVS-ANRLILLDASWNPSH-----DIQSIFRSYRFGQSKPVYIYRL 1483

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            IA+ TI+E +  R  TK ++   +++ L+
Sbjct: 1484 IAKGTIEEKIYDRQVTKQSLSLRVIDELQ 1512


>gi|170092931|ref|XP_001877687.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
           bicolor S238N-H82]
 gi|164647546|gb|EDR11790.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
           bicolor S238N-H82]
          Length = 1051

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 36/185 (19%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN 105
           +  L  II        ++  H+ S L  L+    +               K    +  +N
Sbjct: 726 LAKLLTIIRHTTEEKCVLVSHYTSTLNILEAFCQKKGYSYYRLDGQTPQVKRQEYVNAFN 785

Query: 106 EGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDL-----------EEHQQMIERI 151
                   +      + G G+NL  G + L      W+                   +  
Sbjct: 786 NVSQRSSFIFLLSSKAGGLGINL-IGASRLCLIDSDWNPRLVGRRTQLTPTLISDSHDLQ 844

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-----------NALKK 200
            + R  + G KR VF+Y  +    IDE + QR  TK  +   L+           ++  +
Sbjct: 845 SMARCHRDGQKRPVFIYRFLTTGAIDEKIYQRQVTKLGLSASLIGSAGSSSASKTDSFSR 904

Query: 201 ETIHV 205
           + +H+
Sbjct: 905 KEVHI 909


>gi|307111435|gb|EFN59669.1| hypothetical protein CHLNCDRAFT_49470 [Chlorella variabilis]
          Length = 1117

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 20/159 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA---------RLQKAF 88
              +E          K   +  +++         ++       L          + +   
Sbjct: 645 RLLEEVHTTGFAASCKTVFVMALLKNLVGEGHRTLIFSQSRVMLNILESAIKEEQWRYCR 704

Query: 89  PQGRTLD--KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             G      +    ++++     IP+        G GL L    + ++     W+     
Sbjct: 705 IDGSVASAAEREARVRQFQTSHTIPIFLLTSQVGGLGLTLTA-ADRVIILDPAWNPSTDN 763

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           Q ++R       + G KR V VY LI+  T++E + +R 
Sbjct: 764 QSVDR-----AYRIGQKRDVVVYRLISCGTVEENIYRRQ 797


>gi|71991518|ref|NP_510607.2| human CSB (Cockayne Syndrome B) homolog family member (csb-1)
           [Caenorhabditis elegans]
 gi|30145715|emb|CAB03135.2| C. elegans protein F53H4.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 957

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 57/202 (28%), Gaps = 25/202 (12%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKANA 68
            +         +         + N    Y                 K++    + +    
Sbjct: 476 QVNEIIERRLKAFVGINHLTNICNHPGIYRSLSPASPKFGSIKDSGKVEMTFKLFDDWFK 535

Query: 69  APIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEG-KIPLLFA 114
           +P      F      +                     +    P  I+++ +   I +   
Sbjct: 536 SPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKKFEDDVSIKVFLM 595

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    N ++ F   W+ +      +     R  + G    V +Y L++  
Sbjct: 596 TTRAGGLGLNLT-CANKVIIFDPDWNPQA-----DNQAKNRIYRMGQTNDVAIYRLVSNG 649

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI++L   +   K  +   LL+
Sbjct: 650 TIEDLKFFKQVQKENLAARLLH 671


>gi|255076351|ref|XP_002501850.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517114|gb|ACO63108.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1989

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
             K   L  ++    ++    +V     + L                       D+    
Sbjct: 785 SGKCAFLMSLLRHLASSGHRTLVFSQSRAMLDVLESAARADGHDLVRIDGKVPADERHAR 844

Query: 101 IQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++ +     IPL        G GL L    + +V +   W+     Q ++R       + 
Sbjct: 845 VERFQSTPSIPLALLTSQVGGLGLTLTA-ADRVVIYDPAWNPAADSQSVDR-----AYRI 898

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G  + V VY L+   T++E V +R   K  +   
Sbjct: 899 GQTKDVVVYRLVTCGTVEEKVYRRQVFKGGLSRA 932


>gi|6319590|ref|NP_009672.1| Rad16p [Saccharomyces cerevisiae S288c]
 gi|400920|sp|P31244|RAD16_YEAST RecName: Full=DNA repair protein RAD16; AltName: Full=ATP-dependent
           helicase RAD16
 gi|3551|emb|CAA46974.1| excision repair protein [Saccharomyces cerevisiae]
 gi|476069|emb|CAA55616.1| UV damage repair protein [Saccharomyces cerevisiae]
 gi|487900|gb|AAA34931.1| RAD16 [Saccharomyces cerevisiae]
 gi|536453|emb|CAA85071.1| RAD16 [Saccharomyces cerevisiae]
 gi|285810448|tpg|DAA07233.1| TPA: Rad16p [Saccharomyces cerevisiae S288c]
          Length = 790

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 699 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 752

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 753 RIIELQEKKANMIHATINQDEA 774


>gi|148807359|gb|ABR13433.1| putative DNA helicase [Pseudomonas aeruginosa]
          Length = 657

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 441 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 499

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 500 LLSELDAEDKVILFCEFKPTVAALKELCEQAGLGCVTLVGNDSLTKRQKAIDRFQQDPDC 559

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 560 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 613

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 614 PLVEGTIDEQLWQLLNAKRQVAQDLIE 640


>gi|152984418|ref|YP_001349818.1| SNF2 family helicase [Pseudomonas aeruginosa PA7]
 gi|150959576|gb|ABR81601.1| helicase, SNF2 family [Pseudomonas aeruginosa PA7]
          Length = 658

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 441 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 499

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 500 LLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDRFQQDPDC 559

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 560 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 613

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 614 PLVEGTIDEQLWQLLNAKRQVAQDLIE 640


>gi|310796849|gb|EFQ32310.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 1069

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 26/208 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLAN---GAVYYDEEKHWKEVHDEKIK---- 57
            K    L   +     +  +   + ++ LQ          Y        + + +      
Sbjct: 509 QKLSNHLTLLIPAGGGDQDDKYKREIRALQTCCPETWQYLYQNRDAILNLANPEFCGKWK 568

Query: 58  --ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
                +     +   ++V  H    L  LQ  F              + +     + ++N
Sbjct: 569 VLKKLLKFWHDSGDKVLVFSHSVRLLRILQHLFHNTSYSVTYLDGSVSYEDRQKAVDDFN 628

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G GLN+    N +V     W+        +     R  + G  R 
Sbjct: 629 SDPTQFVFLISTKAGGVGLNITS-ANKVVIVDPHWNPS-----YDLQAQDRAYRIGQVRD 682

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V V+ L++  TI+E+V  R   K    +
Sbjct: 683 VDVFRLVSTGTIEEIVYARQIYKQQQAN 710


>gi|302813768|ref|XP_002988569.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
 gi|300143676|gb|EFJ10365.1| hypothetical protein SELMODRAFT_128228 [Selaginella moellendorffii]
          Length = 601

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 64/190 (33%), Gaps = 31/190 (16%)

Query: 30  VKCLQLANGAVYYDEEKHWKEV---------HDEKIKALEVIIE---KANAAPIIVAYHF 77
           ++  +  N      +E +                K+K L   +    K+    +++    
Sbjct: 333 MQLRKNCNHPDLLRQEFNQDYDWPPVEQLTAECGKLKFLLDRLLPPLKSRGHRVLIFSQM 392

Query: 78  NSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
              L  L+    +                +    I    EG   +      + G G+NL 
Sbjct: 393 TKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITFSREGF--VFLLSTRAGGLGINLT 450

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +L+   +
Sbjct: 451 S-ADTAIIYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATAHSVECRMLKVANS 504

Query: 187 KSTIQDLLLN 196
           K  ++ L++N
Sbjct: 505 KLQLETLVIN 514


>gi|170050411|ref|XP_001861299.1| chromatin remodelling complex ATPase chain Iswi [Culex
           quinquefasciatus]
 gi|167872033|gb|EDS35416.1| chromatin remodelling complex ATPase chain Iswi [Culex
           quinquefasciatus]
          Length = 730

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 27/210 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIKAL 59
             R++                  V   ++                          ++  L
Sbjct: 385 LCRDVPLLKGDGTYVGMTMGMLFVYLREITIHPYMIPPADPDSNSLGQHLVDSCSRMIVL 444

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           + ++ +     + +++   F   L  L+                   +     I E+N  
Sbjct: 445 DKLLTRLKARGSRVLLFSQFVLMLNILEDYLVWKGYKYSRLTGTTPQETRQKMIDEFNSP 504

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +  +      S G G+NL    + ++F+ L W+ +      +     R  + G  + V
Sbjct: 505 GSETFIFMITTRSGGLGINLPT-ADTVIFYDLDWNPQA-----DFQAEDRAHRIGQLKQV 558

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V+  +   T+DE V    + K+ +   ++
Sbjct: 559 HVFRFVILGTVDEAVYGHSQRKTQLDKAIV 588


>gi|302782409|ref|XP_002972978.1| hypothetical protein SELMODRAFT_413336 [Selaginella moellendorffii]
 gi|300159579|gb|EFJ26199.1| hypothetical protein SELMODRAFT_413336 [Selaginella moellendorffii]
          Length = 937

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 19/163 (11%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
           +  K+ AL+ ++    +    +++  +    L  L+                  ++    
Sbjct: 512 NCGKMLALKNLLSKWTSQGDKVLLFSYSVRMLGILEKFLIRRGYCFCRLDGSTPMNARQG 571

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + E+N      +      + G GLNL    N +V F   W+  +     +     R  +
Sbjct: 572 IVDEFNTSPSKQVFLISTRAGGLGLNLVS-ANRVVVFDPNWNPAQ-----DLQAQDRSFR 625

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G KR V V+ L+A  +++EL+  R   K  + +L +   +++
Sbjct: 626 FGQKRHVTVFRLLAAGSLEELIYTRQIYKQQLFNLAVTGNREK 668


>gi|323349726|gb|EGA83941.1| Rad16p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 790

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 699 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 752

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 753 RIIELQEKKANMIHATINQDEA 774


>gi|300708443|ref|XP_002996400.1| hypothetical protein NCER_100499 [Nosema ceranae BRL01]
 gi|239605700|gb|EEQ82729.1| hypothetical protein NCER_100499 [Nosema ceranae BRL01]
          Length = 664

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 24/159 (15%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLL 112
            K N    IV   + + L  L+                  +++    I+++N +  I + 
Sbjct: 508 NKNNLEKSIVFSQYVNFLEILRWRLERAGFRCVVIYGNMPINQRKAAIEKFNTDHNITVF 567

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G  LNL    N +    LWW+    +Q ++RI      + G  R + ++ +I 
Sbjct: 568 LISLKAGGVALNLTE-ANNVFLMDLWWNPAVEEQAMDRI-----HRIGQHRPIKIHRVII 621

Query: 173 QNTIDELVLQRLRTKSTIQD-------LLLNALKKETIH 204
           +N+I+  +L+  + K  + +         +  + +E +H
Sbjct: 622 ENSIESKILELQKKKKALFESSVERNYAAVEKISEEDLH 660


>gi|255072671|ref|XP_002500010.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515272|gb|ACO61268.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 800

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 48  WKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLD 95
             E    K+  L  ++   +      ++   + S L  + +A                 +
Sbjct: 644 HDEAMSGKLAVLIRMLQGMRRGIDKTVIVSGYTSTLDIIAEACLVMGGKVSRLDGSVPPN 703

Query: 96  KDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    +  +N G+   +      + G GLNL  G N LV F   W+        +   + 
Sbjct: 704 QRVPLVNSFNAGRGGDVFLLSTKAGGVGLNL-VGANRLVLFDSDWNPAN-----DLQALA 757

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           R  + G KR V +Y L++  T++E + QR   K  +   +
Sbjct: 758 RVWRDGQKRPVTIYRLVSTGTVEEKIFQRQMLKGDVASCM 797


>gi|170114883|ref|XP_001888637.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164636332|gb|EDR00628.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 163

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAHP 116
               I+   F S L+ +  A  +  T            +    ++    + +  ++    
Sbjct: 15  GEKTIIFSSFVSLLSLIGDALAERHTGFTSYTGALSSAQRQMALKRISQDTQCQVILISI 74

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLN+    N ++    WW+       +E   ++R  + G  + V VY ++A+NTI
Sbjct: 75  KAGGTGLNITA-CNHVIIMDPWWNP-----YVEEQAISRAHRIGQSKDVHVYRILARNTI 128

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E +++    K    +  L+
Sbjct: 129 EERIVEIQNKKRETIEAFLD 148


>gi|255730915|ref|XP_002550382.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
 gi|240132339|gb|EER31897.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
          Length = 855

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  ++    +                +D          ++
Sbjct: 695 KLRSDKHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQGSMTPQQRDNTIKHFMENTEV 754

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 755 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIKITR 808

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+ +    +N
Sbjct: 809 FCIEDSIESKIIELQEKKANMIHATIN 835


>gi|171680898|ref|XP_001905393.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940407|emb|CAP65633.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1112

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 17/150 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
            IK L  + +       +V   F S L                     +       ++E+ 
Sbjct: 948  IKKLRELRKGHPTIKSVVFSQFTSFLSLIEPALTQANMHFVRLDGSMSQKARAAVLEEFK 1007

Query: 106  EG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E  +  +L     + G GLNL      +     WW        IE   + R  + G +  
Sbjct: 1008 ESKRFTVLLLSLKAGGVGLNLT-MAKRVFMMDPWWSFA-----IEAQAIDRVHRMGQEDE 1061

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V +Y  I + +++E +L+    K  I   L
Sbjct: 1062 VKIYRFIVKGSVEERMLKIQERKKLIASSL 1091


>gi|227544270|ref|ZP_03974319.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|227185750|gb|EEI65821.1| possible helicase [Lactobacillus reuteri CF48-3A]
          Length = 224

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 3/125 (2%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +   +L    QG+ I+A N+AS + K  Q+ANG V YD+++   ++H  K+ ALE +
Sbjct: 101 IYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCV-YDDQQQIVQIHQRKLDALEDL 159

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           +E AN  P++VAY F  DL +++          K P  IQ+WN GKIPL   HPAS GHG
Sbjct: 160 VEAANGKPVLVAYWFKHDLIQIK--SRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHG 217

Query: 123 LNLQY 127
           LNLQ 
Sbjct: 218 LNLQA 222


>gi|315045788|ref|XP_003172269.1| DNA repair protein RAD16 [Arthroderma gypseum CBS 118893]
 gi|311342655|gb|EFR01858.1| DNA repair protein RAD16 [Arthroderma gypseum CBS 118893]
          Length = 946

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  + N     +      
Sbjct: 792 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMNNVDTEVFLVSLK 851

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 852 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 905

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 906 SRMVLLQEKKANMINGTINKDQSEALE 932


>gi|190408727|gb|EDV11992.1| DNA repair protein RAD16 [Saccharomyces cerevisiae RM11-1a]
 gi|207347673|gb|EDZ73768.1| YBR114Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270306|gb|EEU05519.1| Rad16p [Saccharomyces cerevisiae JAY291]
 gi|290878128|emb|CBK39187.1| Rad16p [Saccharomyces cerevisiae EC1118]
          Length = 790

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 699 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 752

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 753 RIIELQEKKANMIHATINQDEA 774


>gi|320035113|gb|EFW17055.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
          Length = 1011

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 53/208 (25%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVI----------------------------- 62
             +L N       +    E   EK  A+  +                             
Sbjct: 542 LQKLCNHPATLIPQSTDPEEKQEKDLAMLEVAVPDQWRELYRTRGSILNYSNPEFCGKWK 601

Query: 63  -------IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN 105
                     AN   ++V  H    L  LQ  F              + +     + ++N
Sbjct: 602 VLKKLLKWWHANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFN 661

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  +      + G GLN+    N +V     W+        +     R  + G +R 
Sbjct: 662 ADPRQFVFLISTKAGGVGLNITS-ANKVVVVDPNWNPSH-----DLQAQDRAYRIGQRRD 715

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V V+ L++  TI+E+V  R   K    +
Sbjct: 716 VEVFRLVSAGTIEEIVYARQIYKQQQAN 743


>gi|241952695|ref|XP_002419069.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223642409|emb|CAX42654.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 870

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 68/189 (35%), Gaps = 26/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           K ++   + N    Y       +     +  K + L  ++    ++   +++   F   L
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQTEVIRNSAKFQILNQLLPPLLSSGHKVLIFAQFTQVL 640

Query: 82  ARLQKAFPQG--------------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             L+    +                   +D    Q  N  K  +      + G G+NL  
Sbjct: 641 DLLEDWLEESSSLNGRICRLDGSTNHQIRDEQISQFNNNPKFKVFLLSTRAGGLGINLVA 700

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++     W+ +     ++   + R  + G    V ++  + +++I+E+++ R  +K
Sbjct: 701 -ADTVILMDNDWNPQ-----MDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 755 RFLERLVIQ 763


>gi|218202221|gb|EEC84648.1| hypothetical protein OsI_31541 [Oryza sativa Indica Group]
          Length = 844

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------------APII 72
             ++  +  N     +               +E ++E+                    ++
Sbjct: 569 LLIQLRKNCNHPDLLESAYD----SSGLYPPVEKLLEQCGKFQLLNRLLSLLLARKHKVL 624

Query: 73  VAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  ++                  L++    I E+N+    + +      + G
Sbjct: 625 IFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGG 684

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +
Sbjct: 685 LGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRI 738

Query: 181 LQRLRTKSTIQDLLLN 196
           +++   K  ++ +++ 
Sbjct: 739 IKKAFGKLRLEHVVIG 754


>gi|328720228|ref|XP_001950291.2| PREDICTED: lymphoid-specific helicase-like [Acyrthosiphon pisum]
          Length = 759

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 62/190 (32%), Gaps = 29/190 (15%)

Query: 31  KCLQLANGAVYYDEE----------KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
           +  ++ N                           K + L+ ++ K       +++     
Sbjct: 503 QLKKIVNHPYLVQMPLIPGENKLLVDENITKVSGKFQLLDAMLTKLKILGHKVLLFSTMT 562

Query: 79  SDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             +  +++     +                       ++ +  ++     + G GLNL  
Sbjct: 563 QLMDVIEEFLMFRKFSFTRLDGTMSIQLRVDAMTTFNSDPECFIMMISTRAGGLGLNLTS 622

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++ F   W+ +     ++     R  + G  + V VY   ++NTIDE +L     K
Sbjct: 623 -ADTVILFDSDWNPQ-----VDLQAQDRCHRMGQTKPVVVYRFCSKNTIDERILNFATAK 676

Query: 188 STIQDLLLNA 197
             ++ +++ +
Sbjct: 677 RKLEKMIIGS 686


>gi|116235005|dbj|BAF34942.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group]
 gi|116235009|dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group]
 gi|222641670|gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group]
          Length = 845

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------------APII 72
             ++  +  N     +               +E ++E+                    ++
Sbjct: 570 LLIQLRKNCNHPDLLESAYD----SSGLYPPVEKLLEQCGKFQLLNRLLSLLLARKHKVL 625

Query: 73  VAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  ++                  L++    I E+N+    + +      + G
Sbjct: 626 IFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGG 685

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +
Sbjct: 686 LGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRI 739

Query: 181 LQRLRTKSTIQDLLLN 196
           +++   K  ++ +++ 
Sbjct: 740 IKKAFGKLRLEHVVIG 755


>gi|312076547|ref|XP_003140910.1| SNF2 family domain-containing protein [Loa loa]
 gi|307763929|gb|EFO23163.1| SNF2 family domain-containing protein [Loa loa]
          Length = 926

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 21/176 (11%)

Query: 34  QLANGAVYYDEEKHWKE--VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA------- 82
           QL +      +    +E  +   K K L+ ++   K     +++   F S +        
Sbjct: 731 QLCSKFTSTQKFILNEEVALESGKFKELDKLLPSIKEKGDKVLIFSQFTSVMDILEVYLK 790

Query: 83  ---RLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         + +    I E+N    + +      + G G+NL    N ++   + 
Sbjct: 791 LRDHQYCRLDGSTPVMERQDVINEYNSSPDLFVFLLSTKAGGLGINLTA-ANHIILHDID 849

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           ++        ++    R  + G  + VFV  LI+ +T++E +L   + K  ++  +
Sbjct: 850 FNP-----YNDKQAEGRCHRMGQTKDVFVVRLISADTVEEEMLALAQKKLELEKEV 900


>gi|145350214|ref|XP_001419509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579741|gb|ABO97802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 688

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 97  DPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++ +N G+   ++     + G GLNL  G N L+   + W+        +R  + R
Sbjct: 490 RTSIVKNFNSGQGGQVMLLSVVAGGAGLNL-VGANRLILMDVSWNPAH-----DRQAMGR 543

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V +Y L++  T+++ V +R   K  +++ +
Sbjct: 544 IWRDGQTKPVTIYRLVSAGTVEQKVFERQLGKEVLKNTV 582


>gi|218148594|ref|YP_002364362.1| hypothetical protein PP141_gp54 [Pseudomonas phage 14-1]
 gi|218059790|emb|CAU13906.1| hypothetical protein [Pseudomonas phage 14-1]
          Length = 519

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 86/215 (40%), Gaps = 24/215 (11%)

Query: 2   KQYHKFQRELYCDLQGENIE---AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           K Y + + + +  LQ E+     +F++A+   K  Q+A+G +    E       D     
Sbjct: 300 KVYQRVEEDYHFVLQNEDFMLDVSFDAAAARSKLKQVASGYINVYGEPVILPPEDNPRFA 359

Query: 55  -KIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQE 103
                LE ++E+     II+      ++ +++            +       +    I +
Sbjct: 360 VFTDLLEGLLEEDQERSIIIWAMRIQEIDQIKAYLEAQGISFGTYYGETKEAEREKLIDD 419

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +   ++ +   +PA+ G G+ L    ++ ++++   D E   Q  +R       + G   
Sbjct: 420 FQAKRVQVFLGNPAAAGIGITLTA-ADVAIYYTTDEDNELRMQSEDR-----NHRIGTVN 473

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +V  + LI  ++IDE +   L  K  +   +++ +
Sbjct: 474 SVLYFDLICLDSIDEKIQVSLEWKRNLASYVVDGV 508


>gi|242023584|ref|XP_002432212.1| steroid receptor-interacting snf2 domain protein, putative [Pediculus
            humanus corporis]
 gi|212517609|gb|EEB19474.1| steroid receptor-interacting snf2 domain protein, putative [Pediculus
            humanus corporis]
          Length = 2665

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 85   QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       +    I E+N    I +      +   G+NL  G N ++ F   W+   
Sbjct: 1760 YFRLDGSTPGLEREKLINEFNANPNIHMFLVSTRAGSLGINL-VGANRVIVFDASWNP-- 1816

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 +   V R  + G ++  FVY L+  + +++ +  R   K  + D +++ L  +
Sbjct: 1817 ---CHDTQAVCRVYRYGQRKQCFVYRLVMDSCLEKKIYDRQVNKQGMADRVVDELNPD 1871


>gi|168705829|ref|ZP_02738106.1| swi/snf family helicase_2 [Gemmata obscuriglobus UQM 2246]
          Length = 127

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    +  +  +    +L     +   GLNLQ+  N +  F  WW+       IE   +
Sbjct: 1   PQRTPILDRFKSDPSAHVLLMSYGTGSVGLNLQFT-NYVFLFDRWWNPA-----IEDQAI 54

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G K  V V   ++  TI+  +   L  K  + + L+
Sbjct: 55  NRAHRLGQKHPVTVTRFLSGGTIEGRIADILDAKRKVFNDLI 96


>gi|145482121|ref|XP_001427083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394162|emb|CAK59685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 761

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHW-------KEVHDEKIKALEVII--EKANAAPIIVA 74
           +   +     ++       ++++         ++    K   L++++   K     +++ 
Sbjct: 419 SVMMQLNLLRKVTTHPKLIEDDESQAAEKLVVQDYQSVKFNCLKILVDQCKEQNEKVVIN 478

Query: 75  YHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
            ++   L +++    Q               +    + E+N +  I +   +  S G GL
Sbjct: 479 SYYRQTLDQIEHNLIQWNLKFLRLDGKVVQKQRLTLVDEFNKDKDITVFLLNGKSGGTGL 538

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL  G N ++   + W+     Q++ RI      + G ++ V +Y LI   T +E ++QR
Sbjct: 539 NL-VGANKMICVEVDWNPANDSQVMGRIW-----RDGQQKQVHIYRLITCGTYEEKIMQR 592

Query: 184 LRTKSTIQDLLLNA 197
             TK  +   +++ 
Sbjct: 593 QLTKENLSQNIVDE 606


>gi|328696868|ref|XP_001944720.2| PREDICTED: lymphocyte-specific helicase-like [Acyrthosiphon pisum]
          Length = 713

 Score = 80.6 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 61/194 (31%), Gaps = 29/194 (14%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVIIEKAN--AAPIIV 73
            +  ++  +++N           ++              K   L+ ++ K       +++
Sbjct: 454 LNPFIQLKKISNHPYLVHMPLIPEKKKIRVDENIIKASGKFLILDAMLSKLKLLGHKVLL 513

Query: 74  AYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHG 122
                  L  +++                             N     L+     + G G
Sbjct: 514 FSTMTQLLDLIEEFLIFRSYKYTRLDGTMDIANRVKAITTFTNHPDCFLMLISTRAGGLG 573

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           LNL    + ++ F   W+ +      +     R  + G  + V VY L  ++T+DE +L 
Sbjct: 574 LNLTA-ADTVIIFDSDWNPQ-----CDLQAQDRCHRIGQVKPVVVYRLCTKSTVDENILA 627

Query: 183 RLRTKSTIQDLLLN 196
               K  ++ +++ 
Sbjct: 628 HAAAKRKLEKIVIG 641


>gi|149638070|ref|XP_001509622.1| PREDICTED: similar to helicase SMARCAD1 [Ornithorhynchus anatinus]
          Length = 872

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 21/185 (11%)

Query: 32  CLQLAN--GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
              L    G +   + +    +   K K LE I+ +       +++   F   L  L+  
Sbjct: 676 LHLLCKQYGHISDFKLEMDLILDSGKFKTLEYILSELKQKGDRVVLFSQFTMMLDILEVL 735

Query: 88  FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               +             +    I E+N +  I +      + G G+NL    N+++   
Sbjct: 736 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMGIFVFLLSTKAGGLGINLTS-ANVVILHD 794

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  +        ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +  
Sbjct: 795 IDCNP-----YNDKQAEDRCHRVGQTKEVQVIKLISQGTIEESMLKINQHKLKLEQDMTT 849

Query: 197 ALKKE 201
           A + +
Sbjct: 850 ADEGD 854


>gi|242775674|ref|XP_002478688.1| DNA excision repair protein Rad16, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722307|gb|EED21725.1| DNA excision repair protein Rad16, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 949

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I  +     +
Sbjct: 787 KLRSKKQTHKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGSMTPAQRQNSIDHFMKNVDV 846

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 847 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 900

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + + + 
Sbjct: 901 LCIEDSVESRMVALQEKKANMINGTINKDQGDALE 935


>gi|190346518|gb|EDK38617.2| hypothetical protein PGUG_02715 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1155

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 24/179 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQK 86
            +++ +  +        I  L+ I E++    ++V   F+S L                  
Sbjct: 969  IFHYDPDNGSSKIQALILHLQQIQEQSPGERVVVFSQFSSYLDLIENELKVQGSDIFHVV 1028

Query: 87   AFPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             F     + +    I+ +N      ++ +L     + G GLNL    +       WW   
Sbjct: 1029 KFDGRLKMHERNQLIESFNNDDTSPRVSILLLSLKAGGVGLNLTS-ASRAFMMDPWWSPS 1087

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q I+RI      + G  R V V   I Q +I+E +L+    K  I + +  A ++E
Sbjct: 1088 VEDQAIDRI-----HRIGQVRNVKVTRFIIQESIEEKMLKIQERKKQIGEAV-GADEQE 1140


>gi|301103963|ref|XP_002901067.1| transcriptional regulator ATRX [Phytophthora infestans T30-4]
 gi|262101405|gb|EEY59457.1| transcriptional regulator ATRX [Phytophthora infestans T30-4]
          Length = 1272

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IE 64
           KF +          +EA       ++ L          +      +  + I  L+ I + 
Sbjct: 636 KFAKNFMEKYVPHQLEASGKMMILMELLSAC------QDVGDRVIIFSQSIPTLDTIGLM 689

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHG 122
            +        Y                 +       I ++N+    I L+     + G G
Sbjct: 690 ISKHNK----YQRRHSKRLNYLRIDGSTSQQDRFRQIAQFNDLEEDIDLIMISTKAGGEG 745

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL   GN ++ F + W+        +   + R  + G  + VFVY  +   T+++ V  
Sbjct: 746 INLCA-GNRIIIFDVCWNP-----CNDSQSMCRSYRFGQTKPVFVYRFVTMGTMEKKVYD 799

Query: 183 RLRTKSTIQDLLLNA 197
               K  +   +++ 
Sbjct: 800 LQIRKEGVAKRIVDE 814


>gi|84996109|ref|XP_952776.1| DEAD-box family (SNF2-like) helicase [Theileria annulata strain
            Ankara]
 gi|65303773|emb|CAI76150.1| DEAD-box family (SNF2-like) helicase, putative [Theileria annulata]
          Length = 1165

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 19/163 (11%)

Query: 41   YYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
            Y ++      +   KI+ +  +I         I++   F + L  ++             
Sbjct: 1002 YINKINKKLYLESTKIRKMLELISNIIKKKEKILIFSQFTNYLDIIEYIMKLENMKPILR 1061

Query: 93   -----TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 TL +    I+++N   + +L         GLNL    N ++     W+       
Sbjct: 1062 LDGTVTLIEREKIIKKFNNEDVYILLISIKVGNVGLNL-SIANHVILMDQSWNP-----Y 1115

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +     R  + G ++ V VY L  +NTI+E ++ +   K  +
Sbjct: 1116 NDIQAEDRCHRIGQQKIVHVYKLFVKNTIEEYIINQSYNKLQL 1158


>gi|51536001|dbj|BAD38081.1| putative chromatin complex subunit A101 [Oryza sativa Japonica
           Group]
          Length = 846

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------------APII 72
             ++  +  N     +               +E ++E+                    ++
Sbjct: 571 LLIQLRKNCNHPDLLESAYD----SSGLYPPVEKLLEQCGKFQLLNRLLSLLLARKHKVL 626

Query: 73  VAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCG 120
           +   +   L  ++                  L++    I E+N+    + +      + G
Sbjct: 627 IFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILSTRAGG 686

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NL    +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +
Sbjct: 687 LGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRI 740

Query: 181 LQRLRTKSTIQDLLLN 196
           +++   K  ++ +++ 
Sbjct: 741 IKKAFGKLRLEHVVIG 756


>gi|209880656|ref|XP_002141767.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209557373|gb|EEA07418.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 851

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFS 136
            DL           ++ K    ++ +N+             + G G+NL  G N LV F 
Sbjct: 545 RDLQVPCVRLDGSTSITKRHSMVKIFNDPNSNSFAFLLSSKAGGCGINL-IGANRLVMFD 603

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             W+        ++  + R  + G K+  ++Y   +  TI+E + QR   K  +  +L+
Sbjct: 604 PDWNPAN-----DKQALARVWRDGQKKNCYIYRFFSTGTIEEKIYQRQLCKDGLSAMLV 657


>gi|115438138|ref|XP_001217989.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188804|gb|EAU30504.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 948

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
              KI+AL  I+    +A     +V   + S L  L+    +             ++ +D
Sbjct: 774 PSSKIEALVKILTAQGQAPGTKTVVFSQWTSFLNLLEPHLHRVGIGFARIDGKMNSVARD 833

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +   + +  +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 834 NSTYRFSRDPQCTVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 887

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR   V+ L+ +++I++ VL     K  +         K+
Sbjct: 888 RLGQKRETTVWRLVMEDSIEDRVLAIQDVKRQLMSAAFRETSKK 931


>gi|195569079|ref|XP_002102539.1| GD19959 [Drosophila simulans]
 gi|194198466|gb|EDX12042.1| GD19959 [Drosophila simulans]
          Length = 1069

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKD 97
               KI  +  I++    K++    IV   + S L  L+                  +   
Sbjct: 896  PSSKINMVIQILKTTILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNR 955

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N+   +  +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 956  QDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 1009

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 1010 IYRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 1053



 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++        + +++       ++  Q+         +   EE      H      
Sbjct: 775 YKMHEKFARMAGSKKEVKSHEILVLLLRLRQICCHPGLIDAMLDGEESQSMGDHSSDSDT 834

Query: 59  LE-VIIEKANA 68
            E  ++ + N 
Sbjct: 835 PEIDLLAQLNK 845


>gi|323305950|gb|EGA59685.1| Rad16p [Saccharomyces cerevisiae FostersB]
          Length = 765

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++                     +D       N  +  +      +
Sbjct: 614 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGXMSPTQRDETIKYFMNNIQCEVFLVSLKA 673

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 674 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 727

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 728 RIIELQEKKANMIHATINQDEA 749


>gi|168036988|ref|XP_001770987.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162677675|gb|EDQ64142.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1385

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 17/139 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPAS 118
              IV   + S L  L+    +     +              + ++N   ++ ++     +
Sbjct: 1232 KAIVFSQWTSMLDLLETPLKKSGLCYRRLDGTMSVVARDRAVSDFNTLPEVTVMIMSLKA 1291

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLN+    N ++   +WW+        E   + R  + G  R V V     +NTI++
Sbjct: 1292 ASLGLNMVA-ANHVLLLDVWWNPTT-----EDQAIDRAHRIGQTRTVNVSRFTIKNTIED 1345

Query: 179  LVLQRLRTKSTIQDLLLNA 197
             +L     K  I       
Sbjct: 1346 RILALQERKRQIVASAFGE 1364


>gi|155370375|ref|YP_001425909.1| hypothetical protein FR483_N277L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123695|gb|ABT15562.1| hypothetical protein FR483_N277L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 554

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 29/213 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHDEKIK 57
           +K Y  +         G++          ++  Q         +      + E    K+K
Sbjct: 332 LKAYKAY---------GDSEGRMEMLKTLLRLRQCTANITMVPKNDSKDEFYEGTSTKLK 382

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-E 106
            LE  I+ +     ++  HF+ ++  ++                 + D+    I+ +N +
Sbjct: 383 MLEDDIKASPIQKTLIFAHFHKEMTAIKDMLLSNGHKSVSIHGNVSGDERVKAIKHFNED 442

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                     A+ G GLNLQ   + +    + W+        E   + R  + G  + V 
Sbjct: 443 PATNFFIIQIAAGGVGLNLQT-ASRIYINGVDWN-----GTSETQAIARAHRIGQTKPVI 496

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V  LI  ++ID+ ++   + K      +L   +
Sbjct: 497 VKRLIINDSIDDAIIGLQQKKFGAAADILGDER 529


>gi|47221989|emb|CAG08244.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 965

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
              +  L++I EK +    ++   + S L  +     +               +    ++
Sbjct: 796 SAIVSELKMIREKYSDQKSVIVSQWTSMLRIVAVHLRRIGLRYGIIDGTVNPKQRMDLVE 855

Query: 103 EWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           E+N       ++     + G GLNL  GGN L    + W+     Q  +RI      + G
Sbjct: 856 EFNTNAKGPQVMLVSLCAGGVGLNL-IGGNHLFLIDMHWNPALEDQACDRI-----YRVG 909

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + V ++    + T++E +      K  +   +L+ 
Sbjct: 910 QTKDVTIHRFECEGTVEEKISTLQVKKKELAQNVLSG 946


>gi|297663946|ref|XP_002810426.1| PREDICTED: transcription termination factor 2-like [Pongo abelii]
          Length = 1159

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 63/229 (27%), Gaps = 52/229 (22%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII-----------EKANAA 69
               +  S+ ++  Q               E+  E +                   + ++ 
Sbjct: 912  STVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
              +    F  +L    +   +  +L  +   IQ  +  +  ++ +   +    + L    
Sbjct: 972  VSLNGTFFKMELFEDTRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031

Query: 130  NILVF--FSLWWDLEEHQQMIE-------------------------------------- 149
            + L +       + ++   ++E                                      
Sbjct: 1032 HGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVQAESIAFLMAKSYLAQFYHFSRILNPSL 1091

Query: 150  -RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  R  + G ++ V ++  + + T++E +LQ    K  +   +L+ 
Sbjct: 1092 EDQACDRIYRVGQQKDVVIHKFVCEGTVEEKILQLQEKKKDLAKQVLSG 1140


>gi|195144320|ref|XP_002013144.1| GL23550 [Drosophila persimilis]
 gi|194102087|gb|EDW24130.1| GL23550 [Drosophila persimilis]
          Length = 1003

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 76/200 (38%), Gaps = 18/200 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV--- 61
            + ++E       +     +  +  ++ L + N      +     ++  +K++++     
Sbjct: 791 EETKKENI----KKGENVLSDLAGDMELLNINNPIFNTSQPSTKLKIVIQKLQSILEGTT 846

Query: 62  ---IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHP 116
              I+     + + +   + ++       F       +    ++++N  +    +L    
Sbjct: 847 DKVIVVSQWTSFLDIIREYLNEHEWQTLDFNGKMDATEREVVLKDFNVIQNNKRILLLSL 906

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S G GLNL    N L+   L W+ +      ER    R  + G ++  F+Y  + Q+T+
Sbjct: 907 TSGGVGLNL-NVANHLLLVDLHWNPQL-----ERQAQDRIYRYGQQKPTFIYRFMCQDTV 960

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           ++ +      K  I +++L 
Sbjct: 961 EQRIKALQDYKLEIANVVLQ 980


>gi|125589589|gb|EAZ29939.1| hypothetical protein OsJ_13993 [Oryza sativa Japonica Group]
          Length = 1132

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
            +  +         K+  L  I+E  +      IV   F S    L+  F Q         
Sbjct: 954  FQVDPENNWKDSCKVIKLIKILEGLQEKREKSIVFSQFTSFFDLLEVPFNQKGIKFLRFD 1013

Query: 93   ---TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +       ++E++E K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 1014 GKLSQKHREKVLKEFSESKDKLVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAI 1072

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             RI      + G KRAV V   I ++T++E + +    K  +    L   +  +  +
Sbjct: 1073 MRI-----PRIGQKRAVQVRRFIVKDTVEERMQKVQACKQRMISGALTDDEVRSARI 1124



 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 45/209 (21%), Gaps = 46/209 (22%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    N     ++  Q  +           +     K  
Sbjct: 798 YEALFRRSKVQFDKFVAQGSVLNNYANILELLLRLRQCCDHPFLVISRADTQ-----KYT 852

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L+ +           A  F   + R         +       ++E  +G          
Sbjct: 853 DLDEL-----------AQRFLDGVQRDSARRSAPPSQAYVEEVVEEIRQGATTECPICLE 901

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER--------IGVTRQRQAGF----- 161
           S      L    + +      S W         + R        I +  Q +        
Sbjct: 902 SASDDPVLTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPENN 961

Query: 162 -KRAVFVYYLIAQNTIDELVLQRLRTKST 189
            K +  V  LI        +L+ L+ K  
Sbjct: 962 WKDSCKVIKLI-------KILEGLQEKRE 983


>gi|241634353|ref|XP_002410509.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215503438|gb|EEC12932.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1597

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 97   DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                I+ +N+    +  L      +   G NL  G N +V     W+        +   +
Sbjct: 1264 RKRWIEMFNDESNPRGRLFLISTKAGSLGTNL-VGANRVVLMDASWNPTH-----DVQAI 1317

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G K+ VF+Y  +AQ T++E +  R  TK ++   +++ 
Sbjct: 1318 FRVYRFGQKKPVFIYRFLAQGTMEEKIYDRQVTKQSLACRVVDE 1361


>gi|327286256|ref|XP_003227847.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 1310

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 65/240 (27%), Gaps = 56/240 (23%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           + Y KF       ++   +   +  ++     +L +                        
Sbjct: 367 EIYRKFI--SLDHIKELLMTTRSPLAELNILKKLCDHPRLLSARACSQLGLETSSCYDLD 424

Query: 43  -DEEKHWKEVH--------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR-- 83
            DE +    +H                K+  L  +++  +      +V       L    
Sbjct: 425 GDENEANDVLHQNIEHLSDQVLIEESGKLLFLVALLDRLQEEGHRTLVFSQSRKMLDIIE 484

Query: 84  ----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
                     ++         +++          +  +        G GL L      +V
Sbjct: 485 RILTRRRFKLMRIDGTVTHLTEREKRIGMFQKNSEYSVFLLTTQVGGVGLTLTA-ATRVV 543

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+        +   V R  + G K  V +Y LI   T++E + +R   K ++   
Sbjct: 544 IFDPSWNPAT-----DAQAVDRAYRIGQKANVVIYRLITCGTVEEKIYRRQVFKDSLIRQ 598


>gi|298705620|emb|CBJ28871.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1406

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 48  WKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDK 96
            ++    K++ L+V++E+  N   +++  +  + L  LQ                   D+
Sbjct: 738 CRDDTCGKMRTLKVLLERFKNKHKVLLFSYSTAMLDILQALCSSQGYTFLKLDGNTAKDQ 797

Query: 97  DPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               I  +   N  +  +      + G GLNLQ   + ++ + + W+  +     +    
Sbjct: 798 RQKMIDRFTKQNAIQNNVFLISTTAGGTGLNLQA-ASKVILYDVNWNPAQ-----DAQAE 851

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            R  + G  + V V+ L++  TI+EL   R   K       +   K E 
Sbjct: 852 DRAYRIGQLKEVEVFRLVSTGTIEELTYMRQIYKLQTSAATMGE-KAEG 899


>gi|327290056|ref|XP_003229740.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 697

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 51/228 (22%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------YDEEKHWKEVH--- 52
               ++   +   +  ++     +L +                   Y E      +    
Sbjct: 355 SLDHIKELLMTTRSPLAELTVLKKLCDHPRLLSAQACASLGLEVSEYSEPTDQSTLSMTQ 414

Query: 53  -------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG------ 91
                          K+  L  ++E  +      +V       L  ++    +       
Sbjct: 415 DIKRVSDKLLIEESGKLVFLVALLEKLQEEGHQTLVFSQSRKMLDIIEHILTKRSFRLMR 474

Query: 92  -----RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  L +    ++++  +    +        G GL L      +V F   W+     
Sbjct: 475 VDGTVTCLAEREKRVRQFQMDKSYSVFLLTTQVGGVGLTLTS-ATRVVIFDPSWNPAT-- 531

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +   V R  + G K  V +Y LI   T++E + +R   K ++   
Sbjct: 532 ---DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLIQQ 576


>gi|303388021|ref|XP_003072245.1| helicase DNA-binding protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301384|gb|ADM10885.1| helicase DNA-binding protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1225

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 68/261 (26%), Gaps = 70/261 (26%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-------KEVHD 53
           + Y     +    L +G    A N  +  ++  +           +         K+   
Sbjct: 521 RFYRAILEKNIEFLTKGGKESAPNLLNVMMELRKCCIHPYLIKGAEEQILSGYLKKKREK 580

Query: 54  EKIKALEVII--------------------------------------------EKANAA 69
            K +  E  I                                            +  N  
Sbjct: 581 NKAEGTENDITLTSEISNGDEQANGNTVIGDIDEYYKVFIQSSGKLVLLDKLLGKLKNGH 640

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE--GKIPLLFAHPA 117
            +++       L  L +     +   +              I  +++    + +      
Sbjct: 641 KVLIFSQMTRCLDLLAEYLTYRKYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLSTR 700

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    + ++ F   W+ +      +     R  + G    V VY L+ +NT +
Sbjct: 701 AGGVGINLTA-ADTVIIFDSDWNPQN-----DLQAQARCHRIGQTSEVKVYRLVTENTYE 754

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
             +  +   K  +   +L  +
Sbjct: 755 REMFDKAGLKLGLDRAVLQRM 775


>gi|255945291|ref|XP_002563413.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588148|emb|CAP86246.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 944

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
           K++    I+   F S L  ++                 T  +   +I+ +  +  + +  
Sbjct: 786 KSHTPKSIIFSQFTSMLQLVEWRLRHAGFNTVMLDGSMTPAQRQKSIEYFMTKADVEVFL 845

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G  LNL    + +     WW+     Q  +R       + G +R   V  L  +
Sbjct: 846 VSLKAGGVALNLTE-ASRVFIIDPWWNPAAEWQSADR-----SHRIGQQRPCVVTRLCIE 899

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           ++++  ++Q    K+ +    LN  +   + 
Sbjct: 900 DSVESRIIQLQEKKANLIRGTLNKDQAAALE 930


>gi|195382577|ref|XP_002050006.1| GJ20429 [Drosophila virilis]
 gi|194144803|gb|EDW61199.1| GJ20429 [Drosophila virilis]
          Length = 1034

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +K      +  +    + E+N    I L      +   G+NL  G N ++ F   W+   
Sbjct: 546 KKCLDGSTSSQERERLVNEFNANRNIKLFLISTRAGSLGINLT-GANRVIIFDASWNP-- 602

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                +   V R  + G  +  +VY ++    +++ +  R   K  + D +++    E
Sbjct: 603 ---CHDTQAVYRIYRYGQTKPCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDECNPE 657


>gi|154279660|ref|XP_001540643.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412586|gb|EDN07973.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 990

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     ++    +     N   ++V  H    L  LQ  F    
Sbjct: 578 RQLYATRDSILNYANHEFCGKWRVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 637

Query: 91  --------GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + +     +  +N   +  +      + G GLN+    N +V     W+ 
Sbjct: 638 YNVSYLDGAMSYEDRAKVVDNFNADVREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 696

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 697 A-----YDLQAQDRAYRIGQARDVEVFRLVSAGTIEEIVYARQIYKQQQAN 742


>gi|119498441|ref|XP_001265978.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119414142|gb|EAW24081.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 928

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
              KI+AL  I+    +A     +V   + S L  ++    +                +D
Sbjct: 755 PSSKIEALIKILTAQGQAPDTKTVVFSQWTSFLTLVEPHLQRHGIGYARIDGSMKSTARD 814

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +   + +  +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 815 ASTYKFSKDPQCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 868

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G KR   V+ L+ +NTI++ VL+   TK  + 
Sbjct: 869 RLGQKRETTVWRLVMENTIEDRVLEIQDTKRKLM 902


>gi|323705968|ref|ZP_08117539.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534766|gb|EGB24546.1| SNF2-related protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 930

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 32/215 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----DEKIK 57
           K Y +            N +  +      K ++L        ++             K++
Sbjct: 702 KLYCQLIENY-----KNNEKKESPLGVLQKLMELCAHPRLIQDDGDGDTYKFINESGKLQ 756

Query: 58  ALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWN 105
            L  I+ +        ++  H+      L+K              G         I ++ 
Sbjct: 757 RLIEIMNEIKLKGEKAVIFTHYIKMQTILRKVIMDVFGINCLVINGNIKGDRMSVIDKFR 816

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 ++     + G G+ +    N ++ ++  W+       +E+    R  + G  R 
Sbjct: 817 KSPGFNIIILSTRAAGVGITITE-ANNVIHYTRDWNPA-----VEKQATDRVYRIGQTRE 870

Query: 165 VFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLL 195
           V +YY I       T++E + + L+ K  + + ++
Sbjct: 871 VNIYYPICTSSRGKTVEERLNEVLQKKIQLLNEVI 905


>gi|147866122|emb|CAN83037.1| hypothetical protein VITISV_034336 [Vitis vinifera]
          Length = 1054

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 69/204 (33%), Gaps = 38/204 (18%)

Query: 27  SKTVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF 77
            + ++  +  +    +        EE         K+  L+ +++K   +   +++    
Sbjct: 411 VQVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIILDQLLQKLYNSGHRVLLFAQM 470

Query: 78  NSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKI-------------PLLFA 114
              L  LQ                   ++    I+ ++   +              +   
Sbjct: 471 THTLDILQDFMELRKYSYERLDGSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMI 530

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + ++F+   W+ +     +++  + R  + G    V    L+   
Sbjct: 531 STRAGGVGLNLVA-ADTVIFYEQDWNPQ-----VDKQALQRAHRIGQMNHVLSINLVTGR 584

Query: 175 TIDELVLQRLRTKSTIQDLLLNAL 198
           T++E++++R   K  +   ++  +
Sbjct: 585 TVEEIIMRRAERKLQLSHNVVGEV 608


>gi|169595490|ref|XP_001791169.1| hypothetical protein SNOG_00484 [Phaeosphaeria nodorum SN15]
 gi|160701103|gb|EAT91979.2| hypothetical protein SNOG_00484 [Phaeosphaeria nodorum SN15]
          Length = 1093

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 23/192 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +QY +  +     L+    E         + L       + + +K     H  ++  L  
Sbjct: 645 RQYRELYKNRDSILKQSQREFCGKWKVLRRLL----DFWHSNGDKVLIFSHSVRLLRLLR 700

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
            +   +      +Y                   +     + ++N +    +      + G
Sbjct: 701 GLFDIDGTKYNFSY------------LDGSMKYEDRSKVVADFNADPDQFVFLISTKAGG 748

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLN+    N +V     W+        +     R  + G  R V V+ L++  TI+E+V
Sbjct: 749 VGLNITS-ANKVVIVDPHWNPA-----YDLQAQDRAYRIGQTRDVEVFRLVSSGTIEEIV 802

Query: 181 LQRLRTKSTIQD 192
             R   K    +
Sbjct: 803 YARQIYKQQQAN 814


>gi|323508121|emb|CBQ67992.1| related to RAD16-nucleotide excision repair protein [Sporisorium
            reilianum]
          Length = 1659

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 17/152 (11%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQE 103
             K+      ++  +    +V   +   L R                           ++ 
Sbjct: 1473 GKLDQSLEALDSYDPVKSVVFSQWTKMLDRIQKSLNLTGIRYTRLDGTMKRPDRTAALEA 1532

Query: 104  WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  +  I +L     + G GLNL            +W+       +E  G+ R  + G  
Sbjct: 1533 FRTDPSIEVLLVSLRAGGTGLNLVSAC-RAYLMDPYWNPA-----VENQGLDRVHRMGQT 1586

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R V     I +++I+E +L+  + K  + + +
Sbjct: 1587 RPVITTKYIMRHSIEENMLRLQKRKMMLAEKV 1618


>gi|193848582|gb|ACF22767.1| SNF2P [Brachypodium distachyon]
          Length = 721

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 69/202 (34%), Gaps = 38/202 (18%)

Query: 28  KTVKCLQLANGAVYY-------DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN 78
           + ++  +  +    +        EE         K+  L++I++K +     +++     
Sbjct: 210 QVIQLRKACSHPYLFSGIEPEPYEEGEHLVQASGKLIVLDLILKKLHRLGHRVLLFAQMT 269

Query: 79  SDLAR----------LQKAFPQGRTLDKDPCTIQEW-------------NEGKIPLLFAH 115
             L              +        ++    I+++             N     +    
Sbjct: 270 HTLDILQDFLELRNYTYERLDGSVRAEERFAAIRKFSSQPTKGVARDDDNPSGAFVFMIS 329

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL  G + ++F+   W+ +      ++  + R  + G    V    L++Q T
Sbjct: 330 TRAGGVGLNL-IGADTVIFYEQDWNPQA-----DKQALQRAHRIGQLNHVLSINLVSQRT 383

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           I+E++++R   K  +   +   
Sbjct: 384 IEEVIMRRAERKLKLSHNIFGD 405


>gi|326918512|ref|XP_003205532.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Meleagris gallopavo]
          Length = 927

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 21/190 (11%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAY 75
           E++         + C Q     V   +    + +   K + LE ++   K     +++  
Sbjct: 721 EDMTVMTDFELHLLCKQY--SHVSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFS 778

Query: 76  HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
            F   L  L+      +                  I E+N +  I +      + G G+N
Sbjct: 779 QFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMGIFVFLLSTKAGGLGIN 838

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    N+++   +  +        ++    R  + G  R V V  LI++ TI+E +L+  
Sbjct: 839 LTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMN 892

Query: 185 RTKSTIQDLL 194
           + K  ++  +
Sbjct: 893 QQKLKLEQDM 902


>gi|323449444|gb|EGB05332.1| hypothetical protein AURANDRAFT_31163 [Aureococcus anophagefferens]
          Length = 281

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                          +    +  +N  +    +      + G GLNL  G + L+     
Sbjct: 171 RGWPAARLDGSTPAGERQGLVNAFNRPRSDAFVFLLSTRAGGCGLNL-VGASRLLLLDPD 229

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           W+        +   + R  + G  R V VY L+   T+DE +  R   K  + D ++
Sbjct: 230 WNPAA-----DEQAMARVWRDGQTRPVHVYRLLGAGTVDEKIFMRQLGKHDVNDGVV 281


>gi|302823493|ref|XP_002993399.1| hypothetical protein SELMODRAFT_40953 [Selaginella moellendorffii]
 gi|300138830|gb|EFJ05584.1| hypothetical protein SELMODRAFT_40953 [Selaginella moellendorffii]
          Length = 738

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
           +  K+ AL+ ++    +    +++  +    L  L+                  ++    
Sbjct: 419 NCGKMLALKNLLSKWTSQGDKVLLFSYSVRMLGILEKFLIRRGYCFCRLDGSTPMNARQG 478

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + E+N       +      + G GLNL    N +V F   W+  +     +     R  
Sbjct: 479 IVDEFNTSPSKQVVFLISTRAGGLGLNLVS-ANRVVVFDPNWNPAQ-----DLQAQDRSF 532

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G KR V V+ L+A  +++EL+  R   K  + +L +   +++
Sbjct: 533 RFGQKRHVTVFRLLAAGSLEELIYTRQIYKQQLFNLAVTGNREK 576


>gi|169616922|ref|XP_001801876.1| hypothetical protein SNOG_11638 [Phaeosphaeria nodorum SN15]
 gi|111060226|gb|EAT81346.1| hypothetical protein SNOG_11638 [Phaeosphaeria nodorum SN15]
          Length = 1020

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 65/210 (30%), Gaps = 34/210 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----E 64
            ++    L+ E     + A+K     +L               +   K   +  ++     
Sbjct: 815  KKTLAQLKKE--SLRSKAAKQKYLRRL-----------DRTWIPSAKTSKVVELLTDIKM 861

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLF 113
            K +    ++   F S L  ++    Q +   +                   ++    +L 
Sbjct: 862  KDSTEKTLIFSQFTSLLDLVEVPLVQHKFRYQRYDGSMTMDARADAVEAFMHDPNETILL 921

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   GLNL    + ++    +W+       +E   V R  +    R V V+ ++  
Sbjct: 922  VSLKAGNAGLNLWK-ASQVIMLDPFWNP-----FVEEQAVDRAHRMPQNREVHVHRVLVP 975

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             ++++ +      K  I    L+    + +
Sbjct: 976  ESVEDRICALQDKKREIIGAALDENASKGL 1005



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 6/52 (11%)

Query: 3   QYHKFQRELYCD----LQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHW 48
            Y   + +        L+  ++ A  +      ++  Q         +    
Sbjct: 569 IYKALEAKSRIQFNKYLKQNSVSANYACILVLLLRLRQACCHPHLIKDLSQP 620


>gi|167385507|ref|XP_001737376.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165899842|gb|EDR26336.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 764

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 79/237 (33%), Gaps = 50/237 (21%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           +K Y    +E    L  + ++   +        +L N      +    +++         
Sbjct: 449 IKLYKIMLKE----LDKKKLDQCGALKYIQLFTKLCNHPALISKYLMEEKISLNENDENC 504

Query: 53  ----------DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
                       K       I++    +   +++  ++   L   +  F Q         
Sbjct: 505 IKGVTINEESSNKFNITIQFIKEIIIKSKEKVVLVSNYTKTLDLFEMYFKQEEEYKQKKI 564

Query: 93  ----------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     +  +    +++ N+      +L     + G GLNL  G + L+ F   W+
Sbjct: 565 FNYLRLDGKTSQKQRDIIVEKINDKSSNFNILLLSSKAGGVGLNL-IGCSRLILFDPDWN 623

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     ++  + R  + G ++   +Y ++   TI+E + QR   K+ I + ++  
Sbjct: 624 PAK-----DKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQRQLQKNQISESIIEE 675


>gi|301092959|ref|XP_002997329.1| DNA repair protein, putative [Phytophthora infestans T30-4]
 gi|262110818|gb|EEY68870.1| DNA repair protein, putative [Phytophthora infestans T30-4]
          Length = 736

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 17/171 (9%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------ 91
             +            +  ++ LE++  +  +   I+   F + L  +Q     G      
Sbjct: 553 HRISDVHAFQSSTKIEALMQELELMRARDPSGKAIIFSQFVNMLDIIQHRLQLGGVKCVK 612

Query: 92  -----RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +D       ++  +        + G  LNL    + +     WW+      
Sbjct: 613 LSGNMSMSVRDRTIKAFRDDPTVTAFLISLKAGGVALNLT-VASHIFLMDPWWNPAA--- 668

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             E   + R  + G  + +     I   T++E +L+    K  I +  + A
Sbjct: 669 --ENQAIDRTHRLGQFKPIQATRFIIAGTVEERILKLQEKKRLIFEGTVGA 717


>gi|296123773|ref|YP_003631551.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
 gi|296016113|gb|ADG69352.1| SNF2-related protein [Planctomyces limnophilus DSM 3776]
          Length = 872

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL------ 81
           + + C   AN     D++   +    +++  +   + + +    IV   +   L      
Sbjct: 599 ELLYCRLAANSPELVDDQIVGESSKLDRLSEMFDEMFEGHFEKAIVFSEWTRMLDLIEPL 658

Query: 82  ----ARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                          +  +   ++ ++ +     +L A   +   GLNLQ   +I++   
Sbjct: 659 LDSRNLPYVRIDGQVSQRERAASVSQFEDDPGTRVLLAS-NAAATGLNLQA-ASIVINVD 716

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L W+    +Q I R       + G ++ V VY L+ + T +E +L+ L  K  +   +L+
Sbjct: 717 LPWNPAILEQRIAR-----AHRMGQEKPVQVYVLVTEETFEERLLKTLEGKEQLARAVLD 771

Query: 197 A 197
            
Sbjct: 772 E 772


>gi|24644932|ref|NP_524850.2| lodestar [Drosophila melanogaster]
 gi|30581024|sp|P34739|TTF2_DROME RecName: Full=Transcription termination factor 2; AltName:
            Full=Protein lodestar; AltName: Full=RNA polymerase II
            termination factor; AltName: Full=Transcription release
            factor 2
 gi|7298963|gb|AAF54167.1| lodestar [Drosophila melanogaster]
          Length = 1061

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 52   HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKD 97
               KI  +  I++    K++    IV   + S L  L+                  +   
Sbjct: 888  PSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNR 947

Query: 98   PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N+   +  +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 948  QDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 1001

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 1002 IYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAK 1045



 Score = 42.4 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++        + +++ +     ++  Q+         +   EE      H      
Sbjct: 767 YKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDT 826

Query: 59  LE-VIIEKANA 68
            E  ++ + N 
Sbjct: 827 PEIDLLAQLNK 837


>gi|237725527|ref|ZP_04556008.1| SNF2 family helicase [Bacteroides sp. D4]
 gi|229436214|gb|EEO46291.1| SNF2 family helicase [Bacteroides dorei 5_1_36/D4]
          Length = 632

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 20/201 (9%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK-- 65
                L+        S     +          V     K    V   K +    I+E+  
Sbjct: 411 NYLEALKDGMDTENPSLGMLQQLRIYCTHPYAVKDSSCKDDPSVVSVKYQRFCEIVEEII 470

Query: 66  ANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           +    +IV   +       +            +      ++   C + ++N    P +  
Sbjct: 471 SRKEKVIVFTSYKRMFEIFEEDIPVRFGIKIWSINGETPIEDRQCIVDKFNHLDEPAMLV 530

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                        G N ++ ++L W+        E     R  + G ++ VFVY L   +
Sbjct: 531 LNPRAAGTGLNITGANHIIHYNLEWNPSL-----EDQSSARAYRRGQEKTVFVYRLYYTD 585

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           T++E+V +R+  K  I    +
Sbjct: 586 TVEEVVNERIERKRDIASYAI 606


>gi|156839555|ref|XP_001643467.1| hypothetical protein Kpol_1006p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114079|gb|EDO15609.1| hypothetical protein Kpol_1006p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N     +      +
Sbjct: 595 KSIVFSQFTSMLDLVEWRLKRAGFETVKLQGSMSPTQRDETIKYFMNNINCEVFLVSLKA 654

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 655 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIES 708

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 709 RIIELQEKKANMIHATINQDEA 730


>gi|149244294|ref|XP_001526690.1| DNA repair protein RAD16 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449084|gb|EDK43340.1| DNA repair protein RAD16 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 902

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG-KI 109
            +    +    IV   F S L  ++    +            +  +   TI+ + +  ++
Sbjct: 742 KLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFQTAKLSGSMSPQQRDNTIKYFMDNTEV 801

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 802 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 855

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +++I+  +++    K+ + +  +N  + 
Sbjct: 856 FCIEDSIELKIIELQDKKANMINATINHDQA 886


>gi|327290729|ref|XP_003230074.1| PREDICTED: DNA excision repair protein ERCC-6-like [Anolis
           carolinensis]
          Length = 697

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 51/228 (22%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVY---------------YDEEKHWKEVH--- 52
               ++   +   +  ++     +L +                   Y E      +    
Sbjct: 355 SLDHIKELLMTTRSPLAELTVLKKLCDHPRLLSAQACANLGLEVSEYSEPTDQSTLSMTQ 414

Query: 53  -------------DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQG------ 91
                          K+  L  ++E  +      +V       L  ++    +       
Sbjct: 415 DIKRVSDKLLIEESGKLVFLVALLEKLQEEGHQTLVFSQSRKMLDIIEHILTKRSFRLMR 474

Query: 92  -----RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  L +    ++++  +    +        G GL L      +V F   W+     
Sbjct: 475 VDGTVTCLAEREKRVRQFQMDKSYSVFLLTTQVGGVGLTLTS-ATRVVIFDPSWNPAT-- 531

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +   V R  + G K  V +Y LI   T++E + +R   K ++   
Sbjct: 532 ---DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLIQQ 576


>gi|296805505|ref|XP_002843577.1| DNA repair protein RAD16 [Arthroderma otae CBS 113480]
 gi|238844879|gb|EEQ34541.1| DNA repair protein RAD16 [Arthroderma otae CBS 113480]
          Length = 867

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              IV   F S L  ++    +              + +        N+    +      
Sbjct: 713 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDHFMNDIDTEVFLVSLK 772

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 773 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 826

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 827 SRMVLLQEKKANMINGTINKGQSEALE 853


>gi|38567839|emb|CAE05788.2| OSJNBb0020J19.17 [Oryza sativa Japonica Group]
          Length = 1634

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +  +++   +    +++       L  +Q+                 + +    
Sbjct: 592 SCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRIDGTTKISERERI 651

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++ EG   P+        G GL L      ++     W+     Q ++R       + 
Sbjct: 652 VKDFQEGPGAPIFLLTTQVGGLGLTLTKAA-RVIVVDPAWNPSTDNQSVDR-----AYRI 705

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY L+   TI+E + +    K  +        ++
Sbjct: 706 GQMKDVIVYRLMTSGTIEEKIYKLQVFKGALFRTATEHKEQ 746



 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 64/242 (26%)

Query: 2    KQYHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            + Y  F      R     L+G ++EA           ++ +  +   +      +     
Sbjct: 1171 RLYEAFLNKDPVRSQTGALKGSSLEASTI------LRKICDHPLLLTKRDTDDFLEEMGA 1224

Query: 52   --HDEKIKALEVIIEKA-----------------------------NAAPIIVAYHFNSD 80
              ++  +  +E I+E                                   +++       
Sbjct: 1225 MLNNRDMCMVERILEDNLYADKRLQIVQGASCKIAFILPLLRNLVEEGHYVLIFSQTRVM 1284

Query: 81   LARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGG 129
            L  +Q                  + +    ++++ EG   P+L       G G  L    
Sbjct: 1285 LNLIQDAVSIEGHKFLRIDGTTKISERKKILKDFQEGLDSPILLLTSHVGGLGNTLTK-A 1343

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++     W+       I+   V R  + G  + V VY L+   TI+E + ++   K  
Sbjct: 1344 DRVIVVDPAWNPS-----IDNQSVDRAYRIGQTKDVIVYRLVTCGTIEEKIYKQQIFKGG 1398

Query: 190  IQ 191
            + 
Sbjct: 1399 LF 1400


>gi|325092609|gb|EGC45919.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 1032

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     ++    +     N   ++V  H    L  LQ  F    
Sbjct: 596 RQLYATRDSILNYANHEFCGKWRVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 655

Query: 91  --------GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + +     +  +N   +  +      + G GLN+    N +V     W+ 
Sbjct: 656 YNVSYLDGAMSYEDRAKVVDNFNADIREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 714

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 715 A-----YDLQAQDRAYRIGQARDVEVFRLVSAGTIEEIVYARQIYKQQQAN 760


>gi|123421883|ref|XP_001306074.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
 gi|121887628|gb|EAX93144.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
          Length = 1483

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 47/240 (19%)

Query: 4   YHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE- 60
           Y     +    L     +    N  + +++  ++ N     +  +    +  + +  ++ 
Sbjct: 458 YQSIYSKNMEYLHRGAHSSNTTNLQNISMELRKVCNHPYLINGAEDQIIIERKAMMNIDP 517

Query: 61  --------------------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
                                     +   KAN   +++       L  +Q         
Sbjct: 518 DVKPDLTFEYESLIRSSGKMILLDKLLAKLKANGHRVLLFSQMTKMLDIIQDYLVYKGYK 577

Query: 95  DKD----------PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +              I ++NE      +      + G G+NL    + ++ +   W+ +
Sbjct: 578 FERLDGSVKSEIRQGMIDKFNEEGSEDFIFLLCTKAGGLGINLTS-ADTVIIYDSDWNPQ 636

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                 +     R  + G K+ V VY L+   + +  +      K  +   +L   K + 
Sbjct: 637 N-----DLQATARAHRIGQKKNVKVYRLLTAKSYERKMFDTAAIKLGLDQAVLENTKDKP 691


>gi|157103789|ref|XP_001648131.1| helicase [Aedes aegypti]
 gi|108880486|gb|EAT44711.1| helicase [Aedes aegypti]
          Length = 707

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 65/210 (30%), Gaps = 27/210 (12%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKAL 59
             R++           +   +      Q+        EE   +            ++  L
Sbjct: 392 LCRDVRLLKGDGTYTKYMMRNIFPHLRQVTLHPYLIPEESEEETFVTQEIVDVSSRMIVL 451

Query: 60  EVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
           + ++++ +   + +++       L  L+                   ++    I E+N  
Sbjct: 452 DKLLDELHKRGSRVLLFSQMVIMLNVLEDYMEWKGYKYHRMTGTTQQEERQAMIDEFNSP 511

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G G+NLQ   + ++F+ L W+ +      +     R  + G  + V
Sbjct: 512 GSDTFIFMITTRTGGIGINLQT-ADTVIFYDLDWNPQA-----DFQAEDRAHRIGQTKQV 565

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            V       T+DE V      K  +   ++
Sbjct: 566 HVIRFTVVGTVDEYVHVCSNRKQALDKAIV 595


>gi|145494324|ref|XP_001433156.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400273|emb|CAK65759.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1030

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEV------HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N    +        +        
Sbjct: 618 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRITDEIWRSS 677

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K + L+ II K       +++       +  ++  F                +     I
Sbjct: 678 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAYFEYRGWRYLRLDGSTKSEDRETRI 737

Query: 102 QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + +N       +      + G GLNLQ   + +V F   W+      M++     R  + 
Sbjct: 738 KLFNQENSIYNIFLLSTRAGGLGLNLQS-ADTVVLFDSDWNP-----MMDLQAQDRAYRI 791

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 792 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAIIIQA 829


>gi|224004522|ref|XP_002295912.1| ATP-dependent helicase [Thalassiosira pseudonana CCMP1335]
 gi|209585944|gb|ACI64629.1| ATP-dependent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 841

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 53  DEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKA-FPQGRTLDK---------DPCT 100
             K+K L+  + K       ++V  +  + L  +Q+    QG T  +             
Sbjct: 410 SGKMKTLDYCLRKYQKKRHRVLVFSYSTATLDLIQQHVKTQGWTHLRLDGQTATSTRQAL 469

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +  I +      + G GLNL    N ++ F + W+        +     R  + 
Sbjct: 470 VDQFQRDQAIFVFLISTRAGGLGLNLTA-ANKVIIFDVNWNPS-----YDEQAQDRSFRI 523

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G ++ V V  L+A+ TI+E +  R   K+ ++   L 
Sbjct: 524 GQEKNVEVLRLVARGTIEEQMYARQVYKTQLKKQTLG 560


>gi|115334572|dbj|BAF33276.1| chromodomain helicase DNA binding protein 1 [Eudromia elegans]
          Length = 301

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 34  RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 87

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 88  RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 131


>gi|47217489|emb|CAG10869.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 861

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA--- 82
           +  +  Q  +  +   +      +   K   L+ ++   K     +++   F   L    
Sbjct: 664 ELHRLCQQYSS-ISSYQLDTDLLLDSGKFILLKELLTSLKKKGDRVVLFSQFTMMLDIIE 722

Query: 83  -------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             +      I E+N +  I +      + G G+NL    N+++ 
Sbjct: 723 VLLKHLSHRYIRLDGSTPIADRIVLIDEYNTDSDIFVFLLSTRAGGLGINLTS-ANVVIL 781

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +        ++    R  + G  R V V  LI++ TIDE +LQ  + K  ++  +
Sbjct: 782 HDIDCNP-----YNDKQAEDRCHRVGQTRTVRVIKLISKGTIDECILQLGQKKLKLEHDM 836


>gi|68468463|ref|XP_721791.1| hypothetical protein CaO19.1720 [Candida albicans SC5314]
 gi|68468704|ref|XP_721671.1| hypothetical protein CaO19.9288 [Candida albicans SC5314]
 gi|46443600|gb|EAL02881.1| hypothetical protein CaO19.9288 [Candida albicans SC5314]
 gi|46443729|gb|EAL03009.1| hypothetical protein CaO19.1720 [Candida albicans SC5314]
          Length = 864

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 69/189 (36%), Gaps = 26/189 (13%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           K ++   + N    Y       +     +  K + L  ++    ++   +++   F   L
Sbjct: 581 KMIQLRNICNSPFIYYNYPILDQAEVIRNSAKFQVLNQLLPPLLSSGHKVLIFAQFTKVL 640

Query: 82  ARLQKAFPQGR--------------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             L+    +                   +D    Q  N  K  +  +   + G G+NL  
Sbjct: 641 DLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSSTRAGGLGINLVA 700

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + ++     W+ +     ++   + R  + G    V ++  + +++I+E+++ R  +K
Sbjct: 701 -ADTVILMDNDWNPQ-----MDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLISRSGSK 754

Query: 188 STIQDLLLN 196
             ++ L++ 
Sbjct: 755 RFLERLVIQ 763


>gi|326671144|ref|XP_691636.4| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Danio rerio]
          Length = 1020

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQ 85
           +  +  Q  + A++  +      +   K+  L  ++   K     +++   F   L  L+
Sbjct: 823 ELHRLCQQYS-ALHEYQLNTDVLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILE 881

Query: 86  KAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                 +           +      I ++N +  I +      + G G+NL    N+++ 
Sbjct: 882 VFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDIFVFLLSTRAGGLGINLTS-ANVVIL 940

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +        ++    R  + G  + V V  LI++++I++ +L+    K  ++  +
Sbjct: 941 HDIDCNP-----YNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERKLKLEQEM 995


>gi|219118975|ref|XP_002180254.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408511|gb|EEC48445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 126

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F +              +D+    +  +N + K+        S G G+NL  G + ++F+
Sbjct: 18  FLNLNGHTYLRLDGSTGVDRRQRLMDRFNNDPKLFCFILSTRSGGLGINLT-GADSVIFY 76

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              W+       ++     R  + G  R V +Y  + ++TI+E +L + + K  +
Sbjct: 77  DSDWNPA-----MDAQAQDRAHRIGQTRDVHIYRFVTEHTIEENILVKAQQKRNL 126


>gi|323441318|gb|EGA98983.1| phage helicase [Staphylococcus aureus O46]
          Length = 128

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 6/130 (4%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + Y+F  D  R+ + F +  T  +D    + WN G I LL AHPAS GHGLNLQ GG+I+
Sbjct: 1   MFYNFKHDKERILERFKEATT-LEDSNYKERWNSGNIKLLIAHPASAGHGLNLQQGGHII 59

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V+F L W LE +Q         R  + G      +++L+  NTID+ V + L+ K   Q+
Sbjct: 60  VWFGLTWSLELYQ-----QANARLYRQGQNHTTIIHHLMTDNTIDQRVYKALQNKELTQE 114

Query: 193 LLLNALKKET 202
            L+ A+K   
Sbjct: 115 ELMKAIKARI 124


>gi|190345081|gb|EDK36901.2| hypothetical protein PGUG_00999 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 542

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLD-------- 95
           +  + ++  K+  L   I++  A     +V   F   L  L+K    G            
Sbjct: 370 EDKEWLNSGKVGLLMDHIKEIMARKERVLVFSLFTQMLDILEKVLTIGNIKFLRLDGQTS 429

Query: 96  ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +       +++  IP+      + G G+NL    N +V F   ++  +     +R  
Sbjct: 430 VDTRQDLIDTFYDDDTIPVFLLSTKAGGFGINLVA-ANNVVIFDQSFNPHD-----DRQA 483

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G    V V   I++ TI+E +LQ    K  +  
Sbjct: 484 EDRAHRVGQTSEVLVTRFISKGTIEENMLQLAENKLQLDQ 523


>gi|325180152|emb|CCA14554.1| ATPdependent helicase putative [Albugo laibachii Nc14]
          Length = 945

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 19/164 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           +   K   L+  + K       +++   +   L  L+                  ++   
Sbjct: 744 LDSAKFHYLDTQLPKLKQEGHRVLIFSQWTKLLDLLEVLMKHKQYRFLRLDGSTMVETRQ 803

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+N +  I +      + G G+NL    + ++   L ++        +     R  
Sbjct: 804 QLIDEYNSDQDIFVFLLSTRAGGLGINLTA-ADTVILHDLDFNPTN-----DEQACDRCH 857

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G  R V +Y L+A+NT+D  + +    K  +   +L  L  E
Sbjct: 858 RIGQTRPVSIYKLVAENTVDHDIYKLGEVKRQLNHAVLGNLNDE 901


>gi|146418040|ref|XP_001484986.1| hypothetical protein PGUG_02715 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1155

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 24/179 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQK 86
            +++ +  +        I  L+ I E++    ++V   F+S L                  
Sbjct: 969  IFHYDPDNGSSKIQALILHLQQIQEQSPGERVVVFSQFSSYLDLIENELKVQGSDIFHVV 1028

Query: 87   AFPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             F     + +    I+ +N      ++ +L     + G GLNL    +       WW   
Sbjct: 1029 KFDGRLKMHERNQLIESFNNDDTSPRVSILLLSLKAGGVGLNLTS-ASRAFMMDPWWSPS 1087

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               Q I+RI      + G  R V V   I Q +I+E +L+    K  I + +  A ++E
Sbjct: 1088 VEDQAIDRI-----HRIGQVRNVKVTRFIIQESIEEKMLKIQERKKQIGEAV-GADEQE 1140


>gi|85000227|ref|XP_954832.1| global transcription activator, SNF2 family member [Theileria
           annulata strain Ankara]
 gi|65302978|emb|CAI75356.1| global transcription activator, SNF2 family member, putative
           [Theileria annulata]
          Length = 1162

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 25/174 (14%)

Query: 28  KTVKCLQLANGAVY-----YDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
           K ++  ++ N         +            K+  L++I+ +       +++     S 
Sbjct: 646 KFLQLRKICNHPFLYVNNNFIPCNDLIINSSGKMCILDMILSRLYYVNHRVLIFSQMTSL 705

Query: 81  LARLQKAFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  L+                    K    I  +NE      +      +   G+NLQ  
Sbjct: 706 LDILEVYLNYRSYKYLRLDGNLSSEKRLERINLFNEPDSQYFVFILSTKAGSLGINLQS- 764

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + ++ +   W+ +      +    +R  + G K  V    LI  NTI++ + +
Sbjct: 765 ADTVIIYDSDWNPQN-----DLQAQSRVHRIGQKNQVITLRLITPNTIEDNIYR 813


>gi|302695141|ref|XP_003037249.1| hypothetical protein SCHCODRAFT_73063 [Schizophyllum commune H4-8]
 gi|300110946|gb|EFJ02347.1| hypothetical protein SCHCODRAFT_73063 [Schizophyllum commune H4-8]
          Length = 1205

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 70   PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              +V   + + L            R  +     +  D+         +    +L     +
Sbjct: 1052 KTVVFSQWTTMLDKIEEALDVAGIRYDRLDGTMKRDDRTRAMDALKYDPGCEVLLVSLKA 1111

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL    + +     +W+     Q ++RI      + G  R V    LI +NTI+ 
Sbjct: 1112 GGVGLNLTA-ASRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVTTVKLIIENTIEA 1165

Query: 179  LVLQRLRTKSTIQDLLLNAL---KKETIH 204
             +L+  + K+ + ++ L+     K E + 
Sbjct: 1166 RLLEVQKKKTALANMTLDRQSFSKAELMQ 1194


>gi|303323511|ref|XP_003071747.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111449|gb|EER29602.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1011

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     + ++N + +  +  
Sbjct: 611 HANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFNADPRQFVFL 670

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G +R V V+ L++ 
Sbjct: 671 ISTKAGGVGLNITS-ANKVVVVDPNWNPSH-----DLQAQDRAYRIGQRRDVEVFRLVSA 724

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 725 GTIEEIVYARQIYKQQQAN 743


>gi|222629845|gb|EEE61977.1| hypothetical protein OsJ_16754 [Oryza sativa Japonica Group]
          Length = 1678

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +  +++   +    +++       L  +Q+                 + +    
Sbjct: 637 SCKLSFMMSLLQNLVSEGHNVLIFSQTRKMLNIIQEAIILEGYKFLRIDGTTKISERERI 696

Query: 101 IQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++++ EG   P+        G GL L      ++     W+     Q ++R       + 
Sbjct: 697 VKDFQEGPGAPIFLLTTQVGGLGLTLTKAA-RVIVVDPAWNPSTDNQSVDR-----AYRI 750

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY L+   TI+E + +    K  +        ++
Sbjct: 751 GQMKDVIVYRLMTSGTIEEKIYKLQVFKGALFRTATEHKEQ 791



 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 64/242 (26%)

Query: 2    KQYHKF-----QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----- 51
            + Y  F      R     L+G ++EA           ++ +  +   +      +     
Sbjct: 1215 RLYEAFLNKDPVRSQTGALKGSSLEASTI------LRKICDHPLLLTKRDTDDFLEEMGA 1268

Query: 52   --HDEKIKALEVIIEKA-----------------------------NAAPIIVAYHFNSD 80
              ++  +  +E I+E                                   +++       
Sbjct: 1269 MLNNRDMCMVERILEDNLYADKRLQIVQGASCKIAFILPLLRNLVEEGHYVLIFSQTRVM 1328

Query: 81   LARLQK----------AFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGG 129
            L  +Q                  + +    ++++ EG   P+L       G G  L    
Sbjct: 1329 LNLIQDAVSIEGHKFLRIDGTTKISERKKILKDFQEGLDSPILLLTSHVGGLGNTLTK-A 1387

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++     W+       I+   V R  + G  + V VY L+   TI+E + ++   K  
Sbjct: 1388 DRVIVVDPAWNPS-----IDNQSVDRAYRIGQTKDVIVYRLVTCGTIEEKIYKQQIFKGG 1442

Query: 190  IQ 191
            + 
Sbjct: 1443 LF 1444


>gi|326477312|gb|EGE01322.1| DNA repair protein RAD16 [Trichophyton equinum CBS 127.97]
          Length = 947

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  +       +      
Sbjct: 793 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMQNVDTEVFLVSLK 852

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 853 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 906

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 907 SRMVLLQEKKANMINGTINKDQSEALE 933


>gi|224008985|ref|XP_002293451.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970851|gb|EED89187.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 543

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 75/236 (31%), Gaps = 53/236 (22%)

Query: 3   QYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
            Y      + +   L G+ +    S    +K     N       EK              
Sbjct: 280 MYAHLCNSKAMQHVLDGKQVNCLGSIQMLMKL---CNHPSLVVNEKSSAAPGADGIAKFM 336

Query: 53  -----------------DEKIKALEVIIEKA-----NAAPIIVAYHFNSDLARLQKAFPQ 90
                              K+  L  ++ +          I++  ++   L  + +   +
Sbjct: 337 PYEAIRGDRNAPVMPELSGKMFVLFRLMREMRRPGNGNDKIVIVSNYTQTLDLIGRMCRE 396

Query: 91  ----------GRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLW 138
                       ++ K      E+N+    L        + G GLNL  GGN LV F   
Sbjct: 397 NNWGFCRLDGSISMKKRQKMCDEFNDPSSSLVAFLLSSKAGGCGLNL-IGGNRLVLFDPD 455

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           W+       +++    R  + G K+  F Y  +A  T++E + QR  +K  +Q ++
Sbjct: 456 WNPA-----VDKQAAARCWRDGQKKRCFTYRFLATGTVEEKIFQRQLSKEGLQSVV 506


>gi|195028444|ref|XP_001987086.1| GH20163 [Drosophila grimshawi]
 gi|193903086|gb|EDW01953.1| GH20163 [Drosophila grimshawi]
          Length = 1645

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +  +    + E+N    I L      +   G+NL  G N ++ F   
Sbjct: 1030 MRNVSYFRLDGSTSSQERERLVNEFNANRNIKLFLISTRAGSLGINLT-GANRVIIFDAS 1088

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            W+        +   V R  + G  +  +VY ++    +++ +  R   K  + D +++  
Sbjct: 1089 WNP-----CHDTQAVYRIYRYGQTKQCYVYRIVMDKCLEKKIYDRQIKKQGMSDRIVDEC 1143

Query: 199  KKE 201
              E
Sbjct: 1144 NPE 1146


>gi|85102654|ref|XP_961377.1| DNA repair protein RAD16 [Neurospora crassa OR74A]
 gi|16944468|emb|CAC18166.2| probable nucleotide exsicion repair protein RAD16 [Neurospora crassa]
 gi|28922921|gb|EAA32141.1| DNA repair protein RAD16 [Neurospora crassa OR74A]
          Length = 1079

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            +  L  +     +   I+   F + L  ++                 T  +   +I  + 
Sbjct: 913  VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASINHFM 972

Query: 106  -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 973  TNVDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQSRP 1026

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  L  +++++  ++     K+ + +  +NA
Sbjct: 1027 CTITRLCIEDSVESRMVLLQEKKTNMINSTINA 1059


>gi|328862898|gb|EGG11998.1| hypothetical protein MELLADRAFT_76519 [Melampsora larici-populina
           98AG31]
          Length = 779

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 23/169 (13%)

Query: 53  DEKIKALEVIIEK------ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
             KI  L  ++++            IV   F S L  ++    + +              
Sbjct: 604 STKISRLLELLDEIASESSEKPKKTIVFSQFTSFLDLIEPFIKKAKHGYARYDGAKTADE 663

Query: 98  --PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +  ++ K  +L         GLNL    + +V    WW+       IE     R
Sbjct: 664 KAEALNKIKHDPKCTVLLISLRCGSVGLNL-ICCSRVVLMDPWWNPS-----IESQAFDR 717

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + G +  V  Y +   +TI++ +L+    K +I +  L     + ++
Sbjct: 718 AHRFGQRDDVKCYKITIADTIEDRILKLQEDKQSIANQALGTEAAKKMN 766


>gi|119188869|ref|XP_001245041.1| hypothetical protein CIMG_04482 [Coccidioides immitis RS]
          Length = 1011

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     + ++N + +  +  
Sbjct: 611 HANGDKVLVFSHSVRLLRMLQMLFNHTSYNVSYLDGTMSYEDRAKVVDDFNADPRQFVFL 670

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G +R V V+ L++ 
Sbjct: 671 ISTKAGGVGLNITS-ANKVVVVDPNWNPSH-----DLQAQDRAYRIGQRRDVEVFRLVSA 724

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 725 GTIEEIVYARQIYKQQQAN 743


>gi|326472991|gb|EGD97000.1| DNA repair protein RAD16 [Trichophyton tonsurans CBS 112818]
          Length = 947

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  +       +      
Sbjct: 793 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMQNVDTEVFLVSLK 852

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 853 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 906

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 907 SRMVLLQEKKANMINGTINKDQSEALE 933


>gi|302916069|ref|XP_003051845.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
 gi|256732784|gb|EEU46132.1| hypothetical protein NECHADRAFT_106058 [Nectria haematococca mpVI
            77-13-4]
          Length = 1919

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                  R          ++     I+ +NEG   +      + G GLN+  G N +V F 
Sbjct: 1316 MCKMQLRTISRLDGSTAVESRQEEIKRFNEGSKEVYLISTTAGGVGLNIH-GANRVVIFD 1374

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + W+    QQ I R       + G K+ VFVY+L    T ++++  +   K  +   +++
Sbjct: 1375 IKWNPTVEQQGIGR-----AYRLGQKKPVFVYWLTTAGTFEQIIHNQHVFKQQLAARVVD 1429


>gi|50554893|ref|XP_504855.1| YALI0F01232p [Yarrowia lipolytica]
 gi|49650725|emb|CAG77657.1| YALI0F01232p [Yarrowia lipolytica]
          Length = 844

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDK 96
              KI+AL   + K          IV   F S L  ++                     +
Sbjct: 671 SSTKIEALVEELYKLRSDRQTIKSIVFSQFTSMLDLVEWRLRRAGFQTVKLQGNMSPTQR 730

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                      ++ +      + G  LNL    + +     WW+     Q  +R+     
Sbjct: 731 QNSIKYFMENPQVEVFLVSLKAGGVALNL-CEASQVFILDPWWNPSVEWQSGDRV----- 784

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V +     +++I+  +++    K+++    L 
Sbjct: 785 HRIGQHRPVKITRFAIEDSIESRIIELQEKKASMIHATLG 824


>gi|323338667|gb|EGA79883.1| Rad16p [Saccharomyces cerevisiae Vin13]
          Length = 611

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 460 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 519

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 520 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 573

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 574 RIIELQEKKANMIHATINQDEA 595


>gi|321255221|ref|XP_003193350.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Cryptococcus gattii
           WM276]
 gi|317459820|gb|ADV21563.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, putative [Cryptococcus
           gattii WM276]
          Length = 899

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 25/179 (13%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLA----------RLQKAFPQ 90
           Y      + ++  KI  L   +         +V   F S L                F  
Sbjct: 707 YIPSSQARSINSAKIDELVKYLRIFPRNDKTLVFSQFTSFLDCVGVRLEEEGIKFVRFDG 766

Query: 91  GRTLDKDPCTIQEWNEG--------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             +  +    I+ + E            ++     S   GLNL    + +     WW   
Sbjct: 767 RMSGKQRTAVIKTFQEPVKGDDDEKTPKVMLISLKSGAVGLNLTA-ASNVFLCDPWW--- 822

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             Q  IE   + R  + G K+ V V+ LIA+NTI+  VL   + K  +         KE
Sbjct: 823 --QSAIEAQAIDRAHRMGQKKIVRVFQLIAENTIESSVLDIQKRKDAMVAKAFEKSSKE 879


>gi|307206570|gb|EFN84572.1| TATA-binding protein-associated factor 172 [Harpegnathos saltator]
          Length = 318

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +K     QL        + +  +              +  +    ++     + L  ++K
Sbjct: 65  AKLPALKQLLLDCGIGQQNQQARGSSSTTSTDSTQQQQLVSQHRALIFCQLKAMLDIVEK 124

Query: 87  AFPQGR-------------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +                  +    +  +N +  I +L       G GLNL  G + +
Sbjct: 125 DLLRMHLPTVTYLRLDGSIPAAQRHSVVARFNADPSIDVLLLTTQVGGLGLNLT-GADTV 183

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +F    W+      M +   + R  + G K+ V VY LI ++T++E ++   + K    +
Sbjct: 184 IFVEHDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLTAN 238

Query: 193 LLLN 196
            +++
Sbjct: 239 TVIS 242


>gi|195344346|ref|XP_002038749.1| GM10987 [Drosophila sechellia]
 gi|194133770|gb|EDW55286.1| GM10987 [Drosophila sechellia]
          Length = 286

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKD 97
              KI  +  I++    K++    IV   + S L  L+                  +   
Sbjct: 113 PSSKINMVIQILKTTILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNR 172

Query: 98  PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + E+N+   +  +L     + G GLNL  G N L+   L W+ +      E     R
Sbjct: 173 QDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWNPQL-----EAQAQDR 226

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 227 IYRVGQKKNVIIYKFMCVDTVEQRIKALQDKKLDLADGVLTGAK 270



 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 17 GENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKALE-VIIEKANA 68
           + +++ +     ++  Q+         +   EE      H       E  ++ + N 
Sbjct: 5  KKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQSMGDHSSDSDTPEIDLLAQLNK 62


>gi|118090021|ref|XP_420485.2| PREDICTED: similar to helicase SMARCAD1 [Gallus gallus]
          Length = 969

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 21/190 (11%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAY 75
           E++         + C Q     V   +    + +   K + LE ++   K     +++  
Sbjct: 763 EDMTVMTDFELHLLCKQY--SHVSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFS 820

Query: 76  HFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
            F   L  L+      +                  I E+N +  I +      + G G+N
Sbjct: 821 QFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMDIFVFLLSTKAGGLGIN 880

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    N+++   +  +        ++    R  + G  R V V  LI++ TI+E +L+  
Sbjct: 881 LTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMN 934

Query: 185 RTKSTIQDLL 194
           + K  ++  +
Sbjct: 935 QQKLKLEQDM 944


>gi|172320|gb|AAA34930.1| excision repair protein [Saccharomyces cerevisiae]
          Length = 392

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 241 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 300

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 301 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 354

Query: 179 LVLQRLRTKSTIQDLLLNALKK 200
            +++    K+ +    +N  + 
Sbjct: 355 RIIELQEKKANMIHATINQDEA 376


>gi|146423386|ref|XP_001487622.1| hypothetical protein PGUG_00999 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 542

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPI--IVAYHFNSDLARLQKAFPQGRTLD-------- 95
           +  + ++  K+  L   I++  A     +V   F   L  L+K    G            
Sbjct: 370 EDKEWLNSGKVGLLMDHIKEIMARKERVLVFSLFTQMLDILEKVLTIGNIKFLRLDGQTS 429

Query: 96  ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +       +++  IP+      + G G+NL    N +V F   ++  +     +R  
Sbjct: 430 VDTRQDLIDTFYDDDTIPVFLLSTKAGGFGINLVA-ANNVVIFDQSFNPHD-----DRQA 483

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R  + G    V V   I++ TI+E +LQ    K  +  
Sbjct: 484 EDRAHRVGQTSEVLVTRFISKGTIEENMLQLAENKLQLDQ 523


>gi|224098212|ref|XP_002194690.1| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency, complementation group 6-like
           [Taeniopygia guttata]
          Length = 1170

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 6/122 (4%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                 L+         +++             +        G G+ L    + +V F  
Sbjct: 507 RRQFQILRIDGTVTHLTERERRINAFQTNTTYSVFLLTTQVGGVGITLTA-ASRVVIFDP 565

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   V R  + G K  V +Y LI   T++E + +R   K ++       
Sbjct: 566 SWNPAT-----DAQAVDRAYRIGQKENVVIYRLITCGTVEEKIYRRQVFKDSLIRQTTGD 620

Query: 198 LK 199
            K
Sbjct: 621 KK 622


>gi|207345463|gb|EDZ72281.1| YGL163Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 405

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 71/219 (32%), Gaps = 43/219 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------- 45
           + Y+K  +        + +             +L N     + E                
Sbjct: 175 ELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYN 234

Query: 46  ------KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR---- 92
                 +  +  +  K   LE  + K    +   I++  ++   L  ++K          
Sbjct: 235 MPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV 294

Query: 93  ------TLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 +++K    +  +N+ +    +      + G G+NL  G N L+     W+    
Sbjct: 295 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINL-IGANRLILMDPDWNPAAD 353

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q       + R  + G K+  F+Y  I+  TI+E +L +
Sbjct: 354 Q-----QALARVWRDGQKKDCFIYRFISTGTIEEKILSK 387


>gi|154488700|ref|ZP_02029549.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
 gi|154082837|gb|EDN81882.1| hypothetical protein BIFADO_02007 [Bifidobacterium adolescentis
           L2-32]
          Length = 721

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 17/154 (11%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCT 100
               K K L  IIE+  +    ++V   +   + ++                T  +    
Sbjct: 515 KDSGKAKRLLEIIEEAKSEGRKVLVFSFYLDTIRKIADMLGSQCTEPINGSITPTRRQEI 574

Query: 101 IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I ++       +L A   + G GLN+Q   ++++              IE   ++R  + 
Sbjct: 575 IDDFDKAPAGQVLVAQIVAGGTGLNIQS-ASVVIICEPQLKPS-----IENQAISRAYRM 628

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           G  R V VY L+A+NTIDE +   L  K  + + 
Sbjct: 629 GQARNVLVYRLLAENTIDEKITDILARKQEVFNA 662


>gi|322799536|gb|EFZ20844.1| hypothetical protein SINV_13363 [Solenopsis invicta]
          Length = 305

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             +    +  +N +  I +L       G GLNL  G + ++F  
Sbjct: 87  THLPTVTYLRLDGSVPATQRHSVVARFNADPSIDVLLLTTQVGGLGLNLT-GADTVIFVE 145

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+      M +   + R  + G K+ V VY LI + T++E ++   + K    + +++
Sbjct: 146 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRATVEEKIMGLQKFKLLTANTIIS 200


>gi|215693288|dbj|BAG88670.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 607

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----- 94
              D EK+W E         E+ + + + A  I+   + + L  LQ    +         
Sbjct: 429 FQIDVEKNWVESSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLSRHNFSFARLD 488

Query: 95  -----DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +    I+E+  +  I +L     + G G+NL    +       WW+    +Q I
Sbjct: 489 GTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAI 547

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            RI      + G  ++V +   I + T++E +      K  +    L
Sbjct: 548 MRI-----HRIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGAL 589



 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/193 (7%), Positives = 43/193 (22%), Gaps = 28/193 (14%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    +     ++  Q  +           +E  D    
Sbjct: 275 YDALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVLSRGDTQEFADLNKL 334

Query: 58  ALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           A   +       N    + +  +  ++ +  +       +      ++ + +        
Sbjct: 335 AKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKGEGECPI-----CLEAFED-----AVL 384

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            P +                 S W         + R  +++Q              + +N
Sbjct: 385 TPCAHRLCRE--------CLLSSWRSASAGLCPVCRKSMSKQDLITAPTDNRFQIDVEKN 436

Query: 175 TID-ELVLQRLRT 186
            ++   +   L+ 
Sbjct: 437 WVESSKISFLLQE 449


>gi|307199888|gb|EFN80285.1| DNA repair and recombination protein RAD54B [Harpegnathos saltator]
          Length = 509

 Score = 79.8 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 97  DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I+++N    +  +L     + G GLNL  G + LV F   W+     Q + RI   
Sbjct: 299 RSKVIEQFNTKTDESKILLLSAKAGGVGLNL-PGASRLVLFDSDWNPASDMQAMARIW-- 355

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V++Y L+   TI+E + QR  +K+ + + +++
Sbjct: 356 ---RDGQKKDVYIYRLLTTGTIEEKIYQRQISKAGLSEFVVD 394


>gi|225562673|gb|EEH10952.1| CHR9/SNF2/SWI2 [Ajellomyces capsulatus G186AR]
          Length = 1032

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     ++    +     N   ++V  H    L  LQ  F    
Sbjct: 596 RQLYATRDSILNYANHEFCGKWRVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 655

Query: 91  --------GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + +     +  +N   +  +      + G GLN+    N +V     W+ 
Sbjct: 656 YNVSYLDGAMSYEDRAKVVDHFNADIREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 714

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 715 A-----YDLQAQDRAYRIGQARDVEVFRLVSAGTIEEIVYARQIYKQQQAN 760


>gi|198423144|ref|XP_002119349.1| PREDICTED: similar to transcriptional regulator ATRX [Ciona
           intestinalis]
          Length = 1357

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 71/203 (34%), Gaps = 19/203 (9%)

Query: 8   QRELYCDLQGENIE-------AFNSASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKA 58
           + E Y  + G+++              + ++     +  +    +       + +    +
Sbjct: 728 ENEWYSSIVGKDVADDQNAGGKLAVLFEILRLAHECDDKILVFSQSLLSLDLIEEMLALS 787

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEG---KIPLLFA 114
              ++ +     I     +      L      G +L K     I E+N+    +  L   
Sbjct: 788 TVKVLSQLEDGKISTEIDYRKWYKNLDYFRMDGSSLGKSRQRWINEFNDETDRRARLFLI 847

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +   G+NL    N +V F   W+        +   + R  + G  +  ++Y LIAQ 
Sbjct: 848 STKAGSLGVNLVA-ANRVVIFDASWNPSH-----DIQSIFRVYRFGQAKCCYIYRLIAQG 901

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T++E +  R  TK ++   +++ 
Sbjct: 902 TMEEKIYDRQVTKQSLSFRVVDE 924


>gi|189208600|ref|XP_001940633.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187976726|gb|EDU43352.1| DNA repair and recombination protein RAD26 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1311

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 31/215 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE----------EKHWKE 50
           M  + K    L   +          A       QLA     + +          +   + 
Sbjct: 585 MVTFQKLANHLALIVPMSTENQEKQAKDLQTL-QLAC-PSTFKDLFQIRDNILVQSQREF 642

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDK-DP 98
               K+    +    +N   +++  H           F+ D  +   ++  G    +   
Sbjct: 643 CGKWKVLRRLLDFWHSNGDKVLIFSHSVRLLRLLRGLFDVDGTKYNFSYLDGSMKYEDRS 702

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N +    +      + G GLN+    N +V     W+        +     R  
Sbjct: 703 QAVADFNADPNQFVFLISTKAGGVGLNITS-ANKVVVMDPHWNPA-----YDLQAQDRAY 756

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 757 RIGQTRNVEVFRLVSSGTIEEVVYARQIYKQQQAN 791


>gi|328778981|ref|XP_001121991.2| PREDICTED: lymphoid-specific helicase-like [Apis mellifera]
          Length = 379

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 28/186 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVH---------DEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
            ++ N             +            K+  L+ ++   K     +++       L
Sbjct: 143 KKIVNHPYLIHCPLGPDGLPKIDEELVTSSGKLLVLDAMLARLKKQGHKVLLFSTMTMIL 202

Query: 82  ARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
             ++                  L      IQ +N   +I L      + G GLNL  G +
Sbjct: 203 DVIEDYLSLRDFKYVRLDGSIKLSVRKENIQNFNTNPEIFLFLISTRAGGVGLNL-IGAD 261

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +     ++   + R  + G  R V +Y L  + TIDE+++ R   K  +
Sbjct: 262 TVIIYDSDWNPQ-----VDIQAMARCHRIGQTRPVMIYKLCTKGTIDEVIINRAEAKRLL 316

Query: 191 QDLLLN 196
           + ++++
Sbjct: 317 EKVVIS 322


>gi|255716748|ref|XP_002554655.1| KLTH0F10406p [Lachancea thermotolerans]
 gi|238936038|emb|CAR24218.1| KLTH0F10406p [Lachancea thermotolerans]
          Length = 765

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  ++    +            T  +   TI+ +       +      +
Sbjct: 614 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENTHCEVFLVSLKA 673

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 674 GGVALNL-CEASQVFIMDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIES 727

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++    K+ +    +N
Sbjct: 728 RIIELQEKKANMIHATIN 745


>gi|123977009|ref|XP_001330686.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
 gi|121897321|gb|EAY02446.1| SNF2 family N-terminal domain containing protein [Trichomonas
            vaginalis G3]
          Length = 1326

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 19/187 (10%)

Query: 17   GENIEAFNSASKTVKCLQLANG--AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
               IE           L    G      +  +    +  E   A++ II+     P +V 
Sbjct: 1109 EGTIEESGKLVVLRDLLLYTLGFGPGKEEVLRQKVVIFCESESAIKEIIKYV--IPCLVD 1166

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILV 133
              F          F    + D+    I  +     P L  A  ++ GHG+NL    N++V
Sbjct: 1167 TTFV--------KFDSSLSQDERDKNIDAFMSENGPDLFIATKSAAGHGINLTA-ANVVV 1217

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            FF L W+       I+     R  + G K+ V +Y ++ + TIDE +    + K  I D 
Sbjct: 1218 FFELNWNPA-----IDLQAEDRVHRIGQKKQVRIYSIVMEGTIDERIENSQKRKKMIMDS 1272

Query: 194  LLNALKK 200
            +++  K+
Sbjct: 1273 VIHDQKE 1279


>gi|302658647|ref|XP_003021025.1| hypothetical protein TRV_04890 [Trichophyton verrucosum HKI 0517]
 gi|291184900|gb|EFE40407.1| hypothetical protein TRV_04890 [Trichophyton verrucosum HKI 0517]
          Length = 921

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKD 97
              KI+AL  I+    +A     +V   + S L  ++               +  +  +D
Sbjct: 747 SSSKIQALIKILTAKGQAAGTKTVVFSQWTSFLDLIEPHLVLYNINFARIDGKMNSAQRD 806

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +   + +  ++ A    C  GLNL    N +V    WW        IE   V R  
Sbjct: 807 AAMSKFSRDSECTVMLASLNVCSVGLNLVA-ANQVVLADSWWAPA-----IEDQAVDRVY 860

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R   ++ L+ +N+I++ VL   + K  +       
Sbjct: 861 RLGQTRPTTIWRLVMENSIEDRVLDIQKEKRELMSTAFQE 900



 Score = 34.3 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 3/30 (10%), Positives = 10/30 (33%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +G+     +     ++  Q+ N      + 
Sbjct: 612 KGKKTTYSHVLEVLLRLRQVCNHWKLCHDR 641


>gi|240279479|gb|EER42984.1| DNA excision repair protein [Ajellomyces capsulatus H143]
          Length = 979

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
            QL           + +     ++    +     N   ++V  H    L  LQ  F    
Sbjct: 543 RQLYATRDSILNYANHEFCGKWRVLKKLLRWWHGNGDKVLVFSHSVRLLKMLQMLFKHTS 602

Query: 91  --------GRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                     + +     +  +N   +  +      + G GLN+    N +V     W+ 
Sbjct: 603 YNVSYLDGAMSYEDRAKVVDNFNADIREFVFLISTRAGGVGLNITS-ANKVVVVDPNWNP 661

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                  +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 662 A-----YDLQAQDRAYRIGQARDVEVFRLVSAGTIEEIVYARQIYKQQQAN 707


>gi|198434690|ref|XP_002126745.1| PREDICTED: similar to DNA excision repair protein ERCC-6-like
           (ATP-dependent helicase ERCC6-like) (PLK1-interacting
           checkpoint helicase) (Tumor antigen BJ-HCC-15) [Ciona
           intestinalis]
          Length = 1159

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPC 99
             K++ L  ++ +        ++       L  +Q+                  L +   
Sbjct: 471 SGKLQFLIPLLLRLREEGHRTLIFSMSRKMLNIIQRILMNLKFKVMRMDGLVTKLSEREK 530

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +  +    +        G GL L    + +V +   W+     Q ++RI      +
Sbjct: 531 RVKLFQEDSSYSVFLLTTQVGGVGLTLTA-ADRVVIYDPSWNPATDSQAVDRI-----YR 584

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G K++V VY LI   +++E + +R   K+++   
Sbjct: 585 IGQKKSVAVYRLITCGSVEEKIYRRQIFKNSVIQQ 619


>gi|155121958|gb|ABT13826.1| hypothetical protein MT325_M272L [Paramecium bursaria chlorella
           virus MT325]
          Length = 459

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHDEKIK 57
           +K Y  +         G++          ++  Q         +      + E    K+K
Sbjct: 237 LKAYKAY---------GDSEGRMEILKTLLRLRQCTANITMVPKNDSKDEFYEGTSTKLK 287

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-E 106
            LE  I+ +     ++  HF+ ++  ++                 + D+    I+++N +
Sbjct: 288 MLEDDIKASPIQKTLIFAHFHKEMTAIKDMLLSNGHKSVSINGNVSGDERVKAIKQFNED 347

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                     A+ G GLNLQ   + +    + W+        E   + R  + G  + V 
Sbjct: 348 SATNFFIIQIAAGGVGLNLQT-ASRIYINGVDWN-----GTSETQAIARAHRIGQTKPVI 401

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V  LI  ++ID+ ++   + K      +L   +
Sbjct: 402 VKRLIINDSIDDAIIGLQQKKFGAAADILGDER 434


>gi|50509490|dbj|BAD31171.1| putative DNA repair protein rhp16 [Oryza sativa Japonica Group]
          Length = 569

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  ++E   +A  IV   F S L  ++ +  +              ++K     
Sbjct: 401 DALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEKGKAID 460

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    +      + G  LNL    + +     WW+       +E     R  + G 
Sbjct: 461 TFTNDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VESQAQDRIHRIGQ 514

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +     + ++T++E +LQ    K  + +  +  
Sbjct: 515 FKPIRSMRFVIKDTVEERILQLQEKKRLVFEGTVGD 550


>gi|225680964|gb|EEH19248.1| SNF2 family helicase/ATPase [Paracoccidioides brasiliensis Pb03]
          Length = 663

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
             K+  L  ++   K N    ++   F             +           +++     
Sbjct: 462 SGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTVQMPFFRLDGSTSVEDRQAI 521

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  ++E  +IP+      + G G+NL    N ++ F   ++ +      +     R  + 
Sbjct: 522 LDAFHEQVEIPVFLLSTKAGGAGVNL-ACANKVIIFDSSFNPQ-----EDVQAENRAHRV 575

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 576 GQTREVEVVRLVTRGTIEEQMYALGQTKLALDQRV 610


>gi|47222924|emb|CAF99080.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2099

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 17/196 (8%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +E   +   E +E         + L++A              +  + I+    +  +A  
Sbjct: 1548 KEFVTEADAEILEHSGKMMLLFEILRMAEEVEDKVLVFSQSLISLDLIEDFLELSCRAKD 1607

Query: 69   APIIVAY-----HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCG 120
               +  Y      F               +        +E+N+       L      +  
Sbjct: 1608 EDKVSPYKGEGKWFR---NIDYYRLDGSTSATTRKKWAEEFNDTSNVRGRLFLISTRAGS 1664

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL    N ++ F   W+     Q I R+      + G  + VFVY  +AQ T++E +
Sbjct: 1665 LGINLVA-ANRVIIFDASWNPSYDVQSIFRV-----YRFGQHKTVFVYRFLAQGTMEEKI 1718

Query: 181  LQRLRTKSTIQDLLLN 196
              R  TK ++   +++
Sbjct: 1719 YDRQVTKQSLSFRVVD 1734


>gi|222630854|gb|EEE62986.1| hypothetical protein OsJ_17794 [Oryza sativa Japonica Group]
          Length = 947

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC 99
           H  K++ALE ++         I++  +    L  L+K           F     ++    
Sbjct: 609 HCGKMRALERLLSLWTLQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQL 668

Query: 100 TIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N      +      +   G+NL    N +V F   W+  +     +     R  +
Sbjct: 669 LIDEFNRCPSKQVFLISTRAGNLGVNLVS-ANRVVIFDPSWNPAQ-----DLQAQDRSFR 722

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +R V V+ L+   +++EL+  R   K  + ++ ++ 
Sbjct: 723 FGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSG 761


>gi|54025735|ref|YP_119977.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54017243|dbj|BAD58613.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 575

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 21/206 (10%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y    +    D             +      Q+ N       E         K+    
Sbjct: 348 RVYDTLLQRAVDDGFGAGPQRQSRVLAALTALKQVCNHPGLVTGELDELAGRSGKLDLCT 407

Query: 61  VIIEKA--NAAPIIVAYHFN-----------SDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
            I+     NAAP ++   +                     F  G    +    ++++   
Sbjct: 408 DIVAANLDNAAPTLIFTQYRGTGELLVRHLREQFGLAAPFFHGGLNQTERARIVRDFQSP 467

Query: 108 K-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+L     + G GL L    + ++ F  WW+       +E     R  + G  R V 
Sbjct: 468 DGPPVLVLSLRAAGTGLTLTRAAD-VIHFDRWWNPA-----VEAQASDRAHRIGQTRTVT 521

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           V  L +  T++E +      KS + D
Sbjct: 522 VTTLTSGTTVEEHIAGMHDRKSALTD 547


>gi|222635334|gb|EEE65466.1| hypothetical protein OsJ_20855 [Oryza sativa Japonica Group]
          Length = 4273

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 54   EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
             K++ L+ ++ K       +++       L  ++                 +  +    I
Sbjct: 1261 GKLEMLDRLLPKLKATGHRVLLFSTMTRLLDVMEDYLVWKKYKYLRLDGHTSGQERGALI 1320

Query: 102  QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             ++N       +      + G G+NLQ   + ++ F   W+ +     ++     R  + 
Sbjct: 1321 DKFNNPNSQAFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQARAHRI 1374

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V V  L    T++E V      K  + +  + A
Sbjct: 1375 GQKKEVLVLRLETVQTVEEQVRASAEHKLGVANQSITA 1412


>gi|242072472|ref|XP_002446172.1| hypothetical protein SORBIDRAFT_06g003030 [Sorghum bicolor]
 gi|241937355|gb|EES10500.1| hypothetical protein SORBIDRAFT_06g003030 [Sorghum bicolor]
          Length = 1174

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 51   VHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                K+  L ++++         IV   F S    L+  F Q                  
Sbjct: 1005 KDSCKVSKLIMMLQSLQKKKEKSIVFSQFTSFFDLLEIPFNQKGIKFLRFDGKLSQKHKE 1064

Query: 99   CTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++E++E +   +L     + G GLNL    + +     WW+    +Q I RI      
Sbjct: 1065 KILKEFSETQDKLVLMMSLKTGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI-----H 1118

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            + G KR V V   I ++T++E + Q    K  +    L   +     +
Sbjct: 1119 RIGQKREVRVKRFIVKDTVEERLQQVQMRKQRMVSGALTDEEIRGARI 1166



 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 44/209 (21%), Gaps = 46/209 (22%)

Query: 4    YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y    R                    N     ++  Q  +                 K  
Sbjct: 840  YEALFRRSKVQFDKFVAQGSVLNNYANVLELLLRLRQCCDHPFLVISRADP-----GKYA 894

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             L+ +           A  F   +           +       ++E  +G          
Sbjct: 895  DLDQV-----------AQQFLEGVQSFSGRQNVVPSRAYVEEVVEEIRQGATTECPICLE 943

Query: 118  SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER--------IGVTRQRQAGF----- 161
            S      L    + +      S W   +     + R        I +  Q +        
Sbjct: 944  SASDDPVLTPCAHRMCRECLLSSWRTPDGGPCPLCRSHISKSDLIILPAQCRFQVDAKNN 1003

Query: 162  -KRAVFVYYLIAQNTIDELVLQRLRTKST 189
             K +  V  LI        +LQ L+ K  
Sbjct: 1004 WKDSCKVSKLIM-------MLQSLQKKKE 1025


>gi|157155470|ref|YP_001461436.1| SNF2 family helicase [Escherichia coli E24377A]
 gi|157077500|gb|ABV17208.1| helicase, SNF2 family [Escherichia coli E24377A]
          Length = 1080

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 31/204 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            +G             +   +       + E  +++ +  K+  L  I+ +          
Sbjct: 866  EGMQQAGTGMLGLLHRLKLICAHPAVVNPEPRFRD-NSPKLNWLLKILAELKHTTKDKVI 924

Query: 76   HFNS--DLARLQKAFPQGRTLDK-----------------DPCTIQEWNE-GKIPLLFAH 115
             F    DL R  +     +   +                     I ++       ++   
Sbjct: 925  IFTELRDLQRELQHAIHQKFGFRPVIINGDTSTKSQSQNSRQRLIDDFQAQPGFGVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +     E     R  + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAK-----EDQATDRAYRIGQTKDVYVYYPTVKDT 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLL 195
               T +E +   L+ +  +   +L
Sbjct: 1039 EITTFEETLDDLLQRRRALARDML 1062


>gi|310795289|gb|EFQ30750.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 903

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDP 98
              K +AL  I++   K   + +I+   + S L  +Q                 T  K  
Sbjct: 730 KSSKTEALLKILQATTKDPKSKVIIFSQWTSFLTIIQNQLVEAGYKFARIDGSMTASKRD 789

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I   + +    ++ A  A C  GLNL    + ++    WW        IE   V R  
Sbjct: 790 AAIHALDHDPDTRVMLASLAVCSVGLNLVA-ADTVILADSWWAPA-----IEDQAVDRVH 843

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G KR   V+ L+ + T++E VL     K T+         K
Sbjct: 844 RLGQKRPTTVWRLVMEGTVEERVLDIQHEKRTLVGKAFQEKNK 886



 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 7/49 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-------NSASKTVKCLQLANGAVYYD 43
           ++Y     E    L+     A        N   + ++  Q+ N      
Sbjct: 576 RKYDALLSEAQVALKDYQANASGVKGQFQNVLERLLRLRQVCNHWTLCR 624


>gi|183234185|ref|XP_650328.2| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801218|gb|EAL44942.2| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 764

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 81/237 (34%), Gaps = 50/237 (21%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------- 52
           +K Y    +E    L+ + ++  ++        +L N      +    +++         
Sbjct: 449 IKLYKIMLKE----LEKKKLDQCSALKYIQLFTKLCNHPSLISKYLTEEKISLNENDEKC 504

Query: 53  ----------DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
                       K       I++    +   +++  ++   L   +  F Q         
Sbjct: 505 IKGISLNEESSNKFNITIQFIKEILIKSKEKVVLVSNYTKTLDLFEIYFKQEEEYKQKKI 564

Query: 93  ----------TLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     +  +    +++ N+      +L     + G GLNL  G + L+ F   W+
Sbjct: 565 FNYLRLDGKTSQKQRDIIVEKINDKSSNYNILLLSSKAGGVGLNL-IGCSRLILFDPDWN 623

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +     ++  + R  + G ++   +Y ++   TI+E + QR   K+ I + ++  
Sbjct: 624 PAK-----DKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQRQLQKNQISESIIEE 675


>gi|260942529|ref|XP_002615563.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
 gi|238850853|gb|EEQ40317.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
          Length = 819

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 17/155 (10%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP 110
           +    +    IV   F S L  ++    +                +D           + 
Sbjct: 660 LRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQGSMSPQQRDRTIKHFMENTNVE 719

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G  LNL    + +     WW+     Q ++R+      + G KR + +   
Sbjct: 720 IFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITRF 773

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             +++I+  +++    K+ +    +N        +
Sbjct: 774 CIEDSIESKIIELQEKKANMIHATINHDDAAVNRL 808



 Score = 34.3 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 5/94 (5%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +R+    +    +     N  +   +  QLA+      +      V  E    + 
Sbjct: 503 LYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAVSSEVDGVIM 562

Query: 61  VIIEKANAAPII---VAYHFNSDLARLQKAFPQG 91
             +    A   I     + F     R       G
Sbjct: 563 CQLCDDEAEEPIESKCHHRFCRMCIREYCESFSG 596


>gi|170102282|ref|XP_001882357.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
 gi|164642729|gb|EDR06984.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
          Length = 1341

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 21/172 (12%)

Query: 47   HWKEVHDEKIKALEV---------------IIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
              K +   K+K +                 II +      +V+ +         K     
Sbjct: 1153 MPKFLPSTKMKFMMEVLIKGIEKRPEEKTLIISQWTGCLSLVSAYLTEKGIIHVKYQGDM 1212

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                +D       ++ K  ++       G GLNL    N ++   L W      + IE  
Sbjct: 1213 NRNKRDQAVRVFMSKDKARVMLMSLKCGGVGLNLTR-ANNVISLDLGWS-----RAIEDQ 1266

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               R  + G  R V V  L+  +T+++ +L     K ++ D  L       I
Sbjct: 1267 AFDRVHRLGQTRPVEVQRLVIADTVEDRLLNIQERKQSLADGSLGEGTGRKI 1318


>gi|300121090|emb|CBK21472.2| unnamed protein product [Blastocystis hominis]
          Length = 1183

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALE----------------------VIIEKAN 67
           ++  +  N     +  +  +    +K + +E                      +   KA 
Sbjct: 440 MQFRKCCNHPYMLEGVEEMESEELKKAEEMEFKDLTKHPLVQSSGKMVLLHKLLGKLKAE 499

Query: 68  AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIP--LLFAH 115
              +++   F + L  L++                  +     I+ +N+           
Sbjct: 500 GHRVLIFSQFTTMLDILERYLRLAGLSYTRIDGSVRGNAREEAIRTFNDENSNMFCFLLS 559

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+ L    + ++ F   W+ +      +     R  + G  +AV VY LI + T
Sbjct: 560 TRAGGVGITLTT-ADTVIIFDSDWNPQN-----DVQAQARCHRIGQTKAVRVYRLITRGT 613

Query: 176 IDELVLQRLRTKSTIQDLLL 195
            +  + QR   K  ++  ++
Sbjct: 614 YEAAMFQRASLKLGLEQAVM 633


>gi|294656125|ref|XP_002770225.1| DEHA2C15774p [Debaryomyces hansenii CBS767]
 gi|199430877|emb|CAR65588.1| DEHA2C15774p [Debaryomyces hansenii]
          Length = 1100

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 51   VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
            ++  KI  L  I++K       +++   F   L  L+K                    + 
Sbjct: 925  LNGGKISKLIEILDKIINKKEKVLIFSLFTQMLDILEKVLTISNMKFLRLDGQTSVDTRQ 984

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                + +++  IP+      + G G+NL    N ++ F   ++  +     ++    R  
Sbjct: 985  DLIDKFYDDETIPVFLLSTKAGGFGINLVA-ANHVIIFDQSFNPHD-----DKQAEDRAH 1038

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G    V V  LIA+NTI+E +LQ    K  +   +
Sbjct: 1039 RVGQTSEVVVTKLIAKNTIEENMLQLAENKLQLDQSI 1075


>gi|324501030|gb|ADY40465.1| Transcription termination factor 2 [Ascaris suum]
          Length = 1277

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR 92
            +A+G     E          K+ AL   +++A       ++   + S L  ++    Q  
Sbjct: 1053 IADGHQGNVEYLFEAPFQSAKLVALFERLDQALALGDKCVIVSQWTSLLDIVEYHLKQRD 1112

Query: 93   TLD----------KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                              ++ +N   G   ++       G       GGN L    L W+
Sbjct: 1113 VQYTSITGKVLTKDRQPRVESFNRVGGGARVMLLSLT-AGGVGLNLVGGNHLFLIDLHWN 1171

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                QQ  +RI      + G  + VF++ +I   TI+E VL   ++K  +   +L     
Sbjct: 1172 PALEQQACDRI-----YRMGQTKEVFIHKIICLGTIEERVLTLQQSKMALAKGVLEGAAS 1226

Query: 201  ETI 203
            + +
Sbjct: 1227 KKL 1229


>gi|218199702|gb|EEC82129.1| hypothetical protein OsI_26164 [Oryza sativa Indica Group]
          Length = 816

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++K        N+    +      + G  LNL    + +     WW+       +E 
Sbjct: 697 MNIVEKGKAIDTFTNDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VES 750

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G  + +     + ++T++E +LQ    K  + +  +  
Sbjct: 751 QAQDRIHRIGQFKPIRSMRFVIKDTVEERILQLQEKKRLVFEGTVGD 797


>gi|115334540|dbj|BAF33260.1| chromodomain helicase DNA binding protein 1 [Struthio camelus]
          Length = 301

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 31  RNQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 84

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R  + G K+ V +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 85  RAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 128


>gi|157126405|ref|XP_001654622.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108873308|gb|EAT37533.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 1374

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD------EKIKALEVI 62
            +++      E++   N      + L++        E+     +          ++    +
Sbjct: 835  KQIISKDDLESLYPSNKMILLFEILRMC------QEKGEKCLIFSGFVMVLNMVEYFMKM 888

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNEGK---IPLLFA 114
            I++ +  P    Y  +      +          G +       I ++N+ K     +   
Sbjct: 889  IDEQSKNPKAHLYGLSRFRGPWRPGMDYYRLDGGTSKSTRHEMINKFNDPKNRVTRVFLI 948

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL  G N +V     W+    QQ I RI      + G ++  ++Y L+A +
Sbjct: 949  STKAGGQGINL-VGANRVVILDTSWNPAVDQQGIFRI-----YRLGQQKPCYIYRLLAIH 1002

Query: 175  TIDELVLQRLRTKSTIQDLLLNALKKET 202
            T++E V  R  TK  +   +  A KK+ 
Sbjct: 1003 TMEEKVYSRAVTKQAMSHRV--ADKKQV 1028


>gi|224132088|ref|XP_002328182.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222837697|gb|EEE76062.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 896

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT------ 93
              D EK+W E         E+ I + + +  I+   + + L  LQ    +         
Sbjct: 718 FQIDIEKNWVESSKIVALLQELEILRLSGSKSILFSQWTAFLDLLQIPLSRSNISFVRLD 777

Query: 94  ----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +    I+++  +  I +L     + G G+NL    +       WW+    +Q +
Sbjct: 778 GTLNQQQRERVIKQFSEDDSILVLLMSLKAGGVGINLTA-ASNAFVMDPWWNPAVEEQAV 836

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            RI      + G  + V +   I + T++E +      K  +    L   +  T  +
Sbjct: 837 MRI-----HRIGQTKRVMIRRFIVKGTVEERMEAVQARKQLMISGALTDQEVRTARI 888



 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 48/198 (24%), Gaps = 36/198 (18%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD---- 53
           Y    ++                   +     ++  Q  +           +E  D    
Sbjct: 562 YEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKL 621

Query: 54  -EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            ++    + I+ +  A  +    +    +  L K                    G+ P+ 
Sbjct: 622 AKRFLKGDQIVLEGEAINVPSRAYIKEVVEELSKGEQ-----------------GECPIC 664

Query: 113 FAHPASCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       L    + L      + W +       + R  +TRQ             
Sbjct: 665 L----EACEDAVLTPCAHRLCRECLLASWRNASSGLCPVCRKAITRQELITAPTDSRFQI 720

Query: 170 LIAQNTID-ELVLQRLRT 186
            I +N ++   ++  L+ 
Sbjct: 721 DIEKNWVESSKIVALLQE 738


>gi|167517701|ref|XP_001743191.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778290|gb|EDQ91905.1| predicted protein [Monosiga brevicollis MX1]
          Length = 102

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           NS +  +        ++ +    I ++N    I          G G+NL  G + +V F 
Sbjct: 1   NSFMCSMICRMDGMTSIKRRQPLIAQFNSNPSIFTFVLTTRVGGLGVNLT-GADRVVIFD 59

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
             W+        +     R  + G  RAV VY L+   TI+E +  R 
Sbjct: 60  PDWNPST-----DVQARERAWRIGQSRAVAVYRLLCAGTIEEKIYHRQ 102


>gi|302795003|ref|XP_002979265.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
 gi|300153033|gb|EFJ19673.1| hypothetical protein SELMODRAFT_110395 [Selaginella moellendorffii]
          Length = 684

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 64/190 (33%), Gaps = 31/190 (16%)

Query: 30  VKCLQLANGAVYYDEEKHWKEV---------HDEKIKALEVIIE---KANAAPIIVAYHF 77
           ++  +  N      +E +                K+K L   +    K+    +++    
Sbjct: 416 MQLRKNCNHPDLLRQEFNQDYDWPPVEQLTAECGKLKFLLDRLLPPLKSRGHRVLIFSQM 475

Query: 78  NSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
              L  L+    +                +    I    EG   +      + G G+NL 
Sbjct: 476 TKMLDILEFCLGERGMPPFRLDGNVKQEDRQEQVITFSREGF--VFLLSTRAGGLGINLT 533

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +  + +   W+ +     ++   + R  + G  R V VY L   ++++  +L+   +
Sbjct: 534 S-ADTAIIYDSDWNPQ-----MDLQAMDRCHRIGQTRPVHVYRLATAHSVECRMLKVANS 587

Query: 187 KSTIQDLLLN 196
           K  ++ L++N
Sbjct: 588 KLQLETLVIN 597


>gi|260174930|ref|ZP_05761342.1| helicase domain-containing protein [Bacteroides sp. D2]
 gi|315923171|ref|ZP_07919411.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697046|gb|EFS33881.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 557

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 21/207 (10%)

Query: 2   KQYHKFQRELYCDL------QGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L   L        E IE         +     Q++            + V 
Sbjct: 340 KEYVDAERDLIMYLQKYKDADDEKIEKALRGEVMVRINILRQIS---ARGKVRDVIEFVK 396

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D +    ++I+  +      V                +     K        N  K  ++
Sbjct: 397 DFRENGKKIILFCSLHE---VVDQLKRYFPTAVSVTGRDSQDVKQRAVDAFQNNPKTDII 453

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    N + F    W   +  Q  +R       + G K +V  YY + 
Sbjct: 454 ICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSVTCYYFLG 507

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
           + TIDE V + ++ K  I + +  + +
Sbjct: 508 RRTIDEKVYRIIQEKKNIANAVTGSTE 534


>gi|224133490|ref|XP_002328055.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222837464|gb|EEE75843.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 843

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DP 98
            H  K++ALE ++    +    I++  +    L    +    +G +  +           
Sbjct: 512 KHCGKMQALEKLMFSWASRGDKILLFSYSVRMLDILEKFLIRKGHSFSRLDGSTPTNLRQ 571

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N      +      + G GLNL    N +V F   W+  +     +     R  
Sbjct: 572 SLVDDFNSSPSKQVFLISTRAGGLGLNLVS-ANRVVIFDPNWNPAQ-----DLQAQDRSF 625

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR V V+ L+A  + +ELV  R   K  + ++ ++ 
Sbjct: 626 RFGQKRHVVVFRLLAAGSFEELVYSRQVYKQQLSNIAVSG 665


>gi|167517741|ref|XP_001743211.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778310|gb|EDQ91925.1| predicted protein [Monosiga brevicollis MX1]
          Length = 689

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 56/207 (27%), Gaps = 50/207 (24%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDE--------------------------------KIKAL 59
             QL+N            EV                                   K+  L
Sbjct: 447 LRQLSNHPALLLPRADDDEVVRAELSEKVFEPEDPWMQSMLRNQLTSAGDTSVCGKLAIL 506

Query: 60  EVII--EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
             ++   +     +++  +    L           R         +       + ++   
Sbjct: 507 MQLLARWEKEQLSVVIFSYTTRLLNIIQDALSLQGRTPLRIDGQVSARDRHAVVAKFQAR 566

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L     + G G+NLQ   + +V     W+        +     R  + G +  V V
Sbjct: 567 DERILLVSTHAGGEGINLQA-ASKVVIVDPCWNPAR-----DLQAQDRAYRLGTEHDVEV 620

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L+   T++ELV  R   K  +  ++
Sbjct: 621 LRLVTAGTLEELVYARQVYKLQLARMV 647


>gi|134056267|emb|CAK96395.1| unnamed protein product [Aspergillus niger]
          Length = 1151

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN-------------- 78
             Q+ +G +          V  + ++  +    +      I +  F+              
Sbjct: 958  CQVCDGWMPASYSTITALV-TQLLETADESKNQGPGERPIKSVVFSAWTSHLDLIEIALR 1016

Query: 79   -SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              D+    +         +     +  N   I +L A   + G GLNL    + +     
Sbjct: 1017 DHDITGFTRLDGTMSLAARSKALEELHNNPDITVLLATIGAGGVGLNLTA-ASKVYIMEP 1075

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++     Q ++R+      + G  R V     + + +I+E + +  + K  + DL LN 
Sbjct: 1076 QYNPAAVAQAVDRV-----HRIGQTREVTTVQFLMKGSIEEKIFELAKKKQQLADLSLNR 1130

Query: 198  LKKETIHV 205
             K +   V
Sbjct: 1131 GKLDKKEV 1138


>gi|290982366|ref|XP_002673901.1| predicted protein [Naegleria gruberi]
 gi|284087488|gb|EFC41157.1| predicted protein [Naegleria gruberi]
          Length = 873

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 38  GAVYYDEEKHWKEVHD---EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ-- 90
                      KE H     K+  L+ ++ +       +++  +F S L  ++K      
Sbjct: 584 HFPSDYNPNDKKEYHSQYSGKLLVLDNLLREIREVGDRVVIVSNFKSILNEIEKLCKIRD 643

Query: 91  --------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +K    +  +N  K    +      + G GLNL  G N L+     W+
Sbjct: 644 YPLSRLDGSTQSEKRMVIVNSFNSPKSNDFIFLLSSKAGGCGLNL-IGANRLIMIDPDWN 702

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   +   + R  + G K++VF+Y +I   TI+E + QR   K+ +    L+ 
Sbjct: 703 PSN-----DEQAMARVWRDGQKKSVFIYRMIGCGTIEEKIFQRQIVKTGLSKSTLDE 754


>gi|207347991|gb|EDZ73985.1| YAL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 516

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 32  CLQLANGAVYY---DEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQ 85
             +L           +  + + +   KI AL+ +++         +++   F   L  L+
Sbjct: 309 LHKLCCNFPNTLSKYQLHNDEWMQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 368

Query: 86  K----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             ++     I ++  +  IP+      + G G+NL    N ++ 
Sbjct: 369 MVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINL-VCANNVII 427

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   ++  +     +R    R  + G  + V +  LI +++I+E + Q  + K  +   +
Sbjct: 428 FDQSFNPHD-----DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYI 482

Query: 195 LNALKKETI 203
               K + +
Sbjct: 483 SEDKKSQDV 491


>gi|195395955|ref|XP_002056599.1| GJ10137 [Drosophila virilis]
 gi|194143308|gb|EDW59711.1| GJ10137 [Drosophila virilis]
          Length = 1061

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 21/159 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K+  +  I++     +    IV   + S L  L            +      +    
Sbjct: 890  PSSKMLKVLEILKTNVLKSKDKAIVVSQWTSVLDILGDLLEKERLQTLSLNGAIPVKNRQ 949

Query: 99   CTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+N+      +L     + G GLNL  G N L+ F L W+ +      E     R 
Sbjct: 950  DIVNEFNDERNPKRILLLSLTAGGVGLNL-IGANHLILFDLHWNPQL-----EAQAQDRI 1003

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G K+ V +Y ++  +T+++ +      K  + D +L
Sbjct: 1004 YRVGQKKDVIIYKIVCLDTVEQRIKALQDRKLELADGVL 1042



 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 4/72 (5%), Positives = 18/72 (25%), Gaps = 6/72 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------VHDEKIK 57
           Y   ++        + +++       ++  Q+       D     +          +   
Sbjct: 773 YKMHEKFSRMAGHSKEVKSHEILVLLLRLRQICCHPGLIDSMLEEEGAANLGHDDSDSYT 832

Query: 58  ALEVIIEKANAA 69
               ++ + N  
Sbjct: 833 PEIDLLAQLNKM 844


>gi|50304963|ref|XP_452439.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641572|emb|CAH01290.1| KLLA0C05368p [Kluyveromyces lactis]
          Length = 1605

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            +Y K   E    L+      + S  ++ K                 K+V D       VI
Sbjct: 1401 EYDKMVAEQKARLKNGYTIDYKSLKESKK---------VEMCLDIIKKVTDSNTDEKLVI 1451

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGH 121
              +      I+ +    +L      +    +  +    I+  + +    ++     +   
Sbjct: 1452 FSQFTMFFEILGHFIKKNLGLNFLRYDGSMSSSQRSACIESFYQDNNYRVMLISMKAGNS 1511

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL L    N ++    +W+       +E   + R  +   +R V+V+ L+ + ++++ ++
Sbjct: 1512 GLTLT-CANHVILADPFWNP-----FVEEQAMDRCHRISQEREVYVHRLLIKMSVEDRIV 1565

Query: 182  QRLRTKSTIQDLLLN 196
            +    K T+ +L ++
Sbjct: 1566 ELQNKKKTLVNLAMD 1580


>gi|189190492|ref|XP_001931585.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973191|gb|EDU40690.1| helicase SWR1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1030

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKI 109
             +  K      IV   F S L  ++                 T  +   +I  +     +
Sbjct: 869  KLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAQRQKSIDHFMTNPDV 928

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 929  EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 982

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L  +++++  ++     K+ +    +N  K
Sbjct: 983  LCVEDSVESRMVALQEKKAAMIAGTINNDK 1012


>gi|145513841|ref|XP_001442831.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410192|emb|CAK75434.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1024

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEV------HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N    +        V        
Sbjct: 615 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRVTDEIWRSS 674

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K + L+ II K       +++       +  ++  F                +     I
Sbjct: 675 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAFFEYRGWRYLRLDGSTKSEDRESRI 734

Query: 102 QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           Q +N       +      + G GLNLQ   + +V F   W+      M++     R  + 
Sbjct: 735 QLFNQENSIYNIFLLSTRAGGLGLNLQS-ADTVVLFDSDWNP-----MMDLQAQDRAYRI 788

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 789 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAVIIQA 826


>gi|284034556|ref|YP_003384487.1| SNF2-like protein [Kribbella flavida DSM 17836]
 gi|283813849|gb|ADB35688.1| SNF2-related protein [Kribbella flavida DSM 17836]
          Length = 742

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 27/175 (15%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
            ++  Q A           ++     K++ +  I+E+   +   ++V  +F + L R+++
Sbjct: 530 LMRMRQAA-----------FEVAGSAKLERIAEIVEEAREDGRKVVVFSYFLTVLDRIEQ 578

Query: 87  AFPQGRTLDK-------DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           A        +           + E+       +L +   + G GLN+Q   ++++     
Sbjct: 579 AVGPTTGSIRGAVGPTERQRLVDEFTAAPGHAVLLSQIEAGGVGLNMQA-ASVVILAEPH 637

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           W     Q       V R  + G  R V V+ L+A++T+D+ + +    K  + D 
Sbjct: 638 WKPSTEQ-----QAVARAHRMGQIRTVQVHRLLAKDTVDDRIREVQEHKRLLFDE 687


>gi|134055452|emb|CAK43967.1| unnamed protein product [Aspergillus niger]
          Length = 1670

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 71/209 (33%), Gaps = 31/209 (14%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDE-----------EKHWKEVHDEKIKALEVIIEKA 66
            +  E  N  +  ++  +       Y                       K + LE+++ K 
Sbjct: 913  KQTEKHNLNNILMQLRKCLCHPFVYSRAIEEKTSNAAVSHRHLVDAAAKFQLLELMLPKL 972

Query: 67   N--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL-- 112
                  +++   F  +L  ++                 +  +   TI  +N  + P    
Sbjct: 973  KNRGHRVLIFSQFLENLDIIEDFLEGVGLTYLRLDGRMSSLEKQKTIDAYNAEESPYFAF 1032

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S G G+NL    + ++     ++  +         ++R  + G K  V V+ L+ 
Sbjct: 1033 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMT 1086

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + + +E ++Q  + K  +  +L++ +  E
Sbjct: 1087 RASAEEKIMQIGKKKMVLDHVLIDRMVSE 1115


>gi|213401963|ref|XP_002171754.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
 gi|211999801|gb|EEB05461.1| ATP-dependent helicase RIS1 [Schizosaccharomyces japonicus yFS275]
          Length = 954

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 21/164 (12%)

Query: 49  KEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKA----------FPQGRTL 94
           + V   KI+    II   +       +++   F   L                +  G   
Sbjct: 769 QWVTSTKIEKALEIINDIHKKHPSDKVLLFSQFVPFLELFMVPLTQKGLKFIAYNGGMNA 828

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +    +  +  +    +L     +   GLNL    N ++    +W+       +E   +
Sbjct: 829 AQRNDALTAFETDPDAIVLLISLKAGNVGLNLT-CANHVIVLDPFWNP-----FVEDQAI 882

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + + V+ +I   TI+E V+     K  + +  +  
Sbjct: 883 DRAHRIGQTKDITVHRVIVGETIEERVVALQNKKRELINGAMGE 926



 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 2/61 (3%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 10  ELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           ++   ++   + +   +     ++  Q           +   + +D   +    + ++  
Sbjct: 582 QMRKFMKEGTVVSHYGSILVLLLRLRQACCHPWLVVAREATADDNDGFRREKLALFKQLP 641

Query: 68  A 68
            
Sbjct: 642 K 642


>gi|115472329|ref|NP_001059763.1| Os07g0511500 [Oryza sativa Japonica Group]
 gi|113611299|dbj|BAF21677.1| Os07g0511500 [Oryza sativa Japonica Group]
          Length = 635

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTI 101
           D   + +  ++E   +A  IV   F S L  ++ +  +              ++K     
Sbjct: 467 DALREEIRNMVEHDGSAKGIVFSQFTSFLDLIEFSLQKSGIKCVQLNGKMNIVEKGKAID 526

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N+    +      + G  LNL    + +     WW+       +E     R  + G 
Sbjct: 527 TFTNDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNPA-----VESQAQDRIHRIGQ 580

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +     + ++T++E +LQ    K  + +  +  
Sbjct: 581 FKPIRSMRFVIKDTVEERILQLQEKKRLVFEGTVGD 616


>gi|327266997|ref|XP_003218289.1| PREDICTED: helicase-like transcription factor-like [Anolis
           carolinensis]
          Length = 978

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
           +  + AL  + ++      ++   F   L+ ++    +            T  K    I+
Sbjct: 809 NALMHALIELRKQNPTVKSLIISQFTKFLSLIEIPLKESGFAFTRLDGSMTRKKRVEAIR 868

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 869 HFQSNETGSPTVMLLSLKAGGVGLNLTA-ASRVFLMDPAWNPAAEDQCFDRC-----HRL 922

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G K+ V +   I +N+++E +L+    K  +    L 
Sbjct: 923 GQKQDVIITKFIVKNSVEENMLKIQHKKRELAARALG 959


>gi|326512362|dbj|BAJ99536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 826

 Score = 79.4 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/197 (8%), Positives = 57/197 (28%), Gaps = 39/197 (19%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA----------------API 71
             ++  +       +             +      + +                     +
Sbjct: 553 LLIQLRKNCGHPDLF-----HSAFDSNSLYPPVDKLMEQCGKFQLLDRLLDALIKRNHKV 607

Query: 72  IVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASC 119
           ++   +   L                      L+     I  +N+    + +      + 
Sbjct: 608 LIFSQWTKILDILDYYLSEKGLKVCRIDGSVKLEDRRNQIAAFNDLNSGMNVFILSTRAG 667

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    +  + +   W+ +     ++   + R  + G  + V VY L   N+++  
Sbjct: 668 GLGINLTS-ADTCILYDSDWNPQ-----MDLQAMDRCHRIGQTQPVHVYRLATSNSVEGR 721

Query: 180 VLQRLRTKSTIQDLLLN 196
           ++++   K  ++ +++ 
Sbjct: 722 IIKKAFGKLKLEHVVIG 738


>gi|324500516|gb|ADY40241.1| Transcriptional regulator ATRX [Ascaris suum]
          Length = 1617

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 28/203 (13%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA- 69
            L  +    +    N        +Q+       +E      V  + I++L +I    +   
Sbjct: 1187 LVTEADENDFSLSNKLML---LVQIV---KKCEEIGDKILVFSQSIESLTLIKRMLHYMD 1240

Query: 70   -PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFA 114
               +     +  +            R            K      ++N        L+  
Sbjct: 1241 SHDLWFSDGHEAIKSANETWGWIEGRDYMVIDGQVQSGKRQEVQTKFNNPNNLRARLMLI 1300

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G N+    N ++ F   W+        +   + R  + G  + V++Y  IAQ 
Sbjct: 1301 STRAGSLGTNMVA-ANRVIIFDACWNPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQG 1354

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            T++E + +R  TK +    +++ 
Sbjct: 1355 TMEERIYKRQVTKESTALRVIDE 1377


>gi|167521105|ref|XP_001744891.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776505|gb|EDQ90124.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1094

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              I +      + G GLNL    + ++    WW        +E   + R  + G  + V 
Sbjct: 990  DLIEVFLMTLRTGGVGLNLTA-ASHVILVDPWWSPA-----VEAQAIDRVHRIGQDKPVT 1043

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETIHV 205
            +   I +++I+E +L   + K  +    L  NA +++   +
Sbjct: 1044 IKRYIMRDSIEERILALQKRKRALVHSALTRNATERQAERM 1084


>gi|328779113|ref|XP_392959.4| PREDICTED: Rad54 protein isoform 1 [Apis mellifera]
          Length = 741

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 48/218 (22%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEE---------------------KHWKEVHD 53
            +    E+ ++ S      +L N      E+                     K       
Sbjct: 442 FKKGKRESLSTLSAITLLKKLCNHPDLVYEKILEKSDGFENAAKLIPSNYSTKEILPELS 501

Query: 54  EKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCT 100
            K+  L+ ++          I++  ++   L   +K   +            T+ K    
Sbjct: 502 GKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDLFEKLCYKRCYNYVRLDGTMTIKKRSKV 561

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +N+      +      + G GLNL  G N LV F   W+        +   + R  +
Sbjct: 562 VERFNDSNSNDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DDQAMARVWR 615

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K+  F        TI+E + QR   K  +   +++
Sbjct: 616 DGQKKPCF------TGTIEEKIFQRQAHKKALSSTVVD 647


>gi|323454465|gb|EGB10335.1| hypothetical protein AURANDRAFT_52962 [Aureococcus anophagefferens]
          Length = 258

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L     + G G+NL  G N +V F + W+        +R  + R  + G KR VFVY
Sbjct: 82  CDVLLMSIKAGGEGINLT-GANRVVLFDVCWNP-----CFDRQAMCRAHRFGQKRPVFVY 135

Query: 169 YLIA-QNTIDELVLQRLRTKSTIQDLLLN 196
            L+A + T++  VL++ R K  +   ++ 
Sbjct: 136 RLVAPRGTMEAKVLRQQRRKELLVREVVE 164


>gi|322707220|gb|EFY98799.1| chromatin-remodeling complex ATPase chain isw-1 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1679

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 49   KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            + + D K    +V++   +   +        +  RL         + K    I+++N   
Sbjct: 1171 QILDDAKRSKDKVLVFSHSIPTLNYLSGLFQEQKRLFSRLDGKTPIAKRQEEIKKFNANH 1230

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLN+Q G N +V     W+    Q       + R  + G  + V VY
Sbjct: 1231 TEVYLISTRAGGVGLNIQ-GANKVVILDSKWNPVHEQ-----QAIGRSYRIGQSKPVSVY 1284

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +   T ++ +  R   K+ +   +++
Sbjct: 1285 YFVTAGTFEQDLHGRAIFKTQLATRVVD 1312


>gi|226497978|ref|NP_001141839.1| chromatin complex subunit A 101 [Zea mays]
 gi|224029693|gb|ACN33922.1| unknown [Zea mays]
          Length = 837

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 68/193 (35%), Gaps = 29/193 (15%)

Query: 27  SKTVKCLQLANGA-----------VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           S  ++  +                +Y    K  ++    ++    +    A    +++  
Sbjct: 561 SLFIQLRKNCAHPDLLEAAFGTTSLYPPVNKLLEQCGKFQLLDRLLTSLLARKHKVLIFS 620

Query: 76  HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGL 123
            +   L  L+                  L++    I E+N+    + +      + G G+
Sbjct: 621 QWTKVLDILEYYLDSKGLGVCRIDGSVNLEERRRQIAEFNDLNSSLNVFILSTRAGGLGI 680

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    +  + +   W+ +     +++  + R  + G  R V VY L    +++E ++++
Sbjct: 681 NLTS-ADTCILYDSDWNPQ-----MDQQAMDRCHRIGQTRPVHVYRLATSYSVEERIIKK 734

Query: 184 LRTKSTIQDLLLN 196
              K  ++ +++ 
Sbjct: 735 AFGKLKLEHVVIG 747


>gi|324500492|gb|ADY40232.1| Transcriptional regulator ATRX [Ascaris suum]
          Length = 1681

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 28/203 (13%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA- 69
            L  +    +    N        +Q+       +E      V  + I++L +I    +   
Sbjct: 1251 LVTEADENDFSLSNKLML---LVQIV---KKCEEIGDKILVFSQSIESLTLIKRMLHYMD 1304

Query: 70   -PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFA 114
               +     +  +            R            K      ++N        L+  
Sbjct: 1305 SHDLWFSDGHEAIKSANETWGWIEGRDYMVIDGQVQSGKRQEVQTKFNNPNNLRARLMLI 1364

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               +   G N+    N ++ F   W+        +   + R  + G  + V++Y  IAQ 
Sbjct: 1365 STRAGSLGTNMVA-ANRVIIFDACWNPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQG 1418

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            T++E + +R  TK +    +++ 
Sbjct: 1419 TMEERIYKRQVTKESTALRVIDE 1441


>gi|321470001|gb|EFX80979.1| hypothetical protein DAPPUDRAFT_21484 [Daphnia pulex]
          Length = 665

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 53/214 (24%)

Query: 38  GAVYYDEEKHW-----KEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ 90
             +       +      +    K++ L+ ++ +       +++       L  L+     
Sbjct: 13  HPIQSAMMTQFPDPRLIQYDCGKLQTLDNLLRQLKVGKHRVLIFTQMTRMLDVLESFLNH 72

Query: 91  GRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              +           +    ++ +N + +I        S G G+NL  G + ++F+   W
Sbjct: 73  HGHIYLRLDGTTRVDQRQVLMERFNADRRIFCFILSTRSGGVGVNLT-GADTVIFYDSDW 131

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVY----------------------YLIAQNTID 177
           +       ++     R  + G  R V +Y                       LI++ T++
Sbjct: 132 NPT-----MDAQAQDRCHRIGQTRDVHIYRRVHKFYIAYPLFIDSLLFHFSRLISERTVE 186

Query: 178 ELVLQRLRTKSTIQDLLLNA-------LKKETIH 204
           E +L++   K  + D+ +          KK+TIH
Sbjct: 187 ENILKKANQKRLLGDIAIEGGNFTAATFKKQTIH 220


>gi|313211798|emb|CBY15966.1| unnamed protein product [Oikopleura dioica]
          Length = 602

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 38/217 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH------------WKEVHD 53
           +  R+   +         +      K  QL +   +  +E+              K +  
Sbjct: 125 QRVRDALLE-------GAHCFGILAKLRQLVSHPYFVGDEETGKITEEQISRSIKKPLIS 177

Query: 54  EKIKALEVII--EKANAAPIIVAY-------HFNSDLARLQKA---FPQGRTLDKDPCTI 101
            K++AL  ++   +     ++V                R             +      I
Sbjct: 178 GKMQALLSLLGGWRKQKRKVLVFCQCLPSLKMIVGMCNRNYVPVLSIYGQTPVSTRQMLI 237

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N+      +       G GLN+  G    V F   W+  +     +     R  +  
Sbjct: 238 NEFNDSPDAFAMVMTSRVGGVGLNIH-GATRTVIFEPDWNPGQ-----DEQAAARIHRPQ 291

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               V +Y LI  ++I+E + QR   K ++   +L+ 
Sbjct: 292 QTDNVAIYRLITNDSIEEWIYQRQIYKHSVAQHVLSD 328


>gi|320591376|gb|EFX03815.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 978

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 17/144 (11%)

Query: 65  KANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
             N    IV   F S L               +   + R   ++        +    +L 
Sbjct: 751 SENEHKFIVFSQFTSMLDLLGPFLERAGLGHVQYDGRMRNDAREASLRSLREDAATRVLL 810

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                   GLNL      +V    +W+       +E   + R  +      V VY L   
Sbjct: 811 CSLKCGALGLNLTA-ATRVVILEPFWNP-----FVEEQAIDRVHRLTQTVDVTVYKLTIA 864

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
           +T+++ +L+    K  +    L  
Sbjct: 865 DTVEQRILELQAKKRLLAAHALEE 888



 Score = 42.8 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 2   KQYHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           + Y + +    + L   ++G  +   N+    ++  Q  N      ++
Sbjct: 516 RFYDQLEERADKSLEKMMKGSAMSYANALVLLLRLRQACNHPDLLKQQ 563


>gi|213408667|ref|XP_002175104.1| SHREC complex subunit Mit1 [Schizosaccharomyces japonicus yFS275]
 gi|212003151|gb|EEB08811.1| SHREC complex subunit Mit1 [Schizosaccharomyces japonicus yFS275]
          Length = 1366

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 66/198 (33%), Gaps = 31/198 (15%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANAAPIIVAY 75
             ++  +       Y ++   + +              K+  L +++ K       I+   
Sbjct: 822  LMQLRKTLAHPYIYSQDVEDRTLSAELSIRSMEEASAKMLLLRILVPKLIEKNHRILFFS 881

Query: 76   HFNSDLARLQKAFPQGRTLD----------KDPCTIQEW--NEGKIPLLFAHPASCGHGL 123
             F   L  L+  F                      I  +   +  +        + G G+
Sbjct: 882  QFIMQLDILEDWFDAKNIKYARFDGTTSESDRQNAIDAFCRKDSDLTCFLLSTRAGGVGI 941

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    + ++     ++  +         + R  + G K  V V+ L+ +N+++E ++Q 
Sbjct: 942  NL-AKADTVIILDPDFNPHQDM-----QAIARAHRFGQKNNVTVFQLMIRNSVEEKIVQV 995

Query: 184  LRTKSTIQDLLLNALKKE 201
             R K  +  L++  + K+
Sbjct: 996  ARRKLLLDHLIVETMDKD 1013


>gi|46125779|ref|XP_387443.1| hypothetical protein FG07267.1 [Gibberella zeae PH-1]
          Length = 1895

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++++N+G   +     A+ G GLN+  G N +V F +  +    Q       V R 
Sbjct: 1341 RQQQVKDFNQGSKEVFLISTAAGGVGLNIH-GANRVVIFDIRHNPSHEQ-----QAVGRA 1394

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G ++ VFVY  +   T ++ +  R   K  +   +++
Sbjct: 1395 YRIGQQKKVFVYRFMVAGTFEDNLNNRQVFKMQLASRVVD 1434


>gi|289621667|emb|CBI51578.1| unnamed protein product [Sordaria macrospora]
          Length = 1136

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L  +     +   I+   F + L  ++                 T  +   +I  + 
Sbjct: 970  VHELHKLRSDNASHKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASINHFM 1029

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                +        + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 1030 KNVDVECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQSRP 1083

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +  L  +++++  ++     K+ + +  +NA
Sbjct: 1084 CTITRLCIEDSVESRMVLLQEKKTNMINSTINA 1116


>gi|171687152|ref|XP_001908517.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943537|emb|CAP69190.1| unnamed protein product [Podospora anserina S mat+]
          Length = 974

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 24/172 (13%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDK 96
           H  K KA   +I+    +A    II+   +   L            R    +      D+
Sbjct: 732 HSTKTKATLDLIDGWQSEAPEDKIIIFVQWIPMLSILGRMLTQSGYRFVYFWGDLDQNDQ 791

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +           + ++ A      HGLNL    N  + +  WW++   Q         R 
Sbjct: 792 EQSLKTFRKVPAVKIMLASITCTAHGLNLT-VANRAIMYDHWWNVCRQQ-----QAFGRV 845

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL---KKETIHV 205
            + G  + V    ++   ++DE ++Q  + K T    +++ +   KK  I +
Sbjct: 846 HRIGQTKEVHTAKIVVGGSVDERIIQIQQDKETAISGVMDGMDEIKKRPISM 897


>gi|170097814|ref|XP_001880126.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
 gi|164644564|gb|EDR08813.1| SNF2 superfamily protein [Laccaria bicolor S238N-H82]
          Length = 828

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 30/165 (18%)

Query: 52  HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCT 100
              KI  L  +++        +V   F S L                F    +  +   T
Sbjct: 669 SSAKIDQLIHLLKLTPTNEKSLVFSQFTSFLDKIAETMDEEGIPYVRFDGQMSAKRRQET 728

Query: 101 IQEWNEG-------------KIPLLFAHPASCGHGLNLQ-YGGNILVFFSLWWDLEEHQQ 146
           +  ++E                 ++     +   GLNL     N +     WW     Q+
Sbjct: 729 LASFSEKGNRRPRSGLASKRNPRVMLISLKAGALGLNLTGKFANNVYLMDPWW-----QE 783

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            IE   V R  + G K+ V VY LIA++T++  VL+    K  + 
Sbjct: 784 GIESQAVDRVNRIGQKKNVHVYQLIAEDTVESKVLEIQERKKQLI 828


>gi|70568940|dbj|BAE06321.1| ATRX protein [Ciona intestinalis]
          Length = 1086

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      ++    I ++N   + +  L+     + G G+NL  G N  + F   W+
Sbjct: 720 DYYRMDGSTKNERRKTIIDQFNNESDTRCRLMLVSTRAGGIGINL-VGANRAIVFDASWN 778

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q I RI      + G  +  ++Y  IAQ T++E +  R   K ++   +++ 
Sbjct: 779 PTHDVQSIFRI-----YRFGQTKPCYIYRFIAQGTMEEKIYDRQVVKQSLASRVVDE 830


>gi|71409960|ref|XP_807298.1| DNA excision repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871269|gb|EAN85447.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1114

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ L+ ++   +     ++V       L  ++    Q            +       
Sbjct: 798 SGKLQTLQKLLTVWQRGGQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQEL 857

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +NE    +        G       G N +V F   W+      + +     R  + G
Sbjct: 858 MDRFNEDDSIVAALLTTRVGGVGVNLVGANRVVLFDPDWNP-----VTDEQARERAWRIG 912

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V VY LIA  T++E +L+R   K+ + + +L+
Sbjct: 913 QTRDVGVYRLIASGTVEEAILRRQLAKTYVTEKVLH 948


>gi|322830276|gb|EFZ33358.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1114

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ L+ ++   +     ++V       L  ++    Q            +       
Sbjct: 798 SGKLQTLQKLLTVWQRGGQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQEL 857

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +NE    +        G       G N +V F   W+      + +     R  + G
Sbjct: 858 MDRFNEDDSIVAALLTTRVGGVGVNLVGANRVVLFDPDWNP-----VTDEQARERAWRIG 912

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V VY LIA  T++E +L+R   K+ + + +L+
Sbjct: 913 QTRDVGVYRLIASGTVEEAILRRQLAKTYVTEKVLH 948


>gi|302682272|ref|XP_003030817.1| hypothetical protein SCHCODRAFT_68280 [Schizophyllum commune H4-8]
 gi|300104509|gb|EFI95914.1| hypothetical protein SCHCODRAFT_68280 [Schizophyllum commune H4-8]
          Length = 761

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIP 110
           + ++      IV   F + L  +     +                +D           +P
Sbjct: 602 LRQQDATTKSIVFSQFVNFLDLVAFRLQRAGFAVCRLEGTMSPQARDATIKHFMTNVDVP 661

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G  LNL    + +     WW+     Q ++RI      + G +R V    L
Sbjct: 662 VFLVSLKAGGVALNLTE-ASRVYLMDSWWNPAVEYQAMDRI-----HRLGQRRPVQAIKL 715

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           + +++I+  ++Q    K+ + D  L+
Sbjct: 716 VVEDSIESRIVQLQEKKAAMVDATLS 741


>gi|254566309|ref|XP_002490265.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|238030061|emb|CAY67984.1| Protein that recognizes and binds damaged DNA in an ATP-dependent
           manner (with Rad7p) [Pichia pastoris GS115]
 gi|328350658|emb|CCA37058.1| hypothetical protein PP7435_Chr1-0923 [Pichia pastoris CBS 7435]
          Length = 816

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
             IV   F S L  ++    +            +  +   TI+ + E   + +      +
Sbjct: 665 KSIVFSQFTSMLDLVEWRLKRAGFETVKLQGSMSPLQRESTIKHFMETPSVEVFLVSLKA 724

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 725 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQHRPVKITRFCIEDSIES 778

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++    K+ +    +N
Sbjct: 779 RIIELQDKKANMIHATIN 796


>gi|156095999|ref|XP_001614034.1| DNA repair protein rhp16 [Plasmodium vivax SaI-1]
 gi|148802908|gb|EDL44307.1| DNA repair protein rhp16, putative [Plasmodium vivax]
          Length = 1589

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPL 111
            + K      ++   + S L  ++    +            ++      +  +N +  + +
Sbjct: 1431 VMKTTDDKCLIFSQYCSMLDLIEYHLKKHNIICSKLLGYMSMVSRNNILYSFNEDKHLRV 1490

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     + G GLNLQ   N +     WW+            + R  + G  + V+    I
Sbjct: 1491 LLISLKAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYATRFI 1544

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             +NT++E ++Q    K  + D  +  
Sbjct: 1545 IENTVEEKIVQLQNKKQLVFDCTIGD 1570


>gi|325498704|gb|EGC96563.1| SNF2 family helicase [Escherichia fergusonii ECD227]
          Length = 1080

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 31/204 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            +G             +   +       + E  +++ +  K+  L  I+ +          
Sbjct: 866  EGMQQAGTGMLGLLHRLKLICAHPAVVNPEPRFRD-NSPKLNWLLKILAEIKHTTKDKVI 924

Query: 76   HFNS--DLARLQKAFPQGRTLDK-----------------DPCTIQEWNE-GKIPLLFAH 115
             F    DL R  +     +   +                     I ++       ++   
Sbjct: 925  IFTELRDLQRELQHAIHQKFGFRPVIINGDTSTKSHSQNSRQRLIDDFQAQPGFGVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +     E     R  + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAK-----EDQATDRAYRIGQTKDVYVYYPTVRDS 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLL 195
               T +E +   L+ +  +   +L
Sbjct: 1039 EITTFEETLDDLLQRRRALAKDML 1062


>gi|321468014|gb|EFX79001.1| hypothetical protein DAPPUDRAFT_319936 [Daphnia pulex]
          Length = 547

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 14/190 (7%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           +  E I   +   K +  + +       ++      V  + + AL++I E        V+
Sbjct: 274 VSDEEINKIDHGGKILLLMDILRH---CEKIGEKLLVFSQSLAALDLIEEFLANNASEVS 330

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNI 131
             +N  L +           +K       +N+    +         + G G+NL  G N 
Sbjct: 331 KTWN--LNKDYFRMDGSTKPEKRLEWGTAFNDPKNPRARFFLTSTKAGGIGINL-KGANR 387

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F + W+       ++   V R  + G  +  +VY  +AQ T++E++  R   K  + 
Sbjct: 388 VIIFDVSWNPS-----VDEQSVFRAYRLGQHKPCYVYRFVAQGTMEEIMYYRQVEKLALS 442

Query: 192 DLLLNALKKE 201
             +++  + E
Sbjct: 443 RRIVDGEQTE 452


>gi|83771802|dbj|BAE61932.1| unnamed protein product [Aspergillus oryzae]
          Length = 826

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
              KI+AL  I+    +A     +V   + S L  L+    +             +L +D
Sbjct: 651 PSSKIEALIKILTAQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARD 710

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +  ++    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 711 NSTYRFSHDPNCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 764

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G  R   V+ L+ +++I++ VL    TK  +         K+
Sbjct: 765 RLGQTRETTVWRLVMEDSIEDRVLAIQETKRKLMLAAFRETAKK 808



 Score = 34.7 bits (78), Expect = 8.4,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)

Query: 4   YHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           Y  FQ E    L         +    +     ++  Q+ N      + 
Sbjct: 498 YDMFQSEARGMLLDFKSKDKSSTTYSHLLEVILRLRQVCNHWALCKDR 545


>gi|307266866|ref|ZP_07548387.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918113|gb|EFN48366.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 224

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALEVIIEKAN--AAP 70
               ++ +      K ++L        +E             K++ L  ++ +       
Sbjct: 6   KNKGKSESPLGVLQKLMELCAHPRLVRDEGEVNTFQLLSESGKLQRLIELLNEIKRRGEK 65

Query: 71  IIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASC 119
            ++  H+    A L+               G         I  + E     ++     + 
Sbjct: 66  AVIFTHYIKMQAILRKVIMDVFGINCPVINGNIKGDRMSIIDRFKESSGFGVIILSTRAA 125

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA----QNT 175
           G G+ +    N ++ ++  W+       +E+    R  + G  R V +YY I       T
Sbjct: 126 GVGVTITE-ANNVIHYTRDWNPA-----VEKQATDRVYRIGQTREVNIYYPICISSRGKT 179

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           ++E + + L+ K  + + ++
Sbjct: 180 VEERLNEVLQKKLQLLNEVI 199


>gi|164607171|ref|NP_001101334.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Rattus
           norvegicus]
          Length = 1024

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 23/195 (11%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              +   +          K  Q     +   +      +   K + L  I+ +       
Sbjct: 815 LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRTLGCILSELKQKGDR 870

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 871 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 930

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 931 GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 984

Query: 180 VLQRLRTKSTIQDLL 194
           +L+  + K  ++  +
Sbjct: 985 MLKINQQKLKLEQDM 999


>gi|74150111|dbj|BAE24366.1| unnamed protein product [Mus musculus]
          Length = 924

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 65/210 (30%), Gaps = 33/210 (15%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N         + +  + +     
Sbjct: 721 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH 780

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 781 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 840

Query: 98  -PCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N              + G G+NL    + +V F   W+ +      +     
Sbjct: 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWNPQN-----DLQAQA 894

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           R  + G K+ V +Y L+ + +++E +L+R 
Sbjct: 895 RAHRIGQKKQVNIYRLVTKGSVEEDILERA 924


>gi|71018359|ref|XP_759410.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
 gi|46098957|gb|EAK84190.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
          Length = 1054

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 17/138 (12%)

Query: 70   PIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              +V   F + L  +                      ++           + +      +
Sbjct: 903  KSLVFSQFVNFLDLIAFRLQRAGFQICRLEGNMSPEARNRTIKHFMENPGVTVFLVSLKA 962

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G  LNL    + +     WW+     Q ++RI      + G  R + V  ++ +N+I+ 
Sbjct: 963  GGVALNLTE-ASRVYLMDPWWNPSVEVQAMDRI-----HRLGQHRPIIVKRMVIENSIES 1016

Query: 179  LVLQRLRTKSTIQDLLLN 196
             +++    KS + +  + 
Sbjct: 1017 RIIELQNKKSAMIEAAIG 1034


>gi|238494326|ref|XP_002378399.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220695049|gb|EED51392.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 942

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
              KI+AL  I+    +A     +V   + S L  L+    +             +L +D
Sbjct: 767 PSSKIEALIKILTAQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARD 826

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +  ++    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 827 NSTYRFSHDPNCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 880

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G  R   V+ L+ +++I++ VL    TK  +         K+
Sbjct: 881 RLGQTRETTVWRLVMEDSIEDRVLAIQETKRKLMLAAFRETAKK 924


>gi|317149015|ref|XP_001823065.2| SNF2 family helicase [Aspergillus oryzae RIB40]
          Length = 924

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 52  HDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
              KI+AL  I+    +A     +V   + S L  L+    +             +L +D
Sbjct: 749 PSSKIEALIKILTAQGQAPGTKTVVFSQWTSFLNLLEPHLNRYGVGFARVDGKMSSLARD 808

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             T +  ++    +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 809 NSTYRFSHDPNCKVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 862

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G  R   V+ L+ +++I++ VL    TK  +         K+
Sbjct: 863 RLGQTRETTVWRLVMEDSIEDRVLAIQETKRKLMLAAFRETAKK 906



 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)

Query: 4   YHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           Y  FQ E    L         +    +     ++  Q+ N      + 
Sbjct: 596 YDMFQSEARGMLLDFKSKDKSSTTYSHLLEVILRLRQVCNHWALCKDR 643


>gi|195473411|ref|XP_002088987.1| GE10215 [Drosophila yakuba]
 gi|194175088|gb|EDW88699.1| GE10215 [Drosophila yakuba]
          Length = 166

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++N +  I +      + G G+NL      ++   + ++        ++    R
Sbjct: 29  RQDLITDFNGDDNIFVFLLSTKAGGVGINLTAADTCVIH-DIDFNP-----YNDKQAEDR 82

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             + G +R V +Y LI+++TI+E +L     K  ++  + +  K E 
Sbjct: 83  CHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEV 129


>gi|326468579|gb|EGD92588.1| SNF2 family helicase [Trichophyton tonsurans CBS 112818]
          Length = 921

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
             KI+AL  I+    +A     +V   + S L  ++                     +D 
Sbjct: 748 SSKIQALIKILTAKGQAAGTKTVVFSQWTSFLDLIEPHLVIHNINFARIDGKMNSAKRDA 807

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   + +  ++ A    C  GLNL    N +V    WW        IE   V R  +
Sbjct: 808 AMGKFSRDSECTVMLASLNVCSVGLNLVA-ANQVVLADSWWAPA-----IEDQAVDRVYR 861

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R   ++ L+ +N+I++ VL   + K  +       
Sbjct: 862 LGQTRPTTIWRLVMENSIEDRVLDIQKEKRELMSTAFQE 900



 Score = 34.3 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 3/30 (10%), Positives = 10/30 (33%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +G+     +     ++  Q+ N      + 
Sbjct: 612 KGKKTTYSHVLEVLLRLRQVCNHWKLCHDR 641


>gi|225677983|gb|EEH16267.1| DNA repair and recombination protein RAD26 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1030

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
             N   ++V  H    L  LQ  F              T D     +  +N + +  +  
Sbjct: 630 HRNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFL 689

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ LI+ 
Sbjct: 690 ISTRAGGIGLNITS-ANKVVVVDPNWNPA-----FDLQAQDRAYRIGQSRDVEVFRLISA 743

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 744 GTIEEIVYARQIYKQQQAN 762


>gi|118378915|ref|XP_001022631.1| HSA family protein [Tetrahymena thermophila]
 gi|89304398|gb|EAS02386.1| HSA family protein [Tetrahymena thermophila SB210]
          Length = 1232

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 27/193 (13%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEK--ANAAPIIVAYHFN 78
            +  ++  +  N    +     ++          K + L+ ++ K       +++     
Sbjct: 706 MNLMMQLKKCCNHPYLFLNSDAYQIDDMIWRVSGKFELLDKMLAKLIRTGHRVLIFTQMT 765

Query: 79  SDLARLQKAF------------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
             +  +++ F                  D+    + ++N+   P  +      + G GLN
Sbjct: 766 HVMDLMEEYFKLREDYIKYLRLDGTTKADERGVKMAQFNQPNSPYNVFILSTRAGGLGLN 825

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   + ++ F   W+ +     +++    R  + G K  V VY L+    I+E +L + 
Sbjct: 826 LQT-ADTVIIFDSDWNPQ-----MDQQAQDRAHRIGSKSEVRVYRLVTNTWIEEEILSKA 879

Query: 185 RTKSTIQDLLLNA 197
             K  + ++++ A
Sbjct: 880 AYKMGLDEMIIQA 892


>gi|213406245|ref|XP_002173894.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212001941|gb|EEB07601.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 845

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 69/227 (30%), Gaps = 50/227 (22%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE--------------------- 54
           +  ++   +     ++  +++N  +        + +                        
Sbjct: 624 ESSSLATHSPGFLLMQLRKISNHFLLVRNHYTDELLKTMASEIMKEKTYADANEQYIFED 683

Query: 55  ---KIKALEVIIEKA---------NAAPIIVAYHFNSDLAR-----------LQKAFPQG 91
                     ++               P + A  F   L               +     
Sbjct: 684 MQVMTDIELHLLCSQYSSLNRFMLAGEPWMEATKFTQMLDILELVLKNLKVEFLRIDGST 743

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +   +     Q +      +      + G G+NL    N+++ + + ++  +     +  
Sbjct: 744 QVDSRQDLIDQFYENENYKVFLLSTKAGGFGINL-ACANVVILYDVSYNPFD-----DLQ 797

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              R  + G K+ V+V+ L+ ++T++E +L+   TK  + + +  A+
Sbjct: 798 AEDRAHRVGQKKDVYVHRLVVKDTVEENILKLANTKVALDETISGAV 844


>gi|242025432|ref|XP_002433128.1| helicase, putative [Pediculus humanus corporis]
 gi|212518669|gb|EEB20390.1| helicase, putative [Pediculus humanus corporis]
          Length = 942

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
           +  K+  L+ ++   +   + +++       L  L+                 + +    
Sbjct: 365 NCGKMVILDKLLPRLQDQDSRVLIFSQMTRMLDILEDYCFWKGYKYCRLDGNTSHEDRQR 424

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I E+N       +      + G G+NL    ++++ +   W+ +     ++   + R  
Sbjct: 425 QINEYNAPNSEKFIFMLSTRAGGLGINL-ATADVVILYDSDWNPQ-----MDLQAMDRAH 478

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  + V V+ LI +NT++E +++R   K  +  L++   +
Sbjct: 479 RIGQLKEVRVFRLITENTVEEKIVERAEVKLRLDKLVIQQGR 520


>gi|320167261|gb|EFW44160.1| hypothetical protein CAOG_02185 [Capsaspora owczarzaki ATCC 30864]
          Length = 1223

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 53   DEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQGRTLD----------KDP 98
              K+  L  I+E+          +V   + S L  L++     +             +  
Sbjct: 1031 SCKMVRLLQILEETRNTDSTIKTVVFSQWTSMLDLLEQPLAINKFQFTRLDGRMGRRQRE 1090

Query: 99   CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              +Q ++ +  + +          GLNL   G+ +V    WW      Q ++R+      
Sbjct: 1091 KALQAFDSDPAVTVFLISLKCGSLGLNLTA-GSQVVVLDPWWCPSAEDQAVDRV-----Y 1144

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G  R V V  +  ++T++E VL+  + K  +      A K+E
Sbjct: 1145 RLGQMRPVVVRSIFVRDTVEESVLKLQQAKRDLMQSTF-ASKEE 1187



 Score = 39.0 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 4   YHKFQRELYCDLQGENIEA----FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           Y +   + + +LQ    +      +     ++  Q  +     D   +W    +     L
Sbjct: 746 YRELSEQTFKELQRLMADVGKHYMSILELLLRLRQFCDHPSLVDSVMNWDNKGESTAARL 805

Query: 60  EVIIEKAN 67
           +  I+  N
Sbjct: 806 DAFIDSGN 813


>gi|145515018|ref|XP_001443414.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410792|emb|CAK76017.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1024

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 28/218 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEV------HD 53
           K Y +  +        ++ ++ + A  +  ++  ++ N    +        V        
Sbjct: 615 KIYDQINQRGVMTFDQQSGKSGSQALQNLMMQLRKICNHPYLFMLNLDMNRVTDEIWRSS 674

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K + L+ II K       +++       +  ++  F                +     I
Sbjct: 675 GKFELLDRIIPKLLYFKHRLLIFSQMTQLMDIMEAFFEYRGWRYLRLDGSTKSEDRESRI 734

Query: 102 QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           Q +N       +      + G GLNLQ   + +V F   W+      M++     R  + 
Sbjct: 735 QLFNQENSIYNIFLLSTRAGGLGLNLQS-ADTVVLFDSDWNP-----MMDLQAQDRAYRI 788

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G K  V V  LI    I+  +L +   K  +  +++ A
Sbjct: 789 GQKNEVRVLRLITATQIEGNILSKAEHKMGLDAVIIQA 826


>gi|71410996|ref|XP_807766.1| DNA excision repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70871837|gb|EAN85915.1| DNA excision repair protein, putative [Trypanosoma cruzi]
          Length = 1118

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K++ L+ ++   +     ++V       L  ++    Q            +       
Sbjct: 802 SGKLQTLQKLLTVWQRGGQRVLVFSQTRMALDIIENMCEQEGFKYIRMDGSTSGHHRQEL 861

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  +NE    +        G       G N +V F   W+      + +     R  + G
Sbjct: 862 MDRFNEDDSIVAALLTTRVGGVGVNLVGANRVVLFDPDWNP-----VTDEQARERAWRIG 916

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V VY LIA  T++E +L+R   K+ + + +L+
Sbjct: 917 QTRDVGVYRLIASGTVEEAILRRQLAKTYVTEKVLH 952


>gi|330918867|ref|XP_003298372.1| hypothetical protein PTT_09092 [Pyrenophora teres f. teres 0-1]
 gi|311328410|gb|EFQ93512.1| hypothetical protein PTT_09092 [Pyrenophora teres f. teres 0-1]
          Length = 1029

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKI 109
             +  K      IV   F S L  ++                 T  +   +I  +     +
Sbjct: 868  KLRSKKQTLKSIVFSQFTSMLQLIEWRLRRAGFNTVMLDGSMTPAQRQKSIDHFMTNPDV 927

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 928  EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 981

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            L  +++++  ++     K+ +    +N  K
Sbjct: 982  LCVEDSVESRMVALQEKKAAMIAGTINNDK 1011


>gi|290976692|ref|XP_002671073.1| predicted protein [Naegleria gruberi]
 gi|284084639|gb|EFC38329.1| predicted protein [Naegleria gruberi]
          Length = 998

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 28/197 (14%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIKALEVIIEKAN- 67
             DL  +  +A        +  ++ +  +         E       K + ++ ++EK N 
Sbjct: 679 MDDLDDKQRKAME-----RRLKKIQDDLIKERIRNEPIEQLISSSVKAQLVKHLVEKCNE 733

Query: 68  -AAPIIVAYHFNSDLARLQKAFPQGRT-----------LDKDPCTIQEWN-EGKIPLLFA 114
               +++   +   L  +       +                   + E+N   KI     
Sbjct: 734 EGHRVLIFSQYTRMLDIIGHVLKSMKVKFNRIDGSVTRHQDRTQLVDEFNENEKIKCFIL 793

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL    + ++     ++    +Q ++R       + G K  V VY LI+  
Sbjct: 794 SSQAGGVGLNLVS-ASRVIIVDANFNPSIDEQSVDRC-----YRIGQKENVIVYRLISAG 847

Query: 175 TIDELVLQRLRTKSTIQ 191
           TI+E + +R  +K+T+ 
Sbjct: 848 TIEEYIYKRQVSKTTVS 864


>gi|171688350|ref|XP_001909115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944137|emb|CAP70247.1| unnamed protein product [Podospora anserina S mat+]
          Length = 961

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 50  EVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
           E    K +AL  I++   K   + +I+   + S L                        K
Sbjct: 785 ETKSSKTEALLKILQATLKKEGSKVIIFSQWTSFLNVIQRQLDEAGYTYTRIDGSMNATK 844

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I+    +    ++ A  A C  GLNL    + +V    WW        IE   V R
Sbjct: 845 RDVAIKALDEDPNTRIMLASLAVCSVGLNLVS-ADTVVLADSWWAPA-----IEDQAVDR 898

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G  R   V+ L+ + T++E VL     K  +      
Sbjct: 899 VHRLGQTRETTVWRLVMEGTVEERVLDIQAEKRELVGKAFQ 939


>gi|149238518|ref|XP_001525135.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450628|gb|EDK44884.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 421

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLAR 83
           ++  +        +   +      +   KIK LE I++         +++   F   L  
Sbjct: 212 AELNRLCVQFPHTLKKWQLPEDAFLDSGKIKTLESILKTIIVERREKVLIFSLFTQMLDI 271

Query: 84  LQK----------AFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           L++              G  +++   TI   + +  IP+      + G G+NL    N +
Sbjct: 272 LEQVLSVFKYKFVRLDGGTRVEERQETIDLFYQDDSIPVFLLSTKAGGFGINLVA-ANNV 330

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + +   ++  +     ++    R  + G K+ V VY L++  TI+  ++   + K  +  
Sbjct: 331 ISYDQSFNPHD-----DKQAEDRAHRVGQKKEVTVYKLVSDKTIEINMMMLAQNKLQLDA 385

Query: 193 LLLNALKKETIH 204
            + +   +  I 
Sbjct: 386 SMSDETSETKIE 397


>gi|322504140|emb|CAM36456.2| putative DNA excision/repair protein SNF2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 731

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 39/197 (19%)

Query: 34  QLANGAVY--YDEEKHWKEVHD---------------EKIKALEVII--EKANAAPIIVA 74
           Q+ N       DE       H+                K+     +I    +     +V 
Sbjct: 330 QICNHPWLSLVDEAFAAALAHNPYEAPVAEIGDIFGGAKLWVALQLILRCVSERRKTLVF 389

Query: 75  YHFNS----------DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
                          +          G   ++    +  +N    + +        G GL
Sbjct: 390 SRSKRLLHLLSFLLREWRLTHTQVDGGTPSERRCAEVDRFNSNAGVWVCLLTTQVGGVGL 449

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 + +V     W+        +   V R  + G +R V V+ L+   T++E V + 
Sbjct: 450 TF-SAASAVVLLDPSWNPSA-----DAQAVDRVHRIGQQRNVVVFRLVTCGTVEEKVYRN 503

Query: 184 LRTKSTIQDLLLNALKK 200
              K       L + K 
Sbjct: 504 QIFKRM---AALQSTKG 517


>gi|154331301|ref|XP_001561469.1| DNA excision/repair protein SNF2 [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 731

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 39/197 (19%)

Query: 34  QLANGAVY--YDEEKHWKEVHD---------------EKIKALEVII--EKANAAPIIVA 74
           Q+ N       DE       H+                K+     +I    +     +V 
Sbjct: 330 QICNHPWLSLVDEAFAAALAHNPYEAPVAEIGDIFGGAKLWVALQLILRCVSERRKTLVF 389

Query: 75  YHFNS----------DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
                          +          G   ++    +  +N    + +        G GL
Sbjct: 390 SRSKRLLHLLSFLLREWRLTHTQVDGGTPSERRCAEVDRFNSNAGVWVCLLTTQVGGVGL 449

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 + +V     W+        +   V R  + G +R V V+ L+   T++E V + 
Sbjct: 450 TF-SAASAVVLLDPSWNPSA-----DAQAVDRVHRIGQQRNVVVFRLVTCGTVEEKVYRN 503

Query: 184 LRTKSTIQDLLLNALKK 200
              K       L + K 
Sbjct: 504 QIFKRM---AALQSTKG 517


>gi|189198105|ref|XP_001935390.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187981338|gb|EDU47964.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1116

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                ++D        +  I ++     + G GLNL    N +      ++     Q ++R
Sbjct: 995  MTRENRDKSMQALREDPSIRVMLVSIGAGGLGLNLTT-ANKVFMMEPQFNPAAEAQAVDR 1053

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +      + G  R V +   I + + +E +L+    K  + D+ ++  +K
Sbjct: 1054 V-----HRLGQDREVTIKRFIMEGSFEEKMLELQNKKRDLADMTMSKERK 1098


>gi|312211271|emb|CBX91356.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1199

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KAFPQG 91
            +   +     K+    +    +N   +++  H    L  L+                  
Sbjct: 642 NQSQSEFCGKWKVLRRMLDFWHSNGDKVLIFSHSVRLLRLLKGLFDVYGTKYNFSYLDGS 701

Query: 92  RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++    + ++N      +      + G GLN+    N +V     W+        + 
Sbjct: 702 MKYEERSKAVADFNADANQFVFLISTKAGGVGLNITS-ANKVVIMDPNWNPAH-----DL 755

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               R  + G  R V V+ L++  T++E+V  R   K    +
Sbjct: 756 QAQDRAYRIGQTRDVEVFRLVSSGTVEEVVYARQIYKQQQAN 797


>gi|297202132|ref|ZP_06919529.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148045|gb|EDY57603.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 747

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------------- 95
              K+  L  I+ +   N    +V  HF   L  +++A     T                
Sbjct: 550 KSAKLDRLLEIVREAGENGQKTVVFSHFKDVLNVVREALATAHTDGTALFGPLTGSVPAG 609

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + ++ +   P +L A   + G GLN+Q   +++V              IE   V 
Sbjct: 610 RRQQMVDDFADVPGPAVLVAQIQAAGVGLNMQA-ASVVVICEPQIKPT-----IEHQAVA 663

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R  + G  R V VY L+A   +DE +++ L TK+ + D 
Sbjct: 664 RAHRMGQVRPVRVYRLLATGGVDERLVKLLETKTRLFDA 702


>gi|320592092|gb|EFX04531.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 992

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 69  APIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              I+   F + L  ++                 T  +   +I+ +     +        
Sbjct: 839 HKSIIFSQFTTMLQLIEWRLRRAGITTVMLDGSMTPAQRQASIEYFKENVDVECFLVSLK 898

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G  R   V  L  +++++
Sbjct: 899 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRPCVVTRLCIEDSVE 952

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
             ++     K+ + +  +N+
Sbjct: 953 SRMVMLQEKKTKMINSTINS 972


>gi|260806897|ref|XP_002598320.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
 gi|229283592|gb|EEN54332.1| hypothetical protein BRAFLDRAFT_204851 [Branchiostoma floridae]
          Length = 490

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 97  DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + +N     +  L      + G G+NL  G N ++ F   W+     Q I R+  
Sbjct: 368 RERWAEIFNSPDNERARLFLISTRAGGLGINL-VGANRVIIFDASWNPSHDVQSIFRV-- 424

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G  + VFVY  +AQ T++E +  R  TK ++   +++ 
Sbjct: 425 ---YRFGQGKPVFVYRFLAQGTMEEKIYDRQVTKQSLAARVVDE 465


>gi|299117109|emb|CBN73880.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2864

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFS 136
            +  R            K    I  +N+ +     +      +   G+NL    N +V   
Sbjct: 2533 ENGRQYFRIDGETPSKKRQQLISRFNDPERKSTGVFLLSTKAGNMGINLVA-ANRVVLMD 2591

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRLRTKSTIQDLLL 195
              W+        +   + R  + G K+ V V+ L+  N +++  +  +   K  +   ++
Sbjct: 2592 TSWNPAN-----DLQAMFRCYRFGQKKPVQVFRLVMGNKSLEYKIHNKQVAKHALAGRVV 2646

Query: 196  NA 197
            +A
Sbjct: 2647 DA 2648


>gi|317026301|ref|XP_001389337.2| chromatin remodeling complex subunit (Chd3) [Aspergillus niger CBS
           513.88]
          Length = 1282

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 71/209 (33%), Gaps = 31/209 (14%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDE-----------EKHWKEVHDEKIKALEVIIEKA 66
           +  E  N  +  ++  +       Y                       K + LE+++ K 
Sbjct: 697 KQTEKHNLNNILMQLRKCLCHPFVYSRAIEEKTSNAAVSHRHLVDAAAKFQLLELMLPKL 756

Query: 67  N--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL-- 112
                 +++   F  +L  ++                 +  +   TI  +N  + P    
Sbjct: 757 KNRGHRVLIFSQFLENLDIIEDFLEGVGLTYLRLDGRMSSLEKQKTIDAYNAEESPYFAF 816

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G G+NL    + ++     ++  +         ++R  + G K  V V+ L+ 
Sbjct: 817 LLSTRSGGVGINL-ATADTVIIMDPDFNPHQDM-----QALSRAHRIGQKNKVLVFQLMT 870

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + + +E ++Q  + K  +  +L++ +  E
Sbjct: 871 RASAEEKIMQIGKKKMVLDHVLIDRMVSE 899


>gi|193671687|ref|XP_001946103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Acyrthosiphon pisum]
          Length = 848

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 32  CLQLANGAV----YYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQ 85
             +L            +      +   K K L  I+         +++   F   L  L+
Sbjct: 645 LHKLCTDYRCLSKLGYDLPIQMFLDSGKFKLLNEILPDLKDRGHRVLIFSQFLQILDLLE 704

Query: 86  KAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                             + +    I  +N +  +        + G G+NL    + ++ 
Sbjct: 705 IYMSHYGHSYLRLDGSTQVQERQLMIDLYNMDESLFAFLLSTKAGGLGINLTA-ADTVII 763

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + ++        ++    R  + G  + V V   I++++++E + +  + K  ++  +
Sbjct: 764 HDIDYNP-----YNDKQAEDRCHRVGQTKPVKVIKFISKDSVEESMFKVAQDKLNLEQQV 818


>gi|163854526|ref|YP_001628824.1| helicase, putative [Bordetella petrii DSM 12804]
 gi|163258254|emb|CAP40553.1| helicase, putative [Bordetella petrii]
          Length = 1246

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 36/226 (15%)

Query: 2    KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYY------DEEKHWKEVHDE 54
            K Y               I  F N          +      +       E          
Sbjct: 854  KLYASAIESFKARKDPGAISPFKNMLGLLHYLRLICTDPRRHGLTAPNPEPLKQYREKSP 913

Query: 55   KIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQ-----------------GRTLD 95
            K+  L   +   +     +I+   F +    L+    +                 G    
Sbjct: 914  KLDWLLEQLKLIQKKDEKVIIFCEFRNIQRLLRHYIEEQFNIFPPIINGDTSATAGHADS 973

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +         +   P + G G+N+Q   N ++ ++  W+  +     E     R
Sbjct: 974  RQRQIKKFQEAAGFGAIILSPVAVGFGVNIQA-ANHVIHYTRTWNPAK-----EDQATDR 1027

Query: 156  QRQAGFKRAVFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K+ V+VYY + +     T D  + Q L  K  +   +LN 
Sbjct: 1028 AYRIGQKKDVYVYYPVVKADDFATFDVKLDQLLTRKRELAGDMLNG 1073


>gi|124360542|gb|ABN08552.1| SNF2-related; Zinc finger, RING-type; ATP-requiring DNA helicase
           RecQ [Medicago truncatula]
          Length = 844

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 23/155 (14%)

Query: 52  HDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
              K+  L  ++ ++         +V   F   L  L++                   + 
Sbjct: 668 SSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTMNAKQR 727

Query: 98  PCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
              I+++   ++    +L A   +   G+NL    + +     WW+       +E   + 
Sbjct: 728 AQVIEQFQLSEVDEPMILLASLRASSTGINLTA-ASRVYLMEPWWNPA-----VEEQAMD 781

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           R  + G K  V +  LIA+N+I+E +L     K  
Sbjct: 782 RVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKK 816



 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 33/139 (23%), Gaps = 12/139 (8%)

Query: 2   KQYHKFQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y + + E+   +                 S  ++  Q+         +          
Sbjct: 488 KLYDEVKEEIKSLMMHHNSNDRLVSSYSTVLSMILRLRQICADFSMVPLDFKSCLFSS-- 545

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
              +E I    +         F+     + K     +TL +     +++     P+  + 
Sbjct: 546 -TDIEGIEMNQSGCIFCYIRKFSFAGNHVSKNPELLQTLIRMLQDGEDF---DCPICLSP 601

Query: 116 PASCGHGLNLQYGGNILVF 134
           P                + 
Sbjct: 602 PTDIVITCCAHIFCRECIL 620


>gi|302837269|ref|XP_002950194.1| hypothetical protein VOLCADRAFT_117484 [Volvox carteri f.
            nagariensis]
 gi|300264667|gb|EFJ48862.1| hypothetical protein VOLCADRAFT_117484 [Volvox carteri f.
            nagariensis]
          Length = 1735

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 21/145 (14%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNE-----GKIPL 111
                +++   F   L  L+                         I  +           +
Sbjct: 1491 EGRRVLIFSQFVIMLNVLEDYCNAVGFPVERIDGSIQGRDRQRAIDRFCAEGEGSDGAFV 1550

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                  + G G+ L    +  + +   W+ +      +   + R  + G K+ V VY LI
Sbjct: 1551 FLLSTRAGGQGITLTA-ADTCIIYDSDWNPQN-----DLQAMARCHRIGQKKEVTVYRLI 1604

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLN 196
            +++T +  +      K  + + +L 
Sbjct: 1605 SRDTYEMALFNSASRKYGLDEAILG 1629


>gi|255553699|ref|XP_002517890.1| conserved hypothetical protein [Ricinus communis]
 gi|223542872|gb|EEF44408.1| conserved hypothetical protein [Ricinus communis]
          Length = 870

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DP 98
            H  K++ALE ++    +    +++  +    L    +    +G +  +           
Sbjct: 534 KHCGKMRALEKLMCSWASRGDKLLLFSYSVRMLDILEKFVIRKGYSFSRLDGSTPTNLRQ 593

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N      +      + G GLNL    N +V F   W+        +     R  
Sbjct: 594 SMVDDFNSSPSKQVFLISTRAGGLGLNLVS-ANRVVIFDPNWNPA-----YDLQAQDRSF 647

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G KR V V+ L+A  + +ELV  R   K  + ++ ++ 
Sbjct: 648 RFGQKRHVVVFRLLAAGSFEELVYSRQVYKQQLSNIAVSG 687


>gi|259907267|ref|YP_002647623.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
            Ep1/96]
 gi|224962889|emb|CAX54370.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
            Ep1/96]
 gi|283477080|emb|CAY72980.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
            12163]
          Length = 1081

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 31/205 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            +G             K   +       + E  ++E H  K+  +   ++    +      
Sbjct: 866  EGMQEAGTGMLGLLHKLKLICAHPFSVNPEPGYRE-HSPKLNWMLHTLDGIKRSGEDKVI 924

Query: 76   HFNS--DLARLQKAFPQGRTLDK-----------------DPCTIQEWNE-GKIPLLFAH 115
             F    DL R  +     R   +                     I ++       ++   
Sbjct: 925  VFTELRDLQRELQHAIYQRFGFRPVIINGDTSTKSNSQNSRQKLIDDFQSQPGFDVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +     E     R  + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAK-----EDQATDRAYRIGQTKDVYVYYPTVRDS 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLLN 196
               T +E + + L  + ++   +L+
Sbjct: 1039 EVTTFEETLDELLNRRRSLARDMLS 1063


>gi|255552930|ref|XP_002517508.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223543519|gb|EEF45050.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1138

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQK---------------AFPQGRTLDKDPC 99
            K     +++ +A    ++V   +   L  +                        + +   
Sbjct: 929  KFLMEIILLSEAMKERVLVFSQYLDPLKLIAMQLESRFHWIQGKEILHMHGKLDMGERQS 988

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+++N+   +  ++ A   +C  G+NL  G + +V   + W+         R  ++R  
Sbjct: 989  LIKDFNDRKSEAKVMLASTKACSEGINL-VGASRVVLLDVVWNPSVV-----RQAISRAY 1042

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            + G ++ V++Y+LIA  T++E    R   K  + +L+ ++  +
Sbjct: 1043 RLGQEKVVYIYHLIASETLEEDKYCRQAEKERLSELVFDSSDR 1085


>gi|148666355|gb|EDK98771.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1`, isoform
            CRA_a [Mus musculus]
          Length = 1032

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 13   CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
               +   +          K  Q     +   +      +   K +AL  I+ +       
Sbjct: 823  LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRALGCILSELKQKGDR 878

Query: 71   IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
            +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 879  VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 938

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 939  GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 992

Query: 180  VLQRLRTKSTIQDLL 194
            +L+  + K  ++  +
Sbjct: 993  MLKINQQKLKLEQDM 1007


>gi|302665600|ref|XP_003024409.1| hypothetical protein TRV_01372 [Trichophyton verrucosum HKI 0517]
 gi|291188462|gb|EFE43798.1| hypothetical protein TRV_01372 [Trichophyton verrucosum HKI 0517]
          Length = 974

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  +       +      
Sbjct: 820 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMKNVDTEVFLVSLK 879

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 880 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 933

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 934 SRMVLLQEKKANMINGTINKDQSEALE 960


>gi|225427375|ref|XP_002279753.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1084

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNIL 132
            YHF+  + +        R + +   +I  +N+   ++ +L A   +C  G++L  G + +
Sbjct: 912  YHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGISL-VGASRV 970

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            +   + W+       +ER  ++R  + G ++ V++Y+L+   T++E    R   K  + +
Sbjct: 971  ILLDVVWNPS-----VERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSE 1025

Query: 193  LLLNALKK 200
            L+ ++  K
Sbjct: 1026 LVFSSKDK 1033


>gi|281202078|gb|EFA76283.1| RUN domain-containing protein [Polysphondylium pallidum PN500]
          Length = 1467

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 25/166 (15%)

Query: 51   VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLAR---------------LQKAFPQG 91
            V   K+  L   I +       A I++   + + L R                ++   + 
Sbjct: 1282 VPSTKLTLLMEQINETLSKEKGAKIVIFSQWTTMLDRIEEIFVENRWSESGKYERFDGKM 1341

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                K         EG   ++     + G G+NL    N +     WW++       E  
Sbjct: 1342 SAKQKKAALENFQMEGGPVVMLISLKAGGVGINLTR-ANKVFLVDPWWNVAA-----ENQ 1395

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  + G  + V V  LI   +I+E +L+   TK  +   +L+ 
Sbjct: 1396 AIDRLHRIGQTKPVTVKKLIITRSIEERILELQETKEVMTQAILDD 1441


>gi|255081825|ref|XP_002508131.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523407|gb|ACO69389.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2064

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFA--HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G  L      I ++N              + G G+NL    + +V +   ++       I
Sbjct: 947  GTPLADRQRVIVDFNTPGSDTFLLLISTRAGGQGVNL-ATADTIVLYDPDFNP-----FI 1000

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +    +R  + G  R V VY L+   T++E ++   ++K  I+ L++  ++ 
Sbjct: 1001 DSQAQSRAHRMGQTREVAVYQLVTAKTVEEKIVSMAKSKLAIERLVVKDVRA 1052


>gi|195453451|ref|XP_002073794.1| GK12953 [Drosophila willistoni]
 gi|194169879|gb|EDW84780.1| GK12953 [Drosophila willistoni]
          Length = 1069

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 52   HDEKIKALEVIIEK-----ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
               K+  +  I++       +    I+   +   L  L+    + +           +  
Sbjct: 895  PSSKMLKIIEILKTSIFRGKSNDKAIIVSQWTGVLDILRDHLEKDKFDTLSLNGTIPVKS 954

Query: 97   DPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + ++N+      +L     + G GLNL  G N L+   L W+ +   Q  +RI   
Sbjct: 955  RQDIVNQFNDPRNPKRILLLSLTAGGVGLNL-IGANHLLLLDLHWNPQLECQAQDRI--- 1010

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + G K+ V +Y  +   T++E +      K  + + +L   K
Sbjct: 1011 --YRVGQKKDVVIYKFMCLETVEERIKALQDRKLELAEGVLTGAK 1053



 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 5/58 (8%), Positives = 15/58 (25%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y   Q+        + +++ +     ++  Q+       D              + E 
Sbjct: 760 YKMHQKFAKMAGSKKEVKSHDILVLLLRLRQICCHPGLIDSMLEDNGADKMANNSSEE 817


>gi|193678803|ref|XP_001948361.1| PREDICTED: transcription termination factor 2-like isoform 1
            [Acyrthosiphon pisum]
 gi|328713458|ref|XP_003245082.1| PREDICTED: transcription termination factor 2-like isoform 2
            [Acyrthosiphon pisum]
          Length = 1133

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 64/243 (26%)

Query: 15   LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------- 52
            +  ++I+  +     ++  QL             + +                       
Sbjct: 872  VNNKSIQTHHILVLILRLRQLCCHPCLLKNMLEDECLKTDGIQNNGDLDIVDKLSRMSIG 931

Query: 53   ---------------------DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAF 88
                                   KIKA+  ++++         ++   + S L  + K  
Sbjct: 932  IPNIENDTVKNSNVIFNEKWISSKIKAVCDMVKEKVLHTDDKAVIVSQWPSVLNLVNKQL 991

Query: 89   PQGRTLDK----------DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             Q     +              I E+++  G   +L     + G GLNL    N L    
Sbjct: 992  SQYNVKTEIFSGAVPVLLRNKIISEFDKVRGGPKILLLSLTAGGVGLNL-VVANHLFLVD 1050

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + W+ +   Q  +RI      + G ++ V VY  I  NTI+  + +    K  I + +  
Sbjct: 1051 IHWNPQLEAQACDRI-----YRVGQQKPVNVYKFICDNTIESSIQKIQTQKLEIANNIFG 1105

Query: 197  ALK 199
              +
Sbjct: 1106 GSR 1108


>gi|62543565|ref|NP_031984.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Mus
           musculus]
 gi|29427670|sp|Q04692|SMRCD_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1; AltName: Full=ATP-dependent helicase SMARCAD1;
           AltName: Full=Enhancer trap locus homolog 1; Short=Etl-1
          Length = 1021

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              +   +          K  Q     +   +      +   K +AL  I+ +       
Sbjct: 812 LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRALGCILSELKQKGDR 867

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 868 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 927

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 928 GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 981

Query: 180 VLQRLRTKSTIQDLL 194
           +L+  + K  ++  +
Sbjct: 982 MLKINQQKLKLEQDM 996


>gi|310765239|gb|ADP10189.1| Non-specific serine/threonine protein kinase [Erwinia sp. Ejp617]
          Length = 1081

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 31/205 (15%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
            +G             K   +       + E  ++E H  K+  +   ++    +      
Sbjct: 866  EGMQQAGTGMLGLLHKLKLICAHPFSVNPEPGYRE-HSPKLNWMLHTLDGIKRSGEDKVI 924

Query: 76   HFNS--DLARLQKAFPQGRTLDK-----------------DPCTIQEWNE-GKIPLLFAH 115
             F    DL R  +     R   +                     I ++       ++   
Sbjct: 925  VFTELRDLQRELQHAIYQRFGFRPVIINGDTSTKSNSQNSRQKLIDDFQSQPGFDVIILS 984

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN- 174
              + G G+N+Q   N ++ F+  W+  +     E     R  + G  + V+VYY   ++ 
Sbjct: 985  TVAVGFGVNVQK-ANHVIHFTRCWNPAK-----EDQATDRAYRIGQTKDVYVYYPTVRDS 1038

Query: 175  ---TIDELVLQRLRTKSTIQDLLLN 196
               T +E + + L  + ++   +L+
Sbjct: 1039 EVTTFEETLDELLNRRRSLARDMLS 1063


>gi|150864093|ref|XP_001382790.2| ATPase/DNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|149385349|gb|ABN64761.2| ATPase/DNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 1127

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-------------K 86
            +Y  +           I  L  I +      +IV   F+S L  L+              
Sbjct: 941  IYLYDPDKSSSKIQALITHLRTIRDSNPGEKVIVFSQFSSYLDILENELKIQGGRDFVIH 1000

Query: 87   AFPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             F     L +    + ++N+      + +L     + G GLNL    +       WW   
Sbjct: 1001 KFDGRLQLSERQKVLDKFNDNTGHDGVTILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1059

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+RI      + G    V V   I  N+I+  +L+    K  I +++
Sbjct: 1060 VEDQAIDRI-----HRIGQNETVKVVRFIMSNSIETKMLKIQERKKQIGEIV 1106


>gi|325675298|ref|ZP_08154983.1| helicase [Rhodococcus equi ATCC 33707]
 gi|325554004|gb|EGD23681.1| helicase [Rhodococcus equi ATCC 33707]
          Length = 585

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 21/206 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     E   D  G  IE      +      Q+ N       E         K+    
Sbjct: 358 EIYDVLLAEAVDDGFGAGIERHGRVLAVLTALKQVCNHPGLITGEMDSLAGRSGKLDLCT 417

Query: 61  VII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-E 106
            I+       +P ++   +      L +               G    +    +  +  E
Sbjct: 418 DIVATNMETGSPTLIFTQYRRTGEMLVRHLAEQFDVAAPFLHGGLRQSERAEIVSRFQSE 477

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+L     + G GL L    + +V F  WW+       +E     R  + G  R V 
Sbjct: 478 DGPPVLVLSLRAAGTGLTLTRAAD-VVHFDRWWNPA-----VEAQASDRAHRIGQTRTVT 531

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           V  L +  T++E +      K+ + D
Sbjct: 532 VTTLTSTTTVEEHIAGMHGRKAALTD 557


>gi|195111727|ref|XP_002000429.1| GI22534 [Drosophila mojavensis]
 gi|193917023|gb|EDW15890.1| GI22534 [Drosophila mojavensis]
          Length = 1070

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDP 98
               K+  +  I++          IV   + S L   +           +      +    
Sbjct: 899  PSTKLLKVLEILKTNVLKTKDKAIVVSQWTSVLDIFRDLLEKEKLKSLSLNGTIPVKNRQ 958

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N+      +L     + G GLNL  G N L+   L W+ +      E     R 
Sbjct: 959  DIVNDFNDPNNSNRILLLSLTAGGVGLNL-IGANHLILLDLHWNPQL-----EAQAQDRI 1012

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G K+ V +Y ++  +T+++ +      K  + D +L
Sbjct: 1013 YRVGQKKDVIIYKIVCVDTVEQRIKALQDRKLELADGVL 1051



 Score = 42.0 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 4/71 (5%), Positives = 20/71 (28%), Gaps = 5/71 (7%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++        + +++       ++  Q+         +  +E     +   +    
Sbjct: 783 YKMHEKFSRMAGHNKEVKSHEILVLLLRLRQICCHPGLIDSMLEEEGTGKMDDDSDSYTP 842

Query: 59  LEVIIEKANAA 69
              ++ + N  
Sbjct: 843 EIDLLAQLNKM 853


>gi|169620543|ref|XP_001803683.1| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
 gi|160704055|gb|EAT79355.2| hypothetical protein SNOG_13471 [Phaeosphaeria nodorum SN15]
          Length = 900

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 40/221 (18%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------EEKHWKE 50
           R    ++    +      +  ++     N    +                   E      
Sbjct: 590 RAATFEIAKRQLMQKKLGNPIMQLRLCCNSPYNFFNPFLKADTDGAETFASETEPDETLV 649

Query: 51  VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
               K+  L+ ++ +       +++   F + L                           
Sbjct: 650 STSGKMLLLDSLLPELISRGHKVLIFSQFTTTLDLLGQYLDLRSWPHARIDGSVAQTDRQ 709

Query: 99  CTIQEWNEGKIP----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             I  +N+        +      + G G+NL    + ++ F   W+ ++     +   + 
Sbjct: 710 SQILAFNKTDKKNATNIFILSTRAGGQGINL-AAADTVILFDSDWNPQQ-----DLQAMD 763

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G  R V VY    +NT+++ +L+    K  ++ L++
Sbjct: 764 RAHRIGQTRNVIVYRFATRNTVEQKLLESAEAKRRLEKLVI 804


>gi|297737996|emb|CBI27197.3| unnamed protein product [Vitis vinifera]
          Length = 1638

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHG 122
                  ++      +++  +        ++      I  +N+ K   +      SCG G
Sbjct: 540 FSFQHRVLLTGTPLQNNIGEMYNLVDGSVSVADRQAAIARFNQDKTRFVFLLSTRSCGLG 599

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL    + ++ +   ++        +   + R  + G    + VY L+ + +++E +LQ
Sbjct: 600 INL-ATADTVIIYDSDFNP-----HADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQ 653

Query: 183 RLRTKSTIQDLLLN 196
             + K  +  L +N
Sbjct: 654 LAKKKLMLDQLFVN 667


>gi|294654788|ref|XP_456864.2| DEHA2A12276p [Debaryomyces hansenii CBS767]
 gi|199429151|emb|CAG84839.2| DEHA2A12276p [Debaryomyces hansenii]
          Length = 771

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 31/194 (15%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKE-----------VHDEKIKALEVIIEK--ANAAPIIVA 74
             ++   + N    + E                  +  K K L+ ++++  +    +++ 
Sbjct: 491 LIIQLRNICNSPYIFYEPFEPYSNKDAQFMDLLLRNSSKFKVLQQLLDELLSKNHKVLIF 550

Query: 75  YHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHG 122
             F   L  +                          I E+N       +      + G G
Sbjct: 551 SQFTKVLDLINDWLVYENVEICRLDGSMNQSDREEEITEFNAKNSKQQVFLLSTRAGGLG 610

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NL    + ++ F   W+ +     I+   + R  + G  + V +Y  + +N+I+E+++ 
Sbjct: 611 INLTA-SDTVIIFDNDWNPQ-----IDLQAIDRVHRIGQTKPVKIYRFLIKNSIEEILIS 664

Query: 183 RLRTKSTIQDLLLN 196
           +  +K  ++ +++ 
Sbjct: 665 KSYSKRFLEKIIIQ 678


>gi|291401419|ref|XP_002717032.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 [Oryctolagus cuniculus]
          Length = 1027

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 840  HINNFQLDMDLILDSGKFRVLGHILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 899

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 900  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 954

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 955  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|164659924|ref|XP_001731086.1| hypothetical protein MGL_2085 [Malassezia globosa CBS 7966]
 gi|159104984|gb|EDP43872.1| hypothetical protein MGL_2085 [Malassezia globosa CBS 7966]
          Length = 789

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-----------K 86
             + +          D  ++ L+    ++     IV   F S L  ++           +
Sbjct: 631 HGIIWGMPGTMSTKLDMMLRLLDDFDNQSKGDKTIVFSQFTSFLDLVEDALRARGYNFTR 690

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                R   ++    +   +  + ++     +   GLNL    N ++   LWW+ +    
Sbjct: 691 YDGSMRRNAREEALQRIRTDDGVRVILISFKAGSTGLNLT-CCNRVILCDLWWNPQ---- 745

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            IE     R  + G  ++V++Y L    T+++ +L   
Sbjct: 746 -IEEQAFDRAHRLGQTKSVYIYKLSIDGTVEQRILALQ 782



 Score = 36.3 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 3/42 (7%)

Query: 4   YHKFQRELYCDLQGENIEAFN---SASKTVKCLQLANGAVYY 42
           YH+ +  +   L        N   +    ++  Q  N     
Sbjct: 520 YHELEDRIQSHLDANKSPQLNYMGALVMLLRLRQACNHPALV 561


>gi|296195978|ref|XP_002745629.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1 isoform 1 [Callithrix jacchus]
 gi|296195980|ref|XP_002745630.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1 isoform 2 [Callithrix jacchus]
          Length = 1027

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 840  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 899

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 900  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 954

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 955  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|269128789|ref|YP_003302159.1| SNF2-like protein [Thermomonospora curvata DSM 43183]
 gi|268313747|gb|ACZ00122.1| SNF2-related protein [Thermomonospora curvata DSM 43183]
          Length = 746

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQ 102
             K++ L  ++++   N   ++V   F   LA +Q+              +  +    + 
Sbjct: 557 SAKLQRLCELVKEAEENGHKVVVFSFFRDVLATVQRALGPAALGPLTGSLSAARRQQLVD 616

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           E+       +L +   + G GLNLQ   ++++               E   V R  + G 
Sbjct: 617 EFTAHPGHAVLLSQIQAGGVGLNLQA-ASVVIICEPQLKPTL-----EAQAVARAHRMGQ 670

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R V V+ L+  +++D+ +++ LR KS + D 
Sbjct: 671 VRKVQVHRLLVADSVDQRIMELLRHKSALFDE 702


>gi|294955608|ref|XP_002788590.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239904131|gb|EER20386.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 857

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 29/205 (14%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIK----ALEVIIEK 65
            G++ +  N A+      +L N      +    K           KI+     +E + + 
Sbjct: 641 DGDDADDGNLAACMSGLRELQNDPRLPRKHSILKRAPVANFESSSKIEALVAEVEAMRKA 700

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEW---NEGKIPLL 112
              A  +V   F S L   Q    +             L      ++ +   +    PLL
Sbjct: 701 DGEAKGLVFSSFVSLLELCQYRLHKAGITTLILHGELPLPLRAKVMKTFVESSADTCPLL 760

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNLQ   N +     WW+    Q         R  + G  + V V  ++ 
Sbjct: 761 LISLMSGGEGLNLQ-VANHVFLLDPWWNPAVEQ-----QATQRAHRLGQSKRVQVLKMLT 814

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
            +TI++ ++     K  +   +++ 
Sbjct: 815 HDTIEDRIVALQEKKRAVCRGIIDG 839


>gi|238880168|gb|EEQ43806.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1097

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
               K +   K+  L  I+++        +++   F   L  L++                
Sbjct: 932  GDEKFLDSGKVIELGKILQQIIDNKGEKVLIFSLFTQVLDILERVLSIFNYKFARLDGNT 991

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + +    I  +N + KI +      + G G+NL    N ++ F   ++        ++ 
Sbjct: 992  PVQERQDLIDLFNQDDKIHIFLISTKAGGVGINLVA-ANHVIMFDQSFNP-----HEDKQ 1045

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 1046 AEDRAHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 1088


>gi|170085783|ref|XP_001874115.1| RAD5-like protein [Laccaria bicolor S238N-H82]
 gi|164651667|gb|EDR15907.1| RAD5-like protein [Laccaria bicolor S238N-H82]
          Length = 1156

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANA----APIIVAYHFNSDLAR----------LQKAFPQ 90
             +        K+ AL   + K          +V   F S L             Q  F  
Sbjct: 976  FRRNDFQSSTKLNALIKSLCKLRDQDPCFRAVVFSQFTSFLDLIQVALERERFDQYRFDG 1035

Query: 91   GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + K    I E+     K  +L     + G GLNL    N +     WW+     Q I
Sbjct: 1036 TMDVKKKSAAINEFKSFSRKGKVLVVSLKAGGVGLNLTA-ANHVFMMDCWWNAATENQAI 1094

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +R+      + G ++ V+V + I  NTI+  +LQ  + K+ I +      K +   +
Sbjct: 1095 DRV-----HRIGQEKTVYVTHFIVANTIESRILQIQKRKTAIVNEAFRGSKSDPESI 1146


>gi|255519616|dbj|BAA86436.2| KIAA1122 protein [Homo sapiens]
          Length = 1040

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 853  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 912

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 913  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 967

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 968  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1015


>gi|221507795|gb|EEE33382.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 2556

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+++N       +      + G G+NL    N +V 
Sbjct: 1233 YCHYRGWKYLRLDGSTNKFVRELDIRDFNSENSTYFVYLISTRAGGLGINLTS-ANHVVL 1291

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G +RAV V+ L+ + T++E +  R   K  +  LL
Sbjct: 1292 YDHDWNP-----FIDLQAIDRAHRIGQQRAVHVWSLVNEWTVEERMAFRREQKLRLDKLL 1346

Query: 195  LN 196
            + 
Sbjct: 1347 VQ 1348


>gi|221483307|gb|EEE21626.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 2556

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+++N       +      + G G+NL    N +V 
Sbjct: 1233 YCHYRGWKYLRLDGSTNKFVRELDIRDFNSENSTYFVYLISTRAGGLGINLTS-ANHVVL 1291

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G +RAV V+ L+ + T++E +  R   K  +  LL
Sbjct: 1292 YDHDWNP-----FIDLQAIDRAHRIGQQRAVHVWSLVNEWTVEERMAFRREQKLRLDKLL 1346

Query: 195  LN 196
            + 
Sbjct: 1347 VQ 1348


>gi|237839503|ref|XP_002369049.1| SNF2 family N-terminal domain containing protein [Toxoplasma gondii
            ME49]
 gi|211966713|gb|EEB01909.1| SNF2 family N-terminal domain containing protein [Toxoplasma gondii
            ME49]
          Length = 2556

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+++N       +      + G G+NL    N +V 
Sbjct: 1233 YCHYRGWKYLRLDGSTNKFVRELDIRDFNSENSTYFVYLISTRAGGLGINLTS-ANHVVL 1291

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G +RAV V+ L+ + T++E +  R   K  +  LL
Sbjct: 1292 YDHDWNP-----FIDLQAIDRAHRIGQQRAVHVWSLVNEWTVEERMAFRREQKLRLDKLL 1346

Query: 195  LN 196
            + 
Sbjct: 1347 VQ 1348


>gi|312216637|emb|CBX96587.1| similar to DNA repair protein rad5 [Leptosphaeria maculans]
          Length = 1192

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 68   AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHP 116
             A  +V   F S L  ++            F    +  +    + E+     P +L    
Sbjct: 1040 DAKTVVFSQFTSFLDLIEPALARDHIPFLRFDGSISQKQRAHILTEFTASPKPYVLLLSL 1099

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL    N +     WW        +E   + R  + G +R V V   + Q +I
Sbjct: 1100 RAGGVGLNLT-CANKVFMMDPWWSFA-----VEAQAIDRVHRMGQEREVKVVRFVVQGSI 1153

Query: 177  DELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            +E +L+    K  I     +++  +K    +
Sbjct: 1154 EEKMLRIQERKKFIASSLGMMSDEEKRVQRI 1184


>gi|319411618|emb|CBQ73662.1| probable RAD16-nucleotide excision repair protein [Sporisorium
            reilianum]
          Length = 1070

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIP 110
            +  +      +V   F + L  +                      ++           + 
Sbjct: 911  LRSEDKTIKSLVFSQFVNFLDLIAFRLQRAGFQICRLEGNMSPEARNRTIKHFMENPGVT 970

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      + G  LNL    + +     WW+     Q ++RI      + G  R + V  +
Sbjct: 971  VFLVSLKAGGVALNLTE-ASRVYLMDPWWNPSVEVQAMDRI-----HRLGQHRPIIVKRM 1024

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            + +N+I+  +++    KS + +  + 
Sbjct: 1025 VIENSIESRIIELQNKKSAMIEAAIG 1050


>gi|307107791|gb|EFN56033.1| hypothetical protein CHLNCDRAFT_22847 [Chlorella variabilis]
          Length = 480

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 57/211 (27%), Gaps = 38/211 (18%)

Query: 5   HKFQRELYCDLQGENIEAFN-------SASKTVKCLQL---ANGAVYYDEEKHWKEVHDE 54
            +  ++L      E +   +        AS     +Q+    N                 
Sbjct: 267 RELNQQLLDKTLNEEMNKMSRGRGGPSVASLNNVLMQMRKNCNHPDLITGPFDGSVFFPS 326

Query: 55  KIKALEVI-----------IEKANAAPIIVAYHFNSDLARL----------QKAFPQGRT 93
             + +                      +++     + L  L                   
Sbjct: 327 PEEMVRDCGKMALLDRLLTRLLPEGHKVLIFSQMTTMLDLLSSYLEQREVGHCRIDGSIC 386

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  ++ +N +    +      + G G+NL    +  + +   W+  +     +   
Sbjct: 387 WQDRQENMKRFNEDPDCKVFLLSTRAGGLGINLTA-ADTCIIYDSDWNPHQ-----DLQA 440

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           + R  + G ++ V V  L   ++++  +L+R
Sbjct: 441 MDRCHRIGQQKPVLVMRLATAHSVEGKMLRR 471


>gi|328854066|gb|EGG03201.1| hypothetical protein MELLADRAFT_90365 [Melampsora larici-populina
           98AG31]
          Length = 863

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQG----- 91
              +            K   L+ ++   K   A +++   +   +  L     Q      
Sbjct: 657 HRKHHYSADADTELCGKWLVLKPLLQQWKKEGAKVLIFSQWTKMMDILSYWLEQDFPGFV 716

Query: 92  ------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T ++     +   +    +  A   + G GLNL    N +V F   W+     
Sbjct: 717 RLDGKVPTAERMARVDEFQRDPDKFIFLASTLAGGVGLNLTA-ANKVVIFDPSWNPSS-- 773

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              +   + R  + G KR+V    LIA  T +EL+  R   K+ + +
Sbjct: 774 ---DAQAMDRVCRIGQKRSVECLRLIALGTAEELIYHRQVYKTHLAE 817


>gi|321468268|gb|EFX79254.1| hypothetical protein DAPPUDRAFT_188325 [Daphnia pulex]
          Length = 1009

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQY 127
            I  + FN D  RL                   +N     +  L      + G G+NL  
Sbjct: 782 PIGTWRFNHDYFRLDGQTSAEL----RKNACNAFNNPSNLRSRLFLISTKAGGLGINLVA 837

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             N ++ F   W+     Q I R+      + G K+  ++Y  +AQ T++E +  R  TK
Sbjct: 838 -ANRVIIFDASWNPSHDVQSIFRV-----YRFGQKKPCYIYRFLAQGTMEEKIYDRQVTK 891

Query: 188 STIQDLLLNA 197
            ++   +++ 
Sbjct: 892 LSLSCRVVDE 901


>gi|31322808|gb|AAP31846.1| Brg1p [Tetrahymena thermophila]
          Length = 1228

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 70/193 (36%), Gaps = 27/193 (13%)

Query: 26  ASKTVKCLQLANGAVYY-----DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFN 78
            +  ++  +  N    +      +          K + L+ ++ K       +++     
Sbjct: 702 MNLMMQLKKCCNHPYLFLNSDAYQIDDMIWKVSGKFELLDKMLAKLIRTGHRVLIFTQMT 761

Query: 79  SDLARLQKAF------------PQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
             +  +++ F                  D+    + ++N+   P  +      + G GLN
Sbjct: 762 HVMDLMEEYFKLREDYIKYLRLDGTTKADERGVKMAQFNQPNSPYNVFILSTRAGGLGLN 821

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   + ++ F   W+ +     +++    R  + G K  V VY L+    I+E +L + 
Sbjct: 822 LQT-ADTVIIFDSDWNPQ-----MDQQAQDRAHRIGSKSEVRVYRLVTNTWIEEEILSKA 875

Query: 185 RTKSTIQDLLLNA 197
             K  + ++++ A
Sbjct: 876 AYKMGLDEMIIQA 888


>gi|327268904|ref|XP_003219235.1| PREDICTED: transcription termination factor 2-like [Anolis
            carolinensis]
          Length = 1233

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 56/237 (23%), Gaps = 66/237 (27%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------------------------- 54
               +  S  ++  Q                +  E                          
Sbjct: 984  TTIHILSLLLRLRQCCCHLSLLKVALDQANLASEGISLTLEEQLNALTLSEPDSSDPQSV 1043

Query: 55   --------------------KIKALEVIIEKANAA--PIIVAYHFNSDLA---------- 82
                                K+  L   ++         ++   + S L           
Sbjct: 1044 VYLFGAAFSVELFEATRQSTKLSHLLNELKAIQGHSQKSVIVSQWTSMLKVVAVHLKKLG 1103

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    ++E+N       ++       G       GGN L    + W+
Sbjct: 1104 LKYATVDGSVNPKQRMDVVEEFNNNPKGPEVMLISLL-AGGVGLNLVGGNHLFLLDMHWN 1162

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q  +RI      + G +  V ++  + + T++E + +    K  +   +L+ 
Sbjct: 1163 PALEDQACDRI-----YRVGQRNDVTIHRFVCKRTVEEKISELQTKKKELAQKVLSG 1214


>gi|313227060|emb|CBY22207.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     +    I+++ +  +P +L     +   G+N+      +V F + W+    
Sbjct: 1   MRIDGSCGSMEREKIIKKFTDFPLPSILIISTRAGCVGINVTA-ATRVVMFDVSWNP--- 56

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + +   V R  + G ++A F+Y L+A   ++  + +R   K+++   +++    + + 
Sbjct: 57  --VHDAQAVCRIYRIGQEKACFIYRLVADGCMERAIYERQVAKTSLSRRIVDEKNIDRLR 114

Query: 205 V 205
           V
Sbjct: 115 V 115


>gi|313218173|emb|CBY41468.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     +    I+++ +  +P +L     +   G+N+      +V F + W+    
Sbjct: 1   MRIDGSCGSMEREKIIKKFTDFPLPSILIISTRAGCVGINVTA-ATRVVMFDVSWNP--- 56

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             + +   V R  + G ++A F+Y L+A   ++  + +R   K+++   +++    + + 
Sbjct: 57  --VHDAQAVCRIYRIGQEKACFIYRLVADGCMERAIYERQVAKTSLSRRIVDEKNIDRLR 114

Query: 205 V 205
           V
Sbjct: 115 V 115


>gi|261198487|ref|XP_002625645.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239594797|gb|EEQ77378.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 929

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 746 NEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARID 805

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 806 GRMSSAKRDAAMKALSNDPNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 859

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 860 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTLM 902


>gi|242791161|ref|XP_002481703.1| chromatin remodeling complex subunit (Chd3), putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218718291|gb|EED17711.1| chromatin remodeling complex subunit (Chd3), putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1597

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 60/199 (30%), Gaps = 35/199 (17%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII---------------EKANAAPIIV 73
             ++  +       Y   +  +E       +   ++                K     +++
Sbjct: 1017 LMQLRKCLCHPFVYS--RQIEERTSNPTLSHRNLVEASGKLRLLELLLPRLKERGHRVLL 1074

Query: 74   AYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGH 121
               F  +L                        +    I  +N              S G 
Sbjct: 1075 FSQFLDNLDIVEDFLDGLGLFYCRLDGSMGAHEKQKKIDAFNAPDSTYFAFLLSTRSGGV 1134

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    + ++     ++  +     +   ++R  + G ++ V V+ L+ + + +E ++
Sbjct: 1135 GINL-ATADTVIIMDPDFNPHQ-----DIQALSRAHRIGQQKKVLVFQLMTRESAEEKIM 1188

Query: 182  QRLRTKSTIQDLLLNALKK 200
            Q  + K  +  +L+  +  
Sbjct: 1189 QIGKKKMALDHVLIEKMDA 1207


>gi|299756460|ref|XP_001829349.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
 gi|298411686|gb|EAU92309.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
          Length = 1155

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 69   APIIVAYHFNSDLA---------RLQKAFPQGRTL-DKDPCTIQEWNEG--KIPLLFAHP 116
               +V   F S L          R +     G     K    I ++     K  +L    
Sbjct: 998  FRAVVFSQFTSFLDLIQVVLTRERFEHYRFDGTMDVKKRGAAISDFKAPSRKPKILVVSL 1057

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNL    N +     WW+     Q I+R+      + G ++ V+V + +  NTI
Sbjct: 1058 KAGGVGLNLTA-ANHVFMMDCWWNAATENQAIDRV-----HRIGQEKTVYVKHFVISNTI 1111

Query: 177  DELVLQRLRTKSTIQDLLL 195
            +  +LQ  + K+ I +   
Sbjct: 1112 EGRILQIQKRKTAIVNEAF 1130


>gi|327351006|gb|EGE79863.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 931

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 748 NEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARID 807

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 808 GRMSSAKRDAAMKALSNDPNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 861

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 862 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTLM 904


>gi|312217906|emb|CBX97853.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1064

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 69/210 (32%), Gaps = 34/210 (16%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--- 65
            ++    L+ +     + A+K     +L               +   KI+    ++ +   
Sbjct: 859  KKTLAQLKKD--SLRSKAAKKKYLRRL-----------EKTYIPSAKIEKTMALLAEIAE 905

Query: 66   -ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLF 113
               +   ++   F S L              + +     +D+    +  + ++    ++ 
Sbjct: 906  NDPSEKTLIFSQFTSLLDLVEVPLSQRKIRYQRYDGSMKMDERADAVNAFMDDPDENVML 965

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   GLNL    + ++    +W+       IE   V R  +    R V V+ ++  
Sbjct: 966  VSLKAGNAGLNLWK-ASQVIVLDPFWNP-----FIEDQAVDRAHRMPQPREVHVHRVLVP 1019

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             T+++ +      K  I    L+    +++
Sbjct: 1020 ETVEDRICVLQDKKREIIGAALDEQASKSL 1049



 Score = 37.8 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 4/53 (7%), Positives = 13/53 (24%), Gaps = 6/53 (11%)

Query: 2   KQYHKFQRELYCD----LQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHW 48
           + Y   + +        ++   + A   N     ++  Q         +    
Sbjct: 602 ELYKALETKSQLQMNRFIERNAVTANYANVLCLLLRLRQACCHPHLIKDLSQP 654


>gi|170754301|ref|YP_001781764.1| phage helicase [Clostridium botulinum B1 str. Okra]
 gi|169119513|gb|ACA43349.1| phage helicase [Clostridium botulinum B1 str. Okra]
          Length = 365

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 83/203 (40%), Gaps = 23/203 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINDTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E      +I+ Y+F  ++ ++++           ++     ++ +      ++     
Sbjct: 230 LLESTED-RVIIFYNFTEEMEQIKEVCGRLEKPISIVNGQTKDLENYKTKDNTVVLVQYQ 288

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N ++++SL    E  +         R  + G  R    +YLI +  I+
Sbjct: 289 AGAMGLNLQ-LSNKIIYYSLPLASELFE-----QSKKRTHRIGQTRTCMYWYLITKGCIE 342

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           E + + L+ +    + L   L+ 
Sbjct: 343 EQIFETLKERRDYTNKLFEELEG 365


>gi|85690939|ref|XP_965869.1| helicase DNA-binding protein [Encephalitozoon cuniculi GB-M1]
 gi|19068436|emb|CAD24904.1| similarity to CHROMODOMAIN HELICASE DNA-BINDING PROTEIN 2
           [Encephalitozoon cuniculi GB-M1]
          Length = 1251

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 64/261 (24%), Gaps = 70/261 (26%)

Query: 2   KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     +    L +G    A N  +  ++  +           +        K K   
Sbjct: 546 RFYRAILEKNIEFLTKGGKESAPNLLNVMMELRKCCIHPYLIKGAEEQILSGYLKKKRER 605

Query: 61  --------------VIIEKANA-------------------------------------A 69
                          ++ +                                         
Sbjct: 606 SKAEGAENDITLTSEVLNEDEHQDGNSVISDIDEYYKIFIQSSGKLVLLDKLLGKLKDGH 665

Query: 70  PIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPA 117
            +++       L              +    G   +     I  +++    + +      
Sbjct: 666 KVLIFSQMTRCLDLLAEYLAYRKYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLSTR 725

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NL    + ++ F   W+ +      +     R  + G    V VY L+ +NT +
Sbjct: 726 AGGVGINLTA-ADTVIIFDSDWNPQN-----DLQAQARCHRIGQTSEVKVYRLVTENTYE 779

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
             +  +   K  +   +L  +
Sbjct: 780 REMFDKAGLKLGLDRAVLQKM 800


>gi|311262809|ref|XP_003129366.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Sus scrofa]
          Length = 1027

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 840  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 899

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 900  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 954

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 955  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|307197496|gb|EFN78730.1| Transcription termination factor 2 [Harpegnathos saltator]
          Length = 935

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              P  I  +N       +L     + G GLNL  G N L+ F + W+ +   Q  +RI 
Sbjct: 817 KDRPAIIDSFNKSNSDPRILLLSLTAGGVGLNL-VGANHLLLFDIHWNPQLESQAQDRI- 874

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                + G K+ V++Y  I  NTI+E +      K  I   +L+  + + I
Sbjct: 875 ----YRFGQKKDVYIYKFICSNTIEERIKGLQEQKLAIAQNVLSGDRSKEI 921


>gi|226292675|gb|EEH48095.1| chromodomain helicase DNA binding protein [Paracoccidioides
           brasiliensis Pb18]
          Length = 690

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
             K+  L  ++   K N    ++   F             +           +++     
Sbjct: 489 SGKVDKLCELLRRFKENGDRTLIFSQFTMVMDILEHVLQTVQMPFFRLDGSTSVEDRQAI 548

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  ++E  +IP+      + G G+NL    N ++ F   ++ +      +     R  + 
Sbjct: 549 LDAFHEQVEIPVFLLSTKAGGAGVNL-ACANKVIIFDSSFNPQ-----EDVQAENRAHRV 602

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 603 GQTREVEVVRLVTRGTIEEQMYALGQTKLALDQRV 637


>gi|213407960|ref|XP_002174751.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
 gi|212002798|gb|EEB08458.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
          Length = 930

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  +     +          G T      TIQ +  +  I +      +
Sbjct: 779 KSIVFSQFTSMLDLVHWRLRKAGFNCVKLEGGMTPKARDATIQAFCTDINITVFLVSLKA 838

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G +R + +  L  +N+I+ 
Sbjct: 839 GGIALNLTE-ASQVFMLDPWWNGAVQWQAMDRI-----HRIGQRRPIRITTLCIENSIES 892

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    ++  +K    +
Sbjct: 893 KIIELQEKKAQMIHATIDRDEKALNQL 919


>gi|225431683|ref|XP_002264260.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296088517|emb|CBI37508.3| unnamed protein product [Vitis vinifera]
          Length = 1043

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 63/212 (29%), Gaps = 27/212 (12%)

Query: 7   FQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEV 61
             +    D+        N        K    A       E   + E +     K+  +  
Sbjct: 638 LTKRAVEDVLEGMDSMLNQEDLGMASKL---AMHLATAYERDDFLEKNDNVSSKMSFILA 694

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK- 108
           +++        +++       L  +++                  +     + ++ +G  
Sbjct: 695 LLDTLIPEGHNVLIFSQTRKMLNLIEELLISNGYKFLRIDGTTKANDRVKIVNDFQDGVG 754

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+        G GL L    + ++     W+     Q ++R       + G  + V VY
Sbjct: 755 APIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQTKDVIVY 808

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            L+   TI+E + ++   K  +        ++
Sbjct: 809 RLMTCGTIEEKIYRKQIFKGGLFRTATEHKEQ 840


>gi|156097905|ref|XP_001614985.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803859|gb|EDL45258.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1102

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            ++           +    I+ +     + +      + G GLNL    N ++     W+ 
Sbjct: 974  QIYVRLDGSTNTIERQKIIKRFSKNDNVFIFLLSTKAGGVGLNL-IAANHVILMDQDWNP 1032

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                   +R    R  + G K  V++Y L  +NTI+E +L+  + K  +   
Sbjct: 1033 -----HNDRQAEDRVHRLGQKNEVYIYRLCCKNTIEETILRCCKAKLHLDQA 1079


>gi|331245961|ref|XP_003335615.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309314605|gb|EFP91196.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 894

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           L  + I  +   ++  +      G +   +    K +   K K   V+I    +  + + 
Sbjct: 319 LPKKEINVYVGMTEMQRK----CGKMIILD----KLLKAMKAKGSRVLIFSQMSRVLDIL 370

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNIL 132
             +                 +     I E+N+      +      + G G+NL    +I+
Sbjct: 371 EDYCFFRQYEYCRIDGQTAHEDRIGAIDEYNKEGSSKFVFLLTTRAGGLGINLTT-ADIV 429

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F   W+ +      +   + R  + G K+ V+V+  + +N ++E VL+R   K  +  
Sbjct: 430 VLFDSDWNPQA-----DLQAMDRAHRIGQKKQVYVFRFVTENAVEEKVLERAAQKLRLDQ 484

Query: 193 LLLNALK 199
           L++   +
Sbjct: 485 LVIQQGR 491


>gi|302845240|ref|XP_002954159.1| hypothetical protein VOLCADRAFT_30537 [Volvox carteri f.
           nagariensis]
 gi|300260658|gb|EFJ44876.1| hypothetical protein VOLCADRAFT_30537 [Volvox carteri f.
           nagariensis]
          Length = 462

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 56/202 (27%), Gaps = 49/202 (24%)

Query: 29  TVKCLQLANGAV---YYDEEKHWKEVHDEK----------IKALEVIIEK---------- 65
            ++   + N       + E       H  +          +     ++++          
Sbjct: 267 VMEMRNICNHPFISKLHPELGESFLPHTAQRHCGLPPLVTLCGKMELLDRLLVRLHNHHT 326

Query: 66  --------ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
                        +++       L  +++                   +    I ++N  
Sbjct: 327 TGGCGGCGGFRHKVLLFATMTRALDLVEEYLEWRGFEWARLDGSTAAAERGALIADFNRP 386

Query: 108 KIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +      + G GLNLQ   + ++ +   W+ +      +     R  + G  R V
Sbjct: 387 DSDTFIFLLSLKAGGVGLNLQA-ADTVILYDTDWNPQL-----DLQAQARAHRIGQTREV 440

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            V+ L+   TI++ +      K
Sbjct: 441 RVFRLLTAGTIEQHIAAVAEEK 462


>gi|258572294|ref|XP_002544909.1| hypothetical protein UREG_04426 [Uncinocarpus reesii 1704]
 gi|237905179|gb|EEP79580.1| hypothetical protein UREG_04426 [Uncinocarpus reesii 1704]
          Length = 703

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 26/193 (13%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEKIKAL 59
            +R     L  + I +    +  ++     N    +                   K+  L
Sbjct: 507 IERVKTMKLAKKEIASKKLQNPIMQARLACNSPHNFYWPWDEDSNIDESIVTSSGKMLLL 566

Query: 60  EVIIEK--ANAAPIIVAYHFN------SDLARLQKAFPQ----GRTLDKDPCTIQEWN-E 106
           + ++    +    I++   F        D A L+           +       I  +N +
Sbjct: 567 DRLVPCLLSKGHKILLFSQFKTQLDILQDWAYLRDWNCCRIDGAVSQVDRQAQIYAFNTD 626

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      + G G+NL    + ++ +   W+ ++     +     R  + G  + V 
Sbjct: 627 SNYKIFLLSTRAGGQGINLTA-ADTVILYDSDWNPQQ-----DLQAQDRAHRIGQTKPVL 680

Query: 167 VYYLIAQNTIDEL 179
           VY L  + T+++ 
Sbjct: 681 VYRLATRGTVEQR 693


>gi|213404686|ref|XP_002173115.1| ISWI chromatin-remodeling complex ATPase ISW2 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001162|gb|EEB06822.1| ISWI chromatin-remodeling complex ATPase ISW2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 913

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 20/203 (9%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIE 64
            + ++Y D   + I          +  QL      +     +    +   K+  L+ ++ 
Sbjct: 695 MREDVYADANEQYIFEDMQVMSDFELHQLCVRFPSIKRFALEGTPWMQTAKVLRLQKLLN 754

Query: 65  KAN-AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLL 112
           +      I+V   F   L  L+                  ++     I  +  + K  L 
Sbjct: 755 EFKKDDRILVFSQFTQVLDILEFALKSMDVKYLRMDGSTPVETRQGLIDMFSTKPKYKLF 814

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    N+++ +   ++  +     +     R  + G  R V +Y L+ 
Sbjct: 815 LLSTKAGGFGINLTA-ANVVIMYDCSFNPFD-----DLQAEDRAHRVGQTRPVSIYRLVT 868

Query: 173 QNTIDELVLQRLRTKSTIQDLLL 195
           +NTIDE + +    K  ++  ++
Sbjct: 869 ENTIDENIQKLAFAKLALESSMV 891


>gi|39971679|ref|XP_367230.1| hypothetical protein MGG_07155 [Magnaporthe oryzae 70-15]
 gi|145019630|gb|EDK03858.1| hypothetical protein MGG_07155 [Magnaporthe oryzae 70-15]
          Length = 1096

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKI 109
             ++        +V   + S L  ++ A  +                      +   +  +
Sbjct: 928  ELMPDEPPIKSVVFSGWTSHLDLIEIALDKAGITHTRLDGKMSRLARTQAMDRFREDPSV 987

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++     + G GLNL   GN +      ++     Q ++R+      + G KR V +  
Sbjct: 988  HVILVSIMAGGLGLNLTA-GNHVYVMEPQYNPAAEAQAVDRV-----HRLGQKRPVRIIR 1041

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN 196
             I +N+ +E ++   + K  + +L ++
Sbjct: 1042 YIMENSFEEQMVALQQKKIKLANLSMD 1068


>gi|82914730|ref|XP_728823.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485366|gb|EAA20388.1| Arabidopsis thaliana BRAHMA ortholog-related [Plasmodium yoelii
            yoelii]
          Length = 1529

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 3    QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIKA 58
             Y + + + +  +     +      +  ++  ++ N    +    +   +      K + 
Sbjct: 896  LYKQIENKNFKQINSDGTLNNKTFQNTIMQLRKIVNHPFLFTHDYDINDFVIKSSGKFEV 955

Query: 59   LEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
            L+ ++ K       I++                             +L      I  +N+
Sbjct: 956  LDRMLPKLIKFKHKILLFCQMTKVMDIISDYFELRKYKYHRLDGSVSLSDRRDIIDSFNQ 1015

Query: 107  --------------------------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                                          +      S   GLNLQ   + ++ F   ++
Sbjct: 1016 NKFVKNSDNSSQNKNDSLLLDPASKLDDTMIFILSTRSGSLGLNLQA-ADTVIIFDSDFN 1074

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +     +   + R  + G K  V V+  I  ++++EL+ Q+ + K  I D ++ A
Sbjct: 1075 PHQ-----DIQAMCRCHRIGQKNVVKVFRFITLSSVEELIFQKAKDKLNINDKVIQA 1126


>gi|325119107|emb|CBZ54659.1| putative SNF2 family N-terminal domain containing protein [Neospora
            caninum Liverpool]
          Length = 2550

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+++N       +      + G G+NL    N +V 
Sbjct: 1254 YCHYRGWKYLRLDGSTNKFVRELDIRDFNSENSTYFVYLISTRAGGLGINLTA-ANHVVL 1312

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G +RAV V+ L+ + T++E +  R   K  +  LL
Sbjct: 1313 YDHDWNP-----FIDLQAIDRAHRIGQQRAVHVWSLVNEWTVEERMAFRREQKLRLDKLL 1367

Query: 195  LN 196
            + 
Sbjct: 1368 VQ 1369


>gi|219122179|ref|XP_002181429.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407415|gb|EEC47352.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 902

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 66/250 (26%), Gaps = 61/250 (24%)

Query: 3   QYHKFQ--RELY--CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------- 50
            Y  F   +E      L GE      + +   K        +  +E              
Sbjct: 432 MYSDFVDSKESVVSSILSGETRSPLEAVTWLKKL---CGHPILAEELAINVGRLLATASP 488

Query: 51  ----VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
                   K+  L  +I   + N    ++       L  ++K                  
Sbjct: 489 DDLVQQSAKLCILLSLIENFRQNGHRTLIFSQSTKMLDIIEKTLLSEGVELLRIDGSSKE 548

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWD------------ 140
                 + ++N        +     + G GL L  G + ++ +   W             
Sbjct: 549 QDRQRFVDDFNSNTSTTDAMLLSTKAAGVGLTL-VGADRVIIYDPSWYVSEARFALQEQR 607

Query: 141 ---------------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                          L       +   V R  + G  R V VY LIA  T++E + ++  
Sbjct: 608 HLECAIAVTLLLFSLLSNRTPAEDSQAVDRCYRIGQTRDVVVYRLIAAGTVEEKMYEKQV 667

Query: 186 TKSTIQDLLL 195
            K  I+  + 
Sbjct: 668 HKDGIRRTVF 677


>gi|297293034|ref|XP_002804185.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like isoform 1 [Macaca mulatta]
 gi|297293036|ref|XP_002804186.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like isoform 2 [Macaca mulatta]
          Length = 1028

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 955

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 956  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|226287268|gb|EEH42781.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb18]
          Length = 1025

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
             N   ++V  H    L  LQ  F              T D     +  +N + +  +  
Sbjct: 625 HRNGDKVLVFSHNVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFL 684

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ LI+ 
Sbjct: 685 ISTRAGGIGLNITS-ANKVVVVDPNWNPA-----FDLQAQDRAYRIGQSRDVEVFRLISA 738

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 739 GTIEEIVYARQIYKQQQAN 757


>gi|225453462|ref|XP_002274161.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 983

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 76/232 (32%), Gaps = 41/232 (17%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL              +  +  ++  +  +    +        EE      
Sbjct: 410 KVYMSILRKELPKLLAFSSGPSGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQ 469

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ +++K   +   +++       L  LQ                   ++   
Sbjct: 470 ASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFS 529

Query: 100 TIQEWNEGKI-------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            I+ ++   +              +      + G GLNL    + ++F+   W+ +    
Sbjct: 530 AIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ---- 584

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +++  + R  + G    V    L+   T++E++++R   K  +   ++  +
Sbjct: 585 -VDKQALQRAHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEV 635


>gi|212534796|ref|XP_002147554.1| chromatin remodeling complex subunit (Chd3), putative [Penicillium
            marneffei ATCC 18224]
 gi|210069953|gb|EEA24043.1| chromatin remodeling complex subunit (Chd3), putative [Penicillium
            marneffei ATCC 18224]
          Length = 1605

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 41/235 (17%)

Query: 2    KQYHKFQRE---LYCDLQGENIEAFNSASK-------TVKCLQLANGAVYYD-------- 43
            K Y     +   L   +   N +A N  ++        ++  +       Y         
Sbjct: 982  KLYKSILAKNSKLIKSIFQSNQDAQNKQNERHSLSNILMQLRKCLCHPFVYSRQIEERIS 1041

Query: 44   -----EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAF 88
                      +     ++  L +   K     +++   F  +L  +              
Sbjct: 1042 NPTLSHRNLVEASGKLQLLELLLPRLKERGHRVLLFSQFLDNLDIVEDFLDGLGLLYCRL 1101

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   +    I  +N              S G G+NL    + ++     ++  +   
Sbjct: 1102 DGSMGAHEKQKQIDAYNAPDSKYFAFLLSTRSGGVGINL-ATADTVIIMDPDFNPHQ--- 1157

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +   ++R  + G ++ V V+ L+ + + +E ++Q  + K  +  +L+  +  +
Sbjct: 1158 --DIQALSRAHRIGQQKKVLVFQLMTRESAEEKIMQIGKKKMALDHVLIEKMDAD 1210


>gi|195111562|ref|XP_002000347.1| GI10182 [Drosophila mojavensis]
 gi|193916941|gb|EDW15808.1| GI10182 [Drosophila mojavensis]
          Length = 1389

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 74   AYHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGH 121
             Y F  D+   +  +  G    +              +++N     +  L      + G 
Sbjct: 1025 GYEFEGDVGNFKGCWTPGEDYFRLDGSCSVEQRESMCKKFNNASNLRARLFLISTRAGGL 1084

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V 
Sbjct: 1085 GINLVA-ANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVY 1138

Query: 182  QRLRTKSTIQDLLLNA 197
            +R   K      +++ 
Sbjct: 1139 ERQVAKQATAKRVIDE 1154


>gi|239610082|gb|EEQ87069.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 931

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 748 NEIDIDPETTSSKIEALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLARNGITFARID 807

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 808 GRMSSAKRDAAMKALSNDPNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 861

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 862 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLHKQKEKRTLM 904


>gi|190358532|ref|NP_001121901.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform a
            [Homo sapiens]
 gi|190358536|ref|NP_001121902.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform a
            [Homo sapiens]
 gi|119626456|gb|EAX06051.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1, isoform
            CRA_c [Homo sapiens]
 gi|168278811|dbj|BAG11285.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 [synthetic
            construct]
          Length = 1028

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 955

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 956  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|114595202|ref|XP_517348.2| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform 3 [Pan troglodytes]
 gi|114595204|ref|XP_001163670.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform 2 [Pan troglodytes]
 gi|10944338|gb|AAG16639.1| helicase SMARCAD1 [Homo sapiens]
          Length = 1026

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 839  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 899  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 953

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 954  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1001


>gi|302913263|ref|XP_003050881.1| SNF2 superfamily RAD26-like protein [Nectria haematococca mpVI
           77-13-4]
 gi|256731819|gb|EEU45168.1| SNF2 superfamily RAD26-like protein [Nectria haematococca mpVI
           77-13-4]
          Length = 1020

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP-LL 112
             +N   ++V  H    L  LQ                 + ++    +  +N      + 
Sbjct: 561 WHSNGDKVLVFSHSVRLLRILQHLFTNTSYTVSYLDGSLSYEQRQEVVDTFNSDPTQFVF 620

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    N +V     W+        +     R  + G  R V V+ LI+
Sbjct: 621 LISTKAGGVGLNITS-ANKVVIIDPHWNPS-----YDLQAQDRAYRIGQTRDVEVFRLIS 674

Query: 173 QNTIDELVLQRLRTKSTIQD 192
             T++E+V  R   K    +
Sbjct: 675 LGTVEEIVYARQIYKQQQAN 694


>gi|190358534|ref|NP_064544.2| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 isoform b
            [Homo sapiens]
 gi|306526240|sp|Q9H4L7|SMRCD_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1; AltName: Full=ATP-dependent helicase 1; Short=hHEL1
 gi|119626455|gb|EAX06050.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1, isoform
            CRA_b [Homo sapiens]
          Length = 1026

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 839  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 899  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 953

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 954  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1001


>gi|118496046|dbj|BAF37539.1| DNA repair and recombination protein RAD5B [Neurospora crassa]
          Length = 950

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA------- 87
            +   DEE+   E    K +A+  +++       + II+   + S L  +Q         
Sbjct: 762 HSATQDEEELESETKSSKTEAVLALVKGTLDKEGSKIIIFSQWTSFLTIIQHQLDEAGYT 821

Query: 88  ---FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      +    I+  + +    +L A    C  GLNL    + ++    WW    
Sbjct: 822 YTRIDGSMNAAQRDAAIRALDYDPNTRILLASLGVCSVGLNLVS-ADTVILADSWWAPA- 879

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               IE   V R  + G  R   V+ L+  N+I+E VL   + K  +       
Sbjct: 880 ----IEDQAVDRVHRLGQTRPTTVWRLVMDNSIEERVLDIQKEKRELVGKAFQE 929


>gi|291437491|ref|ZP_06576881.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340386|gb|EFE67342.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 732

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPC 99
              K+  L  I+++   N    +V  HF   L           R+           +   
Sbjct: 539 KSAKLGRLREIVQEAGENGRKTVVFSHFRDVLGVVEEALAADTRVFGPLTGSVPAGRRQR 598

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++       +L A   + G GLNLQ   +++V               E   V R  +
Sbjct: 599 LVDDFAGAPGPAVLLAQIQAAGVGLNLQA-ASVVVLCEPQIKPTL-----EHQAVARAHR 652

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 653 MGQVRPVRVHRLLATGGVDERLVRMLEDKTRLFDA 687


>gi|297734575|emb|CBI16626.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 76/232 (32%), Gaps = 41/232 (17%)

Query: 2   KQYHK-FQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL              +  +  ++  +  +    +        EE      
Sbjct: 302 KVYMSILRKELPKLLAFSSGPSGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQ 361

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPC 99
              K+  L+ +++K   +   +++       L  LQ                   ++   
Sbjct: 362 ASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFS 421

Query: 100 TIQEWNEGKI-------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            I+ ++   +              +      + G GLNL    + ++F+   W+ +    
Sbjct: 422 AIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNLVA-ADTVIFYEQDWNPQ---- 476

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +++  + R  + G    V    L+   T++E++++R   K  +   ++  +
Sbjct: 477 -VDKQALQRAHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEV 527


>gi|239929154|ref|ZP_04686107.1| bifunctional protein [Streptomyces ghanaensis ATCC 14672]
          Length = 722

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPC 99
              K+  L  I+++   N    +V  HF   L           R+           +   
Sbjct: 529 KSAKLGRLREIVQEAGENGRKTVVFSHFRDVLGVVEEALAADTRVFGPLTGSVPAGRRQR 588

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++       +L A   + G GLNLQ   +++V               E   V R  +
Sbjct: 589 LVDDFAGAPGPAVLLAQIQAAGVGLNLQA-ASVVVLCEPQIKPTL-----EHQAVARAHR 642

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 643 MGQVRPVRVHRLLATGGVDERLVRMLEDKTRLFDA 677


>gi|194208967|ref|XP_001497269.2| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 2 [Equus caballus]
          Length = 1029

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 842  HINNFQLDMDLILDSGKFRVLGRILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 901

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 902  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 957  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1004


>gi|156101125|ref|XP_001616256.1| SNF2 family N-terminal domain containing protein [Plasmodium vivax
            SaI-1]
 gi|148805130|gb|EDL46529.1| SNF2 family N-terminal domain containing protein [Plasmodium vivax]
          Length = 2946

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+E+N  +    +      + G G+NL    N ++ 
Sbjct: 1236 YCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTA-ANHVIM 1294

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G KR V V+ L+ + T++E +  R   K  +  L+
Sbjct: 1295 YDEDWNP-----FIDLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQKLKLDKLV 1349

Query: 195  LNALKKETI 203
            +     E +
Sbjct: 1350 VQTQDDEDM 1358


>gi|317037064|ref|XP_001398334.2| hypothetical protein ANI_1_444154 [Aspergillus niger CBS 513.88]
          Length = 858

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        +       +++N+G    +      + G GLN+ +G N ++ F   +
Sbjct: 493 FGWKYCRLDGSTPMASRQAATKQFNQGSAEDVYLISTRAGGLGLNI-FGANRVIIFDFTF 551

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +      + E   V R  + G K+ VFVY  IA  T +E++  +   K+ +   +++  K
Sbjct: 552 NP-----VWEEQAVGRAYRLGQKKPVFVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD--K 604

Query: 200 KETIHV 205
           K  I +
Sbjct: 605 KNPIRL 610


>gi|134083903|emb|CAK48807.1| unnamed protein product [Aspergillus niger]
          Length = 1758

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         +       +++N+G    +      + G GLN+ +G N ++ F   +
Sbjct: 1393 FGWKYCRLDGSTPMASRQAATKQFNQGSAEDVYLISTRAGGLGLNI-FGANRVIIFDFTF 1451

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +      + E   V R  + G K+ VFVY  IA  T +E++  +   K+ +   +++  K
Sbjct: 1452 NP-----VWEEQAVGRAYRLGQKKPVFVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD--K 1504

Query: 200  KETIHV 205
            K  I +
Sbjct: 1505 KNPIRL 1510


>gi|301606634|ref|XP_002932929.1| PREDICTED: chromodomain-helicase-DNA-binding protein 6-like
           [Xenopus (Silurana) tropicalis]
          Length = 2522

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 49/152 (32%), Gaps = 10/152 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-- 110
              ++    +  +         + F      + +        +     I  + +      
Sbjct: 647 STFLEEFGDLKTEEQVRKFYWLFDF--LWIYIYERIDGRVRGNLRQAAIDRFCKPDSDRF 704

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    +  + F   W+ +      +     R  + G  +AV VY L
Sbjct: 705 VFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-----DLQAQARCHRIGQSKAVKVYRL 758

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 759 ITRNSYEREMFDKASLKLGLDKAVLQDINRKG 790


>gi|326479941|gb|EGE03951.1| hypothetical protein TEQG_02985 [Trichophyton equinum CBS 127.97]
          Length = 561

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
             KI+AL  I+    +A     +V   + S L  ++                     +D 
Sbjct: 388 SSKIQALIKILTAKGQAAGTKTVVFSQWTSFLDLIEPHLVIHNINFARIDGKMNSAKRDA 447

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   + +  ++ A    C  GLNL    N +V    WW        IE   V R  +
Sbjct: 448 AMGKFSRDSECTVMLASLNVCSVGLNLVA-ANQVVLADSWWAPA-----IEDQAVDRVYR 501

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G  R   ++ L+ +N+I++ VL   + K  +       
Sbjct: 502 LGQTRPTTIWRLVMENSIEDRVLDIQKEKRELMSTAFQE 540


>gi|330918828|ref|XP_003298357.1| hypothetical protein PTT_09071 [Pyrenophora teres f. teres 0-1]
 gi|330929981|ref|XP_003302841.1| hypothetical protein PTT_14820 [Pyrenophora teres f. teres 0-1]
 gi|330929988|ref|XP_003302844.1| hypothetical protein PTT_14823 [Pyrenophora teres f. teres 0-1]
 gi|311321519|gb|EFQ89060.1| hypothetical protein PTT_14823 [Pyrenophora teres f. teres 0-1]
 gi|311321523|gb|EFQ89063.1| hypothetical protein PTT_14820 [Pyrenophora teres f. teres 0-1]
 gi|311328454|gb|EFQ93547.1| hypothetical protein PTT_09071 [Pyrenophora teres f. teres 0-1]
          Length = 1129

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLF 113
            +   A  +V   F S L  ++ A  +                      +  +  +  +L 
Sbjct: 974  EEPNAKTVVFSQFTSFLDLIEPALTRDHIPFLRFDGSISQKVRAQILTEFTSSPRPYVLL 1033

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    N +     WW        +E   + R  + G +R V V     Q
Sbjct: 1034 LSLRAGGVGLNLT-CANKVFMMDPWWSFA-----VEAQAIDRVHRMGQEREVKVVRFCVQ 1087

Query: 174  NTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
             +I+E +L+    K  I     +++  +K    +
Sbjct: 1088 GSIEEKMLRIQERKKFIASSLGIMSDEEKRVQRI 1121


>gi|289769357|ref|ZP_06528735.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289699556|gb|EFD66985.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 767

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 23/175 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           A   +      +    +  K++ L  I+++   N    +V  +F   LA +++       
Sbjct: 529 AGNFMAMRRAAYMSSGNSAKLERLREIVQEAGENGQKTVVFSNFKDVLAVVKEALAVETT 588

Query: 87  -------AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      G    +    + ++   + P +L     + G GLN+Q   +++V     
Sbjct: 589 RVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQIQAAGVGLNMQA-ASVVVICEPQ 647

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                    IE   V R  + G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 648 IKPT-----IEHQAVARAHRMGQVRPVRVHRLLATGGVDERMVKMLEAKTRLFDA 697


>gi|256785459|ref|ZP_05523890.1| bifunctional protein [Streptomyces lividans TK24]
          Length = 722

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 23/175 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           A   +      +    +  K++ L  I+++   N    +V  +F   LA +++       
Sbjct: 484 AGNFMAMRRAAYMSSGNSAKLERLREIVQEAGENGQKTVVFSNFKDVLAVVKEALAVETT 543

Query: 87  -------AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      G    +    + ++   + P +L     + G GLN+Q   +++V     
Sbjct: 544 RVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQIQAAGVGLNMQA-ASVVVICEPQ 602

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                    IE   V R  + G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 603 IKPT-----IEHQAVARAHRMGQVRPVRVHRLLATGGVDERMVKMLEAKTRLFDA 652


>gi|21223436|ref|NP_629215.1| bifunctional protein [Streptomyces coelicolor A3(2)]
 gi|13810424|emb|CAC37452.1| putative bifunctional protein [Streptomyces coelicolor A3(2)]
          Length = 800

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 23/175 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------- 86
           A   +      +    +  K++ L  I+++   N    +V  +F   LA +++       
Sbjct: 562 AGNFMAMRRAAYMSSGNSAKLERLREIVQEAGENGQKTVVFSNFKDVLAVVKEALAVETT 621

Query: 87  -------AFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      G    +    + ++   + P +L     + G GLN+Q   +++V     
Sbjct: 622 RVTPVFGPLTGGVPAQRRQEIVDDFAGVQGPAVLLGQIQAAGVGLNMQA-ASVVVICEPQ 680

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                    IE   V R  + G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 681 IKPT-----IEHQAVARAHRMGQVRPVRVHRLLATGGVDERMVKMLEAKTRLFDA 730


>gi|260814660|ref|XP_002602032.1| hypothetical protein BRAFLDRAFT_82621 [Branchiostoma floridae]
 gi|229287337|gb|EEN58044.1| hypothetical protein BRAFLDRAFT_82621 [Branchiostoma floridae]
          Length = 2045

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 68/243 (27%), Gaps = 71/243 (29%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------H 52
            K Y    +       G      +  +  ++  +  N +      +               
Sbjct: 866  KNYKALTK-------GMKGNTSSFLNIMMELKKCCNHSFLVRPPEDPPPGQSLVTQLLRS 918

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
              K+  L+ ++ +       +++       L  L +                 + +    
Sbjct: 919  SGKLFLLDKLLVRLRDTGHRVLIFSQMVRMLDILAEYLTMRHFP---------FQDFC-- 967

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR------- 163
                   + G G+NL    + ++ F   W+ +      +    +R  + G ++       
Sbjct: 968  -FLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DIQAQSRAHRIGQRKQVCTSTP 1020

Query: 164  ----------------------------AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                                         V +Y L+ + +++E +++R + K  +  L++
Sbjct: 1021 FNKEELSAILKFGAEELFKENEGEEEEMPVNIYRLVTKGSVEEDIIERAKKKMVLDHLVI 1080

Query: 196  NAL 198
              +
Sbjct: 1081 QRM 1083


>gi|195445442|ref|XP_002070326.1| GK12000 [Drosophila willistoni]
 gi|194166411|gb|EDW81312.1| GK12000 [Drosophila willistoni]
          Length = 1352

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 74   AYHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGH 121
             Y F  D+   +  +  G    +              +++N     K  L      + G 
Sbjct: 976  GYDFEGDVGNFKGCWTPGEDYFRLDGSCSVEQREAMCKKFNNAANLKARLFLISTRAGGL 1035

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V 
Sbjct: 1036 GINLVA-ANRVVIFDVSWNPSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVY 1089

Query: 182  QRLRTKSTIQDLLLNA 197
            +R   K      +++ 
Sbjct: 1090 ERQVAKLATAKRVIDE 1105


>gi|47222591|emb|CAG02956.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1174

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 97   DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  E+N     +  LL     +   G+NL    + +V F   W+        +   V
Sbjct: 989  RKKWADEFNNAANNRCKLLLISTKAGSLGINLVA-ASRVVIFDASWNPS-----YDVQSV 1042

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G  R VFVY  +AQ T++E +  R  TK ++ + +++
Sbjct: 1043 YRVYRFGQVRPVFVYRFLAQGTMEEKIYDRQVTKQSLSNRVVD 1085


>gi|115623606|ref|XP_786706.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115939608|ref|XP_001193343.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1093

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 43   DEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ----------KAF 88
            +++   +     K+ AL   +            IV   F S L  L+             
Sbjct: 901  NDDTDREWHSSAKVDALMECLLTERAADKTTKSIVVSQFTSFLDLLKKPLTEKGFKFCRL 960

Query: 89   PQGRTLDKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +       I+E+  N+   P +      + G GLNL    + L      W+    +
Sbjct: 961  DGSMSRIARTAAIREFSSNDPDSPQIFLLSLKAGGVGLNLTA-ASRLYLLDPAWNPACEE 1019

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            Q  +R       + G  + V +   + +++++E +L+   TK  +   +     +
Sbjct: 1020 QCFDRC-----HRLGQTKDVTITKFLVRDSVEEAMLELQETKRQLMKNVFGGKNQ 1069



 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 6/47 (12%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFN----SASKTVKCLQLANGAVYY 42
           K Y   +++    +    +     N      +  ++  QL       
Sbjct: 754 KVYKTMEKDGRLAVSKYFQQGSVLNHYGDILAILMRLRQLCCHPALC 800


>gi|47209275|emb|CAF89705.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2968

 Score = 77.9 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  ++       +      + G G+NL    +  + F   W+ +      +     
Sbjct: 1404 RQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-----DLQAQA 1457

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  +AV +Y LI +N+ +  +  +   K  +   +L ++   
Sbjct: 1458 RCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1504


>gi|322701620|gb|EFY93369.1| SNF2 family helicase/ATPase [Metarhizium acridum CQMa 102]
          Length = 1677

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 49   KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            + + D K    +V++   +   +        +  R       G  + K    I+++N  +
Sbjct: 1172 QILDDAKRSKDKVLVFSHSIPTLNYLSKLFQEQKRCFSRLDGGTPIAKRQDEIKKFNANQ 1231

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L      + G GLN+Q G N +V     W+    Q       + R  + G  + V VY
Sbjct: 1232 TELYLISTRAGGVGLNIQ-GANKVVILDSKWNPVHEQ-----QAIGRSYRIGQSKPVSVY 1285

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            Y +   T ++ +  R   K+ +   +++
Sbjct: 1286 YFVTAGTFEQDLHGRAIFKTQLATRVVD 1313


>gi|303287156|ref|XP_003062867.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455503|gb|EEH52806.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1542

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 58/246 (23%)

Query: 2   KQYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKH----------- 47
           K Y       +  L+    +A    N  +  ++  +        D  +            
Sbjct: 637 KCYRALFERNFSFLRQGCGDARALANFTNLMMEVRKCCQHPFLLDGVEEAFATQQAARLA 696

Query: 48  ---------WKEVHDEKIKALEVIIE--KANAAPIIVAYHFN------SDLARLQKAFPQ 90
                           K++ L+ ++   KA     ++            D  R +K   +
Sbjct: 697 KPRTTATAAQLVNCSGKLQLLDKLLPRLKAGGHRALIFSQMTRVLDVLEDYCRSRKHSYE 756

Query: 91  ----GRTLDKDPCTIQEWNEGKI-----------------PLLFAHPASCGHGLNLQYGG 129
               G T       I  + +G                    L      + G G+NL    
Sbjct: 757 RLDGGVTGRARQAAIDRFCDGGGGDGGGENAAGAGDDDGAFLFLLSTRAGGQGINLVA-A 815

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + ++ F   W+ +      +   + R  + G  + V VY L+ + T +  +L R   K  
Sbjct: 816 DTVIVFDSDWNPQN-----DAQALARAHRIGQTKPVQVYRLVMRATYEREMLDRAAMKLG 870

Query: 190 IQDLLL 195
           ++  + 
Sbjct: 871 LEQAIF 876


>gi|242208298|ref|XP_002470000.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730900|gb|EED84750.1| predicted protein [Postia placenta Mad-698-R]
          Length = 955

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 101 IQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL-EEHQQMIERIGVTRQR 157
           +Q +N     I +      + G GLNLQ    +++   +      +     +     R  
Sbjct: 676 VQMFNAPDSDIRVFILSTRAGGLGLNLQTADTVIMNNLIDDSFDSDWNPHADLQAQDRAH 735

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G  + V +   I + +++E + QR R K  I D ++ A +
Sbjct: 736 RIGQTKVVRILRFITEKSVEESMFQRARYKLDIDDKVIQAGR 777


>gi|295663903|ref|XP_002792504.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb01]
 gi|226279174|gb|EEH34740.1| DNA excision repair protein (Rad26L) [Paracoccidioides brasiliensis
           Pb01]
          Length = 1029

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
             N   ++V  H    L  LQ  F              T D     +  +N + +  +  
Sbjct: 629 HGNGDKVLVFSHSVRLLKMLQMLFKHTSYNVSYLDGSMTYDNRAKAVDNFNADPREFVFL 688

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ LI+ 
Sbjct: 689 ISTRAGGIGLNITS-ANKVVVVDPNWNPA-----FDLQAQDRAYRIGQSRDVEVFRLISA 742

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 743 GTIEEIVYARQIYKQQQAN 761


>gi|74001934|ref|XP_535658.2| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 1 [Canis familiaris]
 gi|74001936|ref|XP_861412.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
            actin-dependent regulator of chromatin, subfamily a,
            containing DEAD/H box 1 isoform 2 [Canis familiaris]
          Length = 1025

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 838  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 897

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 898  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 952

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 953  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1000


>gi|67523601|ref|XP_659860.1| hypothetical protein AN2256.2 [Aspergillus nidulans FGSC A4]
 gi|40744673|gb|EAA63829.1| hypothetical protein AN2256.2 [Aspergillus nidulans FGSC A4]
 gi|259487649|tpe|CBF86480.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_5G06590)
           [Aspergillus nidulans FGSC A4]
          Length = 972

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 52  HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKD 97
              KI+AL  I+       A   ++   + S L  ++                  ++ +D
Sbjct: 798 PSSKIEALIKILTAHGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQFARIDGKMTSIARD 857

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +   + K  +L A  + C  GLNL    N  +    WW        IE   V R  
Sbjct: 858 RSMRRFSTDPKCTVLLASLSVCSVGLNLVA-ANQAILADSWWAPA-----IEDQAVDRVY 911

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + G  R   V+ L+ +++I++ VL     K  + 
Sbjct: 912 RLGQTRETTVWRLVMEDSIEDRVLAIQEQKRKLM 945


>gi|321455028|gb|EFX66174.1| hypothetical protein DAPPUDRAFT_332470 [Daphnia pulex]
          Length = 358

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                L      + G G+NL    N ++ F   W+  +    I         + G  +  
Sbjct: 260 AHIPRLFLISTKAGGVGINLVA-ANRVILFDTSWNPSQDVPSI-----FCVYRLGQTKPC 313

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           FVY  IAQ TI+E +  R  TK ++   +++  K
Sbjct: 314 FVYRFIAQGTIEEKIYDRQVTKQSLSCRVIDEHK 347


>gi|254577539|ref|XP_002494756.1| ZYRO0A08932p [Zygosaccharomyces rouxii]
 gi|238937645|emb|CAR25823.1| ZYRO0A08932p [Zygosaccharomyces rouxii]
          Length = 1188

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 48/231 (20%)

Query: 1    MKQYHKFQRELYCDLQ----GENIEAFNSASKTVK---------CLQLANGAVYYDEEKH 47
            +K+Y +FQ++   +L+     E +      +  +K           ++A           
Sbjct: 962  LKEYLEFQKQKELELKCPNCREPVNKNYFFTLMLKDGESPQVVPLREVA----------- 1010

Query: 48   WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--------------KAFPQGRT 93
                 +  +K   ++ E +    I+V   F+S L  L+                F     
Sbjct: 1011 KSAKIEALLKHCSILQETSPGEQIVVFSQFSSFLDILETELANTFLGNGVKVYKFDGRLN 1070

Query: 94   LDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            L +    ++ ++        +L     + G GLNL    +       WW      Q I+R
Sbjct: 1071 LKERAAVLENFSTKDFDNQKVLLMSLKTGGVGLNLT-CASYAFMMDPWWSPSMEDQAIDR 1129

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            I      + G    V V   I +N+I+E +L+    K TI +  ++A + E
Sbjct: 1130 I-----HRIGQINQVKVTRFIVENSIEEKMLKIQERKRTIGEA-MDADEDE 1174


>gi|154302623|ref|XP_001551721.1| hypothetical protein BC1G_09888 [Botryotinia fuckeliana B05.10]
 gi|150855377|gb|EDN30569.1| hypothetical protein BC1G_09888 [Botryotinia fuckeliana B05.10]
          Length = 1025

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDK 96
           + +     K+    +         +++  H    L  LQ  F                + 
Sbjct: 609 NPEFCGKWKVLRKLLKHWHEEGDKVLIFSHSVKLLRMLQHLFQSTSYNVSFLSGEMKYED 668

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              T+ ++N +    +      + G GLN+    N +V F   W+        +     R
Sbjct: 669 RQDTVDDFNSDPNQFIFLISTKAGGVGLNITS-ANKVVIFDPNWNPS-----YDLQAQDR 722

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + G  R V  + L++  TI+E+V  R   K    ++  NA K+ 
Sbjct: 723 AYRIGQHRDVDSFRLVSAGTIEEVVYARQIYKQQQANIGYNASKER 768


>gi|325190696|emb|CCA25192.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 835

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             D               +    I+ +   + ++ +L     +   G+NL    N LV F
Sbjct: 649 VDDTNDWFLQIDGSTVGTRRSEYIERFTSSDNRVKVLLVSTRAGAEGINLHA-ANRLVLF 707

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W+        +   + R  + G  + V VY L++  T++ ++ ++ R K+++   L+
Sbjct: 708 DVSWNPS-----YDHQSMCRSHRLGQSKTVHVYRLVSTGTMERMIYEQQRKKTSLSMALV 762

Query: 196 NALK 199
           +  K
Sbjct: 763 DRSK 766


>gi|296809169|ref|XP_002844923.1| DNA repair protein RAD5 [Arthroderma otae CBS 113480]
 gi|238844406|gb|EEQ34068.1| DNA repair protein RAD5 [Arthroderma otae CBS 113480]
          Length = 919

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKA-----------F 88
           +E +   E    KI+AL  I+           +V   + S L  ++              
Sbjct: 736 NEVEVDSESTSSKIQALIKILMAKGQVLGTKTVVFSQWTSFLDLIEPQLSLNNINFARID 795

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D    +  ++ +  ++ A    C  GLNL    N ++    WW        I
Sbjct: 796 GKMNSAKRDAAMRKLTHDPECTVMLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 849

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           E   V R  + G  R   ++ L+ +++I++ VL   + K  +       
Sbjct: 850 EDQAVDRVYRLGQTRPTTIWRLVMEDSIEDRVLDIQKEKRELMTTAFQE 898


>gi|302309993|ref|XP_451940.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|199424832|emb|CAH02333.2| KLLA0B09240p [Kluyveromyces lactis]
          Length = 798

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  ++    +            T  +   TI+ +       +      +
Sbjct: 647 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKA 706

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 707 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQFRPVKITRFCIEDSIES 760

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+++    +N  +     +
Sbjct: 761 RIIELQEKKASMIHATINQDEAAINRL 787



 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 32/196 (16%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +R+    ++   +     N  +   +  Q+A+        K  K  +D     + 
Sbjct: 487 LYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLV--LKRLKGNNDNNPGVII 544

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
             +    A   I +   +         +      D+               L       G
Sbjct: 545 CQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKK-------------LTCPVCHIG 591

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             ++LQ          +  +L + Q ++ R+ +  + ++  K    V          E +
Sbjct: 592 LSIDLQQQA-----LEVDEELFKKQSIVSRLKMGGKWRSSTKIEALV----------EEL 636

Query: 181 LQRLRTKSTIQDLLLN 196
                 K TI+ ++ +
Sbjct: 637 YNLRSDKRTIKSIVFS 652


>gi|241959098|ref|XP_002422268.1| probable ATP-dependent helicase, putative [Candida dubliniensis CD36]
 gi|223645613|emb|CAX40272.1| probable ATP-dependent helicase, putative [Candida dubliniensis CD36]
          Length = 1096

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
               K +   K+  L  I+++        +++   F   L  L++                
Sbjct: 931  GDEKYLDSGKVIELGKILQQIINNKGEKVLIFSLFTQVLDILERVLSIFNYKFARLDGNT 990

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + +    I  +N +  I +      + G G+NL    N ++ F   ++        ++ 
Sbjct: 991  PVQERQDLIDLFNHDDNIHIFLISTKAGGVGINLVA-ANHVIMFDQSFNP-----HEDKQ 1044

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R  + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 1045 AEDRAHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 1087


>gi|118393979|ref|XP_001029383.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89283583|gb|EAR81720.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1811

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 37   NGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------ 86
                        K +     K+  +  +++K       +++    +  L   +       
Sbjct: 1274 CHIRRTLCFPSKKLLMYDCGKLNTMIQLLKKLKQRGDKVLIFTQMSRMLDIFENVLNLFN 1333

Query: 87   ----AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                       ++     ++ +N + +I    +   S G GLNL  G N++VF+   W+ 
Sbjct: 1334 FTYVRLDGSTKIENRQKVVERFNGDSRIFCFISSTRSGGIGLNLT-GANVVVFYDTDWNP 1392

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  ++R    R  + G  R V +Y LI++ TI+E +L +   K  + + ++  
Sbjct: 1393 A-----MDRQAQDRCHRIGQTRNVSIYRLISEYTIEENILLKSIQKRKLDEYIMEE 1443


>gi|68064412|ref|XP_674191.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56492586|emb|CAI00653.1| DNA helicase, putative [Plasmodium berghei]
          Length = 467

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 47/236 (19%)

Query: 3   QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYY---DEEKHWKEVHDEKIKA 58
            Y + + + +  +     +   +  +  ++  ++ N    +    +   +      K + 
Sbjct: 145 LYKQIENKSFKQVNSDGTLNTKSFQNTIMQLRKVVNHPFLFTYNYDINDFIIKSSGKFEV 204

Query: 59  LEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
           L+ +I K       I++                             +L      I  +NE
Sbjct: 205 LDRMIPKLLKFKHKILLFCQMTKLMDILSDYFELRGYKYHRLDGSVSLSNRREIIDNFNE 264

Query: 107 GKI-------------------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                                        +      S   GLNLQ   + ++ F   ++ 
Sbjct: 265 SMFVNNSEEIFKNKDSDLLTQESKLDEPMIFILSTRSGSLGLNLQA-ADTVIIFDSDFNP 323

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     +   + R  + G K  V V+  I  ++++ELV Q+ + K  I D ++ A
Sbjct: 324 HQ-----DIQAMCRCHRIGQKNIVKVFRFITISSVEELVFQKAKDKLNINDKVIQA 374


>gi|82595847|ref|XP_726017.1| nucleotide excision repair protein [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481248|gb|EAA17582.1| similar nucleotide excision repair proteins-related [Plasmodium
           yoelii yoelii]
          Length = 818

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
               ++   + S L  ++                   + ++       N+ ++ +L    
Sbjct: 665 DDKCLIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMVSRNNILYNFNNDKQLRVLLISL 724

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNLQ   N +     WW+            + R  + G  + V+    I +NT+
Sbjct: 725 KAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYAIRFIIENTV 778

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E ++Q    K  + D  + 
Sbjct: 779 EEKIIQLQNKKQLVFDCTIG 798


>gi|154309786|ref|XP_001554226.1| hypothetical protein BC1G_07363 [Botryotinia fuckeliana B05.10]
 gi|150851824|gb|EDN27017.1| hypothetical protein BC1G_07363 [Botryotinia fuckeliana B05.10]
          Length = 2080

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
               D  R          ++K    ++++N   + L      + G GLNL YG N +V F 
Sbjct: 1497 MCRDQGRKYARLDGKTAMNKRQALVKDFNSNDLELYLISTTAGGLGLNL-YGANRVVIFD 1555

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++      + E   + R  + G K+ VFVY L+A  T +  +  +   K+ +   +++
Sbjct: 1556 FKYNP-----INEEQAIGRAYRIGQKKHVFVYRLMAAGTFEGSIQNKAVFKTQLASRVVD 1610


>gi|320588259|gb|EFX00734.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1741

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 24/203 (11%)

Query: 6    KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            + +R+ +         A    +   K L +        +       H  K+  L  I+++
Sbjct: 1189 QRERDAHHPSSASPYSATLPLAVVQKLLSI------GQKRNIDDLHHSSKVMVLMGILDE 1242

Query: 66   --ANAAPIIVAYH------FNSDLARLQKAFP---QGRTLDK-DPCTIQEWNEGKIPLLF 113
                   +++         +  D+ + +K       G T+ +     ++ +N G+  +  
Sbjct: 1243 AREAGDKVLIFSQSKLVLDYLEDVFQRKKRRYSRLDGDTVVRWRQGMVKSFNAGRDEIYL 1302

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLN+  G N +V F   W+    Q       + R  + G  + VFVY+LI  
Sbjct: 1303 ISTTAGGVGLNIH-GANRVVIFDFKWNPMHEQ-----QAIGRAYRIGQTKPVFVYWLITG 1356

Query: 174  NTIDELVLQRLRTKSTIQDLLLN 196
             T + ++  +   K+ +   +++
Sbjct: 1357 GTFETVLHDQAVFKTQLASRVVD 1379


>gi|167518399|ref|XP_001743540.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778639|gb|EDQ92254.1| predicted protein [Monosiga brevicollis MX1]
          Length = 546

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 32  CLQLANG--AVYYDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKA 87
            ++L N    +              K+K LE ++ +  A    +++   F + L  L+  
Sbjct: 348 LMKLCNKSRPLQKFRLGDEVVDEAGKLKVLEHLLAQKQADEARVLIFSQFTTMLDILEDF 407

Query: 88  FPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             +             + +    I ++N + +I +      + G G+NL    N +V   
Sbjct: 408 LTRRGYVFIRLDGSTPVSERQDLIDQFNEDEEIFVFLLSTRAGGLGINLTA-ANTVVLHD 466

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + ++        ++    R  + G    V +  LIA  T++  +  +   K  ++   + 
Sbjct: 467 IDFNP-----YNDKQAEDRCHRVGQTDNVEIVRLIADETVEVDMQAKAEAKLQLERD-MT 520

Query: 197 ALKKETIHV 205
            LKK+  H+
Sbjct: 521 GLKKDDAHI 529


>gi|13543768|gb|AAH06035.1| Chd4 protein [Mus musculus]
          Length = 829

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G T +     I  +N              + G G+NL    + ++ +   W+        
Sbjct: 6   GITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HN 59

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +    +R  + G  + V +Y  + + +++E + Q  + K  +  L++
Sbjct: 60  DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 106


>gi|30387275|ref|NP_848354.1| global transactivator [Choristoneura fumiferana MNPV]
 gi|4097928|gb|AAD10317.1| global transactivator [Choristoneura fumiferana MNPV]
          Length = 497

 Score = 77.9 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 70/225 (31%), Gaps = 37/225 (16%)

Query: 3   QYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------ 50
            Y   + E             +     +      +  Q+            +KE      
Sbjct: 264 VYDSLKNESQRAYDDAVAGGDKLRSMQDVLWLLCRLRQMCCHPALTKCSAMFKEHARIFE 323

Query: 51  --VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLD 95
                 K + +  +++         +++   +   L                +     ++
Sbjct: 324 PAYESSKCRRVLELVQGVLDTMDDKVVLVSQWVEFLQLVAGLLRQRGVPVLLYTGTLRVE 383

Query: 96  KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +      ++N  + +  +L       G GLNL  GGN ++     W+ +     IE    
Sbjct: 384 ERTAVENQFNAADSRYRVLLMSIKCGGVGLNLT-GGNHIIMLEPHWNPQ-----IELQAQ 437

Query: 154 TRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G K+  FVY ++   +N+I+  +  R   K T  + + +
Sbjct: 438 DRIHRMGQKKRTFVYKMLVDEENSIERYMKARQDKKLTFVNKVFD 482


>gi|322824424|gb|EFZ29833.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 748

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           + +++ + ++     +I+  HF S           L           TL      I+ + 
Sbjct: 560 LDSIDTMKKEYPDDKMIIFSHFTSFMDVISVALDKLEISHLRLDGTMTLTNRNTVIRRFQ 619

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + ++ A   + G GLNL    N ++    WW+       IE   V R  + G K+ 
Sbjct: 620 ASDDVRVILASKTATGVGLNLTA-ANHVLVVDPWWNPA-----IEEQAVHRCYRIGQKKH 673

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V  +I ++TI++   +  + K    D +L A
Sbjct: 674 VHVTRIIIEDTIEQYCHEICQRKKEFGDAILRA 706



 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 2/42 (4%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVY 41
           KQY+    +             AF+  +   +  Q       
Sbjct: 423 KQYNSILARSRTALATSERKEGAFHIFAMMTRLRQACCHPWI 464


>gi|71653924|ref|XP_815591.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70880657|gb|EAN93740.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 748

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEWN 105
           + +++ + ++     +I+  HF S           L           TL      I+ + 
Sbjct: 560 LDSIDTMKKEYPDDKMIIFSHFTSFMDVISVALDKLEISHLRLDGTMTLTNRNTVIRRFQ 619

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + ++ A   + G GLNL    N ++    WW+       IE   V R  + G K+ 
Sbjct: 620 ASDDVRVILASKTATGVGLNLTA-ANHVLVVDPWWNPA-----IEEQAVHRCYRIGQKKH 673

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V  +I ++TI++   +  + K    D +L A
Sbjct: 674 VHVTRIIIEDTIEQYCHEICQRKKEFGDAILRA 706



 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 2/42 (4%)

Query: 2   KQYHKF--QRELYCDLQGENIEAFNSASKTVKCLQLANGAVY 41
           KQY+    +             AF+  +   +  Q       
Sbjct: 423 KQYNSILARSRTALATSERKEGAFHIFAMMTRLRQACCHPWI 464


>gi|170058721|ref|XP_001865045.1| transcriptional regulator ATRX [Culex quinquefasciatus]
 gi|167877721|gb|EDS41104.1| transcriptional regulator ATRX [Culex quinquefasciatus]
          Length = 1268

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 27/180 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVHD------EKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
             Q         E      +          ++     I      P    Y + S     +
Sbjct: 121 LKQ--CH-----ERGEKCLIFSAFVAVLNVVEHFMAKIHNQQNDPAADVYGYGSFRGPWE 173

Query: 86  KAFPQGRTLDK-----DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                 R   K         I  +N+    +         + G G+NL  G N ++    
Sbjct: 174 PGKDYYRLDGKTQKNIRHKMITSFNDPSNKRTKCFLISAKAGGQGINL-IGANRVIILDT 232

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+    QQ I RI      + G KR  +VY L+A  T++E V  R  TK  +   +++ 
Sbjct: 233 SWNPSNDQQNIFRI-----FRLGQKRKCYVYRLLAMGTMEEKVYSRSVTKQAMSFRVVDE 287


>gi|317126457|ref|YP_004100569.1| helicase [Intrasporangium calvum DSM 43043]
 gi|315590545|gb|ADU49842.1| helicase domain protein [Intrasporangium calvum DSM 43043]
          Length = 726

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 24/198 (12%)

Query: 7   FQRELYCDLQ--GENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALE 60
            +R    +L+         N  +   +  Q    LA            K V   K   + 
Sbjct: 521 LRRVAMAELKAPSGEGTGENVFTLVRRIGQAKASLAADYAAQLSHSVGKVVFFAKHIDVM 580

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
                        A    +D      +    +T  +    +  +  + ++ +      + 
Sbjct: 581 D-----------KAERILADAGLRTVSIRGDQTAKQRQEAVDAFQKDPEVSVAVCSLLAA 629

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N+++    W   E+         + R  + G    V  + ++A  T+D  
Sbjct: 630 GVGVNLHASSNVVLSELSWTAAEQQ------QAIDRVHRIGQDEPVTAWRILAAGTVDSR 683

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + + +  K  +    L+ 
Sbjct: 684 IAELIDAKQGLAARALDG 701


>gi|195504329|ref|XP_002099032.1| GE10693 [Drosophila yakuba]
 gi|194185133|gb|EDW98744.1| GE10693 [Drosophila yakuba]
          Length = 1312

 Score = 77.9 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 963  DYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1021

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1022 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1073


>gi|301758964|ref|XP_002915331.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1-like [Ailuropoda melanoleuca]
          Length = 1027

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 840  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 899

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 900  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 954

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 955  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1002


>gi|242077806|ref|XP_002448839.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
 gi|241940022|gb|EES13167.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
          Length = 1042

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 58/235 (24%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY------------YDEEKHWK 49
           K Y  F       L        +  +      ++ +  +              DE  + +
Sbjct: 605 KLYTAFLNSELVHL--ALQPKASPLAAITILKKICDHPLLLTKKGAEGVLEGMDEMLNDQ 662

Query: 50  EVH-------------------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
           ++                            K+  +  ++         +++       L 
Sbjct: 663 DIGMVEKMAMNLADMAHDDDALQVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLN 722

Query: 83  RLQK----------AFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNI 131
            +Q+                 + +    ++++ EG+  P+        G GL L      
Sbjct: 723 LIQEAIILEGYEFLRIDGTTKVSERERIVKDFQEGRGAPIFLLTTQVGGLGLTLTKAA-R 781

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           ++     W+     Q ++R       + G  + V VY L+   TI+E + +    
Sbjct: 782 VIVVDPAWNPSTDNQSVDR-----AYRIGQTKNVIVYRLMTSATIEEKIYKLQVQ 831


>gi|45935136|gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida]
 gi|117166029|dbj|BAF36331.1| hypothetical protein [Ipomoea trifida]
          Length = 1040

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEW- 104
            +      +   N +  IV   + + L  LQ A  +               +    I+ + 
Sbjct: 879  LLHELEQLRAVN-SKSIVFSQWTAFLDLLQIALARNDISFLRLDGTLNQQQREKVIKRFS 937

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             E  + +L     + G G+NL    +       WW+       +E   V R  + G  + 
Sbjct: 938  EEDSVLVLLMSLKAGGVGINLTA-ASNAFVLDPWWNPA-----VEEQAVMRVHRIGQTKR 991

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V +   I + T++E +      K  +    L   +  T  +
Sbjct: 992  VAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARI 1032



 Score = 37.8 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 27/156 (17%), Gaps = 25/156 (16%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    +                    +     ++  Q  +           +E  D    
Sbjct: 706 YEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVLSRGDTQEFSDLNKL 765

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           A   +             +   D             L K          G+ P+      
Sbjct: 766 AKRFLKGGQK-----TGENHVEDAPTRAYIQEVVEELRKGEQ-------GECPICL---- 809

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER 150
                  L    + L      + W         + R
Sbjct: 810 EACEDAVLTPCAHRLCRECLLASWRSPASGFCPVCR 845


>gi|302501310|ref|XP_003012647.1| hypothetical protein ARB_00897 [Arthroderma benhamiae CBS 112371]
 gi|291176207|gb|EFE32007.1| hypothetical protein ARB_00897 [Arthroderma benhamiae CBS 112371]
          Length = 828

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  +       +      
Sbjct: 674 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMKNVDTEVFLVSLK 733

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 734 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 787

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 788 SRMVLLQEKKANMINGTINKDQSEALE 814


>gi|221062029|ref|XP_002262584.1| DNA repair protein rhp16 [Plasmodium knowlesi strain H]
 gi|193811734|emb|CAQ42462.1| DNA repair protein rhp16, putative [Plasmodium knowlesi strain H]
          Length = 1527

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPL 111
            +        ++   + S L  ++    +             +      +  +N +  + +
Sbjct: 1369 VIHTTDDKCLIFSQYCSMLDLIEYHLKKHNIICSKLLGYMPMVSRNNILYNFNEDKHLRV 1428

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L     + G GLNLQ   N +     WW+            + R  + G  + V+    I
Sbjct: 1429 LLISLKAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYATRFI 1482

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNA 197
             +NT++E ++Q    K  + D  +  
Sbjct: 1483 IENTVEEKIVQLQNKKQLVFDCTIGD 1508


>gi|156052062|ref|XP_001591992.1| hypothetical protein SS1G_07439 [Sclerotinia sclerotiorum 1980]
 gi|154705216|gb|EDO04955.1| hypothetical protein SS1G_07439 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1863

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 53   DEKIKALEVIIEKAN--AAPIIVAYH------FNSDLA----RLQKAFPQGRTLDKDPCT 100
              K++ L  I++ +      ++V         F  D+     R          + K    
Sbjct: 1291 SNKVRILCQILDASKAVGDKVLVFSQTLVTLDFLEDMCKEQGRKYARLDGKTAMGKRQAI 1350

Query: 101  IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++++N   + L      + G GLNL YG N +V F   ++      + E   + R  + G
Sbjct: 1351 VKDFNSNNLELYLISTNAGGLGLNL-YGANRVVIFDFRYNP-----INEEQAIGRAYRIG 1404

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             K+ VFVY L+A  T +  +  +   K+ +   +++
Sbjct: 1405 QKKHVFVYRLMAAGTFENSIQNKAVFKTQLASRVVD 1440


>gi|327304687|ref|XP_003237035.1| DNA repair protein RAD16 [Trichophyton rubrum CBS 118892]
 gi|326460033|gb|EGD85486.1| DNA repair protein RAD16 [Trichophyton rubrum CBS 118892]
          Length = 935

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              IV   F S L  ++    +            +  +   +I  +       +      
Sbjct: 781 NKSIVFSQFTSMLQLVEWRLHRAGISTVMLDGSMSPVQRQRSIDYFMKNVDTEVFLVSLK 840

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  LNL    + +     WW+     Q  +R       + G +R   +  L  +++++
Sbjct: 841 AGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITRLCIEDSVE 894

Query: 178 ELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++     K+ + +  +N  + E + 
Sbjct: 895 SRMVLLQEKKANMINGTINKDQSEALE 921


>gi|307186121|gb|EFN71846.1| Transcription termination factor 2 [Camponotus floridanus]
          Length = 830

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPL 111
           +K +   +I+ +  A   ++A H +S        F     +      I  +N       +
Sbjct: 671 QKSEDKLIIVSQWTALLNVIASHLSSIKGATFSKFTGNVAIKDRQSIIDSFNSRNSDPRI 730

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL  G N L+ F + W+ +   Q  +RI      + G K+ V VY  I
Sbjct: 731 LLLSLTAGGVGLNL-VGANHLLLFDIHWNPQLETQAQDRI-----YRFGQKKNVHVYKFI 784

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALK 199
             NTI+E +      K  I   +L+  K
Sbjct: 785 CLNTIEERIKGLQDRKLEIASNVLSGDK 812


>gi|21392184|gb|AAM48446.1| RE70645p [Drosophila melanogaster]
 gi|54650558|gb|AAV36858.1| RE74565p [Drosophila melanogaster]
          Length = 835

 Score = 77.5 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 52  HDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKD 97
              KI  +  I++    K++    IV   + S L  L+                  +   
Sbjct: 662 PSSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNR 721

Query: 98  PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              + E+N+   +  +L     + G GLNL  G N L+   L W  +      E     R
Sbjct: 722 QDIVNEFNDRNNQKRVLLLSLTAGGVGLNL-IGANHLLLLDLHWSPQL-----EAQAQDR 775

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + G K+ V +Y  +  +T+++ +      K  + D +L   K
Sbjct: 776 IYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAK 819



 Score = 41.7 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++        + +++ +     ++  Q+         +   EE      H      
Sbjct: 541 YKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDT 600

Query: 59  LE-VIIEKANA 68
            E  ++ + N 
Sbjct: 601 PEIDLLAQLNK 611


>gi|242045780|ref|XP_002460761.1| hypothetical protein SORBIDRAFT_02g034440 [Sorghum bicolor]
 gi|241924138|gb|EER97282.1| hypothetical protein SORBIDRAFT_02g034440 [Sorghum bicolor]
          Length = 857

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 21/176 (11%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQKAFPQ-- 90
              +              KI AL      +IE   +A  IV   F S L  +Q +  +  
Sbjct: 669 CSGILSRLPSLVDFKTSTKIDALREEIRNMIEHDGSAKGIVFSQFTSFLDLIQFSLEKSG 728

Query: 91  ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        +K         +    +      + G  LNL    + +     WW+ 
Sbjct: 729 IKCVQLNGAMNITEKGRAIDTFTRDPDCRIFLMSLKAGGVALNLT-VASHVFLMDPWWNP 787

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +E     R  + G  + +     +  +T++E +LQ    K  + +  +  
Sbjct: 788 A-----VESQAQDRIHRIGQFKPIKSTRFVIGDTVEERILQLQEKKHLVFEGTVGD 838



 Score = 34.3 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 5/78 (6%), Positives = 17/78 (21%), Gaps = 6/78 (7%)

Query: 1   MKQYHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           M+ Y     +         +         +      +  Q  +        K  +     
Sbjct: 533 MEFYEALYTQSVTQFDAYVVAGTLMNNFAHIFDLLTRLRQAVDHPYLVAYSKTAEHPEGM 592

Query: 55  KIKALEVIIEKANAAPII 72
           K +  + +  +      +
Sbjct: 593 KNEGNDTMESQCGICHNL 610


>gi|221128249|ref|XP_002153956.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 541

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 21/177 (11%)

Query: 32  CLQLANGAVYYDEEKHWKE--VHDEKIKALEVIIEK--ANAAPIIVAYHFN--------- 78
             +L +      + K   +  +   KIK L+ ++ +       +++   F          
Sbjct: 365 LHKLCSTQSILKKYKLCDDDILDSGKIKQLDKLLPELKEKNDRVLLFSQFVIVLDILEEY 424

Query: 79  -SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                            ++    I ++N   +I +      + G G+NL    N +V   
Sbjct: 425 LKIRKIKYLRLDGSTKGNERQELIDKFNHNEEIFIFLLSTRAGGLGINLTT-ANTVVLHD 483

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + ++        ++    R  + G  R V VY  I ++T++E +L     K  ++  
Sbjct: 484 IDFNP-----YNDKQAEDRCHRLGQTRQVTVYKFIGKDTVEENILTCGERKLQLEKS 535


>gi|171688590|ref|XP_001909235.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944257|emb|CAP70367.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1092

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 17/152 (11%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLL 112
                    +V   + S L  ++ A                            ++  + ++
Sbjct: 929  PDEPPYKSVVFSGWTSHLDLIEIALDDAGITHSRLDGKMTRNARNQAMEAFRDDPNVQVI 988

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL   GN +      ++     Q ++R+      + G KR V     I 
Sbjct: 989  LVSIMAGGMGLNLTA-GNSVFVMEPQFNPAAEAQAVDRV-----HRLGQKRPVRTVRYIM 1042

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + +E ++     K  +  L ++  + E + 
Sbjct: 1043 SGSFEEKMIALQEKKKQLASLSMDRAEAEGVR 1074


>gi|294891643|ref|XP_002773666.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239878870|gb|EER05482.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 741

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 33/221 (14%)

Query: 2   KQYHKFQRELYCDLQGENI-------EAFNSASKT-VKCLQLANGAVYYDEEKHWKEVHD 53
           + Y + +       +G +        E  +      ++  ++ N    +  +        
Sbjct: 421 RMYTEIESRGLAHARGGSRKEDESPPEYISVGQNLQMQLRKVCNHPYLFCHDSDLPIDES 480

Query: 54  -----EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------K 96
                 K+ AL+ I+ K  A    +++       L  L+                     
Sbjct: 481 LIRICGKMMALDGILPKLRATGHRVLIFSQMTKLLNILELYLTFRNFRYLRLDGSTGADD 540

Query: 97  DPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I+ +N              + G G+NLQ   + ++ F   W+ +      +    +
Sbjct: 541 RERRIELFNSSNSNYFAFILSTRAGGLGINLQT-ADTVIIFDSDWNPQN-----DEQAQS 594

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G K  V  + LI  N+++E +LQ+   K     L++
Sbjct: 595 RAHRLGQKSEVRTFRLITLNSVEEGMLQKAGEKMDQDALVI 635


>gi|260949835|ref|XP_002619214.1| hypothetical protein CLUG_00373 [Clavispora lusitaniae ATCC 42720]
 gi|238846786|gb|EEQ36250.1| hypothetical protein CLUG_00373 [Clavispora lusitaniae ATCC 42720]
          Length = 1162

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 66/203 (32%), Gaps = 32/203 (15%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-------------VIIEKAN 67
                  ++ ++   +      Y E        D  +  L              +      
Sbjct: 869  SRMRLLNRVMQLRNVCGSHYVYYEPLADDNEDDAYLAHLIFRNSGKVQLLKQLLDPLLKG 928

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN---EGKIPLLFA 114
               +++   F   L  +     + +             +    I  +N   E    +   
Sbjct: 929  GHKVLIFSQFTKILELIGVCLDEDKIKYSLLTGNIFQDEREDEIALFNSEDEDSTKIFLL 988

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G G+NL    + ++ F   W+ +     ++   + R  + G  + V V+  + ++
Sbjct: 989  STRAGGLGINLTT-ADTVILFDSDWNPQ-----MDIQAMGRAHRIGQTKPVKVFRFVVRD 1042

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            +++E++L +  +K  ++  ++ +
Sbjct: 1043 SVEEILLFKSFSKRALEQKVIKS 1065


>gi|195395382|ref|XP_002056315.1| GJ10883 [Drosophila virilis]
 gi|194143024|gb|EDW59427.1| GJ10883 [Drosophila virilis]
          Length = 1315

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 74   AYHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGH 121
             Y F  D+   +  +  G    +              +++N     +  L      + G 
Sbjct: 952  GYEFEGDVGNFKGCWTPGEDYFRLDGSCSVEQRESMCKKFNNASNLRARLFLISTRAGGL 1011

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            G+NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V 
Sbjct: 1012 GINLVA-ANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVY 1065

Query: 182  QRLRTKSTIQDLLLNA 197
            +R   K      +++ 
Sbjct: 1066 ERQVAKQATAKRVIDE 1081


>gi|115462843|ref|NP_001055021.1| Os05g0247900 [Oryza sativa Japonica Group]
 gi|54291735|gb|AAV32104.1| uknown protein [Oryza sativa Japonica Group]
 gi|113578572|dbj|BAF16935.1| Os05g0247900 [Oryza sativa Japonica Group]
 gi|125551533|gb|EAY97242.1| hypothetical protein OsI_19162 [Oryza sativa Indica Group]
 gi|215701224|dbj|BAG92648.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 856

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 52  HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPC 99
           H  K++ALE ++         I++  +    L  L+K           F     ++    
Sbjct: 518 HCGKMRALERLLSLWTLQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQL 577

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I E+N      +      +   G+NL    N +V F   W+  +     +     R  +
Sbjct: 578 LIDEFNRCPSKQVFLISTRAGNLGVNLVS-ANRVVIFDPSWNPAQ-----DLQAQDRSFR 631

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +R V V+ L+   +++EL+  R   K  + ++ ++ 
Sbjct: 632 FGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSG 670


>gi|328771180|gb|EGF81220.1| hypothetical protein BATDEDRAFT_16302 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 704

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 17/139 (12%)

Query: 70  PIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  +Q               +     +D        +  I +      +
Sbjct: 553 KSIVFSQFVSFLDLVQWRLIRAGFNVVKLDGRMAPFQRDDVINSFMTDPSITVFLVSLKA 612

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +RI      + G  R + +  +I +N+I+ 
Sbjct: 613 GGVALNLTE-ASRVFVLDPWWNPAAEDQAFDRI-----HRLGQYRPIKITRIIVENSIES 666

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L     K  + D  +  
Sbjct: 667 RILMLQEKKKALFDSTVGG 685


>gi|150865976|ref|XP_001385416.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
 gi|149387232|gb|ABN67387.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
          Length = 701

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  ++    +                +D       +  ++
Sbjct: 541 KLRSDKHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQGSMSPQQRDNTIKYFMDNTEV 600

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 601 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 654

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+ +    +N
Sbjct: 655 FCIEDSIEMKIIELQEKKANMIHATIN 681


>gi|168042770|ref|XP_001773860.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162674847|gb|EDQ61350.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1566

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 94   LDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             D+    I+ +N+  GKI +L A   +CG G+ L  G + +VF  + W+         R 
Sbjct: 1359 PDERQSIIERFNDRKGKIRVLLASTKACGEGITLT-GASRVVFMDVLWNPAVI-----RQ 1412

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + R  + G + AV VY L+A  T++E   QR+ +K      + 
Sbjct: 1413 AIHRAFRIGQRNAVHVYRLVASGTMEESKYQRMVSKDWKSQSIF 1456


>gi|148237261|ref|NP_001090145.1| helicase-like transcription factor [Xenopus laevis]
 gi|80476497|gb|AAI08610.1| MGC131155 protein [Xenopus laevis]
          Length = 999

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 19/166 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQ 102
              + +L     K      IV   F S L+           +        T  K    IQ
Sbjct: 826 SALMHSLVEQRRKDATIKSIVVSQFTSFLSLIEVALRESGFMFTRLDGSMTQKKRTEAIQ 885

Query: 103 EWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +         ++     + G GLNL    + +      W+    +Q  +R       + 
Sbjct: 886 SFQRPDAQSPTIMLLSLKAGGVGLNLTA-ASRVFLMDPAWNPAAEEQCFDRC-----HRL 939

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           G  + V +   + +++++E +L+    K  +      A K     +
Sbjct: 940 GQTKEVIITKFVVRDSVEENMLKIQSKKRQLAAGAFGAKKSSASQI 985



 Score = 38.2 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 6/47 (12%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANGAVYY 42
           + Y   + E        +    + +   +  +  ++  QL       
Sbjct: 666 EIYESMKNEGKAVISRYVDEGTVLSHYADVLAVLLRLRQLCCHPHLV 712


>gi|328773732|gb|EGF83769.1| hypothetical protein BATDEDRAFT_85620 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1065

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIK----ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR- 92
             A      +  K +  +K+      L  + +       +V   +   L  ++ +  +   
Sbjct: 882  HAGSTIRLQSIKSIPSKKLNTLTNDLLTLQKSDPKIKSVVFSQWTRMLDLVEISMREHGI 941

Query: 93   ---------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     +       +  +  +  + +L A   S G GLNL    + +     WW+  
Sbjct: 942  NFVRMDGSLSQKNREKVLHTFKTDDTVTVLLATLRSTGVGLNLT-VASCVFMLDPWWN-- 998

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + +E   + R  + G  + V V   I +N+++E +L+    K+ +  ++
Sbjct: 999  ---ESVEFQAIDRVHRIGQNKPVTVTRYIMRNSVEEKMLEIQHRKAQLAGVI 1047



 Score = 34.3 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 4/80 (5%)

Query: 2   KQYHKFQRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y    +     L    I    +  +      +  Q+ +  +    +    E     + 
Sbjct: 713 EIYDSLLKHSRHKLMELKIIGKADYMHVFQLLSRMRQMCDHTLLIKSKSLCTEADTASMS 772

Query: 58  ALEVIIEKANAAPIIVAYHF 77
                + K        A  F
Sbjct: 773 IPLEEMIKKYTRGNNSAEFF 792


>gi|294656530|ref|XP_002770282.1| DEHA2D07942p [Debaryomyces hansenii CBS767]
 gi|199431539|emb|CAR65638.1| DEHA2D07942p [Debaryomyces hansenii]
          Length = 828

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
            +    +    IV   F S L  ++    +                +D           +
Sbjct: 668 KLRSDRHTIKSIVFSQFTSMLDLIEWRLKRAGFQTVKLQGSMSPQQRDNTIKYFMENTSV 727

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R+      + G KR + +  
Sbjct: 728 EVFLVSLKAGGVALNL-CEASQVFLMDPWWNPSVEWQSMDRV-----HRIGQKRPIRITR 781

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +++I+  +++    K+T+    +N
Sbjct: 782 FCIEDSIESKIIELQEKKATMIHATIN 808


>gi|194908547|ref|XP_001981791.1| GG12244 [Drosophila erecta]
 gi|190656429|gb|EDV53661.1| GG12244 [Drosophila erecta]
          Length = 1277

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 929  DYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 987

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 988  PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1039


>gi|30089126|emb|CAD35753.1| X-linked nuclear protein [Dugesia japonica]
          Length = 1076

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  +N   + ++ L      + G G+NL    N ++ F + W+        +   +
Sbjct: 791 RADIQSRFNSFEDHRLRLFLISTRAGGMGVNLVA-ANRVIIFDVSWNPSH-----DVQAI 844

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V+VY  ++Q T++E + +R  TK ++   +++ 
Sbjct: 845 FRSYRFGQNKPVYVYRFVSQGTMEEKIYERQVTKQSLSLRVVDE 888


>gi|297192312|ref|ZP_06909710.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719707|gb|EDY63615.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 775

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDPCTI 101
              K++ L  +++ A  N   ++V  +F   LA + +A  +G            +    +
Sbjct: 515 KSAKLERLRELVDDAAANGLKVVVFSYFRDVLAAVGEALDEGVFGPVSGSVPAARRQQLV 574

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+       +L A   + G GLNLQ   ++++              +E   V R  + G
Sbjct: 575 DEFTAAPGHAVLLAQIEAGGVGLNLQA-ASVVIICEPQVKPT-----MEHQAVARAHRMG 628

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             RAV V+ L+A N++D+ +L  L +KS + D 
Sbjct: 629 QVRAVQVHRLLATNSVDQRMLDILESKSRLFDA 661


>gi|281348912|gb|EFB24496.1| hypothetical protein PANDA_003305 [Ailuropoda melanoleuca]
          Length = 1009

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 955

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 956  -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|164422685|ref|XP_001727986.1| hypothetical protein NCU10809 [Neurospora crassa OR74A]
 gi|157069777|gb|EDO64895.1| predicted protein [Neurospora crassa OR74A]
          Length = 702

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPL 111
           ++       ++   + S L  L +   Q               +    I+ +  + ++P+
Sbjct: 541 LQSQTGIKHLIFSAWTSSLRYLAQLMQQAGIPHAQIDGRTSNAERLRHIKAFQEDSQVPV 600

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GL L    + +      W+       +E   + R  + G  + V V   I
Sbjct: 601 LLMSIGTGAVGLTLTA-ASHVHIIEPQWNPS-----VEEQAIGRALRMGQTKEVVVTRYI 654

Query: 172 AQNTIDELVLQRLRTKSTIQ 191
            + T+++ +L   + K  I 
Sbjct: 655 MKGTVEQSILSLQQKKKNIS 674


>gi|320164103|gb|EFW41002.1| chromodomain-helicase-DNA-binding protein 1-like protein
           [Capsaspora owczarzaki ATCC 30864]
          Length = 1103

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      + G GLNL    + ++FF   ++ +      +     R  + G  R V V 
Sbjct: 338 CFVFLLSTRAGGLGLNLVS-ADTVIFFDSDFNPQA-----DLQAAARAHRLGQTRPVRVI 391

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            L+AQ+T++E+VL+R + K  +   ++ 
Sbjct: 392 RLVAQHTVEEIVLRRAQRKLELTHAVIQ 419



 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 6   KFQRELYCDLQGENIEAF------NSASKTVKCLQLANGAVYY-------DEEKHWKEVH 52
           + Q++ Y  +  ++I+AF         +  ++  +  N    +        +        
Sbjct: 150 QLQKKYYKAILKKDIDAFANPTKTRLMNILMELRKCVNHPYLFDGVEPEPFQLGRHLIDA 209

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
             K++ L+ ++   K     +++       L  LQ          + 
Sbjct: 210 STKLRMLDALLPFLKQRGHRVLIFSQMTRMLDILQDYLHFCGYGYER 256


>gi|134078079|emb|CAK40162.1| unnamed protein product [Aspergillus niger]
          Length = 1166

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 24/160 (15%)

Query: 53   DEKIKALEVIIEKAN-AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTI 101
              K+ AL   + +       +V   F S L                            T+
Sbjct: 987  SAKVHALLAHLARVPANTKSVVFSQFTSFLDLISPQLTRAGIHHVRLDGTMPHKARAETL 1046

Query: 102  QEWNE-------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++N            +L     + G GLNL    + +     WW        IE   + 
Sbjct: 1047 AQFNRHRHSTAPPPPTVLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAID 1100

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G  R V V   + +++I+  +L+    K  I   L
Sbjct: 1101 RVHRMGQTRDVQVTRFVVKDSIEGRMLRVQERKMNIAGSL 1140


>gi|255077082|ref|XP_002502193.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226517458|gb|ACO63451.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 786

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSL 137
           ++L             D     ++ +N G+   ++     + G GLNL     ++  F  
Sbjct: 559 AELGLATDRLDGRVPPDARSGLVRNFNAGRGGRVMLLSCVAGGAGLNLVGACRLV-LFDT 617

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            W+        +   + R  + G  R V +Y L+A  T++E V QR   K      
Sbjct: 618 SWNPAH-----DNQAMARVWRDGQTRPVTIYRLLAAGTVEEKVFQRQLLKHREAAA 668


>gi|61402625|gb|AAH91795.1| LOC553504 protein [Danio rerio]
          Length = 1069

 Score = 77.5 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 12/177 (6%)

Query: 31  KCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV-AYHFNSDLARLQ 85
           +C Q A    +  +Y  + K  +++ +  I   + ++  + +  ++     F        
Sbjct: 424 RCKQAAFEAMSDPMYSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESFCMAEGLEY 483

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          ++E+N  + + L      + G GLN   G N++V F   W+    
Sbjct: 484 HRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPAND 542

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++      
Sbjct: 543 LQAIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENAR 594


>gi|281206497|gb|EFA80683.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1959

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            R            +    I ++N+   +  L      +   G NL   G  ++   L W+
Sbjct: 1733 RDYYRLDGAVRPQERQNLINKFNDTGNQCKLFIISTKAGSLGTNLTA-GTRVILMDLLWN 1791

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + ER  V R  + G  + V+VY LI   +++E +  RL  K ++    ++
Sbjct: 1792 P-----VHERQAVYRCFRIGQTKPVYVYTLIIAGSLEENIYNRLVFKQSLAKRAID 1842


>gi|242214113|ref|XP_002472881.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728002|gb|EED81905.1| predicted protein [Postia placenta Mad-698-R]
          Length = 799

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA---------- 82
           +++  +   +          K+ AL   +   ++     IV   + S L           
Sbjct: 600 MSDHLIATWKRGDNNLEPSTKMLALVEHLQEWESTGDKTIVFSQWTSMLDLLETLFSRYG 659

Query: 83  -RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R  +   +     ++    Q    G   ++       G GLNL    N L+   L W+ 
Sbjct: 660 IRSLRYDGKMSREARELVLSQFRKSGGPKVILISTKCGGVGLNLVS-ANRLINMDLGWNY 718

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               Q  +R+      + G ++ VFV  L+ +NTI+E +L+   TK  + +  L  
Sbjct: 719 ASESQAYDRV-----HRLGQEKEVFVKRLVVRNTIEERMLKLQETKVGLAEAALGE 769



 Score = 39.0 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 29/135 (21%), Gaps = 3/135 (2%)

Query: 2   KQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y  F++     +    ++          ++  QL         +    E     + + 
Sbjct: 306 ELYDNFEKRARIQINRFLKDNNVVKKCVLILRMRQLCCHPNLILRQAEGFEDPTLLVGSD 365

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQK-AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
                      +   +        ++       R          E +E +          
Sbjct: 366 ADKEVARANTMLGPQWVMEVWEQLIRVLRSFMARAKASQLEFDDEMDEPEPTCPVCGDLF 425

Query: 119 CGHGLNLQYGGNILV 133
                 L   G+ + 
Sbjct: 426 MNDSGRLLACGHEIC 440


>gi|254244620|ref|ZP_04937942.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
 gi|126197998|gb|EAZ62061.1| hypothetical protein PA2G_05487 [Pseudomonas aeruginosa 2192]
          Length = 666

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 450 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 508

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 509 LLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDRFQQDPDC 568

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 569 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 622

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 623 PLVEATIDEQLWQLLNAKRQVAQDLIE 649


>gi|254238775|ref|ZP_04932098.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
 gi|126170706|gb|EAZ56217.1| hypothetical protein PACG_04939 [Pseudomonas aeruginosa C3719]
          Length = 676

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 450 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 508

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 509 LLSELDAEDKVILFCEFKPTVAALKELCEQAGLGCVTLVGNDSLTKRQKAIDRFQQDPDC 568

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 569 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 622

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 623 PLVEATIDEQLWQLLNAKRQVAQDLIE 649


>gi|107099852|ref|ZP_01363770.1| hypothetical protein PaerPA_01000872 [Pseudomonas aeruginosa PACS2]
 gi|37955686|gb|AAP22525.1| putative helicase [Pseudomonas aeruginosa]
          Length = 657

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 441 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 499

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 500 LLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDRFQQDPDC 559

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 560 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 613

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 614 PLVEATIDEQLWQLLNAKRQVAQDLIE 640


>gi|116052602|ref|YP_792917.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481700|gb|AAP84214.1| DNA helicase [Pseudomonas aeruginosa PA14]
 gi|115587823|gb|ABJ13838.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 657

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQ------LANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++++   L+G+  +     + + +  Q      L +  V+       + +   K++    
Sbjct: 441 RKDVLPSLKGKQRQLLKV-ALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMD 499

Query: 62  IIEK-ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKI 109
           ++ +      +I+   F   +A L++   Q            +L K    I  +  +   
Sbjct: 500 LLSELDAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDRFQQDPDC 559

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +     A+ G G NL    N + F  L W   + +         R  + G  R V V  
Sbjct: 560 RVFICTTAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKI 613

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + + TIDE + Q L  K  +   L+ 
Sbjct: 614 PLVEATIDEQLWQLLNAKRQVAQDLIE 640


>gi|297843184|ref|XP_002889473.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335315|gb|EFH65732.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 876

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK---------DP 98
            H  K++ALE ++    +    I++  +    L    +    +G +  +           
Sbjct: 526 KHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQ 585

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++N      +      + G GLNL    N +V F   W+        +     R  
Sbjct: 586 SLVDDFNASPSKQVFLISTKAGGLGLNLVS-ANRVVIFDPNWNPSH-----DLQAQDRSF 639

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G KR V V+ L++  +++ELV  R   K  + ++ +
Sbjct: 640 RYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV 677


>gi|167379641|ref|XP_001735221.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165902890|gb|EDR28599.1| chromodomain helicase DNA binding protein, putative [Entamoeba
           dispar SAW760]
          Length = 1044

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 97  DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N  +    +      + G G+NL    + ++ +   W+ +      +     
Sbjct: 555 RQRAMDHFNAKDSTDFVFLLSTRAGGLGINLTT-ADTVIIYDSDWNPQN-----DLQAQA 608

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G ++ V +Y L  + TI+E +L   + K  +  L++  ++K+ 
Sbjct: 609 RCHRIGQEKTVNIYRLATEGTIEEKILLSAKKKLVLDHLIIQTMEKKG 656


>gi|317026691|ref|XP_001399362.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1116

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             D+    +         +     +  N   I +L A   + G GLNL    + +      
Sbjct: 983  HDITGFTRLDGTMSLAARSKALEELHNNPDITVLLATIGAGGVGLNLTA-ASKVYIMEPQ 1041

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            ++     Q ++R+      + G  R V     + + +I+E + +  + K  + DL LN  
Sbjct: 1042 YNPAAVAQAVDRV-----HRIGQTREVTTVQFLMKGSIEEKIFELAKKKQQLADLSLNRG 1096

Query: 199  KKETIHV 205
            K +   V
Sbjct: 1097 KLDKKEV 1103


>gi|224013864|ref|XP_002296596.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968948|gb|EED87292.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 101

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 95  DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           DK    +  +N + K+        S G G+NL  G + +VF+   W+       ++    
Sbjct: 9   DKRQRLMDRFNTDTKVFCFILSTRSGGLGINLT-GADTVVFYDSDWNPA-----MDAQAQ 62

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            R  + G  R V +Y ++ +++I+E +L + + K  + 
Sbjct: 63  DRAHRIGQTREVHIYRMVTEHSIEENILTKAKQKRNLD 100


>gi|198276225|ref|ZP_03208756.1| hypothetical protein BACPLE_02416 [Bacteroides plebeius DSM 17135]
 gi|198271037|gb|EDY95307.1| hypothetical protein BACPLE_02416 [Bacteroides plebeius DSM 17135]
          Length = 558

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 21/207 (10%)

Query: 2   KQYHKFQRELYCDL------QGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L   L        E IE         +     Q++            + V 
Sbjct: 341 KEYIDAERDLIMYLQKYKEADDEKIEKALRGEVMVRINILRQIS---ARGKVRDVIEFVK 397

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D +    ++I+  +      V     S          +    +K        N  K  ++
Sbjct: 398 DFRENGKKIILFCSLHE---VVDQLKSYFPTAVSVTGRDSQDEKQRAVDSFQNNPKTDII 454

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    N + F    W   +  Q  +R       + G K +V  YY + 
Sbjct: 455 ICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSVTCYYFLG 508

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
           + TIDE V + ++ K  I   +  + +
Sbjct: 509 RRTIDEKVYRIIQNKKAIAKDVTGSTE 535


>gi|255081212|ref|XP_002507828.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226523104|gb|ACO69086.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1983

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 75/249 (30%), Gaps = 61/249 (24%)

Query: 2    KQYHKF--QRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEK------------ 46
            + Y++   +++++  + G ++       +  ++  ++ N     D  +            
Sbjct: 802  RAYYRMIYEKQVHVLMDGNKSKNVPQLRNLCMELRKVCNHPFLCDGMEEDFANKKKRAVE 861

Query: 47   ---------------------------HWKEVHDEKIKALEVIIEKA--NAAPIIVAYHF 77
                                               K+  L  ++ K       +++   F
Sbjct: 862  LAAEKAAKEAVEKGLEPPAAPAPPQPLDMITQSSGKMMLLNKLLPKLKAEGHKVLIFSQF 921

Query: 78   N---------SDLARLQKAFPQGRTLD-KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQ 126
                       DL   +     G T        I  +N  GK  +      + G G+ L 
Sbjct: 922  AIVLNILSDYLDLMGYEHERLDGSTSQADRQAGIDRFNTPGKGFVYLLSTRAGGMGITLT 981

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               +  + +   W+ +      +   + R  + G  + V VY L+ + T ++ + +    
Sbjct: 982  A-ADTAIIYDSDWNPQN-----DLQAMARCHRIGQTKEVKVYRLVTKATYEQSLFETSSK 1035

Query: 187  KSTIQDLLL 195
            K  + + +L
Sbjct: 1036 KYGLDEAVL 1044


>gi|37651342|ref|NP_932651.1| global transactivator-like protein [Choristoneura fumiferana DEF
           MNPV]
 gi|37499251|gb|AAQ91650.1| global transactivator-like protein [Choristoneura fumiferana DEF
           MNPV]
          Length = 499

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 38/226 (16%)

Query: 3   QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------- 48
            Y K +        +       +     +      +  Q+            +       
Sbjct: 265 VYDKLKSESQRAYDDAVAGGGDKTRNMQDVLWLLCRLRQMCCHPALTKCAHMFADQATIF 324

Query: 49  -KEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
             +    K + +  I+++        +++   +   L  + K   Q              
Sbjct: 325 EPQYASSKCRRVLEIVQQVLDTPNDKVVLVSQWVEFLYIVAKLLRQRGIPILLYTGQLRV 384

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++      ++N  +    +L       G GLNL  GGN +V     W+ +     IE   
Sbjct: 385 EERTAVENQFNAADSPYRVLLMSINCGGVGLNLT-GGNHIVMLEPHWNPQ-----IELQA 438

Query: 153 VTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
            +R  + G K+  +VY ++    N+I+  +  R   K T  + + +
Sbjct: 439 QSRIHRMGQKKQTYVYKMLNDEDNSIERYMKMRQDKKLTFVNKVFD 484


>gi|66811190|ref|XP_639303.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60467929|gb|EAL65942.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 931

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 28/189 (14%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSD 80
             +  +K              K ++  +  K+  ++ ++       +    ++  ++   
Sbjct: 594 VGTSILKL------FPKEWNPKVFQPQYSSKLLFVDRLLANIRNSKSGDKTVIISNYTQT 647

Query: 81  LA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L                        K    +  +N+   P  +      + G GLNL  G
Sbjct: 648 LEVLATMCKTRGYAYFQLDGSTANAKRQQLVNLYNDPARPEFVFLLSSKAGGVGLNL-IG 706

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           GN LV F   W+        +   + R  + G K+ V +Y      TI+E + QR  TK 
Sbjct: 707 GNHLVLFDADWNPAN-----DAQSMARVWREGQKKIVSIYRTFTTGTIEEKIFQRQLTKQ 761

Query: 189 TIQDLLLNA 197
            +   +   
Sbjct: 762 ALSTSITEG 770


>gi|195349449|ref|XP_002041257.1| GM10241 [Drosophila sechellia]
 gi|194122952|gb|EDW44995.1| GM10241 [Drosophila sechellia]
          Length = 1308

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 959  DYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1017

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1018 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1069


>gi|115473863|ref|NP_001060530.1| Os07g0660200 [Oryza sativa Japonica Group]
 gi|113612066|dbj|BAF22444.1| Os07g0660200 [Oryza sativa Japonica Group]
          Length = 631

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LLFAH 115
              +++       L  L +         +              ++ +N            
Sbjct: 19  NHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLS 78

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NL    + ++ F   W+ +      +   ++R  + G +  V +Y  +   +
Sbjct: 79  TRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAMSRAHRIGQQETVNIYRFVTCKS 132

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           ++E +L+R + K  +  L++  L  E 
Sbjct: 133 VEEDILERAKKKMVLDHLVIQKLNAEG 159


>gi|225557865|gb|EEH06150.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           G186AR]
          Length = 928

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I++   +A     +V   + S L  ++              
Sbjct: 745 NEIDIDSETTSSKIQALLKILKAKGQAPNTKTVVFSQWVSFLDIVESQLVRNGITFARID 804

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 805 GKMSSAKRDAAMNALSNDSNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 858

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 859 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTLM 901


>gi|195497929|ref|XP_002096309.1| GE25130 [Drosophila yakuba]
 gi|194182410|gb|EDW96021.1| GE25130 [Drosophila yakuba]
          Length = 282

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS I
Sbjct: 2   CVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 56

Query: 191 QDLLLNA 197
           Q ++++ 
Sbjct: 57  QRMVISG 63


>gi|221484235|gb|EEE22531.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 1345

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 68/228 (29%), Gaps = 57/228 (25%)

Query: 28  KTVKCLQLANGAVYYD---------------------------EEKHWKEVHDEKIKALE 60
             ++  +  N    +                            ++         KI A+E
Sbjct: 411 LFMQLRKCCNHPALFHLGASCTSAVSAGTRDSEETRSDSVAEGDDAESLLRDSSKIAAVE 470

Query: 61  VII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGK 108
            I+         ++V     + L  ++    +               +    I  ++   
Sbjct: 471 AILSFYLPRQEKVVVFSFSTAMLDLVEDYLDEKGIVSARLDGRMGDGERRAAIAAFSAQP 530

Query: 109 IP---------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                            +      + G+GL L +  ++ VF        +    +ER  +
Sbjct: 531 SENARQSPQGSHEACAAVFLVSVRAGGYGLTLSHCASVCVFLEGG---GDGNPQVERQAI 587

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V V  LI ++T++E++  R R K  +   +L+  + +
Sbjct: 588 ARLYRQGQTKKVKVIRLITRSTVEEVMYWRGRQKLKLVADVLSEDEND 635


>gi|9632111|ref|NP_048904.1| hypothetical protein PBCV1_A548L [Paramecium bursaria Chlorella
           virus 1]
 gi|2447053|gb|AAC96911.1| similar to Caenorhabditis transcription activator, corresponds to
           Swiss-Prot Accession Number P41877 [Paramecium bursaria
           Chlorella virus 1]
          Length = 458

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 19/198 (9%)

Query: 17  GENIEAFNSASKTVKCLQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           G+         + ++  Q       +Y + E    E +  K+  L   I+       ++ 
Sbjct: 245 GDGEGRMRLLEQLMRMRQCVTNPQILYANSEDEKWEGNRTKLNMLRKEIQNNPVEKTLIF 304

Query: 75  YHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
            ++  ++  +++                   +    I+ +N +  I        S G GL
Sbjct: 305 CNWICEMDAIREMLHSIGHKSVTLNGKTPNSQRDVNIKSFNEDNDINFFIIQIESGGIGL 364

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ     +   SL W+        E   + R  + G    V V  LI  NT DE VL  
Sbjct: 365 NLQ-VATRVFINSLSWNATT-----EIQAIARAHRIGQTANVIVKRLIIDNTFDEHVLNL 418

Query: 184 LRTKSTIQDLLLNALKKE 201
            + K  I   + +  + E
Sbjct: 419 QQKKLEIASEIFDDKRIE 436


>gi|68072323|ref|XP_678075.1| DNA repair protein rad54 [Plasmodium berghei strain ANKA]
 gi|56498427|emb|CAH96805.1| DNA repair protein rad54, putative [Plasmodium berghei]
          Length = 860

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              I+ K N    +                  G ++ K    I ++ N   I +      
Sbjct: 572 YMEILCKENHYKFVR--------------LDGGISIKKRHKVISDFTNTDDIFIFLLSSK 617

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL    N L+     W+        ++  + R  + G K+  ++Y L    TID
Sbjct: 618 SGGCGINL-ISSNRLILLDPDWNPAN-----DKQALARVWREGQKKICYIYRLFCTGTID 671

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E V QR  +K  +  +++
Sbjct: 672 EKVYQRQISKDGLSSMIV 689


>gi|325190695|emb|CCA25191.1| DNA repair and recombination protein RAD54 putative [Albugo
           laibachii Nc14]
          Length = 910

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 60/246 (24%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD------------------ 43
           K Y +F  E          +  N         +L N  +                     
Sbjct: 443 KLYKRFL-ESKAMRNIMKQQNVNVLPSITALKKLCNHPLLLFKDDGTALLKLPGFEDCQQ 501

Query: 44  --------------------EEKHWKEVHDEKIK---ALEVIIEKANAAPIIVAYHFN-- 78
                               +++        K++    L  ++ K     I+V  ++   
Sbjct: 502 IIASEQKNNFTSGQRAFSTNQKQTCHPGWSGKLQLLDHLMQMMRKETKERIVVVSNYTQT 561

Query: 79  --------SDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYG 128
                   S+            +  K    +  +N+             + G GLNL  G
Sbjct: 562 LDLVSLLCSERNWPFVRLDGTISPKKRQQMVDVFNDPTTHSFAFLLSSKAGGCGLNL-IG 620

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N LV F   W+        ++    R  + G K+  +VY  +A  +++E + QR  +K 
Sbjct: 621 ANRLVLFDPDWNPAT-----DKQAAARVWREGQKQMCYVYRFLATGSLEEKIFQRQLSKE 675

Query: 189 TIQDLL 194
            +Q ++
Sbjct: 676 GLQSIV 681


>gi|326670150|ref|XP_689596.5| PREDICTED: hypothetical protein LOC553504 [Danio rerio]
          Length = 1269

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 31  KCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +C Q A    +  +Y  + K  +++ +  I   + ++  + +  ++           L+ 
Sbjct: 426 RCKQAAFEAMSDPMYSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMAEGLEY 485

Query: 87  AFPQGRTLDKDP-CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
               G T  KD    ++E+N  + + L      + G GLN   G N++V F   W+    
Sbjct: 486 HRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPAND 544

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++      
Sbjct: 545 LQAIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENAR 596


>gi|23193483|gb|AAN14536.1|AF459086_1 SNF2P [Oryza sativa Japonica Group]
 gi|23193485|gb|AAN14537.1| SNF2P [Oryza sativa Japonica Group]
          Length = 894

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 79/230 (34%), Gaps = 40/230 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEV 51
           K Y    ++EL       G      +  +  ++  + ++    +         E      
Sbjct: 308 KLYLSVLRKELQTLLTFTGGLSRHQSLQNIVIQLRKASSHPYLFSGIEPEPYVEGEHLVQ 367

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++I++K +     +++       L  LQ      +   +             
Sbjct: 368 ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGSVRAEERFA 427

Query: 98  ----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        +++ N+    +      + G GLNL  G + ++F+   W+ +     
Sbjct: 428 AIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA---- 482

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + R  + G    V    L++Q TI+E++++R   K  +   ++  
Sbjct: 483 -DKQALQRAHRIGQLNNVLSINLVSQRTIEEVIMRRAERKLKLSHSVIGE 531


>gi|328707730|ref|XP_001950458.2| PREDICTED: hypothetical protein LOC100159378 [Acyrthosiphon pisum]
          Length = 1320

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 19/149 (12%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGK 108
            + ++ + N    I+   + S L  ++K            F     + K    I+E+N+  
Sbjct: 1157 QKVLIEGNKEKAIIVSQWPSFLYLIRKHLETTGNAKMEMFSGAIPIPKRNKIIREFNQPN 1216

Query: 109  I--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    N +    + W+ +   Q  +R+      + G  + V+
Sbjct: 1217 SGPQILLLSLKAGGVGLNLMA-ANHMFLVDIHWNPQLEAQACDRV-----YRVGQTKPVY 1270

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            VY  I  NTI+  ++     K  + D L 
Sbjct: 1271 VYKFICSNTIETRIMNIQTHKLQMADNLF 1299



 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 5/54 (9%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            +K + +F+       +   I+ ++     ++  Q+    +        + +  E
Sbjct: 1034 IKLFRQFK-------EINEIQTYHILVLLLRLRQICCHPILIKGPITEESIKKE 1080


>gi|330845768|ref|XP_003294743.1| hypothetical protein DICPUDRAFT_100046 [Dictyostelium purpureum]
 gi|325074740|gb|EGC28734.1| hypothetical protein DICPUDRAFT_100046 [Dictyostelium purpureum]
          Length = 1445

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTI 101
            +    +  ++      IV   + S L                    F    T  +    +
Sbjct: 1263 LHTDMLNDKEKEDEKCIVFSQWTSMLSLIENIFIENGWKKNIHYSRFDGTLTSVQRDRVL 1322

Query: 102  QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            Q +N +    ++       G GLNL    N +     WW++           + R  + G
Sbjct: 1323 QAFNQDDGPRVMLMGLRCGGVGLNLTR-ANRVYLMDPWWNIALQ-----NQAIGRVHRMG 1376

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             K+ V+V   I + +I+  +LQ   +K  + + + + 
Sbjct: 1377 QKKEVYVKNYIMEESIEIRILQLQESKEELAEAIFSD 1413


>gi|302676696|ref|XP_003028031.1| hypothetical protein SCHCODRAFT_60278 [Schizophyllum commune H4-8]
 gi|300101719|gb|EFI93128.1| hypothetical protein SCHCODRAFT_60278 [Schizophyllum commune H4-8]
          Length = 765

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 19/194 (9%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQ--LANGAVYYDEEKHWKEVHDEKIKA 58
           +++Y    + +  D+  +  + +   + ++  LQ  +      + +E   K +   K   
Sbjct: 434 IERYADLNKRVMKDIYADEGKRY-KLTYSLAILQRDMCGKLDQWYKEGSNKVLIFTKSLK 492

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           L  ++E          +H   D    +K         +     +   + ++        +
Sbjct: 493 LMEVLE----------FHMKRDSYEFRKLDGSVPQKYRQKYIDEFNEQPEVFCFLISTLA 542

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NL    N +V F   W+        +   + R  + G  R V+VY L+   +++E
Sbjct: 543 GGTGINLTA-ANKVVIFDPNWNPAH-----DLQAMDRAFRYGQTRDVYVYRLLGGGSLEE 596

Query: 179 LVLQRLRTKSTIQD 192
           LV  R   K     
Sbjct: 597 LVYARQLYKQQQMA 610


>gi|302505721|ref|XP_003014567.1| hypothetical protein ARB_07129 [Arthroderma benhamiae CBS 112371]
 gi|291178388|gb|EFE34178.1| hypothetical protein ARB_07129 [Arthroderma benhamiae CBS 112371]
          Length = 921

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 17/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
               +V   + S L  ++               +  +  +D    +   + +  ++ A  
Sbjct: 766 GTKTVVFSQWTSFLDLIEPHLVLYNINFARIDGKMNSAKRDAAMSKFSRDSECTVMLASL 825

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             C  GLNL    N +V    WW        IE   V R  + G  R   ++ L+ +N+I
Sbjct: 826 NVCSVGLNLVA-ANQVVLADSWWAPA-----IEDQAVDRVYRLGQTRPTTIWRLVMENSI 879

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ VL   + K  +       
Sbjct: 880 EDRVLDIQKEKRELMSTAFQE 900



 Score = 34.3 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 3/30 (10%), Positives = 10/30 (33%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +G+     +     ++  Q+ N      + 
Sbjct: 612 KGKKTTYSHVLEVLLRLRQVCNHWKLCHDR 641


>gi|212535646|ref|XP_002147979.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210070378|gb|EEA24468.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1784

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA--YHFNSDLARLQKAFPQGRTLD 95
               +      +K++ +E ++  + I+  + + P +        S   R  +   +     
Sbjct: 1378 DPKHSYRADIFKKIVEESVRVGDKILCFSQSIPSLNYLETLLRSSGVRFNRLDGKTAVKS 1437

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +        N   I +      + G GLN+  G N ++ F   ++        E   V R
Sbjct: 1438 RQEAVKDFNNRDDIKVYLISTRAGGLGLNIT-GANRVIIFDFSFNPT-----WEEQAVGR 1491

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V++Y  ++  T +E+V  +   K+ +   +++
Sbjct: 1492 AYRLGQKKPVYIYRFLSGGTYEEVVHNKSIFKTQLAMRVVD 1532


>gi|297741672|emb|CBI32804.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A   + G G+NL    + +     WW+       +E   + R  + G K  V +  L
Sbjct: 713 VLLASLKASGAGINLTA-ASRVYLLEPWWNPA-----VEEQAMDRVHRIGQKEDVKIVRL 766

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           IA+N+I+E +L+    K  +      
Sbjct: 767 IARNSIEERILELQERKKKLAKEAFG 792


>gi|195155527|ref|XP_002018655.1| GL25835 [Drosophila persimilis]
 gi|194114808|gb|EDW36851.1| GL25835 [Drosophila persimilis]
          Length = 1332

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 18/150 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGKIP--LL 112
           KAN   +++       L  L+      +   +              I  +++      + 
Sbjct: 12  KANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVF 71

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    + ++ +   W+ +      +     R  + G ++ V +Y L+ 
Sbjct: 72  LLCTKAGGLGINLTA-ADTVIIYDSDWNPQN-----DLQAQARCHRIGQRKMVKIYRLLC 125

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +NT +  +  +   K  +   +L ++  + 
Sbjct: 126 RNTYEREMFDKASMKLGLDKAVLQSMNTQG 155


>gi|195158016|ref|XP_002019890.1| GL11967 [Drosophila persimilis]
 gi|194116481|gb|EDW38524.1| GL11967 [Drosophila persimilis]
          Length = 220

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS IQ
Sbjct: 3   VIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEIQ 57

Query: 192 DLLLNA 197
            ++++ 
Sbjct: 58  RMVISG 63


>gi|164423632|ref|XP_962645.2| hypothetical protein NCU07975 [Neurospora crassa OR74A]
 gi|157070175|gb|EAA33409.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 898

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 20/174 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA------- 87
            +   DEE+   E    K +A+  +++       + II+   + S L  +Q         
Sbjct: 710 HSATQDEEELESETKSSKTEAVLALVKGTLDKEGSKIIIFSQWTSFLTIIQHQLDEAGYT 769

Query: 88  ---FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                      +    I+  + +    +L A    C  GLNL    + ++    WW    
Sbjct: 770 YTRIDGSMNAAQRDAAIRALDYDPNTRILLASLGVCSVGLNLVS-ADTVILADSWWAPA- 827

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               IE   V R  + G  R   V+ L+  N+I+E VL   + K  +       
Sbjct: 828 ----IEDQAVDRVHRLGQTRPTTVWRLVMDNSIEERVLDIQKEKRELVGKAFQE 877


>gi|317034188|ref|XP_001396165.2| DNA repair protein RAD16 [Aspergillus niger CBS 513.88]
          Length = 652

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKI 109
            +  K      IV   F S L  ++                 T  +   +I+ + N   +
Sbjct: 490 KLRSKKQTLKSIVFSQFTSMLQLVEWRLRRAGFNTVMLDGTMTPAQRQNSIEYFMNNVDV 549

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q  +R       + G +R   +  
Sbjct: 550 EVFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQRRPCVITR 603

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           L  +++++  ++     K+ + +  +N  + E + 
Sbjct: 604 LCIEDSVESRIVLLQEKKANLINGTINKDQGEALE 638


>gi|302819150|ref|XP_002991246.1| hypothetical protein SELMODRAFT_429595 [Selaginella moellendorffii]
 gi|300140957|gb|EFJ07674.1| hypothetical protein SELMODRAFT_429595 [Selaginella moellendorffii]
          Length = 1551

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 29/169 (17%)

Query: 52   HDEKIKALEVIIEKAN------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
               KI A+   +                    +V   + S L  ++    +     +   
Sbjct: 950  SSSKINAVMERLMNLPVTSPAAAGKKAVTEKALVFSQWTSLLDLVEPRLEKAGLEFRRLD 1009

Query: 98   --------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       + E+NE  ++ ++         GLN+    + ++   +WW+       +
Sbjct: 1010 GTMSVMERDAAVCEFNEKPEVSVMLMGLKVGSLGLNMVAACH-VLLLDVWWNPT-----V 1063

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            E   + R  + G  R V V     + TI++ +L     K  +       
Sbjct: 1064 EDQAIDRAHRIGQTRDVHVTRFTVKKTIEDRILALQEQKKQMVSSAFGE 1112



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y   ++      Q             N     ++  Q         E+K  K   +E   
Sbjct: 816 YDSLEQRSRDKFQSYQRRGTVQKNYANIMVLLLRLRQACCHRSLVPEDKESKIEDEESNI 875

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             +  +             F S    +  +      L      
Sbjct: 876 DAKENVSICTICEDAPEQPFLSCCGHVFCSQCISEKLLTSEEL 918


>gi|94268376|ref|ZP_01291158.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
 gi|93451632|gb|EAT02425.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
          Length = 1022

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 32  CLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF- 88
             Q  +A  A    +++       +++  +   +   +    +V   +      +++   
Sbjct: 585 LQQARMACDAAGLVDKESVGSPKIDELAQILDEVCLQSGLKAVVFSQWELMTRMVEQRLR 644

Query: 89  ---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      G    K    ++ +      L+F    + G GLNLQ   ++LV   + W
Sbjct: 645 RLGIGYVRLHGGVPTAKRGELLERFRSDDSVLVFLSTDAGGVGLNLQS-ASVLVNLDVPW 703

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +    +Q   RI      + G    V +  ++A N+ +E VL  ++ K  + D ++    
Sbjct: 704 NPAVLEQRNGRI-----HRLGQPNKVQIITMVAANSYEEQVLSLVQNKQALFDQVIAEDA 758

Query: 200 KETI 203
            E +
Sbjct: 759 SEDV 762


>gi|254580745|ref|XP_002496358.1| ZYRO0C16544p [Zygosaccharomyces rouxii]
 gi|238939249|emb|CAR27425.1| ZYRO0C16544p [Zygosaccharomyces rouxii]
          Length = 759

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  +     +                +D          +  +      +
Sbjct: 608 KSIVFSQFTSMLDLIDWRLKRAGFETVKLQGSMSPTQRDETIKYFMKNIRCEVFLVSLKA 667

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 668 GGVALNL-CEASQVFIMDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIES 721

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    +N  +     +
Sbjct: 722 RIIELQEKKANMIHATINQDEAAINRL 748


>gi|150866903|ref|XP_001386652.2| hypothetical protein PICST_33727 [Scheffersomyces stipitis CBS
           6054]
 gi|149388159|gb|ABN68623.2| conserved hypothetical protein [Scheffersomyces stipitis CBS 6054]
          Length = 832

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 78/219 (35%), Gaps = 36/219 (16%)

Query: 8   QRELYCDLQGE----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           +R +   +  +     I   +  +  ++   + N    Y E    K+    + K +++++
Sbjct: 518 KRLMLLQVLHKKIRREIRGLSLQNSMMQLRNICNSPYIYFEPFPIKDSTSHEKKFMDILV 577

Query: 64  EKAN---------------AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KD 97
           + ++                  I++   F   L  L   F                  +D
Sbjct: 578 QNSSKIQVLQQLCFPLIEANHKILIFSQFTKLLDLLHDWFNYQNIKICRLDGSTSQAVRD 637

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               Q  ++    +      + G G+NL    + ++ F   W+ +     ++   + R  
Sbjct: 638 EQITQFNSDKDTKVFLLSTRAGGLGINLTA-ADTVILFDNDWNPQ-----MDLQAIDRVH 691

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G    V V+  + +++I+EL++    +K  ++ L++ 
Sbjct: 692 RIGQTNPVKVFRFLIRDSIEELLISSSCSKRFLETLVIQ 730


>gi|258576005|ref|XP_002542184.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902450|gb|EEP76851.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 960

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            ++   ++V  H    L  LQ  F              + +     + ++N + +  +  
Sbjct: 615 HSHGDKVLVFSHSVRLLKMLQLLFNHTSYNVSYLDGAMSYEDRAKVVNDFNADPRQFVFL 674

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 675 ISTKAGGVGLNITS-ANKVVVVDPNWNPSH-----DLQAQDRAYRIGQLRDVEVFRLVSA 728

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 729 GTIEEIVYARQIYKQQQAN 747


>gi|315051734|ref|XP_003175241.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma
           gypseum CBS 118893]
 gi|311340556|gb|EFQ99758.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma
           gypseum CBS 118893]
          Length = 945

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 557 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNVVNAFNSDPRQFVFL 616

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 617 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 670

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 671 GTIEEIVYARQIYKQQQAN 689


>gi|167516624|ref|XP_001742653.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779277|gb|EDQ92891.1| predicted protein [Monosiga brevicollis MX1]
          Length = 649

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 52  HDEKIKALEVIIEKANA----APIIVAYHFNSDLARLQKAFPQG----------RTLDKD 97
              KI+A+   +    +       IV   F + L  L+    +            +    
Sbjct: 478 SSTKIEAILEELRSGQSASSSIKTIVFSQFTTFLDLLEWRLQRAGIRCVKLDGRMSPQHR 537

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N +  +        + G  LNL    +  +    WW+     Q ++RI     
Sbjct: 538 ADVIEAFNTQPHLTAFLISLKAGGLALNLVS-ASRCIICDPWWNPATESQAMDRI----- 591

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + G  R V V  LI +N+I+  + Q    K  + +  + 
Sbjct: 592 HRLGQNRPVEVIRLIVENSIESRIDQLQEKKRLLFESTVG 631


>gi|329664188|ref|NP_001192361.1| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin subfamily A containing DEAD/H box 1 [Bos
            taurus]
 gi|297475700|ref|XP_002688182.1| PREDICTED: KIAA1122 protein-like [Bos taurus]
 gi|296486709|gb|DAA28822.1| KIAA1122 protein-like [Bos taurus]
          Length = 1029

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 842  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 901

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 902  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 956

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  + V V  LI Q TI+E +L+  + K  ++  +
Sbjct: 957  -YNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDM 1004


>gi|300933243|ref|ZP_07148499.1| hypothetical protein CresD4_04190 [Corynebacterium resistens DSM
           45100]
          Length = 836

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLA--------RLQKAF 88
           G    D  + +      K++ +  +++  A+ A  I+  +F S L         R     
Sbjct: 638 GHF-MDMRQAFSGPRSAKMERITELLDDGADGAKTIIFTYFRSVLDGLVAHLGDRAFGPI 696

Query: 89  PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G +  +    + ++       +L     +   GLN+Q   + +V F    +       
Sbjct: 697 AGGVSHQERQKAVDDFTAASPGAVLVCQITAASEGLNIQA-ASRVVIFEPQLNPA----- 750

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +E   V R  + G  R V V+ L+  ++++E +   L  K  + + 
Sbjct: 751 VEAQAVARAHRMGQIRTVEVHRLLTPDSVEEQLTAMLADKRALFER 796


>gi|146229770|gb|ABQ12335.1| global transactivator-like protein [Antheraea pernyi
           nucleopolyhedrovirus]
          Length = 495

 Score = 77.1 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 35/223 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKE-------- 50
            Y   + E           A            +  Q+            +KE        
Sbjct: 264 VYDCLKSESQRAFDEAVAGAPRGMQAVLWLLCRLRQMCCHPALAKCADLFKEQAHIFEPG 323

Query: 51  VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKD 97
               K +    +++    +    +++   +   L  + +           +      ++ 
Sbjct: 324 YKSSKCRRALELVQRVLDSPDDKVVLVSQWVEFLHIVAEQLRALSVPVLLYTGRLRTEER 383

Query: 98  PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +N  +    +L       G GLNL  GGN LV     W+ +     +E     R
Sbjct: 384 AAVENRFNDADSPYRVLLMSIKCGGVGLNLT-GGNHLVLLEPHWNPQ-----VELQAQGR 437

Query: 156 QRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
             + G ++   VY ++   +N+++  +  R   K    D + +
Sbjct: 438 IHRLGQRKRAHVYKMLVDEENSVERYMKTRQDKKLEFVDKVFD 480


>gi|291236092|ref|XP_002737975.1| PREDICTED: predicted protein-like, partial [Saccoglossus
           kowalevskii]
          Length = 759

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +     +   +  + +      + G GLN+  G NI++ F   W+    Q        
Sbjct: 26  PVRMNYVHEFNQDKSVSVCLISTKAGGLGLNMT-GANIVIIFDPNWNPAHDQ-----QAQ 79

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +R V VY LI+  TI+E +  R   K  I   L+++
Sbjct: 80  DRAYRIGQQRDVKVYRLISSGTIEENMYLRQIYKQQIASTLVSS 123


>gi|115457136|ref|NP_001052168.1| Os04g0177300 [Oryza sativa Japonica Group]
 gi|113563739|dbj|BAF14082.1| Os04g0177300 [Oryza sativa Japonica Group]
          Length = 664

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
           +  +         K+  L  I+E  +      IV   F S    L+  F Q         
Sbjct: 486 FQVDPENNWKDSCKVIKLIKILEGLQEKREKSIVFSQFTSFFDLLEVPFNQKGIKFLRFD 545

Query: 93  ---TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +       ++E++E K   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 546 GKLSQKHREKVLKEFSESKDKLVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAI 604

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            RI      + G KRAV V   I ++T++E + +    K  +    L   +  +  +
Sbjct: 605 MRI-----HRIGQKRAVQVRRFIVKDTVEERMQKVQACKQRMISGALTDDEVRSARI 656



 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 45/209 (21%), Gaps = 46/209 (22%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y    R                    N     ++  Q  +           +     K  
Sbjct: 330 YEALFRRSKVQFDKFVAQGSVLNNYANILELLLRLRQCCDHPFLVISRADTQ-----KYT 384

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L+ +           A  F   + R         +       ++E  +G          
Sbjct: 385 DLDEL-----------AQRFLDGVQRDSARRSAPPSQAYVEEVVEEIRQGATTECPICLE 433

Query: 118 SCGHGLNLQYGGNIL---VFFSLWWDLEEHQQMIER--------IGVTRQRQAGF----- 161
           S      L    + +      S W         + R        I +  Q +        
Sbjct: 434 SASDDPVLTPCAHRMCRECLLSSWRTPSGGPCPLCRSPITKSELITLPSQCRFQVDPENN 493

Query: 162 -KRAVFVYYLIAQNTIDELVLQRLRTKST 189
            K +  V  LI        +L+ L+ K  
Sbjct: 494 WKDSCKVIKLI-------KILEGLQEKRE 515


>gi|156062442|ref|XP_001597143.1| hypothetical protein SS1G_01337 [Sclerotinia sclerotiorum 1980]
 gi|154696673|gb|EDN96411.1| hypothetical protein SS1G_01337 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1130

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 65/207 (31%), Gaps = 21/207 (10%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             ++E       E+      ++K  K L   +G            +  +K      +    
Sbjct: 915  LKQEEVDK-DEESRLKSKESAKAGKDLSSYSGPHTKTIALIHDLLESKKES---ELNPNQ 970

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAH 115
                 +V   + S L  +Q A  +                          +  I ++   
Sbjct: 971  PPIKSVVFSGWTSHLDLIQFALQENNIPYTRLDGKMTRIARSNAMENFREDPTIVVILVS 1030

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             ++ G GLNL    N +      ++     Q I+R+      + G +R V     I  N+
Sbjct: 1031 ISAGGLGLNLTT-ANKVYVMEPQFNPAAEAQAIDRV-----HRLGQRREVQTVRFIMNNS 1084

Query: 176  IDELVLQRLRTKSTIQDLLLNALKKET 202
             +E +L+    K  +  L +++ K   
Sbjct: 1085 FEEKMLKIQDKKQKLASLSMDSQKGRL 1111


>gi|302679614|ref|XP_003029489.1| hypothetical protein SCHCODRAFT_111676 [Schizophyllum commune H4-8]
 gi|300103179|gb|EFI94586.1| hypothetical protein SCHCODRAFT_111676 [Schizophyllum commune H4-8]
          Length = 1059

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 23/144 (15%)

Query: 60  EVIIEKANAAPIIVAYHFNS---------DLARLQKAFPQGRTLD-KDPCTIQEWNEGKI 109
              I +     ++   H+ S         D  R +     G T   K    + ++N+   
Sbjct: 734 LKYIYEHTDEKVVFVSHYTSSLNILSAYCDRKRYKYNRLDGNTPPAKRQEYVNQFNKSTQ 793

Query: 110 P---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +        G G+NL  G + L+ F   W+        +     R  + G KR V 
Sbjct: 794 RSNFIFLLS----GVGINLT-GASRLILFDCDWNPS-----YDLQSAARCHRDGQKRPVH 843

Query: 167 VYYLIAQNTIDELVLQRLRTKSTI 190
           VY  +    IDE + QR  TK  +
Sbjct: 844 VYRFMTAGLIDEKIYQRQVTKLGL 867


>gi|291383503|ref|XP_002708309.1| PREDICTED: RAD26L hypothetical protein-like [Oryctolagus cuniculus]
          Length = 1644

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 497 KMKVLQQLLNHCRRNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 541

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 542 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 597

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 598 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQLYKQQLHCVVVGSENAK 650


>gi|158300708|ref|XP_552266.3| AGAP011966-PA [Anopheles gambiae str. PEST]
 gi|157013291|gb|EAL38818.3| AGAP011966-PA [Anopheles gambiae str. PEST]
          Length = 1082

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 49   KEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------- 96
             E    KI+    ++E+         I+   + S L  L     +               
Sbjct: 906  IERPSSKIEKTMQLLEEKIFHTDDKAIIVSQWTSMLDILATHLSERNVPFVSLTGKVQVK 965

Query: 97   -DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + ++N   GK  ++     + G GLNL  G N L+     W+ +      E    
Sbjct: 966  FRNDIVLDFNKPSGKSKVMLLSLTAGGVGLNL-VGANHLLLLDPHWNPQL-----EAQAQ 1019

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R  + G  + V+++  +   T+++ +      K  I D +L
Sbjct: 1020 DRVYRVGQTKPVYIWKFMCAETVEQKIHALQEHKLGIADGVL 1061


>gi|296424567|ref|XP_002841819.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638068|emb|CAZ86010.1| unnamed protein product [Tuber melanosporum]
          Length = 823

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 19/152 (12%)

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTI 101
            K   L+ ++     N   +++  +    L  L             F    +LD     +
Sbjct: 418 GKWIVLQKLLKFWHQNDDKVLIFSYSLQLLRILHKLFQSTEYNVCYFDGSMSLDDRTNVV 477

Query: 102 QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N      +      + G GLN+    N +V F   W+        +     R  + G
Sbjct: 478 AEFNSDPSQFVFLISTRAGGVGLNITA-ANKVVIFDPNWNPS-----YDLQAQDRAYRIG 531

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             R V V+ LI   TI+E+V  R   K    +
Sbjct: 532 QTRDVEVFRLILAGTIEEIVYARQIYKQQQAN 563


>gi|303278366|ref|XP_003058476.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459636|gb|EEH56931.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1251

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 32/160 (20%)

Query: 69   APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE-GKIPLLFAHPA 117
               IV   + S +   +    +             + +    ++ + +   + ++     
Sbjct: 1074 NKAIVFSQYTSMIDIAEWRLKKEKFVVAKLLGSMPVTQRAANLKAFRDDPNVSVILMSLK 1133

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE--------------------RIGVTRQR 157
            S G GLNLQ   N +     WW+     Q  +                       V R  
Sbjct: 1134 SGGEGLNLQA-ANYVFVLEPWWNPAVEMQARDAPAGPRGFILYFTHPSVSTFDRAVMRAH 1192

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +RAV       +NTI+E ++Q    K  + +  ++ 
Sbjct: 1193 RIGQRRAVTAVRFSTKNTIEERMMQLQEKKRLVFEGCMDG 1232


>gi|198455069|ref|XP_001359844.2| GA18248 [Drosophila pseudoobscura pseudoobscura]
 gi|198133079|gb|EAL28996.2| GA18248 [Drosophila pseudoobscura pseudoobscura]
          Length = 1506

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+   +              + +N     +  L      + G G
Sbjct: 1127 YEFEGDVGEFKGCWTNGKDYFRLDGSCSVEQREAMCKTFNNVANLRARLFLISTRAGGLG 1186

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1187 INLVA-ANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYE 1240

Query: 183  RLRTKSTIQDLLLNA 197
            R   K      +++ 
Sbjct: 1241 RQVAKQATAKRVIDE 1255


>gi|195054315|ref|XP_001994071.1| GH17632 [Drosophila grimshawi]
 gi|193895941|gb|EDV94807.1| GH17632 [Drosophila grimshawi]
          Length = 1050

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 52   HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
               K+  +  I++     +   +I+   + S L  L+    Q             +    
Sbjct: 879  PSTKMLKVLEILKTNILKSDDKVIIVSQWTSMLDILRDLLQQEKLAALSLNGSIPVKNRQ 938

Query: 99   CTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+N+ +    +L     + G GLNL  G N L+   L W+ +      E     R 
Sbjct: 939  NIVNEFNDARNSKRILLLSLTAGGVGLNL-IGANHLILLDLHWNPQL-----EAQAQDRI 992

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G K+ VF+Y ++   T+++ +      K  + + +L
Sbjct: 993  YRVGQKKDVFIYKIVCLETVEQRIKALQDRKMALAEGVL 1031



 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 4/63 (6%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA----VYYDEEKHWKEVHDEKIKAL 59
           Y   ++        + +++       ++  Q+           +EE      HDE     
Sbjct: 758 YKMHEKFSRMAGHNKEVKSHEILVLLLRLRQICCHPGLIDSMLEEEGSTSIGHDESDGYT 817

Query: 60  EVI 62
             I
Sbjct: 818 HEI 820


>gi|326332827|ref|ZP_08199085.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
 gi|325949385|gb|EGD41467.1| ATP-dependent RNA helicase [Nocardioidaceae bacterium Broad-1]
          Length = 735

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F     R         +  ++    +  N+ ++ ++     + G G+NLQ   N+++   
Sbjct: 584 FEERGIRYSTIRGDQTSKAREKAIDEFMNDPEVEIIVCSLTAAGVGVNLQAASNLVLAEL 643

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W D E+         + R  + G    V  + +IA  TID  + + + +K+ +    L+
Sbjct: 644 SWTDAEQT------QAIDRVHRIGQTEPVTAWRIIASQTIDTRIAELIDSKAGLAARALD 697

Query: 197 ALKKETIH 204
              +E   
Sbjct: 698 GSDEEVTD 705


>gi|302894367|ref|XP_003046064.1| hypothetical protein NECHADRAFT_91099 [Nectria haematococca mpVI
           77-13-4]
 gi|256726991|gb|EEU40351.1| hypothetical protein NECHADRAFT_91099 [Nectria haematococca mpVI
           77-13-4]
          Length = 884

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDP 98
             K +A+  I++   +   + ++V   + S L  ++                 +T  +D 
Sbjct: 711 SSKTEAMLQILKATVRKPGSKVVVFSQWTSFLNIIEVQLKAEGIGFTRIDGSMKTDKRDS 770

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 N+    ++ A  A C  GLNL    + ++    WW        IE   + R  +
Sbjct: 771 AIEALDNDPDTRVMLASLAVCSVGLNLVA-ADTVILSDSWWAPA-----IEDQAIDRVHR 824

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            G  R   V+ L+ + +++E VL   + K  +
Sbjct: 825 LGQTRETTVFRLVMEGSVEERVLNIQKEKREL 856



 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 8/52 (15%)

Query: 2   KQYHKFQRELYCDLQ--------GENIEAFNSASKTVKCLQLANGAVYYDEE 45
           ++Y     E    L+        G+     N   + ++  Q+ N      E 
Sbjct: 555 RKYDALLDEARGVLEAWQARSSSGQQGRFQNVLERLLRLRQVCNHWTLCKER 606


>gi|195157502|ref|XP_002019635.1| GL12501 [Drosophila persimilis]
 gi|194116226|gb|EDW38269.1| GL12501 [Drosophila persimilis]
          Length = 1502

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 75   YHFNSDLARLQKAFPQGRTLDK---------DPCTIQEWNEG---KIPLLFAHPASCGHG 122
            Y F  D+   +  +  G+   +              + +N     +  L      + G G
Sbjct: 1123 YEFEGDVGEFKGCWTNGKDYFRLDGSCSVEQREAMCKTFNNVANLRARLFLISTRAGGLG 1182

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL    N +V F + W+     Q I R+      + G  +  ++Y LIA  T+++ V +
Sbjct: 1183 INLVA-ANRVVIFDVSWNPSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYE 1236

Query: 183  RLRTKSTIQDLLLNA 197
            R   K      +++ 
Sbjct: 1237 RQVAKQATAKRVIDE 1251


>gi|195038055|ref|XP_001990476.1| GH18228 [Drosophila grimshawi]
 gi|193894672|gb|EDV93538.1| GH18228 [Drosophila grimshawi]
          Length = 1336

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 993  DYFRLDGSCSVEQRESMCKQFNNASNVRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1051

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1052 PSHDTQSIFRV-----YRFGQVKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1103


>gi|46137411|ref|XP_390397.1| hypothetical protein FG10221.1 [Gibberella zeae PH-1]
          Length = 1023

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 17/140 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGKIP-LL 112
             +N   ++V  H    L  L   F                      +  +N      + 
Sbjct: 561 WHSNGDKVLVFSHSVRLLRILHHLFTNTSYTVSYLDGSLSYEVRQEVVDTFNSDPTQFVF 620

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    N +V     W+        +     R  + G  R V V+ LI+
Sbjct: 621 LISTKAGGVGLNITS-ANKVVIIDPHWNPS-----YDLQAQDRAYRIGQTRDVEVFRLIS 674

Query: 173 QNTIDELVLQRLRTKSTIQD 192
             T++E+V  R   K    +
Sbjct: 675 LGTVEEIVYARQIYKQQQAN 694


>gi|291241069|ref|XP_002740438.1| PREDICTED: transcriptional regulator ATRX-like [Saccoglossus
            kowalevskii]
          Length = 1981

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      +          +N+    +  L      +   G+NL    N ++ F   W
Sbjct: 1658 IDYFRMDGSTSAQNRKAFQDLFNDPENLRARLFLISTKAGSLGINLVS-ANRVIIFDASW 1716

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +     Q I R+      + G  +A F+Y  +AQ T++E + +R  TK ++   +++  +
Sbjct: 1717 NPTHDVQSIFRV-----YRFGQTKACFIYRFLAQGTMEEKIYERQVTKQSLSRRVVDQFQ 1771

Query: 200  KE 201
             E
Sbjct: 1772 IE 1773


>gi|11870012|gb|AAG40586.1|AF217802_1 xnp/atr-x DNA helicase [Drosophila melanogaster]
          Length = 1311

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 962  DYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1020

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1021 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1072


>gi|21356675|ref|NP_651398.1| XNP, isoform B [Drosophila melanogaster]
 gi|24650076|ref|NP_733107.1| XNP, isoform A [Drosophila melanogaster]
 gi|17366808|sp|Q9GQN5|ATRX_DROME RecName: Full=Transcriptional regulator ATRX homolog; AltName:
            Full=ATP-dependent helicase XNP; AltName: Full=X-linked
            nuclear protein; AltName: Full=d-xnp; AltName: Full=dXNP
 gi|7301343|gb|AAF56471.1| XNP, isoform A [Drosophila melanogaster]
 gi|16198065|gb|AAL13821.1| LD28477p [Drosophila melanogaster]
 gi|23172300|gb|AAN14055.1| XNP, isoform B [Drosophila melanogaster]
 gi|220947590|gb|ACL86338.1| XNP-PA [synthetic construct]
          Length = 1311

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 962  DYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1020

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1021 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1072


>gi|156547006|ref|XP_001600490.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 843

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDP 98
           +   K K L+ ++ +   +   +++   F   L  L++                 + +  
Sbjct: 646 LKSGKFKKLDELLPQLKNDGHRVLIFSQFTMILDILEEYLTIRGHRYLRLDGQTPVMERQ 705

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I E+  + +I +      + G G+NL    + ++   + ++        ++    R  
Sbjct: 706 DLIDEYTEDSEIFIFLLSTRAGGLGINLTS-ADTVIIHDIDFNP-----YNDKQAGDRCH 759

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V +  L+ ++TI+E + +  + K  ++  +
Sbjct: 760 RVGQTKPVRIIRLLGKDTIEEGMYKITQEKLNLEQKI 796


>gi|96979867|ref|YP_611073.1| global transactivator [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983400|gb|ABF50340.1| global transactivator [Antheraea pernyi nucleopolyhedrovirus]
          Length = 495

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 35/223 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKE-------- 50
            Y   + E           A            +  Q+            +KE        
Sbjct: 264 VYDCLKSESQRAFDEAVAGAPRGMQAVLWLLCRLRQMCCHPALAKCADLFKEQAHIFEPG 323

Query: 51  VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKD 97
               K +    +++    +    +++   +   L  + +           +      ++ 
Sbjct: 324 YKSSKCRRALELVQRVLDSPDDKVVLVSQWVEFLHIVAEQLRALSVPVLLYTGRLRTEER 383

Query: 98  PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +N  +    +L       G GLNL  GGN LV     W+ +     +E     R
Sbjct: 384 AAVENRFNDADSPYRVLLMSIKCGGVGLNLT-GGNHLVLLEPHWNPQ-----VELQAQGR 437

Query: 156 QRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
             + G ++   VY ++   +N+++  +  R   K    D + +
Sbjct: 438 IHRLGQRKRAHVYKMLVDEENSVERYMKTRQDKKLEFVDKVFD 480


>gi|331088936|ref|ZP_08337845.1| hypothetical protein HMPREF1025_01428 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406534|gb|EGG86042.1| hypothetical protein HMPREF1025_01428 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 557

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 22/204 (10%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   ++ +   L+   +++ N  S T++  QL  G       +   ++   K    E I
Sbjct: 350 LYRDIKQGIVEQLED-ILQSVNPLSCTLRLRQLTGGLF----TEDNPKLDRIKDMLEEEI 404

Query: 63  IEKANAAPIIVAYHFNSDLARLQ--------KAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           I   N    I+   + S  +                  T ++    +  +  + +  L  
Sbjct: 405 I--PNGNKAIIFSQWESITSVYLEALRAYNPIYITGKVTPEERQKEVDRFQTDPECKLAI 462

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GL L    + + F    W+              R  + G    V V  ++A+
Sbjct: 463 GTIGAMGTGLTL-NKASYVFFVDKLWN-----SGENAQAEDRAHRIGTAGTVNVISMVAK 516

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
            ++DE V + L     + D +++ 
Sbjct: 517 GSVDEGVEEYLLENKELFDRVVDG 540


>gi|302784062|ref|XP_002973803.1| hypothetical protein SELMODRAFT_414152 [Selaginella moellendorffii]
 gi|300158135|gb|EFJ24758.1| hypothetical protein SELMODRAFT_414152 [Selaginella moellendorffii]
          Length = 338

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 63/175 (36%), Gaps = 17/175 (9%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------- 92
           +      +     K++AL   +E    +  +V   + + L  L+    +           
Sbjct: 162 FRVNVEEQWKESSKVEALLQQLETLRESKSVVFSQWTAFLDLLEIPLKRKNFRFVRLDGT 221

Query: 93  -TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +  K    ++++ N   + ++     + G GLNL    +       WW+    +Q I R
Sbjct: 222 LSQHKREQVLKDFSNIPDVAVMLISLKAGGVGLNLTA-ASNAFLMDPWWNPAVEEQAIMR 280

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           I      + G  + V +   I +++++E + Q    K  +    L   +  +  +
Sbjct: 281 I-----HRIGQTQNVSIKRFIVKDSVEERMQQVQARKQRLIAGALTDEEVRSARI 330


>gi|71029212|ref|XP_764249.1| DNA-dependent helicase [Theileria parva strain Muguga]
 gi|68351203|gb|EAN31966.1| DNA-dependent helicase, putative [Theileria parva]
          Length = 2026

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 8/156 (5%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
                   E  D K+   +V+I       +     +  +                    I+
Sbjct: 1011 QNNGVSVEAEDSKVYMHKVLIFTQFQLVLDELETYCINRGWKYMRLDGSTNKLIRELDIR 1070

Query: 103  EWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            E+N              + G G+NL    N +V +   W+       I+   + R  + G
Sbjct: 1071 EFNSNNSNYFVYLISTRAGGLGINLTA-ANHVVLYDEDWNP-----FIDLQAIDRAHRIG 1124

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             KR V ++ LI++ T++E +      K  +  L+L+
Sbjct: 1125 QKRNVHIWKLISEWTVEERMALIREKKLQLDKLILH 1160


>gi|221053540|ref|XP_002258144.1| SNF2-family protein [Plasmodium knowlesi strain H]
 gi|193807977|emb|CAQ38681.1| SNF2-family protein, putative [Plasmodium knowlesi strain H]
          Length = 1048

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             ++           +    I+ + N   I +      + G GLNL    N ++     W+
Sbjct: 917  NQIYVRLDGSTNTIERQKIIKRFSNNDNIFIFLLTTKAGGVGLNL-IAANHVILMDQDWN 975

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                    +R    R  + G K  V++Y L  +NTI+E +L+  + K  +   
Sbjct: 976  P-----HNDRQAEDRVHRLGQKNEVYIYRLCCKNTIEETILRCCKAKLHLDQA 1023


>gi|164662775|ref|XP_001732509.1| hypothetical protein MGL_0284 [Malassezia globosa CBS 7966]
 gi|159106412|gb|EDP45295.1| hypothetical protein MGL_0284 [Malassezia globosa CBS 7966]
          Length = 1129

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 64   EKANAAPIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
             + N    ++   +   L              ++     +   ++    +   + KI + 
Sbjct: 969  PRPNPIKSVIFSQWTRMLAKVKEALLHAGIGFRQLDGTMKREHREGAMSEFQQDPKIEVF 1028

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G         +W+    QQ ++RI      + G KR + +   I 
Sbjct: 1029 LVSLRAGGFGLNLVAGC-RAYLLDPYWNPAVEQQGLDRI-----HRLGQKRPIVMTKFIM 1082

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            Q +I+E +L+  + K  +   +     + T H
Sbjct: 1083 QRSIEEKLLELQKRKLELASQVGRRTDRRTDH 1114


>gi|195573901|ref|XP_002104930.1| GD18194 [Drosophila simulans]
 gi|194200857|gb|EDX14433.1| GD18194 [Drosophila simulans]
          Length = 1098

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 962  DYFRLDGSCSVEQREAMCKQFNNVTNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 1020

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 1021 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 1072


>gi|148273304|ref|YP_001222865.1| putative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831234|emb|CAN02189.1| putative DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 711

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALEV 61
           +   +   D         N  +   +  Q    LA            K V   K   +  
Sbjct: 505 RLVAQSELDEAKAQKTGENVFTMVRRIGQAKAVLAADYAAQLARSVGKVVFFAKHVDVMD 564

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
             E   A   + +     D +             +        N+ ++ ++     + G 
Sbjct: 565 QAEATFAKRELKSVSIRGDQS----------PAARQHAIDSFQNDPEVKVVVCSLTAAGV 614

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ   N+++    W   E+         + R  + G +  V  + +IA  TID  + 
Sbjct: 615 GLNLQAASNVVLAELSWTSAEQT------QAIDRVHRIGQEEPVTAWRIIAAQTIDAKIA 668

Query: 182 QRLRTKSTIQDLLLNA 197
           + + +K+ +    L+ 
Sbjct: 669 ELIDSKAGLAARALDG 684


>gi|303271765|ref|XP_003055244.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226463218|gb|EEH60496.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 481

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K    +Q +  G+  +L     +   GLNL    N ++    WW+       IE   + 
Sbjct: 281 PKRAAIVQAFRRGEATVLLVSLKAASLGLNL-NCANNVILVDPWWNAA-----IEDQAID 334

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G  + V V  LI   +++  +      K  I +  L  
Sbjct: 335 RCHRIGQTKEVKVTRLIVSESVELRIQALQERKRAIFNAALGD 377



 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 4/48 (8%), Positives = 10/48 (20%), Gaps = 5/48 (10%)

Query: 4   YHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEK 46
           Y   +                    +     +K  Q  +  +   E +
Sbjct: 94  YRALEEGTQALFDKYVKRGWKRNYMHILVLLLKLRQACDHPLLLKEAR 141


>gi|68490054|ref|XP_711148.1| hypothetical protein CaO19.6291 [Candida albicans SC5314]
 gi|68490091|ref|XP_711130.1| hypothetical protein CaO19.13670 [Candida albicans SC5314]
 gi|46432408|gb|EAK91891.1| hypothetical protein CaO19.13670 [Candida albicans SC5314]
 gi|46432427|gb|EAK91909.1| hypothetical protein CaO19.6291 [Candida albicans SC5314]
          Length = 972

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 46  KHWKEVHDEK---IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGR 92
              K +   K   +  +   I       +++   F   L  L++                
Sbjct: 807 GDEKFLDSGKVIELGKILQHIIDNKEEKVLIFSLFTQVLDILERVLSIFNYKFARLDGNT 866

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + +    I  +N + KI +      + G G+NL    N ++ F   ++        ++ 
Sbjct: 867 PVQERQDLIDLFNQDDKIHIFLISTKAGGVGINLVA-ANHVIMFDQSFNP-----HEDKQ 920

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G  + V VY LI+  TI++ +    R K  + + +
Sbjct: 921 AEDRAHRVGQTKEVKVYRLISDETIEKNIFSVARNKLELDEKI 963


>gi|326382680|ref|ZP_08204371.1| ATP-dependent DNA helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198799|gb|EGD55982.1| ATP-dependent DNA helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 571

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 24/208 (11%)

Query: 2   KQYHKFQRELY-CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HDEKIK 57
           + Y     +                 +   +  Q+ N       E            K+ 
Sbjct: 339 RIYDAILDDAENAGFGTGMARRGAILTALTRLKQVCNHPGLTGSEAVTAGDLSGRSGKLD 398

Query: 58  ALEVIIEKA--NAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEW 104
               I+E    N +P +V   +              L         G +  +    + ++
Sbjct: 399 VCTDIVESNLENDSPTVVFTQYRQTGELLAAHLGQVLGTDVPFLHGGLSRAERDRIVDDY 458

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G    +L A   + G GL L    + +V +  WW+       +E     R  + G  R
Sbjct: 459 QAGAGCGVLIASLKAAGTGLTLTRAAD-VVHYDRWWNPA-----VEAQATDRVHRIGQDR 512

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            V V  L    T++E +      KS + 
Sbjct: 513 IVTVTTLTTAGTLEEHIAAMHDRKSALD 540


>gi|299116533|emb|CBN74721.1| SNF2-related domain-containing protein [Ectocarpus siliculosus]
          Length = 1075

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 53  DEKIKALEVII----EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
             K+  LE ++     +     ++VA +F S L                   G T +   
Sbjct: 756 SGKMTVLEALLKAVRREYPGDKVVVASNFTSALDVLETLAERNAWGFLRLDGGTTTNARQ 815

Query: 99  CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +  +N      + L +    + G GLNL  G N +V F   W+        +   + R
Sbjct: 816 NLVDRFNRASPEDLFLFYLSTKAGGVGLNL-VGANRIVLFDSDWNPAT-----DDQAMAR 869

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V +Y L++  T++E + QR   K  + DL+ ++
Sbjct: 870 VWRLGQTKEVSMYRLLSTGTLEESIFQRQIFKGALYDLIHDS 911


>gi|325095596|gb|EGC48906.1| transcription factor [Ajellomyces capsulatus H88]
          Length = 929

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 746 NEIDINPETTSSKIQALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARID 805

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 806 GKMSSAKRDAAMNALSNDSNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 859

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 860 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTLM 902


>gi|316975021|gb|EFV58483.1| putative immunoglobulin domain protein [Trichinella spiralis]
          Length = 858

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 77  FNSDLARLQKAFPQGRTLDK-DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNIL 132
           FN  +  +      G T         +++N+    +  +      +   G+NL  G N +
Sbjct: 497 FNYWVPGIDYIRMDGSTNASTRERLAKKFNDETNRRCRVFLLSTKAGSLGINL-IGANRV 555

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V F   W+        +   + R  + G  + V++Y LIA+ T++E + QR   K ++  
Sbjct: 556 VVFDANWNPSH-----DLQAMFRVYRLGQCKPVYIYRLIAKGTMEETIYQRQVVKQSLSC 610

Query: 193 LLLNA 197
            +++ 
Sbjct: 611 RVIDE 615


>gi|224001656|ref|XP_002290500.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973922|gb|EED92252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1653

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 95   DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             K    +  +N    P  +      + G GLNL    + ++ F   W+      M++   
Sbjct: 1135 RKREKRMYMFNAPDSPYFIFLLSTRAGGLGLNL-ATADTVIIFDSDWNP-----MMDLQA 1188

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G ++ V V+ +I Q+ ++E +L R   K  + +L++ A K
Sbjct: 1189 QDRAHRIGQRKDVRVFRIITQSPVEEKILSRATEKLHMNELVVEAGK 1235


>gi|170588595|ref|XP_001899059.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158593272|gb|EDP31867.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1207

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              F    T  +    I  +N +  I L      +   G+NL    + ++ F   W+   
Sbjct: 852 YYRFDGSTTATEREKLINRFNQDPNILLFLISTRAGSLGINLVS-ASRVIIFDASWNP-- 908

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-------LN 196
                +   V R  + G KR  +VY LI  N+++  +  R   K+ +Q  +       ++
Sbjct: 909 ---CHDAQAVCRIYRYGQKRRTYVYRLIMDNSMERAIFSRQIGKNGLQQRVVDDKQMDID 965

Query: 197 ALKKETIHV 205
             K+E   +
Sbjct: 966 ITKREMEQL 974


>gi|253573375|ref|ZP_04850718.1| helicase protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846903|gb|EES74908.1| helicase protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 592

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDP 98
           +   + K +    +I + N   +IV   +            +       +  G    K  
Sbjct: 375 QIKANSKAEKAMELIREMND-KVIVFTEYRATQEYLLKYFRERGMTAVPYRGGMNRGKKD 433

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +  G+  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      +
Sbjct: 434 WMMDLFR-GRAQVMIAT-EAGGEGINLQF-CHQMINFDLPWNPMRVEQRIGRV-----HR 485

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G    V +Y L  + TI+E +L  L  K  + ++++  L
Sbjct: 486 LGQTNDVHIYNLSTKGTIEEHILHLLHEKINMFEMVIGHL 525


>gi|255072471|ref|XP_002499910.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226515172|gb|ACO61168.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1201

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             D           + L +    + ++  G+  +L     +   GLNL    + ++    W
Sbjct: 1023 EDAGHAVLRLDGTQRLSQRARVVAKFRRGEAGVLLVSLKAASLGLNL-NCASRVILTDPW 1081

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+       IE   + R  + G  R V V  L+ ++T++  +      K  I    L 
Sbjct: 1082 WNAA-----IEDQAIDRCHRIGQTREVKVTRLLIRDTVENRIRDLQERKKAIVAAALG 1134



 Score = 38.6 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 5/54 (9%)

Query: 4   YHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           Y   +             G      +     +K  Q  +  +   E +   E  
Sbjct: 744 YRALEERTVTMFDTYVKRGWKANYMHILVLLLKLRQACDHPLLLKEAREQNEPD 797


>gi|27502706|gb|AAH42442.1| Smarcad1 protein [Mus musculus]
          Length = 836

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              +   +          K  Q     +   +      +   K +AL  I+ +       
Sbjct: 627 LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRALGCILSELKQKGDR 682

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 683 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 742

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 743 GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 796

Query: 180 VLQRLRTKSTIQDLL 194
           +L+  + K  ++  +
Sbjct: 797 MLKINQQKLKLEQDM 811


>gi|322500409|emb|CBZ35486.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 736

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
           ++++  + +   A  +I+   F S +                     +L      I+++ 
Sbjct: 510 LRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRNAVIRQFQ 569

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I ++ A   + G GLNL    N +V    WW+       IE   V R  + G K+ 
Sbjct: 570 TSEHIKIVLASKTATGVGLNLTA-ANHVVVVDPWWNPA-----IEEQAVHRCYRIGQKKP 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+V   I  +TI++   +  + K    D +L A
Sbjct: 624 VYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|116191565|ref|XP_001221595.1| hypothetical protein CHGG_05500 [Chaetomium globosum CBS 148.51]
 gi|88181413|gb|EAQ88881.1| hypothetical protein CHGG_05500 [Chaetomium globosum CBS 148.51]
          Length = 982

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 17/150 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
           I  L  +  +      +V   F S L                     T       ++E+ 
Sbjct: 818 INQLRELRRETPTIKSVVFSQFTSFLSLLEPALARANMHFVRLDGSMTQKARAAVLEEFK 877

Query: 106 EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E K   +L     + G GLNL      +     WW        IE   + R  + G +  
Sbjct: 878 ESKKFTILLLSLKAGGVGLNLTS-AKRVYMMDPWWSFA-----IEAQAIDRVHRMGQEDE 931

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V VY  I ++++++ +L+    K  +   L
Sbjct: 932 VKVYRFIVKDSVEQRMLKVQDRKKFLATSL 961



 Score = 35.1 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 38/152 (25%), Gaps = 6/152 (3%)

Query: 6   KFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           K +R    +++   +     +  ++ ++  Q     +     +   E  +    A     
Sbjct: 624 KAKRTFLANVEAGTVMKAFTSIFAQVLRLRQSCCHPILVRNREIAAEEEEAGAAADAAAG 683

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
              +     +   F +           G  +      I++    + P+    P       
Sbjct: 684 LADDMDLHSLIERFTATTDDTTDTNAFGAHVLGQ---IRDEAINECPICAEEPMVDQTVT 740

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +               +H + + R    R
Sbjct: 741 GCWHSACKNCLLDYIKHQSDHHE-VPRCFHCR 771


>gi|255726892|ref|XP_002548372.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240134296|gb|EER33851.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 1066

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 47   HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTL 94
              K +   KI  L+ I++K       I++   F   L  L+K              G  +
Sbjct: 884  DEKYLDSGKIIELKKILDKTTKKGEKILIFSLFTQVLDILEKVLSLFDLKFVRLDGGTKV 943

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+   TI  +N +  IP+      + G G+NL    N ++ F   ++  +     ++   
Sbjct: 944  DERQDTIDIFNEDSTIPIFLLSTKAGGFGINLVA-ANNVIIFDQSFNPHD-----DKQAE 997

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G K+ V V+ +I   T+++ +L     K  +   +
Sbjct: 998  DRAHRVGQKKEVTVFKMITNKTVEKNMLLLAENKLALDKKI 1038


>gi|221505782|gb|EEE31427.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1345

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 57/228 (25%)

Query: 28  KTVKCLQLANGAVYYD---------------------------EEKHWKEVHDEKIKALE 60
             ++  +  N    +                            ++         KI A++
Sbjct: 411 LFMQLRKCCNHPALFHLGASCTSAVSVGTRDSEETRSDSVAEGDDAESLLRDSSKIAAVD 470

Query: 61  VII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGK 108
            I+         ++V     + L  ++    +               +    I  ++   
Sbjct: 471 AILSFYLPRQEKVVVFSFSTAMLDLVEDYLDEKGIVSARLDGRMGDGERRAAIAAFSAQP 530

Query: 109 IP---------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                            +      + G+GL L +  ++ VF        +    +ER  +
Sbjct: 531 SENARQSPQGSHEACAAVFLVSVRAGGYGLTLSHCASVCVFLEGG---GDGNPQVERQAI 587

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V V  LI ++T++E++  R R K  +   +L+  + +
Sbjct: 588 ARLYRQGQTKKVKVIRLITRSTVEEVMYWRGRQKLKLVADVLSEDEND 635


>gi|47209419|emb|CAF93109.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1232

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 69/270 (25%), Gaps = 73/270 (27%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------------- 42
           K Y  F  + +   Q E        +  +   +  N    +                   
Sbjct: 246 KYYKAFLLKDHGAFQNEQRNKTRLLNILINLRKCVNHPYMFEGETRWELPGPVEATVTPV 305

Query: 43  ----------------DEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLA 82
                            E          K+  L+ ++     +     +++       L 
Sbjct: 306 KMRMFCDVFLGVEPEPFEMGEHLIEASGKLSLLDNLLTFLLKEQVGHRVLLFSQMTRMLD 365

Query: 83  RLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
            +Q                   ++    ++ ++   I        + G GLNL    + +
Sbjct: 366 IVQDYMEYRGYSYERLDGSIRGEERNLAVKNFSSNDIFAFLLSTKAGGVGLNLTA-ADTV 424

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQ-----------------------AGFKRAVFVYY 169
           +F    ++     Q   R     Q +                           R V V  
Sbjct: 425 IFIDSDFNPHNDLQAAARCHRIGQDRWCSGTTVVTTWAGPQPDVLTITTVTHSRPVKVIR 484

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           LI ++T++E++  R  +K  +   ++   +
Sbjct: 485 LIGRDTVEEIMYCRAASKLNLTKTVMEDGR 514


>gi|116196848|ref|XP_001224236.1| hypothetical protein CHGG_05022 [Chaetomium globosum CBS 148.51]
 gi|88180935|gb|EAQ88403.1| hypothetical protein CHGG_05022 [Chaetomium globosum CBS 148.51]
          Length = 819

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
            +   +EE    E    K +AL  I++   K + + +I+   + S      +      + 
Sbjct: 652 HSAEDEEESLDPETKSSKTEALLKILQATLKNDGSKVIIFSQWTSMKYVQTRCRYSRIST 711

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                           ++ A  + C  GLNL    + +V    WW        IE   V 
Sbjct: 712 T----------TPATRIMPASLSVCSVGLNLVS-ADTVVLADSWWAPA-----IEDQAVD 755

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G  R   V+ L+ + T++E VL     K  + +   
Sbjct: 756 RVHRLGQTRPTTVWRLVMEGTVEERVLDIQGEKRELVNKAF 796


>gi|328354133|emb|CCA40530.1| hypothetical protein PP7435_Chr4-0362 [Pichia pastoris CBS 7435]
          Length = 689

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------- 86
            +      E++        K + L  I+++  A   I+   F   LA L+          
Sbjct: 533 CSQCKSLSEQQTPPLERSAKSERLLEILKRDPARKTIIFSQFTKLLATLKPFLTKNGFKC 592

Query: 87  --AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                      +D    +     +  +L         GLNL    N +V +  WW+ +  
Sbjct: 593 VLYEGTMTRAMRDTTLKEFNENPETTVLLCSLKCGAIGLNLT-IANRVVIYDPWWNPQ-- 649

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
              +E   + R  + G  + V VY LI +++++E +
Sbjct: 650 ---VEDQAIDRVYRFGQTKEVDVYRLIIKDSVEENI 682


>gi|302408887|ref|XP_003002278.1| DNA repair protein RAD5 [Verticillium albo-atrum VaMs.102]
 gi|261359199|gb|EEY21627.1| DNA repair protein RAD5 [Verticillium albo-atrum VaMs.102]
          Length = 1130

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN 105
           I AL  +  +      +V   F S L  ++ A  +                    + E+ 
Sbjct: 619 ISALRELRREHPRMKSVVFSQFTSFLTLIEPALAKSNIKFLRLDGTMAQKARAAVLNEFQ 678

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              +  +L     + G GLNL      +     WW        IE   + R  + G +  
Sbjct: 679 EANQFTILLLSLRAGGVGLNLTT-AKRVYMMDPWWSFA-----IEAQAIDRVHRMGQEDE 732

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V VY  I + +++E +L+    K  +   L
Sbjct: 733 VKVYRFIVEQSVEERMLKVQERKKFLATSL 762


>gi|158290917|ref|XP_312449.4| AGAP002490-PA [Anopheles gambiae str. PEST]
 gi|157018127|gb|EAA08205.4| AGAP002490-PA [Anopheles gambiae str. PEST]
          Length = 881

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           L           ++D      + +N+    +  L      + G G+NL    N +V F +
Sbjct: 481 LGLDYFRLDGSTSIDNRNDACKVFNDESNTRARLFLISTRAGGLGINLVA-ANRVVIFDV 539

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   + R  + G  +  ++Y  IA  T++E + +R  TK  I   +++ 
Sbjct: 540 SWNPSH-----DIQSIFRVYRFGQSKPCYIYRFIAMGTMEEKIYERQVTKQAISKRVIDE 594


>gi|145603372|ref|XP_369370.2| hypothetical protein MGG_06094 [Magnaporthe oryzae 70-15]
 gi|145011615|gb|EDJ96271.1| hypothetical protein MGG_06094 [Magnaporthe oryzae 70-15]
          Length = 763

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------- 94
             +E       D  +K L+  + K +++ +I+   + S L  +Q+   +  T        
Sbjct: 582 DMDESAGSSKTDALLKILDGTLLKNSSSKVIIFSQWTSFLNVIQRQLEEHTTYGYTRIDG 641

Query: 95  -----DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 +D    +   +    +L A    C  GLNL    + ++    WW        IE
Sbjct: 642 TMKPVARDDAMRKLETDPDTRILLASLGVCSVGLNLVT-ADTVILADSWWAPA-----IE 695

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + R  + G  R   V+ L+ ++T++E VL     K  +         K+T
Sbjct: 696 DQAIDRVHRLGQTRPTTVWRLVMEDTVEERVLDVQSEKRDLVSKAFQEKGKKT 748


>gi|289679708|ref|ZP_06500598.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae FF5]
          Length = 97

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +  WW+        E     R  + G  + VFVY +IA+ T++E + +  R KS
Sbjct: 5   ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMIARGTVEEKIQRLQREKS 59

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 60  ALASGVLDG 68


>gi|196003014|ref|XP_002111374.1| hypothetical protein TRIADDRAFT_55311 [Trichoplax adhaerens]
 gi|190585273|gb|EDV25341.1| hypothetical protein TRIADDRAFT_55311 [Trichoplax adhaerens]
          Length = 954

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                      +    I  +N      + L      +   G+NL    N +V +   W+ 
Sbjct: 758 YFRIDGSVPSHERSRLIDLFNSPDNNSVWLFLISTRAGNLGINLVA-ANRVVIYDSAWNP 816

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +     R  + G K+  ++Y L+  NT++ ++ +R   K  +   +++ 
Sbjct: 817 -----CYDNQAAFRIYRYGQKKPCYIYRLVGSNTMEHVIYKRQIRKQGLSRRIIDE 867


>gi|297742194|emb|CBI33981.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNIL 132
           YHF+  + +        R + +   +I  +N+   ++ +L A   +C  G++L  G + +
Sbjct: 382 YHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGISL-VGASRV 440

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +   + W+       +ER  ++R  + G ++ V++Y+L+   T++E    R   K  + +
Sbjct: 441 ILLDVVWNPS-----VERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSE 495

Query: 193 LLLNALKK 200
           L+ ++  K
Sbjct: 496 LVFSSKDK 503


>gi|10438729|dbj|BAB15325.1| unnamed protein product [Homo sapiens]
          Length = 757

 Score = 76.7 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTI 101
            K+  ++ ++ K  A    +++       L  L+    Q R   +              I
Sbjct: 6   GKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAI 65

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             + +      +      + G G+NL    +  + F   W+ +      +     R  + 
Sbjct: 66  DRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQN-----DLQAQARCHRI 119

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 120 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 162


>gi|311899146|dbj|BAJ31554.1| hypothetical protein KSE_57820 [Kitasatospora setae KM-6054]
          Length = 613

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 39/232 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-------- 53
           + Y   +       +    +        ++ L  A       E     E           
Sbjct: 347 EIYEALKGNFTARAEASRGDFDALGRAMLRLLMAATSPALLVEGGSRYEPLSYRVPPLQP 406

Query: 54  -------------------EKIKALEVIIEKAN--AAPIIVAYHFN-------SDLARLQ 85
                               K      I+          +V   F          LA  +
Sbjct: 407 EPGDSLYSLLQNLPSYELSPKYHETLEIVAANAALGRKTLVWTTFVRSLTTLQEMLAPYR 466

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            A   G T D+     +   +    +L ++PA+ G G++L    +  V+    +      
Sbjct: 467 PAVVHGGTADRAEELRRFREDPDCLVLLSNPATLGEGISLHQVCHDAVYVDRDFMAGRFL 526

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q ++RI           R   V  L A  TIDE+V  RL+ K      +L+ 
Sbjct: 527 QSLDRIHRLGLAPGTETR---VTILAATGTIDEVVALRLQQKLDFMGRILDD 575


>gi|124481796|gb|AAI33116.1| LOC553504 protein [Danio rerio]
          Length = 1105

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 31  KCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +C Q A    +  +Y  + K  +++ +  I   + ++  + +  ++           L+ 
Sbjct: 424 RCKQAAFEAMSDPMYSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMAEGLEY 483

Query: 87  AFPQGRTLDKDP-CTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
               G T  KD    ++E+N  + + L      + G GLN   G N++V F   W+    
Sbjct: 484 HRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNF-IGANVVVLFDPTWNPAND 542

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q I+R+      + G  R V V+ LI+  T++E++  R   K  +Q  ++      
Sbjct: 543 LQAIDRV-----YRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENAR 594


>gi|302667167|ref|XP_003025174.1| hypothetical protein TRV_00656 [Trichophyton verrucosum HKI 0517]
 gi|291189264|gb|EFE44563.1| hypothetical protein TRV_00656 [Trichophyton verrucosum HKI 0517]
          Length = 1020

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 620 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFL 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 680 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 733

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 734 GTIEEIVYARQIYKQQQAN 752


>gi|146091759|ref|XP_001470113.1| DNA repair protein [Leishmania infantum]
 gi|134084907|emb|CAM69305.1| putative DNA repair protein [Leishmania infantum JPCM5]
          Length = 736

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
           ++++  + +   A  +I+   F S +                     +L      I+++ 
Sbjct: 510 LRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRNAVIRQFQ 569

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I ++ A   + G GLNL    N +V    WW+       IE   V R  + G K+ 
Sbjct: 570 TSEHIKIVLASKTATGVGLNLTA-ANHVVVVDPWWNPA-----IEEQAVHRCYRIGQKKP 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+V   I  +TI++   +  + K    D +L A
Sbjct: 624 VYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|228904537|ref|ZP_04068620.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
 gi|228855101|gb|EEM99677.1| hypothetical protein bthur0014_56750 [Bacillus thuringiensis IBL
           4222]
          Length = 413

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 20/203 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 229 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGSY------------NEHKLQYIKD 276

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE  N   II        +A +        T++ D   +  + +    +      +   
Sbjct: 277 LIESTNDRIIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGAM 336

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ    I+ F             +      R  + G KR  F YYL+   +I+  +L
Sbjct: 337 GLNLQKANKIVYFTLTDKS------ELFEQSKKRTHRIGQKRPCFYYYLLTDGSIEWRML 390

Query: 182 QRLRTKSTIQDLLLNALKKETIH 204
             L+ +    D L    K+E ++
Sbjct: 391 DVLKERRDYTDALFE--KEEDVN 411


>gi|94264307|ref|ZP_01288100.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
 gi|93455273|gb|EAT05483.1| SNF2-related:Helicase-like:SWIM Zn-finger:DEAD/DEAH box
           helicase-like [delta proteobacterium MLMS-1]
          Length = 1022

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 32  CLQ--LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF- 88
             Q  +A  A    +++       +++  +   +   +    +V   +      +++   
Sbjct: 585 LQQARMACDAAGLVDKESVGSPKIDELAQILDEVCLQSGLKAVVFSQWELMTRMVEQRLR 644

Query: 89  ---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      G    K    ++ +      L+F    + G GLNLQ   ++LV   + W
Sbjct: 645 RLGIGYVRLHGGVPTAKRGDLLERFRSDDSVLVFLSTDAGGVGLNLQS-ASVLVNLDVPW 703

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +    +Q   RI      + G    V +  ++A N+ +E VL  ++ K  + D ++    
Sbjct: 704 NPAVLEQRNGRI-----HRLGQPNKVQIITMVAANSYEEQVLSLVQNKQALFDQVIAEDA 758

Query: 200 KETI 203
            E +
Sbjct: 759 SEDV 762


>gi|330924634|ref|XP_003300716.1| hypothetical protein PTT_12049 [Pyrenophora teres f. teres 0-1]
 gi|311325001|gb|EFQ91184.1| hypothetical protein PTT_12049 [Pyrenophora teres f. teres 0-1]
          Length = 1117

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                ++D        +  I ++     + G GLNL    N +      ++     Q ++R
Sbjct: 996  MTRENRDKSMQALREDSSIRVMLVSIGAGGLGLNLTT-ANKVFMMEPQFNPAAEAQAVDR 1054

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +      + G  R V +   I   + +E +L+    K  + D+ ++  +K
Sbjct: 1055 V-----HRLGQDREVTIKRFIMNGSFEEKMLELQNKKRDLADMTMSRERK 1099


>gi|156550927|ref|XP_001603100.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked
            helicase II) [Nasonia vitripennis]
          Length = 1283

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            L           + +      + +N     +  L      + G G+NL    N ++ F  
Sbjct: 895  LGLDYFRLDGSTSAENRSAWCKIFNNPKNTRARLFLISTRAGGLGINLTA-ANRVIIFDA 953

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q I RI      + G K+  +VY  +A  T++E +  R  TK ++   +++ 
Sbjct: 954  SWNPSHDVQSIFRI-----YRFGQKKPCYVYRFLAAGTMEEKIYNRQVTKLSLACRVVDE 1008


>gi|118089602|ref|XP_420305.2| PREDICTED: similar to putative DNA dependent ATPase and helicase
            [Gallus gallus]
          Length = 2533

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 24/200 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-----I 63
            ++   D   E +E         + L++A      +E      V  + + +L++I     +
Sbjct: 2045 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2098

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKI---PLLFAHP 116
                         +  +    +           T        +E+N+       L     
Sbjct: 2099 ANREKTDKEKPPIYKGEGKWFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIIST 2158

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   G+NL    N ++ F   W+        +   + R  + G  + VFVY  +AQ T+
Sbjct: 2159 KAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQSKPVFVYRFLAQGTM 2212

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            ++ +  R  TK ++   +++
Sbjct: 2213 EDKIYDRQVTKQSLSFRVVD 2232


>gi|39977089|ref|XP_369932.1| hypothetical protein MGG_06447 [Magnaporthe oryzae 70-15]
 gi|145016135|gb|EDK00625.1| hypothetical protein MGG_06447 [Magnaporthe oryzae 70-15]
          Length = 1592

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 18/161 (11%)

Query: 48   WKEVHDEKIKALEVIIEKAN--AAPIIVAY----------HFNSDLARLQKAFPQGRTLD 95
                H  KI  L  I+++A      +++            +      R          + 
Sbjct: 934  HNLDHSYKITVLTRILDEAKRVGDKVLIFSSRIPVLNFLENLMKMQKRPYSRLDGETKIS 993

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                ++  +N     +      + G GLN+Q G N +V     W     Q       + R
Sbjct: 994  TRQASVANFNANNDEVYLISTNAGGVGLNIQ-GANRVVMMDFQWQPANEQ-----QAIGR 1047

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  + V+VY+LI   T +  +      K+ +   +++
Sbjct: 1048 AYRIGQTKPVYVYWLIVGGTYEPKLHAAAIFKTQLASRVVD 1088


>gi|154340309|ref|XP_001566111.1| DNA repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063430|emb|CAM39609.1| putative DNA repair protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 736

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
           ++++  + +   A  +I+   F S +                     +L      I+++ 
Sbjct: 510 LRSIHDMQKNHPADKMIIFSQFTSFMDVISVSLDRYNIAFLRIDGTMSLSNRNAVIRQFQ 569

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I ++ A   + G GLNL    N ++    WW+       IE   V R  + G K+ 
Sbjct: 570 TSEHIKIVLASKTATGVGLNLTA-ANHVIVVDPWWNPA-----IEEQAVHRCYRIGQKKP 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+V   I  +TI++   +  + K    D +L A
Sbjct: 624 VYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|2443887|gb|AAB71480.1| Similar to transcription factor gb|Z46606|1658307 and others
            [Arabidopsis thaliana]
          Length = 1272

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE- 106
                +  K      IV   +   L  L+ +        +              +Q++N  
Sbjct: 1120 MSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL 1179

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             ++ ++     +   GLN+    + ++   LWW+        E   + R  + G  R V 
Sbjct: 1180 PEVTVMIMSLKAASLGLNMVAACH-VLMLDLWWNPTT-----EDQAIDRAHRIGQTRPVT 1233

Query: 167  VYYLIAQNTIDELVLQRL 184
            V     ++T+++ +L   
Sbjct: 1234 VVRFTVKDTVEDRILALQ 1251


>gi|300175571|emb|CBK20882.2| unnamed protein product [Blastocystis hominis]
          Length = 571

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 46/233 (19%)

Query: 2   KQYH---KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE---- 54
           + Y    + QR    +  G+      + +       L        E              
Sbjct: 259 QLYEKLIELQRGSLAEHGGD--AGQLTLTFLHALRLLCVHPSLIRESVQSTSALSSLLPI 316

Query: 55  ----------------KIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR--- 92
                           K++A+E+++          I+V   +   L  L       +   
Sbjct: 317 LDADDQNQRDFTSQSVKMEAVELLLASILSHTDEQILVISSYTQILDYLGSFCDSKKWGY 376

Query: 93  -------TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                   + +    +  +N       L      + G GLN+  G + +V     W+   
Sbjct: 377 FRLDGQTDVAQRQSLVNSFNHRYTSKRLFILSARAGGVGLNIT-GASRVVMLEPAWNPA- 434

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               I+   + R  + G  R VFVY L    +I+E++LQR   K  I D+ ++
Sbjct: 435 ----IDLQSIARAWRFGQTRRVFVYRLFVAGSIEEVMLQRQLLKKAIADVAVD 483


>gi|209945960|gb|ACI97211.1| okra [Drosophila melanogaster]
          Length = 168

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIER 150
            ++ K    +  +N+ +        +S   G  L   G N L  F   W+        + 
Sbjct: 76  MSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAN-----DE 130

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G K+  ++Y L+A  +I+E   QR   K 
Sbjct: 131 QAMARVWRDGQKKPCYIYRLVASGSIEEKXXQRQTHKK 168


>gi|162455821|ref|YP_001618188.1| SNF2 family helicase [Sorangium cellulosum 'So ce 56']
 gi|161166403|emb|CAN97708.1| helicase, Snf2 family [Sorangium cellulosum 'So ce 56']
          Length = 944

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 34/212 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              ++E    L              +K  Q  N       +   ++    K+  LE +I 
Sbjct: 489 RALRKEELDRL----------MMMLMKARQACN--ALELCDPRRRKKASPKLDELEALIA 536

Query: 65  K---ANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           +        +IV   +   L                       D+ P  +  + +     
Sbjct: 537 EVTAQPRNKVIVFSEWVGMLELASERLDRLRVGHAMLHGDVPTDRRPALLDRFRDDPAVR 596

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G GLNLQ   + +V   L W+              R  + G  R+V V YL 
Sbjct: 597 VLLSTDAGGVGLNLQA-ASYVVHLDLPWNPARLD-----QRTARAHRLGQGRSVSVTYLC 650

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           A+  I+  +   L  K  +   L+ +L+ ++ 
Sbjct: 651 AEEGIERGIEGILSEKRKV---LVASLRADST 679


>gi|115450111|ref|NP_001048656.1| Os03g0101700 [Oryza sativa Japonica Group]
 gi|108705687|gb|ABF93482.1| SNF2P, putative, expressed [Oryza sativa Japonica Group]
 gi|113547127|dbj|BAF10570.1| Os03g0101700 [Oryza sativa Japonica Group]
 gi|215694686|dbj|BAG89877.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 79/230 (34%), Gaps = 40/230 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEV 51
           K Y    ++EL       G      +  +  ++  + ++    +         E      
Sbjct: 256 KLYLSVLRKELQTLLTFTGGLSRHQSLQNIVIQLRKASSHPYLFSGIEPEPYVEGEHLVQ 315

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++I++K +     +++       L  LQ      +   +             
Sbjct: 316 ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGSVRAEERFA 375

Query: 98  ----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        +++ N+    +      + G GLNL  G + ++F+   W+ +     
Sbjct: 376 AIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA---- 430

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + R  + G    V    L++Q TI+E++++R   K  +   ++  
Sbjct: 431 -DKQALQRAHRIGQLNNVLSINLVSQRTIEEVIMRRAERKLKLSHSVIGE 479


>gi|327300653|ref|XP_003235019.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
 gi|326462371|gb|EGD87824.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
          Length = 920

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 17/141 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
               +V   + S L  ++               +  +  +D    +   + +  ++ A  
Sbjct: 765 GTKTVVFSQWTSFLDLIEPHLVLYNINFARIDGKMNSAKRDAAMGKFSRDSECTVMLASL 824

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             C  GLNL    N +V    WW        IE   V R  + G  R   ++ L+ +N+I
Sbjct: 825 NVCSVGLNLVA-ANQVVLADSWWAPA-----IEDQAVDRVYRLGQTRPTTIWRLVMENSI 878

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ VL   + K  +       
Sbjct: 879 EDRVLDIQKEKRELMSTAFQE 899



 Score = 34.7 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 4   YHKFQREL------YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           Y  F+ E       +   +G+     +     ++  Q+ N      + 
Sbjct: 593 YEMFEAEAKGVFMDFQSNKGKKTTYSHVLEVLLRLRQVCNHWKLCHDR 640


>gi|325116690|emb|CBZ52243.1| hypothetical protein NCLIV_020290 [Neospora caninum Liverpool]
          Length = 677

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 20/154 (12%)

Query: 53  DEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPC 99
             K++ LE ++     ++   +++  +F S L  ++                  +     
Sbjct: 520 HSKMQFLENLLLSIRSSSDDKVVIVSNFTSTLDNIEIFMRAKGYSFLRLDGSTAVRDRTG 579

Query: 100 TIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++ +NE  +         + G GLNL  G N L+     W+    QQ + RI      +
Sbjct: 580 LVKTFNESEQCFAFLLSSKAGGVGLNL-IGANRLILLDPDWNPANDQQALARIW-----R 633

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            G    VF+Y L+   TI+E +LQR   K+T+  
Sbjct: 634 PGQVNPVFIYRLVGARTIEEKILQRQAYKTTLAQ 667


>gi|330800474|ref|XP_003288261.1| hypothetical protein DICPUDRAFT_97966 [Dictyostelium purpureum]
 gi|325081717|gb|EGC35223.1| hypothetical protein DICPUDRAFT_97966 [Dictyostelium purpureum]
          Length = 1718

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 97   DPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I  +N  +  + L      +   G NL  GG  ++   L W+      + +R  V 
Sbjct: 1505 RQRMINRFNEEDNHLKLFIISTKAGSLGTNLT-GGTRVIILDLSWNP-----VHDRQAVY 1558

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            R  + G K+ V+VY L+   T +E +  R+  K  +    ++A   + 
Sbjct: 1559 RCYRIGQKKTVYVYTLVMAGTGEERIYNRMIHKQALAKRAVDAENPKI 1606


>gi|148666356|gb|EDK98772.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1`,
           isoform CRA_b [Mus musculus]
          Length = 866

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAP 70
              +   +          K  Q     +   +      +   K +AL  I+ +       
Sbjct: 657 LIFEDMEVMTDFELHVLCKQYQ----HINSYQLDMDLILDSGKFRALGCILSELKQKGDR 712

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   F   L  L+      +             +    I E+N +  I +      + 
Sbjct: 713 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 772

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    N+++   +  +        ++    R  + G  + V V  LI+Q TI+E 
Sbjct: 773 GLGINLTS-ANVVILHDIDCNP-----YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEES 826

Query: 180 VLQRLRTKSTIQDLL 194
           +L+  + K  ++  +
Sbjct: 827 MLKINQQKLKLEQDM 841


>gi|4204312|gb|AAD10693.1| Hypothetical protein [Arabidopsis thaliana]
          Length = 874

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 55/220 (25%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE---------------------------------- 50
                +K  Q++N           +                                   
Sbjct: 475 VLPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLS 534

Query: 51  --VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK--------- 96
              H  K++ALE ++    +    I++  +    L    +    +G +  +         
Sbjct: 535 DVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNL 594

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N      +      + G GLNL    N +V F   W+        +     R
Sbjct: 595 RQSLVDDFNASPSKQVFLISTKAGGLGLNLVS-ANRVVIFDPNWNPSH-----DLQAQDR 648

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G KR V V+ L++  +++ELV  R   K  + ++ +
Sbjct: 649 SFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV 688


>gi|327284355|ref|XP_003226904.1| PREDICTED: transcriptional regulator ATRX-like [Anolis carolinensis]
          Length = 2334

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE---- 64
            ++   +   E +E         + L++A      +E      V  + + +L++I +    
Sbjct: 1843 KDFVTEADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 1896

Query: 65   ----KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPA 117
                K    PI+                    T        +E+N+       L      
Sbjct: 1897 ASRDKEEGKPIVYKGEGKWFRNIDYYRLDGSTTAQSRKKWAEEFNDVTNVRGRLFIISTK 1956

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   G+NL    N ++ F   W+        +   + R  + G  +AVFVY  +AQ T++
Sbjct: 1957 AGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKAVFVYRFLAQGTME 2010

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            + +  R  TK ++   +++
Sbjct: 2011 DKIYDRQVTKQSLSFRVVD 2029


>gi|242018945|ref|XP_002429929.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514975|gb|EEB17191.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1234

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 6/188 (3%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            ++  + +   I A        + L++ + A                I+     +   N  
Sbjct: 908  KILKEEEFTEIRASGKLVLLFQILKICHQAGDKLLVFSQYLTTLNLIEYFLRFVNDNNNK 967

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
                                  ++         + N  ++ LL     + G G+NL    
Sbjct: 968  NDECNTWVTGVDYYRIDGTTNSQSRFDYCKKFNDKNNKRLRLLLISTRAGGLGINLVS-A 1026

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            N ++ F + W+     Q I R+      + G ++  ++Y  +++ T++E + QR  TK +
Sbjct: 1027 NRVIIFDVSWNPSHDLQSIFRV-----YRFGQRKTCYIYRFLSEATMEEKIYQRQVTKLS 1081

Query: 190  IQDLLLNA 197
            +   +++ 
Sbjct: 1082 LAHRIIDE 1089


>gi|322493268|emb|CBZ28553.1| DNA repair protein-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 909

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA---------- 87
            +   +  +W      K + L   I        ++V   F + L   Q            
Sbjct: 693 HLDLTDMNNWSLQLSSKTQYLIDTIRSLPVEDKVVVFSTFLTYLRCAQHWLQAAGVSCAL 752

Query: 88  FPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +    T+ +    ++ +++    G   +L A  +SCG GLNL    N        W+   
Sbjct: 753 YSGSMTMKQRQSLLELFHDAARPGSPRVLLATISSCGVGLNLT-CANHCFLMEPSWNPGT 811

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                E   + R  + G  + V    LIA+ TI++ + Q    K  + 
Sbjct: 812 -----EEQALNRIYRIGQTKPVTFTKLIAEGTIEQNISQLCERKRALS 854


>gi|189199742|ref|XP_001936208.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983307|gb|EDU48795.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1026

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLF 113
            +   A  +V   F S L  ++ A  +                +     +     +  +L 
Sbjct: 871  EEPNAKTVVFSQFTSFLDLIEPALTRDHIPFLRFDGSISQKVRAQILTEFTTSPRPYVLL 930

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    N +     WW        +E   + R  + G +R V V     Q
Sbjct: 931  LSLRAGGVGLNLT-CANKVFMMDPWWSFA-----VEAQAIDRVHRMGQEREVKVVRFCVQ 984

Query: 174  NTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
             +I+E +L+    K  I     +++  +K    +
Sbjct: 985  GSIEEKMLRIQERKKFIASSLGMMSDEEKRVQRI 1018


>gi|86136167|ref|ZP_01054746.1| probable swi/snf family helicase 2 [Roseobacter sp. MED193]
 gi|85827041|gb|EAQ47237.1| probable swi/snf family helicase 2 [Roseobacter sp. MED193]
          Length = 603

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----------EVHD 53
           Y   +                +   T++   +       +  ++ +           +  
Sbjct: 378 YRDVRDATMEKYP-----VAGALVATLQLQLVCAHPWLRNSGENEECAALVPAADMPLVT 432

Query: 54  EKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCT 100
            K++    ++ +A  N   +IV   FN     L++A                  +     
Sbjct: 433 PKMERAVDLLREAFANGRKVIVFALFNRIGDLLKQACSHLPDTHWGAINGSTPQEDRQTI 492

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I  +   +                      +++ F+  W+        E     R  + G
Sbjct: 493 IDLFAAHEGSACLVLNPKAAGAGLNITAATVVIHFTPVWNPAL-----EAQASARAHRRG 547

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               V VY L   +T++E+++ R   K+ + +  +
Sbjct: 548 QTEPVTVYRLFYLDTVEEVMIDRSAWKNDLANETV 582


>gi|320163536|gb|EFW40435.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1077

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            ++ +DLAR Q+A             I         ++     + G GLNL    N +V  
Sbjct: 938  NWTADLARQQQANANSTDKKSKHPLI-----TGSRVMLLSLLAGGVGLNLVA-ANHVVIA 991

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+     Q  +R       + G    V V+ LI + T++E V      K  +   ++
Sbjct: 992  DGHWNPALEDQACDR-----AYRVGQPLKVTVHRLICKGTVEERVAALQAKKRALSKDII 1046

Query: 196  NALKK 200
             + + 
Sbjct: 1047 QSARA 1051


>gi|302419287|ref|XP_003007474.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
 gi|261353125|gb|EEY15553.1| ATP-dependent helicase RIS1 [Verticillium albo-atrum VaMs.102]
          Length = 1131

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 53   DEKIKALEVIIEKANAA-----PIIVAYHFN-------------SDLARLQKAFPQGRTL 94
              K++A   +I++           ++   +               +L  +      G   
Sbjct: 954  SAKVQACVDLIKQIRDESDGRAKTLIFSQWTMFIDLMEIALQKDEELKHVGHVRYDGDMN 1013

Query: 95   DKDP--CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             KD      +     +  L+     +   GLNL    + ++    +W+     Q ++R+ 
Sbjct: 1014 MKDRFKSAQRFRENPRTKLMLISLKAGNAGLNL-VQASRVIILDPFWNPFVEMQAVDRV- 1071

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 + G +  V VY ++ ++++++ +++    K    +  L+    + + +
Sbjct: 1072 ----HRIGQQNEVKVYRILVKDSVEDRIMEIQTKKREAIEAALDGKASKGMGL 1120


>gi|164659175|ref|XP_001730712.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
 gi|159104609|gb|EDP43498.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
          Length = 838

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 70  PIIVAYHFNSDL-----------ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             +V   F + L            R+ +         +D           I +      +
Sbjct: 687 KSLVFSQFVNFLDLIAFRLQRAGFRICRLEGNMTPDARDRTIRLFMENPGITVFLVSLKA 746

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G  R + V  +I +N+I+ 
Sbjct: 747 GGVALNLTE-ASRVYLMDPWWNPAVEVQAMDRI-----HRLGQHRPIVVKRMIIENSIES 800

Query: 179 LVLQRLRTKSTIQDLLLN 196
            +++    KS + D  L 
Sbjct: 801 RIIELQNKKSAMVDAALG 818


>gi|297797399|ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312419|gb|EFH42843.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +  +++        +++       L  +Q                        T
Sbjct: 738 SCKLSFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKT 797

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+ EG + P+        G GL L    + ++     W+     Q ++R       + 
Sbjct: 798 VEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRI 851

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY L+   T++E + ++   K  +        ++
Sbjct: 852 GQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQ 892


>gi|121713600|ref|XP_001274411.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus clavatus NRRL 1]
 gi|119402564|gb|EAW12985.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Aspergillus clavatus NRRL 1]
          Length = 657

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 32/182 (17%)

Query: 32  CLQLANGAVYYDEE-------KHWKEVHDEKIKALEVIIE---KANAAPIIVAYHF---- 77
             Q +                      +  K  AL+ +++   +     +I+  +F    
Sbjct: 481 LAQCSIHPYLLTNAIPDPYILGDHVFNNSGKFIALQKLLKHYVEVENTKVIIFSNFEQAL 540

Query: 78  --NSDLARLQKAFPQGRTLDK---------DPCTIQ-EWNEGKIPLLFAHPASCGHGLNL 125
               DL  + +         +             +    N+    +      + G GLNL
Sbjct: 541 NLCEDLVMIMQGTSPAFEYLRLDGRTTSPWRKLMVYLFQNDPSYMIFLLSIRAAGEGLNL 600

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               ++++F    W+ +     + +   +R  + G  R V +Y L +  T++E + QRL 
Sbjct: 601 TS-SSVVIFLDEDWNPQ-----VMKQAESRAHRIGQSRPVRIYKLRSSGTVEEQMSQRLA 654

Query: 186 TK 187
            K
Sbjct: 655 KK 656


>gi|324508390|gb|ADY43542.1| Transcription termination factor 2 [Ascaris suum]
          Length = 693

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 20/183 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR 92
           +A+G     E          K+ AL   +++A       ++   + S L  ++    Q  
Sbjct: 469 IADGHQGNVEYLFEAPFQSAKLVALFERLDQALALGDKCVIVSQWTSLLDIVEYHLKQRD 528

Query: 93  TLD----------KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                             ++ +N   G   ++       G       GGN L    L W+
Sbjct: 529 VQYTSITGKVLTKDRQPRVESFNRVGGGARVMLLSLT-AGGVGLNLVGGNHLFLIDLHWN 587

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               QQ  +RI      + G  + VF++ +I   TI+E VL   ++K  +   +L     
Sbjct: 588 PALEQQACDRI-----YRMGQTKEVFIHKIICLGTIEERVLTLQQSKMALAKGVLEGAAS 642

Query: 201 ETI 203
           + +
Sbjct: 643 KKL 645


>gi|164428480|ref|XP_965771.2| hypothetical protein NCU00631 [Neurospora crassa OR74A]
 gi|157072163|gb|EAA36535.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1044

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              +E  D K    + + ++ANA+    A     D                         +
Sbjct: 875  KPEEKEDWKPTVFDQLRKEANASRNQDA----RDRLLQYTWDHW------QDSAKAFVED 924

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              + +L     +   GLNL    + ++    +W+       IE   V R  + G +R V 
Sbjct: 925  PDVKVLLVSLKAGNAGLNLT-VASRVIVCDPFWNP-----FIEDQAVDRAYRIGQQREVH 978

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            VY ++ Q TI++ +++    K  I +  L+
Sbjct: 979  VYKILVQETIEDRIIELQNLKRNIVETALD 1008



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 8/30 (26%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKE 50
              N     ++  Q        D E + K 
Sbjct: 695 NYSNILVLLLRLRQACCHPHLTDFEANPKN 724


>gi|1881825|gb|AAB49515.1| Rhp16 [Schizosaccharomyces pombe]
          Length = 854

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F S L  +     +          G T      TI+ + N+  I +      +
Sbjct: 703 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 762

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G K  + V  L  +N+I+ 
Sbjct: 763 GGVALNLTE-ASQVFMMDPWWNGAVQWQAMDRI-----HRIGQKGRIKVITLCIENSIES 816

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIHV 205
            +++    K+ +    ++  +K    +
Sbjct: 817 KIIELQEKKAQMIHATIDQDEKALNQL 843


>gi|310800518|gb|EFQ35411.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1150

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP- 110
            + ++      +V   F S L+ ++                         + E+ E K   
Sbjct: 992  LRKEQPRVKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFQESKTFT 1051

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL      +     WW        +E   + R  + G    V VY  
Sbjct: 1052 VLLLSLRAGGVGLNLTS-AKRVFMMDPWWSFA-----VEAQAIDRVHRMGQDEEVKVYRF 1105

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I + +++E +L+    K  I   L
Sbjct: 1106 IVKESVEERMLRVQDRKKFIATSL 1129


>gi|299740345|ref|XP_001838866.2| hypothetical protein CC1G_09243 [Coprinopsis cinerea okayama7#130]
 gi|298404200|gb|EAU82981.2| hypothetical protein CC1G_09243 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 50  EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTL 94
            +   K+K +  +IEK         I+V   + + L               K        
Sbjct: 488 FLPSTKMKYMMELIEKSFKSRPDEKILVVSQWTACLTLVSDYLAEKGIAHVKYQGDMDRN 547

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +D       ++ K  ++       G GLNL    N ++   L W      + +E     
Sbjct: 548 KRDQAVRVFMSKDKARVMLMSLKCGGVGLNLTR-ANNVISLDLAWS-----RAVESQAWD 601

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           R  + G  R V V  L+  NT+++ +L     K ++ D
Sbjct: 602 RVHRLGQTRNVNVQRLVIANTVEDRILALQERKQSLAD 639


>gi|221057846|ref|XP_002261431.1| SNF2 family protein [Plasmodium knowlesi strain H]
 gi|194247436|emb|CAQ40836.1| SNF2 family protein, putative [Plasmodium knowlesi strain H]
          Length = 2872

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+E+N  +    +      + G G+NL    N ++ 
Sbjct: 1218 YCKYRCWKYMRLDGSTNKLIRELDIREFNLNDSIYFIYLISTRAGGLGINLTA-ANHVIM 1276

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G KR V V+ L+ + T++E +  R   K  +  L+
Sbjct: 1277 YDEDWNP-----FIDLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQKLKLDKLV 1331

Query: 195  LNALKKETI 203
            +     E +
Sbjct: 1332 VQTQDDEDM 1340


>gi|85540719|sp|Q7S1P9|RAD5_NEUCR RecName: Full=DNA repair protein rad-5
          Length = 1222

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN 105
            I  L  + ++      +V   F S L+ +  A  +            +       + E+ 
Sbjct: 1056 ISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQ 1115

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L     + G GLNL      +     WW        +E   + R  + G +  
Sbjct: 1116 STNKFCVLLLSLKAGGVGLNLTS-AKRVYMMDPWWSFA-----VEAQAIDRVHRMGQEDE 1169

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V VY  I + +++  +L+    K  I     +++  +K+   +
Sbjct: 1170 VRVYRFIVKQSVEMRMLRVQERKKFIATSLGMMSDEEKKMQRI 1212



 Score = 34.7 bits (78), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 39/152 (25%), Gaps = 5/152 (3%)

Query: 8    QRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +R L+ ++Q   +     +  ++ ++  Q     V    ++   +  +  + A       
Sbjct: 860  KRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEILADEEEANMAADVAAGLA 919

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             +     +   F +      K               +  NE   P+    P         
Sbjct: 920  DDMDLQTLIERFTATTDDASKTNNNFGAHVLRQIRDEAVNE--CPICAEEPMIDQAVTGC 977

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             +               +  + + R    R+ 
Sbjct: 978  WHSACKKCLLDYIKHQTDRNE-VPRCFQCREH 1008


>gi|195344342|ref|XP_002038747.1| GM10445 [Drosophila sechellia]
 gi|194133768|gb|EDW55284.1| GM10445 [Drosophila sechellia]
          Length = 547

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL+     F    T  +    ++++N      +L     + G GLNL    N ++   L
Sbjct: 410 QDLSWETLDFNGQLTAKEREIVVRDFNANNDKRVLLLSLTAGGVGLNL-NVANHMLIVDL 468

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  +  ++L
Sbjct: 469 HWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEMAKVVL 521



 Score = 37.8 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           + Y +F +       GE I         ++  Q        
Sbjct: 218 EIYERFLK-SLGYNPGEKILGIYILVLLLRLRQFCCHPGLM 257


>gi|302803682|ref|XP_002983594.1| hypothetical protein SELMODRAFT_180307 [Selaginella moellendorffii]
 gi|300148837|gb|EFJ15495.1| hypothetical protein SELMODRAFT_180307 [Selaginella moellendorffii]
          Length = 364

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDK 96
             +     K++AL   +E    +  +V   + + L  L+    +            +  K
Sbjct: 193 EEQWKESSKVEALLQQLETLRESKSVVFSQWTAFLDLLEIPLKRKNVRFVRLDGTLSQHK 252

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++++ N   + ++     + G GLNL    +       WW+    +Q I RI    
Sbjct: 253 REQVLKDFSNIPDVAVMLISLKAGGVGLNLTA-ASNAFLMDPWWNPAVEEQAIMRI---- 307

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G  + V +   I +++++E + Q    K  +    L   +  +  +
Sbjct: 308 -HRIGQTQNVSIKRFIVKDSVEERMQQVQARKQRLIAGALTDEEVRSARI 356


>gi|17862980|gb|AAL39967.1| SD07188p [Drosophila melanogaster]
          Length = 655

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                    ++++     +++N     +  L      + G G+NL    N +V F + W+
Sbjct: 306 DYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVA-ANRVVIFDVSWN 364

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                Q I R+      + G  +  ++Y LIA  T+++ V +R   K      +++ 
Sbjct: 365 PSHDTQSIFRV-----YRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDE 416


>gi|194744636|ref|XP_001954799.1| GF16563 [Drosophila ananassae]
 gi|190627836|gb|EDV43360.1| GF16563 [Drosophila ananassae]
          Length = 884

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN---------SDL 81
           K LQL +      +           I+ LE ++       I+V+             +DL
Sbjct: 689 KALQLMSPQNPIFDFSRSSAKLKLVIEKLEELLNGTGDKIIVVSQWITFIGVIRQRLNDL 748

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                 F    +  +    ++++N       +L    ++ G GLNL    N ++   L W
Sbjct: 749 CWSTLDFTGQLSAKERELVLRDFNNPNNDKRVLLLSLSAGGVGLNL-NVANHMLLVDLHW 807

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + +  +Q  +RI      + G K+  F+Y  + Q T+++ +      K  I  ++L
Sbjct: 808 NPQLQKQAQDRI-----YRYGQKKPTFIYRFMCQETVEQRIKALQDYKLEIAKVVL 858


>gi|126643947|ref|XP_001388153.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
 gi|126117230|gb|EAZ51330.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
          Length = 807

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 77/211 (36%), Gaps = 30/211 (14%)

Query: 2   KQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
           K Y + +  +    L    I          + L + N  +        + +     K+K 
Sbjct: 599 KGYSRIKVEQYITQLCDYEIHQ-----LVSRLLIVKNSPLLERFRIDDELIINGSCKLKK 653

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGR-------------TLDKDPCTIQ 102
           +  II+     N    ++  H    L  +++                    + +    I+
Sbjct: 654 MNEIIQSTVIENKEKCLIFCHHTMLLDIIEEYIKIKYNIPDFYLRLDGTTPILERQNMIE 713

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   ++PL      + G GLNL    + ++   L ++ +     IE+    R  + G  
Sbjct: 714 KFQTTQVPLFLLSTKAAGQGLNLT-VASSVIMMDLDYNPQ-----IEKQAEDRVHRIGQS 767

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + V ++ L+ ++TI+E +    ++K T+ + 
Sbjct: 768 KQVKIFKLVCKDTIEENIFNCCQSKLTLDNA 798


>gi|332028347|gb|EGI68394.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Acromyrmex echinatior]
          Length = 845

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+K L+ I+ +   +   +++   F   L  L++                 + +    I
Sbjct: 646 GKLKELDKILPQLKTDGHRVLIFSQFTMVLDILEEYLTIRGQTFLRLDGSTPVTERQTLI 705

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++  +  I +      + G G+NL    + ++   + ++        ++    R  + G
Sbjct: 706 NKYTEDPSIFIFLLSTRAGGLGINLTA-ADTVILHDIDFNP-----YNDKQAEDRCHRVG 759

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            K+ V +  L+++ TI+E + +  + K  ++  +   + +E
Sbjct: 760 QKKPVSIIRLLSEGTIEEGMYEIAQEKLHLEQQITGVITEE 800


>gi|326477646|gb|EGE01656.1| DNA excision repair protein [Trichophyton equinum CBS 127.97]
          Length = 1019

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 620 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFL 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 680 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 733

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 734 GTIEEIVYARQIYKQQQAN 752


>gi|326473181|gb|EGD97190.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
          Length = 1019

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 620 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFL 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 680 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 733

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 734 GTIEEIVYARQIYKQQQAN 752


>gi|148744739|gb|AAI42882.1| Smarca5 protein [Danio rerio]
          Length = 534

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     ++   +I  +NE             + G G+NL    ++++ +   W+ +
Sbjct: 8   YCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINL-ATADVVIIYDSDWNPQ 66

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                ++   + R  + G K+ V V+  I  NT++E +++R   K  +  +++   +
Sbjct: 67  -----VDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 118


>gi|42561667|ref|NP_171871.2| SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|332189485|gb|AEE27606.1| switch 2 [Arabidopsis thaliana]
          Length = 862

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 55/220 (25%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKE---------------------------------- 50
                +K  Q++N           +                                   
Sbjct: 463 VLPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLS 522

Query: 51  --VHDEKIKALEVII--EKANAAPIIVAYHFNSDLAR-LQKAFPQGRTLDK--------- 96
              H  K++ALE ++    +    I++  +    L    +    +G +  +         
Sbjct: 523 DVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNL 582

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + ++N      +      + G GLNL    N +V F   W+        +     R
Sbjct: 583 RQSLVDDFNASPSKQVFLISTKAGGLGLNLVS-ANRVVIFDPNWNPSH-----DLQAQDR 636

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G KR V V+ L++  +++ELV  R   K  + ++ +
Sbjct: 637 SFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV 676


>gi|327296351|ref|XP_003232870.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
 gi|326465181|gb|EGD90634.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
          Length = 1019

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 620 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFL 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 680 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 733

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 734 GTIEEIVYARQIYKQQQAN 752


>gi|330917877|ref|XP_003297996.1| hypothetical protein PTT_08573 [Pyrenophora teres f. teres 0-1]
 gi|311329044|gb|EFQ93908.1| hypothetical protein PTT_08573 [Pyrenophora teres f. teres 0-1]
          Length = 1069

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRT 93
           +   +     K+    +    +N   +++  H           F+ D  +   ++  G  
Sbjct: 638 QSQREFCGKWKVLRRLLDFWHSNGDKVLIFSHSVRLLRLLRGLFDVDGTKYNFSYLDGSM 697

Query: 94  LDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +     + ++N +    +      + G GLN+    N +V     W+        +  
Sbjct: 698 KYEDRSQAVADFNADPNQFVFLISTKAGGVGLNITS-ANKVVVMDPHWNPA-----YDLQ 751

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 752 AQDRAYRIGQTRNVEVFRLVSSGTIEEVVYARQIYKQQQAN 792


>gi|310794269|gb|EFQ29730.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1053

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 17/156 (10%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
            +  L  +     +   I+   F+S L  ++    +                +        
Sbjct: 887  VHELHKLRSDNASHKSIIFSQFSSMLQLIEWRLRRAGITTVMLDGSMNPAQRQASINHFM 946

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +           + G  LNL    + +     WW+     Q  +R       + G  R 
Sbjct: 947  TKTDCECFLVSLKAGGVALNLTE-ASRVFIVDPWWNPAAEWQSADRC-----HRIGQTRP 1000

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +  L  +++++  ++     K+ + +  +NA  K
Sbjct: 1001 CTITRLCIEDSVESRMVLIQEKKTNMINSTVNADDK 1036


>gi|302406098|ref|XP_003000885.1| 5-aminolevulinate synthase [Verticillium albo-atrum VaMs.102]
 gi|261360143|gb|EEY22571.1| 5-aminolevulinate synthase [Verticillium albo-atrum VaMs.102]
          Length = 1673

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 10/170 (5%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA--YHFNSDLARLQK 86
              +C  L N      + K    + DE  K  E ++  + + P I      F     R   
Sbjct: 1162 LNRCRDL-NDIGLSWKVKVLIAILDECRKHKEKVLIFSQSIPTIDWLSTLFQQ-QQRPYS 1219

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                          ++ +NEG   +      + G GLN+  G + +V F   ++    Q 
Sbjct: 1220 RLTGDTLPSIRQSMVKNFNEGDNEIFVISTQAGGQGLNIT-GASRVVIFDFRFNPIAEQ- 1277

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  + G  + V VY  ++  T ++ +  +   K  +   +++
Sbjct: 1278 ----QAIGRAYRIGQSKPVVVYRFVSGGTYEQHLYNKAVWKMQLASRVVD 1323


>gi|156398438|ref|XP_001638195.1| predicted protein [Nematostella vectensis]
 gi|156225314|gb|EDO46132.1| predicted protein [Nematostella vectensis]
          Length = 614

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---------- 91
           +    + +     K+    + + + +   +++  +    L  L+                
Sbjct: 381 FQTLSNPEYCGKMKVLDKLLRMFEKDKCKVLLFSYSTELLNILENYVIGRGLVFSRLDGQ 440

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +  +    ++E+N    I +      + G GLN   G N+++ F   W+        + 
Sbjct: 441 TSPAQRMRVVREFNGNRDIFICLVSTKAGGLGLNFT-GANVVIIFDPTWNPSN-----DL 494

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +R V V  LI+  TI+E++  R   K  + +  ++ 
Sbjct: 495 QAQDRAYRIGQRRDVQVLRLISSGTIEEMMYLRQIYKQQMANTAISG 541


>gi|312127313|ref|YP_003992187.1| SNF2-like protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777332|gb|ADQ06818.1| SNF2-related protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 939

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 33/222 (14%)

Query: 1   MKQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-----E 54
           M  Y K    ++  D +    +         K + + +     +++ H K ++       
Sbjct: 698 MTDYQKMLYSKIIADFKKSENKKQILLDTLHKLIYVCDFPEISNDDIHKKNINKVVKECA 757

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCT 100
           K+K L  I+++        ++   F    A L     Q                 +    
Sbjct: 758 KVKKLIEILDEIKQKDEKALIFTKFKPVQAMLSSIIQQRYGLFVNILNGEIRDSSRRKQI 817

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I  +N   +  +L  +    G GLN+    N ++ ++  W+  +     E     R  + 
Sbjct: 818 IDNFNQSAEFNVLILNTQVGGIGLNITS-ANHVIHYTREWNPAK-----EDQATDRVYRI 871

Query: 160 GFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
           G ++ V VYYLI       + TIDE +   L+ K  +   ++
Sbjct: 872 GQQKDVNVYYLITTAPDLVKKTIDEHIHDLLQAKKELFKEVI 913


>gi|149408770|ref|XP_001508504.1| PREDICTED: similar to helicase-like transcription factor
           [Ornithorhynchus anatinus]
          Length = 884

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 23/171 (13%)

Query: 46  KHWKEVHDEKIKALE----VIIEKANAAPIIVAYHFNSDLARLQKAFPQG---------- 91
              + +   KI AL      + +K      ++   F + L+ ++K   +           
Sbjct: 700 TDQEWISSSKINALMHSLIDLRKKNPQTKSLIVSQFTTFLSLIEKPLKESGFVFTRLDGS 759

Query: 92  RTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 760 MPQKKRVESIQCFQSTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 818

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +R       + G K+ V +   I +++++E +L+    K  +        K
Sbjct: 819 DRC-----HRLGQKQEVVITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 864


>gi|17561718|ref|NP_503548.1| hypothetical protein F59A7.8 [Caenorhabditis elegans]
 gi|2291218|gb|AAB65339.1| Hypothetical protein F59A7.8 [Caenorhabditis elegans]
          Length = 518

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +  +N  +G    +     + G GLNL  GGN L+   L W+    QQ  +RI 
Sbjct: 392 KDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNL-IGGNHLIMVDLHWNPALEQQACDRI- 449

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                + G K+ V ++ LI + TI++ V+     K  +   +L       ++
Sbjct: 450 ----YRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATRGMN 497


>gi|330982227|gb|EGH80330.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 93

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +  WW+        E     R  + G  + VFVY +IA+ T++E + +  R KS
Sbjct: 1   ADTVIHYDPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMIARGTVEEKIQRLQREKS 55

Query: 189 TIQDLLLNA 197
            +   +L+ 
Sbjct: 56  ALASGVLDG 64


>gi|302834898|ref|XP_002949011.1| hypothetical protein VOLCADRAFT_43161 [Volvox carteri f.
           nagariensis]
 gi|300265756|gb|EFJ49946.1| hypothetical protein VOLCADRAFT_43161 [Volvox carteri f.
           nagariensis]
          Length = 347

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 33/221 (14%)

Query: 2   KQYHKF-QRELYCDLQGENIEAFNSASKTV-KCLQLANGAVYYDEEK---HWKEVHDEK- 55
           +QY +  +R       G+      + +       + A      +EE+        H    
Sbjct: 133 EQYRQISERGQLMAASGKVRMYTRALANLSVHLRKAAIHPYLLEEERGEYTHTHTHSGLG 192

Query: 56  -------IKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK 96
                  +  L+ ++ K       +++       L                       + 
Sbjct: 193 PGGERGEMAMLDYLLPKLAATGHRVLLFSQMTRALDLVEEFLELRGLPYLRLDGSTRTED 252

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            P  +  +N       +      + G GLNLQ   + ++     W+       +++    
Sbjct: 253 RPQLLTAFNSPNSPYRVFLLSTRAGGMGLNLQS-ADTVIMLDSDWNPA-----MDQQAED 306

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           R  + G  R+V V  L++  T++E++L+R   K  + + ++
Sbjct: 307 RAHRLGQTRSVLVLVLVSCRTLEEVMLERAGAKRGLGEAVI 347


>gi|58259855|ref|XP_567340.1| DNA repair protein RAD5 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|134116468|ref|XP_773188.1| hypothetical protein CNBJ1830 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255809|gb|EAL18541.1| hypothetical protein CNBJ1830 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57229390|gb|AAW45823.1| DNA repair protein RAD5, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1359

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 19/196 (9%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIVAYHFN 78
            E  N ++K              +      +    +   +E +  +        IV   + 
Sbjct: 1157 EKLNLSTKMQFLHDELLRFSKKNPHSAHYDPFSLEQDDVEEMDAEGKPVVTKSIVFSQWT 1216

Query: 79   SDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
            + L R+     +            T D+    I     +  + +L     + G GLNL  
Sbjct: 1217 TMLDRIADMLDETNIRYARLDGTMTRDERSKAIDALKFKKNVEVLLVSTRAGGVGLNLT- 1275

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              +       +W+     Q I+RI      + G  R V    L+ +++I+E + +  + K
Sbjct: 1276 VASRCYLVDPYWNPSVESQAIDRI-----HRMGQTRPVVAIKLMIKDSIEEKLDKIQKKK 1330

Query: 188  STIQDLLLNALKKETI 203
            + +  L L  + ++ +
Sbjct: 1331 AELAQLSLKNMSRKEL 1346


>gi|85090635|ref|XP_958511.1| DNA repair protein RAD5 [Neurospora crassa OR74A]
 gi|28919880|gb|EAA29275.1| DNA repair protein RAD5 [Neurospora crassa OR74A]
 gi|118496044|dbj|BAF37538.1| DNA repair and recombination protein MUS41 [Neurospora crassa]
          Length = 1175

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN 105
            I  L  + ++      +V   F S L+ +  A  +            +       + E+ 
Sbjct: 1009 ISHLRTLRQEHPKMKSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQ 1068

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L     + G GLNL      +     WW        +E   + R  + G +  
Sbjct: 1069 STNKFCVLLLSLKAGGVGLNLTS-AKRVYMMDPWWSFA-----VEAQAIDRVHRMGQEDE 1122

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V VY  I + +++  +L+    K  I     +++  +K+   +
Sbjct: 1123 VRVYRFIVKQSVEMRMLRVQERKKFIATSLGMMSDEEKKMQRI 1165



 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 39/152 (25%), Gaps = 5/152 (3%)

Query: 8   QRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +R L+ ++Q   +     +  ++ ++  Q     V    ++   +  +  + A       
Sbjct: 813 KRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEILADEEEANMAADVAAGLA 872

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            +     +   F +      K               +  NE   P+    P         
Sbjct: 873 DDMDLQTLIERFTATTDDASKTNNNFGAHVLRQIRDEAVNE--CPICAEEPMIDQAVTGC 930

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            +               +  + + R    R+ 
Sbjct: 931 WHSACKKCLLDYIKHQTDRNE-VPRCFQCREH 961


>gi|322493154|emb|CBZ28439.1| putative DNA repair protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 736

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
           ++++  + +   A  +I+   F S +                     +L      I+++ 
Sbjct: 510 LRSIHDMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRNAVIRQFQ 569

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I ++ A   + G GLNL    N +V    WW+       IE   V R  + G K+ 
Sbjct: 570 TTEHIKIVLASKTATGVGLNLTA-ANHVVVVDPWWNPA-----IEEQAVHRCYRIGQKKP 623

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V+V   I  +TI++   +  + K    D +L A
Sbjct: 624 VYVTRFIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|269860637|ref|XP_002650038.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066525|gb|EED44003.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 1176

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 62/241 (25%), Gaps = 50/241 (20%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKH------------- 47
           + Y     + +  LQ        N  +  ++  +           +              
Sbjct: 504 RYYRAILEKNFEFLQSNSKKNVPNLINAMMELRKCCIHPYLLKGAEETIVRDYLQRKKIN 563

Query: 48  -WKEVHDEKIKALEVIIEK-------------------ANAAPIIVAYHFNSDLARLQKA 87
               V +      E +  +                        +++       L  L + 
Sbjct: 564 VRVNVDNMLHSLGEDLYYQILIQSSGKLVLLDKLLVKLQGKHKVLIFSQMTKCLDLLSEY 623

Query: 88  FPQGRTLDKD----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +   +              I  ++     +      + G G+NL    +  + F  
Sbjct: 624 LSYRKFKYERIDGSIRGDLRQAAIDRFSTEDSFVFLLCTRAGGVGINLTA-ADTCIIFDS 682

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+ +      +     R  + G K  V +Y L+ +N+ +  +  +   K  +   +L  
Sbjct: 683 DWNPQN-----DLQAQARCHRIGQKNQVKIYRLVTKNSYEREMFDKAGMKLGLDKAVLQK 737

Query: 198 L 198
           +
Sbjct: 738 M 738


>gi|159897832|ref|YP_001544079.1| helicase domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890871|gb|ABX03951.1| helicase domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 669

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 9/173 (5%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           +  + L++ +        K    +   K    ++I+     A +     F  D       
Sbjct: 444 ELERLLKIVDE--MQIPSKARTLLKIIKNDDSKIIVYTEFVATLEFLRDFLVDHGVESVL 501

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           F  G +  +    ++ + +GK  +      S G GLNLQ+  + LV + L W+    +Q 
Sbjct: 502 FHGGLSGMQKRNAVERFRDGKAQVFL-STESGGQGLNLQF-CHRLVNYDLPWNPMRIEQR 559

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           I R+      + G +R V +Y LI + TI+E +L  L  K  +   ++  +  
Sbjct: 560 IGRV-----HRYGQERPVEIYTLILRGTIEEYILHVLTGKIDMFQTVIGEIDA 607


>gi|302502981|ref|XP_003013451.1| hypothetical protein ARB_00269 [Arthroderma benhamiae CBS 112371]
 gi|291177015|gb|EFE32811.1| hypothetical protein ARB_00269 [Arthroderma benhamiae CBS 112371]
          Length = 1019

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
            AN   ++V  H    L  LQ  F              + +     +  +N + +  +  
Sbjct: 620 HANGDKVLVFSHNVRLLKMLQMLFNHTSYNVSYLDGSMSYEDRSNIVNAFNSDPRQFVFL 679

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 680 ISTKAGGVGLNITS-ANKVVVVDPNWNPA-----YDLQAQDRAYRIGQLRDVEVFRLVSA 733

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 734 GTIEEIVYARQIYKQQQAN 752


>gi|296424248|ref|XP_002841661.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637907|emb|CAZ85852.1| unnamed protein product [Tuber melanosporum]
          Length = 1022

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 24/168 (14%)

Query: 52   HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKD 97
               K++ L   + +           V   F + L  ++K           F    +  K 
Sbjct: 848  SSAKVEMLIEKLSETERSCPERKSCVFSQFTTFLDIIEKELQRRRIKFLRFDGSMSQQKR 907

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +  +    +L     + G GLNL    + +     WW        +E   + R 
Sbjct: 908  AEVVSTFKMDQGPNILLLSLRAGGVGLNLTT-ASQVFMMDPWWSFA-----VEAQAIDRV 961

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDL--LLNALKKE 201
             + G    V VY  + + T++E ++      K  I     ++N  +K+
Sbjct: 962  HRMGQTSEVMVYRFVVEGTVEERIVHTIQARKKFIASSLGMMNDEEKK 1009


>gi|322806869|emb|CBZ04439.1| hypothetical protein H04402_02632 [Clostridium botulinum H04402
           065]
          Length = 366

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF+++    +    +    S +K +   QLA+            + +  K+ +L+ 
Sbjct: 182 KEYKKFKKDRLITINNTELVGDTSLTKMLYLRQLAS------------QYNPNKLSSLKD 229

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAF----PQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            +E      +I+ Y+F  ++ ++++           ++     ++ +      ++     
Sbjct: 230 SLESTED-RVIIFYNFTEEMKQIKEVCGRLEKPVSIVNGQTKDLENYKTKDNAVVLVQYQ 288

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N +V++SL    E  +         R  + G  R    +YLI +N+I+
Sbjct: 289 AGAMGLNLQ-LSNKIVYYSLPLASELFE-----QSKKRTHRIGQTRTCMYWYLITKNSIE 342

Query: 178 ELVLQRLRTKSTIQDLLLNALKK 200
           E + + L+ +    D L   L++
Sbjct: 343 EQIFETLKERKDFTDKLFEELEE 365


>gi|145532411|ref|XP_001451961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419638|emb|CAK84564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1135

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 51   VHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPC 99
                KI+ +  I++        ++   F   +  ++                    +   
Sbjct: 965  KRSSKIEKVMQILDAIPKNEKCVIFTQFIGMIQMIEFDLDNQKIKHLRLDGSMPQQERAE 1024

Query: 100  TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++ +  + +  +      + G GLNL    N ++    WW+    +Q IER+      +
Sbjct: 1025 VLKTFKEDDEYRIFIISLKAGGVGLNLTS-ANHVIMIDPWWNPAVEEQAIERV-----YR 1078

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             G  +   VY LI + T++E +++    K  + +  +   ++ ++ +
Sbjct: 1079 IGQTKETHVYRLICKQTVEERMIKLHDVKKQLFESSIRTEERSSLRM 1125



 Score = 37.8 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 40/141 (28%), Gaps = 14/141 (9%)

Query: 3   QYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
            Y K +++   +++G         +        ++  Q+ +  +        K +     
Sbjct: 791 VYDKMEKKSQDEVEGYLAKGILMSQYMKVFELLIRLRQICDHPLLITSRSDVKNID---- 846

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLF 113
             LE  I+K  ++  +        L   Q+              ++   E      P+  
Sbjct: 847 -QLEEQIDKFLSSQSLDREDQEELLMNNQQVQICQDQQQYKQEVLRRVKENDIPPCPVCL 905

Query: 114 AHPASCGHGLNLQYGGNILVF 134
                    + L +   + ++
Sbjct: 906 EQVEDTIVTICLHFLCRLCLY 926


>gi|312086132|ref|XP_003144957.1| helicase DNA-binding protein [Loa loa]
 gi|307759879|gb|EFO19113.1| helicase DNA-binding protein [Loa loa]
          Length = 1412

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 20/160 (12%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PC 99
              K+  +  ++ K +     +++       L  +++         +             
Sbjct: 82  SSGKLVLIAKLLPKLHTDGHKVLIFSQMVRVLDIIEEFLIAQNYTFERIDGNVRGDLRQS 141

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I  +   +    +      + G G+NL    + ++ F   W+ +      +     R  
Sbjct: 142 AIDRFSKKDSDRFIFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN-----DLQAQARCH 195

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  + V VY LI  NT +  +  +   K  +   +L +
Sbjct: 196 RIGQTKMVKVYRLITCNTYEREMFDKASLKLGLDRAVLQS 235


>gi|299531068|ref|ZP_07044481.1| helicase domain-containing protein [Comamonas testosteroni S44]
 gi|298721025|gb|EFI61969.1| helicase domain-containing protein [Comamonas testosteroni S44]
          Length = 616

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 15/193 (7%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           ++Y ++ G+      +  K V+  +   G  V Y  E       D+K+      +    A
Sbjct: 410 DVYKEIYGDM--TLQAMPKIVRLRKCLEGLKVPYLVETVQAMGEDDKLIIFCEYMSTVEA 467

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
               +A      L     +     +L +    +  +  +  I +      + G G+ L  
Sbjct: 468 LKQALAS-----LGVGCVSLVGSDSLKRRQAAVDAFQRDASIKVFIGTTMAAGVGITLTA 522

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NI+ F S+ W          R    R  + G  R V V   I Q TIDE VLQ    K
Sbjct: 523 -ANIVAFASMPWTPALM-----RQAEDRAYRLGQIRDVLVLVPIIQGTIDEGVLQLQENK 576

Query: 188 STIQDLLLNALKK 200
            T +  ++ A KK
Sbjct: 577 HTTEIEVVEAAKK 589


>gi|331217115|ref|XP_003321236.1| Rad54b [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309300226|gb|EFP76817.1| Rad54b [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 965

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 27/158 (17%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN 105
           +     I++K N   II+  +F   L  ++                    +    +Q +N
Sbjct: 661 LAKFLDILKKKNNEKIILVSNFTKTLDIVESHCKASHYPFCRLDGKTAQNQRDNIVQVFN 720

Query: 106 EGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                   +      S G GLNL              +        +   + R  + G +
Sbjct: 721 RSSASAQFIFLLSSKSGGVGLNL---------IGASRNPAT-----DLQAMARIWRQGQQ 766

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +   +Y  +   TIDE + QR  TK  +   L++A K 
Sbjct: 767 KPCHIYRFLTTGTIDECIFQRQVTKIGLATDLMSAPKA 804


>gi|328854430|gb|EGG03562.1| hypothetical protein MELLADRAFT_89936 [Melampsora larici-populina
           98AG31]
          Length = 767

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 74/259 (28%), Gaps = 63/259 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
            Y  F R+   + + +  +      +        N  + + + +   +            
Sbjct: 496 LYQNFLRQFGVE-RKQKFQGGEFFKQLTNLRMTCNHPLLFRQIEQGVDAENQPINLIEQK 554

Query: 51  ---------VHDEK-----------------IKALEVIIEKANAAPIIVAYHFNSDLARL 84
                    +H+ K                 +  +    +       ++   + S +  +
Sbjct: 555 LGIKLPDERIHNSKVRDAIPTDWKLSPKIAYLVHMLQKKKSHGGGKSVIYTQWKSFIDWI 614

Query: 85  QKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             AF       +                    +  +        + G GLN+    + + 
Sbjct: 615 IMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAFVVSIEAGGVGLNMT-CADEVY 673

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                W+ +  QQ ++R+      + G  + V V++++   +I++ +    + K+ +   
Sbjct: 674 LMDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVTGQSIEQHLYNVQKRKAALAKR 728

Query: 194 LL-------NALKKETIHV 205
           ++          K E + V
Sbjct: 729 VITLTVPTEELEKAEALRV 747


>gi|157871612|ref|XP_001684355.1| DNA repair protein [Leishmania major strain Friedlin]
 gi|68127424|emb|CAJ05152.1| putative DNA repair protein [Leishmania major strain Friedlin]
          Length = 736

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGKI 109
            + +   A  +I+   F S +                     +L      I+++     I
Sbjct: 515 DMQKNHPADKMIIFSQFTSFMDVISVALDRYNIAFLRIDGTMSLSNRNAVIRQFQTSEHI 574

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++ A   + G GLNL    N +V    WW+       IE   V R  + G K+ V+V  
Sbjct: 575 KIVLASKTATGVGLNLTA-ANHVVVVDPWWNPA-----IEEQAVHRCYRIGQKKPVYVTR 628

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I  +TI++   +  + K    D +L A
Sbjct: 629 FIIADTIEQYCYEICQRKKEFGDAVLRA 656


>gi|67970134|dbj|BAE01411.1| unnamed protein product [Macaca fascicularis]
          Length = 889

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 702 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 761

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 762 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 816

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 817 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 864


>gi|114595206|ref|XP_001163635.1| PREDICTED: SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform 1 [Pan troglodytes]
          Length = 891

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 704 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 763

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 764 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 818

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 819 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 866


>gi|302885430|ref|XP_003041607.1| hypothetical protein NECHADRAFT_77238 [Nectria haematococca mpVI
           77-13-4]
 gi|256722511|gb|EEU35894.1| hypothetical protein NECHADRAFT_77238 [Nectria haematococca mpVI
           77-13-4]
          Length = 948

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 18/155 (11%)

Query: 53  DEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTI 101
             K++AL   I     +   IV   +   L  ++    +              ++    +
Sbjct: 778 SSKVEALMTDIKTLPPSEKCIVFSTWRLTLDMVEVGLEKAHIPSVRFDGKVPQNERQEIV 837

Query: 102 QEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +  +  + ++    +    GL L             W+        E   + R  + G
Sbjct: 838 ERFRTDPSVRVMLLTLSCGAAGLTLT-VATRAYLMEPHWNPTL-----EEQALARIHRIG 891

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R V       +++ ++ V++   +K  +  LLL
Sbjct: 892 QTREVTTVRFYVRDSFEQHVMEVQDSKKHLSGLLL 926


>gi|148910874|gb|ABR18490.1| SNF2P [Triticum turgidum]
          Length = 878

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 41/231 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL       G +    +  +  V+  +  +    +        EE      
Sbjct: 303 KIYLSVLRKELQTLLSFTGGSSRHQSLQNIVVQLRKACSHPYLFSGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              K+  L++++EK +     +++       L              +        ++   
Sbjct: 363 ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLDGSVRAEERFA 422

Query: 100 TIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            I+ +             N     +      + G GLNL  G + ++F+   W+ +    
Sbjct: 423 AIRNFSSQPTKGVVRDDSNPSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA--- 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + R  + G    V    L++Q TI+E++++R   K  +   +   
Sbjct: 479 --DKQALQRTHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFGD 527


>gi|194899988|ref|XP_001979539.1| GG15997 [Drosophila erecta]
 gi|190651242|gb|EDV48497.1| GG15997 [Drosophila erecta]
          Length = 232

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS I
Sbjct: 1   MVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 55

Query: 191 QDLLLNA 197
           Q ++++ 
Sbjct: 56  QRMVISG 62


>gi|149701562|ref|XP_001497332.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
           actin-dependent regulator of chromatin, subfamily a,
           containing DEAD/H box 1 isoform 3 [Equus caballus]
          Length = 892

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 705 HINNFQLDMDLILDSGKFRVLGRILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 764

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 765 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 819

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 820 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 867


>gi|297293038|ref|XP_002804187.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like isoform 3 [Macaca mulatta]
          Length = 891

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 704 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 763

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 764 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 818

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 819 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 866


>gi|296810938|ref|XP_002845807.1| CHR9/SNF2/SWI2 [Arthroderma otae CBS 113480]
 gi|238843195|gb|EEQ32857.1| CHR9/SNF2/SWI2 [Arthroderma otae CBS 113480]
          Length = 1011

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
             N   +++  H    L  LQ  F              + ++    +  +N + +  +  
Sbjct: 622 HTNGDKVLIFSHNVRLLKMLQMLFNHTSYNVSYLDGAMSYEERANVVNSFNSDPRQFVFL 681

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    N +V     W+        +     R  + G  R V V+ L++ 
Sbjct: 682 ISTKAGGVGLNITS-ANKVVVVDPNWNPS-----YDLQAQDRAYRIGQLRDVEVFRLVSA 735

Query: 174 NTIDELVLQRLRTKSTIQD 192
            TI+E+V  R   K    +
Sbjct: 736 GTIEEIVYARQIYKQQQAN 754


>gi|224098380|ref|XP_002196003.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            [Taeniopygia guttata]
          Length = 2434

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFS 136
                         T        +E+N+       L      +   G+NL    N ++ F 
Sbjct: 2021 FRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFD 2079

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+        +   + R  + G  + VFVY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2080 ASWNPS-----YDIQSIFRVYRFGQNKPVFVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2134


>gi|45357056|gb|AAS58484.1| SNF2P [Triticum monococcum]
          Length = 882

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 41/231 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL       G +    +  +  V+  +  +    +        EE      
Sbjct: 303 KIYLSVLRKELQTLLSFTGGSSRHQSLQNIVVQLRKACSHPYLFSGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              K+  L++++EK +     +++       L              +        ++   
Sbjct: 363 ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLDGSVRAEERFA 422

Query: 100 TIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            I+ +             N     +      + G GLNL  G + ++F+   W+ +    
Sbjct: 423 AIRNFSSQPTKGVVRDDSNPSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA--- 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + R  + G    V    L++Q TI+E++++R   K  +   +   
Sbjct: 479 --DKQALQRTHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFGD 527


>gi|312072073|ref|XP_003138899.1| hypothetical protein LOAG_03314 [Loa loa]
 gi|307765938|gb|EFO25172.1| hypothetical protein LOAG_03314 [Loa loa]
          Length = 1156

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 85  QKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              F    T  +    I  +N +  I L      +   G+NL    + ++ F   W+   
Sbjct: 801 YYRFDGSTTATERERLISRFNRDHNIFLFLISTRAGSLGINLVS-ASRVIIFDASWNP-- 857

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +   V R  + G KR  +VY LI  N+++  +  R   K+ +Q  +++  + + 
Sbjct: 858 ---CHDAQAVCRIYRYGQKRRTYVYRLITDNSMERAIFSRQIGKNGLQQRVVDDKQMDI 913


>gi|315042548|ref|XP_003170650.1| helicase swr1 [Arthroderma gypseum CBS 118893]
 gi|311344439|gb|EFR03642.1| helicase swr1 [Arthroderma gypseum CBS 118893]
          Length = 648

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFN----------SDLARLQKAFPQGRT 93
           K+ + ++  K++ L  +++K       I+V   F                         +
Sbjct: 454 KNKEWMNSGKVEKLCELLDKYIAEGDRILVFSQFTMVMDILEQVLETQKIKFFRLDGKTS 513

Query: 94  LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++     +  ++E   I +      + G G+NL    N ++ F   ++ +      +   
Sbjct: 514 VEDRQSILDAFHEQVDISVFMLSTKAGGAGINL-ACANKVIIFDSSFNPQ-----EDIQA 567

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  R V V  L+ + TI+E +    +TK  +   +
Sbjct: 568 ENRAHRVGQTREVEVVRLVTRGTIEEQIHALGQTKLALDQRV 609


>gi|172041028|ref|YP_001800742.1| hypothetical protein cur_1348 [Corynebacterium urealyticum DSM
           7109]
 gi|171852332|emb|CAQ05308.1| hypothetical protein cu1348 [Corynebacterium urealyticum DSM 7109]
          Length = 343

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 16/163 (9%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKA-NAAPIIVAYHFNSDLA--------RLQKAFPQG 91
           +    + +      K++    ++    +    IV  +F   L         R       G
Sbjct: 143 FMQMRQSFSGPGSAKMERFAELLTDGLDDDKTIVFTYFRGVLDHLMDSLGDRAFGPIAGG 202

Query: 92  RTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +  +    + ++   +   +L A   + G GLN+Q   N +V      +       +E 
Sbjct: 203 VSHQERQQAVDDFTAAEPGAVLVAQINAAGEGLNIQA-ANHVVLIEPQLNPA-----VEA 256

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G    V V+ L+  ++++E +   L TK  + D 
Sbjct: 257 QAIARAHRMGQINPVEVHRLLTPDSVEERLHLLLATKRELFDS 299


>gi|148549817|ref|YP_001269919.1| non-specific serine/threonine protein kinase [Pseudomonas putida F1]
 gi|148513875|gb|ABQ80735.1| Non-specific serine/threonine protein kinase [Pseudomonas putida F1]
          Length = 1082

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 38/221 (17%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL--- 59
             Y + ++++   L  +            +   +     Y  +       +  K++ L   
Sbjct: 858  AYSQ-KQQIEEQLDQKT---SGMLGLLHRLKLICAHP-YSVQPDTRLRDNSPKLQWLIQT 912

Query: 60   -EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------------DPCTI 101
             E I    N   +IV      D+ R  +   Q     +                     I
Sbjct: 913  LESIKRAGNGDKVIVFTELR-DIQRELQHAIQQHFGFRATVINGDTSTSSQSANSRQRLI 971

Query: 102  QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             ++ E     ++     + G G+N+Q   N ++ F+  W+  +     E     R  + G
Sbjct: 972  DQFQELPGFAVIILSTIAVGFGVNVQA-ANHVIHFTRCWNPAK-----EDQATDRAYRIG 1025

Query: 161  FKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNA 197
             ++ V+VYY   ++    T +  + + L  +  +   +L+ 
Sbjct: 1026 QQKDVYVYYPTVRDAAMPTFEATLDELLSKRRALARDMLSG 1066


>gi|297293040|ref|XP_002804188.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like isoform 4 [Macaca mulatta]
          Length = 889

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 702 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 761

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 762 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 816

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 817 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 864


>gi|29829734|ref|NP_824368.1| bifunctional protein [Streptomyces avermitilis MA-4680]
 gi|15824163|dbj|BAB69326.1| putative bifunctional protein [Streptomyces avermitilis]
 gi|29606843|dbj|BAC70903.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
          Length = 701

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 17/153 (11%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTI 101
              K+  L  ++ +   N   ++V  +F   LA +Q+            G    +    +
Sbjct: 508 KSAKLGRLRELVAEAADNGLKVVVFSYFREVLATVQQCLGEPVLGPISGGVPAARRQRLV 567

Query: 102 QEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +       +L A   + G GLNLQ   ++++              +E   V R  + G
Sbjct: 568 DAFAAIDGHAVLLAQIEAGGTGLNLQA-ASVVILCEPQVKPT-----MEHQAVARAHRMG 621

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R V V+ L+A +++D+ +L+ L+ K  + D 
Sbjct: 622 QIRTVQVHRLLATDSVDDRLLRILKNKDRLFDA 654


>gi|148684276|gb|EDL16223.1| stretch responsive protein 278, isoform CRA_b [Mus musculus]
          Length = 1546

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 516 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 560

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 561 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 616

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 617 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 669


>gi|325661424|ref|ZP_08150050.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472373|gb|EGC75585.1| hypothetical protein HMPREF0490_00784 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 493

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y+    ++   +       F   +K +K  ++ +G V   +     +    K   LE 
Sbjct: 299 KYYNDILNDIKEHIN--EWSKFEFTAKLMKLREVVSGFVI-QKNGDVTDFKTNKDNILED 355

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPAS 118
            + +     +IV   F  ++ +L + F       K       I+ +  G I LLFAHP  
Sbjct: 356 TLNEIGDKQVIVWCQFIHEIEKLAEKFDGTALTSKTKNRDDIIRSFKNGDIKLLFAHPKL 415

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G         + ++SL +  EE +Q  +RI      + G         L  +NTID+
Sbjct: 416 LGKGATFTNCTYNI-YYSLSFSYEEFKQSQDRI-----HRIGQANKCTYIILQGKNTIDK 469

Query: 179 LVLQRLRTKSTIQDLL 194
            +   L+ K    D L
Sbjct: 470 RIYNSLQRKGNAVDEL 485


>gi|229163175|ref|ZP_04291130.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           R309803]
 gi|228620238|gb|EEK77109.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           R309803]
          Length = 560

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ N   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIQEINDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|255078968|ref|XP_002503064.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518330|gb|ACO64322.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1866

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 22/160 (13%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGK 108
              + ++  +   ++   FNS L+             +          +D        +  
Sbjct: 1667 RKMRDEDGSNKALIFSQFNSTLSWLQERLPEEGFGFRTISGSMPLKQRDQAIQAFQKDPP 1726

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      S   G+NL      +      ++    +       + R  + G +R V V 
Sbjct: 1727 TTVFLLSMRSGAVGINLTS-ATHVFLVEPAFNPALTE-----QAIGRSWRMGQRREVRVK 1780

Query: 169  YLIAQNTIDELVLQRLRTKSTI-----QDLLLNALKKETI 203
            +LI  N+I+  + + L  +           ++ A K+  +
Sbjct: 1781 HLIVANSIESNIRKLLAAREETKPEDEAADVIEAEKQRGM 1820


>gi|219883149|ref|YP_002478311.1| helicase domain protein [Cyanothece sp. PCC 7425]
 gi|219867274|gb|ACL47612.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 894

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 12/194 (6%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           + E    L    +   N+ +   +  ++ +       E+      + K     +I     
Sbjct: 436 EEEYLAKL----VNLSNAITSETRIRRILDLLKGDFAERSVLFFTEYKATQSLLINALIQ 491

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                     N D           R        IQ +NEG+         + G G++LQ 
Sbjct: 492 HYGETAVTFINGDQEVHNVNGRTIRCP--RERAIQLFNEGEAR-FLVSTEAAGEGVDLQQ 548

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + L+   + W+     Q + R+      + G    V V  L   +TI+  + +RL  K
Sbjct: 549 NCHTLIHVDIPWNPMRLHQRVGRL-----YRYGQTHKVEVVTLRNPDTIEATIWERLEEK 603

Query: 188 STIQDLLLNALKKE 201
                L L+ + +E
Sbjct: 604 MQRIQLALSGVMEE 617


>gi|242793636|ref|XP_002482204.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218718792|gb|EED18212.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1788

 Score = 75.6 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 69/160 (43%), Gaps = 7/160 (4%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
               +      +K++ +E ++  E I+  + + P +         + ++     G T  K 
Sbjct: 1373 DPKHSHRADIFKKIVEESVRLEEKILCFSQSIPTLDYLERLLRSSGVRFYRLDGSTAVKN 1432

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++ +N+G+I +      + G GLN+  G N ++ F   ++        E   V R 
Sbjct: 1433 RQKDVKSFNQGEISVYLISTRAGGLGLNIT-GANRVIIFDFSFNPT-----WEEQAVGRA 1486

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G ++ V+VY  +A  T +E+V  +   K+ +   +++
Sbjct: 1487 YRLGQEKPVYVYRFLAGGTYEEVVHNKSIFKTQLAMRVVD 1526


>gi|213405915|ref|XP_002173729.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
 gi|212001776|gb|EEB07436.1| DNA repair protein rad5 [Schizosaccharomyces japonicus yFS275]
          Length = 1108

 Score = 75.6 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------- 97
             +H        +K L  + E+     +++   F + L  +                    
Sbjct: 934  HQHQSIKLTSLLKHLRRVFEEHKDEKVVIFSQFTTFLDYISTLLHSQGIEHTRFDGSMSQ 993

Query: 98   ----PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                       +     +L     + G GLNL    N +     WW        +E   +
Sbjct: 994  IARANALEHFRDSKTSNVLIVSLKAGGVGLNLT-CANHVYLMDPWWSWS-----VEAQAL 1047

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G ++AV V   I +++++E +L+    K+ I   L
Sbjct: 1048 DRVHRLGQEKAVHVTRFIIRDSVEERMLKIQERKNFIAGTL 1088



 Score = 34.3 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 3/34 (8%), Positives = 6/34 (17%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
                 S  ++  Q          +    E    
Sbjct: 784 NYTTILSLLLRLRQACCHPKLLLHKGSEAENASS 817


>gi|169620129|ref|XP_001803476.1| hypothetical protein SNOG_13266 [Phaeosphaeria nodorum SN15]
 gi|160703967|gb|EAT79150.2| hypothetical protein SNOG_13266 [Phaeosphaeria nodorum SN15]
          Length = 1106

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                 R  +   +    ++D        +  I ++     + G GLNL    N +     
Sbjct: 972  KDHQHRYCRLDGRMSRQNRDESMRVFREDPTIIVMLVSIGAGGLGLNLTT-ANKVFMMEP 1030

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             ++     Q ++R+      + G  R V +   I  N+ +E +++  + K  + DL L
Sbjct: 1031 QFNPAAEAQAVDRV-----HRLGQDREVMIKRFIMDNSFEEKMVELQQKKKKLADLTL 1083


>gi|70951871|ref|XP_745142.1| DNA repair protein rad54 [Plasmodium chabaudi chabaudi]
 gi|56525372|emb|CAH78699.1| DNA repair protein rad54, putative [Plasmodium chabaudi chabaudi]
          Length = 1032

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              I+ K N    +                  G ++ K    I ++ N   I +      
Sbjct: 570 YMEILCKENHYKFVR--------------LDGGISIKKRHKVISDFTNTDDIFIFLLSSK 615

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL    N L+     W+        ++  + R  + G K+  ++Y L    TID
Sbjct: 616 SGGCGINL-ISSNRLILLDPDWNPAN-----DKQALARVWREGQKKICYIYRLFCTGTID 669

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E V QR  +K  +  +++
Sbjct: 670 EKVYQRQISKDGLSSMIV 687


>gi|121716002|ref|XP_001275610.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119403767|gb|EAW14184.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1179

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              ++       +  +  +L A   + G GLNL    + +      ++     Q I+R+  
Sbjct: 1061 PARNRALEDFHSNNETTILLATIGAGGVGLNLTS-ASKVYIMEPQYNPAAVAQAIDRV-- 1117

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                + G  R V     I + +I+E + +  + K  + D+ +N  K
Sbjct: 1118 ---HRLGQTRDVTTVQFIMKGSIEEKIFELAKRKQQLADMSMNRGK 1160


>gi|134287906|ref|YP_001110070.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132556|gb|ABO60182.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 682

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 50  EVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFP-----------QGRTLDKD 97
           E+   K++ +  +I+  N    +++   F  ++A  ++A                +  + 
Sbjct: 509 ELESYKVRPIVEMIKDLNGDDKVLLFCEFKENVALFKQALDEVGIGYSVLTGDMSSPTRR 568

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I E+  +    +     A+ G G NL    N +   SL W               R 
Sbjct: 569 QRAIDEFQSDPLKRVFITTTAAGGVGHNLTA-ANYVFLVSLPWTPGL-----AAQAEDRA 622

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + G  R V V   + +NTID  +++  R K +I   +L+  + E +
Sbjct: 623 FRNGQLRLVIVLIPLVENTIDMDLVEMHRNKQSIAAEILDPEEAERL 669


>gi|145488703|ref|XP_001430355.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397452|emb|CAK62957.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1100

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 18/170 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKA 87
                 K        K+  L  +I K  +    II+       L                
Sbjct: 755 RMLFPNKKLLIYDCGKMNTLVSLIYKLKSQNHKIIIFTQMTKMLDLFEAVLSLSKISYLR 814

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++     ++ +N+  I    +   S G GLNL  G + ++F+   W+       
Sbjct: 815 LDGSTPVEMRQKIVESFNQLNITCFISSTRSGGIGLNLT-GADTVIFYDTDWNPA----- 868

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++    R  + G  R V +Y LI  +TI+E +  +   K  + D ++ +
Sbjct: 869 MDKQAQDRCHRIGQVRPVTIYRLITNSTIEENIFLKSLQKRQLDDFVMQS 918


>gi|237836947|ref|XP_002367771.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|211965435|gb|EEB00631.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
 gi|221482002|gb|EEE20368.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii GT1]
 gi|221505079|gb|EEE30733.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
           gondii VEG]
          Length = 693

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 55  KIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTI 101
           K++ LE ++     ++   I++  +F S L  ++                  +      +
Sbjct: 522 KLQFLENLLLSIRSSSNDKIVIVSNFTSTLDNIEIFMQAKGYSFLRLDGSTAVKDRTGLV 581

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + +NE K          + G GLNL  G N LV     W+    Q       + R  + G
Sbjct: 582 KTFNESKECFAFLLSSKAGGVGLNL-IGANRLVLLDPDWNPANDQ-----QALARVWRPG 635

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               V++Y L+   TI+E +LQR   K+T+  
Sbjct: 636 QINPVYIYRLVGARTIEEKILQRQAYKATLAQ 667


>gi|326924514|ref|XP_003208472.1| PREDICTED: LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
            [Meleagris gallopavo]
          Length = 2479

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 24/200 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-----I 63
            ++   D   E +E         + L++A      +E      V  + + +L++I     +
Sbjct: 1991 KDFVTDADAEVLEHSGKMVLLFEILRMA------EELGDKVLVFSQSLISLDLIEDFLEL 2044

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGKI---PLLFAHP 116
                         +  +    +           T        +E+N+       L     
Sbjct: 2045 ANREKTDKEKPPIYKGEGKWFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIIST 2104

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   G+NL    N ++ F   W+        +   + R  + G  + VFVY  +AQ T+
Sbjct: 2105 KAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQSKPVFVYRFLAQGTM 2158

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            ++ +  R  TK ++   +++
Sbjct: 2159 EDKIYDRQVTKQSLSFRVVD 2178


>gi|330840974|ref|XP_003292481.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
 gi|325077256|gb|EGC30980.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
          Length = 928

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 22/170 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLA----------RLQKAFP 89
             K ++  +  K+  ++ ++ K     +   +++  ++   L                  
Sbjct: 601 NPKVFQPQYSSKLLFVDRLLTKIRDSKSGDKVVIISNYTQTLEVLAIMCKTRGYAYFQLD 660

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 K    +  +N+ K P         + G GLNL  GGN LV F   W+       
Sbjct: 661 GSTPNAKRQQLVDLYNDPKRPEFAFLLSSKAGGVGLNL-IGGNHLVLFDADWNPAN---- 715

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +   + R  + G K+ V +Y      TI+E + QR  TK  +   +   
Sbjct: 716 -DAQSMARVWREGQKKVVSIYRTFTTGTIEEKIFQRQLTKQALSTSITEG 764


>gi|301604464|ref|XP_002931858.1| PREDICTED: transcriptional regulator ATRX [Xenopus (Silurana)
            tropicalis]
          Length = 2268

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFS 136
                         +        +E+N+       L      +   G+NL    N ++ F 
Sbjct: 1852 FRNIDYYRLDGQTSPQTRKKWAEEFNDSTNIRGRLFLISTKAGSLGINLVA-ANRVIIFD 1910

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+        +   + R  + G  + VFVY  +AQ T++E +  R   K ++   +++
Sbjct: 1911 ASWNPS-----YDIQSIFRVYRFGQIKPVFVYRFLAQGTMEEKIYDRQIAKQSLSFRVID 1965


>gi|301062743|ref|ZP_07203355.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300443150|gb|EFK07303.1| SNF2 family N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 896

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 18/191 (9%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           ++        V+   + +     D + H      E    ++ ++ ++    +I +     
Sbjct: 569 MDIRRIQELLVRMRMVCDSTYLIDRKTHVSPKLTELASVIDELVIESKRKMVIFSEWTTM 628

Query: 80  DLARLQKAFPQGRTL---------DKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGG 129
                +     G             K    I E+ N     +      + G GLNLQ   
Sbjct: 629 TFLIARHLSEVGIPFVELSGKIPVKKRQSLIDEFTNNPDCRVFL-STDAGGTGLNLQA-A 686

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTKS 188
           + +V F L W+  +  Q I R+      + G K     V   I + T++E +   ++ K+
Sbjct: 687 DCVVNFELPWNPAKLNQRIGRV-----SRIGQKSQCINVVNFICKGTVEEKIFAGIQLKT 741

Query: 189 TIQDLLLNALK 199
            +   +    +
Sbjct: 742 ELFKGVFEGGE 752


>gi|321262907|ref|XP_003196172.1| DNA repair protein RAD5 [Cryptococcus gattii WM276]
 gi|317462647|gb|ADV24385.1| DNA repair protein RAD5, putative [Cryptococcus gattii WM276]
          Length = 1359

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 19/210 (9%)

Query: 7    FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +R +         E  N ++K              +      +    +   +E +  + 
Sbjct: 1143 LKRAVRKKYIRPPGEKLNLSTKMQFLHDELLRFSKKNPHSAHYDPFSLEGDDVEEMDAEG 1202

Query: 67   NA--APIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQE-WNEGKIPLLF 113
                   IV   + + L R+     +            T D+    I    ++  + +L 
Sbjct: 1203 KPVVTKSIVFSQWTTMLDRIADMLDETNIRYARLDGTMTRDERSRAIDALRHKKNVEVLL 1262

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                + G GLNL    +       +W+     Q I+RI      + G  R V    L+ +
Sbjct: 1263 VSTRAGGVGLNLT-VASRCYLVDPYWNPSVESQAIDRI-----HRMGQTRPVVAIKLMIK 1316

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            ++I+E + +  + K+ +  L L  + ++ +
Sbjct: 1317 DSIEEKLDKIQKKKAELAQLSLKNMSRKEL 1346


>gi|310641398|ref|YP_003946156.1| helicase protein [Paenibacillus polymyxa SC2]
 gi|309246348|gb|ADO55915.1| Helicase protein [Paenibacillus polymyxa SC2]
          Length = 630

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           + K +    +I K N   +I+   +            D       +  G    +    + 
Sbjct: 376 NSKAEKALELIRKMN-EKVIIFTEYRATQEYLLNYFRDRGLSAVPYRGGMNRGRKDWMMD 434

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+I ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G K
Sbjct: 435 LFR-GRIQVMIAT-EAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQK 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 HDVNIFNLSTTGTIEEHILHLLHEKINMFEMVIGGL 522


>gi|156393888|ref|XP_001636559.1| predicted protein [Nematostella vectensis]
 gi|156223663|gb|EDO44496.1| predicted protein [Nematostella vectensis]
          Length = 814

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 97  DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  +N+       L      + G G+NL    N ++ F   W+     Q I R+  
Sbjct: 617 RQRWADIFNDPDNKTARLFLISTKAGGLGINLVA-ANRVIVFDASWNPSHDVQSIFRV-- 673

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  +AV+VY  ++Q T++E V  R   K +I + +++
Sbjct: 674 ---YRFGQTKAVYVYRFLSQGTMEERVYDRQVAKLSISERVVD 713


>gi|157126395|ref|XP_001654617.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108873303|gb|EAT37528.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 2905

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 44/184 (23%)

Query: 52   HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK------------- 96
               K++ +  I+++        ++   F + L  ++    +    +K             
Sbjct: 1797 PSGKLRIMFEILKQCQERGEKCLIFSAFVAVLNVVEHFMTKIHNREKESMADVYGYSTFK 1856

Query: 97   --------------------DPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILV 133
                                    I  +N+    +         + G G+NL  G N ++
Sbjct: 1857 GPWEPGKDYYRLDGKTQKNLRHRMITSFNDPSNKRTKCFLISAKAGGQGINL-IGANRVI 1915

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 W+    QQ I RI      + G K+  FVY L+A  T++E V  R  TK  +   
Sbjct: 1916 ILDTSWNPSNDQQNIFRI-----FRLGQKKKCFVYRLLAMGTMEEKVYSRSVTKQAMSFR 1970

Query: 194  LLNA 197
            +++ 
Sbjct: 1971 VVDE 1974


>gi|312072535|ref|XP_003139110.1| hypothetical protein LOAG_03525 [Loa loa]
 gi|307765725|gb|EFO24959.1| hypothetical protein LOAG_03525 [Loa loa]
          Length = 770

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           R            K      ++N+       L+     +   G N+    N +V F   W
Sbjct: 398 RDYMVIDGQVQTSKRHEIQTKFNDPNNLRARLMLISTRAGSLGTNMVA-ANRVVIFDACW 456

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 457 NPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 509


>gi|62733578|gb|AAX95695.1| SNF2 family N-terminal domain, putative [Oryza sativa Japonica
           Group]
 gi|108710803|gb|ABF98598.1| Swi2/Snf2-related protein DDM1, putative [Oryza sativa Japonica
           Group]
          Length = 811

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 60/168 (35%), Gaps = 13/168 (7%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           K L+        +   +       K+     +I       + +  ++             
Sbjct: 565 KLLEQCGKFQLLNRLLNLLLARKHKV-----LIFSQWTKVLDIIEYYLETKGLQVCRIDG 619

Query: 91  GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              L++    I E+N+    + +      + G G+NL    +  + +   W+ +     +
Sbjct: 620 SVKLEERRRQIAEFNDLNSSMNIFILSTRAGGLGINLTS-ADTCILYDSDWNPQ-----M 673

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   + R  + G  R V VY L   ++++  ++++   K  ++ +++ 
Sbjct: 674 DLQAMDRCHRIGQTRPVHVYRLATSHSVEGRIIKKAFGKLRLEHVVIG 721


>gi|66812364|ref|XP_640361.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60468377|gb|EAL66383.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1640

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 44/221 (19%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y++ +R+   +L               +  QL        E K   ++       ++ 
Sbjct: 1412 QLYNQTERQFQNELH-------------NRLNQLIERQRENQEAKQMSKIDSLFSTKVKT 1458

Query: 62   IIEKAN----------AAPIIVAYHFNSDLA---------------RLQKAFPQGRTLDK 96
            ++                  ++   + S L                   +   +     K
Sbjct: 1459 LLGDIQNDLIDNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQK 1518

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            D    Q   +  + ++     S G GLNL    N +     WW+              R 
Sbjct: 1519 DKAIKQLNEDDDVRVMLVSLKSGGVGLNLTR-ANRVYMVDPWWNEASEV-----QAEGRV 1572

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G  R VFV   I  N+I+  +L+   +K+ I + LL+ 
Sbjct: 1573 HRIGQTREVFVKRYIMNNSIEIRILELQESKNEIANALLSD 1613


>gi|147845330|emb|CAN81246.1| hypothetical protein VITISV_014031 [Vitis vinifera]
          Length = 716

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 100 TIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            I+E+N+      +      + G G+NL    +  + +   W+ +     ++   + R  
Sbjct: 528 LIEEFNDMNSNCRVFLLSTRAGGLGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCH 581

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  + V VY L    +I+  +L+R  +K  ++ +++ 
Sbjct: 582 RIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVIG 620


>gi|331248703|ref|XP_003336974.1| hypothetical protein PGTG_18553 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309315964|gb|EFP92555.1| hypothetical protein PGTG_18553 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 711

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 27/179 (15%)

Query: 26  ASKTVKCLQLANGAVYYDE----EKHWKEVHDEKIKALEVIIEKANA-------APIIVA 74
             +     Q  N  ++  +    +K+W+     K+  L   +E+             +V 
Sbjct: 532 FKQLTMIRQFCNHPIFARDEIPHQKNWRWQDSAKLVHLVDNLERFLRGGRGILRPKAVVF 591

Query: 75  YHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
             F + L          ++   +     + K    +  +  +    +L     + G G++
Sbjct: 592 SSFVAFLEIIEKALKEKQMGCTWLMTLGIAKRDENLARFRTDPNCNILLGSIQAAGVGID 651

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           L      +      W+       +E   V R  + G    V VY    Q +++  + Q 
Sbjct: 652 L-RCAQNVYMMEPNWNPA-----MENQAVDRLYRLGQTNEVHVYRYYVQGSLEMNIHQA 704


>gi|115930771|ref|XP_001182799.1| PREDICTED: similar to MGC108253 protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1302

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA 87
              +L +      E +  +++     K + L+ ++   K   + +++   F   L  +Q+ 
Sbjct: 1120 LHRLCHEYSGLREYRLDQDLVTQSGKFQLLDKMLADLKEQGSRVLLFSQFVMVLDIVQEY 1179

Query: 88   ----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                            + +    I ++N    + +      + G G+NL    N ++   
Sbjct: 1180 LKIRGHKFVRMDGQTPVAERAQLIDKFNKNDSVFIFMLSTRAGGVGINLTA-ANTVILHD 1238

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + ++        ++    R  + G  R V V  L+++ TI+E +L   + K  ++  + +
Sbjct: 1239 IDFNP-----YNDKQAEDRCHRVGQTREVSVIRLVSKQTIEEGMLSCAKYKLKLEKQMTS 1293

Query: 197  ALKKE 201
             +  E
Sbjct: 1294 GISGE 1298


>gi|67624283|ref|XP_668424.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis TU502]
 gi|54659629|gb|EAL38197.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis]
          Length = 807

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 77/211 (36%), Gaps = 30/211 (14%)

Query: 2   KQYHKFQ-RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
           K Y + +  +    L    I          + L + N  +        + +     K++ 
Sbjct: 599 KGYSRIKVEQYITQLCDYEIHQ-----LVSRLLIVKNSPLLERFRIDDELIINGSCKLRK 653

Query: 59  LEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------------KDPCTIQ 102
           +  II+     N    ++  H    L  +++       +              +    I+
Sbjct: 654 MNEIIQSTVIENKEKCLIFCHHTMLLDIIEEYIKIKYNMSDFYLRLDGTTPILERQNMIE 713

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   ++PL      + G GLNL    + ++   L ++ +     IE+    R  + G  
Sbjct: 714 KFQTTQVPLFLLSTKAAGQGLNLT-VASSVIMMDLDYNPQ-----IEKQAEDRVHRIGQS 767

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           + V ++ L+ ++TI+E +    ++K T+ + 
Sbjct: 768 KQVKIFKLVCKDTIEENIFNCCQSKLTLDNA 798


>gi|116326115|ref|YP_803440.1| global transactivator-like protein [Anticarsia gemmatalis
           nucleopolyhedrovirus]
 gi|112180853|gb|ABI13830.1| global transactivator-like protein [Anticarsia gemmatalis
           nucleopolyhedrovirus]
          Length = 498

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 38/226 (16%)

Query: 3   QYHKFQ-------RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------- 48
            Y   +        +       +     +      +  Q+            +       
Sbjct: 264 VYDTLKSESQRAYDDAVAGGGDKTRNMQDVLWLLCRLRQMCCHPALTKCAHMFADQAIIF 323

Query: 49  -KEVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
             +    K + +  I+++        +++   +   L  + K   Q              
Sbjct: 324 EPQYVSSKCRRVLEIVQQVLDTPNDKVVLVSQWVEFLYIVAKLLQQRGIPILLYTGQLRV 383

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++      ++N  +    +L       G GLNL  GGN ++     W+ +     IE   
Sbjct: 384 EERTAVENQFNAADSPYRVLLMSINCGGVGLNLT-GGNHIIMLEPHWNPQ-----IELQA 437

Query: 153 VTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
            +R  + G K+  +VY ++    N+I+  +  R   K T  + + +
Sbjct: 438 QSRIHRMGQKKQTYVYKMLNDEDNSIERYMKMRQDNKLTFVNKVFD 483


>gi|67763824|ref|NP_033236.2| helicase-like transcription factor isoform 1 [Mus musculus]
 gi|60390920|sp|Q6PCN7|HLTF_MOUSE RecName: Full=Helicase-like transcription factor; AltName:
           Full=P113; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3; AltName:
           Full=TNF-response element-binding protein
 gi|34785644|gb|AAH57116.1| Helicase-like transcription factor [Mus musculus]
 gi|37590668|gb|AAH59240.1| Helicase-like transcription factor [Mus musculus]
 gi|148702945|gb|EDL34892.1| mCG123397, isoform CRA_c [Mus musculus]
          Length = 1003

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++                    K   +IQ
Sbjct: 830 NALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 889

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 890 RFQNTEAGSPTIMLLSLKAGGVGLNLCA-ASRVFLMDPAWNPAAEDQCFDRC-----HRL 943

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V +   I +++++E +L+   TK  +        K +
Sbjct: 944 GQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTD 985



 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 18/80 (22%), Gaps = 7/80 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   + E    +        + A   +     ++  Q+                    
Sbjct: 670 KIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT-NGMSSSGPSRS 728

Query: 56  IKALEVIIEKANAAPIIVAY 75
               E+         II++ 
Sbjct: 729 DTPEELRKMLIEKMKIILSS 748


>gi|22328039|ref|NP_201200.2| CHR24 (chromatin remodeling 24); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana]
 gi|22655364|gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana]
 gi|332010436|gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana]
          Length = 1090

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 100
             K+  +  ++E        +++       L  +Q                        T
Sbjct: 731 SCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKT 790

Query: 101 IQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           ++E+ EG + P+        G GL L    + ++     W+     Q ++R       + 
Sbjct: 791 VEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AYRI 844

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           G  + V VY L+   T++E + ++   K  +        ++
Sbjct: 845 GQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQ 885


>gi|324501944|gb|ADY40860.1| Helicase ARIP4 [Ascaris suum]
          Length = 1138

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 7/117 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +    F            I  +N+  ++ L      +   G+NL    N ++ F   W+
Sbjct: 817 NQTYLRFDGSTPAIDREKLINRFNDDPQVYLFLISTRAGSLGINLVA-ANRVIIFDASWN 875

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   +   V R  + G K+  F+Y L+  N++++ +  R   KS +Q  +++ 
Sbjct: 876 P-----CHDAQAVCRIYRYGQKKRTFIYRLVMDNSMEKGIFNRQIGKSGLQQRVVDD 927


>gi|196006111|ref|XP_002112922.1| hypothetical protein TRIADDRAFT_25151 [Trichoplax adhaerens]
 gi|190584963|gb|EDV25032.1| hypothetical protein TRIADDRAFT_25151 [Trichoplax adhaerens]
          Length = 678

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 32  CLQLANGAVYYDEEKHWKEV--HDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA 87
             QL N      +    +E+     KIK L+ ++   K     +++   F   L  ++  
Sbjct: 477 LHQLCNEFHVLSKYLMPQELLFDSGKIKCLDRLLPLMKERGDRVLLFSQFVMVLDIIECY 536

Query: 88  FPQG----------RTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFF 135
                           +      I ++N+ +    +      + G G+NL    N+++  
Sbjct: 537 IQYRGYSYLRMDGQTPIKDRLDLIDQFNDSEADKFIFLLSTKASGLGINLTS-ANVVILH 595

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + ++        ++    R  + G  + V VY LI  +TID+ +LQ    K  ++  +
Sbjct: 596 DIDFNP-----HNDKQAEDRCHRVGQDKDVIVYRLICPDTIDQTMLQFCDNKLHLEKSV 649


>gi|289614685|emb|CBI58522.1| unnamed protein product [Sordaria macrospora]
          Length = 1159

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            I  L  + ++      +V   F S L  +                  +       + E+ 
Sbjct: 993  ISHLRALRQEHPKMKSLVISQFTSFLTLISSALARHKIAFLRLDGSMSQKARAAVLTEFQ 1052

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                  +L     + G GLNL      +     WW        +E   + R  + G +  
Sbjct: 1053 ASNKFCVLLLSLKAGGVGLNLTN-AKRVYMMDPWWSFA-----VEAQAIDRVHRMGQEDE 1106

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V VY  I + +++  +L+    K  I     +++  +K    +
Sbjct: 1107 VRVYRFIVKQSVEMRMLRVQERKKFIATSLGMMSDEEKRVQRI 1149


>gi|168027824|ref|XP_001766429.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162682338|gb|EDQ68757.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1343

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +  ++  IPL        G GL L  G N +V     W+     Q ++R      
Sbjct: 756 RVAVWEFQSDNDIPLFLLTSQVGGLGLTLT-GANRVVIVDPAWNPSTDNQSVDR-----A 809

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G K+ V VY L+   TI+E + ++   K  +  
Sbjct: 810 YRIGQKKNVVVYRLMTCGTIEEKIYRKQVFKGHLMK 845


>gi|23193481|gb|AAN14535.1|AF459085_1 SNF2P [Hordeum vulgare]
          Length = 882

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 41/231 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL       G +    +  +  V+  +  +    +        EE      
Sbjct: 303 KIYLSVLRKELQTLLSFTGGSSRHQSLQNIVVQLRKACSHPYLFSGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++++EK +     +++       L  LQ          +             
Sbjct: 363 ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLDGSVRAEERFA 422

Query: 98  ----------PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        +++ N      +      + G GLNL  G + ++F+   W+ +    
Sbjct: 423 AIRNFSSQATKGVVRDDNNPSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA--- 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + R  + G    V    L++Q TI+E++++R   K  +   +   
Sbjct: 479 --DKQALQRTHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFGD 527


>gi|156058402|ref|XP_001595124.1| hypothetical protein SS1G_03212 [Sclerotinia sclerotiorum 1980]
 gi|154701000|gb|EDO00739.1| hypothetical protein SS1G_03212 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1142

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW- 104
            +  L+ + +++ +   +V   F S L+ ++                         + ++ 
Sbjct: 978  LTNLKTLRKESPSTKSVVFSQFTSFLSLIEPALTRSSIPFLRLDGSMAQKARAAVLTQFK 1037

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N  K  +L     + G GLNL      +     WW        +E   + R  + G    
Sbjct: 1038 NSEKGVVLLLSLRAGGVGLNLT-MAKRVFMMDPWWSFA-----VEAQAIDRVHRMGQVDE 1091

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V V   I + +++E +L+    K  I     +++  +K+   +
Sbjct: 1092 VLVKRFIVKGSVEERMLRVQERKKFIASSLGMMSDEEKKLQRI 1134



 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 3/51 (5%), Positives = 16/51 (31%), Gaps = 6/51 (11%)

Query: 2   KQYHKF----QRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEEK 46
           + Y       +R    +++   +     +  ++ ++  Q     +    + 
Sbjct: 780 EVYDHIFTRAKRTFSANIEAGTVLKAYTSIFAQILRLRQSCCHPILTRNQT 830


>gi|171685718|ref|XP_001907800.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942820|emb|CAP68473.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1877

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 65/192 (33%), Gaps = 10/192 (5%)

Query: 9    RELYCDLQGENIEAFNSASKT---VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            +    + + E I   +  S+      C  + N A  Y        + + +    + +I  
Sbjct: 1221 KSGKSEDEDELILPQDILSELLTPTTCRDIDNDAHSYKIVALMFLLGEFRKVGDKALIFT 1280

Query: 66   ANAAPI-IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
             +   +  +   F       Q+         +     +  +     +      + G GLN
Sbjct: 1281 QSIPALDFLESIFKRRQIGYQRLDGHTPINTRQASIKKFNSNDSADVYLISTKAGGVGLN 1340

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            + YG N ++     +   + Q       + R  + G  + V+VY+L+   T +  + +  
Sbjct: 1341 I-YGANRVIILDFKYSPTDEQ-----QAIGRAYRLGQTKPVYVYWLMIGGTFEATIHKSA 1394

Query: 185  RTKSTIQDLLLN 196
              K+ +   +++
Sbjct: 1395 IFKTQLASRVID 1406


>gi|156348349|ref|XP_001621816.1| hypothetical protein NEMVEDRAFT_v1g1681 [Nematostella vectensis]
 gi|156208092|gb|EDO29716.1| predicted protein [Nematostella vectensis]
          Length = 147

 Score = 75.6 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHP 116
              +++   + S L        +  T             ++        +    L F   
Sbjct: 20  KQKVLIFSSYTSHLKIYTDWCDKNNTPYSLLTGSTKIADRESEVANFQKDDNKLLFFISL 79

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNL    + ++    WW+        E   + R  + G +  V V   IA++TI
Sbjct: 80  KAGGTGLNLTK-ASYVILLDPWWNP-----FAELQAIGRAHRIGQENQVNVVRFIAKDTI 133

Query: 177 DELVLQRLRTKSTI 190
           +E + Q  ++K  I
Sbjct: 134 EEKISQLQQSKKEI 147


>gi|241554086|ref|YP_002979299.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240863392|gb|ACS61054.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 493

 Score = 75.2 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 24/201 (11%)

Query: 2   KQYHKFQRELYCDLQGENI----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y +F+ EL   +  +      +A +   + ++ +Q+A+     D+          K++
Sbjct: 262 EIYAQFRDELAAIVVRQGRPVLDDAEDILKRLLRLVQVASNPAMVDQAYRSVP---GKMR 318

Query: 58  ALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTIQEWN-E 106
           AL+ ++         I+V  +F  +   L +            G  + K    +  +  +
Sbjct: 319 ALDELVTSAIDAREKIVVWTNFTMNAEALCRHLGEFGAVLVHGGIEIAKREEALTAFKTD 378

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  +L A P +   GL L    N  VF+   + L+++ Q  +RI      +    +  F
Sbjct: 379 PQTRVLVATPGAAKEGLTLT-VANHAVFYDRSFSLDDYLQAQDRI-----HRISQDKPCF 432

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
           V  LI  +T+D  V   L  K
Sbjct: 433 VTNLIGMDTVDAWVDALLSAK 453


>gi|299746164|ref|XP_002911013.1| hypothetical protein CC1G_15553 [Coprinopsis cinerea okayama7#130]
 gi|298406931|gb|EFI27519.1| hypothetical protein CC1G_15553 [Coprinopsis cinerea okayama7#130]
          Length = 828

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-----PIIVAYHFNSDLAR------- 83
                    +   +     KI+ +  ++ K +         I+   F S L         
Sbjct: 627 CVDLAKQARQAELERPTSAKIRMVLKLLAKIDRDSNGEEKTIIFSQFTSMLDLIQPFLEE 686

Query: 84  ----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                 +        D++    +  N     ++     +   GLNL    N ++   LWW
Sbjct: 687 KGIKYTRYDGSMAPKDREAALEKIRNSKSTRVILISFKAGSTGLNLTA-CNNVILVDLWW 745

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +        E     R  + G KR V++Y L    T+++ +L     K  +    L+  K
Sbjct: 746 NPAL-----EDQAFDRAHRYGQKRDVYIYKLKVDATVEDRILALQDKKRALAAAALSGDK 800

Query: 200 KETIHV 205
            + + +
Sbjct: 801 IKNMRL 806


>gi|299756086|ref|XP_001829080.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
 gi|298411516|gb|EAU92715.2| DNA repair protein RAD5 [Coprinopsis cinerea okayama7#130]
          Length = 1494

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 70   PIIVAYHFNSDLARLQK-------AFPQGRTLDKDPCTIQEWN----EGKIPLLFAHPAS 118
              +V   + + L +++         + +     K    I+  +    +    +L     +
Sbjct: 1111 KTVVFSQWTTMLDKVEDALEVAGIRYDRLDGTMKREERIKAMDALKFDPGCEVLLVSLKA 1170

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL      +     +W+     Q ++RI      + G  R V    LI + +I+ 
Sbjct: 1171 GGVGLNLTA-AQRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVQTVKLIIEGSIEA 1224

Query: 179  LVLQRLRTKSTIQDLLL--NALKKETI 203
             +L+  + K+ + ++ L  N  K E +
Sbjct: 1225 RLLEVQKKKTELANMTLGQNVSKSEIL 1251


>gi|170585466|ref|XP_001897504.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158595051|gb|EDP33626.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1327

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            R            K      ++N+       L+     +   G N+    N +V F   W
Sbjct: 978  RDYMVIDGQVQTSKRHEIQTKFNDPNNLRSRLMLISTRAGSLGTNMVA-ANRVVIFDACW 1036

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +        +   + R  + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 1037 NPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1089


>gi|145475913|ref|XP_001423979.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391041|emb|CAK56581.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1079

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 18/170 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL----------QKA 87
                 K        K+  L  +I K  +    II+       L                
Sbjct: 755 RMLFPNKKLLIYDCGKMNTLVSLIYKLKSQNHKIIIFTQMTKMLDIFEAVLSLSKISYLR 814

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++     ++ +N+  I    +   S G GLNL  G + ++F+   W+       
Sbjct: 815 LDGSTPVEMRQKIVESFNQLNITCFISSTRSGGIGLNLT-GADTVIFYDTDWNPA----- 868

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +++    R  + G  R V +Y LI  +TI+E +  +   K  + D ++ +
Sbjct: 869 MDKQAQDRCHRIGQVRPVTIYRLITNSTIEENIFLKSLQKRQLDDFVMQS 918


>gi|319642264|ref|ZP_07996923.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|317386120|gb|EFV67040.1| helicase domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 559

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 21/207 (10%)

Query: 2   KQYHKFQRELYCDL------QGENIEAF---NSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   +R+L   L        E IE         +     Q++            + V 
Sbjct: 342 KEYIDAERDLIMYLQKYKEADDEKIEKALRGEVMVRINILRQIS---ARGKVRDVIEFVK 398

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D +    ++I+  +      V     S          +    +K        N  K  ++
Sbjct: 399 DFRENGKKIILFCSLHE---VVDQLKSYFPTAVSVTGRDSQDEKQRAVDSFQNNPKTDII 455

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GL L    N + F    W   +  Q  +R       + G K +V  YY + 
Sbjct: 456 ICSIKAAGVGLTLTASSN-VAFVEFPWTYADCCQCEDR-----AHRIGQKDSVTCYYFLG 509

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
           + TIDE V + ++ K  I   +  + +
Sbjct: 510 RRTIDEKVCRIIQNKKAIAKDVTGSTE 536


>gi|115438126|ref|XP_001217986.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114188801|gb|EAU30501.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 1735

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             R          +       +++N +  + +      + G GLN+  G N ++ +   + 
Sbjct: 1379 NRKYCRLDGKTPVVSRQAATKKFNTDANLEVYLISTRAGGLGLNI-PGANRVIIYDFSFS 1437

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                    E   + R  + G  + V+VY  I+  T +E++  +   K+ +   +++  KK
Sbjct: 1438 P-----FWEEQAIGRAYRLGQVKPVYVYRFISGGTFEEVMYNKALFKTQLAHRVVD--KK 1490

Query: 201  ETIHV 205
              I +
Sbjct: 1491 NPIRL 1495


>gi|50311677|ref|XP_455865.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74689997|sp|Q6CJM4|RAD5_KLULA RecName: Full=DNA repair protein RAD5
 gi|49645001|emb|CAG98573.1| KLLA0F17479p [Kluyveromyces lactis]
          Length = 1114

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------------LDKDP 98
               ++ L+ I E +    IIV   F+S L  L+                      + +  
Sbjct: 942  KALLRHLKQIQETSPGEQIIVFSQFSSFLDILEIELRSHLPRDQVIIYKFDGRLDMKERT 1001

Query: 99   CTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++++++     I LL     + G GLNL    +       WW      Q I+RI    
Sbjct: 1002 RILEQFHDKDLSCIKLLLLSLKTGGVGLNLT-CASRAFMMDPWWSPGMEDQAIDRI---- 1056

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G ++ V V   I  N+++E +L+    K  + D ++   + E
Sbjct: 1057 -HRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGD-IVEGDEAE 1100


>gi|313231009|emb|CBY19007.1| unnamed protein product [Oikopleura dioica]
          Length = 1011

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 10  ELYCDLQGENIEAFNSASKTV-KCLQLANGAVYYDEEKHWKEVHDEKIKALEVII----- 63
           + + +LQ     + +S +  + +  + +N A    +     E   +  +     I     
Sbjct: 237 KNFKELQKGAHGSKSSFTNIMIELKKCSNHAWLVKDPDDIDEFDQKSTEEKIDRILKGSG 296

Query: 64  -----------EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
                       K N + +++       L  +       R   +             +++
Sbjct: 297 KMMLLDKLLRRLKENGSRVLIFSQMVMMLDVISDYMALRRYQFQRLDGSTRGDLRQRSME 356

Query: 103 EWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G G+NL    + ++ F   W+ +      +     R  + G
Sbjct: 357 HFNAPNSTDFAFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARAHRIG 410

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            K+ V +Y  ++  +++E V++R + K  +  L++ 
Sbjct: 411 QKKTVKIYRFVSAMSVEEDVIERAKKKMVLDHLVIQ 446


>gi|294631185|ref|ZP_06709745.1| SNF2 domain-containing protein [Streptomyces sp. e14]
 gi|292834518|gb|EFF92867.1| SNF2 domain-containing protein [Streptomyces sp. e14]
          Length = 730

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR--------------TLD 95
              K+  L  I+ +   N    +V  HF   L  + +A                      
Sbjct: 527 KSAKLDRLREIVREAAENGRKTVVFSHFKDVLGVVGEALAPAPGGSVPVFGPLTGAVPAA 586

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + ++   + P +L A   + G GLNLQ   +++V           Q       V 
Sbjct: 587 RRQRIVDDFGGVRGPAVLLAQIQAAGVGLNLQA-ASVVVLCEPQVKPTAEQ-----QAVA 640

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R  + G  R V V+ L+A   +DE +++ L  KS + D 
Sbjct: 641 RAHRMGQIRPVRVHRLLATGGVDERLVRLLERKSRLFDA 679


>gi|170085493|ref|XP_001873970.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164651522|gb|EDR15762.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1313

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 70   PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
              +V   + + L            R  +     +  D+         +    +L     +
Sbjct: 1148 KTVVFSQWTTMLDKIEDALEVAGIRYDRLDGTMKRDDRTKAMDALKTDPGCEVLLVSLKA 1207

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL      +     +W+     Q ++RI      + G  R V    LI +N+I+ 
Sbjct: 1208 GGVGLNLTA-AQRVYLMDPYWNPAVENQAVDRI-----HRLGQTRPVTTVKLIIENSIEA 1261

Query: 179  LVLQRLRTKSTIQDLLLN 196
             +L+  + K+ + ++ L 
Sbjct: 1262 RLLEVQKKKTALANMTLG 1279



 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 2   KQYHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           + Y +F  E   +                   K ++  Q+ +       +   +E H + 
Sbjct: 878 EIYDQFFNESKAEFNDLSTKNEVMKNYVGILQKILRLRQICDHFELVQGKSVTREDHGQD 937

Query: 56  IKALEVII 63
             A    +
Sbjct: 938 ATAACEDL 945


>gi|115647222|ref|XP_797049.2| PREDICTED: similar to MGC108253 protein, partial [Strongylocentrotus
            purpuratus]
          Length = 1279

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 32   CLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA 87
              +L +      E +  +++     K + L+ ++   K   + +++   F   L  +Q+ 
Sbjct: 1097 LHRLCHEYSGLREYRLDQDLVTQSGKFQLLDKMLADLKEQGSRVLLFSQFVMVLDIVQEY 1156

Query: 88   ----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                            + +    I ++N    + +      + G G+NL    N ++   
Sbjct: 1157 LKIRGHKFVRMDGQTPVAERAQLIDKFNKNDSVFIFMLSTRAGGVGINLTA-ANTVILHD 1215

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + ++        ++    R  + G  R V V  L+++ TI+E +L   + K  ++  + +
Sbjct: 1216 IDFNP-----YNDKQAEDRCHRVGQTREVSVIRLVSKQTIEEGMLSCAKYKLKLEKQMTS 1270

Query: 197  ALKKE 201
             +  E
Sbjct: 1271 GISGE 1275


>gi|226311883|ref|YP_002771777.1| hypothetical protein BBR47_22960 [Brevibacillus brevis NBRC 100599]
 gi|226094831|dbj|BAH43273.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 568

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 14/175 (8%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
                     Q+   +      +  ++++D+       II     A       +  D   
Sbjct: 349 QILELVEMIKQIETHSKAAKTVELIQQINDKV------IIFTEYRATQNYLQKYLHDHGI 402

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K       +   +  +L A   + G G+NLQ+  N ++ + + W+   
Sbjct: 403 TSVPFRGGFKRSKKDWMTDLFQN-RAQVLIAT-EAGGEGINLQF-CNQVINYDMPWNPMR 459

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +Q I R+      + G KR V +Y L    TI+E +L+ L  K  + ++++  L
Sbjct: 460 VEQRIGRV-----HRLGQKRDVHIYNLSTTGTIEEHILKLLYEKIDLFEMVIGEL 509


>gi|158288154|ref|XP_310015.4| AGAP009344-PA [Anopheles gambiae str. PEST]
 gi|157019247|gb|EAA05751.4| AGAP009344-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 45/186 (24%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK------------ 96
               K+  L  I++  N     +++   F S L  ++    +    ++            
Sbjct: 676 FPSNKLWILFEILKHCNERGEKVLIFTAFVSVLNMVEHFMAKIHHQEENPQLSDAYAYSA 735

Query: 97  ----------------------DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNI 131
                                     I  +N+ +            + G G+NL  G N 
Sbjct: 736 FKGPWEPGKDYYRLDGKTQKSIRHQMITSFNDPQNKRTKCFLISAKAGGQGINLT-GANR 794

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++     W+    QQ I RI      + G KR  +VY LIA  T++E V  R  TK  + 
Sbjct: 795 VIILDTSWNPSNDQQNIFRI-----FRLGQKRKCYVYRLIAAGTMEEKVYSRSVTKQALS 849

Query: 192 DLLLNA 197
             +++ 
Sbjct: 850 FRVVDE 855


>gi|66771903|gb|AAY55263.1| IP13006p [Drosophila melanogaster]
          Length = 726

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL+     F    T  +    ++++N   +  +L     + G GLNL    N ++   L
Sbjct: 589 QDLSWETLDFNGQLTAKEREIVLRDFNANNEKRVLLLSLTAGGVGLNL-NVANHMLIVDL 647

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  I  ++L
Sbjct: 648 HWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 700



 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           + Y +F +       GE I         ++  Q        
Sbjct: 397 EIYERFLK-SLGYNPGEKILGIYILVLLLRLRQFCCHPGLM 436


>gi|74692796|sp|Q753V5|RAD5_ASHGO RecName: Full=DNA repair protein RAD5
          Length = 1085

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            F SD+  + K   +    ++     +   +  +   +L     + G GLNL    +    
Sbjct: 952  FASDICEIYKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLT-CASHAFI 1010

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW        +E   + R  + G    V +Y  I +N+I+E +L+    K ++ + +
Sbjct: 1011 MDPWWSPG-----MEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGEFV 1065


>gi|302308737|ref|NP_985767.2| AFR220Wp [Ashbya gossypii ATCC 10895]
 gi|299790770|gb|AAS53591.2| AFR220Wp [Ashbya gossypii ATCC 10895]
          Length = 1085

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
            F SD+  + K   +    ++     +   +  +   +L     + G GLNL    +    
Sbjct: 952  FASDICEIYKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLT-CASHAFI 1010

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               WW        +E   + R  + G    V +Y  I +N+I+E +L+    K ++ + +
Sbjct: 1011 MDPWWSPG-----MEDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGEFV 1065


>gi|154310570|ref|XP_001554616.1| hypothetical protein BC1G_06759 [Botryotinia fuckeliana B05.10]
 gi|150851299|gb|EDN26492.1| hypothetical protein BC1G_06759 [Botryotinia fuckeliana B05.10]
          Length = 1142

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            +  L+ I +++ +   +V   F S L+ ++                         +  + 
Sbjct: 978  LSNLKSIRKESPSMKSVVFSQFTSFLSLIEPALARSSIPFLRLDGSMPQKARAAVLARYK 1037

Query: 106  E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + G+  +L     + G GLNL      +     WW        +E   + R  + G    
Sbjct: 1038 DSGEGIVLLLSLRAGGVGLNLT-MAKRVFMMDPWWSFA-----VEAQAIDRVHRMGQVGE 1091

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V V   I + +++E +L+    K  I     +++  +K+   +
Sbjct: 1092 VVVKRFIVKGSVEERMLRVQERKKFIASSLGMMSDEEKKLQRI 1134



 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 3/50 (6%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 2   KQYHKF----QRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDEE 45
           + Y       +R    +++   +     +  ++ ++  Q     +    +
Sbjct: 780 EVYDHIFTRAKRTFSANIEAGTVLKAYTSIFAQILRLRQSCCHPILTRNQ 829


>gi|50555271|ref|XP_505044.1| YALI0F05698p [Yarrowia lipolytica]
 gi|74632870|sp|Q6C2R8|RAD5_YARLI RecName: Full=DNA repair protein RAD5
 gi|49650914|emb|CAG77851.1| YALI0F05698p [Yarrowia lipolytica]
          Length = 1025

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 26/186 (13%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +++      +   +    +   K  QL          K  K V   +  +   II+    
Sbjct: 845  KDIRLKKLSDRPRSSKLVALVSKLKQL---------PKDAKSVVFSQFTSYLDIIQTELR 895

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               I A+ F+  L+R            +    ++ +   K  +L     + G GLNL   
Sbjct: 896  REKIQAFRFDGTLSRQ-----------QRTDVLKAFGLSKGSVLLISLKTGGVGLNLVT- 943

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N       WW   +  Q I+RI      + G  + V V   I +N+++E +L+  + K 
Sbjct: 944  ANHAFIMDPWWTFAQEAQAIDRI-----HRMGQTKDVHVTRFIVENSVEEKMLKIQQQKM 998

Query: 189  TIQDLL 194
             +   L
Sbjct: 999  VLAGTL 1004


>gi|288927483|ref|ZP_06421330.1| helicase, Snf2 family [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330317|gb|EFC68901.1| helicase, Snf2 family [Prevotella sp. oral taxon 317 str. F0108]
          Length = 859

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
              +         +   L +     D++  +     E I  +  +I ++    ++V   +
Sbjct: 418 SETDRNKLMKYLSQMRMLCDSTYILDQKTRFDTKVTEVINIVRNVI-ESGDEKLVVFSQW 476

Query: 78  NSDLARL----------QKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQ 126
                 +           +    G    +    +  + +     +      +   GLNLQ
Sbjct: 477 ERMTRLVAKELEKEGIGFEYLHGGIPSIRRKDLVNNFMDEPHCRVFL-STDAGSTGLNLQ 535

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +++V   L W+    +Q I R+      + G KR + V  L++  T +E +L +L+ 
Sbjct: 536 A-ASVVVNVDLPWNPAVLEQRIARV-----YRLGQKRNIQVINLVSAGTFEEDMLDKLKF 589

Query: 187 KSTIQDLLLNALK 199
           KS++ + +L+  +
Sbjct: 590 KSSLFEGVLDGGE 602


>gi|300708940|ref|XP_002996640.1| hypothetical protein NCER_100233 [Nosema ceranae BRL01]
 gi|239605957|gb|EEQ82969.1| hypothetical protein NCER_100233 [Nosema ceranae BRL01]
          Length = 1262

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 20/178 (11%)

Query: 35  LANGAVYYDEEKHWKEV-HDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGR 92
           +AN  V   +E +   +    K+  L+ ++ K      +++       L  L +     +
Sbjct: 649 IANNIVTDIDEYYKILIQSSGKLVLLDKLLNKLYGHHKVLIFSQMTKCLDLLGEYLAYKK 708

Query: 93  TLDKD----------PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +              I  +++      +      + G G+NL    + ++ F   W+
Sbjct: 709 YKFERIDGGVRGDHRQAAIDRFSDANSDGFVFLLCTRAGGVGINLTA-ADTVIIFDSDWN 767

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +      +     R  + G    V +Y L+ +NT +  +  +   K  +   +L  +
Sbjct: 768 PQN-----DLQAQARCHRIGQTNEVKIYRLVTRNTYEREMFDKAGMKLGLDRAVLQKM 820


>gi|225557592|gb|EEH05878.1| transcription termination factor 2 [Ajellomyces capsulatus G186AR]
          Length = 1092

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 26/216 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R  Y   Q   +       +  K  Q      Y       K +    +  +E   
Sbjct: 876  YTAITRRGYEKFQESQLSRREGPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 929

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW-NEGKI 109
                      IV   + S L  ++ A                TL +    I  +  +  +
Sbjct: 930  KAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTRLDGTMTLKQRNAAIDAFREDDNV 989

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+ +      ++     Q ++R+      + G  R V    
Sbjct: 990  TILLATLGAGGVGLNLTA-GSRVYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1043

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I +++I+E + +  R K  + D+ LN  K +   +
Sbjct: 1044 FIMKDSIEEKIAELARKKQQMADMSLNRGKLDRREL 1079


>gi|255594207|ref|XP_002536048.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223521096|gb|EEF26335.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 267

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE-GKIPLLFAHPAS 118
             IV   +   L  L+          +              ++++N   ++ ++     +
Sbjct: 132 KAIVFSQWTRMLDLLEACLKSSSVQYRRLDGTMSVVARDKAVKDFNTIPEVSVMIMSLKA 191

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLN+      ++   LWW+        E   + R  + G  R V V+ L  ++T+++
Sbjct: 192 ASLGLNMVAAC-RVLLLDLWWNPTT-----EDQAIDRAHRIGQTRPVTVFRLTVKDTVED 245

Query: 179 LVLQRL 184
            +L   
Sbjct: 246 RILALQ 251


>gi|315048349|ref|XP_003173549.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
 gi|311341516|gb|EFR00719.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
          Length = 922

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     +    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 739 NEIDVESDSSSSKIQALIKILTAKGQAAGTKTVVFSQWTSFLDLIEPQLALNNIKFARID 798

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D    +  ++ +  ++ A    C  GLNL    N ++    WW        I
Sbjct: 799 GKMNSSKRDAAMSKLTHDPECSVMLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 852

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           E   V R  + G +RA  ++ L+ +N+I++ VL   + K  +       
Sbjct: 853 EDQAVDRVYRLGQQRATTIWRLVMENSIEDRVLDIQKEKRELMTTAFQE 901



 Score = 34.3 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 3/30 (10%), Positives = 10/30 (33%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEE 45
           +G+     +     ++  Q+ N      + 
Sbjct: 613 KGKKTTYSHVLEVLLRLRQVCNHWKLCHDR 642


>gi|82596119|ref|XP_726130.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481408|gb|EAA17695.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 1312

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I+E+N  +    +      + G G+NL    N ++ 
Sbjct: 1160 YCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTA-ANHVIM 1218

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +   W+       I+   + R  + G KR V V+ L+ + T++E +  R   K  +  L+
Sbjct: 1219 YDEDWNP-----FIDLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQKLKLDKLV 1273

Query: 195  LNALKKETI 203
            +   + E +
Sbjct: 1274 VQTQEDEDM 1282


>gi|320580035|gb|EFW94258.1| DNA helicase [Pichia angusta DL-1]
          Length = 395

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 23/166 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPCT 100
           +  +  L+ I E+     +IV   F S L  ++K         +                
Sbjct: 223 NALLSHLQQIYEENPGDHVIVFSQFTSFLDLVEKELKSYTCNFRILKFDGRLNVDQRQRA 282

Query: 101 IQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           + E+N    +G+I +L     + G GLNL    +        W+     Q I+RI     
Sbjct: 283 LNEFNTKTTDGRITILLISLKAGGVGLNLT-IASKAFLLDPHWNNATEFQAIDRI----- 336

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
            + G  ++V V   I + +I+E +L+    K+ + + L +N  ++ 
Sbjct: 337 HRVGQSKSVKVVRFIMEGSIEERMLKIQERKNQLGEALSMNDEERR 382


>gi|148682121|gb|EDL14068.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
          Length = 2429

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
            ++   D   E +E         + L++A      +E      V  + + +L++I      
Sbjct: 1939 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 1992

Query: 63   ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                  +    P+I                             +E+N+       L    
Sbjct: 1993 ASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIIS 2052

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+        +   + R  + G  + V+VY  +AQ T
Sbjct: 2053 TKAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGT 2106

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2107 MEDKIYDRQVTKQSLSFRVVD 2127


>gi|46487453|gb|AAS99124.1| alpha thalassaemia mental retardation X-linked protein [Macropus
            eugenii]
          Length = 2464

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFS 136
                         T        +E+N+       L      +   G+NL    N ++ F 
Sbjct: 2049 FRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFD 2107

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2108 ASWNPS-----YDIQSIFRVYRFGQNKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2162


>gi|209876065|ref|XP_002139475.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209555081|gb|EEA05126.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 1923

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK----- 96
           DE     E ++ K + L+   ++     +++   F   L         +G    +     
Sbjct: 789 DEVIENTEENNYKSEKLDKPKKRCRMHKVLIFTQFQLILDELENYCLWRGWQYMRLDGST 848

Query: 97  ----DPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                   I+E+   +  + +      + G G+NL    N +V +   W+       ++ 
Sbjct: 849 NKLIRELDIREFGLPDNYVFIYLICTRAGGLGINLVS-ANHVVMYDEDWNP-----FVDL 902

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             V R  + G  R V ++ L+ + +++E ++     K  +  +++ A ++E
Sbjct: 903 QAVDRAHRIGQTRDVCIWKLVTEWSVEERMVFGREQKLKLDKMVIKAREEE 953


>gi|300796173|ref|NP_001179215.1| helicase-like transcription factor [Bos taurus]
 gi|297471227|ref|XP_002685073.1| PREDICTED: helicase-like transcription factor [Bos taurus]
 gi|296491102|gb|DAA33185.1| helicase-like transcription factor [Bos taurus]
          Length = 1009

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 19/177 (10%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---- 91
            N     + E       +  + AL  + +K      +V   F + L+ ++          
Sbjct: 819 CNTEKKSNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVF 878

Query: 92  ------RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                     K   +IQ +     G   ++     + G GLNL    + +      W+  
Sbjct: 879 TRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPA 937

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              Q  +R       + G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 938 AEDQCFDRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 989



 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|14548140|gb|AAK66797.1|U40238_20 SWI/SNF family helicase [uncultured crenarchaeote 4B7]
          Length = 570

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           I  +E  +        I +   +S       +   G+T       I  + +G+  L+ A 
Sbjct: 409 IMEIEESVVVFCHHKAIHSLLHHSLSDYDPASIIGGQTDVVRQREIDRFQKGQTKLMIAG 468

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W        I R    R  + G K  VF YYL+ + T
Sbjct: 469 LRAGNVGINLTT-AKYVIFAELDWSPA-----IHRQAEDRLHRIGQKNTVFAYYLVGKGT 522

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +DE V + L  KS   D +L+
Sbjct: 523 LDEHVAEILVDKSYEIDTILD 543


>gi|154091016|ref|NP_033556.2| transcriptional regulator ATRX [Mus musculus]
 gi|123121759|emb|CAM16251.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
 gi|123294232|emb|CAM19070.1| alpha thalassemia/mental retardation syndrome X-linked homolog
            (human) [Mus musculus]
          Length = 2476

 Score = 75.2 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
            ++   D   E +E         + L++A      +E      V  + + +L++I      
Sbjct: 1986 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 2039

Query: 63   ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                  +    P+I                             +E+N+       L    
Sbjct: 2040 ASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIIS 2099

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+        +   + R  + G  + V+VY  +AQ T
Sbjct: 2100 TKAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGT 2153

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2154 MEDKIYDRQVTKQSLSFRVVD 2174


>gi|83769647|dbj|BAE59782.1| unnamed protein product [Aspergillus oryzae]
          Length = 1100

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +  +   I +L A   + G GLNL    + +      ++     Q ++R+    
Sbjct: 984  RQKALQEFHDNNDITILLATIGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV---- 1038

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1039 -HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1087


>gi|5915738|sp|Q61687|ATRX_MOUSE RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=HP1
            alpha-interacting protein; AltName: Full=HP1-BP38
            protein; AltName: Full=Heterochromatin protein 2;
            AltName: Full=X-linked nuclear protein
 gi|3002558|gb|AAC08741.1| ATRX protein [Mus musculus]
          Length = 2476

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
            ++   D   E +E         + L++A      +E      V  + + +L++I      
Sbjct: 1986 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 2039

Query: 63   ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                  +    P+I                             +E+N+       L    
Sbjct: 2040 ASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIIS 2099

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+        +   + R  + G  + V+VY  +AQ T
Sbjct: 2100 TKAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGT 2153

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ +  R  TK ++   +++
Sbjct: 2154 MEDKIYDRQVTKQSLSFRVVD 2174


>gi|221052138|ref|XP_002257645.1| DNA repair protein rad54 [Plasmodium knowlesi strain H]
 gi|193807475|emb|CAQ37981.1| DNA repair protein rad54, putative [Plasmodium knowlesi strain H]
          Length = 1052

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW- 104
           +  L   I++     +++  ++   L  ++    +          G  + K    I ++ 
Sbjct: 549 LHFLLKTIKQNTTDKVVIVSNYTQTLDYMEILCRENSYKFVRLDGGINIKKRHKVINDFT 608

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           +   I +      S G G+NL    N LV     W+        ++  + R  + G K+ 
Sbjct: 609 HSNDIFIFLLSSKSGGCGINL-ISSNRLVLLDPDWNPAN-----DKQALARVWREGQKKI 662

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++Y      TIDE V QR  +K  +  +++
Sbjct: 663 CYIYRFFCTGTIDEKVYQRQISKDGLSSMIV 693


>gi|45357049|gb|AAS58478.1| SNF2P [Hordeum vulgare subsp. vulgare]
          Length = 882

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 41/231 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL       G +    +  +  V+  +  +    +        EE      
Sbjct: 303 KIYLSVLRKELQTLLSFTGGSSRHQSLQNIVVQLRKACSHPYLFSGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++++EK +     +++       L  LQ          +             
Sbjct: 363 ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLDGSVRAEERFA 422

Query: 98  ----------PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                        +++ N      +      + G GLNL  G + ++F+   W+ +    
Sbjct: 423 AIRNFSSQPTKGVVRDDNNPSGAFIFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA--- 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + R  + G    V    L++Q TI+E++++R   K  +   +   
Sbjct: 479 --DKQALQRTHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFGD 527


>gi|169790814|ref|NP_001013626.2| RAD26L hypothetical protein isoform 1 [Mus musculus]
          Length = 1537

 Score = 75.2 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 507 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 551

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 552 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 607

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 608 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 660


>gi|215254414|gb|ACJ64199.1| SNF2P [Triticum turgidum]
          Length = 882

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 41/231 (17%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    ++EL       G +    +  +  V+  +  +    +        EE      
Sbjct: 303 KIYLSVLRKELQTLLSFTGGSSRHQSLQNIVVQLQKACSHPYLFSGIEPEPYEEGEHLVQ 362

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPC 99
              K+  L++++EK +     +++       L              +        ++   
Sbjct: 363 ASGKLIVLDLVLEKLHRLGHRVVLFAQMTQTLDILQDFLELRNYTYERLDGSVRAEERFA 422

Query: 100 TIQEW-------------NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            I+ +             N     +      + G GLNL  G + ++F+   W+ +    
Sbjct: 423 AIRNFSSQPTKGGVRDDSNPSGAFVFMVSTRAGGVGLNL-IGADTVIFYEQDWNPQA--- 478

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++  + R  + G    V    L++Q TI+E++++R   K  +   +   
Sbjct: 479 --DKQALQRTHRIGQLNHVLSINLVSQRTIEEVIMRRAERKLKLSHNIFED 527


>gi|330960628|gb|EGH60888.1| Non-specific serine/threonine protein kinase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 610

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 36/199 (18%)

Query: 25  SASKTVKCLQLANGAVY---------------YDEEKHWKEVHDEKIKALEVIIEK--AN 67
           +   T++   +                              +   K+     II +   +
Sbjct: 394 ALVATLQLQLVCAHPWLIKKFSSDVDVDADDASINYGGTSPLMTPKMDRAISIIVEAFFS 453

Query: 68  AAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNE-GKIPLLFA 114
              +++   FN     ++KA                   +     + +++E G    L  
Sbjct: 454 GKKVLLFSVFNKVEFLIKKALSSYPKSFFWGAINGSTPPEDRQSIVDKFSEFGGAGCLIL 513

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +P + G GLN+     +++ F+  W+        E     R  + G  + V +Y+L  ++
Sbjct: 514 NPKAAGAGLNITA-ATVVIHFTPVWNPAL-----ESQASARAHRRGQCQPVTIYHLFYKD 567

Query: 175 TIDELVLQRLRTKSTIQDL 193
           T++E++++R   K  + + 
Sbjct: 568 TVEEVMVERSAWKRELANQ 586


>gi|229031878|ref|ZP_04187866.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1271]
 gi|228729496|gb|EEL80485.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1271]
          Length = 560

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|46123559|ref|XP_386333.1| hypothetical protein FG06157.1 [Gibberella zeae PH-1]
          Length = 1117

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 64   EKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
                    +V   + S L            +        +  +    +  +  +  + ++
Sbjct: 956  PDEPPYKSVVFSGWTSHLDLIELALNANGIMFTRLDGSMSRTQRTIAMDRFREDNTVHVI 1015

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL   GN +      ++     Q I+R+      + G KR V     I 
Sbjct: 1016 LVSIMAGGLGLNLTA-GNSVYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVRTVRYIM 1069

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +++ +E +L+    K  +  L ++   +
Sbjct: 1070 RDSFEEKMLELQEKKRKLASLSMDGQNR 1097


>gi|82704891|ref|XP_726740.1| helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482279|gb|EAA18305.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
           yoelii]
          Length = 1472

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 8/129 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +                       I+E+N  +    +      + G G+NL    N ++ 
Sbjct: 63  YCKYRCWKYMRLDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTA-ANHVIM 121

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+       I+   + R  + G KR V V+ L+ + T++E +  R   K  +  L+
Sbjct: 122 YDEDWNP-----FIDLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQKLKLDKLV 176

Query: 195 LNALKKETI 203
           +   + E +
Sbjct: 177 VQTQEDEDM 185


>gi|293342563|ref|XP_002725263.1| PREDICTED: similar to putative repair and recombination helicase
           RAD26L isoform 2 [Rattus norvegicus]
 gi|293354404|ref|XP_002728495.1| PREDICTED: RAD26L hypothetical protein isoform 1 [Rattus
           norvegicus]
 gi|149029138|gb|EDL84423.1| similar to putative repair and recombination helicase RAD26L
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 1542

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N    + + K        K+  +      A+                  + 
Sbjct: 516 KMKVLDQLLNHFRKHRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 560

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 561 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPAN--- 616

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V+ LI+  T++E++  R   K  +  +++ +   +
Sbjct: 617 --DLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 669


>gi|154311656|ref|XP_001555157.1| hypothetical protein BC1G_06287 [Botryotinia fuckeliana B05.10]
 gi|150850798|gb|EDN25991.1| hypothetical protein BC1G_06287 [Botryotinia fuckeliana B05.10]
          Length = 1081

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 17/143 (11%)

Query: 74   AYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F + L  ++                 T  +   +I  +  +  +        + G  
Sbjct: 933  FSQFTTMLQLVEWRLRRAGITTVMLDGSMTPAQRQASINHFMTDVNVECFLVSLKAGGVA 992

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    N +     WW+     Q  +R       + G  R   +  L  +++++  ++ 
Sbjct: 993  LNLTE-ANKVFIVDPWWNPAAEWQSADRC-----HRIGQARPCSITRLCIEDSVESRMVL 1046

Query: 183  RLRTKSTIQDLLLNALKKETIHV 205
                K+ +    +NA +    ++
Sbjct: 1047 LQEKKANMIHSTINADESAMENL 1069


>gi|125805885|ref|XP_693071.2| PREDICTED: helicase-like transcription factor-like [Danio rerio]
 gi|169158941|emb|CAQ15009.1| helicase-like transcription factor [Danio rerio]
          Length = 942

 Score = 74.8 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEWN 105
           +  L  +  +      +V   F   L          G +  +             I+++ 
Sbjct: 774 MSNLLKLRNEDPTVKSMVVSQFTGFLDVLEVALREYGFSFTRLDGSLIQRARAKAIEDFQ 833

Query: 106 E---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +   G   ++     + G GLNL    + +      W+     Q ++R       + G  
Sbjct: 834 DSTPGSPTIMLLSLKAGGVGLNLTA-ASQVFVMDPAWNPAAEDQCVDRC-----HRLGQS 887

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V +   I +++++E +++  + K  + D    
Sbjct: 888 RDVVITKFIVKDSVEENMVKIQKKKQELVDKAFG 921



 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 14/54 (25%)

Query: 7   FQRELYCDLQGENIEAFN--------------SASKTVKCLQLANGAVYYDEEK 46
            +RE Y  ++GE                      +  ++  Q            
Sbjct: 613 MEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCCCHPSLVGNYT 666


>gi|303285416|ref|XP_003061998.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456409|gb|EEH53710.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2365

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA--HPASCGHGLNLQYGGNILVFFSLWWD 140
            R            +    I  +N              + G GLNL    + +V +   ++
Sbjct: 1158 RAYGRICGRTMGAERQRVIDGFNAEGSHQFLMLVSTRAGGLGLNL-ATADTIVLYDPEFN 1216

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   IE+   +R  + G KR V VY L+   +++E ++Q+ + K  I+ L++
Sbjct: 1217 P-----FIEQQAQSRAHRMGQKREVAVYQLVTAGSVEERIVQKAKAKLAIERLVV 1266


>gi|156082193|ref|XP_001608585.1| DNA repair protein rhp54 [Plasmodium vivax SaI-1]
 gi|148801524|gb|EDL42923.1| DNA repair protein rhp54, putative [Plasmodium vivax]
          Length = 1064

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GR 92
               +      + +  L   I++     +++  ++   L  ++    +          G 
Sbjct: 519 HRCYYNMSCKFQLLHFLLKTIKQNTTDKVVIVSNYTQTLDYMEILCKENFYKFVRLDGGI 578

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++ K    I ++ +   I +      S G G+NL    N L+     W+        ++ 
Sbjct: 579 SIKKRHKVISDFTHSSDIFIFLLSSKSGGCGINL-ISSNRLILLDPDWNPAN-----DKQ 632

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R  + G K+  ++Y L    TIDE V QR  +K  +  +++
Sbjct: 633 ALARVWREGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSSMIV 676



 Score = 34.3 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 19/68 (27%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y  F ++       ++    N      K  ++ N  +  +        H    K +E  
Sbjct: 393 LYVLFLKDKRILKNEQSTNKVNVLINIKKLEKICNHPLLLNPNDMKDVGHVSLAKLIEDA 452

Query: 63  IEKANAAP 70
            ++     
Sbjct: 453 AKQHQGKR 460


>gi|268564201|ref|XP_002639041.1| C. briggsae CBR-XNP-1 protein [Caenorhabditis briggsae]
 gi|187022150|emb|CAP38921.1| CBR-XNP-1 protein [Caenorhabditis briggsae AF16]
          Length = 1333

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 30/201 (14%)

Query: 14   DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            +   ++    N     +  ++        +E      V  + ++    +I +        
Sbjct: 912  EEDKDDFSLSNKLVLLMAIIKKC------EEIGDKLLVFSQSLE-SLALIRRMLEYMAGT 964

Query: 74   AYHFNSDLA--------------RLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHP 116
               F+ D                             K      ++N+    +  L+    
Sbjct: 965  GQWFSDDHEALNAEGETWSWLEGEDYMTIDGSVQSVKRDAVQTQFNDPENLRARLMLIST 1024

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +   G N+    N +V F   W+        +   + R  + G  + V++Y  IAQ T+
Sbjct: 1025 RAGSLGTNMVA-ANRVVIFDACWNPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQGTM 1078

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E + +R  TK +    +++ 
Sbjct: 1079 EERIYKRQVTKESTSMRVVDE 1099


>gi|67523599|ref|XP_659859.1| hypothetical protein AN2255.2 [Aspergillus nidulans FGSC A4]
 gi|40744672|gb|EAA63828.1| hypothetical protein AN2255.2 [Aspergillus nidulans FGSC A4]
 gi|259487648|tpe|CBF86478.1| TPA: SNF2 family helicase/ATPase, putative (AFU_orthologue;
            AFUA_5G06600) [Aspergillus nidulans FGSC A4]
          Length = 1832

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             R                  +++N+G+  +      + G GLN+  G N ++ F   +  
Sbjct: 1388 NRQYSRLDGQTPAATRQAATKKFNQGEKQVYLISTRAGGLGLNIT-GANRVIIFDFSFSP 1446

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                 + E   + R  + G ++ VFVY  IA  T  E++ ++   K+ +   +++  K+ 
Sbjct: 1447 -----IWEEQAIGRAYRLGQQKPVFVYRFIAGGTFQEIIHEKATYKTQLAVRVVD--KRN 1499

Query: 202  TIH 204
             I 
Sbjct: 1500 PIR 1502


>gi|46126713|ref|XP_387910.1| hypothetical protein FG07734.1 [Gibberella zeae PH-1]
          Length = 918

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 17/170 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KA 87
                           +    ++ I         +V   +   L  ++            
Sbjct: 727 DPAPPQLRTAAVAPPSKIRSLVDDIKLSPPETKCVVFSTWRLTLDLVKGVLDQEGIQSIR 786

Query: 88  FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           F            ++ +  +  I ++         GL L             W+      
Sbjct: 787 FDGKVPQKDRQSVVKRFESDPNIRIMLLTLTCGAVGLTLTAAC-RAYLMEPHWNPTL--- 842

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             E   + R  + G  + V    L  +++ +E V+    +K  +  +LL+
Sbjct: 843 --EEQALARIHRLGQTKNVTTIRLYIRDSFEEQVMNVQESKKQLAGVLLS 890


>gi|149245558|ref|XP_001527256.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449650|gb|EDK43906.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 936

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 72/226 (31%), Gaps = 63/226 (27%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVII------------- 63
           + V+   + N    Y E       H             K +ALE I+             
Sbjct: 595 RMVQLRNICNSPYLYYEPFPMDGEHDEQFMNRLVTNSCKFQALEQILLPLITNIEKEPTL 654

Query: 64  ---------------------EKANAAPIIVAYHFNSDLARLQKAFPQGR---------- 92
                                  +     ++   F   +  +Q                 
Sbjct: 655 KTTTTTTRTAKTKSKKNKTGSVSSQNHKCLIFSQFTKVMDLIQDWLHFQNIKACRLDGLT 714

Query: 93  TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I ++N+      +      + G G+NL  G + ++ F   W+ +     ++ 
Sbjct: 715 PQEERAKQISQFNDSNSSYKVFLLSTRAGGLGINLT-GADTVILFDNDWNPQ-----MDL 768

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + G  + V +Y  + +++I+E+++ +  +K  ++ L++ 
Sbjct: 769 QAIDRVHRIGQTKPVKIYRFVVRDSIEEILIAKSSSKRFLEKLVIQ 814


>gi|119481535|ref|XP_001260796.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119408950|gb|EAW18899.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1194

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            ++         G   +L A   + G GLNL    + +      ++     Q I+R+    
Sbjct: 1078 RNRALEDFHTNGNTTILLATIGAGGVGLNLTS-ASKVYIMEPQYNPAAVAQAIDRV---- 1132

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              + G  R V     I + +I+E + +  + K  + D+ +N  K
Sbjct: 1133 -HRLGQTREVTTVQFIMKGSIEEKIFELAKKKQQLADMSMNRGK 1175


>gi|281361297|ref|NP_649751.2| CG10445, isoform C [Drosophila melanogaster]
 gi|272476855|gb|AAF54166.2| CG10445, isoform C [Drosophila melanogaster]
          Length = 945

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL+     F    T  +    ++++N   +  +L     + G GLNL    N ++   L
Sbjct: 808 QDLSWETLDFNGQLTAKEREIVLRDFNANNEKRVLLLSLTAGGVGLNL-NVANHMLIVDL 866

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  I  ++L
Sbjct: 867 HWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVL 919



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           + Y +F +       GE I         ++  Q        
Sbjct: 616 EIYERFLK-SLGYNPGEKILGIYILVLLLRLRQFCCHPGLM 655


>gi|195498631|ref|XP_002096606.1| GE25760 [Drosophila yakuba]
 gi|194182707|gb|EDW96318.1| GE25760 [Drosophila yakuba]
          Length = 861

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL+     F    +       ++++N      +L     + G GLNL    N ++   L
Sbjct: 724 QDLSWETLDFNGQLSAKDRELVLRDFNAEPDKRVLLLSLTAGGVGLNL-NVANHMLIVDL 782

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  I  +++
Sbjct: 783 HWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDFKLEIAKVVV 835



 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA 39
           + Y +F +       GE I         ++  Q     
Sbjct: 530 EIYERFLK-SLGYNPGEKILGIYILVLLLRLRQFCCHP 566


>gi|126342606|ref|XP_001372327.1| PREDICTED: similar to alpha thalassaemia mental retardation X-linked
            protein [Monodelphis domestica]
          Length = 2447

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFS 136
                         T        +E+N+       L      +   G+NL    N ++ F 
Sbjct: 2051 FRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFD 2109

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2110 ASWNPS-----YDIQSIFRVYRFGQNKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2164


>gi|326934975|ref|XP_003213557.1| PREDICTED: probable global transcription activator SNF2L2-like,
           partial [Meleagris gallopavo]
          Length = 232

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K + L+ I+ K  A    +++     S +  ++  F                +     
Sbjct: 23  SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAAL 82

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++++NE      +      + G GLNLQ   + ++ F   W+  +     +     R  +
Sbjct: 83  LKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQ-----DLQAQDRAHR 136

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 137 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 175


>gi|154275030|ref|XP_001538366.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414806|gb|EDN10168.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1051

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 26/216 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R  Y   Q   +       +  K  Q      Y       K +    +  +E   
Sbjct: 835  YTAITRRGYEKFQESQLSKRQGPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 888

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW-NEGKI 109
                      IV   + S L  ++ A                TL +    I  +  +  +
Sbjct: 889  KAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTRLDGTMTLKQRNAAIDAFREDDNV 948

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+ +      ++     Q ++R+      + G  R V    
Sbjct: 949  TILLATLGAGGVGLNLTA-GSRVYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1002

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I +++I+E + +    K  + D+ LN  K +   +
Sbjct: 1003 FIMKDSIEEKIAELAMKKQQMADMSLNRGKLDRREL 1038


>gi|28278128|gb|AAH45534.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 [Homo
            sapiens]
 gi|167773841|gb|ABZ92355.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1
            [synthetic construct]
 gi|190690133|gb|ACE86841.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 protein
            [synthetic construct]
 gi|190691507|gb|ACE87528.1| SWI/SNF-related, matrix-associated actin-dependent regulator of
            chromatin, subfamily a, containing DEAD/H box 1 protein
            [synthetic construct]
          Length = 1028

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
             +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 841  HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900

Query: 96   ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 901  RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 955

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++    R  + G  +   V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 956  -YNDKQAEDRCHRVGQTKEALVIKLISQGTIEESMLKINQQKLKLEQDM 1003


>gi|67600198|ref|XP_666342.1| SNF2 family N-terminal domain [Cryptosporidium hominis TU502]
 gi|54657319|gb|EAL36112.1| SNF2 family N-terminal domain [Cryptosporidium hominis]
          Length = 2142

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 65   KANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEW--NEGKIPLL 112
            K     I++   F   L         +G    +             I+E+   +  + + 
Sbjct: 924  KCKMHKILIFTQFQLILDELENYCLWRGWQYMRLDGSTNKLIRELDIREFGLPDNYVLVY 983

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    N +V +   W+       ++   V R  + G  R V ++ L+ 
Sbjct: 984  LICTRAGGLGINLVS-ANHVVMYDEDWNP-----FVDLQAVDRAHRIGQTRDVCIWKLVT 1037

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + +++E ++     K  +  +++    ++  H
Sbjct: 1038 EWSVEERMVFGREQKLKLDKMIIKGSARDDNH 1069


>gi|74137169|dbj|BAE21982.1| unnamed protein product [Mus musculus]
          Length = 995

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
           ++   D   E +E         + L++A      +E      V  + + +L++I      
Sbjct: 778 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 831

Query: 63  ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                 +    P+I                             +E+N+       L    
Sbjct: 832 ASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIIS 891

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL    N ++ F   W+        +   + R  + G  + V+VY  +AQ T
Sbjct: 892 TKAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGT 945

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +++ +  R  TK ++   +++
Sbjct: 946 MEDKIYDRQVTKQSLSFRVVD 966


>gi|284991028|ref|YP_003409582.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
           43160]
 gi|284064273|gb|ADB75211.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 714

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F     R            +        N+  + +      + G GLNLQ   NI++   
Sbjct: 567 FARQGVRFSSIRGNQSPASRQRNIDAFVNDPDVAVAVCSLTAAGVGLNLQVASNIVLAEL 626

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W D E+         + R  + G    V  + +IA  TID  + + + +K+ +    L+
Sbjct: 627 SWTDAEQT------QAIDRSHRIGQTEPVTAWRIIAAQTIDARIAELIDSKAGLAARALD 680

Query: 197 ALKKET 202
              +E 
Sbjct: 681 GSDEEV 686


>gi|299751065|ref|XP_001830032.2| helicase SWR1 [Coprinopsis cinerea okayama7#130]
 gi|298409203|gb|EAU91697.2| helicase SWR1 [Coprinopsis cinerea okayama7#130]
          Length = 1624

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 35/185 (18%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ 90
            LQ+A        E    +    K++ L  ++++       +++       L  L+     
Sbjct: 1332 LQIA------FPEPSLLQYDCGKLQRLAELLQEKKAGGHRVLIFTQMTRVLDILEVFLNH 1385

Query: 91   G----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL--------QYGGNI 131
                         ++      + +N + +I    +   S G G+            G + 
Sbjct: 1386 HGYLYLRLDGATKIEDRQYITERFNADSRIFCFISSSRSGGIGIKTPQTDAKYSLTGADT 1445

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            ++F+   ++ +     ++R     + + G  R V +Y  ++Q T++E +L++   K ++ 
Sbjct: 1446 VIFYDSDFNPQ-----MDRQ---CEDRIGQIRDVHIYRFVSQYTVEEAMLRKANQKRSLD 1497

Query: 192  DLLLN 196
            DL++ 
Sbjct: 1498 DLVIQ 1502


>gi|229174905|ref|ZP_04302425.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus MM3]
 gi|228608573|gb|EEK65875.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus MM3]
          Length = 560

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   II             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEIDDKVIIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|195353657|ref|XP_002043320.1| GM26909 [Drosophila sechellia]
 gi|194127434|gb|EDW49477.1| GM26909 [Drosophila sechellia]
          Length = 264

 Score = 74.8 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS I
Sbjct: 14  CVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 68

Query: 191 QDLLLNA 197
           Q ++++ 
Sbjct: 69  QRMVISG 75


>gi|260811612|ref|XP_002600516.1| hypothetical protein BRAFLDRAFT_205490 [Branchiostoma floridae]
 gi|229285803|gb|EEN56528.1| hypothetical protein BRAFLDRAFT_205490 [Branchiostoma floridae]
          Length = 606

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 23/181 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK------ANAAPIIVAYHFNSDLARLQKAFPQG 91
             V    E  ++ + D K      ++++           ++V   +   L  +++     
Sbjct: 377 HFVKLAREAAFRTLSDPKYCGKMQVLQQLLDVFNKQRRKVLVFSFYTKLLDIIEQYLMST 436

Query: 92  ----------RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                              ++++N    I L      + G GLN   G ++++ F   W+
Sbjct: 437 GEVYSRLDGTTRTSDRLRIVKDFNTNPNILLCLVSTTAGGLGLNFT-GASVVILFEPTWN 495

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               Q         R  + G ++ V VY L+   TI+E +  R   K  + ++ ++    
Sbjct: 496 PANDQ-----QAQDRAYRIGQRQDVRVYRLVTMGTIEENMYLRQVYKQQLSEIAVSDKTA 550

Query: 201 E 201
            
Sbjct: 551 R 551


>gi|86171519|ref|XP_966228.1| Smarca-related protein [Plasmodium falciparum 3D7]
 gi|46361194|emb|CAG25058.1| Smarca-related protein [Plasmodium falciparum 3D7]
          Length = 2719

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 20/178 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALE--VIIEKANAAPIIVAYHFN----------SDLARLQKA 87
            +  DE+K    + +E     E    + +A    +++   F                    
Sbjct: 1063 LQTDEKKVVINIKNEMNDNDENGEKLGEAKMHKVLIFTQFQLVLDELEEYCKYRCWKYMR 1122

Query: 88   FPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I+E+N  +    +      + G G+NL    N ++ +   W+     
Sbjct: 1123 LDGSTNKLIRELDIREFNLSDSIYFIYLISTRAGGLGINLTA-ANHVIMYDEDWNP---- 1177

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              I+   + R  + G KR V V+ L+ + T++E +  R   K  +  L++     E +
Sbjct: 1178 -FIDLQAIDRAHRIGQKREVNVWKLMTEWTVEERMAFRREQKLKLDKLVVQTQDDEDM 1234


>gi|82705590|ref|XP_727033.1| DNA repair protein RAD54 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482686|gb|EAA18598.1| DNA repair protein RAD54-like-related [Plasmodium yoelii yoelii]
          Length = 1163

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW- 104
           +  L   I++     +++  ++   L  ++    +          G ++ K    I ++ 
Sbjct: 665 LHFLLKTIKQETNDKVVIVSNYTQTLDYMEILCRENYYKFVRLDGGISIKKRHKVISDFT 724

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N   I +      S G G+NL    N L+     W+        ++  + R  + G K+ 
Sbjct: 725 NTDDIFIFLLSSKSGGCGINL-ISSNRLILLDPDWNPAN-----DKQALARVWREGQKKI 778

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++Y L    TIDE V QR  +K  +  +++
Sbjct: 779 CYIYRLFCTGTIDEKVYQRQISKDGLSSMIV 809


>gi|323309655|gb|EGA62863.1| Swr1p [Saccharomyces cerevisiae FostersO]
          Length = 1390

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 23   FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
             N    +    QL         +K   +    K++ L +++++   N    ++       
Sbjct: 1215 QNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKV 1274

Query: 81   LA-RLQKAFPQGRTLDK---------DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG 129
            L    Q     G    +              + +N + +I +      S G G+NL  G 
Sbjct: 1275 LDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLT-GA 1333

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + ++F+   W+       +++    R  + G  R V +Y  ++++TI+  +L++ + K T
Sbjct: 1334 DTVIFYDSDWNPA-----MDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKSQPKKT 1388

Query: 190  I 190
            I
Sbjct: 1389 I 1389


>gi|68073367|ref|XP_678598.1| DNA repair protein rhp16 [Plasmodium berghei strain ANKA]
 gi|56499117|emb|CAH97553.1| DNA repair protein rhp16, putative [Plasmodium berghei]
          Length = 1545

 Score = 74.8 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                ++   + S L  ++                   + ++       N+ ++ +L    
Sbjct: 1392 DDKCLIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMVSRNNILYNFNNDNQLRVLLISL 1451

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNLQ   N +     WW+            + R  + G  + V+    I +NT+
Sbjct: 1452 KAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYAIRFIIENTV 1505

Query: 177  DELVLQRLRTKSTIQDLLLN 196
            +E ++Q    K  + D  + 
Sbjct: 1506 EEKIIQLQNKKQLVFDCTIG 1525


>gi|313228772|emb|CBY17923.1| unnamed protein product [Oikopleura dioica]
          Length = 985

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDP 98
           ++  K K L+ ++ K       +++   F   +  +++                 ++   
Sbjct: 748 LNSGKFKVLDTLLPKLFEEGHRVLLFSQFVIMMDIMERYMTARKIKYMRLDGSTPVEDRL 807

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I  +N + +I L      + G G+NL    + ++   +  +        ++    R  
Sbjct: 808 DMIDTFNADSEISLFMVSTRAGGLGINLTS-ADTVIIHDIDPNP-----YNDKQAEDRCH 861

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G  + V +  LI ++TI+  + +    K  ++  +
Sbjct: 862 RVGQTKQVNIIRLIVKDTIEVRMRKLAVEKLNLESKM 898


>gi|168008489|ref|XP_001756939.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162691810|gb|EDQ78170.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2486

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 59/225 (26%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            K ++  ++ N        ++  +         K+  L+ I+ K +     +++       
Sbjct: 1453 KCMELRKVCNHPYLNYPPRYHIQGDMTVRTCGKLWILDRILVKLHKTGHRVLLFSTMTRL 1512

Query: 81   LARLQKAFPQGRTLDKD----------PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYG 128
            L  L+      R + +              I E+N  +    +      + G GLNLQ  
Sbjct: 1513 LDILEDYLQWRRLIYRRIDGMTTLEARESAIVEFNRPDSDCFIFLLSIRAAGRGLNLQT- 1571

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQ------------- 173
             + ++ +    + +      E   V R  + G KR V V Y+  + +             
Sbjct: 1572 ADTVIVYDPDPNPKN-----EEQAVARAHRIGQKREVRVIYMEAVVESTPSYEKEDELRS 1626

Query: 174  -NTIDELVLQR------------------LRTKSTIQDLLLNALK 199
              ++DE   +                    + K  + D ++NA +
Sbjct: 1627 GGSLDEKDDEMAGKDRYVGSVESLVRNNIQQHKIDMADEVINAGR 1671


>gi|114625715|ref|XP_528720.2| PREDICTED: RAD26L hypothetical protein [Pan troglodytes]
          Length = 776

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 584 KMKVLQQLLNHCRINRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 628

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 629 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN--- 684

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 685 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 737


>gi|196003012|ref|XP_002111373.1| hypothetical protein TRIADDRAFT_55310 [Trichoplax adhaerens]
 gi|190585272|gb|EDV25340.1| hypothetical protein TRIADDRAFT_55310 [Trichoplax adhaerens]
          Length = 849

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 13/140 (9%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGR----TLDKDPCTIQEWNEGK---IPLLFAHPA 117
           +   + I  ++ F S           G        +    I  +N      + L      
Sbjct: 661 EDEGSSIDYSWAFPSMAHYAPGVLEHGIDGSVPSHERSRLIDLFNSPDNNSVWLFLISTR 720

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G+NL    N +V +   W+        +     R  + G K+  ++Y L+  NT++
Sbjct: 721 AGNLGINLVA-ANRVVIYDSAWNP-----CYDNQAAFRIYRYGQKKPCYIYRLVGSNTME 774

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
            ++ +    K  +   +++ 
Sbjct: 775 HVIYKCQIRKQGLSRRIIDE 794


>gi|73990698|ref|XP_534300.2| PREDICTED: similar to SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin a3 [Canis
            familiaris]
          Length = 1106

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
            +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 933  NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQ 992

Query: 103  EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 993  CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 1046

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 1047 GQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 1086



 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 16/76 (21%), Gaps = 14/76 (18%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDE- 54
           K Y   + E    +        + A   +     ++  Q+                    
Sbjct: 773 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNAGSSSGPSGND 832

Query: 55  -------KIKALEVII 63
                  K+     +I
Sbjct: 833 TPEELRKKLIRKMKLI 848


>gi|324522288|gb|ADY48028.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 [Ascaris
           suum]
          Length = 147

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFF 135
           +                + +    I  +N    + +      + G G+NL    N ++  
Sbjct: 8   YLRLRGHEYCRLDGSTPVMERQERINAFNASNDLFVFLLSTKAGGMGINLTA-ANHIILH 66

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + ++        ++    R  + G K+ VFV  LI+  +++E +L   R K  ++  + 
Sbjct: 67  DIDFNP-----YNDKQAEDRCHRMGQKKEVFVVRLISAGSVEEGMLSVARKKLELEKEVT 121

Query: 196 NALKKE 201
            A   E
Sbjct: 122 GANCAE 127


>gi|325186402|emb|CCA20908.1| transcriptional regulator ATRX putative [Albugo laibachii Nc14]
          Length = 1323

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAP 70
           + D +   ++         + L+         E      V  + I  L VI +  A    
Sbjct: 688 FKDYEHGELDFSGKMVVLFEMLEAC------QEIGDRVIVFSQSIATLNVIEMFIAQRNN 741

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDP-CTIQEWNEG--KIPLLFAHPASCGHGLNLQY 127
            +       D A        G T  +D    I+++N+    + ++F    + G G+NL  
Sbjct: 742 RLRRSRKKHDKAPFTSLRIDGSTSQQDRFRQIEQFNDPEEDVDVIFISTKAGGEGINL-C 800

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           GGN +V F + W+        +   + R  + G  + VFVY  +A  T+++ V      K
Sbjct: 801 GGNRIVIFDVCWNP-----CNDAQSMCRSYRFGQTKPVFVYRFVAGATMEKKVYDLQIRK 855

Query: 188 STIQDLLLNA 197
             +   +++ 
Sbjct: 856 EGVAKQIVDD 865


>gi|256086324|ref|XP_002579350.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
 gi|238664781|emb|CAZ35589.1| excision repair helicase ercc-6-related [Schistosoma mansoni]
          Length = 1299

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 6/155 (3%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
                  +  K +   +   L++     N        H+ +    L+      +  D+  
Sbjct: 631 PRTLIFSQSIKFLDMAEKVILDIKCPVNNHTFGDDNIHYPTQHRILRLDGRTAKVCDRLS 690

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N+    ++       G GL +    N ++     W+       ++   V R  +
Sbjct: 691 IINKFQNDKSYTVMLLTTQVGGVGLTITS-ANRVIILDPSWNPA-----VDSQAVDRAYR 744

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G K  V VY LI   T++E + +R   K ++   
Sbjct: 745 IGQKLDVVVYRLITCATVEEKIYRRQIFKDSVIRQ 779


>gi|62327174|ref|YP_223931.1| helicase [Phage phiJL001]
 gi|50059492|gb|AAT69464.1| helicase [Phage phiJL001]
          Length = 513

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 27/216 (12%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASK----TVKCLQLANGAVYYDEE-------KHW 48
           K Y + + EL   +   G +IE   +A       ++  Q+  G + + E+       +  
Sbjct: 303 KMYEQIREELMAMVRADGSDIETLLTAELPIVNVLRLYQITAGYLPFQEDVNGEPVERVH 362

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTI 101
               + +++     + +      +V   F  D+             F    + D+     
Sbjct: 363 TFKENPRLETALAELRRQTD-KTVVWCRFTRDIDLLTAALGKFAVRFDGSISEDERAQNK 421

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           QEW +G    L     +   G  L      +++++    L        R    R  +   
Sbjct: 422 QEWLKGDAQYLVPQIQAMARGHTL-NIAPYVLYYTNDARLRLR-----RQSEDRTHRGKM 475

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +V    ++A +T+DE  ++ LR K  + + ++  
Sbjct: 476 NFSVLYGDMLASDTVDEKRVKSLRKKLAVAETIMGD 511


>gi|42783352|ref|NP_980599.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|206978444|ref|ZP_03239310.1| putative helicase [Bacillus cereus H3081.97]
 gi|222097673|ref|YP_002531730.1| helicase, putative [Bacillus cereus Q1]
 gi|42739280|gb|AAS43207.1| helicase, putative [Bacillus cereus ATCC 10987]
 gi|206743342|gb|EDZ54783.1| putative helicase [Bacillus cereus H3081.97]
 gi|221241731|gb|ACM14441.1| helicase, putative [Bacillus cereus Q1]
          Length = 560

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K  +   + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMDKINRIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|324328140|gb|ADY23400.1| helicase, putative [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 560

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K  +   + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMDKINRIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|298530049|ref|ZP_07017451.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509423|gb|EFI33327.1| SNF2-related protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 638

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 78/210 (37%), Gaps = 21/210 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQL--ANGAVYYDEEKHWKEVHDEKIKAL 59
           K +  +++ L   L  + +   +        LQ+     + Y  +         ++++ +
Sbjct: 269 KMHDGYKQYLLPLLNKKFLTPMDVRRIQELLLQMRRVCDSTYLVDRNTRISPKLKELEGI 328

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEW-NEGK 108
              I   +   +++   + +    + K   +             + K    I E+ N  +
Sbjct: 329 LDEIVVQSGRKMVIFSEWTTMTYLIAKQLSRMGINFVELSGKIPVHKRQALIDEFTNNPE 388

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFV 167
             +      S G GLNLQ   + ++ F L W+     Q I R+      + G     + V
Sbjct: 389 CKVFL-STDSGGTGLNLQA-ADCVLNFELPWNPARLNQRIGRV-----NRIGQTSTSINV 441

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             L+++N+I+E +L  +  K+ +   + + 
Sbjct: 442 INLVSKNSIEEKILAGIHLKTELFSGVFDG 471


>gi|123455548|ref|XP_001315517.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121898196|gb|EAY03294.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1579

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 36/218 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------DEKIKALEV 61
            +    ++  + ++   K   +       +  + +                  K   +  
Sbjct: 557 QIDESTVDTSHESASMQK---VCCHPFLIEGAEEYYTKRLNLPRIDLIRNLSTKFIWVSK 613

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEW-NEGK 108
           ++E+       +++       L  L++                +  +    I  +     
Sbjct: 614 VLEELKRENHKVLIFSQKVQLLHILREFCMLSGYNNELLIGEMSDIEKADAIDRYSKNPD 673

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      +   GLNL    +  + F   W+ +      +     R  + G  + V V 
Sbjct: 674 SFVFLISTRAGSEGLNLT-VADTAIIFDPDWNPQN-----DLQAQARVHRIGQTQKVDVL 727

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKETIH 204
            LI  NT +  +  R + K  +   LL  NA K + I 
Sbjct: 728 RLITYNTYEHEMFIRAQKKLGLWMDLLGENATKNDGIQ 765


>gi|300176297|emb|CBK23608.2| unnamed protein product [Blastocystis hominis]
          Length = 943

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +   + +I+++      I   H+N  L              +    +  + +    +L 
Sbjct: 510 ARYLKMLLILDECFQRRGIRTIHYNGMLGLE-----------QRAAALAAFKQSGSGVLL 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+ +    + +V     W+       ++   + R  + G  + V VY  +  
Sbjct: 559 ITVGAGGEGITVTE-ADRIVLLDPNWNPT-----VDEQAIDRAYRIGQTKNVIVYRCVTC 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
            TI+E +  R   K  +   ++ 
Sbjct: 613 GTIEEKMYARQVWKQCLNKKVIE 635


>gi|119174712|ref|XP_001239697.1| hypothetical protein CIMG_09318 [Coccidioides immitis RS]
          Length = 1183

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +L     + G GLNL    N +     WW        +E   + R  + G  + 
Sbjct: 1075 EQPSPNVLLISLRAGGVGLNLTA-ANHVYMMDPWWSFA-----VEAQAIDRVHRMGQLKD 1128

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V   + +N+I+E +L+    K  I   L
Sbjct: 1129 VKVTRFVVKNSIEERMLRVQERKMMIAGSL 1158


>gi|126333962|ref|XP_001368542.1| PREDICTED: similar to RAD26L hypothetical protein, [Monodelphis
           domestica]
          Length = 1569

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 30/196 (15%)

Query: 30  VKCLQLAN-------GAVYYDEEKHWKEVHDEKIKALEVII------EKANAAPIIVAYH 76
               ++ N         +   ++  ++ + D K      ++       K N   +++   
Sbjct: 487 THLKRICNQVFSKFKDFMQKSKDAAFETISDPKYSGKMKVLQQLLNHCKKNRDKVLLFSF 546

Query: 77  FNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEGK-IPLLFAHPASCGHGLNL 125
               L  L++         +              ++E+N  + I +      + G GLN 
Sbjct: 547 STKLLDVLEQYCMATGLDYRRLDGSTKSEERVKIVKEFNSTQDINICLVSTMAGGLGLNF 606

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             G N++V F   W+        +   + R  + G  R V V+ LI+  T++E++  R  
Sbjct: 607 -VGANVVVIFDPTWNPAN-----DLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQV 660

Query: 186 TKSTIQDLLLNALKKE 201
            K  +  +++ +   +
Sbjct: 661 YKQQLHCVVVGSENAK 676


>gi|312137978|ref|YP_004005314.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887317|emb|CBH46628.1| putative ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 585

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 21/206 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y     E   D  G  IE      +      Q+ N       E         K+    
Sbjct: 358 EIYDVLLAEAVDDGFGAGIERHGRVLAVLTALKQVCNHPGLITGEMDSLAGRSGKLDLCT 417

Query: 61  VII--EKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWN-E 106
            I+       +P ++   +      L +               G    +    +  +  E
Sbjct: 418 DIVATNMETGSPTLIFTQYRRTGEMLVRHLAEQFDVVAPFLHGGLGQSERAEIVSRFQSE 477

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P L     + G GL L    + +V F  WW+       +E     R  + G  R V 
Sbjct: 478 DGPPALVLSLRAAGTGLTLTRAAD-VVHFDRWWNPA-----VEAQASDRAHRIGQTRTVT 531

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQD 192
           V  L +  T++E +      K+ + D
Sbjct: 532 VTTLTSTTTVEEHIAGMHGHKAALTD 557


>gi|66361648|ref|XP_627347.1| ISWI related chromatinic protein with an apicomplexan specific domain
            architecture composed of 3x PHD+SNF2 ATpase+2xPHD
            [Cryptosporidium parvum Iowa II]
 gi|46228727|gb|EAK89597.1| ISWI related chromatinic protein with an apicomplexan specific domain
            architecture composed of 3x PHD+SNF2 ATpase+2xPHD
            [Cryptosporidium parvum Iowa II]
          Length = 2140

 Score = 74.4 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 65   KANAAPIIVAYHFNSDLA-RLQKAFPQGRTLDK---------DPCTIQEW--NEGKIPLL 112
            K     I++   F   L         +G    +             I+E+   +  + + 
Sbjct: 924  KCKMHKILIFTQFQLILDELENYCLWRGWQYMRLDGSTNKLIRELDIREFGLPDNYVLVY 983

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G G+NL    N +V +   W+       ++   V R  + G  R V ++ L+ 
Sbjct: 984  LICTRAGGLGINLVS-ANHVVMYDEDWNP-----FVDLQAVDRAHRIGQTRDVCIWKLVT 1037

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + +++E ++     K  +  +++    ++  H
Sbjct: 1038 EWSVEERMVFGREQKLKLDKMIIKGSARDDNH 1069


>gi|323356072|gb|EGA87877.1| Rad16p [Saccharomyces cerevisiae VL3]
          Length = 593

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 17/131 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IV   F S L  ++    +                +D       N  +  +      +
Sbjct: 460 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 519

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q  +R+      + G  R V +     +++I+ 
Sbjct: 520 GGVALNL-CEASQVFILDPWWNPSVEWQSGDRV-----HRIGQYRPVKITRFCIEDSIEA 573

Query: 179 LVLQRLRTKST 189
            +++    K  
Sbjct: 574 RIIELQEKKXK 584


>gi|229198355|ref|ZP_04325061.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1293]
 gi|228585055|gb|EEK43167.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1293]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K  +   + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMDKINRIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|109504572|ref|XP_341481.3| PREDICTED: RAD26L hypothetical protein isoform 2 [Rattus
           norvegicus]
 gi|109505337|ref|XP_001058999.1| PREDICTED: similar to putative repair and recombination helicase
           RAD26L isoform 1 [Rattus norvegicus]
          Length = 1533

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N    + + K        K+  +      A+                  + 
Sbjct: 507 KMKVLDQLLNHFRKHRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 551

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 552 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPAN--- 607

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V+ LI+  T++E++  R   K  +  +++ +   +
Sbjct: 608 --DLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 660


>gi|326476932|gb|EGE00942.1| chromodomain helicase DNA binding protein [Trichophyton tonsurans
           CBS 112818]
          Length = 423

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVF 134
           F   L           T  K    I  +N              + G G+NL    + ++ 
Sbjct: 11  FLDGLGLAHLRLDGSMTSLKKQKNIDAYNAPGSEYFAFLLSTRAGGVGINL-ATADTVII 69

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++  +     +   ++R  + G K+ V V+ L+ + + +E ++Q  + K  +  +L
Sbjct: 70  LDPDFNPHQ-----DIQALSRAHRIGQKKKVMVFQLMTRGSAEEKIMQIGKKKMALDHVL 124

Query: 195 LNAL 198
           +  +
Sbjct: 125 IERM 128


>gi|313844117|ref|YP_004061780.1| hypothetical protein OlV1_147c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599502|gb|ADQ91524.1| hypothetical protein OlV1_147c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 480

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYYDE--------EK 46
           + Y    ++    ++     A +            ++  Q+      Y E        + 
Sbjct: 236 QLYEFVFKDAQDTIKDAFKHAISLNAKNMVILECLLRARQVMIWPAMYLEGIAKQNGTQP 295

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------RTLDKDP 98
                   K++ L  +I+       +V   F  ++  +Q+                ++D 
Sbjct: 296 EQWVGRSNKMETLFRMIKAHPDEKTLVFCQFRGEMDYIQQNMECPTFRIDGSVPKDERDN 355

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I         +      S G GLNLQ     +      W+            V R  +
Sbjct: 356 QVIAFKKAPPGAVFIIQIKSGGQGLNLQE-ATRVYITGPSWNPATEL-----QAVGRSHR 409

Query: 159 AGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V+V  LI + T     ++E ++     KS +   +LN  + E
Sbjct: 410 TGQTKQVYVKKLIYKETDTFVSVEEEMMALQGHKSIVCSKVLNDERIE 457


>gi|298714899|emb|CBJ27655.1| similar to chromodomain helicase DNA binding protein 4 isoform 5
            [Ectocarpus siliculosus]
          Length = 2326

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +  I L F    + G G+NL    + ++ +   W+        +   + R  + G    V
Sbjct: 1181 DKDIFLFFLSTKAGGQGINL-ATADTVIIYDSDWNP-----HNDLQALARAHRIGQANKV 1234

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +Y  +++ T++E +L+  + K  ++ +++    K    
Sbjct: 1235 MIYRFVSRATVEERILEVAKKKLLLEHVVVQDGNKSMTQ 1273


>gi|228954512|ref|ZP_04116537.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805169|gb|EEM51763.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|30022310|ref|NP_833941.1| SNF2 family DNA/RNA helicase [Bacillus cereus ATCC 14579]
 gi|206971150|ref|ZP_03232101.1| putative helicase [Bacillus cereus AH1134]
 gi|218232045|ref|YP_002369033.1| putative helicase [Bacillus cereus B4264]
 gi|228910061|ref|ZP_04073881.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 200]
 gi|228922980|ref|ZP_04086273.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229071731|ref|ZP_04204946.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           F65185]
 gi|229081486|ref|ZP_04213985.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-2]
 gi|229129507|ref|ZP_04258478.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-Cer4]
 gi|229152428|ref|ZP_04280620.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1550]
 gi|229180505|ref|ZP_04307847.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           172560W]
 gi|29897867|gb|AAP11142.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus cereus ATCC
           14579]
 gi|206733922|gb|EDZ51093.1| putative helicase [Bacillus cereus AH1134]
 gi|218160002|gb|ACK59994.1| putative helicase [Bacillus cereus B4264]
 gi|228602929|gb|EEK60408.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           172560W]
 gi|228631036|gb|EEK87673.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus m1550]
 gi|228654112|gb|EEL09979.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-Cer4]
 gi|228701793|gb|EEL54280.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-2]
 gi|228711326|gb|EEL63286.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           F65185]
 gi|228836613|gb|EEM81961.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228849578|gb|EEM94412.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 200]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|46136625|ref|XP_390004.1| hypothetical protein FG09828.1 [Gibberella zeae PH-1]
          Length = 882

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 20/163 (12%)

Query: 53  DEKIKALEVII---EKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPC 99
             K +A+  I+    +   + ++V   + S L  +                    DK   
Sbjct: 709 SSKTEAMMQILKATMRKEGSKVVVFSQWTSFLNIIEAQLKADGMGYTRIDGSMKADKRDK 768

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+  + + +  ++ A  A C  GLNL    + ++    WW        IE   + R  +
Sbjct: 769 AIEALDSDPETRVMLASLAVCSVGLNLVA-ADTVILSDSWWAPA-----IEDQAIDRVHR 822

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  R   ++ L+ + +++E VL     K  +           
Sbjct: 823 LGQTRETTIFRLVMEGSVEERVLDVQSEKRELVTKAFQEKNSR 865



 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 12/103 (11%)

Query: 2   KQYHKFQRELYCDLQ--------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
           ++Y     E   +L+        G+     N   + ++  Q+ N      E         
Sbjct: 554 RKYDALLDEARGELEQWQASSQVGQKGRFQNVLERLLRLRQICNHWSLCKERVSDIL--- 610

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            K+     ++        ++       +   ++        + 
Sbjct: 611 -KLLDEHEVVPLNEKNRGLLQEALRLYIESQEECAICYDNPND 652


>gi|290960098|ref|YP_003491280.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260649624|emb|CBG72739.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 584

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN-------SDLARLQKAFPQG 91
                +   ++     K     V          +V   F          L +   A   G
Sbjct: 388 YSLMQDLPDYELSPKYKEAVAIVAKNAEQGRKTLVWTTFVRSLTTLAQMLEKFGPAVVYG 447

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T D+D    +   +    +L ++PA+ G G++L +  +  V+    +      Q ++RI
Sbjct: 448 GTPDRDEQLRRFREDPSCMVLISNPATLGEGISLHHVCHDAVYVDRDFMAGRFLQSLDRI 507

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                          V  + A+NTIDE+V  RL  K      +L+ 
Sbjct: 508 HRLG---LAPGTDTHVTVIAARNTIDEVVEIRLDQKLEFMGKILDD 550


>gi|62087684|dbj|BAD92289.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a3 variant [Homo sapiens]
          Length = 992

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V +   I +++++E +L+    K  +        K +
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKTK 991



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|124807036|ref|XP_001350892.1| DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
 gi|23497022|gb|AAN36572.1|AE014852_16 DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
          Length = 1647

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 68   AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                ++   + S L  ++                   + ++        + ++ +L    
Sbjct: 1494 DDKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISL 1553

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G GLNLQ   N +     WW+            + R  + G  + V+    I +NT+
Sbjct: 1554 KAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYAIRFIIENTV 1607

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            +E ++Q    K  + D  +  
Sbjct: 1608 EEKIIQLQNKKQLVFDSTIGD 1628


>gi|291449046|ref|ZP_06588436.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351993|gb|EFE78897.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 703

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +   E+ EA+  A  + +        +      +       K++ L  ++ +   N   +
Sbjct: 485 EFGAEDREAYGEAVASGR-------FMRMRRAAYAVPKTSAKLERLRELVGEARDNGLKV 537

Query: 72  IVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V  +F   LA +                   +    +  ++      +       G   
Sbjct: 538 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 597

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 ++++               E   V R  + G  R V V+ L+A +++D+ +++ 
Sbjct: 598 LNMQAASVVILCEPQIKPTL-----EHQAVARAHRMGQVRTVQVHRLLATDSVDQRLVEL 652

Query: 184 LRTKSTIQDL 193
           L  K  + D 
Sbjct: 653 LARKDRLFDA 662


>gi|302895297|ref|XP_003046529.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI 77-13-4]
 gi|256727456|gb|EEU40816.1| SNF2 family DNA-dependent ATPase [Nectria haematococca mpVI 77-13-4]
          Length = 1111

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 65/210 (30%), Gaps = 32/210 (15%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA- 66
             +  +  L    ++A +      K                +   H +    +E +++   
Sbjct: 891  VKHAFVQLHRREVDAEHDGPAKTKSRN------SVKNFDKYDGPHTKTRALIEELLQHKA 944

Query: 67   --------NAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEG 107
                         +V   + S L  ++           +         +     +   + 
Sbjct: 945  ASEANPSEPPYKSVVFSGWTSHLDLIELALNAAGIKFTRLDGSMSRTLRTSAMDKFREDN 1004

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + ++     + G GLNL   GN +      ++     Q I+R+      + G KR V  
Sbjct: 1005 TVHVILVSIMAGGLGLNLTA-GNSVYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVRT 1058

Query: 168  YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               I +++ +E +L+    K  +  L ++ 
Sbjct: 1059 VRYIMRDSFEEKMLELQEKKMKLASLSMDG 1088


>gi|239992059|ref|ZP_04712723.1| hypothetical protein SrosN1_32479 [Streptomyces roseosporus NRRL
           11379]
          Length = 743

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +   E+ EA+  A  + +        +      +       K++ L  ++ +   N   +
Sbjct: 525 EFGAEDREAYGEAVASGR-------FMRMRRAAYAVPKTSAKLERLRELVGEARDNGLKV 577

Query: 72  IVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V  +F   LA +                   +    +  ++      +       G   
Sbjct: 578 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 637

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 ++++               E   V R  + G  R V V+ L+A +++D+ +++ 
Sbjct: 638 LNMQAASVVILCEPQIKPTL-----EHQAVARAHRMGQVRTVQVHRLLATDSVDQRLVEL 692

Query: 184 LRTKSTIQDL 193
           L  K  + D 
Sbjct: 693 LARKDRLFDA 702


>gi|239945590|ref|ZP_04697527.1| hypothetical protein SrosN15_31682 [Streptomyces roseosporus NRRL
           15998]
          Length = 720

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +   E+ EA+  A  + +        +      +       K++ L  ++ +   N   +
Sbjct: 502 EFGAEDREAYGEAVASGR-------FMRMRRAAYAVPKTSAKLERLRELVGEARDNGLKV 554

Query: 72  IVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V  +F   LA +                   +    +  ++      +       G   
Sbjct: 555 VVFSYFREVLAAIGDALGPDVFGPLSGSVPPARRQELVDAFSSVAGHAVLLSQIQAGGTG 614

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 ++++               E   V R  + G  R V V+ L+A +++D+ +++ 
Sbjct: 615 LNMQAASVVILCEPQIKPTL-----EHQAVARAHRMGQVRTVQVHRLLATDSVDQRLVEL 669

Query: 184 LRTKSTIQDL 193
           L  K  + D 
Sbjct: 670 LARKDRLFDA 679


>gi|229192438|ref|ZP_04319401.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           10876]
 gi|228591015|gb|EEK48871.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           10876]
          Length = 545

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 323 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 382

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 383 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 439

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 440 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 491


>gi|217961719|ref|YP_002340289.1| putative helicase [Bacillus cereus AH187]
 gi|229140962|ref|ZP_04269506.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST26]
 gi|217067475|gb|ACJ81725.1| putative helicase [Bacillus cereus AH187]
 gi|228642538|gb|EEK98825.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST26]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|110755099|ref|XP_396302.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1-like [Apis mellifera]
          Length = 830

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K+K L+ ++ K       +++   F   L  L++                 +    C I
Sbjct: 628 GKLKILDELLPKLKEEGHRVLIFSQFTMILDILEEYLTIRGQTYLRLDGSTPVTDRQCLI 687

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++  +  I +      + G G+NL    + ++   + ++        ++    R  + G
Sbjct: 688 NQYMEDENIFIFLLSTKAGGLGINLTA-ADTVIIHDIDFNP-----YNDKQAEDRCHRVG 741

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            KR+V +  L++++TI+E + +  + K  ++  +    + E+  
Sbjct: 742 QKRSVSIIRLLSEDTIEEGMYEIAQDKLHLEQQITGDEENESTD 785


>gi|294948918|ref|XP_002785960.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
           marinus ATCC 50983]
 gi|239900068|gb|EER17756.1| ISWI chromatin remodeling complex ATPase ISW2, putative [Perkinsus
           marinus ATCC 50983]
          Length = 876

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEV---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            ++  ++A     + +E    +       K + L+ ++ K       +++       L  
Sbjct: 575 LMQLRKMAQHPYLFLDEYDINDDLVRVSGKFELLDRLVPKLLHFNHKVLIFSQMTCLLDI 634

Query: 84  LQKAFPQ----------GRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGN 130
           L++                +L+     +  +N+       +      + G GLNLQ   N
Sbjct: 635 LEQFLENKGLQWFRLDGSTSLEDRQSAMHRFNDPLNHDTNIFLLSTRAGGLGLNLQA-AN 693

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +   W+ +     ++   + R  + G K  V V  L     I+ L+LQ+  TK  I
Sbjct: 694 TVILYDSDWNPQ-----MDLQAMDRAHRVGQKSDVIVLRLTGMCPIERLILQKATTKRNI 748

Query: 191 QDLLLNA 197
              ++  
Sbjct: 749 DKKVIQG 755


>gi|154412505|ref|XP_001579285.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121913490|gb|EAY18299.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1421

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 36/211 (17%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALE 60
            +  E ++  + A+   K   +       D  + +                   K   L+
Sbjct: 694 KVNEETVDTAHEANDMHK---ICLHPFLIDGAEEFYTQKFRNMSRLELLLSVSAKFAWLD 750

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEW--NE 106
            I+ K       +++   F   L  L++         +              +  +   +
Sbjct: 751 RILTKLKEEGHRVLIFSQFIKLLRLLKEYCTIKGYSHELLTGQMGDVEKNAAVSRFADKD 810

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      +   GLNL    +  + F   W+ +      +     R  + G  + V 
Sbjct: 811 TSSFVFLISTRAGSEGLNLT-IADTAIIFDPDWNPQN-----DLQAQARVHRIGQTQKVD 864

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  LI   T +  +  R + K  + + +L  
Sbjct: 865 IIRLITYKTYEHEMFVRAQRKLELWERILEG 895


>gi|157114744|ref|XP_001652400.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
 gi|108883553|gb|EAT47778.1| transcriptional regulator ATRX (X-linked helicase II) [Aedes aegypti]
          Length = 1445

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             L            ++      + +N+    +  L      + G G+NL    N ++ F 
Sbjct: 1048 TLGLDYFRLDGSTAIESRNAACKVFNDDSNHRARLFLISTRAGGLGINLVA-ANRVIIFD 1106

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + W+        +   + R  + G  +  ++Y  +A  T++E + +R  TK  I   +++
Sbjct: 1107 VSWNPSH-----DIQSIFRVYRFGQIKPCYIYRFLAMGTMEEKIYERQVTKQAISKRVID 1161

Query: 197  A 197
             
Sbjct: 1162 E 1162


>gi|75760928|ref|ZP_00740938.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228902741|ref|ZP_04066888.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 4222]
 gi|74491598|gb|EAO54804.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228856928|gb|EEN01441.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           IBL 4222]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|291407890|ref|XP_002720269.1| PREDICTED: transcriptional regulator ATRX [Oryctolagus cuniculus]
          Length = 2533

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2120 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2178

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2179 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2232


>gi|281347790|gb|EFB23374.1| hypothetical protein PANDA_016786 [Ailuropoda melanoleuca]
          Length = 1005

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 832 NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQ 891

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 892 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 945

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 946 GQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 985



 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 672 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 714


>gi|228935549|ref|ZP_04098365.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228987419|ref|ZP_04147539.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157827|ref|ZP_04285902.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           4342]
 gi|228625784|gb|EEK82536.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus ATCC
           4342]
 gi|228772391|gb|EEM20837.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228824087|gb|EEM69903.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    EK      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMEKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|195569689|ref|XP_002102841.1| GD20115 [Drosophila simulans]
 gi|194198768|gb|EDX12344.1| GD20115 [Drosophila simulans]
          Length = 264

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS I
Sbjct: 14  CVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 68

Query: 191 QDLLLNA 197
           Q ++++ 
Sbjct: 69  QRMVISG 75


>gi|71277007|gb|AAZ29723.1| ATRY [Macropus eugenii]
          Length = 1771

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
            ++   D   + +E         + L++A      +E      V  + + +L++I      
Sbjct: 1302 KDFITDSDAKVLEHSGKMVLLFEILKMA------EELGDKVLVFSQSLISLDLIEDFLEL 1355

Query: 63   ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                I      P I                    +        +E+N+       L    
Sbjct: 1356 GSNEISDDKDKPRIYKGEGKWFRNIDYYRLDGSSSAQSRKKWAEEFNDETNVRGRLFLIS 1415

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              +   G+NL    N ++ F   W+        +   + R  + G  + VFVY  +AQ T
Sbjct: 1416 TKAGSLGINLVA-ANRVIVFDASWNPS-----YDIQSIFRVYRFGQSKPVFVYRFLAQGT 1469

Query: 176  IDELVLQRLRTKSTIQDLLLN 196
            +++ + +R  TK ++   +++
Sbjct: 1470 MEDKIYERQVTKQSLSFRVID 1490


>gi|228916862|ref|ZP_04080425.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842785|gb|EEM87870.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 560

 Score = 74.4 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    EK      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMEKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|322701736|gb|EFY93485.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1158

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                 +     +   +  + ++     + G GLNL   GN +      ++     Q I+R
Sbjct: 1035 MTRTARTAAMEKFREDNTVDVILVSIMAGGLGLNLTA-GNTVYVMEPQYNPAAEAQAIDR 1093

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +      + G KR V     I  ++ +E +L+    K  +  L ++ 
Sbjct: 1094 V-----HRLGQKRPVRTIRYIMHDSFEEKMLELQEKKMKLASLSMDG 1135


>gi|156096356|ref|XP_001614212.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803086|gb|EDL44485.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1529

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD---EKIKALEVIIEK 65
            +    +L  +      +   + K  QL +      + +    V       +K ++ ++  
Sbjct: 1306 KSPLDELLKKM--KKENFVYSTKLKQLFDHIQNDMQNELHIVVFSQWIGFLKIIQKLLTL 1363

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFA 114
             N    I       +  +    +             G T    P  ++ +      +L  
Sbjct: 1364 HNIPNKIYDGSLTYEERKTTLFWFNVQRGKVYQPGIGFTTPSSPIAVENF---AGKVLLC 1420

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
               + G GLNL    + +    LWW+       IE     R  + G  + V +Y  + + 
Sbjct: 1421 SLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERVHRIGQLKDVSIYKFVLEK 1474

Query: 175  TIDELVLQRLRTKSTIQDLLL 195
            T++E +LQ  ++K    + +L
Sbjct: 1475 TVEERILQIHQSKQYTANQIL 1495


>gi|16943790|emb|CAD10805.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 [Homo sapiens]
          Length = 1009

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|229013447|ref|ZP_04170584.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides DSM
           2048]
 gi|229061920|ref|ZP_04199248.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH603]
 gi|229135050|ref|ZP_04263855.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST196]
 gi|229168972|ref|ZP_04296689.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH621]
 gi|228614564|gb|EEK71672.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH621]
 gi|228648435|gb|EEL04465.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST196]
 gi|228717363|gb|EEL69033.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH603]
 gi|228747859|gb|EEL97725.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides DSM
           2048]
          Length = 560

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   II             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIKEVDDKVIIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|163941989|ref|YP_001646873.1| non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864186|gb|ABY45245.1| Non-specific serine/threonine protein kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 560

 Score = 74.4 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +IE+ +   II             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKANKALELIEEVDDKVIIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +      +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|325096295|gb|EGC49605.1| transcription termination factor 2 [Ajellomyces capsulatus H88]
          Length = 1092

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 26/216 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R  Y   Q   +       +  K  Q      Y       K +    +  +E   
Sbjct: 876  YTAITRRGYEKFQESQLSRREGPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 929

Query: 64   --EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW-NEGKI 109
                      IV   + S L  ++ A                TL +    I  +  +  +
Sbjct: 930  EAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTRLDGTMTLKQRNAAIDAFREDDNV 989

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+ +      ++     Q ++R+      + G  R V    
Sbjct: 990  TILLATLGAGGVGLNLTA-GSRVYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1043

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I +++I+E + +  R K  + D+ LN  + +   +
Sbjct: 1044 FIMKDSIEEKIAELARKKQQMADMSLNRGRLDRREL 1079


>gi|308068514|ref|YP_003870119.1| Hypothetical helicase [Paenibacillus polymyxa E681]
 gi|305857793|gb|ADM69581.1| Hypothetical helicase [Paenibacillus polymyxa E681]
          Length = 604

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           + K +    +I + N   +I+   +            D       +  G    +    + 
Sbjct: 376 NSKAEKALELIRQMN-EKVIIFTEYRATQEYLLNYFRDRGLSAVPYRGGMNRGRKDWMMD 434

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+I ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 435 LFR-GRIQVMIAT-EAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 HDVNIFNLSTTGTIEEHILHLLHEKINMFEMVIGGL 522


>gi|237838391|ref|XP_002368493.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211966157|gb|EEB01353.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
           ME49]
          Length = 1345

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 57/228 (25%)

Query: 28  KTVKCLQLANGAVYYD---------------------------EEKHWKEVHDEKIKALE 60
             ++  +  N    +                            ++         KI A++
Sbjct: 411 LFMQLRKCCNHPALFHLGASCTSAVSVGTRDSEETRSDSVAEGDDAESLLRDSSKIAAVD 470

Query: 61  VII--EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGK 108
            I+         ++V     + L  ++    +               +    I  ++   
Sbjct: 471 AILSFYLPRQEKVVVFSFSTAMLDLVEDYLDEKGIVSARLDGRMGDGERRAAIAAFSAQP 530

Query: 109 IP---------------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                            +      + G+GL L +  ++ VF        +    +ER  +
Sbjct: 531 SENARQSPQGSHEACAAVFLVSVRAGGYGLTLSHCASVCVFLEGG---GDGNPQVERQAI 587

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R  + G  + V V  LI ++T++E++  R R K  +   +L+  + +
Sbjct: 588 ARLYRQGQTKKVKVIRLITRSTVEEVLYWRGRQKLKLVADVLSEDEND 635


>gi|71755921|ref|XP_828875.1| DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834261|gb|EAN79763.1| DNA repair protein, putative [Trypanosoma brucei]
          Length = 762

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 53  DEKIKALEV----IIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDP 98
             K++ +      + +      +I+  HF S           L           +L    
Sbjct: 554 STKLQMILDSIQAMKKNCPDDKMIIFSHFTSFMDVISVALDNLDIAHLRLDGTMSLSSRN 613

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +     + ++ A   + G GLNL    N ++    WW+       IE   V R  
Sbjct: 614 LVIRCFQSSDDVRVILASKTATGVGLNLTA-ANHVLVVDPWWNPA-----IEEQAVHRCY 667

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G ++ V V  +I ++TI++   +  R K    D +L A
Sbjct: 668 RIGQRKHVHVKRIIIEDTIEQYCYEICRRKKEFGDAILRA 707



 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEE 45
           K+Y+         L+       AF+  +   +  Q         + 
Sbjct: 424 KRYNSILARSRSALESSERKEAAFHIFAMMTRLRQACCHPWISRDR 469


>gi|47567784|ref|ZP_00238492.1| helicase/SNF2 family domain protein [Bacillus cereus G9241]
 gi|47555461|gb|EAL13804.1| helicase/SNF2 family domain protein [Bacillus cereus G9241]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    EK      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMEKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|317146955|ref|XP_001821784.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1117

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +  +   I +L A   + G GLNL    + +      ++     Q ++R+    
Sbjct: 1001 RQKALQEFHDNNDITILLATIGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV---- 1055

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1056 -HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1104


>gi|221106342|ref|XP_002157301.1| PREDICTED: similar to excision repair cross-complementing rodent
           repair deficiency complementation group 6, partial
           [Hydra magnipapillata]
          Length = 1132

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWN 105
           +  L   ++  N   +I +          +     G  + +              + ++ 
Sbjct: 378 LVYLMDNLKAENHRTVIFSQSIKMLDIIQKVLSELGHLILRVDGRMKNPQDRENVLDKFK 437

Query: 106 EG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           E  +  +L         G+ L    N LV F   W+        +   V R  + G ++ 
Sbjct: 438 EDLRYNVLLMTTQIGSVGITLT-CANRLVIFDPSWNPGT-----DAQAVDRVYRIGQEKD 491

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V VY L+   +++E + ++   K+ I      A
Sbjct: 492 VVVYRLVTCGSVEEKIYRKQIFKNAIMKQTTGA 524


>gi|194384686|dbj|BAG59503.1| unnamed protein product [Homo sapiens]
          Length = 654

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 241 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 299

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 300 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 353


>gi|575251|emb|CAA86571.1| helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|238496787|ref|XP_002379629.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220694509|gb|EED50853.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1117

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +  +   I +L A   + G GLNL    + +      ++     Q ++R+    
Sbjct: 1001 RQKALQEFHDNNDITILLATIGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV---- 1055

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  R V     + +++I+E + +  + K  + D+ +N  K +   V
Sbjct: 1056 -HRIGQTREVTTVQFLMKDSIEEKIFELAKKKQQLADMSMNQRKLDKREV 1104


>gi|213402947|ref|XP_002172246.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000293|gb|EEB05953.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
           yFS275]
          Length = 749

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 72/212 (33%), Gaps = 28/212 (13%)

Query: 5   HKFQRELYCDLQG----ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            KF ++   + +       +   N    + + +Q        D   +       K + L+
Sbjct: 404 DKFWKDRTLENEKTFPLSTLTELNCLCNSTRLIQ---HQENTDLSLNDLIASSSKFEFLK 460

Query: 61  VIIEKANAA--PIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG- 107
            ++ +   +    ++   F   L                       +     + ++N   
Sbjct: 461 SLLLEFKNSQLKCVIVSQFTETLNLIEILLKHLLITHCRLDGSTPTNTRQSLVDQFNCST 520

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              + +      S G GLNL  G N L+ F   W+        +   + R  + G  R+V
Sbjct: 521 YEHLSVFLLSNKSGGAGLNL-VGANRLILFEPSWNPA-----YDLQALGRIYRYGQNRSV 574

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Y L++   +DE +  R  TK+ + +  +++
Sbjct: 575 LIYTLLSTGMLDEQIYIRQHTKTGLSNAFMDS 606


>gi|328855031|gb|EGG04160.1| hypothetical protein MELLADRAFT_117156 [Melampsora larici-populina
            98AG31]
          Length = 1185

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 51   VHDEKIKALEVIIE----KANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDK 96
            +   K+  L   ++    +A    +++   + S L                +        
Sbjct: 1004 IPSAKLVYLLEELKRLRVEAPDDRVVILSQWTSFLDIVAQYLDENDFQYARYQGSMDSKA 1063

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                + E+ +G  PL+       G GLNL   GN ++   L W         E     R 
Sbjct: 1064 RTAAVHEFQKGDKPLMLMSLKCGGVGLNLTR-GNRVINLDLAWTPAS-----EAQAFDRV 1117

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G  + V V  L+  NT+++ +L+    K  I D  L     + +
Sbjct: 1118 HRLGQTKIVNVKRLMINNTVEQRMLELQLKKQMITDNALGEGSGKRL 1164


>gi|303314479|ref|XP_003067248.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106916|gb|EER25103.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1193

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +L     + G GLNL    N +     WW        +E   + R  + G  + 
Sbjct: 1085 EQPSPNVLLISLRAGGVGLNLTA-ANHVYMMDPWWSFA-----VEAQAIDRVHRMGQLKD 1138

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V   + +N+I+E +L+    K  I   L
Sbjct: 1139 VKVTRFVVKNSIEERMLRVQERKMMIAGSL 1168


>gi|156088833|ref|XP_001611823.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
 gi|154799077|gb|EDO08255.1| SNF2 family N-terminal domain containing protein [Babesia bovis]
          Length = 1744

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVF 134
           + +                     I+E+N    P         + G G+NL    N +V 
Sbjct: 877 YCNARGWKYMRLDGSTNKLIRELDIREFNSPSSPYFVYLISTRAGGLGINLTA-ANHVVL 935

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+       I+   + R  + G KR+V ++ ++++ T++E +      K  +  LL
Sbjct: 936 FDEDWNP-----FIDLQAIDRAHRIGQKRSVHIWKVVSEWTVEERMALCREKKLHLDKLL 990

Query: 195 LNALKK 200
           +N+ ++
Sbjct: 991 INSQRQ 996


>gi|195152255|ref|XP_002017052.1| GL22086 [Drosophila persimilis]
 gi|194112109|gb|EDW34152.1| GL22086 [Drosophila persimilis]
          Length = 1712

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                +             +    +  +N +  I +L       G GLNL  G + ++F  
Sbjct: 1525 RHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTLVGGLGLNLT-GADTVIFVE 1583

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W+      M +   + R  + G K+ V VY LI +N+++E ++   + K    + +++
Sbjct: 1584 HDWNP-----MKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVS 1638

Query: 197  ALKK 200
            A   
Sbjct: 1639 AENA 1642


>gi|167773597|gb|ABZ92233.1| helicase-like transcription factor [synthetic construct]
          Length = 1008

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 835 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 894

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 895 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 948

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 949 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 988



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 675 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 717


>gi|296227865|ref|XP_002759553.1| PREDICTED: helicase-like transcription factor [Callithrix jacchus]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           + Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 RIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|21071052|ref|NP_003062.2| helicase-like transcription factor [Homo sapiens]
 gi|21071054|ref|NP_620636.1| helicase-like transcription factor [Homo sapiens]
 gi|60390864|sp|Q14527|HLTF_HUMAN RecName: Full=Helicase-like transcription factor; AltName:
           Full=DNA-binding protein/plasminogen activator inhibitor
           1 regulator; AltName: Full=HIP116; AltName: Full=RING
           finger protein 80; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3
 gi|119599295|gb|EAW78889.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
 gi|119599298|gb|EAW78892.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
 gi|119599299|gb|EAW78893.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_a [Homo
           sapiens]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|328848776|gb|EGF97974.1| hypothetical protein MELLADRAFT_84130 [Melampsora larici-populina
           98AG31]
          Length = 615

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 74/259 (28%), Gaps = 63/259 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
            Y  F R+   + + +  +      +        N  + + + +   +            
Sbjct: 344 LYQNFLRQFGVE-RKQKFQGGEFFKQLTNLRMTCNHPLLFRQIEQGVDAENQPINLIEQK 402

Query: 51  ---------VHDEK-----------------IKALEVIIEKANAAPIIVAYHFNSDLARL 84
                    +H+ K                 +  +    +       ++   + S +  +
Sbjct: 403 LGIKLPDERIHNSKVRDAIPTDWKLSPKIAYLVHMLQKKKSHGGGKSVIYTQWKSFIDWI 462

Query: 85  QKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             AF       +                    +  +        + G GLN+    + + 
Sbjct: 463 IMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAFVVSIEAGGVGLNMT-CADEVY 521

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                W+ +  QQ ++R+      + G  + V V++++   +I++ +    + K+ +   
Sbjct: 522 LMDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVTGQSIEQHLYNVQKRKAALAKR 576

Query: 194 LL-------NALKKETIHV 205
           ++          K E + V
Sbjct: 577 VITLTVPTEELEKAEALRV 595


>gi|114589744|ref|XP_001138277.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 1 [Pan troglodytes]
 gi|114589746|ref|XP_001138954.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 5 [Pan troglodytes]
 gi|114589748|ref|XP_001138604.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 2 [Pan troglodytes]
 gi|114589750|ref|XP_001138690.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 3 [Pan troglodytes]
 gi|114589752|ref|XP_001138877.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 4 [Pan troglodytes]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLVEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|531196|gb|AAA67436.1| ATPase [Homo sapiens]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|158255898|dbj|BAF83920.1| unnamed protein product [Homo sapiens]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           + Y   + E    +        + A   +     ++  Q+   
Sbjct: 676 RIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 718


>gi|115384256|ref|XP_001208675.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196367|gb|EAU38067.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1181

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            ++    +  +   I +L A   + G GLNL    + +      ++     Q I+R+    
Sbjct: 1065 RNKALAEFHSNDTITVLLATIGAGGVGLNLTA-ASKVYIMEPQYNPAAVAQAIDRV---- 1119

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  R V     + + +I+E + +  + K  + DL +N  K +   V
Sbjct: 1120 -HRIGQTREVTTVQYLMKGSIEEKIFELAKKKQQLADLSMNRGKLDKKEV 1168


>gi|27882409|gb|AAH44659.1| Helicase-like transcription factor [Homo sapiens]
 gi|119599297|gb|EAW78891.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3, isoform CRA_c [Homo
           sapiens]
          Length = 1008

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 835 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 894

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 895 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 948

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 949 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 988



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 675 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 717


>gi|229047922|ref|ZP_04193498.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH676]
 gi|228723379|gb|EEL74748.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus AH676]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|71001976|ref|XP_755669.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66853307|gb|EAL93631.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
 gi|159129727|gb|EDP54841.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1200

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            ++             +L A   + G GLNL    + +      ++     Q I+R+    
Sbjct: 1084 RNKALEDFHTNDNTTILLATIGAGGVGLNLTS-ASKVYIMEPQYNPAAVAQAIDRV---- 1138

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              + G  R V     I + +I+E + +  + K  + D+ +N  K +   +
Sbjct: 1139 -HRLGQTREVTTVQFIMKGSIEEKIFELAKKKQQLADMSMNRGKLDKKEI 1187


>gi|164659870|ref|XP_001731059.1| hypothetical protein MGL_2058 [Malassezia globosa CBS 7966]
 gi|159104957|gb|EDP43845.1| hypothetical protein MGL_2058 [Malassezia globosa CBS 7966]
          Length = 526

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVF 134
           F                 D     ++++N+      +      + G GLNLQ   + ++ 
Sbjct: 7   FLRFRGIKYLRLDGSTKPDDRSVLLRQFNDPNSEYDVFIRSTRAGGLGLNLQS-ADTVII 65

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +   W+  +     +     R  + G K  V +  L+ + ++++ +L R ++K  I   +
Sbjct: 66  YDSDWNPHQ-----DLQAQDRAHRIGQKVEVRILRLVTEKSVEKTILARAQSKLEINGKV 120

Query: 195 LNALK 199
           + A K
Sbjct: 121 IQAGK 125


>gi|114589754|ref|XP_516811.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a3 isoform 6 [Pan troglodytes]
          Length = 1008

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 835 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLVEIPLKASGFVFTRLDGSMAQKKRVESIQ 894

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 895 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 948

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 949 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 988



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 675 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 717


>gi|229086801|ref|ZP_04218964.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-44]
 gi|228696522|gb|EEL49344.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-44]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------F 88
            +    +K      + K      +I++     +++   + +    LQ            F
Sbjct: 344 YIDVLMDKINHIPFNSKANQALELIKEI-DDKVVIFTEYRATQMYLQWFLKQHGISSVPF 402

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I
Sbjct: 403 RGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRI 459

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 460 GRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|85105641|ref|XP_962010.1| hypothetical protein NCU05246 [Neurospora crassa OR74A]
 gi|28923601|gb|EAA32774.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|118496048|dbj|BAF37540.1| DNA repair and recombination protein RAD5C [Neurospora crassa]
          Length = 1111

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                 +     +   +  + ++     + G GLNL    + +      ++     Q ++R
Sbjct: 986  MTRTARTAAMDKFREDPSVQVILVSIMAGGLGLNLTT-ASSVYVMEPQFNPAAEAQAVDR 1044

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +      + G KR V     I  N+ +E +L+    K  +  L ++ 
Sbjct: 1045 V-----HRLGQKRPVRTVRYIMANSFEEKMLRLQEKKKKLASLSMDG 1086


>gi|67515525|ref|XP_657648.1| hypothetical protein AN0044.2 [Aspergillus nidulans FGSC A4]
 gi|74681569|sp|Q5BHD6|RAD5_EMENI RecName: Full=DNA repair protein rad5
 gi|40746207|gb|EAA65363.1| hypothetical protein AN0044.2 [Aspergillus nidulans FGSC A4]
 gi|259489769|tpe|CBF90313.1| TPA: DNA repair protein rad5 (EC 3.6.1.-)
            [Source:UniProtKB/Swiss-Prot;Acc:Q5BHD6] [Aspergillus
            nidulans FGSC A4]
          Length = 1202

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    + +     WW        IE   + R  + G  R V V   
Sbjct: 1101 VLLISLKAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDVNVVRF 1154

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+E +L+    K  I   L
Sbjct: 1155 IVKDSIEERMLRVQERKMGIAGSL 1178


>gi|328856775|gb|EGG05895.1| hypothetical protein MELLADRAFT_87660 [Melampsora larici-populina
            98AG31]
          Length = 1354

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 22/177 (12%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP-----IIVAYHFNSDLAR------- 83
            AN A    +  +      ++    E       A        +V   +   L R       
Sbjct: 1133 ANPASMNYDPLNMIFDVQDRHDEEEDPEHDYKACKGSVVKSVVFSQWTKMLDRIGDALDE 1192

Query: 84   ----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                  +        +++        + K  +L     + G GLNL      +     +W
Sbjct: 1193 FNIGYGRLDGTMSRPERNKAMEDLKTDPKCEVLLVSLRAGGVGLNLT-CAQRVYLMEPFW 1251

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +       +E   V R  + G  + V +   I   ++++ +L+  + K+ + ++ L 
Sbjct: 1252 NPA-----VENQAVDRVHRLGQTKPVRMIRYIIAGSVEQNMLEIQKRKTELANMSLG 1303


>gi|224136438|ref|XP_002326860.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222835175|gb|EEE73610.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 576

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           KF   +  ++     EA       ++ ++L              +  +EK+      +E 
Sbjct: 348 KFVDRMELEMLRSKPEAGVKTKFLMELIRLC-------------QARNEKVLVFSQYLEP 394

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGL 123
            N     +  +F+               +D+    I+ +N       +L A   +C  G+
Sbjct: 395 LNLVIKQLESNFSWIQGEDILYMHGKLKIDERQILIKHFNNANSNAKVLLASTRACSEGI 454

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL  G + +V   + W+       +ER  ++R  + G ++ V++Y+LI   T++E     
Sbjct: 455 NL-VGASRVVLLDVLWNPS-----VERQAISRAYRLGQEKVVYIYHLITSGTMEEEKYFC 508

Query: 184 LRTKSTIQDLLLNALKKETIH 204
              K  + +L+ +   + + H
Sbjct: 509 QVEKERLSNLVFDCTNRSSNH 529


>gi|219113657|ref|XP_002186412.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583262|gb|ACI65882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 509

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 71/218 (32%), Gaps = 48/218 (22%)

Query: 20  IEAFNSASKTVKC---LQLANGAVYYDEEKHW-KEVH------------DEKIKALEVII 63
           IE   + S+T K     +  N    + E       VH              K   L+ ++
Sbjct: 293 IENGRTLSQTNKLMNHRKNINHPFLFGEPIDPASGVHLGTAHPQLLVRASGKFALLDRML 352

Query: 64  EK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN------ 105
            +   +   +++     S L                      +D+    + ++N      
Sbjct: 353 SRLYRDGHQVLIFSQMTSVLNVMEDYLLFRNWNFCRIDGSTNIDERQRQMDQFNAEKTAG 412

Query: 106 --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   + +  +      + G G+NL    + ++ F   W+        +   + R  
Sbjct: 413 ENGRRSKADDRHFVFLLSTRAGGLGINLTS-ADTVIIFDSDWNP-----HADSQAMDRAH 466

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G    V VY L+  N++D  ++++  +K  ++ + +
Sbjct: 467 RLGQDLPVAVYRLLTVNSVDIEMMEKQISKKKLERMTI 504


>gi|228960494|ref|ZP_04122144.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228967268|ref|ZP_04128304.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|229111701|ref|ZP_04241249.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-15]
 gi|296504708|ref|YP_003666408.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis BMB171]
 gi|228671695|gb|EEL26991.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-15]
 gi|228792637|gb|EEM40203.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228799191|gb|EEM46158.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325760|gb|ADH08688.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis BMB171]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|70943600|ref|XP_741826.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520453|emb|CAH80960.1| hypothetical protein PC000341.04.0 [Plasmodium chabaudi chabaudi]
          Length = 154

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 68  AAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHP 116
               ++   + S L  ++                   + ++       N+ ++ +L    
Sbjct: 1   DDKCLIFSQYCSMLDLIEYHLKKNNIICSKLLGYMSMVSRNNILYNFNNDKQLRVLLISL 60

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNLQ   N +     WW+            + R  + G  + V+    I +NT+
Sbjct: 61  KAGGEGLNLQ-VANRIFIVDPWWNPAAEL-----QAIQRAHRIGQTKTVYAIRFIIENTV 114

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E ++Q    K  + D  + 
Sbjct: 115 EEKIIQLQNKKQLVFDCTIG 134


>gi|331251008|ref|XP_003338107.1| SNF2/helicase domain-containing protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309317097|gb|EFP93688.1| SNF2/helicase domain-containing protein [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 712

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 28/180 (15%)

Query: 26  ASKTVKCLQLANGAVYYDE----EKHWKEVHDEKIKALEVIIEKANA-------APIIVA 74
             +     Q  N  ++  +    +K+W+     K+  L   +E+             +V 
Sbjct: 532 FKQLTMIRQFCNHPIFARDEIPHQKNWRWQDSAKLVHLVDNLERFLRGGRGILRPKAVVF 591

Query: 75  YHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             F + L  ++                     +D    +   +    +L     + G G+
Sbjct: 592 SSFVAFLEIIEKALKEKQMGCTWLIGTLGIAKRDENLARFRTDPNCNILLGSIQAAGVGI 651

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           +L      +      W+       +E   V R  + G    V VY    Q +++  + Q 
Sbjct: 652 DL-RCAQNVYMMEPNWNPA-----MENQAVDRLYRLGQTNEVHVYRYYVQGSLEMNIHQA 705


>gi|301783337|ref|XP_002927083.1| PREDICTED: helicase-like transcription factor-like [Ailuropoda
           melanoleuca]
          Length = 1007

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 834 NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQ 893

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 894 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 947

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 948 GQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 987



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 674 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 716


>gi|294463936|gb|ADE77489.1| unknown [Picea sitchensis]
          Length = 377

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 28  KTVKCLQLANGA---------VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH 76
             ++  +  N            Y+            K + L+ +++   A    +++   
Sbjct: 90  LMLQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQ 149

Query: 77  FNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIP--LLFAHPASCGHGLN 124
           +   L  L     +                    I+++N+      +      + G G+N
Sbjct: 150 WTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGIN 209

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    +  + +   W+ +     ++   + R  + G  + V VY L   ++ +  +L+  
Sbjct: 210 LTA-ADTCIIYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLCTSHSAECRMLKVA 263

Query: 185 RTKSTIQDLLLN 196
             K  ++ +++ 
Sbjct: 264 FDKLKLERVVIE 275


>gi|73946419|ref|XP_533502.2| PREDICTED: similar to RAD26L hypothetical protein [Canis
           familiaris]
          Length = 1402

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A                   + 
Sbjct: 504 KMKVLQQLLNHCRKNKD-KILLFSFSTKLLDVLQQYCMAAGF--------------DYRR 548

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 549 LDGSTKSEERIKIVKEFNSTQDVNICLVSTMAGGVGLNF-VGANVVVLFDPTWNPAN--- 604

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V+ LI+  T++E++  R   K  +  +++ +   +
Sbjct: 605 --DLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 657


>gi|71651388|ref|XP_814373.1| DNA excision/repair protein SNF2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70879339|gb|EAN92522.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 729

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 37/223 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
           +QY  F +    D+   + +           ++  +       ++ ++E           
Sbjct: 347 QQYFSFLKTERVDVTLRSADTSQPLVLLTSLMRTCDHPWLSLSDEAYREAMQNPLASPEA 406

Query: 51  -------VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQG---------- 91
                  ++  KI +   ++ K        +V       L  L  A              
Sbjct: 407 NRSCGDALNSSKISSALALVVKCIGEQRKTLVFSRSKRLLDLLAVALRCWLIDFARLDGD 466

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++   T+Q +N   ++ +        G GL      + ++     W+        + 
Sbjct: 467 VPAEERLKTVQGFNQSERLLVCLLTTQVGGVGLT-VEAASAVIIMDPSWNPSS-----DA 520

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G  R V VY LI   T++E V +    K      
Sbjct: 521 QAIDRVHRIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 563


>gi|67540104|ref|XP_663826.1| hypothetical protein AN6222.2 [Aspergillus nidulans FGSC A4]
 gi|40738446|gb|EAA57636.1| hypothetical protein AN6222.2 [Aspergillus nidulans FGSC A4]
          Length = 1933

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              ++       ++    +L A   + G GLNL    + +      ++     Q I+R+  
Sbjct: 1815 PARNKALDNFRDDNNTTILLATIGAGGVGLNLTA-ASHVYIMEPQYNPAAVAQAIDRV-- 1871

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                + G  R V     I +++I+E + +  + K  + D+ LN  K +   V
Sbjct: 1872 ---HRLGQTREVTTVQFIMKDSIEEKIAELAKKKQQLADMSLNRGKLDKAEV 1920


>gi|193084005|gb|ACF09679.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-202-A2]
          Length = 569

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           I  +E  +        I      S       +   G+T       I  + +G   L+ A 
Sbjct: 409 IMEIEESVVVFCHHKAIHRLLHESLQEFHPSSIIGGQTDKVRQLNIDRFQDGDTKLMIAG 468

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W        I R    R  + G K  VF YYLI   T
Sbjct: 469 LRAGNLGINLTR-AKYVIFGELDWSPA-----IHRQAEDRLHRIGQKNTVFAYYLIGNGT 522

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           +DE V   L  KS   D +++ +++
Sbjct: 523 LDEHVANILVDKSYEIDTIMDEVRE 547


>gi|218899388|ref|YP_002447799.1| putative helicase [Bacillus cereus G9842]
 gi|218544732|gb|ACK97126.1| putative helicase [Bacillus cereus G9842]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|229019449|ref|ZP_04176271.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1273]
 gi|229025691|ref|ZP_04182096.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1272]
 gi|228735630|gb|EEL86220.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1272]
 gi|228741861|gb|EEL92039.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           AH1273]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 16/200 (8%)

Query: 3   QYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y+  ++  E         I+  +      K     N        K  K +   K    +
Sbjct: 321 VYYSLKKHVEKRQKENEHYIKEPHIDVLMDKI----NH--IPFNSKANKALELIKEIDDK 374

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           VII     A  +    F          F  G    K     + +   +  +L A   + G
Sbjct: 375 VIIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGG 432

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G+NLQ+  + ++ + L W+    +Q I RI      + G K  V +Y L  ++T++E +
Sbjct: 433 EGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHI 486

Query: 181 LQRLRTKSTIQDLLLNALKK 200
           L+ L  K  + + ++  L +
Sbjct: 487 LKLLYEKINLFERVIGELDE 506


>gi|228941387|ref|ZP_04103939.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974320|ref|ZP_04134889.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980912|ref|ZP_04141216.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           Bt407]
 gi|228778848|gb|EEM27111.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           Bt407]
 gi|228785370|gb|EEM33380.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818313|gb|EEM64386.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942008|gb|AEA17904.1| SNF2 family DNA/RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKELFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|297672219|ref|XP_002814205.1| PREDICTED: helicase-like transcription factor-like [Pongo abelii]
          Length = 1009

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 836 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 895

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 896 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 949

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 989



 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 676 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQMCCH 718


>gi|156055468|ref|XP_001593658.1| hypothetical protein SS1G_05086 [Sclerotinia sclerotiorum 1980]
 gi|154702870|gb|EDO02609.1| hypothetical protein SS1G_05086 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1012

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLL 112
                  +++  H    L  LQ  F                +    T+ ++N +    + 
Sbjct: 608 WHEEGDKVLIFSHSVKLLRMLQHLFQSTSYNVSFLSGEMKYEDRQDTVDDFNYDPNQFIF 667

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLN+    N +V F   W+        +     R  + G  R V  + L++
Sbjct: 668 LISTKAGGVGLNITS-ANKVVIFDPNWNPS-----YDLQAQDRAYRIGQLRDVDSFRLVS 721

Query: 173 QNTIDELVLQRLRTKSTIQD 192
             TI+E+V  R   K    +
Sbjct: 722 AGTIEEVVYARQIYKQQQAN 741


>gi|310793157|gb|EFQ28618.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1813

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R          + +    I+++N G   L     A+ G GLN+ +G N +V F   ++  
Sbjct: 1318 RKVARLDGNTPISQRQQNIKDFNSGDTQLYIISTAAGGTGLNI-FGANRVVIFDFKYNPI 1376

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              Q       + R  + G ++ V+VY  I   T ++ +  R   K+ +   +++
Sbjct: 1377 HEQ-----QAIGRAYRIGQQKPVYVYTFICGGTYEQTLHDRAIFKTHLASRVVD 1425


>gi|261334803|emb|CBH17797.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
          Length = 762

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 53  DEKIKALEV----IIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDP 98
             K++ +      + +      +I+  HF S           L           +L    
Sbjct: 554 STKLQMILDSIQAMKKNCPDDKMIIFSHFTSFMDVISVALDNLDIAHLRLDGTMSLSSRN 613

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+ +     + ++ A   + G GLNL    N ++    WW+       IE   V R  
Sbjct: 614 LVIRCFQSSDDVRVILASKTATGVGLNLTA-ANHVLVVDPWWNPA-----IEEQAVHRCY 667

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G ++ V V  +I ++TI++   +  R K    D +L A
Sbjct: 668 RIGQRKHVHVKRIIIEDTIEQYCYEICRRKKEFGDAILRA 707



 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)

Query: 2   KQYHKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEE 45
           K+Y+         L+       AF+  +   +  Q         + 
Sbjct: 424 KRYNSILARSRSALESSERKEAAFHIFAMMTRLRQACCHPWISRDR 469


>gi|256961060|ref|ZP_05565231.1| Snf2 family helicase [Enterococcus faecalis Merz96]
 gi|293384550|ref|ZP_06630416.1| Snf2 family protein [Enterococcus faecalis R712]
 gi|293386779|ref|ZP_06631350.1| Snf2 family protein [Enterococcus faecalis S613]
 gi|312906376|ref|ZP_07765384.1| protein, SNF2 family [Enterococcus faecalis DAPTO 512]
 gi|312979465|ref|ZP_07791153.1| SNF2 family N-terminal domain protein [Enterococcus faecalis DAPTO
            516]
 gi|256951556|gb|EEU68188.1| Snf2 family helicase [Enterococcus faecalis Merz96]
 gi|291078096|gb|EFE15460.1| Snf2 family protein [Enterococcus faecalis R712]
 gi|291083782|gb|EFE20745.1| Snf2 family protein [Enterococcus faecalis S613]
 gi|310627530|gb|EFQ10813.1| protein, SNF2 family [Enterococcus faecalis DAPTO 512]
 gi|311287836|gb|EFQ66392.1| SNF2 family N-terminal domain protein [Enterococcus faecalis DAPTO
            516]
          Length = 1016

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKK 1010


>gi|259479572|tpe|CBF69917.1| TPA: single-stranded DNA-dependent ATPase (Eurofung) [Aspergillus
            nidulans FGSC A4]
          Length = 1170

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              ++       ++    +L A   + G GLNL    + +      ++     Q I+R+  
Sbjct: 1052 PARNKALDNFRDDNNTTILLATIGAGGVGLNLTA-ASHVYIMEPQYNPAAVAQAIDRV-- 1108

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                + G  R V     I +++I+E + +  + K  + D+ LN  K +   V
Sbjct: 1109 ---HRLGQTREVTTVQFIMKDSIEEKIAELAKKKQQLADMSLNRGKLDKAEV 1157


>gi|170592673|ref|XP_001901089.1| DNA excision repair protein ERCC-6 [Brugia malayi]
 gi|158591156|gb|EDP29769.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
          Length = 147

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               I +        G G+NL    N +V F   W+        +     R    G +RA
Sbjct: 9   QNNGIFIFLLTTRVSGLGINLTA-ANRVVIFDPDWNPST-----DIQARERAWPIGQERA 62

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V +Y L+   TI+E +      K  + +  L+  ++
Sbjct: 63  VTIYRLLTGGTIEEKIYHTXIFKVFLSNRTLDDPRQ 98


>gi|66044767|ref|YP_234608.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255474|gb|AAY36570.1| SNF2-related:Helicase, C-terminal [Pseudomonas syringae pv.
           syringae B728a]
          Length = 650

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 457 QIERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALASDLIDPEAEE 640


>gi|328768354|gb|EGF78401.1| hypothetical protein BATDEDRAFT_90880 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1225

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +    ++   +  + ++     S G GLNL    + +     +W+    QQ I+R+    
Sbjct: 1055 RSEAMLKFKTDPSVTIMLISLRSGGVGLNLTA-ASRVYLMEPYWNPAVEQQAIDRV---- 1109

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G    V     I + +I+E +    R K  +     
Sbjct: 1110 -HRMGQTLPVVSIRFIVKGSIEENIQALQRKKLEMAKATF 1148


>gi|196034943|ref|ZP_03102350.1| putative helicase [Bacillus cereus W]
 gi|195992482|gb|EDX56443.1| putative helicase [Bacillus cereus W]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDILMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|118479411|ref|YP_896562.1| SNF2 family helicase [Bacillus thuringiensis str. Al Hakam]
 gi|118418636|gb|ABK87055.1| helicase, SNF2 family [Bacillus thuringiensis str. Al Hakam]
          Length = 560

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDILMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|224081014|ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222855713|gb|EEE93260.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1058

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 64/243 (26%)

Query: 2   KQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE--------------- 45
           + Y  F R E+            +  +      ++ +  +   +                
Sbjct: 638 QLYEAFLRSEIVLSAFDG-----SPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNP 692

Query: 46  ---------------------KHWKEVH---DEKIKALEVIIEK--ANAAPIIVAYHFNS 79
                                  ++E H     KI  +  +++        +++      
Sbjct: 693 EDAAVAEKLAMHLADVADRTDTDFQEKHDNISCKISFILSLLDNLIPEGHNVLIFSQTRK 752

Query: 80  DLARLQ----------KAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYG 128
            L  +Q                         + ++ EG   P+        G GL L   
Sbjct: 753 MLNLIQESLVSNGYEFIRIDGTTKATDRTKIVSDFQEGNGAPIFLLTSQVGGLGLTLTK- 811

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++     W+     Q ++R       + G  + V VY L+   +++E + ++   K 
Sbjct: 812 ADRVIVVDPAWNPSTDNQSVDR-----AYRIGQMKDVVVYRLMTCGSVEEKIYRKQIFKG 866

Query: 189 TIQ 191
            + 
Sbjct: 867 GLF 869


>gi|8977885|emb|CAB95769.1| hypothetical protein [Homo sapiens]
          Length = 594

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 407 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 466

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 467 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 521

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 522 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 569


>gi|218905364|ref|YP_002453198.1| putative helicase [Bacillus cereus AH820]
 gi|229123746|ref|ZP_04252941.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           95/8201]
 gi|218536349|gb|ACK88747.1| putative helicase [Bacillus cereus AH820]
 gi|228659881|gb|EEL15526.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           95/8201]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDILMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|30264301|ref|NP_846678.1| helicase, putative [Bacillus anthracis str. Ames]
 gi|47529745|ref|YP_021094.1| helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187129|ref|YP_030381.1| helicase [Bacillus anthracis str. Sterne]
 gi|49480946|ref|YP_038291.1| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141268|ref|YP_085562.1| SNF2 family helicase [Bacillus cereus E33L]
 gi|165873273|ref|ZP_02217882.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167634666|ref|ZP_02392986.1| putative helicase [Bacillus anthracis str. A0442]
 gi|167638582|ref|ZP_02396858.1| putative helicase [Bacillus anthracis str. A0193]
 gi|170687388|ref|ZP_02878605.1| putative helicase [Bacillus anthracis str. A0465]
 gi|170709332|ref|ZP_02899748.1| putative helicase [Bacillus anthracis str. A0389]
 gi|177655894|ref|ZP_02937086.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190566152|ref|ZP_03019071.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|196041595|ref|ZP_03108887.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|196046379|ref|ZP_03113605.1| putative helicase [Bacillus cereus 03BB108]
 gi|225866210|ref|YP_002751588.1| putative helicase [Bacillus cereus 03BB102]
 gi|227817002|ref|YP_002817011.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|228929272|ref|ZP_04092299.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947944|ref|ZP_04110231.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093287|ref|ZP_04224403.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-42]
 gi|229186470|ref|ZP_04313633.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus BGSC
           6E1]
 gi|229601677|ref|YP_002868519.1| putative helicase [Bacillus anthracis str. A0248]
 gi|254683989|ref|ZP_05147849.1| putative helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254721823|ref|ZP_05183612.1| putative helicase [Bacillus anthracis str. A1055]
 gi|254736337|ref|ZP_05194043.1| putative helicase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741375|ref|ZP_05199062.1| putative helicase [Bacillus anthracis str. Kruger B]
 gi|254753990|ref|ZP_05206025.1| putative helicase [Bacillus anthracis str. Vollum]
 gi|254757861|ref|ZP_05209888.1| putative helicase [Bacillus anthracis str. Australia 94]
 gi|301055721|ref|YP_003793932.1| putative helicase [Bacillus anthracis CI]
 gi|30258946|gb|AAP28164.1| putative helicase [Bacillus anthracis str. Ames]
 gi|47504893|gb|AAT33569.1| putative helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181056|gb|AAT56432.1| helicase, putative [Bacillus anthracis str. Sterne]
 gi|49332502|gb|AAT63148.1| possible helicase, SNF2 family [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974737|gb|AAU16287.1| possible helicase, SNF2 family [Bacillus cereus E33L]
 gi|164710990|gb|EDR16558.1| putative helicase [Bacillus anthracis str. A0488]
 gi|167513430|gb|EDR88800.1| putative helicase [Bacillus anthracis str. A0193]
 gi|167530118|gb|EDR92853.1| putative helicase [Bacillus anthracis str. A0442]
 gi|170125758|gb|EDS94669.1| putative helicase [Bacillus anthracis str. A0389]
 gi|170668583|gb|EDT19329.1| putative helicase [Bacillus anthracis str. A0465]
 gi|172079927|gb|EDT65032.1| putative helicase [Bacillus anthracis str. A0174]
 gi|190563071|gb|EDV17037.1| putative helicase [Bacillus anthracis Tsiankovskii-I]
 gi|196022849|gb|EDX61530.1| putative helicase [Bacillus cereus 03BB108]
 gi|196027583|gb|EDX66198.1| putative helicase [Bacillus cereus NVH0597-99]
 gi|225789095|gb|ACO29312.1| putative helicase [Bacillus cereus 03BB102]
 gi|227007674|gb|ACP17417.1| putative helicase [Bacillus anthracis str. CDC 684]
 gi|228596984|gb|EEK54641.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus BGSC
           6E1]
 gi|228690092|gb|EEL43888.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-42]
 gi|228811931|gb|EEM58265.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830562|gb|EEM76172.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229266085|gb|ACQ47722.1| putative helicase [Bacillus anthracis str. A0248]
 gi|300377890|gb|ADK06794.1| possible helicase, SNF2 family [Bacillus cereus biovar anthracis
           str. CI]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +K      + K      +I++ +   +I             F          F 
Sbjct: 344 HIDILMDKINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|322706831|gb|EFY98411.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1158

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               + +     +   +  + ++     + G GLNL   GN +      ++     Q I+R
Sbjct: 1035 MTRMARTAAMEKFREDNTVEVILVSIMAGGLGLNLTA-GNTVYVMEPQYNPAAEAQAIDR 1093

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +      + G KR V     I Q++ +E +L+    K  +  L ++ 
Sbjct: 1094 V-----HRLGQKRPVRTVRYIMQDSFEEKMLELQEKKMKLASLSMDG 1135


>gi|326775329|ref|ZP_08234594.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326655662|gb|EGE40508.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 743

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 65/190 (34%), Gaps = 22/190 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +L  E+ EA+  A  + + L++           +       K+  L  ++++   +   +
Sbjct: 525 ELGAEDREAYREAVASGRFLRM-------RRAAYAVPEASAKLGRLRELVDEASESGLKV 577

Query: 72  IVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V  +F   LA + +                 +    +  ++      +       G   
Sbjct: 578 VVFSYFREVLATVGEALGPDAFGPLSGSVAPARRQELVDAFSAVDGHAVLLSQIQAGGTG 637

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 ++++               E   V R  + G  R V V+ L+A +++D+ +++ 
Sbjct: 638 LNMQAASVVILCEPQIKPTL-----EHQAVARAHRMGQVRPVQVHRLLATDSVDQRLVEL 692

Query: 184 LRTKSTIQDL 193
           L  K  + D 
Sbjct: 693 LARKDRLFDA 702


>gi|194228051|ref|XP_001502735.2| PREDICTED: similar to ATRX [Equus caballus]
          Length = 2491

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2078 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2136

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2137 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2190


>gi|119619019|gb|EAW98613.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_c [Homo sapiens]
          Length = 2446

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|74007785|ref|XP_860057.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 4 [Canis familiaris]
          Length = 2482

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2069 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2127

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2128 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2181


>gi|312069902|ref|XP_003137898.1| SNF2 family domain-containing protein [Loa loa]
 gi|307766934|gb|EFO26168.1| SNF2 family domain-containing protein [Loa loa]
          Length = 840

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG-----------NILVFFSLWWD 140
            +++     +++N +  I +L            L +             +I++F    W+
Sbjct: 612 PVNERHTVAEKFNIDPSIHVLILTTNIPECKTTLVFTAIGGEGLNLIGADIVIFLEHDWN 671

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                 + +   + R  + G + AV VY LI + +I++ +++  + K+   + L+ A  +
Sbjct: 672 P-----VKDLQAMDRAHRIGQRCAVNVYRLITEGSIEQKIMRLQKFKTNTANALVGADNR 726


>gi|152976625|ref|YP_001376142.1| SNF2-related protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025377|gb|ABS23147.1| SNF2-related protein [Bacillus cytotoxicus NVH 391-98]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
            + K      +I+K N   +I             F          F  G    K     +
Sbjct: 357 FNSKANQTLELIKKINDKVVIFTEYRASQMYLQWFLKQHGISSVPFRGGFKRGKKDWMKE 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +    +L A   + G G+NLQ+  N ++ + L W+    +Q I RI      + G K
Sbjct: 417 LFQQ-HAQVLIAT-EAGGEGINLQF-CNHMINYDLPWNPMRLEQRIGRI-----HRLGQK 468

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 469 NDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|315032634|gb|EFT44566.1| protein, SNF2 family [Enterococcus faecalis TX0017]
          Length = 1016

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 3    QYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
             Y  + +++  D+   +         +  +   +  Q+      + E+         K++
Sbjct: 842  VYLAYLKQMQADVSQMDQATFKKNRMSILAGLTRLRQICCDPRLFIEDYT---GGSGKVE 898

Query: 58   ALEVIIE--KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
             ++  +   K N   +++   F S L+ L+                            +N
Sbjct: 899  QVKDFLVAAKENNRRVLLFSQFTSMLSILEKELNELGLETFYLRGSTKPQDRLTMANAFN 958

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            EG+  +      + G GLNL  G + ++ + LWW+       +E     R  + G K+
Sbjct: 959  EGEKDVFLISLKAGGTGLNLT-GADTVILYDLWWNPA-----VEEQAAGRAHRMGQKK 1010


>gi|228992971|ref|ZP_04152895.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus
           pseudomycoides DSM 12442]
 gi|228999020|ref|ZP_04158602.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock3-17]
 gi|229006568|ref|ZP_04164204.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock1-4]
 gi|228754707|gb|EEM04116.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock1-4]
 gi|228760637|gb|EEM09601.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus mycoides
           Rock3-17]
 gi|228766828|gb|EEM15467.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus
           pseudomycoides DSM 12442]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------F 88
            +    +K      + K      +I++     +++   + +    LQ            F
Sbjct: 344 YIDVLMDKINHIPFNTKANQALELIKEI-DDKVVIFTEYRATQMYLQWFLKQHGISSVPF 402

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    K     + +      +L A   + G G+NLQ+  + ++ + L W+    +Q I
Sbjct: 403 RGGFKRGKKDWMKELFQN-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRI 459

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 460 GRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|221043716|dbj|BAH13535.1| unnamed protein product [Homo sapiens]
          Length = 596

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 409 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 468

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 469 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 523

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 524 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 571


>gi|84997071|ref|XP_953257.1| SWI/SNF-related chromatin remodelling factor (ISWI homologue)
            [Theileria annulata strain Ankara]
 gi|65304253|emb|CAI76632.1| SWI/SNF-related chromatin remodelling factor (ISWI homologue),
            putative [Theileria annulata]
          Length = 1972

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            D K+   +V+I       +     +  +                    I+E+N       
Sbjct: 992  DSKVYMHKVLIFTQFQLVLDELETYCINRGWKYMRLDGSTNKLIRELDIREFNSSNSNYF 1051

Query: 113  --FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                   + G G+NL    N +V +   W+       I+   + R  + G KR V ++ L
Sbjct: 1052 VYLISTRAGGLGINLTA-ANHVVLYDEDWNP-----FIDLQAIDRAHRIGQKRNVHIWKL 1105

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLN 196
            I++ T++E +      K  +  L+L+
Sbjct: 1106 ISEWTVEERMALIREKKLQLDKLILH 1131


>gi|329935238|ref|ZP_08285204.1| bifunctional protein [Streptomyces griseoaurantiacus M045]
 gi|329305061|gb|EGG48920.1| bifunctional protein [Streptomyces griseoaurantiacus M045]
          Length = 726

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------------AFPQGRTLD 95
              K+  L  I+E+   N    +V  +F   L  ++                        
Sbjct: 528 KSAKLGRLREIVEEAGENGQRTVVFSYFRDVLDVVRDALTARPGGGAPVFGPLTGSVPPG 587

Query: 96  KDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    + ++     P +L A   + G GLN+Q   +++V               E   V 
Sbjct: 588 RRQRIVDDFAATPGPAVLLAQIQAAGVGLNMQA-ASVVVLCEPQIKPTL-----EHQAVA 641

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R  + G  R V V+ L+A   +DE +++ L  K+ + D 
Sbjct: 642 RAHRMGQVRPVGVHRLLATGGVDERLVRMLERKTRLFDA 680


>gi|324998247|ref|ZP_08119359.1| helicase domain-containing protein [Pseudonocardia sp. P1]
          Length = 688

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F     R            +        N+  + +      + G G+NLQ   +I++  
Sbjct: 540 MFVRQGMRFASIRGDQTAAARQRNIDAFTNDPDVAVAVCSLTAAGVGINLQVASDIVLAE 599

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             W   E+         + R  + G    V  + +IA  TID  + + +  K+ + D  L
Sbjct: 600 LSWTAAEQT------QAIDRCHRIGQTAPVTAWRVIAAQTIDARIAELIDGKAGLADQAL 653

Query: 196 NALKKE 201
           + ++ +
Sbjct: 654 DGIEDD 659


>gi|294889866|ref|XP_002772973.1| hypothetical protein Pmar_PMAR009695 [Perkinsus marinus ATCC 50983]
 gi|239877632|gb|EER04789.1| hypothetical protein Pmar_PMAR009695 [Perkinsus marinus ATCC 50983]
          Length = 247

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G + ++F+   W+       ++R  + R  + G  R V ++ L++ +TI+E +  +   
Sbjct: 17  SGADCVIFYDSDWNPA-----MDRQAMDRCHRIGQTRDVHIFRLLSHHTIEENIFHKQLQ 71

Query: 187 KSTIQDLLLNA 197
           K  + D++++ 
Sbjct: 72  KRMLDDVVVDE 82


>gi|148684275|gb|EDL16222.1| stretch responsive protein 278, isoform CRA_a [Mus musculus]
          Length = 708

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 516 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 560

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 561 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 616

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 617 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 669


>gi|314055214|ref|YP_004063552.1| SNF2/helicase domain protein [Ostreococcus tauri virus 2]
 gi|313575105|emb|CBI70118.1| SNF2/helicase domain protein [Ostreococcus tauri virus 2]
          Length = 513

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYYDE--------EK 46
           + Y    ++    ++     A +            ++  Q+      Y E        + 
Sbjct: 269 QLYEFVFKDAQDTIKDAFRHAVSLNSKNMVILECLLRARQVMIWPAMYLEGIAKQNGTQP 328

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------RTLDKDP 98
                   K++ L  +I+       +V   F  ++  +Q+                ++D 
Sbjct: 329 EQWIGRSNKMETLFNMIKAHPNEKTLVFCQFRGEMDYIQQNMECPTFRIDGSVPKDERDN 388

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I         +      S G GLNLQ     +      W+            V R  +
Sbjct: 389 QVIAFKKAPPGAVFIIQIKSGGQGLNLQE-ATRVYITGPSWNPATEL-----QAVGRSHR 442

Query: 159 AGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V+V  LI + T     ++E ++     KS +   +LN  + E
Sbjct: 443 TGQTKQVYVKKLIYKETDTFVSVEEEMMALQGHKSIVCSKVLNDERIE 490


>gi|193083817|gb|ACF09499.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           SAT1000-23-F7]
          Length = 571

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           I  +E  +        I      S       +   G+T       I  +  G   L+ A 
Sbjct: 409 IMEIEESVVVFCHHKAIHRLLHESLQEFHPSSIIGGQTDKDRQANIDRFQNGDTKLMIAG 468

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W        I R    R  + G K  VF YYLI   T
Sbjct: 469 LRAGNLGINLTR-AKYVIFGELDWSPA-----IHRQAEDRLHRIGQKNTVFAYYLIGNGT 522

Query: 176 IDELVLQRLRTKSTIQDLLLNAL 198
           +DE V   L  KS   D +++ +
Sbjct: 523 LDEHVANILVDKSYEIDTIMDEV 545


>gi|74007779|ref|XP_538084.2| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 1 [Canis familiaris]
          Length = 2489

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2076 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2134

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2135 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2188


>gi|229146796|ref|ZP_04275161.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST24]
 gi|228636624|gb|EEK93089.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           BDRD-ST24]
          Length = 560

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 17/177 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLAR 83
             + +  +    +K      + K      +I++ +   +I             F      
Sbjct: 338 HYIKDPHIDVLMDKINHIPFNSKATKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGI 397

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 398 SSVPFRGGFKRGKKDWMKEIFQN-RAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMR 454

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +Q I RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 455 LEQRIGRI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|169614245|ref|XP_001800539.1| hypothetical protein SNOG_10260 [Phaeosphaeria nodorum SN15]
 gi|160707308|gb|EAT82595.2| hypothetical protein SNOG_10260 [Phaeosphaeria nodorum SN15]
          Length = 1073

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            +  L+ I +    A  +V   F S L  ++            F    +       + E+ 
Sbjct: 934  LTHLKHIRKDDKTAKSVVFSQFTSFLDLIEPALARDHIPFLRFDGSLSQKARAHILTEFT 993

Query: 106  EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                P +L     + G GLNL      +     WW        +E   + R  + G +R 
Sbjct: 994  SSPKPYVLLLSLRAGGVGLNLT-CAQNVFMMDPWWSFA-----VEAQAIDRVHRMGQERD 1047

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTI 190
            V V   + + +I+E +L+    K  +
Sbjct: 1048 VRVIRFVVEGSIEEKMLRIQDRKKFM 1073


>gi|156554795|ref|XP_001606060.1| PREDICTED: similar to helicase [Nasonia vitripennis]
          Length = 1053

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 70/248 (28%), Gaps = 74/248 (29%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------------------- 52
            + I+ +      ++  Q+              +V                          
Sbjct: 796  DEIDNYYILVLILRLRQMCCHPSLIKSMLDNPDVDLGSTENLIENKNCREEILKELDKLT 855

Query: 53   ----------------------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA 82
                                          K++A+  ++         +I+   +   L 
Sbjct: 856  SDDEDEIDEEMVRGVMSRTNRVFDKDRRSSKVRAVLDVVNSVLEKGEKVIIVSQWTKFLD 915

Query: 83   RL----------QKAFPQGRTLDKDPC-TIQEWNEGKIP--LLFAHPASCGHGLNLQYGG 129
             +                G+   K+    +   N+      +L     + G GLNL  G 
Sbjct: 916  IIASNLCLMEGAYFEMFTGKVAVKNRQEIVDRLNDSDNKLNVLLLSLTAGGVGLNL-VGA 974

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            N L+   L W+ +      E   + R  + G +  V +Y  + ++TI+E V +    K  
Sbjct: 975  NNLLLIDLHWNPQL-----ETQAMDRLYRFGQENNVHIYKFVCRDTIEEKVKKLQDMKLA 1029

Query: 190  IQDLLLNA 197
            I + +L+ 
Sbjct: 1030 IANNVLSG 1037


>gi|331226481|ref|XP_003325910.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309304900|gb|EFP81491.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1449

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 74   AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            A  F+    + +K        +++        + K  +L     + G GLNL      + 
Sbjct: 1306 ASAFDEFNIQYKKLDGTMSRAERNRSMEALKADPKCEVLLVSLRAGGVGLNLT-CAQRVY 1364

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                +W+       +E   V R  + G  + V +   I   ++++ +L+  + K+ + ++
Sbjct: 1365 LMEPFWNPA-----VENQAVDRVHRLGQTKPVRMIRYIISGSVEQNMLEIQKRKTELANM 1419

Query: 194  LL-NALKKETI 203
             L   L KE +
Sbjct: 1420 SLGQTLSKEEL 1430


>gi|159482707|ref|XP_001699409.1| hypothetical protein CHLREDRAFT_152316 [Chlamydomonas reinhardtii]
 gi|158272860|gb|EDO98655.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1513

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 6/112 (5%)

Query: 72   IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
             +     ++    +          +        N+    +      +   G+NL    N 
Sbjct: 1349 WLRSRLQAEGFGHRTITGDMPPKRRTEAITSFQNDPNTCVFLLSVRAGAVGINLTA-ANH 1407

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            +       +        E   + R  + G  R V V  L  + +++E++++ 
Sbjct: 1408 VFLLEPCMNPAT-----EHQAIGRAWRMGQSRPVTVKRLFVKGSVEEVIMKV 1454


>gi|158120894|gb|ABW16947.1| helicase DNA-binding protein [Caenorhabditis remanei]
          Length = 167

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
             K+  +E ++ K   +   +++       L  L++         +              
Sbjct: 14  SGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLITMSYPFERIDGNVRGDLRQAA 73

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I  +++      +      + G G+NL    + ++ F   W+ +      +     R  +
Sbjct: 74  IDRFSKENSDRFVFLLCTRAGGLGINLTA-ADTVIIFDSDWNPQN-----DLQAQARCHR 127

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G K+ V VY LI  NT +  +  +   K  +   +L +
Sbjct: 128 IGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQS 166


>gi|74007783|ref|XP_860017.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 3 [Canis familiaris]
          Length = 2501

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2088 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2146

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2147 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2200


>gi|1658307|emb|CAA86572.1| helicase-like transcription factor [Homo sapiens]
          Length = 887

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 714 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 773

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 774 CFQNTEAGSPTIMLLSLRAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 827

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 828 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 867



 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 554 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 596


>gi|182434811|ref|YP_001822530.1| hypothetical protein SGR_1018 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463327|dbj|BAG17847.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 743

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 64/190 (33%), Gaps = 22/190 (11%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           +L  E+ EA+  A  + +  ++           +       K+  L  ++++   +   +
Sbjct: 525 ELGAEDREAYREAVASGRFQRM-------RRAAYAVPEASAKLGRLRELVDEASESGLKV 577

Query: 72  IVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +V  +F   LA + +                 +    +  ++      +       G   
Sbjct: 578 VVFSYFREVLATVGEALGPDAFGPLSGSVAPARRQELVDAFSAVDGHAVLLSQIQAGGTG 637

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 ++++               E   V R  + G  R V V+ L+A +++D+ +++ 
Sbjct: 638 LNMQAASVVILCEPQIKPTL-----EHQAVARAHRMGQVRPVQVHRLLATDSVDQRLVEL 692

Query: 184 LRTKSTIQDL 193
           L  K  + D 
Sbjct: 693 LARKDRLFDA 702


>gi|74007791|ref|XP_860168.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 7 [Canis familiaris]
          Length = 2433

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2020 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2078

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2079 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2132


>gi|319655732|ref|NP_956947.2| transcriptional regulator ATRX [Danio rerio]
          Length = 2013

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
             F +             T  K      + +  +  L      +   G+NL    N ++ F
Sbjct: 1620 WFRNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGSLGINLVA-ANRVIIF 1678

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               W+        +   + R  + G  + V+VY  +AQ T++E +  R   K ++   ++
Sbjct: 1679 DASWNPS-----YDIQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVAKQSLSFRVV 1733

Query: 196  N 196
            +
Sbjct: 1734 D 1734


>gi|221066987|ref|ZP_03543092.1| helicase domain protein [Comamonas testosteroni KF-1]
 gi|220712010|gb|EED67378.1| helicase domain protein [Comamonas testosteroni KF-1]
          Length = 503

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           ++Y ++ G+      +  K V+  +   G  V Y  E       D+K+      +    A
Sbjct: 297 DVYKEIYGDM--TLQAMPKIVRLRKCLEGLKVPYLVETVQAMGEDDKLIIFCEYMSTVEA 354

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 127
               +A      L     +     +L +    +  +  +  I +      + G G+ L  
Sbjct: 355 LKQALAS-----LGVGCVSLVGSDSLKRRQAAVDAFQRDASIKVFIGTTMAAGVGITLTA 409

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             NI+ F S+ W          R    R  + G  R V V   I Q TIDE VLQ+   K
Sbjct: 410 -ANIVAFASMPWTPALM-----RQAEDRAYRLGQIRDVLVLVPIIQGTIDEGVLQQQENK 463

Query: 188 STIQDLLLNALKK 200
            T +  ++ A KK
Sbjct: 464 HTTEIEVVEAAKK 476


>gi|74007787|ref|XP_860092.1| PREDICTED: similar to transcriptional regulator ATRX isoform 1
            isoform 5 [Canis familiaris]
          Length = 2460

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2047 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2105

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2106 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2159


>gi|293331535|ref|NP_001169906.1| hypothetical protein LOC100383801 [Zea mays]
 gi|224032283|gb|ACN35217.1| unknown [Zea mays]
          Length = 466

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 17/177 (9%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
              D + +WK+    K     +   +      IV   F S    L+  F Q         
Sbjct: 288 FQVDAKNNWKDSCKVKTLVTMLESLQRKQEKSIVFSQFTSFFDLLEIRFTQKGIKFLRFD 347

Query: 98  --------PCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      ++E++E +   +L     + G GLNL    + +     WW+    +Q I
Sbjct: 348 GKLSQKHKEKVLKEFSESQDKLVLMMSLKAGGVGLNLTA-ASNVFMMDPWWNPAVEEQAI 406

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            RI      + G KR V V   I + T++E + Q    K  +    L   +     +
Sbjct: 407 MRI-----HRIGQKREVRVKRFIVKGTVEERMQQVQMRKQRMVSGALTDEEIRGARI 458


>gi|238062909|ref|ZP_04607618.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
 gi|237884720|gb|EEP73548.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
          Length = 795

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------KDPCTIQ 102
            K++ L  II++   N   ++V   F   L R++ +  +   +               + 
Sbjct: 598 AKVERLREIIQEAADNGWKVVVFSFFLEVLERVRVSLQEDTPVFLLSGAVPVAARQQVVD 657

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +++      +L +     G GLNL    +I+V               E   + R  + G 
Sbjct: 658 DFSGTDGHAVLVSQIGVGGVGLNLPA-ASIVVLTEPQLTPAH-----EEQAIRRCYRMGQ 711

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R V V+ L+A+NT+D+ +L+ L  KS +   
Sbjct: 712 TRGVRVHRLLARNTVDQRLLEMLERKSALIRA 743


>gi|304407151|ref|ZP_07388805.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
 gi|304344138|gb|EFM09978.1| SNF2-related protein [Paenibacillus curdlanolyticus YK9]
          Length = 606

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
           + K +    +I +     +I+   + +    L +           +  G    K    + 
Sbjct: 383 NTKAEKAMELIREI-DDKVIIFTEYRATQEYLLQYFRSHGLQAVPYRGGMNRGKKDWMMD 441

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+  +L A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G K
Sbjct: 442 LFR-GRAQVLIAT-EAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQK 493

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V +Y L    TI+E ++  L  K  + +L++  L
Sbjct: 494 HDVRIYNLCTLGTIEEHIVNLLHEKINLFELVIGEL 529


>gi|297469909|ref|XP_002707323.1| PREDICTED: transcriptional regulator ATRX [Bos taurus]
 gi|297492973|ref|XP_002700028.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            (RAD54 homolog, S. cerevisiae) isoform 1 [Bos taurus]
 gi|296470861|gb|DAA12976.1| ATP-dependent helicase ATRX isoform 1 [Bos taurus]
          Length = 2479

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2066 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2124

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2125 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2178


>gi|281353705|gb|EFB29289.1| hypothetical protein PANDA_018856 [Ailuropoda melanoleuca]
          Length = 2482

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2069 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2127

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2128 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2181


>gi|229104857|ref|ZP_04235517.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-28]
 gi|228678574|gb|EEL32791.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-28]
          Length = 560

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFP 89
            +    +       + K      +I++ +   +I             F          F 
Sbjct: 344 HIDVLMDNINHIPFNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFR 403

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K     + + +    +L A   + G G+NLQ+  + ++ + L W+    +Q I 
Sbjct: 404 GGFKRGKKDWMKELFQK-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIG 460

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI      + G K  V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 461 RI-----HRLGQKNDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|74007789|ref|XP_860124.1| PREDICTED: similar to transcriptional regulator ATRX isoform 2
            isoform 6 [Canis familiaris]
          Length = 2395

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1982 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2040

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2041 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2094


>gi|301786781|ref|XP_002928805.1| PREDICTED: transcriptional regulator ATRX-like [Ailuropoda
            melanoleuca]
          Length = 2488

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2075 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2133

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2134 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2187


>gi|149055561|gb|EDM07145.1| alpha thalassemia/mental retardation syndrome X-linked homolog
           (human) [Rattus norvegicus]
          Length = 883

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                +E+N+       L      +   G+NL    N ++ F  
Sbjct: 470 RNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 528

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 529 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 582


>gi|109131297|ref|XP_001099874.1| PREDICTED: transcriptional regulator ATRX isoform 4 [Macaca mulatta]
          Length = 2490

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2077 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2135

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2136 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2189


>gi|297684878|ref|XP_002820041.1| PREDICTED: hypothetical protein LOC100434553 [Pongo abelii]
          Length = 1549

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 509 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 553

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 554 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN--- 609

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 610 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 662


>gi|328872521|gb|EGG20888.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 2077

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 19/182 (10%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
               IE         K L+     V  +E           +  LE  ++            
Sbjct: 1795 KGVIEHSTKMVILFKLLEQC---VALNERVVLFTSSIATLNLLEYFLQLREGFK------ 1845

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +                       I ++N+    I L      +   G NL  GG  ++ 
Sbjct: 1846 WRQ--GVDYFRLDGTTRPQDRQIMIHKYNDLTNSIKLFLISTKAGSLGTNLT-GGTRVIL 1902

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            F L W+      + ER  V R  + G  + V+VY +I   T++E +  RL +K  +    
Sbjct: 1903 FDLMWNP-----VHERQAVFRCFRIGQTKPVYVYTIITAATLEENMYPRLISKQQLAKRT 1957

Query: 195  LN 196
            ++
Sbjct: 1958 ID 1959


>gi|313238451|emb|CBY13525.1| unnamed protein product [Oikopleura dioica]
          Length = 590

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 25/189 (13%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDE------EKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           +   +   +      + N               +  ++ +     LE ++ ++    I++
Sbjct: 367 MAKSSPLVQCTLLNMICNCPRIMPNYLVGDTHNNDSDLKNFDCVPLEELLAESA--KILI 424

Query: 74  AYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHG 122
             +    L  ++K                          +   +  I +          G
Sbjct: 425 FSNSKKILTIIEKLLSGKNIKYDRIDGTIQPKERNNKVHRFQTDSTIKVCLLTTGVGAVG 484

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L L      ++ F  +W+  +     +   V R  + G K AV V+ LI   TI+E +  
Sbjct: 485 LTLTA-ATRVIVFDPYWNPSK-----DDQAVDRAYRIGQKNAVVVFRLITCETIEEKIYS 538

Query: 183 RLRTKSTIQ 191
           +   K +I 
Sbjct: 539 KQLFKKSII 547


>gi|297469911|ref|XP_592333.4| PREDICTED: transcriptional regulator ATRX isoform 2 [Bos taurus]
 gi|297492975|ref|XP_002700029.1| PREDICTED: alpha thalassemia/mental retardation syndrome X-linked
            (RAD54 homolog, S. cerevisiae) isoform 2 [Bos taurus]
 gi|296470862|gb|DAA12977.1| ATP-dependent helicase ATRX isoform 2 [Bos taurus]
          Length = 2441

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2028 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2086

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2087 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2140


>gi|29567040|ref|NP_818603.1| gp65 [Mycobacterium phage Barnyard]
 gi|29425765|gb|AAN02119.1| gp65 [Mycobacterium phage Barnyard]
          Length = 653

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 2   KQYHKFQRELYCDLQ-----GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           KQY +  ++    L+      + +    S ++ V+  Q+A  A+         E+   KI
Sbjct: 430 KQYDQILKDAVITLESLAGEKDEVVVNGSLAEMVRLKQVAGSAL---GLDVKPELPSNKI 486

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEW 104
           + ++  + +        +VA  F   L  L +   +               +      E+
Sbjct: 487 EWIKNFLSERISAGTKTVVASQFTQFLELLSRECDKAGIRHYLYTGKTVGSERARIKHEF 546

Query: 105 NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  ++  +  S G  L L    + +V     W  ++ +         R        
Sbjct: 547 QSESGEMVVLLNTKSGGLSLTL-DAADDVVVCDQTWIPDDQE-----QVENRAYGRERDH 600

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V ++ L +  TIDE +      +      +L++ + 
Sbjct: 601 NVNIWNLCSLGTIDEDIAVLNLQREGDIFAVLDSARG 637


>gi|57113917|ref|NP_001009018.1| transcriptional regulator ATRX [Pan troglodytes]
 gi|38502929|sp|Q7YQM4|ATRX_PANTR RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP
 gi|33354055|dbj|BAC81111.1| ATRX [Pan troglodytes]
          Length = 2492

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|326779112|ref|ZP_08238377.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326659445|gb|EGE44291.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 611

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 68/232 (29%), Gaps = 39/232 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
           + Y           +    +        ++ L  A       E     E           
Sbjct: 346 EIYDALVGRYSARAEAARDDFDALGKAMLRLLMAATSPALLAEGTSRYEPLTYQVPPLDV 405

Query: 51  VHDEKIKALEVIIEKA------------------NAAPIIVAYHFN-------SDLARLQ 85
            H + +  L   +                          +V   F           A  +
Sbjct: 406 PHGDSLYTLMRDLPNYELSPKYQEALSIVAANAEQGRKTLVWTTFVRSLSTMERMFAGYE 465

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            A   G T D+     +   +    +L ++PA+ G G++L +  +  V+    +      
Sbjct: 466 PAVVHGGTPDRAEEIRRFREDPDCSVLLSNPATLGEGISLHHVCHDAVYVDRDFMAGRFL 525

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q ++RI        G +  V V  L ++ T+DE+V  RL  K      +L+ 
Sbjct: 526 QSLDRIHRLGLA-PGTETNVTV--LASRGTVDEVVALRLEEKLEFMGRILDD 574


>gi|2306766|gb|AAC51655.1| zinc finger helicase [Homo sapiens]
          Length = 2492

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|33354053|dbj|BAC81110.1| ATRX [Homo sapiens]
 gi|133923365|gb|ABO43036.1| alpha thalassemia/mental retardation syndrome X-linked [Homo sapiens]
          Length = 2492

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|157823928|ref|NP_001099948.1| helicase-like transcription factor [Rattus norvegicus]
 gi|149048534|gb|EDM01075.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a, member 3 (predicted) [Rattus
           norvegicus]
          Length = 974

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++                    K   +IQ
Sbjct: 801 NALMNALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 860

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 861 CFQNTDAGSPTIMLLSLKAGGVGLNLCA-ASRVFLMDPAWNPAAEDQCFDRC-----HRL 914

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V +   I +++++E +L+    K  +        K +
Sbjct: 915 GQKQEVIITKFIVKDSVEENMLKIQNMKRELAAGAFGTKKTD 956



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 7/80 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   + E    +        + A   +     ++  Q+    V+              
Sbjct: 641 KIYQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQICCH-VHLPTNGTSSSDPSRS 699

Query: 56  IKALEVIIEKANAAPIIVAY 75
               E+         +I++ 
Sbjct: 700 DTPEELRKMLVTKMKLILSS 719


>gi|109131301|ref|XP_001099769.1| PREDICTED: transcriptional regulator ATRX isoform 3 [Macaca mulatta]
          Length = 2452

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2039 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2097

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2098 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2151


>gi|20336209|ref|NP_000480.2| transcriptional regulator ATRX isoform 1 [Homo sapiens]
 gi|311033500|sp|P46100|ATRX_HUMAN RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP; AltName: Full=Znf-HX
 gi|6960326|gb|AAB49970.2| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|57208647|emb|CAI40710.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57210059|emb|CAI42674.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57284090|emb|CAI43115.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|119619017|gb|EAW98611.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_a [Homo sapiens]
 gi|119619021|gb|EAW98615.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 2492

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|332025027|gb|EGI65214.1| Transcription termination factor 2 [Acromyrmex echinatior]
          Length = 916

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPL 111
           +K     +I+ +  +   ++A H  S        F     +      ++ +N       +
Sbjct: 757 QKGNDKLIIVSQWTSLLEVIASHLPSIKGATFSKFTGNVPIKDRQGIMESFNSRNFGPRI 816

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G GLNL  GGN L+ F + W+ +   Q  +RI      + G  + V+VY  I
Sbjct: 817 LLLSLTAGGVGLNL-IGGNHLLLFDIHWNPQLETQAQDRI-----YRFGQTKNVYVYKFI 870

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             NTI+E +      K  I   +L+      +
Sbjct: 871 CVNTIEERIKALQERKLQIAKNVLSGTTSRVV 902



 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 4/46 (8%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
           + Q++L       +I+        ++  Q+             +++
Sbjct: 640 EAQKKLLA--LHADIKTHEILMLLLRLRQVCCHPALIHAMLDQEDL 683


>gi|149248584|ref|XP_001528679.1| DNA repair protein RAD5 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146448633|gb|EDK43021.1| DNA repair protein RAD5 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1241

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 22/170 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------- 85
            N  +Y  +           I+ L+++ E++    +IV   F+S L  ++           
Sbjct: 1053 NFQIYLYDPNRSSSKIQALIRHLKLLQEQSPNLKVIVFSQFSSYLDIMETELKLTSDEFH 1112

Query: 86   -KAFPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               F     ++     +  +N     GKI +L     + G GLNL    +       WW 
Sbjct: 1113 VYKFDGRLNMNDRSKLLAAFNAPVTSGKISILLLSLKAGGVGLNLTT-ASRAFMMDPWWS 1171

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 Q I+RI      + G    V V   I +N+I+  +L+    K  I
Sbjct: 1172 PSIEDQAIDRI-----HRIGQNDTVKVVRFIMENSIETKMLKIQERKKQI 1216


>gi|289650008|ref|ZP_06481351.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 650

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 36/203 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TID+ + Q L  K  +   L++
Sbjct: 613 DTIDQQLWQMLMDKRALASDLID 635


>gi|88855390|ref|ZP_01130054.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88815297|gb|EAR25155.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 714

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I  + N+ ++ ++ A   + G GLNLQ   N+++    W + E+         + R
Sbjct: 593 RQNAIDSFANDPEVAVVVASLTAAGVGLNLQAASNVVLAELSWTNAEQT------QAIDR 646

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + G +  V  + +IA +TID  + + + +K+ +    L+   ++ I
Sbjct: 647 VHRIGQELPVTAWRIIAAHTIDARIAELIDSKAGLAARALDGSDEDVI 694


>gi|299747149|ref|XP_001841249.2| DNA repair protein rad16 [Coprinopsis cinerea okayama7#130]
 gi|298407389|gb|EAU80544.2| DNA repair protein rad16 [Coprinopsis cinerea okayama7#130]
          Length = 976

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N  ++ +      + G  LNL    + +     WW+     Q ++RI      + G +R 
Sbjct: 886 NNVEVTVFLVSLKAGGVALNLTE-ASRVYLMDSWWNPAVEFQAMDRI-----HRLGQRRP 939

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           V    L+ +++I+  ++Q    KS + D  L+
Sbjct: 940 VEAIKLVVEDSIESRIVQLQEKKSAMIDATLS 971



 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 23/172 (13%)

Query: 8   QRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +R+    L    +     N  S   +  Q+A         K             +     
Sbjct: 666 KRQFATYLDQGTVLNNYSNIFSLLTRMRQMACHPDLVIRSKANASTF-----VPDE---A 717

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--PCTIQEWNEGKIPLLFAHPASCGHGL 123
                  +   F  D  + +      R   K      ++   +  +  L         G 
Sbjct: 718 GEGMVCRLCNEFAEDAIQSKCHHVFDRECIKQYLEAALETQPDCPVCHLPLTIDL--EGP 775

Query: 124 NLQYGGNILV---------FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            L+   +++              W    + + ++E +   RQ+ A  K  VF
Sbjct: 776 ALEVEESVVTARQGILGRLNLDKWRSSSKIEALVEELSNLRQKDATTKSIVF 827


>gi|156061829|ref|XP_001596837.1| hypothetical protein SS1G_03060 [Sclerotinia sclerotiorum 1980]
 gi|154700461|gb|EDO00200.1| hypothetical protein SS1G_03060 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1081

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 17/135 (12%)

Query: 74   AYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
               F + L  ++                 T  +   +I  +  +  +        + G  
Sbjct: 933  FSQFTTMLQLVEWRLRRAGITTVMLDGSMTPAQRQASINHFMTDVNVECFLVSLKAGGVA 992

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL    N +     WW+     Q  +R       + G  R   +  L  +++++  ++ 
Sbjct: 993  LNLTE-ANKVFIVDPWWNPAAEWQSADRC-----HRIGQARPCSITRLCIEDSVESRMVL 1046

Query: 183  RLRTKSTIQDLLLNA 197
                K+ +    +NA
Sbjct: 1047 LQEKKANMIHSTINA 1061


>gi|322823065|gb|EFZ28912.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 737

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 37/223 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
           ++Y    +    D+   + +           ++  +       ++ ++E           
Sbjct: 355 QRYFSLLKTERVDVTLRSADTSQPLVLLTSLMRTCDHPWLSLSDEAYREAMQNPLAGPEA 414

Query: 51  -------VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQG---------- 91
                  ++  KI +   ++ K        +V       L  L  A              
Sbjct: 415 NRNCGDALNSSKISSALALVVKCIGEQRKTLVFSRSKRLLDLLAVALRCWLIDFARLDGD 474

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++   T+Q +N   ++ +        G GL      + ++     W+        + 
Sbjct: 475 VPAEERLKTVQGFNQSERLLVCLLTTQVGGVGLT-VEAASAVIIMDPSWNPSS-----DA 528

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G  R V VY LI   T++E V +    K      
Sbjct: 529 QAIDRVHRIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 571


>gi|289647486|ref|ZP_06478829.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 564

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 33/200 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ L  ++ + +    +I
Sbjct: 376 EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAELDVDDKVI 420

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGH 121
           +   +   +A L++                +  K    I     +    +     ++ G 
Sbjct: 421 LFCEYQESVATLREHCLKMGVGCVTLIGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGT 480

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 481 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRVVVVKIPLAEDTIDQQLW 534

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           Q L  K  +   L++   +E
Sbjct: 535 QMLMDKRALASDLIDPDAEE 554


>gi|320037542|gb|EFW19479.1| DNA repair protein RAD5 [Coccidioides posadasii str. Silveira]
          Length = 1091

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +L     + G GLNL    N +     WW        +E   + R  + G  + 
Sbjct: 983  EQPSPNVLLISLRAGGVGLNLTA-ANHVYMMDPWWSFA-----VEAQAIDRVHRMGQLKD 1036

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V V   + +N+I+E +L+    K  I   L
Sbjct: 1037 VKVTRFVVKNSIEERMLRVQERKMMIAGSL 1066


>gi|294501229|ref|YP_003564929.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294351166|gb|ADE71495.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 557

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 13/196 (6%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +  L      ++    +  +  ++ LQ        ++     +  D+K+     I
Sbjct: 322 VYMTLKNMLERQEDQKSALTEHMITPLMELLQQVPQNAKAEKVLELVQKIDDKV-----I 376

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I     A  +    +          F  G    K     Q +      +  A   + G G
Sbjct: 377 IFTEYRATQLYLQWYLKQHGITSVPFRGGFKRGKKDWMKQLFES-HAQVFIAT-EAGGEG 434

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ+  + ++ + L W+    +Q I R+      + G K  V +Y L  Q+T++E +L+
Sbjct: 435 INLQF-CHHIINYDLPWNPMRLEQRIGRV-----HRLGQKHDVHIYNLAIQHTVEEHILK 488

Query: 183 RLRTKSTIQDLLLNAL 198
            L  K  + + ++  L
Sbjct: 489 LLYEKINLFERVVGEL 504


>gi|189239270|ref|XP_001810058.1| PREDICTED: similar to transcriptional regulator ATRX (X-linked
            helicase II) [Tribolium castaneum]
          Length = 1848

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      + D      + +N     +  L      + G G+NL    N ++ F + W
Sbjct: 1516 LDYFRLDGSSSCDSRSMWCRTFNNPTNTRARLFLISTKAGGLGINLVA-ANRVIIFDVSW 1574

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +        +   + R  + G  +  ++Y  +   T++  + +R  TK  I   +++ 
Sbjct: 1575 NPSH-----DIQSIYRVYRFGQTKPCYIYRFVTLGTMEMKIYERQVTKQAISKRVIDE 1627


>gi|164426466|ref|XP_960853.2| hypothetical protein NCU04229 [Neurospora crassa OR74A]
 gi|157071347|gb|EAA31617.2| hypothetical protein NCU04229 [Neurospora crassa OR74A]
          Length = 1135

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG 91
             ++AN                EK ++   +++          Y+    +  L      G
Sbjct: 525 LQKIANHLTLLIPSSSD---PKEKQRSELNVLQTCAPDTWKELYNNRESMLSLANPEFCG 581

Query: 92  RTLDKDPCTIQEWNEG--------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +        ++ W+E            +      + G GLN+    N +V F   W+   
Sbjct: 582 KWKILR-KLLRFWHESGDKVLVFSHSFVFLISTKAGGVGLNITS-ANKVVIFDPHWNPS- 638

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                +     R  + G  R V V+ L++  TI+E+V  R   K    +
Sbjct: 639 ----YDLQAQDRAYRIGQIRDVDVFRLVSAGTIEEIVYARQIYKQQQAN 683


>gi|20336205|ref|NP_612114.1| transcriptional regulator ATRX isoform 2 [Homo sapiens]
 gi|6960328|gb|AAB49971.2| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|57208648|emb|CAB90351.2| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57210060|emb|CAI42675.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|57284091|emb|CAI43116.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [Homo sapiens]
 gi|119619020|gb|EAW98614.1| alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae), isoform CRA_d [Homo sapiens]
          Length = 2454

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2041 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2099

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2100 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2153


>gi|297286676|ref|XP_002803057.1| PREDICTED: helicase-like transcription factor-like [Macaca mulatta]
          Length = 932

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  + +K      +V   F + L+ ++                    K   +IQ
Sbjct: 759 NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQ 818

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 819 CFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCFDRC-----HRL 872

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+    K  +        K
Sbjct: 873 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKK 912



 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 599 KIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 641


>gi|237801981|ref|ZP_04590442.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024839|gb|EGI04895.1| SNF2-related:helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 651

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 36/203 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 457 QIERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCIKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TID+ + Q L  K  +   L++
Sbjct: 613 DTIDQQLWQMLMDKRALASDLID 635


>gi|312219363|emb|CBX99307.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1120

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 29/200 (14%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA---------API 71
            E  N  ++  +  +         +   +   H +    L  + E                
Sbjct: 912  EYANFLAERDRIRK---DPKLSKKIGSYTGPHTKTQALLNDLKEFHEWSENNPHERPIKS 968

Query: 72   IVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCG 120
            IV   + + L  ++ A                   +D    +   +  + ++     + G
Sbjct: 969  IVFSSWTTHLDLIEIALQAHNHTYVRLDGRMSRDARDKSMQRLREDPSVRVMLVSIGAGG 1028

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GLNL    N +      ++     Q ++R+      + G  R V +   I   + +E +
Sbjct: 1029 LGLNLTT-ANKVFMMEPQFNPAAEAQAVDRV-----HRLGQDRDVTIKRFIMDKSFEEKM 1082

Query: 181  LQRLRTKSTIQDLLLNALKK 200
            L   + K  + DL +   +K
Sbjct: 1083 LVMQKKKKDLADLTMARERK 1102


>gi|154270293|ref|XP_001536002.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410016|gb|EDN05404.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 884

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 704 NEIDIDPETTSSKIQALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARID 763

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 764 GKMSSAKRDAAMNALSNDSNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 817

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           E   V R  + G KR   ++ L+ +N+I++ VL + + K     D +
Sbjct: 818 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLDKQKEKHRKRDDRM 864


>gi|38502928|sp|Q7YQM3|ATRX_PONPY RecName: Full=Transcriptional regulator ATRX; AltName:
            Full=ATP-dependent helicase ATRX; AltName: Full=X-linked
            helicase II; AltName: Full=X-linked nuclear protein;
            Short=XNP
 gi|33354057|dbj|BAC81112.1| ATRX [Pongo pygmaeus]
          Length = 2492

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2079 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2137

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2138 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2191


>gi|320587549|gb|EFX00030.1| DNA excision repair protein [Grosmannia clavigera kw1407]
          Length = 1181

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 67   NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN-EGKIPLLFAH 115
                 +V   F S L+ ++ A  +                    ++++    +  +L   
Sbjct: 1009 PTIKSVVFSQFTSFLSLIEPALRRDNMAFLRLDGTMAQKARAAVLEDFRRSDRFTVLLIS 1068

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + G GLNL      +     WW        +E   + R  + G    V VY  IA+ +
Sbjct: 1069 LRAGGVGLNLT-MAKRVFVMDPWWSFS-----VEAQAIDRVHRMGQDEEVKVYRFIAKGS 1122

Query: 176  IDELVLQRLRTKSTI 190
            ++E +L+    K  +
Sbjct: 1123 VEEKMLKIQDRKKFM 1137



 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 4/49 (8%), Positives = 14/49 (28%), Gaps = 6/49 (12%)

Query: 3   QYH----KFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEE 45
            Y     + +R     ++   +     +  ++ ++  Q     V     
Sbjct: 795 IYEHIFLRVKRSFTATVEAGTVMKSYTSIFAQVLRLRQCCCHPVLVRNM 843


>gi|2306809|gb|AAC51657.1| X-linked nuclear protein [Homo sapiens]
          Length = 2375

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1962 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2020

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2021 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2074


>gi|74183379|dbj|BAE36571.1| unnamed protein product [Mus musculus]
          Length = 916

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 25/201 (12%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI------ 62
           ++   D   E +E         + L++A      +E      V  + + +L++I      
Sbjct: 652 KDFVTDTDAEVLEHSGKMVLLFEILRMA------EEIGDKVLVFSQSLISLDLIEDFLEL 705

Query: 63  ----IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAH 115
                 +    P+I                             +E+N+       L    
Sbjct: 706 ASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIIS 765

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL    N ++ F   W+        +   + R  + G  + V+VY  +AQ T
Sbjct: 766 TKAGSLGINLVA-ANRVIIFDASWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGT 819

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +++ +  R  TK ++   +++
Sbjct: 820 MEDKIYDRQVTKQSLSFRVVD 840


>gi|1778307|gb|AAB49969.1| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|1778353|gb|AAB40700.1| putative DNA dependent ATPase and helicase [Homo sapiens]
 gi|225356534|gb|AAI56297.1| Alpha thalassemia/mental retardation syndrome X-linked (RAD54
            homolog, S. cerevisiae) [synthetic construct]
          Length = 2288

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1875 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 1933

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 1934 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 1987


>gi|71004558|ref|XP_756945.1| hypothetical protein UM00798.1 [Ustilago maydis 521]
 gi|74704333|sp|Q4PGG5|RAD5_USTMA RecName: Full=DNA repair protein RAD5
 gi|46095546|gb|EAK80779.1| hypothetical protein UM00798.1 [Ustilago maydis 521]
          Length = 1387

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 20/171 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQ 90
            +Y              I  L  +     A   ++   F S L          R       
Sbjct: 1199 IYVRNNLRTSTKLSALISHLNTLRATEAAFKGVIFSQFTSFLDLIEPVLTRYRFHFLRLD 1258

Query: 91   GRTLDK-DPCTIQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            G T  K     + E+        + L      + G GLNL    N +     WW+     
Sbjct: 1259 GSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTA-ANKIWLLDFWWN----- 1312

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              IE   + R  + G    V V+  I +++I++ +L   + K  +    LN
Sbjct: 1313 SSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRILLIQKRKDMLIKHALN 1363


>gi|221485219|gb|EEE23509.1| hypothetical protein TGGT1_105260 [Toxoplasma gondii GT1]
          Length = 1244

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHP 116
               +IV  H  + L  +++                  DK    ++E+       +     
Sbjct: 960  GMKVIVFAHHRAVLDYIEEFLQAEMKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLSI 1019

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +CGHGLNL   G  +VF  L+W   +  Q  +R             +V ++YLIA+ T+
Sbjct: 1020 TACGHGLNLTAAGT-VVFAELYWVPGQMIQAEDRSHRI----GTEFSSVQIHYLIAEGTL 1074

Query: 177  DELVLQRLRTKSTIQDLLLNALKKET 202
            DE V + L+ K  +    L+  +++ 
Sbjct: 1075 DETVFRILQRKWRLMTSTLDGEQQQL 1100


>gi|1778351|gb|AAB40698.1| putative DNA dependent ATPase and helicase [Homo sapiens]
          Length = 2375

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1962 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2020

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2021 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2074


>gi|297710407|ref|XP_002831879.1| PREDICTED: transcriptional regulator ATRX-like [Pongo abelii]
          Length = 2454

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 2041 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 2099

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 2100 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2153


>gi|1778352|gb|AAB40699.1| putative DNA dependent ATPase and helicase [Homo sapiens]
          Length = 2337

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1924 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 1982

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 1983 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2036


>gi|330878665|gb|EGH12814.1| SNF2-related:helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 650

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 33/200 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ +  ++ + +    +I
Sbjct: 462 EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAELDVDDKVI 506

Query: 73  VAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLFAHPASCGH 121
           +   +   +A L++   +            +  K    I     +    +     ++ G 
Sbjct: 507 LFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGT 566

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 567 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAEDTIDQQLW 620

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           Q L  K  +   L++   +E
Sbjct: 621 QMLMDKRALASDLIDPEAEE 640


>gi|290970736|ref|XP_002668235.1| predicted protein [Naegleria gruberi]
 gi|284081521|gb|EFC35491.1| predicted protein [Naegleria gruberi]
          Length = 273

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             F      D+    I + N+    I +L     +   G+NL  G N +    + W+   
Sbjct: 1   MRFDGSTPFDQRQSCIDKINDNTNNITVLLISTLAGCEGINL-MGANRVALIDVNWNPSH 59

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + + R+      + G  + V++Y  I +NT+++LVL+R   K  + + +++
Sbjct: 60  DSEAVCRV-----FRIGQLKPVYIYRFICENTMEDLVLKRQLQKENLSNWIVD 107


>gi|308160977|gb|EFO63440.1| Transcriptional regulator ATRX, putative [Giardia lamblia P15]
          Length = 1367

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K      +I     N    ++   +      L+                     +   
Sbjct: 656 SSKYSLFMELITHIKNNNHRALIFCDYKLIFNILEHLLSYNDIPYLRLDGTITDVSERDK 715

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +N   K   L         GLNL  G N ++ F+  W L+     IE   + R  +
Sbjct: 716 ICKSFNANKKYTALLISIKLGSMGLNLT-GANRVILFAPAWSLQ-----IEEQAIARAYR 769

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            G KR V VY L   NT++E ++ R   K+ I ++ L+  K  ++
Sbjct: 770 MGQKRNVVVYKLACINTLEEKMVVRQLQKAGIANVTLDDEKHRSV 814


>gi|120611354|ref|YP_971032.1| helicase domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120589818|gb|ABM33258.1| helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 709

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 18/162 (11%)

Query: 51  VHDEKIKALEVIIEKA-NAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPC 99
           +   K+  L   ++   +   II+   + S           L     +     +  K   
Sbjct: 527 LESLKVPFLLDTVQSMGDDDKIIIFCEYMSTVDALKQALAGLGIGCVSLVGADSAKKRQA 586

Query: 100 TIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  + +     +     ++ G G+ L    N++ F S+ W          R    R  +
Sbjct: 587 AVDAFQQVPTNKVFIGTTSAAGVGITLTA-ANLVAFASMPWTPALM-----RQAEDRAYR 640

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G  R V V   I   TIDE VL+    K T +  ++ A K 
Sbjct: 641 LGQLRDVLVIVPIVPGTIDEGVLKLQDAKRTTEVEVVEAAKA 682


>gi|296189487|ref|XP_002742800.1| PREDICTED: hypothetical protein LOC100415645 [Callithrix jacchus]
          Length = 1546

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 508 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 552

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 553 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-IGANVVVLFDPTWNPAN--- 608

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 609 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 661


>gi|308271724|emb|CBX28332.1| hypothetical protein N47_G36560 [uncultured Desulfobacterium sp.]
          Length = 645

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F S        F            I+ + E     +       G G NLQ+   ++  
Sbjct: 465 SEFLSWNDIPHALFHGSMDNSAKDEQIRIFQEE--RDILVTTEIGGEGRNLQFCCQMVN- 521

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + L W+  + +Q I RI      + G  + V +Y L    +I++ +L+ L  K  + +++
Sbjct: 522 YDLPWNPMKIEQRIGRI-----HRIGQDKQVMIYNLCNAGSIEDHILEILDRKINMFEMV 576

Query: 195 LNAL 198
           +  +
Sbjct: 577 IGEV 580


>gi|148702943|gb|EDL34890.1| mCG123397, isoform CRA_a [Mus musculus]
          Length = 184

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++                    K   +IQ
Sbjct: 11  NALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 70

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 71  RFQNTEAGSPTIMLLSLKAGGVGLNLCA-ASRVFLMDPAWNPAAEDQCFDRC-----HRL 124

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           G K+ V +   I +++++E +L+   TK  +        K +
Sbjct: 125 GQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKTD 166


>gi|71653576|ref|XP_815423.1| DNA excision/repair protein SNF2 [Trypanosoma cruzi strain CL
           Brener]
 gi|70880477|gb|EAN93572.1| DNA excision/repair protein SNF2, putative [Trypanosoma cruzi]
          Length = 773

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 37/223 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----------- 50
           +QY    +    D+   + +           ++  +       ++ ++E           
Sbjct: 391 QQYFSLLKTERVDVTLRSADTSQPLVLLTSLMRTCDHPWLSLSDEAYREAMQNPLAIPEA 450

Query: 51  -------VHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQG---------- 91
                  ++  KI     ++ K        +V       L  L  A              
Sbjct: 451 NRNFGDALNSSKISLAIALVVKCIGEQRKTLVFSRSKRLLDLLAVALRCWWIDFARLDGD 510

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              ++   T+Q +N   ++ +        G GL      + ++     W+        + 
Sbjct: 511 VPAEERLKTVQGFNQSERLLVCLLTTQVGGVGLT-VEAASAVIIMDPSWNPSS-----DA 564

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G  R V VY LI   T++E V +    K      
Sbjct: 565 QAIDRVHRIGQTRDVVVYRLITCGTVEEKVYRNQVFKVMAAKQ 607


>gi|258567128|ref|XP_002584308.1| hypothetical protein UREG_04997 [Uncinocarpus reesii 1704]
 gi|237905754|gb|EEP80155.1| hypothetical protein UREG_04997 [Uncinocarpus reesii 1704]
          Length = 1183

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    N +     WW        +E   + R  + G  + V V  
Sbjct: 1080 NILLISLRAGGVGLNLTA-ANHVYMMDPWWSFA-----VEAQAIDRVHRMGQLKDVKVTR 1133

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLL 194
             + +N+I+E +L+    K  I   L
Sbjct: 1134 FVVKNSIEERMLRVQERKMMIAGSL 1158


>gi|58219008|ref|NP_001010895.1| RAD26L hypothetical protein [Homo sapiens]
 gi|74756405|sp|Q5T890|RAD26_HUMAN RecName: Full=Putative DNA repair and recombination protein
           RAD26-like
 gi|55957855|emb|CAI16517.1| chromosome 9 open reading frame 102 [Homo sapiens]
 gi|187954497|gb|AAI40703.1| Chromosome 9 open reading frame 102 [Homo sapiens]
          Length = 712

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 520 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 564

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 565 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN--- 620

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 621 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 673


>gi|296418213|ref|XP_002838736.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634697|emb|CAZ82927.1| unnamed protein product [Tuber melanosporum]
          Length = 1100

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
              Y  +       H  ++   +++I       +        D             +    
Sbjct: 907  HSYKMQLLKSIVEHSIRLG-DKILIFSHGVYTLNYLDKLLEDWKIDFLRLDGKTRMSTRQ 965

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               + +N G+  +      + G GLNL  G N ++ F   W       M E   V R  +
Sbjct: 966  SATKSFNSGRSDVFLVSTEAGGLGLNL-PGANRIIIFDFKWSP-----MWEEQAVGRAYR 1019

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             G K+ VFVY   A  T ++L   ++  KS +Q  +++  K++ + 
Sbjct: 1020 MGQKKHVFVYRFHAVGTFEDLKRNKILFKSQLQSRVVD--KQDPLR 1063


>gi|297304199|ref|XP_001099671.2| PREDICTED: transcriptional regulator ATRX isoform 2 [Macaca mulatta]
          Length = 2338

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1925 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 1983

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 1984 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 2037


>gi|194224690|ref|XP_001916162.1| PREDICTED: similar to RAD26L hypothetical protein [Equus caballus]
          Length = 1481

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
             +  K+K L+ ++     N   +++       L  LQ+         +           
Sbjct: 447 PKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGNTKSEDR 506

Query: 98  PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++E+N  + + +      + G GLN   G N++V F   W+        +   + R 
Sbjct: 507 IKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN-----DLQAIDRA 560

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 561 YRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 605


>gi|168041184|ref|XP_001773072.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
 gi|162675619|gb|EDQ62112.1| SWI/SNF class chromatin remodeling complex protein [Physcomitrella
            patens subsp. patens]
          Length = 2529

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 59/225 (26%)

Query: 28   KTVKCLQLANGAVY-----YDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            K ++  ++ N         Y  +         K+  L+ I+ K +     +++       
Sbjct: 1499 KCMELRKVCNHPYLNYPPRYHSQGDMIVRTCGKLWILDRILVKLHKTGHRVLLFSTMTRL 1558

Query: 81   LARLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYG 128
            L  L+      R + +              I E+N       +      + G GLNLQ  
Sbjct: 1559 LDILEDYLQWRRLVYRRIDGMTTLEARESAIVEFNRPNSDCFIFLLSIRAAGRGLNLQT- 1617

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNT----------- 175
             + ++ +    + +      E   V R  + G KR V V Y+  + +NT           
Sbjct: 1618 ADTVIVYDPDPNPKN-----EEQAVARAHRIGQKREVRVLYMEAVVENTPSYEKEDELRS 1672

Query: 176  ---IDELVLQR------------------LRTKSTIQDLLLNALK 199
               +D+   +                    + K  + D ++NA +
Sbjct: 1673 GGSLDQKDDEMAGKDRYVGSVESLVRNNIQQHKIDMADEVINAGR 1717


>gi|3420753|gb|AAC31920.1| helicase domain-containing protein [Dictyostelium discoideum]
          Length = 344

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +++       N+    +      + G GL L      ++F  L W              
Sbjct: 11  QNRNDYVNDFQNDPNCRVAVLSITAAGTGLTLTA-ATCVIFAELSWTPGVLF-----QAE 64

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R  + G   +V V YLIA  T+DE++   + +K T+   +L+    ++++
Sbjct: 65  DRAHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLDDEDGQSLN 115


>gi|313238286|emb|CBY13372.1| unnamed protein product [Oikopleura dioica]
          Length = 1487

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                       T  K    I+ +N+    +  L      + G G NL  G N ++ F   
Sbjct: 1140 NIDYFRIDGSVTAAKRTTFIESFNDLEDPRARLFLVSTKAGGIGTNL-VGANRVIIFDSS 1198

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+        +   + R  + G  ++VFVY  +   T++E + +R   KS++   +++ 
Sbjct: 1199 WNPAH-----DVQSLFRVYRFGQTKSVFVYRFVGHGTMEEKIYERQVNKSSLGLRVVDE 1252


>gi|281208788|gb|EFA82963.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 428

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           S              ++     I  ++ +  IP++     + G G+NL    N+++F+ +
Sbjct: 288 SMQDISFCRLDGTTPVNDRQDIIDLFSGDKTIPVMLLSTLAGGLGINLT-CANVVIFYDI 346

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ +     +ER    R  + G ++ V+++ +I  +++D  +L+   TK  + D +L  
Sbjct: 347 SFNPQ-----VERQAEDRAHRLGQEKTVYIHRIIVDDSVDNNILEMSTTKRELNDSMLEE 401


>gi|269795481|ref|YP_003314936.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097666|gb|ACZ22102.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 690

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 22/205 (10%)

Query: 5   HKFQRELYCDLQGENIEAF--NSASKTVKCLQLANGAVYYDE----EKHWKEVHDEKIKA 58
              +R    +L+    +A   N  +   +  Q   G              K V   K   
Sbjct: 477 ELVRRVAAAELKDSTSKAGGENVFTMVRRIGQAKAGPAADYAAQLARSVGKVVFFAKHVD 536

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
           +    E+  A   I       D               ++        + ++ ++     +
Sbjct: 537 VMDQAEQLFADRGIRYASIRGDQT----------PKVREKNITAFVEDPEVQVVVCSLTA 586

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNLQ   N+++    W   E+         + R  + G    V  + +IA  T+D 
Sbjct: 587 AGVGLNLQVASNLVLAELSWTYAEQT------QAIDRIHRIGQAEPVTAWRIIAAQTVDS 640

Query: 179 LVLQRLRTKSTIQDLLLNALKKETI 203
            + + + +KS +    L+   ++ +
Sbjct: 641 RIAELIDSKSGLAARALDGADEDDL 665


>gi|123407009|ref|XP_001302911.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121884245|gb|EAX89981.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 2169

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 36/212 (16%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------------DEKIKALEVI 62
            G  I++     ++    ++ N     +  + +                   K   L+ +
Sbjct: 504 NGGEIDS---LQESNTFQRICNHPFLIEGVEDYFMARNPGVSKLDMLVNTSAKFIFLDRV 560

Query: 63  I--EKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGK 108
           +   K     +++             +        +      +  +    I ++  N G 
Sbjct: 561 LPCFKKQGRSVLIFSQKVKVLKLLEEYCQLKRYTYEILNGNLSEQEKKEAISKFCDNSGD 620

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      S   GLNL    N+ + F   W+ +      +   + R  + G  + V V 
Sbjct: 621 AFIFLISTRSGAEGLNLTR-ANVTIVFDPDWNPQN-----DIQALGRCHRIGQTQKVDVI 674

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            L+   T +  +  R + K  + + +L   K+
Sbjct: 675 RLLTFGTYEHEMYIRSQRKLKLWNSILGDGKQ 706


>gi|255953435|ref|XP_002567470.1| Pc21g04240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589181|emb|CAP95321.1| Pc21g04240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1220

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    + +     WW        IE   + R  + G  R V 
Sbjct: 1113 PAPTVLLISLRAGGVGLNLTS-ASNVFIMDPWWSFA-----IEAQAIDRVHRMGQTRDVN 1166

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V   + +++I+  +L+    K  I   L
Sbjct: 1167 VTRFVVKDSIEGRMLRVQERKMNIAGSL 1194


>gi|78045450|ref|YP_361700.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78033954|emb|CAJ19953.1| DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 675

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 11/177 (6%)

Query: 22  AFNSASKTVKCLQ-LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
           +  + +K  +  Q L      +  E        +K      I+ +       +A  F   
Sbjct: 471 SLTALAKIGRLRQYLERQKADWLIETIAGFEPSDKAL----IMCEFQDTVEYLAEEFAKA 526

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +     +     K     +  +E  +        + G G  L    NI+ F SL W 
Sbjct: 527 GIEVVTFLGKHSKARKQQAIDRFQSEPTVRCFIGTTKAAGVGHTLTA-ANIVCFASLPWT 585

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                    +    R  + G KR V V   +   TIDE  +  ++ K+ I++ LL  
Sbjct: 586 NALK-----KQAEDRAWRYGQKRVVTVLVPLFAGTIDEQAMALIQHKAAIENDLLED 637


>gi|606833|gb|AAC50069.1| helicase II [Homo sapiens]
          Length = 1641

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 1221 RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 1279

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 1280 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 1333


>gi|218289657|ref|ZP_03493877.1| SNF2-related protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240307|gb|EED07490.1| SNF2-related protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 572

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 7/140 (5%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            E +I             +      +     +G         ++E    KI +L A   S
Sbjct: 389 PEKVIIFTEYRASQDFLMYTLKKHGISAVPFRGGFRRGKKDWMRELFSKKIRVLVAT-ES 447

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G+NLQ+  + ++ + L W+    +Q I RI      + G   +  + +L+ ++TI+E
Sbjct: 448 GGEGINLQF-CHHMINYDLPWNPMRLEQRIGRI-----HRLGQTHSCHIVHLVTKDTIEE 501

Query: 179 LVLQRLRTKSTIQDLLLNAL 198
            +++ L+ K  + + ++  L
Sbjct: 502 HIMEILQEKVRMFEAVIGRL 521


>gi|301615850|ref|XP_002937382.1| PREDICTED: helicase-like transcription factor [Xenopus (Silurana)
           tropicalis]
          Length = 956

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
                 +  + AL     K      IV   F S L+           +        T  K
Sbjct: 777 MCSTKINALMHALVDQRRKDATVKSIVVSQFTSFLSVIEVALRESGFMFTRLDGSMTQKK 836

Query: 97  DPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               IQ +         ++     + G GLNL    + +      W+    +Q  +R   
Sbjct: 837 RTEAIQSFQRPDAQSPTIMLLSLKAGGVGLNLTA-ASRVFLMDPAWNPAAEEQCFDRC-- 893

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               + G  + V V   + +N+++E +L+    K  +      
Sbjct: 894 ---HRLGQTKKVIVTKFVVRNSVEENMLKIQSKKRELAAGAFG 933



 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 6/47 (12%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANGAVYY 42
           + Y   + E        +    I +   +  +  V+  QL       
Sbjct: 623 QIYESLKNEGKAVISRYVSEGTILSHYADVLAVLVRLRQLCCHPFLV 669


>gi|237842313|ref|XP_002370454.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|211968118|gb|EEB03314.1| SNF2 family N-terminal domain-containing protein [Toxoplasma gondii
            ME49]
 gi|221502587|gb|EEE28307.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1231

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-EGKIPLLFAHP 116
               +IV  H  + L  +++                  DK    ++E+       +     
Sbjct: 947  GMKVIVFAHHRAVLDYIEEFLQAEAKRTIRIDGRTPQDKREQLVKEFQTSPSCQVALLSI 1006

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             +CGHGLNL   G  +VF  L+W   +  Q  +R             +V ++YLIA+ T+
Sbjct: 1007 TACGHGLNLTAAGT-VVFAELYWVPGQMIQAEDRSHRI----GTEFSSVQIHYLIAEGTL 1061

Query: 177  DELVLQRLRTKSTIQDLLLNALKKET 202
            DE V + L+ K  +    L+  +++ 
Sbjct: 1062 DETVFRILQRKWRLMTSTLDGEQQQL 1087


>gi|68637851|emb|CAI36056.1| superfamily II DNA/RNA helicase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 652

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 457 QVERD---EYNRIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALASDLIDRDAEE 640


>gi|307176622|gb|EFN66090.1| Transcriptional regulator ATRX [Camponotus floridanus]
          Length = 2405

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            L           + +      + +N+    +  L      + G G+NL    N ++ F  
Sbjct: 2005 LGLDYFRLDGQTSAENRNIWCKIFNKPTNTRARLFLISTRAGGLGINLTA-ANRVIIFDA 2063

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q I RI      + G K+  ++Y  +A  T++E +  R  TK ++   +++ 
Sbjct: 2064 SWNPSHDVQSIFRI-----YRFGQKKPCYIYRFLAAGTMEEKIYNRQVTKLSLSCRVVDE 2118


>gi|149186589|ref|ZP_01864901.1| putative helicase (Snf2 family) protein [Erythrobacter sp. SD-21]
 gi|148829816|gb|EDL48255.1| putative helicase (Snf2 family) protein [Erythrobacter sp. SD-21]
          Length = 992

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 14/174 (8%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------LQ 85
           + + +      +         ++ L  I +      +I+   F   +            +
Sbjct: 443 ICDNSRVLASLEASDTKFQRLVEWLRKIRQDHPDEKVIIFSSFRKTIDYLARRLEDAGFE 502

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                G         +  + +     +       G GL+LQ+   IL  + L W+    +
Sbjct: 503 SIELHGGIDLDRQTIVNSFADAPAGTVLLTSEVGGEGLDLQF-CRILFNWDLPWNPMRVE 561

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           Q I RI    Q       ++ +  LIA+ TI+E V +RL  +  I    L   +
Sbjct: 562 QRIGRIDRIGQ----QSPSIDIINLIAEKTIEERVYERLYERLGIIRSTLGDFE 611


>gi|115690971|ref|XP_001203541.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115733996|ref|XP_001199700.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 221

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 43  DEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQ----------KAF 88
           +E+   +     K+ AL   +            IV   F S L  L+             
Sbjct: 29  NEDTEREWHSSAKVDALMECLLTERAADKTTKSIVVSQFTSFLDLLKKPLTEKGFKFCRL 88

Query: 89  PQGRTLDKDPCTIQEW--NEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +       I+E+  N+   P +      + G GLNL    + L      W+    +
Sbjct: 89  DGSMSRIARTAAIREFSSNDPDSPQIFLLSLKAGGVGLNLTA-ASRLYLLDPAWNPACEE 147

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           Q  +R       + G  + V +   + +++++E +L+   TK  +   +     +
Sbjct: 148 QCFDRC-----HRLGQTKDVTITKFLVRDSVEEAMLELQETKRQLMKNVFGGKNQ 197


>gi|310792112|gb|EFQ27639.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1103

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLL 112
                    +V   + S L  +Q A                 + +        ++  + ++
Sbjct: 942  PHEPPYKSVVFSTWTSHLDLIQMALDNVGIKYVRLDGSMTRVARTQAMDSFRDDNSVHVI 1001

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 + G GLNL  G + +      ++     Q I+R+      + G KR V     I 
Sbjct: 1002 LVSITAGGLGLNLTAGSS-VYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVRTVRYIM 1055

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN 196
            +N+ +E +L+    K+ +  L ++
Sbjct: 1056 RNSFEEKMLELQEKKNKLASLSMD 1079


>gi|240169371|ref|ZP_04748030.1| SNF2 family helicase [Mycobacterium kansasii ATCC 12478]
          Length = 2150

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           F    +  +   TI  +  G+ P++     +   G NLQ+  N ++ + L W+    +Q 
Sbjct: 541 FHGSMSASERAATIAAFRSGEAPVMI-STDAGAEGQNLQF-CNCVLNYDLPWNPMRIEQR 598

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           I R+    Q +      VFV  L A  TIDE V + L  K  + +LL   +
Sbjct: 599 IGRVDRLTQPRD----EVFVANLYACRTIDESVYRLLAEKLRMFELLFGQV 645


>gi|295670543|ref|XP_002795819.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb01]
 gi|226284904|gb|EEH40470.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb01]
          Length = 1187

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N +     WW      Q I+R+      + G  R V
Sbjct: 1079 ESPPNVLLISLRAGGVGLNLTT-ANHVFMMDPWWSFATEAQAIDRV-----HRMGQLRDV 1132

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1133 TVTRFIVKDSIEGRILKIQERKMMIAGSL 1161


>gi|296419114|ref|XP_002839164.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635170|emb|CAZ83355.1| unnamed protein product [Tuber melanosporum]
          Length = 759

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 31/170 (18%)

Query: 53  DEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             KI+ L  ++ K        IV   F S L  ++    +              D    +
Sbjct: 503 STKIRYLLAVLRKELKLKNKTIVFSQFTSMLDLIEPFLHRNGIAFTRYDGSMKNDDREAS 562

Query: 101 IQEWNEGK-------------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           ++                     +L         GLNL      +V    +W+       
Sbjct: 563 LRRLRGEGEYAPSPGKEDRSWCGVLLCSLKCGALGLNLTAAC-RVVILEPFWNP-----F 616

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E   + R  + G +  V VY +    +++E +LQ    K  +       
Sbjct: 617 VEEQAIDRVHRIGQETDVVVYKITVAGSVEERILQLQDQKRELAKAAFGD 666


>gi|289628760|ref|ZP_06461714.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 602

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 64/200 (32%), Gaps = 33/200 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ L  ++ + +    +I
Sbjct: 414 EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAELDVDDKVI 458

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGH 121
           +   +   +A L++                +  K    I     +    +     ++ G 
Sbjct: 459 LFCEYQESVATLREHCLKMGVGCVTLIGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGT 518

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 519 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRVVVVKIPLAEDTIDQQLW 572

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           Q L  K  +   L++   +E
Sbjct: 573 QMLMDKRALASDLIDPDAEE 592


>gi|241950577|ref|XP_002418011.1| DNA repair protein, putative [Candida dubliniensis CD36]
 gi|223641350|emb|CAX43310.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 1088

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 57/185 (30%), Gaps = 25/185 (13%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            +    L   N  +    +              + +  + K +   +  +   II      
Sbjct: 900  DFQLYLYDPNRSSSKIQALIRHLK------ALHSQSPNSKVIVFSQFSSYLDIIHSELKL 953

Query: 70   PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNL 125
                   F  D             ++     ++ +N     GKI +L     +CG GLNL
Sbjct: 954  ASEDFIVFKFDGRL---------NMNDRTKLLESFNQPLDNGKIAILLLSLKACGVGLNL 1004

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                +       WW      Q I+RI      + G    V V   I +N+I+  +L+   
Sbjct: 1005 TT-ASRAYMMDPWWSPSIEDQAIDRI-----HRIGQNETVKVVRFIMENSIETKMLKIQE 1058

Query: 186  TKSTI 190
             K  I
Sbjct: 1059 RKKQI 1063



 Score = 35.1 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANG 38
           K Y  F+   Y                    +  ++  Q+   
Sbjct: 718 KLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCH 760


>gi|145539209|ref|XP_001455299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423098|emb|CAK87902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1741

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    + ++N +  I +L       G GLNL    NI++ F   ++      + +
Sbjct: 1577 SVPQNQRYPLVTKFNEDPDIRVLLLTTQVGGLGLNL-SSANIVIMFDHDYNP-----VND 1630

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +  + R  + G K  V V+ LI ++T++E ++   R KS I   ++N    
Sbjct: 1631 QQAMDRAHRIGQKNVVQVFRLIVKDTLEEKIMGIQRFKSAISKAIVNQDNA 1681


>gi|94266483|ref|ZP_01290174.1| Helicase-like [delta proteobacterium MLMS-1]
 gi|93452898|gb|EAT03409.1| Helicase-like [delta proteobacterium MLMS-1]
          Length = 137

 Score = 72.9 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++    WW+       +E     R  + G +R V +Y L+ + +I+E +L    
Sbjct: 49  LTAADYVIHLDPWWNPA-----VEDQASDRAHRIGQERPVTIYRLVTKGSIEEKILALHG 103

Query: 186 TKSTIQDLLL 195
            K  + + LL
Sbjct: 104 HKRDLAENLL 113


>gi|8777308|dbj|BAA96898.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1053

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 36/223 (16%)

Query: 8   QRELYCDLQGENIEAF----NSASKTVKCLQLANGAVYYDEE--KHWKEVHDEKIKALE- 60
           QR+LY       I       +  +      ++ +  +   +   +   E  D  +   E 
Sbjct: 632 QRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEA 691

Query: 61  ----------------VIIEKANAAPIIVAYHFNSDLA------RLQKAFPQGRTLDKDP 98
                              +  N +         S L                       
Sbjct: 692 GVAERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLDSLTSNGYSFLRIDGTTKAPDRL 751

Query: 99  CTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++E+ EG + P+        G GL L    + ++     W+     Q ++R       
Sbjct: 752 KTVEEFQEGHVAPIFLLTSQVGGLGLTLTK-ADRVIVVDPAWNPSTDNQSVDR-----AY 805

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G  + V VY L+   T++E + ++   K  +        ++
Sbjct: 806 RIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQ 848


>gi|330804465|ref|XP_003290215.1| hypothetical protein DICPUDRAFT_98608 [Dictyostelium purpureum]
 gi|325079679|gb|EGC33268.1| hypothetical protein DICPUDRAFT_98608 [Dictyostelium purpureum]
          Length = 1514

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPC 99
            DEE     + + K +   ++  +      ++   F  +   L      +     L K   
Sbjct: 1224 DEELSKLPLPEGKNQFKCLVFSQWTRFLDLIEECFKHNGWNLDEHYCRYDGKVPLKKRES 1283

Query: 100  TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+E+    G   ++       G GLNL    N++     +W+       +E   + R  
Sbjct: 1284 IIKEFSRESGGPRVMLISLKCGGVGLNLHR-ANMVYMCDPYWNSA-----VEEQAIGRVD 1337

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +    R + +   + ++TI+E ++    TK    +++L+ 
Sbjct: 1338 RLNQTRDLKIKRFVMRDTIEERIMALQDTKKINSNIILSD 1377


>gi|327300655|ref|XP_003235020.1| hypothetical protein TERG_04072 [Trichophyton rubrum CBS 118892]
 gi|326462372|gb|EGD87825.1| hypothetical protein TERG_04072 [Trichophyton rubrum CBS 118892]
          Length = 1877

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 68/193 (35%), Gaps = 10/193 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKT-VKCLQL--ANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +   +++G+        S+   K   +   +        +   ++ DE IKA + I+ 
Sbjct: 1275 VEDDVLEIEGQTAITDEVVSQFEQKFKDIKDLDSPKNSHRTQMVGQIVDESIKAGDKILI 1334

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             +     +       D    +     G+T         +++ +    +      +   GL
Sbjct: 1335 FSGYLHTLSYLGSMLDARGHKYCRLDGKTPIATRQAATRDFRDSDAHVYLISTKAGALGL 1394

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N+  G N ++ F   ++        E   + R  + G  + VFVY  +   T +EL+ ++
Sbjct: 1395 NI-IGANRVIIFESEYNPT-----WEEQAIGRAYRLGQTKDVFVYRFVMGGTFEELIHEK 1448

Query: 184  LRTKSTIQDLLLN 196
               K  +    ++
Sbjct: 1449 GIFKKNMALRAID 1461


>gi|325274896|ref|ZP_08140906.1| DNA helicase [Pseudomonas sp. TJI-51]
 gi|324099980|gb|EGB97816.1| DNA helicase [Pseudomonas sp. TJI-51]
          Length = 659

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 36/207 (17%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK-A 66
           + +    +      A     K  K  QL               +   K   L   I    
Sbjct: 462 RDQYLAAVSDNTQTAI---VKIGKIRQL---------------LERLKASWLIDTITSLG 503

Query: 67  NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAH 115
           +    I+   +   +A               F    +  +    I  +  +  + +    
Sbjct: 504 DDDKSIIFCEYTESVAYLADEFAKAGIQTVTFTGSNSGTRKQKAIDTFMSDPAVKVFIGT 563

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLNL    N + F SL W          R    R  + G KRAV V   +   T
Sbjct: 564 TKAAGVGLNLVA-ANYVFFASLPWTAAAK-----RQAEDRAYRNGQKRAVTVLMPVISGT 617

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKET 202
           IDE V+  L+ K +I+  LL+   ++ 
Sbjct: 618 IDEQVVLLLQHKESIEQDLLDDSVQDP 644


>gi|145503894|ref|XP_001437919.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405080|emb|CAK70522.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1741

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +    + ++N +  I +L       G GLNL    NI++ F 
Sbjct: 1564 TQFPGLQYLILDGSVPQTQRYPLVTKFNEDPDIRVLLLTTQVGGLGLNL-SSANIVIMFD 1622

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++      + ++  + R  + G K  V V+ LI ++T++E ++   R KS I   ++N
Sbjct: 1623 HDYNP-----VNDQQAMDRAHRIGQKNVVQVFRLIVKDTLEEKIMGIQRFKSAISKAIVN 1677

Query: 197  ALKK 200
                
Sbjct: 1678 QDNA 1681


>gi|63054489|ref|NP_593038.2| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces pombe 972h-]
 gi|38258935|sp|Q09772|RDH54_SCHPO RecName: Full=Meiotic recombination protein rdh54; AltName:
           Full=ATP-dependent helicase rdh54; AltName:
           Full=Meiotically up-regulated gene 34 protein; AltName:
           Full=RAD54 protein homolog 2
 gi|30519798|emb|CAA91068.3| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces pombe]
 gi|31323296|gb|AAP44116.1| meiotic recombination factor Rdh54 [Schizosaccharomyces pombe]
          Length = 811

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 37/207 (17%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHW----------------KEVHDEKIKALEVIIEKANA- 68
                +  ++ N  +    EK                    +   K++ L  +++     
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRG 547

Query: 69  -APIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIP---LLFA 114
               ++   +   L  ++                    +    +  +N        +L  
Sbjct: 548 CQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLL 607

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL  G   L+ +   W+  +     +   ++R  ++G KR V +Y  ++  
Sbjct: 608 SSKAGGCGLNLT-GSTRLIIYEPSWNPAQ-----DLQALSRIYRSGQKRPVCIYTFLSSG 661

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
            +DE +  R  TK  +    +++   +
Sbjct: 662 MLDERIFIRQNTKQGLSSSFIDSDASQ 688


>gi|94265886|ref|ZP_01289615.1| Helicase-like [delta proteobacterium MLMS-1]
 gi|93453581|gb|EAT03980.1| Helicase-like [delta proteobacterium MLMS-1]
          Length = 137

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++    WW+       +E     R  + G +R V +Y L+ + +I+E +L    
Sbjct: 49  LTAADYVIHLDPWWNPA-----VEDQASDRAHRIGQERPVTIYRLVTKGSIEEKILALHG 103

Query: 186 TKSTIQDLLL 195
            K  + + LL
Sbjct: 104 HKRDLAENLL 113


>gi|329929408|ref|ZP_08283156.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
 gi|328936495|gb|EGG32940.1| SNF2 family N-terminal domain protein [Paenibacillus sp. HGF5]
          Length = 610

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           + K +    +I++ N   +IV   +            D   +   +  G    K    + 
Sbjct: 401 NTKAEKAIELIQQMN-EKVIVFTEYRATQEYLLNYFRDHGLISVPYRGGMNRGKKDWMMD 459

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  GK  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 460 LFR-GKAQVMIAT-EAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 511

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V +Y L    TI+E +L  L  K  + ++++  L
Sbjct: 512 NDVKIYNLSTSGTIEEHILNLLHEKINMFEMVIGGL 547


>gi|296412641|ref|XP_002836031.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629831|emb|CAZ80188.1| unnamed protein product [Tuber melanosporum]
          Length = 876

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 71/201 (35%), Gaps = 24/201 (11%)

Query: 11  LYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
              D++ + N ++     +  K      G     +      + ++K          ++  
Sbjct: 669 ALLDIKSDYNEDSVQDLQRRKKLKGRYGGPSTKVKALISSLLENKKASTT------SSPI 722

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
             +V   + S +  ++ AF              T  +    ++++    +I ++     +
Sbjct: 723 KSVVFSCWTSHMDLIEIAFKDNGINFVRLDGSMTRTQRNRVMEDFERAPEISVILISIMA 782

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL             ++     Q I+RI      + G  R V     I +++ + 
Sbjct: 783 GGLGLNLTAAC-KAYVMEPQFNPAAESQAIDRI-----HRLGQTRPVTTTRYIMRDSFEM 836

Query: 179 LVLQRLRTKSTIQDLLLNALK 199
            +++  + K+ + +L +++ +
Sbjct: 837 KIVELQKKKTELANLSMSSGR 857


>gi|116207162|ref|XP_001229390.1| hypothetical protein CHGG_02874 [Chaetomium globosum CBS 148.51]
 gi|88183471|gb|EAQ90939.1| hypothetical protein CHGG_02874 [Chaetomium globosum CBS 148.51]
          Length = 1558

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 19/157 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPC 99
              KI  L  I+++       ++V              F       Q+     +   +   
Sbjct: 1061 SNKIVVLLRILDECKKAKDKVLVFSQSIPTLDYIENIFKRKRVVYQRLDGSTKMSTRQAS 1120

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +   + +  +      S G GLN+  G N +V F   +   + Q       + R  + 
Sbjct: 1121 VKKFNTDAESQVYLVSTRSGGVGLNIH-GANRVVIFDFKYSPTDEQ-----QAIGRAYRL 1174

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + V+VY+L    T ++ +      K+ +   +++
Sbjct: 1175 GQTKPVYVYWLTVGGTFEDTIHNNAIFKAQLAKRVVD 1211


>gi|322787016|gb|EFZ13240.1| hypothetical protein SINV_08607 [Solenopsis invicta]
          Length = 1002

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PL 111
           +K     +I+ +      ++A H +S        F     +      I+ +N       +
Sbjct: 844 QKGNDKLIIVSQWAMLLEVIASHLSSIKGATYSKFTGSVAIKDRQNVIESFNRPNSGPRI 903

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L       G       GGN L+ F + W+ +   Q  +RI      + G K+ V+VY  +
Sbjct: 904 LLLSLT-AGGVGLNLVGGNYLLLFDIHWNPQLESQAQDRI-----YRFGQKKNVYVYKFV 957

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             NTI+E +      K  I   +L   K 
Sbjct: 958 CVNTIEERIKALQERKLEIAKNVLTGDKA 986


>gi|326468582|gb|EGD92591.1| hypothetical protein TESG_00164 [Trichophyton tonsurans CBS 112818]
          Length = 1811

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPC 99
            +  + + +  II++       I++   +   L+                     +     
Sbjct: 1283 NSHRTQMVGQIIDESIKAGDKILIFSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQA 1342

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +  + +      +   GLN+  G N ++ F   ++        E   + R  + 
Sbjct: 1343 ATRDFRDSDVHVYLISTKAGALGLNI-IGANRVIIFESEYNPT-----WEEQAIGRAYRL 1396

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  I   T +EL+ ++   K  +    ++
Sbjct: 1397 GQTKDVFVYRFIMGGTFEELIHEKGVFKKNMALRAID 1433


>gi|530788|gb|AAA20872.1| X-linked nuclear protein [Homo sapiens]
 gi|1588601|prf||2209217A ATR-X gene
          Length = 1298

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                        T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 940  RNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 998

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 999  SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 1052


>gi|71980419|ref|NP_001020958.1| human XNP gene related family member (xnp-1) [Caenorhabditis elegans]
 gi|3253105|gb|AAC24256.1| Human xnp gene related protein 1, confirmed by transcript evidence
            [Caenorhabditis elegans]
          Length = 1359

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        K       +N+    +  L+     +   G N+    N ++ F   W+
Sbjct: 1015 DYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVA-ANRVIIFDACWN 1073

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                    +   + R  + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 1074 PSH-----DTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1125


>gi|328869586|gb|EGG17963.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1429

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 26/167 (15%)

Query: 50   EVHDEKIKALEVIIEKAN----AAPIIVAYHFNSDLARLQK---------------AFPQ 90
            + +  K+  +   I +A      A I++   + S L R++                    
Sbjct: 1202 DKNSAKLTRMLDDINEAKRNDRDAKIVIFSQWTSMLNRVEMLLIEKNIMPTEHYLRYDGT 1261

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 K           G+  +L     + G GLNL    N ++    WW+     Q I+
Sbjct: 1262 MTPNAKRAAVETFQTTNGEPRILLISLKAGGVGLNLTR-ANHVIVLDPWWNSSAEDQAID 1320

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G  + V+V   + Q +I+E VL+  R K ++   +L+
Sbjct: 1321 RV-----HRIGQLKHVYVKKYVIQASIEERVLELQRAKESMTKAILD 1362



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 16/114 (14%)

Query: 3    QYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
             Y +   E    L        + +      S  ++  Q+ +           +EV  E  
Sbjct: 1042 IYDQLFSESSAILDDLFRRGLQMLNYGYILSLILRLRQVCDHTSLIVRTSQEEEVTTEFC 1101

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
                 I+             F   +   +          +D    Q + + K P
Sbjct: 1102 SMCGDILI----------SPFIQGICNHKYCMACVLETFRDQSITQHFPKVKCP 1145


>gi|194379178|dbj|BAG58140.1| unnamed protein product [Homo sapiens]
          Length = 858

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSL 137
                       T        +E+N+       L      +   G+NL    N ++ F  
Sbjct: 445 RNIDHYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVA-ANRVIIFDA 503

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W+        +   + R  + G  + V+VY  +AQ T+++ +  R  TK ++   +++
Sbjct: 504 SWNPS-----YDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD 557


>gi|50284977|ref|XP_444917.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74691178|sp|Q6FY76|RAD5_CANGA RecName: Full=DNA repair protein RAD5
 gi|49524219|emb|CAG57810.1| unnamed protein product [Candida glabrata]
          Length = 1151

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--- 96
            + + + K      +  I+ L+ + + +    ++V   F+S L  L+    +  + +K   
Sbjct: 965  LIHFDRKERPAKLNALIRHLQQLQDSSAGEQVVVFSQFSSYLDILESQLNEVYSSNKLKV 1024

Query: 97   -----------DPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                           ++++         +L     + G GLNL    +       WW   
Sbjct: 1025 YKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLT-CASYAFMMDPWWSPS 1083

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               Q I+RI      + G   +V V   +   +I+E +L+    K T+ + +
Sbjct: 1084 MEDQAIDRI-----HRIGQTNSVKVIRFVIDGSIEEKMLRIQDRKRTLGEAM 1130


>gi|168229242|ref|NP_001108200.1| helicase-like transcription factor alpha [Oryctolagus cuniculus]
 gi|60390953|sp|Q95216|HLTF_RABIT RecName: Full=Helicase-like transcription factor; AltName:
           Full=RUSH-1; AltName: Full=SWI/SNF-related
           matrix-associated actin-dependent regulator of chromatin
           subfamily A member 3; AltName: Full=Sucrose
           nonfermenting protein 2-like 3
 gi|1655930|gb|AAC18656.1| RUSH-1alpha [Oryctolagus cuniculus]
          Length = 1005

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++                    K   +IQ
Sbjct: 833 NALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 892

Query: 103 EWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +     G   ++     + G GLNL    + +      W+     Q  +R       + 
Sbjct: 893 CFQNTEAGSPTIMLLSLKAGGVGLNLCA-ASRVFLMDPAWNPAAEDQRFDRC-----HRL 946

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 947 GQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 986



 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDL----QGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E    +        + A   +     ++  Q+   
Sbjct: 673 KIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 715


>gi|119189989|ref|XP_001245601.1| hypothetical protein CIMG_05042 [Coccidioides immitis RS]
          Length = 1056

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++    +  ++  I +L A   + G GLNL    + +      ++     Q ++R+   
Sbjct: 939  QRNVALDKFRDDDNITVLLATLGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV--- 994

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETIH 204
               + G  R V     I + +I+E + +  + K  + ++ LN   + K+E + 
Sbjct: 995  --HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREMME 1045


>gi|322821691|gb|EFZ27947.1| hypothetical protein TCSYLVIO_5838 [Trypanosoma cruzi]
          Length = 1530

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPL 111
           I +     +++   + S L  L++              G  +      I+ +  +  I +
Sbjct: 557 IIEGLHEKVVLFSTYRSHLFLLKQLLRKRGLLAEVMHGGLDVKDRQRIIERFTEDTSISV 616

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+NL    N  + F + W+  +     +     R  + G +R V VY + 
Sbjct: 617 LLCSTKASGVGINLVA-ANHCILFDVSWNPAD-----DTQATYRLYRYGQQRPVTVYRIA 670

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              T + +V     +K+ +   +++
Sbjct: 671 TDGTFEHVVFFYALSKTWLHKKIVD 695


>gi|17367114|sp|Q9U7E0|ATRX_CAEEL RecName: Full=Transcriptional regulator ATRX homolog; AltName:
            Full=ATP-dependent helicase xnp-1; AltName: Full=X-linked
            nuclear protein 1
 gi|5901659|gb|AAD55361.1|AF134186_1 XNP-1 [Caenorhabditis elegans]
          Length = 1359

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        K       +N+    +  L+     +   G N+    N ++ F   W+
Sbjct: 1015 DYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVA-ANRVIIFDACWN 1073

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                    +   + R  + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 1074 PSH-----DTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1125


>gi|159109590|ref|XP_001705059.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
 gi|157433137|gb|EDO77385.1| Transcriptional regulator ATRX, putative [Giardia lamblia ATCC
           50803]
          Length = 1367

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
             K      +I     N    ++   +    + L+                     +   
Sbjct: 656 SSKYSLFMELITHIKNNNHRALIFCDYQIIFSMLEHLLSHNDIPYLRLDGTIADVSERDR 715

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + +N   +   L         GLNL  G N ++ F+  W L+     +E   + R  +
Sbjct: 716 ICKSFNANKRYTALLISIKLGSMGLNLT-GANRVILFAPAWSLQ-----VEEQAIARAYR 769

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            G K  V VY L   NT++E ++ R   K+ I ++ L+  K  ++
Sbjct: 770 MGQKHNVVVYKLACINTLEEKMVVRQLQKAGIANVTLDDEKHRSV 814


>gi|302801027|ref|XP_002982270.1| hypothetical protein SELMODRAFT_421707 [Selaginella moellendorffii]
 gi|300149862|gb|EFJ16515.1| hypothetical protein SELMODRAFT_421707 [Selaginella moellendorffii]
          Length = 825

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 26/208 (12%)

Query: 3   QYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK----IK 57
            Y  F + +    +   +I+  +  S      +L++       +       + K      
Sbjct: 519 LYEIFVKSQFVRTMLNSDIQRAHVLSAIGALRKLSSHPGLLQSDMKHVTSAEIKNQPFFH 578

Query: 58  ALEVIIE------------KANAAPIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQ 102
             E +++            + N +           L    +   +        +    I+
Sbjct: 579 RAEELLDLSDVQASLRDVVRHNWSLSGKFVCLQHLLLATIQCNDRIVVASNFTQTLDLIE 638

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                                  Q     LV     W+        +   ++R  + G  
Sbjct: 639 AMCNEHSWKFVR-LDGGTMISERQPLVERLVLVDPDWNPAN-----DAQVMSRIWREGQP 692

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + V +Y L++  +I+E + QR   K  +
Sbjct: 693 KPVKIYRLLSTGSIEEKIYQRQIMKKDL 720


>gi|300121395|emb|CBK21775.2| unnamed protein product [Blastocystis hominis]
          Length = 735

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K      +       ++     + G GLNL    N +     WW+     + +E   + 
Sbjct: 616 KKRQKVETD--GEFPRIMLISLRAGGVGLNLTS-ANTVFMCDPWWN-----EAVENQAIN 667

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G KR V V+ LI +++I+E +++  + K  +    L+
Sbjct: 668 RVFRIGQKRKVKVFRLIIEDSIEEKIIKLQQKKEQLIQSTLD 709


>gi|270010403|gb|EFA06851.1| hypothetical protein TcasGA2_TC009794 [Tribolium castaneum]
          Length = 1540

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                      + D      + +N     +  L      + G G+NL    N ++ F + W
Sbjct: 1208 LDYFRLDGSSSCDSRSMWCRTFNNPTNTRARLFLISTKAGGLGINLVA-ANRVIIFDVSW 1266

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +        +   + R  + G  +  ++Y  +   T++  + +R  TK  I   +++ 
Sbjct: 1267 NPSH-----DIQSIYRVYRFGQTKPCYIYRFVTLGTMEMKIYERQVTKQAISKRVIDE 1319


>gi|257486838|ref|ZP_05640879.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 650

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++                +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALASDLIDPEAEE 640


>gi|238588586|ref|XP_002391769.1| hypothetical protein MPER_08754 [Moniliophthora perniciosa FA553]
 gi|215456891|gb|EEB92699.1| hypothetical protein MPER_08754 [Moniliophthora perniciosa FA553]
          Length = 311

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPI---------IVAYHFNSDLARLQKAFPQGRTLDKD 97
             + +   K+KA+   I +               + + +         K       + +D
Sbjct: 145 MPRFLPSTKMKAMMEEITRLAKDKPDEKWTGCLSLASDYLTEYGILHVKYQGDMNRVKRD 204

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                  ++ K P++       G GLNL    N ++   L W      Q +E     R  
Sbjct: 205 QAVRVFMSKDKAPIMLMSMKCGGVGLNLTR-ANNVISLDLGWS-----QAVENQAFDRVH 258

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + G  R V +   + +NT+++ +L     K  + D  L   + +
Sbjct: 259 RLGQTRTVNIKRFVIKNTVEDRILVLQDRKQQLADGSLGEGQGK 302


>gi|308498547|ref|XP_003111460.1| CRE-XNP-1 protein [Caenorhabditis remanei]
 gi|308241008|gb|EFO84960.1| CRE-XNP-1 protein [Caenorhabditis remanei]
          Length = 1391

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 28/204 (13%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            ++  D   ++    N     ++ ++        +E      V  + +++L +I       
Sbjct: 960  KMVSDDDRDDYTLSNKLVLLMQIIKKC------EEIGDKLLVFSQSLESLSLIKRMLEYM 1013

Query: 70   PII--VAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEG---KIPLLF 113
                      +  L +  + +                  K       +N     +  L+ 
Sbjct: 1014 AGTGQWFADGHEALNQEGETWSWLEGEDYMVIDGSVQTGKRDSVQTHFNSPENLRARLML 1073

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   G N+    N ++ F   W+        +   + R  + G  + V++Y  IAQ
Sbjct: 1074 ISTRAGSLGTNMVA-ANRVIIFDACWNPSH-----DTQSLFRVYRFGQTKPVYIYRFIAQ 1127

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
             T++E + +R  TK +    +++ 
Sbjct: 1128 GTMEERIYKRQVTKESTSMRVVDE 1151


>gi|302892613|ref|XP_003045188.1| SNF2 superfamily RAD5 protein [Nectria haematococca mpVI 77-13-4]
 gi|256726113|gb|EEU39475.1| SNF2 superfamily RAD5 protein [Nectria haematococca mpVI 77-13-4]
          Length = 1146

 Score = 72.5 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN 105
            +  L  +  +      +V   F S L                             + E+ 
Sbjct: 982  MSELRALRREHPKMKSVVFSQFTSFLSLIEPALTKANIKYLRLDGSMAQKARAAVLTEFT 1041

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E K   +L     + G GLNL      +     WW        +E   + R  + G +  
Sbjct: 1042 ERKGFTVLLLSLRAGGVGLNLTS-AGRVFMMDPWWSFA-----VEAQAIDRVHRMGQESE 1095

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V V   + + +++E +L+    K  I     ++N  +K+   +
Sbjct: 1096 VQVKRFVVKESVEERMLKVQERKKFIATSLGMMNDEEKKLQRI 1138


>gi|194899382|ref|XP_001979239.1| GG24840 [Drosophila erecta]
 gi|190650942|gb|EDV48197.1| GG24840 [Drosophila erecta]
          Length = 932

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            DL+     F    +       +Q++N      +L     + G GLNL    N ++   L
Sbjct: 795 QDLSWETLDFNGQLSAKDRELVLQDFNTNNDKRVLLLSLTAGGVGLNL-NVANHMLIVDL 853

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  I  
Sbjct: 854 HWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDYKLNIAK 903



 Score = 34.3 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGA 39
           + Y +F   +      GE I +  +    ++  Q     
Sbjct: 603 EIYDRF--HMLLGFNPGEKIFSIYTLVLLLRLRQFCCHP 639


>gi|121713498|ref|XP_001274360.1| DNA repair helicase rad5,16 [Aspergillus clavatus NRRL 1]
 gi|119402513|gb|EAW12934.1| DNA repair helicase rad5,16 [Aspergillus clavatus NRRL 1]
          Length = 1174

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 50   EVHDEKIKALEVIIEK-ANAAPIIVAYHFN----------SDLARLQKAFP----QGRTL 94
            E+   K+  +  +I+      P +    F               R          +    
Sbjct: 976  EMPSAKLTKIRELIQNWIEENPEVKVVIFTLSLDFVRIATMMCEREGWQCYAFTGKMPIP 1035

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++    +     +  +L A   + G GL++    N  +   LWW+     + I      
Sbjct: 1036 AREQSMKEFRENPEAKVLVASLKAGGIGLDMT-MANKCILVDLWWN-----EAIHEQAFC 1089

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL---KKETI 203
            R  + G ++ V +  LI ++TIDE + Q    K+   +  +      K++TI
Sbjct: 1090 RLYRIGQQKEVEIVILIVRDTIDEYICQLQLKKTAEINSAMGEEELSKRDTI 1141


>gi|261408341|ref|YP_003244582.1| SNF2-like protein [Paenibacillus sp. Y412MC10]
 gi|261284804|gb|ACX66775.1| SNF2-related protein [Paenibacillus sp. Y412MC10]
          Length = 575

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           + K +    +I++ N   +IV   +            D   +   +  G    K    + 
Sbjct: 366 NTKAEKAIELIQQMN-EKVIVFTEYRATQEYLLNYFRDHGLVSVPYRGGMNRGKKDWMMD 424

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  GK  ++ A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G  
Sbjct: 425 LFR-GKAQVMIAT-EAGGEGINLQF-CHHMINFDLPWNPMRVEQRIGRV-----HRLGQT 476

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V +Y L    TI+E +L  L  K  + ++++  L
Sbjct: 477 NDVKIYNLSTSGTIEEHILNLLHEKINMFEMVIGGL 512


>gi|71663704|ref|XP_818842.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884114|gb|EAN96991.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1455

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPL 111
           I +     +++   + S L  L++              G  +      I+ +  +  I +
Sbjct: 483 IIEELHEKVVLFSTYRSHLFLLKQLLRKRGLLADVMHGGLDVKDRQRIIERFTEDASISV 542

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     + G G+NL    N  + F + W+  +     +     R  + G +R V VY + 
Sbjct: 543 LLCSTKASGVGINLVA-ANHCILFDVSWNPAD-----DTQATYRLYRYGQQRPVTVYRIA 596

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
              T + +V     +K+ +   +++
Sbjct: 597 TDGTFEHVVFFYALSKTWLHKKIVD 621


>gi|68472697|ref|XP_719667.1| hypothetical protein CaO19.9644 [Candida albicans SC5314]
 gi|68472956|ref|XP_719543.1| hypothetical protein CaO19.2097 [Candida albicans SC5314]
 gi|74680157|sp|Q5ACX1|RAD5_CANAL RecName: Full=DNA repair protein RAD5
 gi|46441365|gb|EAL00663.1| hypothetical protein CaO19.2097 [Candida albicans SC5314]
 gi|46441494|gb|EAL00791.1| hypothetical protein CaO19.9644 [Candida albicans SC5314]
          Length = 1084

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KA 87
            +Y  +           ++ L+ +  ++  + +IV   F+S L  +Q              
Sbjct: 899  LYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFK 958

Query: 88   FPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            F     ++     ++ +N    +GK+ +L     + G GLNL    +       WW    
Sbjct: 959  FDGRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTT-ASRAYMMDPWWSPSI 1017

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q I+RI      + G    V V   I +N+I+  +L+    K  I
Sbjct: 1018 EDQAIDRI-----HRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059



 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANG 38
           K Y  F+   Y                    +  ++  Q+   
Sbjct: 714 KLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCH 756


>gi|195452364|ref|XP_002073321.1| GK14069 [Drosophila willistoni]
 gi|194169406|gb|EDW84307.1| GK14069 [Drosophila willistoni]
          Length = 808

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--- 87
           K L+  N    +       ++   K++ +           +IV   + S L  ++K    
Sbjct: 620 KLLRPNNPIFQFSNLSSKMKLISAKLQQVL----NETNDKVIVVSQWTSFLDVIKKHLDS 675

Query: 88  -------FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                  F    +       + E+N+      +L     + G GLNL    N L+   L 
Sbjct: 676 LSWETLAFNGKMSFKDRQLVLDEFNDTNNSKRVLLLSLTAGGVGLNL-NVANHLLLIDLH 734

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           W+ +      E+    R  + G  +  ++Y  +  +TI++ +      K  +  +++N  
Sbjct: 735 WNPQL-----EKQAQDRIYRYGQHKKTYIYRFMCVDTIEQRIQALQDYKLELAKMVINGG 789

Query: 199 K 199
           +
Sbjct: 790 R 790


>gi|134118954|ref|XP_771980.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254584|gb|EAL17333.1| hypothetical protein CNBN1600 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1060

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  + +      ++     + G GLNL    N +V F   W             +
Sbjct: 717 ERQEMIDRFQDLERDHFIMLISTRAGGVGLNLTA-ANKVVIFDPSW------------TM 763

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 764 DRAFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 804


>gi|308274464|emb|CBX31063.1| hypothetical protein N47_E45750 [uncultured Desulfobacterium sp.]
          Length = 413

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
             ++        + C   AN     D++        E+I  L   ++      II+   +
Sbjct: 94  SEMDLLRLQKALLICRMAANSTFLVDKQPPGYSSKLEEIDMLLENLKAEKDRKIILFSEW 153

Query: 78  NSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            + L  ++    + +                    +   + +  +      +   GLNLQ
Sbjct: 154 TTMLNLIEPVLEKHKLDYVRLDGSVPQKMRLSLINRFQKDPECKVFI-STNAGSTGLNLQ 212

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++   L W+    +Q I R       + G KR V V+ ++ ++T++E +L+ L +
Sbjct: 213 A-ADTVINVDLPWNPAVLEQRIGR-----AHRMGQKRPVQVFLMVTKDTLEESLLETLSS 266

Query: 187 KSTIQDLLLN 196
           K  +    L+
Sbjct: 267 KHALFLAALD 276


>gi|320032945|gb|EFW14895.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1057

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 23/181 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
            Y       K +    +  +E             +V   + S L  ++ A           
Sbjct: 872  YEGPHTKTKALISHLLGTVEESKHKPDQPPIKSVVFSSWTSHLDLIEIALQDNGIRGFTR 931

Query: 92   ----RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +    + ++ +   I +L A   + G GLNL    + +      ++     Q
Sbjct: 932  LDGTMALKQRNVALDKFRDDENITVLLATLGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQ 990

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
             ++R+      + G  R V     I + +I+E + +  + K  + ++ LN   + K+E +
Sbjct: 991  AVDRV-----HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREMM 1045

Query: 204  H 204
             
Sbjct: 1046 E 1046


>gi|149029137|gb|EDL84422.1| similar to putative repair and recombination helicase RAD26L
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 708

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N    + + K        K+  +      A+                  + 
Sbjct: 516 KMKVLDQLLNHFRKHRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 560

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 561 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-IGANVVILFDPTWNPAN--- 616

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V+ LI+  T++E++  R   K  +  +++ +   +
Sbjct: 617 --DLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 669


>gi|330966658|gb|EGH66918.1| SNF2-related:helicase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 652

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 457 QIERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
            +    +I+   +   +A L++   +                +         +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALARDLIDPEAEE 640


>gi|213402009|ref|XP_002171777.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
 gi|211999824|gb|EEB05484.1| DNA repair protein RAD16 [Schizosaccharomyces japonicus yFS275]
          Length = 895

 Score = 72.5 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             IV   F + L  +     +          G T      TI+ + ++  I +      +
Sbjct: 744 KSIVFSQFAAMLDLVSWRLRKAGFNCVRLEGGMTPKARDATIKAFCSDVNITVFLVSLKA 803

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+     Q ++RI      + G  R + +  L  +N+I+ 
Sbjct: 804 GGIALNLTE-ASQVFMLDPWWNASTQLQAMDRI-----HRIGQCRPIRITTLCIENSIES 857

Query: 179 LVLQRLRTKSTIQDLLLN 196
            ++Q    K  +    L+
Sbjct: 858 KIIQLQEKKEKLVKATLD 875


>gi|303322649|ref|XP_003071316.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240111018|gb|EER29171.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1057

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 23/181 (12%)

Query: 41   YYDEEKHWKEVHDEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQKAFPQG------- 91
            Y       K +    +  +E             +V   + S L  ++ A           
Sbjct: 872  YEGPHTKTKALISHLLGTVEESKHKPDQPPIKSVVFSSWTSHLDLIEIALQDNGIRGFTR 931

Query: 92   ----RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L +    + ++ +   I +L A   + G GLNL    + +      ++     Q
Sbjct: 932  LDGTMALKQRNVALDKFRDDENITVLLATLGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQ 990

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN---ALKKETI 203
             ++R+      + G  R V     I + +I+E + +  + K  + ++ LN   + K+E +
Sbjct: 991  AVDRV-----HRLGQTREVTTVQFIMKESIEEKIAELAKKKQKLANMSLNRGKSDKREMM 1045

Query: 204  H 204
             
Sbjct: 1046 E 1046


>gi|238499905|ref|XP_002381187.1| DNA excision repair protein (Rad5), putative [Aspergillus flavus
            NRRL3357]
 gi|220692940|gb|EED49286.1| DNA excision repair protein (Rad5), putative [Aspergillus flavus
            NRRL3357]
          Length = 1246

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L     + G GLNL    + +     WW        IE   + R  + G  R V
Sbjct: 1140 SPSPRVLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDV 1193

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   + +++I+  +L+    K  I   L
Sbjct: 1194 AVTRFVVKDSIEARMLRVQERKMNIAGSL 1222



 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 3/46 (6%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEK 46
            Y + +R    +++   +        ++ ++  Q     +    + 
Sbjct: 827 IYTRAKRTFNDNIEAGTLLKSFTTIFAQILRLRQTCCHPILTRNKT 872


>gi|169779277|ref|XP_001824103.1| DNA repair protein RAD5 [Aspergillus oryzae RIB40]
 gi|83772842|dbj|BAE62970.1| unnamed protein product [Aspergillus oryzae]
          Length = 1246

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L     + G GLNL    + +     WW        IE   + R  + G  R V
Sbjct: 1140 SPSPRVLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDV 1193

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   + +++I+  +L+    K  I   L
Sbjct: 1194 AVTRFVVKDSIEARMLRVQERKMNIAGSL 1222



 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 3/46 (6%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEK 46
            Y + +R    +++   +        ++ ++  Q     +    + 
Sbjct: 827 IYTRAKRTFNDNIEAGTLLKSFTTIFAQILRLRQTCCHPILTRNKT 872


>gi|302135049|ref|ZP_07261039.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 650

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 74/211 (35%), Gaps = 23/211 (10%)

Query: 8   QRELYCDLQGEN-IEAFNSASKTVK--CLQLANG--AVYYDEEKHWKEVHDEKIKALEVI 62
           ++++  +L+G+         SK  +    Q+       +       + +   K++ +  +
Sbjct: 436 RKDVLPNLKGKQRQTVPVVLSKIERDEYNQIMRSDQHRFARLGGLRQLLERVKVRIVSDL 495

Query: 63  IEKAN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIP 110
           + + +    +I+   +   +A L++   +            +  K    I     +    
Sbjct: 496 MAELDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCR 555

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +     ++ G G NL    N + F  L W               R  + G  R V V   
Sbjct: 556 VFIGTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIP 609

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +A +TID+ + Q L  K  +   L++   +E
Sbjct: 610 LADDTIDQQLWQMLMDKRALASDLIDLEAEE 640


>gi|124512694|ref|XP_001349480.1| DNA repair protein rad54, putative [Plasmodium falciparum 3D7]
 gi|23499249|emb|CAD51329.1| DNA repair protein rad54, putative [Plasmodium falciparum 3D7]
          Length = 1239

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
              I+ K N    +                  G  + K    I ++ +   I +      
Sbjct: 642 YMEILCKENMYKFVR--------------LDGGINIKKRHKVINDFTHSADIFIFLLSSK 687

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S G G+NL    N L+     W+        ++  + R  + G K+  ++Y L    TID
Sbjct: 688 SGGCGINL-ISSNRLILLDPDWNPAN-----DKQALARVWREGQKKICYIYRLFCTGTID 741

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E V QR  +K  + ++++
Sbjct: 742 EKVYQRQISKDGLSNMIV 759


>gi|229075933|ref|ZP_04208909.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-18]
 gi|229098700|ref|ZP_04229640.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-29]
 gi|229117725|ref|ZP_04247094.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-3]
 gi|228665702|gb|EEL21175.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock1-3]
 gi|228684779|gb|EEL38717.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock3-29]
 gi|228707248|gb|EEL59445.1| Uncharacterized ATP-dependent helicase yqhH [Bacillus cereus
           Rock4-18]
          Length = 560

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 52  HDEKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
            + K      +I++ +   +I             F          F  G    K     +
Sbjct: 357 FNSKANKALELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWMKE 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +    +L A   + G G+NLQ+  + ++ + L W+    +Q I RI      + G K
Sbjct: 417 LFQK-HAQVLIAT-EAGGEGINLQF-CSHMINYDLPWNPMRLEQRIGRI-----HRLGQK 468

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             V +Y L  ++T++E +L+ L  K  + + ++  L +
Sbjct: 469 NDVHIYNLATKHTVEEHILKLLYEKINLFERVIGELDE 506


>gi|227821158|ref|YP_002825128.1| superfamily II DNA/RNA helicase and SNF2 family-related protein
           [Sinorhizobium fredii NGR234]
 gi|227340157|gb|ACP24375.1| superfamily II DNA/RNA helicase and SNF2 family-related protein
           [Sinorhizobium fredii NGR234]
          Length = 1072

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 35/227 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVII 63
            +              +     +      +++    +   E          ++ A   I+
Sbjct: 746 REMSEPQMLRYDEARRKGGMMLALLHHIRRISLHPGLLEGETTEEFSASAARVDAAMDIL 805

Query: 64  EK--ANAAPIIVAYHFNSDLARL------------QKAFPQGRTLDKDPCTIQEW----- 104
               +     +V        A                      T+D        +     
Sbjct: 806 RHIKSKGERALVFVENRDVQAWFAEVVRLEFNLDTVMIINGDTTIDARKEITDRFQRHLT 865

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+G   +L   P + G GL L    N ++  S WW+    +Q  +R       + G  + 
Sbjct: 866 NDGGFDVLVLGPRAAGTGLTLTA-ANHVIHLSRWWNPAVEEQCNDR-----THRIGQTKP 919

Query: 165 VFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL---NALKKET 202
           V V+  +A        + D L+ + ++ K TI D +L    A + ET
Sbjct: 920 VTVHIPLAVHTRLGAGSFDCLLQRLMKRKRTIADRVLWPAEATESET 966


>gi|317031845|ref|XP_001393539.2| DNA repair protein RAD5 [Aspergillus niger CBS 513.88]
          Length = 1212

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    + +     WW        IE   + R  + G  R V 
Sbjct: 1105 PPPTVLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQTRDVQ 1158

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V   + +++I+  +L+    K  I   L
Sbjct: 1159 VTRFVVKDSIEGRMLRVQERKMNIAGSL 1186


>gi|119613041|gb|EAW92635.1| RAD26L hypothetical protein, isoform CRA_a [Homo sapiens]
          Length = 700

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 509 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 553

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 554 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN--- 609

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 610 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 662


>gi|325091158|gb|EGC44468.1| DNA repair protein RAD5 [Ajellomyces capsulatus H88]
          Length = 1196

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            Q  +       +     +   +         ++       + HF  +         +   
Sbjct: 1019 QFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAVLAKFTSAHFPDEEDDEDGNNKRQSK 1078

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   ++        +L     + G GLNL    N +     WW      Q I+R+  
Sbjct: 1079 FPSSRSHVK---APPPNVLLISLRAGGVGLNLTA-ANQVFMMDPWWSFATEAQAIDRV-- 1132

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  + V V   I +++I+  +L+    K  I   L
Sbjct: 1133 ---HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIAGSL 1170


>gi|240275323|gb|EER38837.1| DNA repair protein rad5 [Ajellomyces capsulatus H143]
          Length = 1034

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            Q  +       +     +   +         ++       + HF  +         +   
Sbjct: 857  QFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAVLAKFTSAHFPDEEDDEDGNNKRQSK 916

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   ++        +L     + G GLNL    N +     WW      Q I+R+  
Sbjct: 917  FPSSRSHVK---APPPNVLLISLRAGGVGLNLTA-ANQVFMMDPWWSFATEAQAIDRV-- 970

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  + V V   I +++I+  +L+    K  I   L
Sbjct: 971  ---HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIAGSL 1008


>gi|225684512|gb|EEH22796.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb03]
          Length = 1247

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N ++    WW      Q I+R+      + G  R V
Sbjct: 1139 ESPPNVLLISLRAGGVGLNLTA-ANHVIMMDPWWSFATEAQAIDRV-----HRMGQLRDV 1192

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1193 TVTRFIVKDSIEGRILKIQERKMMIAGSL 1221


>gi|225561718|gb|EEH09998.1| DNA repair protein rad5 [Ajellomyces capsulatus G186AR]
          Length = 1196

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            Q  +       +     +   +         ++       + HF  +         +   
Sbjct: 1019 QFTSFLDLIGPQLTRAGIPYLRFDGTMAQKARSAVLAKFTSAHFPDEEDDEDGNNKRQSK 1078

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                   ++        +L     + G GLNL    N +     WW      Q I+R+  
Sbjct: 1079 FPSSRSHVK---APPPNVLLISLRAGGVGLNLTA-ANQVFMMDPWWSFATEAQAIDRV-- 1132

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G  + V V   I +++I+  +L+    K  I   L
Sbjct: 1133 ---HRMGQLKDVSVTRFIVKDSIEGRILRIQERKMMIAGSL 1170


>gi|238881849|gb|EEQ45487.1| DNA repair protein RAD5 [Candida albicans WO-1]
          Length = 1084

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KA 87
            +Y  +           ++ L+ +  ++  + +IV   F+S L  +Q              
Sbjct: 899  LYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLASEEFIVFK 958

Query: 88   FPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            F     ++     ++ +N    +GK+ +L     + G GLNL    +       WW    
Sbjct: 959  FDGRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTT-ASRAYMMDPWWSPSI 1017

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              Q I+RI      + G    V V   I +N+I+  +L+    K  I
Sbjct: 1018 EDQAIDRI-----HRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059



 Score = 35.1 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 10/43 (23%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAF------NSASKTVKCLQLANG 38
           K Y  F+   Y                    +  ++  Q+   
Sbjct: 714 KLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCH 756


>gi|212529790|ref|XP_002145052.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074450|gb|EEA28537.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 852

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 21/166 (12%)

Query: 49  KEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFP-----------QGRT 93
            ++   K+      I K     +A   ++   F                           
Sbjct: 660 HDMPSSKVLKTRDTIRKWFKDGSATKCVIFTQFRDMTKIFANMCTKEKWAFTRLTGDMTI 719

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+D          +I +L A   + G GL++    N  +    WW+    Q        
Sbjct: 720 DDRDRSLKDFQALPEIKILIASLKAGGVGLDITA-ANKCILVEPWWNDAIQQ-----QAF 773

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            R  + G +R V +  L+A+NTID+ +++    K    +  +   +
Sbjct: 774 CRLFRIGQERDVEIVKLVAKNTIDDYMMKLQEMKLKEIEGAIGDAR 819


>gi|170781504|ref|YP_001709836.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156072|emb|CAQ01209.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 688

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 20/196 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALEV 61
           +   +   D         N  +   +  Q    LA            K V   K   +  
Sbjct: 482 RLVAQSELDEAKAQKTGENVFTMVRRIGQAKAVLAADYAAQLARSVGKVVFFAKHVDVMD 541

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
             E   A   + +     D +             +        N+ ++ ++     + G 
Sbjct: 542 QAEATFAKRELKSVSIRGDQS----------PAARQNAIDSFQNDPEVKVVVCSLTAAGV 591

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ   N+++    W   E      E   + R  + G +  V  + +IA  TID  + 
Sbjct: 592 GLNLQAASNVVLAELSWTSAE------ETQAIDRVHRIGQEEPVTAWRIIAAQTIDAKLA 645

Query: 182 QRLRTKSTIQDLLLNA 197
           + +  K+ +    L+ 
Sbjct: 646 ELIDGKAGLAARALDG 661


>gi|320326123|gb|EFW82179.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 650

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALASDLIDPEAEE 640


>gi|156847675|ref|XP_001646721.1| hypothetical protein Kpol_1023p32 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117401|gb|EDO18863.1| hypothetical protein Kpol_1023p32 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1178

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 24/187 (12%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
            N  +            +  +K L+VI +++    I++   F+S L  L++   +  +  +
Sbjct: 990  NEPIELYCPTQKSAKIEALLKHLKVIQDQSAGEQIVIFSQFSSYLDILEQDLNEALSTKE 1049

Query: 97   --------------DPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                              ++E+    +    +L     + G GLNL    +       WW
Sbjct: 1050 TIIYKFDGRLSLKERSTVLKEFTTKDLTKQKILLLSLKAGGVGLNLT-CSSHAFMMDPWW 1108

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNAL 198
                  Q I+RI      + G    V V   I Q +I+E +L+    K TI + + ++  
Sbjct: 1109 SPSMEDQAIDRI-----HRIGQSSNVKVVRFIVQGSIEEKMLKIQERKRTIGEAMDVDED 1163

Query: 199  KKETIHV 205
             +    +
Sbjct: 1164 DRRKRRI 1170


>gi|66519055|ref|XP_393754.2| PREDICTED: transcription termination factor 2 [Apis mellifera]
          Length = 954

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYG 128
            I+A   +S        F     + +    +  +N    K  +L       G       G
Sbjct: 812 NIIASCLSSIKDASFDMFTGSVPIKERQGIMDSFNTSNNKPKILLLSLT-AGGVGLNLVG 870

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           GN L+   + W+ +   Q  +RI      + G K+ VF+Y  I ++TI+E +      K 
Sbjct: 871 GNHLLLIDIHWNPQLEVQAQDRI-----YRFGQKKNVFIYKFICKDTIEERIKHLQERKM 925

Query: 189 TIQDLLLNALKKETI 203
            I   +L+  K  T+
Sbjct: 926 EIAQNVLSGDKNSTV 940


>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1406

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 13/176 (7%)

Query: 26   ASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             ++  K      Q        +  +  + + ++ +   + I         +V   F  + 
Sbjct: 1181 LAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLV-SRFKWNP 1239

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             +            +    I E+N+ K    +  A   +C  G++L  G + ++   + W
Sbjct: 1240 GQEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVW 1298

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +       +ER  ++R  + G +R V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1299 NPA-----VERQAISRAYRIGQQRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1349


>gi|156550929|ref|XP_001603130.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 1160

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 19/169 (11%)

Query: 42   YDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---- 96
              +E     +  + +  L++I I   +         F +DL   Q  + +G    +    
Sbjct: 868  CKKEGDKILLFSQCLNTLDLIEIFLKHIDSQSKQNGFTNDLFNFQDEWKRGLDYFRMDGS 927

Query: 97   -----DPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                      + +N        L      + G G+NL  G N +V F   W+     Q I
Sbjct: 928  VNSEKRNSMCKTFNNPNNKRARLFLISTRAGGLGINL-IGANRVVIFDPSWNPSNDLQSI 986

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G  +  ++Y  ++  T+++ +  R  TK ++   +L+ 
Sbjct: 987  FRI-----FRFGQSKPCYIYRFLSAGTMEQKIYNRQVTKLSLSLRVLDE 1030


>gi|326479937|gb|EGE03947.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1838

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPC 99
            +  + + +  II++       I++   +   L+                     +     
Sbjct: 1310 NSHRTQMVGQIIDESIKAGDKILIFSGYLHTLSYLGSMLGARGHKYCRLDGKTPIATRQA 1369

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +++ +  + +      +   GLN+  G N ++ F   ++        E   + R  + 
Sbjct: 1370 ATRDFRDSDVHVYLISTKAGALGLNI-IGANRVIIFESEYNPT-----WEEQAIGRAYRL 1423

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1424 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMALRAID 1460


>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1410

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 26   ASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             ++  K      Q        +  +  + + ++ +   + I         +V   F  + 
Sbjct: 1185 LAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLV-SRFKWNP 1243

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    I E+N+ K    +  A   +C  G++L  G + ++   + W
Sbjct: 1244 GEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVW 1302

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +       +ER  ++R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1303 NPA-----VERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1353


>gi|323455069|gb|EGB10938.1| hypothetical protein AURANDRAFT_21920 [Aureococcus anophagefferens]
          Length = 157

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNE--- 106
            ++  KA    ++V       L  L +     +   +              I  +N    
Sbjct: 1   MLVKLKARGHRVLVFSQMTKMLDVLGEYCALRQFAYERLDGDTAARDRARRIDRFNAAAA 60

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            +  L      + G G+NL    N +V +   W+        +   + R  + G    V 
Sbjct: 61  DRAFLFLLSTRAGGLGVNL-ATANTVVIYDADWNP-----HNDLQALARAHRLGQTDRVL 114

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           VY L+ + T++E +L+  + K  ++ +++ 
Sbjct: 115 VYRLVCRATVEERILEVAKRKLLLEHVVVE 144


>gi|296333385|ref|ZP_06875838.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675109|ref|YP_003866781.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149583|gb|EFG90479.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413353|gb|ADM38472.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 557

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K   + +++    +    I          +  Q+          K  + +   K    +V
Sbjct: 328 KMLDQKEKQAPA-IDEHTIS-----VLIDRINQVT------QNSKALQVIDLIKKIDDKV 375

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    F          F  G    K       +  GK+ +L A   + G 
Sbjct: 376 IIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-EAGGE 433

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++E +L
Sbjct: 434 GINLQF-CNHMINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVEEHIL 487

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K  + + ++  L
Sbjct: 488 KLLYEKIHLFEKVVGEL 504


>gi|221118789|ref|XP_002158846.1| PREDICTED: similar to RAD54-like 2, partial [Hydra magnipapillata]
          Length = 743

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLL 112
           I+     I   N +     Y +     R         +  +    I+ +N        + 
Sbjct: 613 IEEFLQNIPIKNGSDHEKKYCWKK--GRDYFRLDGSTSTLEREKLIRLFNSKDNKHTNIF 670

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NL    N +V F + W+        +   V R  + G ++   +Y L+A
Sbjct: 671 LLSTRAGCLGINL-IAANRVVVFDVSWNP-----CHDAQAVCRVYRYGQEKPCHIYRLVA 724

Query: 173 QNTIDELVLQRLRTKSTIQ 191
            NT+++ +  R  +K  I 
Sbjct: 725 SNTMEKKIYYRQISKQGIS 743


>gi|257481637|ref|ZP_05635678.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 629

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 36/203 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 451 QVERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 492

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++   +            +  K    I     +    +  
Sbjct: 493 LDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 552

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 553 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRVVVVKIPLAE 606

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TID+ + Q L  K  +   L++
Sbjct: 607 DTIDQQLWQMLMDKRALASDLID 629


>gi|226294171|gb|EEH49591.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb18]
          Length = 1188

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N ++    WW      Q I+R+      + G  R V
Sbjct: 1080 ESPPNVLLISLRAGGVGLNLTA-ANHVIMMDPWWSFATEAQAIDRV-----HRMGQLRDV 1133

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1134 TVTRFIVKDSIEGRILKIQERKMMIAGSL 1162


>gi|256075464|ref|XP_002574039.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
 gi|238659232|emb|CAZ30272.1| DNA repair and recombination protein rad54-related [Schistosoma
           mansoni]
          Length = 776

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 93  TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           T  +    +Q  N+ K    +L     + G GLNL  G N L+ F + W+        + 
Sbjct: 504 TNKQRAEVVQRINDPKSHDRILLLSSRAGGVGLNL-IGANYLILFDMDWNPAN-----DA 557

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + R  + G  R+V +Y L+  + ++E + QR   K  +    L
Sbjct: 558 QAMARIWRPGQSRSVNLYRLVTASGMEERIFQRQAAKLALTSQTL 602


>gi|260827933|ref|XP_002608918.1| hypothetical protein BRAFLDRAFT_85517 [Branchiostoma floridae]
 gi|229294272|gb|EEN64928.1| hypothetical protein BRAFLDRAFT_85517 [Branchiostoma floridae]
          Length = 460

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 91  GRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G    +    ++++N       +L     + G GLNL  GG+ L    + W+        
Sbjct: 339 GVPPRQRMEAVEQFNRNPKGPEVLLVSLQAGGVGLNL-IGGSHLFLLDMHWNPAL----- 392

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           E     R  + G K  V ++  + ++T++E +      K  +   +L+ 
Sbjct: 393 EDQASDRIYRVGQKNDVVIHKFVCKDTVEEKIKDLQNAKKNLAQGVLSG 441



 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 5/45 (11%), Positives = 14/45 (31%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +N++  +   + ++  Q         E    +   +E I     
Sbjct: 190 QQNVKVSHILVQLLRLRQCCCHLSLMKEAVDQETFVNEGIDLTLE 234


>gi|298488366|ref|ZP_07006398.1| DNA helicase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157188|gb|EFH98276.1| DNA helicase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 650

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 36/208 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++                +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVASLREHCLARGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRLVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID+ + Q L  K  +   L++   +E
Sbjct: 613 DTIDQQLWQMLMDKRALASDLIDPEAEE 640


>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
          Length = 1410

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 26   ASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             ++  K      Q        +  +  + + ++ +   + I         +V   F  + 
Sbjct: 1185 LAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLV-SRFKWNP 1243

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    I E+N+ K    +  A   +C  G++L  G + ++   + W
Sbjct: 1244 GEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVW 1302

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +       +ER  ++R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1303 NPA-----VERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1353


>gi|15320696|ref|NP_203208.1| GTA [Epiphyas postvittana NPV]
 gi|15213164|gb|AAK85603.1| GTA [Epiphyas postvittana NPV]
          Length = 501

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 74/213 (34%), Gaps = 32/213 (15%)

Query: 10  ELYCDLQGENIEAFN-SASKTVKCLQLANGAVYYDEEKHWKE--------VHDEKIKALE 60
           ++  +  G+++ +     S   +  Q+            ++             K + + 
Sbjct: 280 DVAVETDGKDLNSMQDVLSLLCRLRQMCCHPALTKCAHMFESHANIFEPTYASSKCQRVL 339

Query: 61  VIIEK---ANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN-- 105
            +I++    +   I++   +   L  +     +           + +++      ++N  
Sbjct: 340 ELIQQVLNTDNDKIVLVSQWVEFLHIIAALLRRHEILILLYTGKQRVEERIAVENQFNAA 399

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +L       G GLNL  GGN +V     W+ +     IE     R  + G K+  
Sbjct: 400 NSPYRVLLMSIKCGGVGLNL-IGGNHIVVLEPHWNPQ-----IELQAQNRIHRLGQKKQT 453

Query: 166 FVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
           +VY ++    N+++  +  R   K T  + + +
Sbjct: 454 YVYKMLHDEDNSVERYMKTRQDNKLTFVNKVFD 486


>gi|328773098|gb|EGF83135.1| hypothetical protein BATDEDRAFT_7470 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 104

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I ++       G GLNL      ++   LWW+       +E   + R  + G +  V
Sbjct: 1   DPYISVMLVSLKCGGVGLNL-SIACRVIICDLWWNPA-----VEDQAIDRVHRIGQRVDV 54

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V YL+A++TI+E +L    +K  I    L   +
Sbjct: 55  RVSYLVAKDTIEERILIMQESKRQIAAGALGEGE 88


>gi|312074223|ref|XP_003139874.1| hypothetical protein LOAG_04289 [Loa loa]
 gi|307764965|gb|EFO24199.1| hypothetical protein LOAG_04289 [Loa loa]
          Length = 879

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 61/220 (27%), Gaps = 33/220 (15%)

Query: 3   QYHKFQRELYCDLQ-------GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            Y     + Y   +              +  +  ++  +       +   +       + 
Sbjct: 257 IYRAILSKNYKYFENMNDKKTEHTGSKMSLLNVLMQLRKCVAHPYLFVGVEPEPFKEGDH 316

Query: 56  I---------KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
           +             + +  A    +++    +  L   Q          +          
Sbjct: 317 LFEVSGKFFLLDRLLSLLSAKGHRVLIFSQMSRVLDIAQDYLIYKGYNYRRLDGSVRAEE 376

Query: 98  --PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +     +I        + G GLNL   G+ ++F    ++ +      +     R
Sbjct: 377 RFVAVNRFQTNSEIFCFLLSTRAGGLGLNLTA-GDTVIFLDSDFNPQN-----DIQAAAR 430

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + G  + V V  LIA+ T+++++      K  +   +L
Sbjct: 431 CHRIGQMKPVKVIRLIARYTVEDMIHCHAARKLQMTHEIL 470


>gi|260584382|ref|ZP_05852129.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
 gi|260157900|gb|EEW92969.1| SNF2 family DNA/RNA helicase [Granulicatella elegans ATCC 700633]
          Length = 790

 Score = 72.1 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 29/187 (15%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
            ++    EAF+     +K  ++A           +     EKIK +  I ++   N   +
Sbjct: 573 QIELYESEAFSEKCSVMKLRRMA-----------FLGEDSEKIKQIIDICKEARENGMKV 621

Query: 72  IVAYHFNSDLARLQKAFPQGR---------TLDKDPCTIQEWNEGKIP-LLFAHPASCGH 121
           +V   F +D+    +               +  +    I E+++     +L A   + G 
Sbjct: 622 LVFSFFKTDVLYRLRELVPNTASDILSGDISPARRQEVIDEFSKDSNQTVLLAQIEAGGV 681

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+Q   NI++     W     Q       ++R  + G  R V VY L+ +++IDE ++
Sbjct: 682 GLNIQS-ANIVILCEPQWKPSTEQ-----QAISRVYRMGQTRDVLVYRLLTKDSIDEPIM 735

Query: 182 QRLRTKS 188
             +  K 
Sbjct: 736 ALIHKKE 742


>gi|91807128|ref|NP_075996.2| RAD26L hypothetical protein isoform 2 [Mus musculus]
 gi|172046593|sp|Q9JIM3|RAD26_MOUSE RecName: Full=Putative DNA repair and recombination protein
           RAD26-like
          Length = 699

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 507 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 551

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 552 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 607

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 608 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 660


>gi|72387419|ref|XP_844134.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|62360642|gb|AAX81053.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
 gi|70800666|gb|AAZ10575.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 1497

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
             K+     ++    +     +++   + S L  L                G  + +   
Sbjct: 511 SPKLNLTLSLLRYISEDLREKVVLFSTYKSHLYLLMFLLRQRGVVSEVLHGGVEVKERQL 570

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  ++ +  + +L     + G G+NL    N  + F + W+  +     +     R  +
Sbjct: 571 IIDRFSVDPSLRVLLCSTKALGVGINLVA-ANHCILFDVSWNPSD-----DTQATYRLYR 624

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G +R V +Y +  + T + +V     +KS I   +++
Sbjct: 625 YGQRRPVTIYRIATEGTFEHVVFFYALSKSWIHKKIVD 662


>gi|261327295|emb|CBH10271.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1497

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPC 99
             K+     ++    +     +++   + S L  L                G  + +   
Sbjct: 511 SPKLNLTLSLLRYISEDLREKVVLFSTYKSHLYLLMFLLRQRGVVSEVLHGGVEVKERQL 570

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I  ++ +  + +L     + G G+NL    N  + F + W+  +     +     R  +
Sbjct: 571 IIDRFSVDPSLRVLLCSTKALGVGINLVA-ANHCILFDVSWNPSD-----DTQATYRLYR 624

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G +R V +Y +  + T + +V     +KS I   +++
Sbjct: 625 YGQRRPVTIYRIATEGTFEHVVFFYALSKSWIHKKIVD 662


>gi|302144116|emb|CBI23221.3| unnamed protein product [Vitis vinifera]
          Length = 135

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 62  IIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           ++E   +A  +V   F S L          ++      G    ++    + +N+    +L
Sbjct: 1   MVETDGSAKALVFSQFVSFLDLIDYSLQKSQINCVKLVGDVAARNALVSRFFNDSDCRIL 60

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G  LNL    + +     ++        +E        + G  +AV +   + 
Sbjct: 61  LTTSEAGGLSLNL-SVASYVFLMEPFFSSA-----VELQACDGVYRIGQHKAVRIVKFVT 114

Query: 173 QNTIDELVLQRLRTKSTIQDL 193
           +NTI+E +L+    K+     
Sbjct: 115 ENTIEERILELQAKKNQNSQR 135


>gi|16079514|ref|NP_390338.1| RNA polymerase-associated helicase protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310381|ref|ZP_03592228.1| hypothetical protein Bsubs1_13471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314705|ref|ZP_03596510.1| hypothetical protein BsubsN3_13392 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319628|ref|ZP_03600922.1| hypothetical protein BsubsJ_13313 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323904|ref|ZP_03605198.1| hypothetical protein BsubsS_13442 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731040|sp|P54509|YQHH_BACSU RecName: Full=Uncharacterized ATP-dependent helicase yqhH
 gi|1303889|dbj|BAA12545.1| YqhH [Bacillus subtilis]
 gi|2634892|emb|CAB14389.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 557

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 19/199 (9%)

Query: 3   QYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   ++    D + +    I+    +    +  Q+          K  + V   K    
Sbjct: 322 VYMTLKK--MLDQKEKQAPAIDEDTISVLIDRINQVT------QNSKALQVVDLIKKIDD 373

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +VII     A  I    F          F  G    K       +  GKI +L A   + 
Sbjct: 374 KVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKIQVLIAT-EAG 431

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++E 
Sbjct: 432 GEGINLQF-CNHMINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVEEH 485

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+ L  K  + + ++  L
Sbjct: 486 ILKLLYEKIHLFEKVVGEL 504


>gi|70998502|ref|XP_753973.1| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|66851609|gb|EAL91935.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1827

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 10/156 (6%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNE-GK 108
            +  E IKA + ++  +++ P +        +++       G+T         + +N    
Sbjct: 1399 IISESIKAGDKVLVFSHSIPTLNYVEHVLKISKRSYRRLDGKTPISTRQAATKSFNTVSD 1458

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLN+  G N +V F   ++      + E   V R  + G ++ VFVY
Sbjct: 1459 EKVYLISTRAGGLGLNI-PGANRVVIFDFSFNP-----IWEEQAVGRAYRLGQQKPVFVY 1512

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              IA  T +E++  +   K+ +   +++  KK  I 
Sbjct: 1513 RFIAGGTFEEIIYNKAIFKTQLAVRVVD--KKNPIR 1546


>gi|229119309|ref|ZP_04248612.1| hypothetical protein bcere0017_55440 [Bacillus cereus Rock1-3]
 gi|228664175|gb|EEL19713.1| hypothetical protein bcere0017_55440 [Bacillus cereus Rock1-3]
          Length = 408

 Score = 72.1 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 74/200 (37%), Gaps = 18/200 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 227 KLYKEFKKHHIVEIGEELLLGDTPAAKKLYLRQLAGSY------------NENKLQYVKD 274

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           ++E  N   II         A +        T++ +   +  + + +  +      +   
Sbjct: 275 LVESTNDRIIIFYNFKKEYEALVDLIDKPISTVNGNLKDLTAYEKFENSVTLIQYQAGAM 334

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ    I+ F             +      R  + G +R  F YYL+   +I+  +L
Sbjct: 335 GLNLQKANKIVYFTLTDKS------ELFEQSKKRTHRIGQERPCFYYYLLTDGSIEWRML 388

Query: 182 QRLRTKSTIQDLLLNALKKE 201
             L+ +    D+L     K+
Sbjct: 389 DVLKERKDYTDVLFEKEAKK 408


>gi|291484902|dbj|BAI85977.1| hypothetical protein BSNT_03666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 557

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 19/199 (9%)

Query: 3   QYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   ++    D + +    I+    +    +  Q+          K  + V   K    
Sbjct: 322 VYMTLKK--MLDQKEKQAPAIDEDTISVLIDRINQVT------QNSKALQVVDLIKKIDD 373

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +VII     A  I    F          F  G    K       +  GKI +L A   + 
Sbjct: 374 KVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKIQVLIAT-EAG 431

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++E 
Sbjct: 432 GEGINLQF-CNHMINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVEEH 485

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+ L  K  + + ++  L
Sbjct: 486 ILKLLYEKIHLFEKVVGEL 504


>gi|294955610|ref|XP_002788591.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239904132|gb|EER20387.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 236

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 22/181 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQ----------K 86
                   + +   K+K +      ++ +      ++ + F S L   +           
Sbjct: 48  IMGRIPSREVLESGKVKVVLDTVQSMLNEDATNKFLIFFQFTSLLEITKEEIERRGLGSC 107

Query: 87  AFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +       +   E    +L     + G G+NLQ   N       WW+    
Sbjct: 108 GVSNASCGQQRSLLWDPFLVQEASFNILLISLRAAGEGINLQA-ANKAFVIDPWWNPAAE 166

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                   V R  + G  R V V   +  NTI+E +    R K    D  +   +  + H
Sbjct: 167 L-----QAVQRAHRLGQTRRVDVVKFVVTNTIEERIRTLQRKKQLAADTTVGGDENASYH 221

Query: 205 V 205
           +
Sbjct: 222 L 222


>gi|8163804|gb|AAF73858.1|AF217319_1 putative repair and recombination helicase RAD26L [Mus musculus]
          Length = 685

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 493 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 537

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 538 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 593

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 594 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 646


>gi|302896542|ref|XP_003047151.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
 gi|256728079|gb|EEU41438.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
          Length = 971

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                           KD    +  N  +  +  A     G  L+L    N ++   LW+
Sbjct: 814 MGLNFLYYNRTANAKQKDKALREFRNNPEQTIFLASMKCGGQALDL-PVANRVIIVDLWY 872

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +     + +E+    R  + G K+   +  ++A+ +IDE + +    K TI +  L  
Sbjct: 873 N-----KTVEQQAFKRVHRIGQKKETHLVRILARGSIDERLYKLQNAKETIINRALQD 925


>gi|195172271|ref|XP_002026922.1| GL12824 [Drosophila persimilis]
 gi|194112690|gb|EDW34733.1| GL12824 [Drosophila persimilis]
          Length = 237

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVF 134
           + S               +     ++++N     I +      + G GLNLQ   + +V 
Sbjct: 7   YLSWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDIFVFLLSTRAGGLGLNLQT-ADTVVI 65

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F   W+  +     +     R  + G +  V V  L+  N+++E +L   R K  + + +
Sbjct: 66  FDSDWNPHQ-----DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKV 120

Query: 195 LNA 197
           + A
Sbjct: 121 IQA 123


>gi|12719426|ref|NP_075497.1| hypothetical protein phiSLTp35 [Staphylococcus phage phiSLT]
 gi|12697856|dbj|BAB21728.1| unnamed protein product [Staphylococcus phage phiSLT]
          Length = 116

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +Q         R  
Sbjct: 13  KAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLY 67

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G      +++++  NTID+ V + L+ K   Q+ L+ A+K   
Sbjct: 68  RQGQNHTTIIHHIMTDNTIDQKVYEALQNKELTQEELMKAIKARI 112


>gi|89099218|ref|ZP_01172096.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. NRRL B-14911]
 gi|89086064|gb|EAR65187.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. NRRL B-14911]
          Length = 562

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K    +VII     A  +    F          F  G    K     + +    + +L A
Sbjct: 369 KGIDDKVIIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMRELFKN-NVQVLIA 427

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ+  N ++ + L W+    +Q I RI      + G ++ V +Y    ++
Sbjct: 428 T-EAGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI-----HRLGQEKDVMIYNFAVKD 480

Query: 175 TIDELVLQRLRTKSTIQDLLLNAL 198
           T++E +L+ L  K  + + ++  L
Sbjct: 481 TVEEHILKLLYEKIHLFEKVIGEL 504


>gi|159126293|gb|EDP51409.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1827

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 10/156 (6%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNE-GK 108
            +  E IKA + ++  +++ P +        +++       G+T         + +N    
Sbjct: 1399 IISESIKAGDKVLVFSHSIPTLNYVEHVLKISKRSYRRLDGKTPISTRQAATKSFNTVSD 1458

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLN+  G N +V F   ++      + E   V R  + G ++ VFVY
Sbjct: 1459 EKVYLISTRAGGLGLNI-PGANRVVIFDFSFNP-----IWEEQAVGRAYRLGQQKPVFVY 1512

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              IA  T +E++  +   K+ +   +++  KK  I 
Sbjct: 1513 RFIAGGTFEEIIYNKAIFKTQLAVRVVD--KKNPIR 1546


>gi|123506672|ref|XP_001329249.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121912202|gb|EAY17026.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 871

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 30/213 (14%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DEKIKA 58
           + Q  +    + E ++       T +    +N  + +     ++++          K++ 
Sbjct: 567 ELQNSIMAKGKKEGLDNNKQMYITKRL---SNSPILFFPRDVFEKIDPEYLFSRTPKLQL 623

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNE 106
           L+VI++K        ++   + S +  L+                 T  +    I+ +  
Sbjct: 624 LDVILQKLITTGHRFLIYSQWTSMMDLLEIYLNWRKIETSRIDGSVTTSERSRLIKSFVV 683

Query: 107 GKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              P+  +     S   GLNLQ   + ++ F   ++       IE     R  + G   +
Sbjct: 684 PGSPVKGMLLSTRSSAFGLNLQA-ADTVILFDSDYNP-----FIELQASARVHRMGQTNS 737

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V +  L+  +T +E +L+  R K  +   ++ A
Sbjct: 738 VVIVRLMTNDTGEEHILRIARRKFKMGQQIITA 770


>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
          Length = 1465

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 13/176 (7%)

Query: 26   ASKTVKCL----QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
             ++  K      Q        +  +  + + ++ +   + I         +V   F  + 
Sbjct: 1240 LAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLV-SRFKWNP 1298

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                          +    I E+N+ K    +  A   +C  G++L  G + ++   + W
Sbjct: 1299 GEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISL-VGASRVILLDVVW 1357

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +       +ER  ++R  + G KR V+ Y+L+A+ T +     +   K  I +L+ 
Sbjct: 1358 NPA-----VERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVF 1408


>gi|258565611|ref|XP_002583550.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907251|gb|EEP81652.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1056

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 64   EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEG-KIPL 111
                    +V   + S L  ++ A                +L +    +  + +   I +
Sbjct: 896  PDQPPIKSVVFSAWTSHLDLIEIALQDSGITGFTRLDGTMSLKQRNAALDAFRDDDNITV 955

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L A   + G GLNL    + +      ++     Q I+R+      + G  R V     I
Sbjct: 956  LLATLGAGGVGLNLTS-ASRVYVMEPQYNPAAVAQAIDRV-----HRLGQTREVTTVQFI 1009

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + +I+E + +  + K  + ++ LN  K +
Sbjct: 1010 MKESIEEKIAELAKKKQQLANMSLNRGKSD 1039


>gi|121712770|ref|XP_001273996.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119402149|gb|EAW12570.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1818

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             R          +     + + +N G +  +      + G GLN+  G N +V F   + 
Sbjct: 1437 NRSYCRLDGKTPIFSRQASTKRFNTGSEEQVYLISTRAGGLGLNI-PGANRVVIFDFSFS 1495

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + E   V R  + G ++ V+VY  I+  T +E++  +   K+ +   +++
Sbjct: 1496 P-----VWEEQAVGRAYRLGQQKPVYVYRFISGGTFEEIMYNKAVFKTQLAFRVVD 1546


>gi|321311942|ref|YP_004204229.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis BSn5]
 gi|320018216|gb|ADV93202.1| putative RNA polymerase-associated helicase protein [Bacillus
           subtilis BSn5]
          Length = 557

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 19/199 (9%)

Query: 3   QYHKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   ++    D + +    I+    +    +  Q+          K  + V   K    
Sbjct: 322 VYMTLKK--MLDQKEKQAPAIDEDTISVLIDRINQVT------QNSKALQVVDLIKKIDD 373

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +VII     A  I    F          F  G    K       +  GKI +L A   + 
Sbjct: 374 KVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKIQVLIAT-EAG 431

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++E 
Sbjct: 432 GEGINLQF-CNHMINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVEEH 485

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+ L  K  + + ++  L
Sbjct: 486 ILKLLYEKIHLFEKVVGEL 504


>gi|154286186|ref|XP_001543888.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150407529|gb|EDN03070.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 219

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +   +I+E+  + +I +L     + G GL+L    N  +F  LWW+     + IE+
Sbjct: 1   MPIRQREKSIEEFSKDPEIRILVCSLRTAGTGLDLTA-ANKCIFVDLWWN-----EAIEQ 54

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  +   KR V    ++ +N+ID+ +      KS   D +L +
Sbjct: 55  QAFFRLFRINQKRKVEFVRVVVRNSIDDRLQLLQEDKSNNIDGVLGS 101


>gi|19072776|gb|AAL84633.1|AF474993_1 putative transcription regulator WdMOT1 [Exophiala dermatitidis]
          Length = 1703

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 56/220 (25%), Gaps = 68/220 (30%)

Query: 18   ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------------HDEKIKALE 60
            +     +         +L N      +E   +                   H  K+ AL 
Sbjct: 1446 DKEAKQHIFQALQYMRKLCNSPALVVKEGTKQYETISKQLAASKSSLRDVAHAPKLTALR 1505

Query: 61   VIIEKA-----------------NAAPIIVAYHFNSDLARLQK-------------AFPQ 90
             ++                    +    ++       L  +Q                  
Sbjct: 1506 DLLVDCGIGVSNDSNEMSASNYVSQHRALIFCQMKEMLDMVQNEVLAKLLPSVQFLRLDG 1565

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                 K    + ++N                        + ++F    W+ ++     + 
Sbjct: 1566 SVEATKRQNIVNQFNNDPSY----------------DCADTVIFVEHDWNPQK-----DI 1604

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
              + R  + G K+ V VY LI + T++E ++   R K  +
Sbjct: 1605 QAMDRAHRIGXKKVVNVYRLITRGTLEEKIMXLQRFKIDV 1644


>gi|325115673|emb|CBZ51228.1| putative SNF2 family N-terminal domain-containing protein [Neospora
           caninum Liverpool]
          Length = 1837

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                 +      + G+GL L +  ++ VF        +    IER  + R  + G  + 
Sbjct: 575 EADCAAVFLVSVRAGGYGLTLSHCASVCVFLEGG---GDGNPQIERQAIARLYRQGQTKK 631

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V V  LI ++T++E++  R R K  +   +L
Sbjct: 632 VKVIRLITKSTVEEVMYWRGRQKLKLASDVL 662


>gi|289625868|ref|ZP_06458822.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 652

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 36/203 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++                +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TID+ + Q L  K  +   L++
Sbjct: 613 DTIDQQLWQMLMDKRALASDLID 635


>gi|218189914|gb|EEC72341.1| hypothetical protein OsI_05562 [Oryza sativa Indica Group]
          Length = 2184

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 60/231 (25%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            K ++  ++ N  +      ++           K+  L+ I+ K +     +++       
Sbjct: 1262 KCMELRKVCNHPLLSYPFMNYYGKDFIIRSCGKLWNLDRILIKLHRSGHRVLLFSTMTKL 1321

Query: 81   LARLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYG 128
            L  L++     + + +              I ++N       +      + G GLNLQ  
Sbjct: 1322 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNLQS- 1380

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--------------- 173
             + +V +    + +      E   V R  + G  R V V Y+ A                
Sbjct: 1381 ADTVVIYDPDPNPQN-----EEQAVARAHRIGQTRDVKVIYMEAVVDNISSYQKEDELRN 1435

Query: 174  -----------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                              +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1436 GGSGDLEDDLAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTH 1486


>gi|237721132|ref|ZP_04551613.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449967|gb|EEO55758.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 578

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCDL-------QGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   + ++   L         +  ++ N     +     Q++        +   + VH
Sbjct: 366 KEYKAAEADMVKYLKKYKNASDEQVQKSMNGAVMVQMQLLKQIS---ARGKIKAVCEFVH 422

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D      ++I+         V      +  +            K        N     L+
Sbjct: 423 DVIDGGEKLILF---GYLKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDCKLI 479

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             +  S G GL L    + + F    W   + +         R  + G K  V  YY + 
Sbjct: 480 ILNFKSGGTGLTLTA-ASRVAFIEFPWTFSDCE-----QAEDRAHRNGQKNNVNCYYFLG 533

Query: 173 QNTIDELVLQRLRTKSTIQDLLL---NALKKETIHV 205
           ++TID+ +   ++TK  I + +    + +++  +++
Sbjct: 534 KDTIDKYMYDVIQTKKNIANGVTGTDDQVEENMVNL 569


>gi|40882196|emb|CAF06022.1| related to regulator of chromatin [Neurospora crassa]
          Length = 451

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 7/120 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             D            ++ +    I+ +  + +  +L     +   GLNL    + +    
Sbjct: 317 KQDAGVAALLVHGKTSISERTRLIRTFQGDPQAFILIMSVGTGAVGLNLTA-ASHVHVVE 375

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+       +E   + R  + G  + V V   I + T+++ ++     K T+  L  +
Sbjct: 376 PHWNPS-----VEAQAIARAVRMGQTKNVLVTRYIMKRTVEDNIVALQTKKQTLAKLTFD 430


>gi|330894793|gb|EGH27454.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 650

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 73/211 (34%), Gaps = 23/211 (10%)

Query: 8   QRELYCDLQGEN-IEAFNSASKTVK--CLQLANG--AVYYDEEKHWKEVHDEKIKALEVI 62
           ++++  +L+G+         S+  +    Q+       +       + +   K++ L  +
Sbjct: 436 RKDVLPNLKGKQRQTVPVILSQVERDEYNQIMRSDQHRFARLGAMRQLLERVKVRILADL 495

Query: 63  IEKAN-AAPIIVAYHFNSDLARLQKAFPQGR-----------TLDKDPCTIQEWNEGKIP 110
           + + +    +I+   +   +A L++   +                +         +    
Sbjct: 496 MAELDVDDKVILFCEYQESVATLREHCLKMDVGCVTLVGSDSPKKRQKAIDAFQQDPDCR 555

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +     ++ G G NL    N + F  L W               R  + G  R V V   
Sbjct: 556 VFIGTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIP 609

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +A++TID+ + Q L  K  +   L++   +E
Sbjct: 610 LAEDTIDQQLWQMLMDKRALASDLIDPEAEE 640


>gi|293372914|ref|ZP_06619283.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|298480929|ref|ZP_06999124.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
 gi|292631982|gb|EFF50591.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|298272952|gb|EFI14518.1| SNF2 family domain-containing protein [Bacteroides sp. D22]
          Length = 578

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 24/216 (11%)

Query: 2   KQYHKFQRELYCDL-------QGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVH 52
           K+Y   + ++   L         +  ++ N     +     Q++        +   + VH
Sbjct: 366 KEYKAAEADMVKYLKKYKNASDEQVQKSMNGAVMVQMQLLKQIS---ARGKIKAVCEFVH 422

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           D      ++I+         V      +  +            K        N     L+
Sbjct: 423 DVIDGGEKLILF---GYLKEVVAELKKEFPKAVTVTGSDSVNQKQYAVDSFQNNPDCKLI 479

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             +  S G GL L    + + F    W   + +         R  + G K  V  YY + 
Sbjct: 480 ILNFKSGGTGLTLTA-ASRVAFIEFPWTFSDCE-----QAEDRAHRNGQKNNVNCYYFLG 533

Query: 173 QNTIDELVLQRLRTKSTIQDLLL---NALKKETIHV 205
           ++TID+ +   ++TK  I + +    + +++  +++
Sbjct: 534 KDTIDKYMYDVIQTKKNIANGVTGTDDQVEENMVNL 569


>gi|32473602|ref|NP_866596.1| SNF2 family helicase [Rhodopirellula baltica SH 1]
 gi|32398282|emb|CAD78377.1| helicase, Snf2 family [Rhodopirellula baltica SH 1]
          Length = 914

 Score = 71.7 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 31/202 (15%)

Query: 19  NIEAFNSASKTVKCLQ---------LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            I A    ++  +              +     D+E        E++  L   +      
Sbjct: 591 QIAAKKFMTEMDRLRMQKCLLMARMACDSTYLLDQEADEYSSKLERLGELLEGLIADPTR 650

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI-QEWNEGKIPLLFAHPAS 118
            I++   +   L R++    Q               K    + +  N+ +  ++     +
Sbjct: 651 KIVLFSEWRRMLTRVENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQNDPECRVINMT-NA 709

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---- 174
              GLNLQ   N ++   L W+    +Q I R       + G +  V VY L+  +    
Sbjct: 710 GSTGLNLQA-ANTVINVDLPWNPAVLEQRIAR-----AYRMGQENPVHVYKLVTTSEPTP 763

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+E +L  L +K  + D  LN
Sbjct: 764 TIEEGLLTTLASKQDLADASLN 785


>gi|154686721|ref|YP_001421882.1| YqhH [Bacillus amyloliquefaciens FZB42]
 gi|154352572|gb|ABS74651.1| YqhH [Bacillus amyloliquefaciens FZB42]
          Length = 556

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 19/199 (9%)

Query: 3   QYHKFQRELYCDLQGENIEA---FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            Y   ++    D + +   A      A+   +  Q+          K  + V   +    
Sbjct: 321 VYMTLKK--MLDQKDKQAPAFDDQTIANLMDRINQVT------QNSKAIQVVDLIQKIND 372

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +VII     A  I    F          F  G    K       +  GK+ +L A   + 
Sbjct: 373 KVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-EAG 430

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++E 
Sbjct: 431 GEGINLQF-CNHIINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVEEH 484

Query: 180 VLQRLRTKSTIQDLLLNAL 198
           +L+ L  K  + + ++  L
Sbjct: 485 ILKLLYDKIHLFENVVGEL 503


>gi|330885778|gb|EGH19927.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 652

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 36/203 (17%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 457 QVERD---EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAE 498

Query: 66  AN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++                +  K    I     +    +  
Sbjct: 499 LDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 558

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 559 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 612

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           +TID+ + Q L  K  +   L++
Sbjct: 613 DTIDQQLWQMLMDKRALASDLID 635


>gi|145546039|ref|XP_001458703.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426524|emb|CAK91306.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1228

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                ++   F  +    Q          ++              L     +   GLNL  
Sbjct: 1083 DMIRLLEEKFQEEEIWCQVVTGAMSVEQRNKVIQSFEQHPAFTALILSLRATSTGLNLT- 1141

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +     WW+       IE   + R  + G K+ V V   +  NTI+E +    + K
Sbjct: 1142 MANHVFLVDPWWNPA-----IEDQAIGRADRIGQKKQVNVIRFLCANTIEEKINLLHQKK 1196

Query: 188  STIQDLLLNALKKE 201
              +   ++   +K+
Sbjct: 1197 KKMIRKVIANDQKK 1210


>gi|315042015|ref|XP_003170384.1| DNA repair protein rad5 [Arthroderma gypseum CBS 118893]
 gi|311345418|gb|EFR04621.1| DNA repair protein rad5 [Arthroderma gypseum CBS 118893]
          Length = 1181

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N +     WW        +E   + R  + G  R V V   
Sbjct: 1078 VLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVKVVRF 1131

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +N+I+  +L+    K  I   L
Sbjct: 1132 VVKNSIEGRILKIQERKMMIAGSL 1155


>gi|311743689|ref|ZP_07717495.1| possible DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312819|gb|EFQ82730.1| possible DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 594

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 31/225 (13%)

Query: 2   KQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLAN---------GAVYYDEEKHWKE- 50
           K Y  F+ E+  +L     ++  +  SK     +LA+         G          K  
Sbjct: 359 KVYDDFEAEMLAELPDGTELQVMDVMSKFGHLSRLASAAADVEVTYGPDVDQVTGLEKRH 418

Query: 51  ------VHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
                     K+ AL  ++++    P++V       +                   G+T+
Sbjct: 419 VSLTLKDPSWKVDALLEVLDERPGQPVVVFAPSRQLVTLAGEAAAKAGLRVGYIVGGQTM 478

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +   T+  +  G++ ++     + G GL L      +VF    W L E  Q  +R    
Sbjct: 479 TERTATVTAFQGGELDVVCVTTGAGGVGLTLTA-AKTVVFLQRPWSLVESIQAEDRCHRI 537

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                     + +  ++A+NTID  V   LR ++     L+   +
Sbjct: 538 GS---EQHDCIEIVDIVARNTIDTRVRAVLRERAGQLADLVQDPR 579


>gi|320590298|gb|EFX02741.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1240

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 17/148 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            +        +V   + S L               +   +     +        ++  + +
Sbjct: 1080 MPDEQPIKSVVFSGWTSHLDLIERALRDNGIAFCRLDGKMSRTARTQAMDTFRDDPSVHV 1139

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            +     + G GLNL   GN +      ++     Q I+R+      + G KR V     I
Sbjct: 1140 ILVSIMAGGLGLNLTA-GNYVYVMEPQYNPAAEAQAIDRV-----HRLGQKRPVHTVRFI 1193

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALK 199
               + +E +L+    K  + +L LN  +
Sbjct: 1194 MNRSFEERMLEIQADKIKLANLSLNRDR 1221


>gi|242021061|ref|XP_002430965.1| hypothetical protein Phum_PHUM506220 [Pediculus humanus corporis]
 gi|212516185|gb|EEB18227.1| hypothetical protein Phum_PHUM506220 [Pediculus humanus corporis]
          Length = 687

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ L      + G G+NL  G N  + F + W+     Q I RI      + G  +   V
Sbjct: 483 RLRLFLISTKAGGIGINLT-GANRAILFDVSWNPSHDTQSIFRI-----YRIGQNKPCHV 536

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Y  +A  T++E + +R   K +I   +++ L
Sbjct: 537 YRFVASGTMEEKIYERQIMKQSISYRVVDEL 567


>gi|322505242|emb|CAM39730.2| DNA repair protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1288

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 21/154 (13%)

Query: 53   DEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTI 101
              K + L   I        ++V   F + L   Q            +    T+ +    +
Sbjct: 1084 SSKTQYLIDKIRSLPADDKVVVFSTFLTYLRCAQHWLQAAGVSSAVYTGSMTMKQKHSLL 1143

Query: 102  QEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++        +L A  +SCG GLNL    N        W+        E   + R  
Sbjct: 1144 ELFHDATQPASPRVLLATTSSCGVGLNLT-CANHCFLMEPSWNPGT-----EEQALNRIH 1197

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + G  + V +  LIA  TI++ + Q    K  + 
Sbjct: 1198 RIGQTKPVTITKLIADGTIEQNISQLCERKRALS 1231


>gi|154340547|ref|XP_001566230.1| DNA repair protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1288

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 21/154 (13%)

Query: 53   DEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTI 101
              K + L   I        ++V   F + L   Q            +    T+ +    +
Sbjct: 1084 SSKTQYLIDKIRSLPADDKVVVFSTFLTYLRCAQHWLQAAGVSSAVYTGSMTMKQKHSLL 1143

Query: 102  QEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + +++        +L A  +SCG GLNL    N        W+        E   + R  
Sbjct: 1144 ELFHDATQPASPRVLLATTSSCGVGLNLT-CANHCFLMEPSWNPGT-----EEQALNRIH 1197

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            + G  + V +  LIA  TI++ + Q    K  + 
Sbjct: 1198 RIGQTKPVTITKLIADGTIEQNISQLCERKRALS 1231


>gi|145551825|ref|XP_001461589.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429424|emb|CAK94216.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1225

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
               ++   F  +    Q          ++           I  L     +   GLNL   
Sbjct: 1081 MIRLLEEKFQEEQIWCQVVTGAMSVEQRNKVIQSFEQHPSITALILSLRATSTGLNLT-M 1139

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             N +     WW+       IE   + R  + G K+ V V   +  NTI+E +    + K 
Sbjct: 1140 ANHVFLVDPWWNPA-----IEDQAIGRADRIGQKKQVNVIRFLCANTIEEKINLLHQKKK 1194

Query: 189  TIQDLLLNALKKE 201
             +   ++   +K+
Sbjct: 1195 KMIRKVIANEQKK 1207


>gi|57651290|ref|YP_185255.1| hypothetical protein SACOL0363 [Staphylococcus aureus subsp. aureus
           COL]
 gi|57285476|gb|AAW37570.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
          Length = 116

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               + WN G I LL AHPAS GHGLNLQ GG+I+V+F L W LE +Q         R  
Sbjct: 13  KAKERRWNSGDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQ-----QANARLY 67

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G      +++++  NTID+ V + L+ K   Q+ L+ A+K   
Sbjct: 68  RQGQNHTTIIHHIMTDNTIDQRVYKALQNKELTQEELMKAIKARI 112


>gi|327538790|gb|EGF25438.1| SNF2 family helicase [Rhodopirellula baltica WH47]
          Length = 914

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 31/202 (15%)

Query: 19  NIEAFNSASKTVKCLQ---------LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            I A    ++  +              +     D+E        E++  L   +      
Sbjct: 591 QIAAKKFMTEMDRLRMQKCLLMARMACDSTYLLDQEADEYSSKLERLGELLEGLIADPTR 650

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI-QEWNEGKIPLLFAHPAS 118
            I++   +   L R++    Q               K    + +  N+ +  ++     +
Sbjct: 651 KIVLFSEWRRMLTRIENRLDQIGCDYVRLDGQVPQKKRAAIVSRFQNDPECRVINMT-NA 709

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---- 174
              GLNLQ   N ++   L W+    +Q I R       + G +  V VY L+  +    
Sbjct: 710 GSTGLNLQA-ANTVINVDLPWNPAVLEQRIAR-----AYRMGQENPVHVYKLVTTSEPTP 763

Query: 175 TIDELVLQRLRTKSTIQDLLLN 196
           TI+E +L  L +K  + D  LN
Sbjct: 764 TIEEGLLTTLASKQDLADASLN 785


>gi|308489133|ref|XP_003106760.1| CRE-CSB-1 protein [Caenorhabditis remanei]
 gi|308253414|gb|EFO97366.1| CRE-CSB-1 protein [Caenorhabditis remanei]
          Length = 918

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 42/205 (20%)

Query: 35  LANGAVYYDE-----EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
           + N    Y        K  +  H  K+     + ++    P      F      +     
Sbjct: 440 ICNHPGLYRGAIPGSSKFGEIKHSGKVAMTFKLFDEWFKDPKNRVIFFTQRRKVVSMMEY 499

Query: 90  Q----------------------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
                                          T    P  I+++  +  I +      + G
Sbjct: 500 FLDQNRYELVTYFRRMKKNSRIRHASLTGSTTAAARPKIIKKFEEDTDIKVFLMTTRAGG 559

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N ++ F   W+ +      +     R  + G +  V +  LI+  T+++  
Sbjct: 560 LGLNLT-CANKVIIFDPDWNPQA-----DNQAKNRIYRMGQENDVSIVRLISNGTLEDRK 613

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
             +   K  +   LL+    +  HV
Sbjct: 614 FFKQVQKEMLAAQLLH--NADVEHV 636


>gi|50954487|ref|YP_061775.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950969|gb|AAT88670.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 721

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 22/202 (10%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALEV 61
           +   +   +         N  +   K  Q    L++           K V   K   +  
Sbjct: 517 RLVAQSELEESKSAKTGDNVFTMVRKIGQAKAGLSSDYTAQLARSVGKVVFFAKHIDVMD 576

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
             E A AA  +       D                    I  +N +  + +      + G
Sbjct: 577 AAEAAFAARDLTTVSIRGDQRAAV-----------RQKEIDAFNTDPGVSVAVCSLTAAG 625

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N+++    W   E+         + R  + G +  V  + +IA  TID  +
Sbjct: 626 VGLNLQAASNVVLAELSWTAAEQT------QAIDRVHRIGQEEPVTAWRIIAAQTIDSKI 679

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + +  K  +    L+    E 
Sbjct: 680 AELIDAKQGLAARALDGSDVEM 701


>gi|212638494|ref|YP_002315014.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
 gi|212559974|gb|ACJ33029.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
          Length = 349

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 27/200 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y   Q++   + +   I               AN                +K+     
Sbjct: 165 REYKIIQKDRVLETKDGKIAFDTIMKLQHGLRYYAN--------------QKDKLSYT-E 209

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI------QEWNEGKIPLLFAH 115
           ++ +     I++ Y++  +   L     + +T+ +    +      ++W+  K  +    
Sbjct: 210 MLAEGTEENIVIFYYYQQEKEDLMNLLGKSKTIYEVSGKVNKLPDREKWSNLKNTVTLVQ 269

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+ LQY  NI++F++  +  +++        + R  + G  + V VY  I +N+
Sbjct: 270 YQAGAAGIELQY-ANIVIFYTPTYSYQDYD-----QALGRCYRNGQTKKVTVYRYITKNS 323

Query: 176 IDELVLQRLRTKSTIQDLLL 195
           I+E V + L  K    + L 
Sbjct: 324 IEEAVYEALAAKKDFTEELF 343


>gi|224004070|ref|XP_002295686.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585718|gb|ACI64403.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 338

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 62/209 (29%), Gaps = 39/209 (18%)

Query: 2   KQYHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------- 51
           + Y     +    L    + ++  +  +  ++  +  N        +    +        
Sbjct: 134 QYYRALYEKNLKFLHRGKKPLDGPSINNLAMQLRKCCNHPFLLTGVESEVRLQQPNKEIV 193

Query: 52  -----HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA----------FPQGRTL 94
                   K+  L+ ++   KA+   I++   F   L  ++                 T 
Sbjct: 194 DLMVEASGKLVLLDKLLPRLKADGHRILLFSQFKIMLDLIEDYLILRGFKSERIDGSITG 253

Query: 95  DKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            K    I  +            ++     + G G+NL    +  + F   W+ +      
Sbjct: 254 LKRQAAIDRYQSKGDNGRENPFIMLLSTRAGGVGINLTA-ADTCIIFDSDWNPQN----- 307

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +     R  + G  + V +Y L+ + T +
Sbjct: 308 DLQAQARCHRIGQTKNVKIYRLLTRKTYE 336


>gi|328554198|gb|AEB24690.1| RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens TA208]
 gi|328912591|gb|AEB64187.1| putative RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens LL3]
          Length = 556

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 23/201 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   ++     L  +  +A        A+   +  Q+          K  + V   +  
Sbjct: 321 VYMTLKK----MLDQKEQKAPAFDEQTIANLMDRINQVT------QNSKAIQVVDLIQKI 370

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             +VII     A  I    F          F  G    K       +  GK+ +L A   
Sbjct: 371 NDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-E 428

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++
Sbjct: 429 AGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVE 482

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E +L+ L  K  + + ++  L
Sbjct: 483 EHILKLLYDKIHLFENVVGEL 503


>gi|307106103|gb|EFN54350.1| hypothetical protein CHLNCDRAFT_135608 [Chlorella variabilis]
          Length = 877

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 45/194 (23%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
             A+   +  Q                       A         A   +V   F S L  
Sbjct: 703 KVAALLERLRQ-----------------DAAATAAGAAAGAGGGAVKSVVFSQFTSYLDL 745

Query: 84  LQK----------AFPQGRTLDKDPCTIQEWNEGKIP---LLFAHPASCGHGLNLQYGGN 130
           ++                 +  +    ++ +         +L     + G GLNL    +
Sbjct: 746 VEAALAGEGFVTGRLDGKTSAKRRGEVLRAFQSSSASSPTVLLVSLKAGGVGLNLTA-AS 804

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +     WW+    +Q ++R+    Q +               ++I+E +L     K  +
Sbjct: 805 RVHLLDPWWNPSVEEQAMDRVHRLGQTR--------------ADSIEERMLALQEQKRDL 850

Query: 191 QDLLLNALKKETIH 204
             +  +  K E I 
Sbjct: 851 MRVAFDRRKAEDIR 864


>gi|295706576|ref|YP_003599651.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294804235|gb|ADF41301.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 557

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 72/196 (36%), Gaps = 13/196 (6%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y   +  L       +    +  +  ++ LQ        ++     +  D+K+     I
Sbjct: 322 VYMTLKNMLERQEDPNSALTEHMITPLMELLQQVPQNAKAEKVLELVQKIDDKV-----I 376

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I     A  +    +          F  G    K     Q +      +  A   + G G
Sbjct: 377 IFTEYRATQLYLQWYLKQHGITSVPFRGGFKRGKKDWMKQLFES-HAQVFIAT-EAGGEG 434

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ+  + ++ + L W+    +Q I R+      + G K  V +Y L  Q+T++E +L+
Sbjct: 435 INLQF-CHHIINYDLPWNPMRLEQRIGRV-----HRLGQKHDVHIYNLAIQHTVEEHILK 488

Query: 183 RLRTKSTIQDLLLNAL 198
            L  K  + + ++  L
Sbjct: 489 LLYEKINLFERVVGEL 504


>gi|115903652|ref|XP_794091.2| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
 gi|115972944|ref|XP_001188944.1| PREDICTED: similar to Brg1 [Strongylocentrotus purpuratus]
          Length = 1736

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 12/169 (7%)

Query: 35   LANGAVYYDEEKHWKEV----HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            + +G   Y     ++ +       K     +++       + +   F             
Sbjct: 1132 IISGPDLYRVGGKFELLDRILPKLKALGHRILLFCQMTTLMTILEDFFVYRGFKYLRLDG 1191

Query: 91   GRTLDKDPCTIQEWNEGKIPLLF--AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                D     +Q +NE   P         + G GLNLQ   + ++ F   W+  +     
Sbjct: 1192 TTKADDRGILLQTFNEANCPYFIFMLSTRAGGLGLNLQT-ADTVILFDSDWNPHQ----- 1245

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +     R  + G    V V  L+   +++E +L   R K  +   ++ A
Sbjct: 1246 DLQAQDRAHRIGQVNEVRVLRLMTVQSVEEKILAAARWKMNMDSKIIQA 1294


>gi|116196398|ref|XP_001224011.1| hypothetical protein CHGG_04797 [Chaetomium globosum CBS 148.51]
 gi|88180710|gb|EAQ88178.1| hypothetical protein CHGG_04797 [Chaetomium globosum CBS 148.51]
          Length = 1110

 Score = 71.7 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 62   IIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK-IP 110
            +         +V   + S L                     T       +  + +   + 
Sbjct: 945  LYPDEPPFKSVVFSGWTSHLDLIQIALDNAGITYTRLDGKMTRTARNAAMDAFRDDHSVQ 1004

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            ++     + G GLNL   GN +      ++     Q ++R+      + G  RAV     
Sbjct: 1005 VILVSIMAGGLGLNLTA-GNSVYVMEPQFNPAAEAQAVDRV-----HRLGQTRAVRTVRF 1058

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            I +++ +E +LQ    K  +  L ++    + I
Sbjct: 1059 IMKDSFEEKMLQLQDKKKKLASLSMDRDPNDRI 1091


>gi|321265706|ref|XP_003197569.1| helicase domain DNA excision repair protein (Rad26L) [Cryptococcus
           gattii WM276]
 gi|317464049|gb|ADV25782.1| Helicase domain DNA excision repair protein (Rad26L), putative
           [Cryptococcus gattii WM276]
          Length = 1016

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 96  KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    I  + + +    ++     + G GLNL    N +V F   W             +
Sbjct: 676 ERQEMIDRFQDREKDHFIMLISTRAGGVGLNLTA-ANKVVIFDPSW------------TM 722

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            R  + G KR V VY LI Q TI+EL+ +R   K      L
Sbjct: 723 DRAFRIGQKRTVEVYRLIGQGTIEELIYERQVQKQQSARQL 763


>gi|18606158|gb|AAH22975.1| Smarca2 protein [Mus musculus]
          Length = 495

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++++NE      +      + G GLNLQ   + +V F   W+  +     +   
Sbjct: 26  EDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQA-ADTVVIFDSDWNPHQ-----DLQA 79

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 80  QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 124


>gi|209489463|gb|ACI49222.1| hypothetical protein Csp3_JD05.007 [Caenorhabditis sp. PS1010]
          Length = 1195

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 96  KDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           K       +N+    +  L+     +   G N+    N +V F   W+        +   
Sbjct: 855 KRDAVQTHFNDADNHRARLMLISTRAGSLGTNMVS-ANRVVIFDACWNPSH-----DTQS 908

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 909 LFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 953


>gi|66812928|ref|XP_640643.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
 gi|60468538|gb|EAL66541.1| SNF2-related domain-containing protein [Dictyostelium discoideum
           AX4]
          Length = 1021

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +++       N+    +      + G GL L      ++F  L W              
Sbjct: 688 QNRNDYVNDFQNDPNCRVAVLSITAAGTGLTLTA-ATCVIFAELSWTPGVLF-----QAE 741

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R  + G   +V V YLIA  T+DE++   + +K T+   +L+    ++++
Sbjct: 742 DRAHRYGQTSSVLVQYLIALGTVDEMIWSLVESKKTLLGRVLDDEDGQSLN 792


>gi|145607271|ref|XP_361651.2| hypothetical protein MGG_12155 [Magnaporthe oryzae 70-15]
 gi|145014859|gb|EDJ99427.1| hypothetical protein MGG_12155 [Magnaporthe oryzae 70-15]
          Length = 1430

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 22/186 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SD 80
            K L++ +     D+              +   + K     II+  H+             
Sbjct: 1043 KFLEICD--RTPDKPVTPSAKTTAIKMQVLEWLHKYPDDKIIIFTHWVPLARILGRVFEA 1100

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFS 136
                   +     + +    ++++          LL A     G  LNL    N ++   
Sbjct: 1101 EKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIASSRCGGQALNLTA-ANRVILVD 1159

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            LWW+       +ER    R  + G  +  +   ++ + TIDE +L     K       L 
Sbjct: 1160 LWWNTA-----VERQAFGRVHRIGQTKDTYYVKIVTRKTIDERLLDMQDEKDAKISNTLQ 1214

Query: 197  ALKKET 202
              + + 
Sbjct: 1215 DGEHKV 1220


>gi|75764646|ref|ZP_00744080.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74487868|gb|EAO51650.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 340

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 20/203 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y++F++    ++  E +     A+K +   QLA               ++ K++ ++ 
Sbjct: 156 KMYNEFKKHHIIEIGEELLIGDTPAAKKLYLRQLAGSY------------NEHKLQYIKD 203

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +IE  N   II        +A +        T++ D   +  + +    +      +   
Sbjct: 204 LIESTNDRIIIFYNFKKEYMALVDLIERPIATINGDIKDLSAYEKHDNSVTLIQYQAGAM 263

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ    I+ F             +      R  + G KR  F YYL+   +I+  +L
Sbjct: 264 GLNLQKANKIVYFTLTDKS------ELFEQSKKRTLRIGQKRLGFYYYLLTDGSIEWRML 317

Query: 182 QRLRTKSTIQDLLLNALKKETIH 204
             L+ +    D L    K+E ++
Sbjct: 318 DVLKERRDYTDALFE--KEEDVN 338


>gi|308174252|ref|YP_003920957.1| RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607116|emb|CBI43487.1| putative RNA polymerase-associated helicase protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 617

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 23/201 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
            Y   ++     L  +  +A        A+   +  Q+          K  + V   +  
Sbjct: 382 VYMTLKK----MLDQKEQKAPAFDEQTIANLMDRINQVT------QNSKAIQVVDLIQKI 431

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             +VII     A  I    F          F  G    K       +  GK+ +L A   
Sbjct: 432 NDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-E 489

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +  ++T++
Sbjct: 490 AGGEGINLQF-CNHIINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATKHTVE 543

Query: 178 ELVLQRLRTKSTIQDLLLNAL 198
           E +L+ L  K  + + ++  L
Sbjct: 544 EHILKLLYDKIHLFENVVGEL 564


>gi|326678432|ref|XP_002666261.2| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Danio rerio]
          Length = 607

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEW- 104
           +K    ++ ++     +V  H  S L                        +    +  + 
Sbjct: 23  VKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQLVHRFQ 82

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +      + G GL      + +VF  L+W+         +    R  + G    
Sbjct: 83  NDPDTRVAVLSIQAAGQGLTFTA-ASHVVFAELYWNPGHI-----KQAEDRAHRIGQTAT 136

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V ++YLIA+ T D ++   L  K T+    LN  K+
Sbjct: 137 VHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKKE 172


>gi|167462178|ref|ZP_02327267.1| SNF2-related protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 421

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 22/202 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           KQY +FQ+    ++ G+ +    + +K +   QLA               + EK + L  
Sbjct: 237 KQYREFQKHRMIEIDGKTLVGDTTLTKMLYLRQLAG------------MYNPEKPERLRE 284

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFP----QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E  +   +IV Y+F ++   +Q            ++ D   +  + E    +      
Sbjct: 285 LLESTSD-RVIVFYNFRAEFEVIQNLCQTLERPLSMINGDGRDLTAYLERDDSVTAVQFQ 343

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S   G NLQ      V+ S   D    +Q + RI    Q         F YYL+ + +I+
Sbjct: 344 SGALGENLQ-LAKHAVYMSPPLDSILFEQSLARIRRIGQ----QSDTCFYYYLVTKGSIE 398

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
           E + + L+ +      L   L+
Sbjct: 399 EHIYETLKKRKDFTQYLFEELE 420


>gi|154315820|ref|XP_001557232.1| hypothetical protein BC1G_04482 [Botryotinia fuckeliana B05.10]
 gi|150846878|gb|EDN22071.1| hypothetical protein BC1G_04482 [Botryotinia fuckeliana B05.10]
          Length = 1660

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLW 138
           L    K      +  +    I  +N     L        + G G+NL    + ++     
Sbjct: 734 LQLPFKRLDGTVSTLEKQKRIDAFNAPNSELFAFLLSTRAGGVGINL-ATADTVIIMDPD 792

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           ++  +     +   ++R  + G K+ V V+ L+ +++ +E ++Q  R K  +   L+ ++
Sbjct: 793 FNPHQ-----DIQALSRAHRIGQKKKVLVFQLVTKDSAEEQIVQVGRKKMALDQALIESI 847


>gi|47226328|emb|CAG09296.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 671

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 35/219 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNS----------ASKTVKCLQLANGAVYYDEEKHWKEVH-- 52
            + + ++   L  +  +              A+ +    QLA G     EEK    V   
Sbjct: 449 RRLKSDVLSQLPAKQRKVVTVTIDGINSRIKAALSAAAKQLAKGHPNKKEEKEALLVFYN 508

Query: 53  ---DEKIKALEVIIE---KANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDK 96
              + K++A+   I    +      +V  H    L  +                     +
Sbjct: 509 HTAEAKLQAIMEYITDMLEGGREKFLVFAHHKLVLDHITAELEKKNVVYIRIDGSTPSAE 568

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                +++       +      +   GL L    ++++F  L+W+              R
Sbjct: 569 RQQLCEKFQFSSSSCVAVLSITAANMGLTLHS-ADLVIFAELFWNPGVLI-----QAEDR 622

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G    V ++YL+A+ + D+ +   ++ K  + + +
Sbjct: 623 VHRIGQTNNVNIHYLVAKGSADDHLWPLIQEKMNVLEQV 661


>gi|41052581|dbj|BAD07923.1| SNF2 domain/helicase domain-containing protein-like [Oryza sativa
            Japonica Group]
 gi|41052776|dbj|BAD07645.1| SNF2 domain/helicase domain-containing protein-like [Oryza sativa
            Japonica Group]
 gi|222622037|gb|EEE56169.1| hypothetical protein OsJ_05089 [Oryza sativa Japonica Group]
          Length = 2200

 Score = 71.3 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 60/231 (25%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSD 80
            K ++  ++ N  +      ++           K+  L+ I+ K +     +++       
Sbjct: 1262 KCMELRKVCNHPLLSYPFMNYYGKDFIIRSCGKLWNLDRILIKLHRSGHRVLLFSTMTKL 1321

Query: 81   LARLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYG 128
            L  L++     + + +              I ++N       +      + G GLNLQ  
Sbjct: 1322 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSIRAAGRGLNLQS- 1380

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--------------- 173
             + +V +    + +      E   V R  + G  R V V Y+ A                
Sbjct: 1381 ADTVVIYDPDPNPQN-----EEQAVARAHRIGQTRDVKVIYMEAVVDNISSYQKEDELRN 1435

Query: 174  -----------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                              +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1436 GGSGDLEDDLAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTH 1486


>gi|317149017|ref|XP_001823066.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1364

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 48   WKEVHDEKIKALEVIIEKANAAPIIVAYHFN-SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
               + DE I+A + I+  +++ P +           R          +       + +N 
Sbjct: 957  MNSIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNL 1016

Query: 107  G-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +  +      + G GLN+    N ++ F   +       + E   V R  + G ++ V
Sbjct: 1017 GSEKQVYLISTRAGGLGLNI-PVANRVIIFDFKFSP-----VWEEQAVGRAYRLGQQKPV 1070

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FVY  IA  T +E++  +   K+ +   +++
Sbjct: 1071 FVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD 1101


>gi|296809774|ref|XP_002845225.1| DNA repair protein rad5 [Arthroderma otae CBS 113480]
 gi|238842613|gb|EEQ32275.1| DNA repair protein rad5 [Arthroderma otae CBS 113480]
          Length = 1178

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    N +     WW        +E   + R  + G  R V 
Sbjct: 1071 PPANVLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVK 1124

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V   + +N+I+  +L+    K  I   L
Sbjct: 1125 VSRFVVKNSIEGRILRIQERKMMIAGSL 1152


>gi|49257012|dbj|BAD24804.1| lymphoid specific helicase variant9 [Homo sapiens]
          Length = 809

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 36/180 (20%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             S L  L                ++++N                  ++ Y        S
Sbjct: 624 MTSMLDILMDYCH-----------LRDFN------------FSRLDGSMSYSEREKNMHS 660

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              D E +    +     R  + G  + V VY L+  NTID+ +++R   K  ++ L+++
Sbjct: 661 FNTDPEVN-PQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIH 719


>gi|319651521|ref|ZP_08005649.1| DNA/RNA helicase protein [Bacillus sp. 2_A_57_CT2]
 gi|317396836|gb|EFV77546.1| DNA/RNA helicase protein [Bacillus sp. 2_A_57_CT2]
          Length = 562

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
           + K +    II+  N   +I+   + +    LQ            F  G    K     +
Sbjct: 358 NSKAQKALEIIQNIND-KVIIFTEYRATQMYLQWFLKQYGITSVPFRGGFKRGKKDWMRE 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + +    +L A   + G G+NLQ+  N ++ F L W+    +Q I RI      + G +
Sbjct: 417 LFQK-NAQVLIAT-EAGGEGINLQF-CNHIINFDLPWNPMRLEQRIGRI-----HRLGQE 468

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           + V +Y    ++T++E V++ L  K  + + ++  L
Sbjct: 469 KDVMIYNFATKDTVEEHVMKLLYEKIHLFEKVIGDL 504


>gi|302392306|ref|YP_003828126.1| helicase domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204383|gb|ADL13061.1| helicase domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 500

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 53  DEKIKALEVIIEKANAAP-----------IIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
           ++K++ +E ++++ +               I  Y +   L  ++       T  +     
Sbjct: 313 NQKVQVVEELLKEIDGQAVIFTEYLATQNYICYYLYQRGLMPVKFDGTLNDTQKERA--- 369

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +   +  +L    A+   G+NLQ+  N+++ + L W+  + +Q I R+      + G 
Sbjct: 370 KRFFAEQGDVLV-STAAGRQGINLQF-CNVIINYDLPWNPMKLEQRIGRV-----HRLGQ 422

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              V +Y L  + TI+E ++  L  K  + + ++  L K
Sbjct: 423 TEEVKIYNLCTKGTIEEKIVNVLHDKINLFESVVGNLDK 461


>gi|28278071|gb|AAH39796.1| Hltf protein [Mus musculus]
          Length = 163

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 19/150 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNE---GKIPL 111
           K      +V   F + L+ ++                    K   +IQ +     G   +
Sbjct: 2   KDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTI 61

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     + G GLNL    + +      W+     Q  +R       + G K+ V +   I
Sbjct: 62  MLLSLKAGGVGLNLCA-ASRVFLMDPAWNPAAEDQCFDRC-----HRLGQKQEVIITKFI 115

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +++++E +L+   TK  +        K +
Sbjct: 116 VKDSVEENMLKIQNTKRDLAAGAFGTKKTD 145


>gi|296812409|ref|XP_002846542.1| transcription termination factor 2 [Arthroderma otae CBS 113480]
 gi|238841798|gb|EEQ31460.1| transcription termination factor 2 [Arthroderma otae CBS 113480]
          Length = 1166

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 26/185 (14%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARL-----------QK 86
            +Y       K +    +   E   +  +      ++   + S L  +             
Sbjct: 981  LYEGPHTKTKALISSLLDTAEENKKSPHEPPIKSVIFSSWTSHLDLIEVALEENGLTGYA 1040

Query: 87   AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +L +    I+ +  +  + +L     + G GLNL   G+++      ++     
Sbjct: 1041 RLDGTMSLKQRNSAIETFSKDDDVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPATIA 1099

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN------ALK 199
            Q I+R+      + G  R V     I +++I+E + +  + K  + D+ LN       ++
Sbjct: 1100 QAIDRV-----HRIGQTREVTTIQYIMKDSIEEKITELAKRKQRLADMSLNRKMDRREMQ 1154

Query: 200  KETIH 204
            KE + 
Sbjct: 1155 KERLE 1159


>gi|328847835|gb|EGF97150.1| hypothetical protein MELLADRAFT_87579 [Melampsora larici-populina
           98AG31]
          Length = 220

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 7/157 (4%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
            Y   +   K+V   K    + +I       +               +     T  +   
Sbjct: 34  AYLVSQLKNKQVPLHKGLCKKTVIYTQWRCFMEWIKIGLDCHGIESGSLHGEMTPQERTL 93

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   I        + G GLN+    + +      W+ +  QQ I+R+      +
Sbjct: 94  QLNRFQNNNNIEAFIVSIEAGGVGLNMT-CADEVYLMDAHWNPQIVQQAIDRL-----HR 147

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G    V VY+++A  ++++ +    + K+++   ++
Sbjct: 148 IGQTHPVKVYHVVAGGSVEQHLFNVQKKKASLARKVI 184


>gi|70953048|ref|XP_745650.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526041|emb|CAH75841.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 1029

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                 +           +    I+E+     + +      + G GLNL    N ++   
Sbjct: 872 KRTQNNIYVRLDGSTNTIERQQIIKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMD 930

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             W+        +R    R  + G K+ V++Y L  +NTI+E VL+  + K  +   
Sbjct: 931 QDWNP-----HNDRQAEDRVHRLGQKKEVYIYRLCCKNTIEETVLKCCKAKLHLDQA 982


>gi|302851167|ref|XP_002957108.1| hypothetical protein VOLCADRAFT_107529 [Volvox carteri f.
            nagariensis]
 gi|300257515|gb|EFJ41762.1| hypothetical protein VOLCADRAFT_107529 [Volvox carteri f.
            nagariensis]
          Length = 1252

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 17/192 (8%)

Query: 3    QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             Y + Q +    +    +     +     ++  Q  +                      +
Sbjct: 845  LYTQSQAQFGAYVDSGTLLNNYAHIFDLLIRLRQAVDHPYLVIYSATNNPATAAPAAVND 904

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               E  +          N+                      +E  +G +       A+CG
Sbjct: 905  NGGESGDGNAPSPDAVINTGAYGGCGGGMAIPICG---LCHEEIEDGVV-------AACG 954

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            HG       + ++    WW+    QQ  +RI      + G  + + V   +   TI+E +
Sbjct: 955  HGFCRTCVIDHVMLMDPWWNPAVEQQAQDRI-----HRLGQYKPITVVRFVIAGTIEERI 1009

Query: 181  LQRLRTKSTIQD 192
            L+    K  + +
Sbjct: 1010 LKLQEKKQLVFE 1021


>gi|119715910|ref|YP_922875.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119536571|gb|ABL81188.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 723

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F +   R         T  +        N+ ++ ++     + G G+NLQ   N+++   
Sbjct: 575 FAARGLRYSSIRGDQTTAVRQRNIDAFVNDPEVAVIVCSLTAAGVGVNLQVASNVVLAEL 634

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W D E+         + R  + G +  V  + +IA  TID  V + + +K+ +  + L+
Sbjct: 635 SWTDAEQT------QAIDRVHRIGQEEPVTAWRIIASQTIDTRVAELIDSKAGLAAVALD 688

Query: 197 ALKKET 202
              +E 
Sbjct: 689 GSDEEI 694


>gi|322788045|gb|EFZ13883.1| hypothetical protein SINV_02167 [Solenopsis invicta]
          Length = 159

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNL 125
              IV   F  +            T+ +   TI ++N   +    +        G G+NL
Sbjct: 1   MIHIVESLFQCE-GYTYLRMDGTTTMSQRQQTIHKFNNVHDTSYFVFLLTTRVGGLGVNL 59

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             G N ++ +   W+        +     R  + G  + V  Y LI   TI+E       
Sbjct: 60  T-GANRVIIYDPDWNPAT-----DAQAKERAWRIGQNKQV--YRLITAGTIEE------- 104

Query: 186 TKSTIQDLLLNALKKETI 203
            K  + + +L+ L +  +
Sbjct: 105 -KLLLSNKVLDVLNQRRL 121


>gi|302413912|ref|XP_003004788.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
 gi|261355857|gb|EEY18285.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
          Length = 868

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +     +  +   I ++     +   GLNL   GN +      ++     Q ++R
Sbjct: 745 MSRNARTKAMDEFRDNPSIHVILVSIMAGSLGLNLTS-GNNVYVMEPQYNPAAEAQAVDR 803

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +      + G KR V     I +N+ +E +++    K  +  L ++ 
Sbjct: 804 V-----HRLGQKRPVQTVRYIMRNSFEEKMIELQDKKKKLASLSMDG 845


>gi|309355669|emb|CAP38453.2| CBR-RAD-26 protein [Caenorhabditis briggsae AF16]
          Length = 1340

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 24/194 (12%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI---KALEVIIEK 65
            +E   +   + + A     ++ K                   +  + +     LE I+ K
Sbjct: 836  QEGVLENGYKIVVALEILDESTK-------------IGEKILIFSQNLTALDMLEEILRK 882

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
                    + H              G T        I  +N E  + L      +   G+
Sbjct: 883  RQVVKKEKSEHQERWEKNRNYLRLDGTTSGADREKLINRFNSEPGLHLFLISTRAGSLGI 942

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            NL    N  +     W+        +   V R  + G ++  FVY LI  N+++  +  R
Sbjct: 943  NLVS-ANRCIIIDACWNP-----CHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNR 996

Query: 184  LRTKSTIQDLLLNA 197
              +K  +Q  +++ 
Sbjct: 997  QISKHGLQQRVVDD 1010


>gi|325191520|emb|CCA25894.1| PREDICTED: similar to SNF2 domaincontaining protein [Albugo
           laibachii Nc14]
          Length = 966

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEW 104
            + L+++  +  +   IV   F + L  +Q     G               +D       
Sbjct: 801 FQELDMMKTRDPSGKAIVFSQFVNMLDLIQFRLKLGGIPCVTLSGNMSMDARDRILESFR 860

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           ++  +  L     + G  LNL    + +     WW+     Q I+R       + G  + 
Sbjct: 861 SDVNVTTLLISLKAGGVALNLT-IASHIFLMDPWWNPAAESQAIDR-----THRLGQFKP 914

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +   + I   +I++ +LQ    K  I D  +  
Sbjct: 915 IQATHFIIAGSIEDRILQLQDKKRLIFDATVGG 947


>gi|149184879|ref|ZP_01863196.1| SNF2 family helicase [Erythrobacter sp. SD-21]
 gi|148830990|gb|EDL49424.1| SNF2 family helicase [Erythrobacter sp. SD-21]
          Length = 556

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 34/214 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY------------DEEKHWKEVHDEKI 56
            E+  +   +   A N    T +                               +   K+
Sbjct: 328 DEVLAETLEKYPVAGN-LVATGQLQLFCAHPWLQGSGDPERDQDAGINPSAGMPLFTPKV 386

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQ 102
           +    I+E+   +   +++   FN     L++A               G   ++    + 
Sbjct: 387 ERAIAILEEAFRSGRKVLIFAIFNRCGEILREAAQGRLPDAYWGAINGGTPQEERQAIVD 446

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            ++    P  L  +P + G GLN+     +++ F+  W+        E     R  + G 
Sbjct: 447 AFSCHDGPGCLVLNPKAAGAGLNITA-ATVVIHFTQAWNPAL-----ESQASARAHRRGQ 500

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              V++Y L  ++T++ +++ R + +  + +  +
Sbjct: 501 TEPVYIYRLFYEDTVERVMIDRSQWRRELGNEAV 534


>gi|114680096|ref|YP_758509.1| global transactivator [Plutella xylostella multiple
           nucleopolyhedrovirus]
 gi|91982160|gb|ABE68428.1| global transactivator [Plutella xylostella multiple
           nucleopolyhedrovirus]
          Length = 506

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 32/201 (15%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKANAAPI 71
            +     +K  Q+          K+  E +D                    I   +   I
Sbjct: 298 QHVLWLILKLRQICCHPYLAMHCKNILETNDCFKMDYMSSKCKRVLDLVDDILNTSDDKI 357

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG---KIPLLFAHPAS 118
           I+   +   L   +  F Q             ++        +N+    +  +L      
Sbjct: 358 ILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKC 417

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTI 176
            G GLNL  GGN +V     W+ +     IE     R  + G  +  +VY +  +  N+I
Sbjct: 418 GGVGLNL-IGGNHIVMLEPHWNPQ-----IELQAQDRISRMGQTKNTYVYKMLNVEDNSI 471

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ + QR   K    + +   
Sbjct: 472 EKYIKQRQDKKIAFVNTVFEE 492


>gi|290343601|ref|YP_003494968.1| hypothetical protein OTV1_129 [Ostreococcus tauri virus 1]
 gi|260161016|emb|CAY39717.1| hypothetical protein OTV1_129 [Ostreococcus tauri virus 1]
          Length = 483

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 34/228 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFN-------SASKTVKCLQLANGAVYYDE--------EK 46
           + Y    ++    ++     A +            ++  Q       Y +        + 
Sbjct: 239 RLYEFVFQDAQETIRDAFKNAISLNSKNMVILEALLRARQTMIWPQMYLDGIAKQNGTQP 298

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------RTLDKDP 98
                   K++ L  +I+       +V   F  ++  +Q+                ++D 
Sbjct: 299 EQWVGRSNKMETLFRMIKSHPDEKTLVFCQFKGEMDYIQRNLECPTFRIDGSVPKEERDN 358

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                       +      S G GLNLQ     +      W+            + R  +
Sbjct: 359 QVNAFKKAPPGAVFIIQIKSGGQGLNLQE-ATRVYITGPSWNPATEL-----QAIGRAHR 412

Query: 159 AGFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V+V  LI +      +++E +L     KS +   +LN  + E
Sbjct: 413 TGQSKPVYVKKLIYKEGDAFISVEEEILALQGHKSIVCSKVLNDERIE 460


>gi|319945477|ref|ZP_08019737.1| helicase [Lautropia mirabilis ATCC 51599]
 gi|319741263|gb|EFV93690.1| helicase [Lautropia mirabilis ATCC 51599]
          Length = 1109

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 36/225 (16%)

Query: 3    QYHKFQRELYCDLQG-ENIEAFNSASKTVKCLQLANGAVYYDEEK---HWKEVHDEKIKA 58
             Y +         +G       N          L      ++ +       +V+  K   
Sbjct: 870  LYSQTLEGYRASREGLGKSPFKNQLGVLHYLRLLCTDPQEFNMKGSQRDRLDVYRAKAPK 929

Query: 59   LEVII-----EKANAAPIIVAYHFNSDLARLQKAFPQ----------------GRTLDKD 97
            ++ ++      +     +IV   F      LQ                      R +D  
Sbjct: 930  MDWLLTQLKRIQRWNEKVIVFCEFREVQRLLQSCIEVELGYSATIINGDTSASSRNVDSR 989

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ + E     +L   P + G G+N+Q   N +V +   W+  +     E     R 
Sbjct: 990  QKRIRAFQEKPGFGVLILSPVAVGFGVNIQA-ANHVVHYMRTWNPAK-----EDQATDRA 1043

Query: 157  RQAGFKRAVFVYYL-IAQN---TIDELVLQRLRTKSTIQDLLLNA 197
             + G  + V VYY  +A +   T D  + Q L  K  +   +LN 
Sbjct: 1044 YRIGQTKDVHVYYPTVAADDFVTFDVRLDQLLTKKRELAGDMLNG 1088


>gi|297301538|ref|XP_001094310.2| PREDICTED: lymphoid-specific helicase isoform 3 [Macaca mulatta]
          Length = 808

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 36/180 (20%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             S L  L                ++++N                  ++ Y        S
Sbjct: 623 MTSMLDILMDYCH-----------LRDFN------------FSRLDGSMSYSEREKNMHS 659

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              D E +    +     R  + G  + V VY L+  NT+D+ +++R   K  ++ L+++
Sbjct: 660 FNMDPEVN-PQSDLQAQDRCHRIGQTKPVVVYRLVTANTVDQKIVERAAAKRKLEKLIIH 718


>gi|269796315|ref|YP_003315770.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098500|gb|ACZ22936.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 741

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 21/158 (13%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDP 98
             K+  L  I+E    +   ++V  +F   +  +++                G   +   
Sbjct: 547 SSKLGRLLEILEDAAESGEKVVVFSYFRDVVDLVRRTVAETRPDAVYGPLWGGVAAEDRQ 606

Query: 99  CTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++       +L A   + G GLN+Q   N++V               E   V R R
Sbjct: 607 AAVDDFTAAPPGAVLVAQVDAGGVGLNIQA-ANVVVICEPQLKPTT-----EAQAVARVR 660

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G  R+V V+ L+ + ++DE + + L  KS + D  +
Sbjct: 661 RMGQVRSVRVHRLLVEGSVDERIRELLTAKSRVFDEYV 698


>gi|325117137|emb|CBZ52689.1| putative DNA excision repair protein [Neospora caninum Liverpool]
          Length = 1357

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 21/112 (18%)

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G  +      +  +  +  I  L       G GLNL                       +
Sbjct: 979  GVPVASRHAIVDRFQRDSSIFALLLTTRVGGVGLNLTAA--------------------D 1018

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            R+   R  + G  + V +Y L+   +++E V  R   K  +   +L   ++ 
Sbjct: 1019 RVARERSWRIGQSKDVCIYRLLTSGSMEEKVYHRQVFKFFLSQKVLQDPRQR 1070


>gi|160881051|ref|YP_001560019.1| SNF2-related protein [Clostridium phytofermentans ISDg]
 gi|160429717|gb|ABX43280.1| SNF2-related protein [Clostridium phytofermentans ISDg]
          Length = 660

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLL 112
           K      +  + N       Y     +   Q+              ++++     +  ++
Sbjct: 490 KNIHDLKLYLENNGIKCQELYG---AIPVEQEDMNSDNDTLTREKIVRDFQKENSEFKVI 546

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A+P +    ++L    +  ++    ++   + Q  +RI     +          YY+++
Sbjct: 547 IANPFAVAESISLHKSCHNAIYLERTFNAAHYMQSKDRIHRYGLKAGIETN---YYYILS 603

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           +++IDE++ +RL  K      ++ ++
Sbjct: 604 KDSIDEIIHERLNLKERRMTEIMESM 629


>gi|284029135|ref|YP_003379066.1| helicase domain-containing protein [Kribbella flavida DSM 17836]
 gi|283808428|gb|ADB30267.1| helicase domain protein [Kribbella flavida DSM 17836]
          Length = 708

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           ++      +    ++       I  + N+  + +      + G GLNLQ   N+++    
Sbjct: 567 AERGIRYCSIRGDQSSTARQKNIDAFVNDAGVAIAVCSLLTAGVGLNLQVASNVVLAELS 626

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W + E+         + R  + G +  V  + +IA  TID  +   +  K+ +  + L+ 
Sbjct: 627 WTNAEQT------QAIDRVHRIGQEEPVTAWRIIAAQTIDTRIADLIDAKAGLAAMALDG 680

Query: 198 LKKET 202
             +E 
Sbjct: 681 SDEEV 685


>gi|308468126|ref|XP_003096307.1| CRE-RAD-26 protein [Caenorhabditis remanei]
 gi|308243350|gb|EFO87302.1| CRE-RAD-26 protein [Caenorhabditis remanei]
          Length = 1304

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 56  IKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +  LE I+ K            +  +  R         +       I  +N E  + L  
Sbjct: 838 LDMLEEILRKRQINGKNGPGERW--EKNRNYLRLDGTTSGADREKLINRFNSEPGLHLFL 895

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+NL    N  +     W+        +   V R  + G ++  FVY LI  
Sbjct: 896 ISTRAGSLGINLVS-ANRCIIIDACWNP-----CHDAQAVCRVYRYGQQKKTFVYRLIMD 949

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
           N+++  +  R  +K  +Q  +++ 
Sbjct: 950 NSMERSIFNRQISKHGLQQRVVDD 973


>gi|260946986|ref|XP_002617790.1| hypothetical protein CLUG_01249 [Clavispora lusitaniae ATCC 42720]
 gi|238847662|gb|EEQ37126.1| hypothetical protein CLUG_01249 [Clavispora lusitaniae ATCC 42720]
          Length = 568

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           +  ++    +   ++     I      +  +      + G G+NL    +I++ +   W+
Sbjct: 1   MNIVESMVRRLMRIESRLSMIIMHQIQRKFIFLLTTRAGGLGINLTT-ADIVILYDSDWN 59

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +      +   + R  + G K+ V V+  + +N I+E V+ R   K  +  L++   ++
Sbjct: 60  PQA-----DLQAMDRAHRIGQKKQVQVFRFVTENAIEEKVMDRAAQKLRLDQLVIQQGRQ 114


>gi|258511768|ref|YP_003185202.1| SNF2-like protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478494|gb|ACV58813.1| SNF2-related protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 572

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 37/225 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG---AVYYDEEKHWKEVHDEKIKALE 60
           Y   Q  L  + +       +         ++ +    A+   E+   K    ++ + L+
Sbjct: 304 YEAVQAFLRSEFERSQTARTSILPLITLQREICSSAYAALLSLEKMLKKARDPDRARCLQ 363

Query: 61  VIIE------------------KANAAPIIVAYHFN-------SDLARLQKAFPQGRTLD 95
            +IE                  +     II+   +          L +   +    R   
Sbjct: 364 SLIEQGTSIPSYAKVEAVLKMLEDAPEKIIIFTEYRASQDFLMYTLKKHGISAVPFRGGF 423

Query: 96  KD--PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +      ++E    KI +L A   S G G+NLQ+  + ++ + L W+    +Q I RI  
Sbjct: 424 RRGKKDWMRELFSKKIRVLVAT-ESGGEGINLQF-CHHMINYDLPWNPMRLEQRIGRI-- 479

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               + G   A  + +L+ ++TI+E +++ L+ K  + + ++  L
Sbjct: 480 ---HRLGQTHACHIAHLVTKDTIEEHIMEILQEKVRMFEAVIGRL 521


>gi|163955122|ref|YP_001648226.1| hypothetical protein OsV5_149f [Ostreococcus virus OsV5]
 gi|163638571|gb|ABY27930.1| hypothetical protein OsV5_149f [Ostreococcus virus OsV5]
          Length = 480

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 31/214 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHDEKIKALE 60
           +     +    +         ++  Q+      Y +        +         K++ L 
Sbjct: 254 KNAISIISKNMV----ILECLLRARQVMIWPQMYLDGIAKQNGTQPEQWVGRSNKMETLF 309

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIPLL 112
            +I+       +V   F  ++  +Q+                ++D             + 
Sbjct: 310 RMIKSHPDEKTLVFCQFRGEMDFIQQNMECPTFRIDGSVPKEERDNQVNAFKKAPPGAVF 369

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                S G GLNLQ     +      W+     Q+I R       + G  + V+V  LI 
Sbjct: 370 IIQIKSGGQGLNLQE-ATRVYITGPSWNPATELQVIGR-----AHRTGQTKPVYVKKLIY 423

Query: 173 QN-----TIDELVLQRLRTKSTIQDLLLNALKKE 201
           +      +++E +L     KS +   +LN  + E
Sbjct: 424 KEGDGFISVEEEILALQGHKSIVCSKVLNDERIE 457


>gi|307203054|gb|EFN82245.1| Transcriptional regulator ATRX-like protein [Harpegnathos saltator]
          Length = 2019

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            L           + D      + +N+    +  L      + G G+NL    N ++ F  
Sbjct: 1705 LGLDYFRLDGQTSADNRSAWCRIFNKPTNTRARLFLISTRAGGLGINLTA-ANRVIIFDA 1763

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W+     Q I RI      + G K+  +VY  +A  T++E +  R  TK ++   +++ 
Sbjct: 1764 SWNPSHDVQSIFRI-----YRFGQKKPCYVYRFLAAKTMEEKIYNRQVTKLSLSCRVVDE 1818


>gi|151941201|gb|EDN59579.1| hypothetical protein SCY_3612 [Saccharomyces cerevisiae YJM789]
          Length = 722

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
              +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 544 SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 592

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 593 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 651

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 652 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 702


>gi|170048582|ref|XP_001853354.1| transcriptional regulator ATRX [Culex quinquefasciatus]
 gi|167870647|gb|EDS34030.1| transcriptional regulator ATRX [Culex quinquefasciatus]
          Length = 1334

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L      + G G+NL    N ++ F + W+        +   + R  + G  +  ++Y  
Sbjct: 982  LFLISTRAGGLGINLVA-ANRVIIFDVSWNPSH-----DIQSIFRVYRFGQVKPCYIYRF 1035

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A  T++E + +R  TK  I   +++ 
Sbjct: 1036 LAMGTMEEKIYERQVTKQAISKRVIDE 1062


>gi|222631484|gb|EEE63616.1| hypothetical protein OsJ_18433 [Oryza sativa Japonica Group]
          Length = 1364

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1129 PMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGK 1188

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1189 EILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLT-GASRVVLLDVVWNP 1247

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1248 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1297


>gi|159164908|gb|ABV80237.2| required to maintain repression 1 [Zea mays]
 gi|159164910|gb|ABV80239.2| required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1202 PMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGK 1261

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1262 EILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNP 1320

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1321 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|326483589|gb|EGE07599.1| DNA repair protein rad5 [Trichophyton equinum CBS 127.97]
          Length = 1152

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    N +     WW        +E   + R  + G  R V 
Sbjct: 1045 PPPSVLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVK 1098

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V   + +N+I+  +L+    K  I   L
Sbjct: 1099 VSRFVVKNSIEGRILKIQERKMMIAGSL 1126


>gi|326472599|gb|EGD96608.1| DNA repair protein Rad5 [Trichophyton tonsurans CBS 112818]
          Length = 1177

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L     + G GLNL    N +     WW        +E   + R  + G  R V 
Sbjct: 1070 PPPSVLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVK 1123

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V   + +N+I+  +L+    K  I   L
Sbjct: 1124 VSRFVVKNSIEGRILKIQERKMMIAGSL 1151


>gi|307111780|gb|EFN60014.1| hypothetical protein CHLNCDRAFT_56509 [Chlorella variabilis]
          Length = 1238

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 62/228 (27%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVII--EKANAAPIIVAYHFNSD 80
           K ++  ++ N  +     + W           K+  L+ ++   K     +++       
Sbjct: 718 KCMELRKVCNHPMLSYPPETWAVGDAIVRQCGKMLVLDRLLVKMKVTGHRVLLFSTMTKL 777

Query: 81  LARLQKAFPQ-------------------GRTLDKDPCTIQEWNEGKIP--LLFAHPASC 119
           L  L+                           L+     IQ++N    P  +      + 
Sbjct: 778 LDLLEVYLRWRQLPEHLGGGTMQYLRIDGSTALEDRESAIQQFNAKDSPAFIFLLSIRAA 837

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--------- 170
           G GLNLQ   + +V +    + +      E   + R  + G  + V V +L         
Sbjct: 838 GRGLNLQS-SDTVVIYDPDPNPKN-----EEQAIARSHRIGQTKEVRVIHLEAVADAPRG 891

Query: 171 ------------------IAQNTIDELVL-QRLRTKSTIQDLLLNALK 199
                             +  ++I+ LV  +  RTK  + + +++A +
Sbjct: 892 SVVPPNPAAVAAVAAGKRLYGDSIESLVRNEIQRTKIEMANEVIDAGR 939


>gi|159164912|gb|ABV80241.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1202 PMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGK 1261

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1262 EILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNP 1320

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1321 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|159164909|gb|ABV80238.2| required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1202 PMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGK 1261

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1262 EILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNP 1320

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1321 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|256269159|gb|EEU04491.1| Rad5p [Saccharomyces cerevisiae JAY291]
          Length = 1170

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 992  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1040

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1041 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1099

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1100 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1150


>gi|327356947|gb|EGE85804.1| DNA repair protein rad5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1199

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N +     WW      Q I+R+      + G  + V
Sbjct: 1091 EPTPNVLLISLRAGGVGLNLTT-ANQVFMMDPWWSFATEAQAIDRV-----HRMGQLKDV 1144

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1145 SVTRFIVKDSIEGRMLRIQERKMMIAGSL 1173



 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 4/138 (2%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
                 ++ ++  Q     V    +    E  D  I   +  + K +     +   F   
Sbjct: 806 SYTTIFAQILRLRQTCCHPVLTRNQTIVAEEEDAAIATDDANVFKDDMDLQDLIDRFTMT 865

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +       Q  T       +++      G+ P+    P       +  +          
Sbjct: 866 TSSEDADSQQDPTNKFTTHALRQIQTETSGECPICTDEPMVDPAVTSCWHSACKKCLVDY 925

Query: 138 WWDLEEHQQMIERIGVTR 155
               +  +  I R    R
Sbjct: 926 VEH-QRDKGQIPRCFSCR 942


>gi|296220828|ref|XP_002756502.1| PREDICTED: lymphoid-specific helicase isoform 4 [Callithrix
           jacchus]
          Length = 808

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 36/180 (20%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                 ++  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVINSGKFLILDRMLPELKKRGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             S L  L                              +        ++ Y        S
Sbjct: 623 MTSMLDILMDYCH-----------------------LRNFNFSRLDGSMSYSERERNMHS 659

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              D E +    +     R  + G  + V VY L+  NTID+ +++R   K  ++ L+++
Sbjct: 660 FNTDPEVN-PQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIH 718


>gi|239613018|gb|EEQ90005.1| DNA repair protein rad5 [Ajellomyces dermatitidis ER-3]
          Length = 1194

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N +     WW      Q I+R+      + G  + V
Sbjct: 1086 EPTPNVLLISLRAGGVGLNLTT-ANQVFMMDPWWSFATEAQAIDRV-----HRMGQLKDV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1140 SVTRFIVKDSIEGRMLRIQERKMMIAGSL 1168


>gi|261189609|ref|XP_002621215.1| DNA repair protein rad5 [Ajellomyces dermatitidis SLH14081]
 gi|239591451|gb|EEQ74032.1| DNA repair protein rad5 [Ajellomyces dermatitidis SLH14081]
          Length = 1194

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E    +L     + G GLNL    N +     WW      Q I+R+      + G  + V
Sbjct: 1086 EPTPNVLLISLRAGGVGLNLTT-ANQVFMMDPWWSFATEAQAIDRV-----HRMGQLKDV 1139

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   I +++I+  +L+    K  I   L
Sbjct: 1140 SVTRFIVKDSIEGRMLRIQERKMMIAGSL 1168



 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 4/138 (2%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
                 ++ ++  Q     V    +    E  D  I   +  + K +     +   F   
Sbjct: 801 SYTTIFAQILRLRQTCCHPVLTRNQTIVAEEEDAAIATDDANVFKDDMDLQDLIDRFTMT 860

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +       Q  T       +++      G+ P+    P       +  +          
Sbjct: 861 TSSEDADSQQDPTNKFTTHALRQIQTETSGECPICTDEPMVDPAVTSCWHSACKKCLVDY 920

Query: 138 WWDLEEHQQMIERIGVTR 155
               +  +  I R    R
Sbjct: 921 VEH-QRDKGQIPRCFSCR 937


>gi|238570323|ref|XP_002386825.1| hypothetical protein MPER_14768 [Moniliophthora perniciosa FA553]
 gi|215439877|gb|EEB87755.1| hypothetical protein MPER_14768 [Moniliophthora perniciosa FA553]
          Length = 91

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+NL    +I+V +   W+ +      +   + R  + G  + V+V+  
Sbjct: 4   IFLLTTRAGGLGINLTT-ADIVVLYDSDWNPQA-----DLQAMDRAHRIGQTKQVYVFRF 57

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           I + +++E +L+R   K  +  L++   +
Sbjct: 58  ITEGSVEERMLERAAQKLRLDQLVIQQGR 86


>gi|239982028|ref|ZP_04704552.1| hypothetical protein SalbJ_21517 [Streptomyces albus J1074]
 gi|291453879|ref|ZP_06593269.1| helicase domain-containing protein [Streptomyces albus J1074]
 gi|291356828|gb|EFE83730.1| helicase domain-containing protein [Streptomyces albus J1074]
          Length = 608

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 39/232 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------- 52
           + Y             E  +        ++ L  A       E +   E           
Sbjct: 344 EIYDALVGRYSARASAEREDFDALGKAMLRLLMAATSPALLGEAESRYEPLTYRVPPLRV 403

Query: 53  ------------------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF---- 88
                               K K    I+ +        +V   F   L  +++ F    
Sbjct: 404 PASDSLFTLMRDLPSYELSPKYKEALKIVSENAAAGRKTLVWTTFVRSLTTMERLFATFE 463

Query: 89  ---PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                G T D++    +   +    +L ++PA+ G G++L    +  V+    +      
Sbjct: 464 PAVVHGGTPDREEQIRRFRTDPDCMVLLSNPATLGEGISLHRDCHDAVYVDRDFMAGRFL 523

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q ++RI           R V V  L A+ TIDE+V  RL  K      +L+ 
Sbjct: 524 QSLDRIHRLGLAPDAETR-VTV--LAAERTIDEVVALRLEQKLEFMGKILDD 572


>gi|159164914|gb|ABV80243.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1202 PMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGK 1261

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1262 EILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNP 1320

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1321 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|332024047|gb|EGI64265.1| Transcriptional regulator ATRX-like protein [Acromyrmex echinatior]
          Length = 2412

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
              ++    +  +   +F  D     +       +   P         +  L      + G
Sbjct: 1990 DTLDNHTGSWSLGLDYFRLDGQTSPENRNLWCKIFNRP------TNMRARLFLISTRAGG 2043

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             G+NL    N ++ F   W+     Q I RI      + G K+  +VY  +A  T++E +
Sbjct: 2044 LGINLTA-ANRVIIFDASWNPSHDVQSIFRI-----YRFGQKKPCYVYRFLAAGTMEEKI 2097

Query: 181  LQRLRTKSTIQDLLLNA 197
              R  TK ++   +++ 
Sbjct: 2098 YNRQVTKLSLSCRVVDE 2114


>gi|311742523|ref|ZP_07716332.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311314151|gb|EFQ84059.1| ATP-dependent RNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 710

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F     R            +         +  + ++    ++ G GLNL    NI++   
Sbjct: 567 FAKAGLRYASIRGNQTPSVRQQNIDAFVEDPDVAVVVCSLSAAGVGLNLHVASNIVLAEL 626

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W D E+         + R  + G +  V  + +IA  TID  +++ + +K+ +    L+
Sbjct: 627 SWTDAEQT------QAIDRVHRIGQEEPVTAWRIIAAQTIDTKIVELIDSKAGLAARALD 680

Query: 197 ALKKET 202
              +E 
Sbjct: 681 GSDEEV 686


>gi|198430961|ref|XP_002124279.1| PREDICTED: similar to MGC115661 protein [Ciona intestinalis]
          Length = 831

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 29/200 (14%)

Query: 7   FQRELYCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            ++    +     +     ++A K    LQ  N    +                +  ++ 
Sbjct: 512 IKQRKLLEASQSAVNQKGLSAAEKHGILLQYFNETAKFKLPGIKS--------YVLDLL- 562

Query: 65  KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
                  ++  H  S L                       ++    +  +       +  
Sbjct: 563 -EGGHKFLLFAHHKSVLDSVETDLNKKGCDYIRIDGSTPSERRQTEVARFQENSSCKVAL 621

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+ L    +++VF  L+W+              R  + G +  V V+YLIA+
Sbjct: 622 LSITAANMGITLHS-ASLVVFAELFWNPGILV-----QAEDRCYRIGQRDVVNVHYLIAK 675

Query: 174 NTIDELVLQRLRTKSTIQDL 193
           NT D+L+ Q ++ K  +   
Sbjct: 676 NTADDLIWQMIKKKLEVLSK 695


>gi|302658649|ref|XP_003021026.1| SNF2 family helicase/ATPase, putative [Trichophyton verrucosum HKI
            0517]
 gi|291184901|gb|EFE40408.1| SNF2 family helicase/ATPase, putative [Trichophyton verrucosum HKI
            0517]
          Length = 1932

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 68/193 (35%), Gaps = 10/193 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKT-VKCLQL--ANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +   +++G+        S+   K   +   +        +   ++ DE IKA + I+ 
Sbjct: 1276 VEDDVLEIEGQTAITDEVVSQFEQKFKDIKDLDSPENSHRTQMVGQIVDESIKAGDKILI 1335

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             +     +       +    +     G+T         +++ +    +      +   GL
Sbjct: 1336 FSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQAATRDFTDSDAHVYLISTKAGALGL 1395

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N+  G N ++ F   ++        E   + R  + G  + VFVY  +   T +EL+ ++
Sbjct: 1396 NI-IGANRVIIFESEYNPT-----WEEQAIGRAYRLGQTKDVFVYRFVMGGTFEELIHEK 1449

Query: 184  LRTKSTIQDLLLN 196
               K  +    ++
Sbjct: 1450 GVFKKNMALRAID 1462


>gi|329767794|ref|ZP_08259310.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
 gi|328838895|gb|EGF88489.1| hypothetical protein HMPREF0428_01007 [Gemella haemolysans M341]
          Length = 321

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 2   KQYHKFQRELYCDLQGE-----NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K Y +F++    + + +              + +   QLA+             +H+E  
Sbjct: 132 KHYKEFEKHAVVEFKSKLFGEVEYVGDTQLKERLFLRQLAS-------------IHNENK 178

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL---DKDPCTIQEWNEGKIPLLF 113
           K     I  +    +I+ Y+FN +   ++   P+ R +   + +    + +N     +  
Sbjct: 179 KEKLKDIINSTEGRLIIFYNFNHEKEAIKSCIPKDRPISYVNGELVDKENYNNADNSITL 238

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G N+Q   N L+F+S     E++ Q I+RI      + G ++  F Y L+ Q
Sbjct: 239 MQYQAGAKGHNMQK-ANHLIFYSPTEKCEDYMQSIKRI-----HRIGQEKPCFYYKLVVQ 292

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           N+I+E + + L       + L N
Sbjct: 293 NSIEEDIYKALERGEDYTNELFN 315


>gi|125552219|gb|EAY97928.1| hypothetical protein OsI_19844 [Oryza sativa Indica Group]
          Length = 1367

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1132 PMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGK 1191

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1192 EILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLT-GASRVVLLDVVWNP 1250

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1251 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1300


>gi|312075594|ref|XP_003140486.1| hypothetical protein LOAG_04901 [Loa loa]
 gi|307764349|gb|EFO23583.1| hypothetical protein LOAG_04901 [Loa loa]
          Length = 698

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 21/202 (10%)

Query: 5   HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
                +L  D   + IE        ++K  +L     Y         +  +   +L  I+
Sbjct: 469 KALTEKLLDDDGNKQIEQLFEKNFLSMKLKKLFEHMDYALSCGDKCVIVSQ-WTSLLNIL 527

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGH 121
           E       I+                   +          +N  +    ++       G 
Sbjct: 528 EHHLRRKEILYTS-----------INGKVSSSDRQSRANSFNKIDSGPRVMLLSLT-AGG 575

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                 GGN L    L W+    QQ  +RI      + G  + VF++ L+   TI+E VL
Sbjct: 576 VGLNLVGGNHLFLVDLHWNPALEQQACDRI-----YRIGQTKNVFIHKLVCLETIEERVL 630

Query: 182 QRLRTKSTIQDLLLNALKKETI 203
              R K T+   +L  +  + +
Sbjct: 631 ALQRIKQTLAKDVLEGVASKKL 652


>gi|255320269|ref|ZP_05361454.1| Non-specific serine/threonine protein kinase [Acinetobacter
            radioresistens SK82]
 gi|255302708|gb|EET81940.1| Non-specific serine/threonine protein kinase [Acinetobacter
            radioresistens SK82]
          Length = 1067

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 36/229 (15%)

Query: 7    FQRELYCDL------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
             QR LY D+        E        +       +              E          
Sbjct: 844  LQRHLYADVINRYRRLSEEGNQGAMLASLHSMRMICAHPFQLQPNASIYESPKVDWLIKT 903

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKDPCTIQEW 104
            + + K     +I+   F      L++                     +        I ++
Sbjct: 904  LEVIKTKNEKVIIFTEFRDIQVFLKRILLERFGLNVTTVNGDSNTSSKKGLTRQNLIDKF 963

Query: 105  NE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                   ++     + G G+N+Q   N ++ ++  W+  +     E     R  + G  +
Sbjct: 964  QATSGFNVIILSTTAVGFGVNIQK-ANHVIHYTRSWNPAK-----EDQATDRAYRIGQDK 1017

Query: 164  AVFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLLN---ALKKETIHV 205
             VFVYY        +T +  + + L +K  + D +L     L KE I +
Sbjct: 1018 EVFVYYPSIAANDFDTFEIKLDRLLSSKRALADDMLQPSRELSKELIEM 1066


>gi|21432058|gb|AAH32964.1| 0610007P08Rik protein [Mus musculus]
          Length = 394

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 202 KMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 246

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N+++ F   W+      
Sbjct: 247 LDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNF-VGANVVILFDPTWNPAN--- 302

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   V R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 303 --DLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAK 355


>gi|195387391|ref|XP_002052379.1| GJ22014 [Drosophila virilis]
 gi|194148836|gb|EDW64534.1| GJ22014 [Drosophila virilis]
          Length = 267

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN- 105
           +  E   +KI   + ++E   ++  +     N    +           +     I+ +N 
Sbjct: 34  NVVEYFFKKITESDELLEDIPSSYKVSNTWIN---GQDYYRLDGKTPKNIRHEMIKRFNS 90

Query: 106 --EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
               +  +      + G G+NL  G N ++     W+    QQ I RI      + G K+
Sbjct: 91  EANRRARVFLISAKAGGQGINL-IGANRVIILDTSWNPSNDQQNIFRI-----FRLGQKK 144

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++Y LIA  T++E V  R  TK  +   +++ 
Sbjct: 145 NCYIYRLIAMGTMEEKVYSRSVTKQAMSFRVVDE 178


>gi|259148021|emb|CAY81270.1| Rad5p [Saccharomyces cerevisiae EC1118]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|229543866|ref|ZP_04432925.1| SNF2-related protein [Bacillus coagulans 36D1]
 gi|229325005|gb|EEN90681.1| SNF2-related protein [Bacillus coagulans 36D1]
          Length = 567

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     Q +      +L A   + G 
Sbjct: 376 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMRQLFEN-HAQVLIAT-EAGGE 433

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + ++ F L W+    +Q I R+      + G ++ V +Y    +NT++E +L
Sbjct: 434 GINLQF-CHHMINFDLPWNPMRLEQRIGRV-----HRLGQEKDVHIYNFATKNTVEEHIL 487

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + L  K  + + ++  L +
Sbjct: 488 KLLYEKIHLFERVIGELDE 506


>gi|170039496|ref|XP_001847569.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863046|gb|EDS26429.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 959

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDP---CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
           +  +       + +     +         E       ++     + G GLNL  G N L+
Sbjct: 823 YKEEEEAFMYWWCKTPLGRRRSKQMEMEHEARMEIENIMLLSLTAGGVGLNL-VGANHLM 881

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              L W+ +      E     R  + G K+ V+++  +  +T+++ ++   + K  +   
Sbjct: 882 LLDLHWNPQL-----EAQAQDRVYRVGQKKPVYIWKFMCTDTVEQKIMGLQQKKLDLATQ 936

Query: 194 LLNALK 199
            L   K
Sbjct: 937 ALTGTK 942


>gi|323347520|gb|EGA81788.1| Rad5p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|312377807|gb|EFR24547.1| hypothetical protein AND_10782 [Anopheles darlingi]
          Length = 866

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILV 133
           +  +       + +     +    +++ +E  +    ++     + G GLNL  G N L 
Sbjct: 730 YKEEEEAFLYWWCKTPLGRRRSKQLEKDHEAMMEMENIMLLSLTAGGVGLNL-VGANHLF 788

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                W+ +      E     R  + G  + V+++  I Q T+++ +L   + K  I D 
Sbjct: 789 LLDPHWNPQL-----EAQAQDRIYRVGQTKPVYIWKFICQETVEQKILALQQHKLEIADG 843

Query: 194 LL 195
           +L
Sbjct: 844 VL 845


>gi|154302115|ref|XP_001551468.1| hypothetical protein BC1G_09738 [Botryotinia fuckeliana B05.10]
 gi|150855512|gb|EDN30704.1| hypothetical protein BC1G_09738 [Botryotinia fuckeliana B05.10]
          Length = 1176

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +         +  I ++    A+ G GLNL    N +      ++     Q I+R+    
Sbjct: 1057 RSMAMENFREDPSIVVILVSIAAGGLGLNLTT-ANKVYVMEPQFNPAAEAQAIDRV---- 1111

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              + G KR V     I   + +E +LQ    K  +  L +++ K   
Sbjct: 1112 -HRLGQKREVQTVRFIMNKSFEEKMLQIQDKKQKLASLSMDSQKGRL 1157


>gi|123427014|ref|XP_001307162.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121888775|gb|EAX94232.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1535

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 32/192 (16%)

Query: 32  CLQLANGAVYY------------DEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYH- 76
             ++ N                  E          K + L++I+   K     +++    
Sbjct: 732 LHRICNHPFMVEGSEEYYTAILGMERSKALVETCCKFQFLDLILPIFKKQNRSVLIFSQR 791

Query: 77  ---------FNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNL 125
                    +               + D     I  +  +   + +      S   GLNL
Sbjct: 792 IKVLQLLAEYCQLRKYTYVMLDGQLSADDKKTAIDSFVSDNSDVFIFLISTKSGAEGLNL 851

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               ++ + F   W+        +   + R  + G  + V V  LI   T +  +  R +
Sbjct: 852 TK-ASVTIIFDPDWNP-----NNDLQALGRCHRIGQTKRVLVLRLITFGTYEHTMYTRAQ 905

Query: 186 TKSTIQDLLLNA 197
            K  + D +L  
Sbjct: 906 KKLKLWDAVLGD 917


>gi|46111685|ref|XP_382900.1| hypothetical protein FG02724.1 [Gibberella zeae PH-1]
 gi|85540718|sp|Q4IJ84|RAD5_GIBZE RecName: Full=DNA repair protein RAD5
          Length = 1154

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 19/163 (11%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN 105
            +  L  +  +      +V   F S L+ ++                         + E+ 
Sbjct: 990  MSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFT 1049

Query: 106  EGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            E K   +L     + G GLNL      +     WW        +E   + R  + G +  
Sbjct: 1050 EKKGFTILLLSLRAGGVGLNLTS-AGRVFMMDPWWSFA-----VEAQAIDRVHRMGQEAE 1103

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDL--LLNALKKETIHV 205
            V V   + + +++E +L+    K  I     ++N  +K+   +
Sbjct: 1104 VQVKRFVVKESVEERMLKVQERKKFIATSLGMMNDEEKKLQRI 1146


>gi|297834548|ref|XP_002885156.1| hypothetical protein ARALYDRAFT_318431 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330996|gb|EFH61415.1| hypothetical protein ARALYDRAFT_318431 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 630

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 8/160 (5%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
             V + E      ++D      +  +         ++    + +  LQ    QG      
Sbjct: 445 HDVVFTESAVRSCINDYDDPQDKNALVMLQGD--FISSKIKAVIELLQSLAQQGSPDTPP 502

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             TI       + ++     +   GLN+    + ++   LWW+        E   + R  
Sbjct: 503 IKTIVFSQWTDVQVMLMSLKAGNLGLNMVAACH-VILLDLWWNPTT-----EDQAIDRAH 556

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G  R V V  +  +NT++E +L     K  I    L  
Sbjct: 557 RIGQTRTVTVTRIAIKNTVEERILTLQERKRNIVASALGE 596


>gi|156932814|ref|YP_001436730.1| hypothetical protein ESA_00610 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531068|gb|ABU75894.1| hypothetical protein ESA_00610 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1080

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 31/211 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            ++     +              K   +       D   H+++ +  K+  L   + +  A
Sbjct: 859  QQQQAFSEEMQQAGTGMLGLLHKLKLICAHPAVVDPAPHFRD-NSPKLNWLLKKLAEIKA 917

Query: 69   APIIVAYHFNS--DLARLQKAFPQGRTLDK-----------------DPCTIQEWNE-GK 108
                    F    DL R  +     +   +                     I  +     
Sbjct: 918  TTKDKVIIFTELRDLQRELQHAIYQKFGFRPVIINGDTSTKSHSQNSRQRLIDNFQSQPG 977

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              ++     + G G+N+Q   N ++ F+  W+  +     E     R  + G  + V+VY
Sbjct: 978  FGIIILSTVAVGFGVNVQK-ANHVIHFTRCWNPAK-----EDQATDRAYRIGQTKDVYVY 1031

Query: 169  YLIAQN----TIDELVLQRLRTKSTIQDLLL 195
            Y   ++    T +  + + L+ +  +   +L
Sbjct: 1032 YPTVRDPEITTFEVTLDELLKRRRALAKDML 1062


>gi|302753908|ref|XP_002960378.1| hypothetical protein SELMODRAFT_73550 [Selaginella moellendorffii]
 gi|300171317|gb|EFJ37917.1| hypothetical protein SELMODRAFT_73550 [Selaginella moellendorffii]
          Length = 159

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 20/149 (13%)

Query: 64  EKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEW-NEGKIPLL 112
                   ++   + S L  ++                 +  K    I+ +  +  + ++
Sbjct: 1   MTPRGEKSLIFSQWTSMLNLIEPELEGAGIQFSRIDGSMSAGKRVAAIKRFSEDPDVVVM 60

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +  + +      + ++   +WW+        E   + R  + G  R V V   + 
Sbjct: 61  LISLRAGLNLV----AASHVLLMDMWWNPTT-----EDQAIDRTHRIGQTRPVHVTRFVV 111

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           + T+ E VL+    K  + + +      E
Sbjct: 112 KQTVQEHVLEIQEKKKKLVEFVFGEKSSE 140


>gi|298376514|ref|ZP_06986469.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 3_1_19]
 gi|298266392|gb|EFI08050.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 3_1_19]
          Length = 563

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 21/205 (10%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   +R+L   L+           K++K      G V              K++ +  
Sbjct: 348 KEYQDAERDLVDYLRRYKEADDEKVQKSLK------GEVMVRIGILKDITARGKLREVID 401

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-------EWNEGKIPLL 112
            +   + N   II+  + +  + RL +AFP    +       Q            K  ++
Sbjct: 402 FVKDFRENGKKIILFCNLHEIVDRLLQAFPSAVCVTGRQDMQQKQAAIDAFQRNPKTDVI 461

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+ L    N + F  L W   +          +R  + G K +V  YYL+ 
Sbjct: 462 ICSIKAAAAGITLTASSN-VAFIELPWTYADCD-----QAESRAHRIGQKDSVNCYYLLG 515

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNA 197
           + TID+ + + +  K  I + +L A
Sbjct: 516 RKTIDQKLYRIIEEKKHISNAVLGA 540


>gi|190406072|gb|EDV09339.1| DNA repair protein RAD5 [Saccharomyces cerevisiae RM11-1a]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|241560242|ref|XP_002400839.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
 gi|215499788|gb|EEC09282.1| DNA repair and recombination protein RAD54B, putative [Ixodes
           scapularis]
          Length = 614

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
              L        + +   ++     K + L+ ++         +++   F   L  L+  
Sbjct: 419 LHTLCTKYQSLRDYRLEDDLIMDSGKFRELDSVLSDSLKKNHRVLIFSQFTMVLDILEAY 478

Query: 88  FPQ----------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                          ++      I ++N +  I        + G G+NL    N++V   
Sbjct: 479 LNIRGHKWLRLDGATSVTDRQDLIDKYNGDSSILAFLLSTRAGGQGINL-ASANVVVLHD 537

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + ++        ++    R  + G  R VFV   ++++TI+E +L   + K  ++  +  
Sbjct: 538 VDFNP-----YNDKQAEDRCHRLGQSRDVFVIKFVSKDTIEEGILAIAKEKLKLEKDITE 592

Query: 197 ALKKETIH 204
               E + 
Sbjct: 593 ETVNEDMD 600


>gi|149915099|ref|ZP_01903627.1| helicase/SNF2 family domain protein [Roseobacter sp. AzwK-3b]
 gi|149810820|gb|EDM70659.1| helicase/SNF2 family domain protein [Roseobacter sp. AzwK-3b]
          Length = 871

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 11/202 (5%)

Query: 1   MKQYHKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           M    + +R +   +L  +        +K  K + L    +  +E   +   +      +
Sbjct: 414 MLMQDEIERLDEILELADKVESE----TKVTKLVDLIETRLAPEEPVLFFTEYKATQALV 469

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
              +E+      +   + +  L        +           +++N G+         + 
Sbjct: 470 HKTLEEKFGKGCVGFINGDERLVVSGPNDQETILQYPRDKAAEDFNGGRTR-FLISTEAG 528

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G++LQ     LV   L W+     Q + R+      + G KRAV VY +    T++  
Sbjct: 529 GEGIDLQDRCATLVHVDLPWNPMRLHQRVGRL-----NRYGQKRAVQVYLMRNPETVEAR 583

Query: 180 VLQRLRTKSTIQDLLLNALKKE 201
           +   L  K       L+A  +E
Sbjct: 584 IWALLEEKLGRIQAALSASMEE 605


>gi|149182929|ref|ZP_01861387.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. SG-1]
 gi|148849378|gb|EDL63570.1| DNA/RNA helicase (SNF2 family) protein [Bacillus sp. SG-1]
          Length = 565

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +L A   + G 
Sbjct: 376 IIFTEYRATQLYLQWFLKQNGITSVPFRGGFKRGKKDWMRELFKN-HAQVLIAT-EAGGE 433

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + ++ F L W+    +Q I R+      + G    V +Y    ++T++E +L
Sbjct: 434 GINLQF-CHHIINFDLPWNPMRLEQRIGRV-----HRLGQTEDVHIYNFATRDTVEEHIL 487

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K ++ + ++  L
Sbjct: 488 KLLYEKISLFEKVIGQL 504


>gi|119478779|ref|XP_001259438.1| DNA excision repair protein (Rad5), putative [Neosartorya fischeri
            NRRL 181]
 gi|119407592|gb|EAW17541.1| DNA excision repair protein (Rad5), putative [Neosartorya fischeri
            NRRL 181]
          Length = 1245

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    + +     WW        IE   + R  + G  R V V   
Sbjct: 1142 VLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDVSVTRF 1195

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+  +L+    K  I   L
Sbjct: 1196 IVKDSIEGRMLRVQERKMNIAGSL 1219


>gi|85540717|sp|Q4WVM1|RAD5_ASPFU RecName: Full=DNA repair protein rad5
          Length = 1245

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    + +     WW        IE   + R  + G  R V V   
Sbjct: 1142 VLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDVSVTRF 1195

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+  +L+    K  I   L
Sbjct: 1196 IVKDSIEGRMLRVQERKMNIAGSL 1219


>gi|70997286|ref|XP_753393.1| DNA excision repair protein (Rad5) [Aspergillus fumigatus Af293]
 gi|66851029|gb|EAL91355.1| DNA excision repair protein (Rad5), putative [Aspergillus fumigatus
            Af293]
 gi|159126880|gb|EDP51996.1| DNA excision repair protein (Rad5), putative [Aspergillus fumigatus
            A1163]
          Length = 1301

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    + +     WW        IE   + R  + G  R V V   
Sbjct: 1198 VLLISLRAGGVGLNLTA-ASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDVSVTRF 1251

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+  +L+    K  I   L
Sbjct: 1252 IVKDSIEGRMLRVQERKMNIAGSL 1275


>gi|114631885|ref|XP_001150802.1| PREDICTED: helicase, lymphoid-specific isoform 3 [Pan troglodytes]
          Length = 813

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 38/183 (20%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             S L  L                ++++N                  ++ Y        S
Sbjct: 624 MTSMLDILMDYCH-----------LRDFN------------FSRLDGSMSYSEREKNMHS 660

Query: 137 LWWDLEEHQQMI---ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              D E    +    +     R  + G  + V VY L+  NTID+ +++R   K  ++ L
Sbjct: 661 FNTDPEVFIFLNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 720

Query: 194 LLN 196
           +++
Sbjct: 721 IIH 723


>gi|268535648|ref|XP_002632959.1| C. briggsae CBR-RAD-26 protein [Caenorhabditis briggsae]
          Length = 1382

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 8/144 (5%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-DKDPCTIQEWN-EGKIPLLF 113
            +  LE I+ K        + H              G T        I  +N E  + L  
Sbjct: 915  LDMLEEILRKRQVVKKEKSEHQERWEKNRNYLRLDGTTSGADREKLINRFNSEPGLHLFL 974

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                +   G+NL    N  +     W+        +   V R  + G ++  FVY LI  
Sbjct: 975  ISTRAGSLGINLVS-ANRCIIIDACWNP-----CHDAQAVCRVYRYGQQKKTFVYRLIMD 1028

Query: 174  NTIDELVLQRLRTKSTIQDLLLNA 197
            N+++  +  R  +K  +Q  +++ 
Sbjct: 1029 NSMERSIFNRQISKHGLQQRVVDD 1052


>gi|119498439|ref|XP_001265977.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119414141|gb|EAW24080.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1777

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNE-GK 108
            +  E IKA + ++  +++ P +        +++       G+T         + +N   +
Sbjct: 1398 IISESIKAGDKVLVFSHSIPTLDYVEHVLKISKRSYRRLDGKTPISTRQAATKSFNTVSE 1457

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +      + G GLN+  G N +V F   ++      + E   V R  + G ++ VFVY
Sbjct: 1458 EKVYLISTRAGGLGLNI-PGANRVVIFDFSFNP-----IWEEQAVGRAYRLGQQKPVFVY 1511

Query: 169  YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              IA  T +E++  +   K+ +   +++  KK  I 
Sbjct: 1512 RFIAGGTFEEIIYNKAIFKTQLAVRVVD--KKNPIR 1545


>gi|6323060|ref|NP_013132.1| Rad5p [Saccharomyces cerevisiae S288c]
 gi|417587|sp|P32849|RAD5_YEAST RecName: Full=DNA repair protein RAD5; AltName: Full=Radiation
            sensitivity protein 5; AltName: Full=Revertibility
            protein 2
 gi|172347|gb|AAA34951.1| RAD5 protein [Saccharomyces cerevisiae]
 gi|1360348|emb|CAA97556.1| RAD5 [Saccharomyces cerevisiae]
 gi|285813454|tpg|DAA09350.1| TPA: Rad5p [Saccharomyces cerevisiae S288c]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|240274021|gb|EER37539.1| DNA repair and recombination protein RAD5B [Ajellomyces capsulatus
           H143]
          Length = 294

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 20/163 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA-----------F 88
           +E     E    KI+AL  I+    +A     +V   + S L  ++              
Sbjct: 111 NEIDINPETTSSKIQALLKILTAKGQAPNTKTVVFSQWVSFLDIVEPQLVRNGITFARID 170

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  +  +D       N+    +L A    C  GLNL    N ++    WW        I
Sbjct: 171 GKMSSAKRDAAMNALSNDSNCTVLLASLNVCSVGLNLVA-ANQVILADSWWAPA-----I 224

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           E   V R  + G KR   ++ L+ +N+I++ VL + + K T+ 
Sbjct: 225 EDQAVDRVYRLGQKRPTTIWRLVMENSIEDRVLDKQKEKRTLM 267


>gi|329849600|ref|ZP_08264446.1| SNF2 family N-terminal domain protein [Asticcacaulis biprosthecum
           C19]
 gi|328841511|gb|EGF91081.1| SNF2 family N-terminal domain protein [Asticcacaulis biprosthecum
           C19]
          Length = 1164

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 38/232 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALE 60
            Y    R      +G   +             ++      DE            ++    
Sbjct: 670 AYEDLIRRAMA-GRGTMGKNDGMLQTLHAMRSVSLHPYRPDESDSDDTYVAQSARLLWTM 728

Query: 61  VIIEKANAAP-----------------IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE 103
            I+E   A                    ++   F   L         G    K    ++ 
Sbjct: 729 DILEAVKAKKEKALIFVESLDMQACLARMIQTRFR--LHAPPSRIHGGVPGAKRQDLVEV 786

Query: 104 WNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +        ++   P + G GL L    N ++  S WW+       +E     R  + G 
Sbjct: 787 FQARADCFDVMILSPKAGGVGLTLTA-ANHVIHLSRWWNPA-----VEDQSTDRVYRIGQ 840

Query: 162 KRAVFVYYLIA--------QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            R V VY  +A         ++ D  +   L  K  +   +L A + +   +
Sbjct: 841 TRPVQVYLPMAVHPDPVIGPSSFDIKLNDLLSRKRALSRDMLVAPEGDETDI 892


>gi|315648445|ref|ZP_07901544.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315276139|gb|EFU39485.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 585

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
           + K +    +I++ N   +IV   +            D   +   +  G    K    + 
Sbjct: 376 NTKAEKTIELIQQMN-EKVIVFTEYRATQEYLLNYFRDHGLVSVPYRGGMNRGKKDWMMD 434

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  GK  ++ A   + G G+NLQ+  + +V F L W+    +Q I R+      + G  
Sbjct: 435 LFR-GKAQVMIAT-EAGGEGINLQF-CHHMVNFDLPWNPMRVEQRIGRV-----HRLGQT 486

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             V ++ L    TI+E +L  L  K  + ++++  L
Sbjct: 487 NDVQIFNLSTSGTIEEHILNLLHEKINMFEMVIGGL 522


>gi|323332493|gb|EGA73901.1| Rad5p [Saccharomyces cerevisiae AWRI796]
          Length = 1169

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|310800231|gb|EFQ35124.1| WD domain-containing protein [Glomerella graminicola M1.001]
          Length = 1215

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    ++ + N+  I +L    +    GLNL    +        W+           
Sbjct: 631 PHKERQRVVERFRNDPSIRVLLLTLSCGAVGLNLTA-ASRAYLMEPNWNPTLQD-----Q 684

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R  + G +  V       +++ +E+V++  + K  +  +LL
Sbjct: 685 ALARIHRMGQENEVTTIQFYIRDSFEEVVVKNQKLKRELAGILL 728


>gi|327263495|ref|XP_003216555.1| PREDICTED: putative DNA repair and recombination protein RAD26-like
           [Anolis carolinensis]
          Length = 756

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 19/165 (11%)

Query: 50  EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------- 97
             +  K+K L+ ++     N   +++       L  L++         +           
Sbjct: 493 PKYSGKMKVLQKLLNHFRKNKDKVLLFSFSTKLLDVLEQYCMASGLDYRRLDGNTKAEDR 552

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++E+N   ++ +      + G GLN   G NI++ F   W+        +   + R 
Sbjct: 553 VKIVKEFNGMEEVNICLVSTMAGGLGLNF-VGANIVILFDPTWNPAN-----DLQAIDRA 606

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + G  R V V+ LI+  T++E++  R   K  +  +++ +   +
Sbjct: 607 YRIGQCRDVKVFRLISLGTVEEMMYLRQVYKQQLHCVVVGSENAK 651


>gi|242063742|ref|XP_002453160.1| hypothetical protein SORBIDRAFT_04g001010 [Sorghum bicolor]
 gi|241932991|gb|EES06136.1| hypothetical protein SORBIDRAFT_04g001010 [Sorghum bicolor]
          Length = 2166

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 57/223 (25%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVH----DEKIKALEVIIEKAN--AAPIIVAYHFNSDL 81
            K ++  ++ N  +      +  +        K+  L+ I+ K +     +++       L
Sbjct: 1261 KCMELRKVCNHPLLTYPFLNHGKDFMIRSCGKLWNLDRILIKLHKAGHRVLLFSTMTKLL 1320

Query: 82   ARLQKAFPQGRTLDKD----------PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGG 129
              ++      R + +              I ++N       +      + G GLNLQ   
Sbjct: 1321 DIMEDYLQWRRLVYRRIDGTTSLEDRESAIVDFNRPGSDCFIFLLSIRAAGRGLNLQS-A 1379

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ---------------- 173
            + +V +    + +      E   V R  + G  R V V Y+ A                 
Sbjct: 1380 DTVVIYDPDPNPQN-----EEQAVARAHRIGQTREVKVIYMEAVVDNISSYQKEDELRNG 1434

Query: 174  ----------------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                             +I+ L+     + K  + D ++NA +
Sbjct: 1435 GSADLEDDLAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGR 1477


>gi|311069060|ref|YP_003973983.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
 gi|310869577|gb|ADP33052.1| putative RNA polymerase-associated helicase protein [Bacillus
           atrophaeus 1942]
          Length = 556

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 8/156 (5%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
              K  + V   K    +VII     A  I    F          F  G    K      
Sbjct: 357 QNSKAIQVVDLIKKIDDKVIIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKD 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  GK+ +L A   + G G+NLQ+  N ++ + L W+    +Q I RI      + G +
Sbjct: 417 LFR-GKVQVLIAT-EAGGEGINLQF-CNNIINYDLPWNPMRLEQRIGRI-----HRLGQE 468

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R V +Y +  ++T++E +L+ L  K  + + ++  L
Sbjct: 469 RDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGEL 504


>gi|327303684|ref|XP_003236534.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326461876|gb|EGD87329.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1167

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+++      ++     Q ++R
Sbjct: 1047 MSLKQRNASIETFSTDDNVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPAAIAQAVDR 1105

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G  R V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1106 V-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1155


>gi|310800485|gb|EFQ35378.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1015

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 41   YYDEEKHWKEVHDEKIKA-LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
              DE    +E +  K+ A +  + E       IV   +   L  +     +         
Sbjct: 853  KDDELYFNQEGYSTKMDALIRDVKEDVWTTKSIVFSCWTRTLHLVGMHLERAGVRFAMID 912

Query: 92   --RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                L +    ++ +  +  + +L     +   GLNL    N +    L W+       +
Sbjct: 913  GNCPLSERQKILERFAKDDDLRVLIMTTGTGAFGLNLT-CANRVFIVELQWNPS-----V 966

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            E   + R  + G  + V V   + + T++E +  +   K  +  
Sbjct: 967  ENQAIARAIRFGQDQKVLVTRYVTKATVEEEMRSQQIVKKNLAA 1010


>gi|302509082|ref|XP_003016501.1| hypothetical protein ARB_04790 [Arthroderma benhamiae CBS 112371]
 gi|291180071|gb|EFE35856.1| hypothetical protein ARB_04790 [Arthroderma benhamiae CBS 112371]
          Length = 1187

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+++      ++     Q ++R
Sbjct: 1067 MSLKQRNASIETFSTDDNVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPAAIAQAVDR 1125

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G  R V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1126 V-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1175


>gi|290980595|ref|XP_002673017.1| lar to transcriptional regulator ATRX (X-linked helicase II)
            [Naegleria gruberi]
 gi|284086598|gb|EFC40273.1| lar to transcriptional regulator ATRX (X-linked helicase II)
            [Naegleria gruberi]
          Length = 1366

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 42/201 (20%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
             V  ++ K     +  K++ L  IIEK   N   I+V   +   L  ++  F     +  
Sbjct: 811  PVLANDYKLHNARNSPKMEFLLRIIEKCYLNNEKILVFTQYVEMLDVMEAVFKHTPIVVG 870

Query: 97   ---------------------------------DPCTIQEW-NEGKIPLLFAHPASCGHG 122
                                                 +  +  E    +      + G G
Sbjct: 871  TEEDEDNQTVPIRKTLSKGDDYLRMDGSISGRARQDLVDSFTEESTAHVFIISTKAGGLG 930

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +NL      +V F   W+        ++  + R  + G K+ V+VY  +   + +E +  
Sbjct: 931  INL-IAATRVVIFDPCWN-----DTWDKQALFRAYRYGQKKPVYVYRFVTYGSAEEKIFN 984

Query: 183  RLRTKSTIQDLLLNALKKETI 203
                K+ +   +++    + I
Sbjct: 985  LSTAKAWLAKRIVDDKTPDLI 1005


>gi|242087829|ref|XP_002439747.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
 gi|241945032|gb|EES18177.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
          Length = 1535

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 55   KIKALEVI--IEKANAAPIIVAYHFNSDLARLQKA--------------FPQGRTLDK-D 97
            K + +  +  + +A    +++   +   L  +++                  G+ L +  
Sbjct: 1316 KTRFVMEVVRLCEALREKVLIFSQYIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYR 1375

Query: 98   PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              +I+ +N       +L A   +C  G++L  G + +V   + W+       + R  ++R
Sbjct: 1376 QASIEAFNNPNNESRVLLASTRACCEGISLT-GASRVVLLDVVWNPA-----VGRQAISR 1429

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1430 AFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1470


>gi|71654268|ref|XP_815757.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70880835|gb|EAN93906.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1053

 Score = 70.2 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNEGK-IPLLFAH 115
            ++         +   +  D +  +           +  +   T++ +N  +   +L   
Sbjct: 651 KMLSLFEGIIAEMNRRWQQDGSLPRPIRFCRLDGNSSGAERENTLRSFNSSRGADVLLLS 710

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+N+      ++     ++  +     +R  + R  + G  R VFVY L+   T
Sbjct: 711 MKAGGVGINITS-ATRVILADSGFNPAD-----DRQAIGRAYRYGQTRPVFVYRLVCYQT 764

Query: 176 IDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           ++  + Q+   K  +   ++   +LK++ +
Sbjct: 765 LEHRMFQQKVAKEWLFHTIVEEASLKRDAL 794


>gi|330841728|ref|XP_003292844.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
 gi|325076886|gb|EGC30638.1| hypothetical protein DICPUDRAFT_58185 [Dictyostelium purpureum]
          Length = 931

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 23/204 (11%)

Query: 17  GENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPI 71
           G      N  S   +  Q    +NG V     + ++E    K+K+    I K        
Sbjct: 53  GNVFSKSNKISMFQQFKQNQDESNGLVKGQIMELYRETGKAKLKSSCEYISKLIKEKEKF 112

Query: 72  IVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPLLFAHPASCG 120
           ++  H +  +  L+ A  + +              +     +        +      + G
Sbjct: 113 LIFAHHSDIMDGLESAIQKSKAGYIRIDGSTPAVLRQTYVNKFQTNSSCQVALLSITAAG 172

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    N++VF  L+W          R    R  + G  + V+++YLI +NT+D+ +
Sbjct: 173 TGLTLTA-SNLVVFVELYWTPGVL-----RQAEDRVHRIGQTKDVYIHYLIGKNTLDDRI 226

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
              +  K  +    L+  ++E + 
Sbjct: 227 WPIICNKLEVLGETLDG-QEEILR 249


>gi|296005042|ref|XP_002808858.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|225632255|emb|CAX64136.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1221

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 7/113 (6%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             ++           +    I+ +  +  I +      + G GLNL    N ++     W+
Sbjct: 1095 HQIYVRLDGSTNTIERQKIIKRFSKDENIFVFLLSTKAGGVGLNL-IAANHVILMDQDWN 1153

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                    +R    R  + G K  VF+Y L  +NTI+E +L+  + K  +   
Sbjct: 1154 P-----HNDRQAEDRVHRLGQKNEVFIYRLCCKNTIEEAILKCNKAKLHLDQA 1201


>gi|209880686|ref|XP_002141782.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
 gi|209557388|gb|EEA07433.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
          Length = 854

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLAR---------- 83
            N    Y  +         K+  +  IIEK        +V  H    L            
Sbjct: 674 TNFFDKYLIKDELVLGDSCKLIKMHQIIEKKVIRREKCLVFCHHTMLLDIVEEYIKLKFG 733

Query: 84  ----LQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                         +D     ++++       +      + G GLNL    + ++   + 
Sbjct: 734 DKTDFYIRLDGTTPIDTRQKLVEQFQTSSSTLIFLLSTKAAGQGLNLTA-ASTVIMMDID 792

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ++ +     IER    R  + G  + V ++ LI +N+I+E +L+   +K ++   
Sbjct: 793 YNPQ-----IERQAEDRVHRLGQSKDVSIFKLICRNSIEEDILKCCESKLSLDAA 842


>gi|284048597|ref|YP_003398936.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
 gi|283952818|gb|ADB47621.1| SNF2-related protein [Acidaminococcus fermentans DSM 20731]
          Length = 969

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 39/224 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLA--------NGAVYYDEEKHWKEVHD 53
           K Y +  RE       ++I    + +   +   ++        NG  Y   +        
Sbjct: 733 KLYGEVVREAQAGQGEKSITMLQAIA---RLRDISLCPSLGAGNGKRYSLGDPDCFFGSS 789

Query: 54  EKIKALEVIIE--KANAAPIIVAYHFNSDL------------ARLQKAFPQGRTLDKDPC 99
            ++     I++  +      ++                     ++Q              
Sbjct: 790 ARLMRTRTILDGVRTKGEKALIFVESRKIQLLLRTFLEQVYGIQVQPPINGTTQAVARQK 849

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + ++N      +L   P + G GLN+  G N ++  S  W+  +     E     R  +
Sbjct: 850 MVNQFNQASGFQVLLLSPEAAGVGLNIT-GANHVIHLSRCWNPAK-----EDQATDRAYR 903

Query: 159 AGFKRAVFVYYLIAQNT-------IDELVLQRLRTKSTIQDLLL 195
            G K+AV VY  +A +T        D  +   L+ K  +    L
Sbjct: 904 IGQKKAVTVYLPMAVDTDFPEEASFDLNLDALLQYKRDLSRSAL 947


>gi|12224998|emb|CAC21685.1| hypothetical protein [Homo sapiens]
          Length = 375

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 188 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 247

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G+NL    N+++   +  +     
Sbjct: 248 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTS-ANVVILHDIDCNP---- 302

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 303 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 350


>gi|251797976|ref|YP_003012707.1| SNF2-related protein [Paenibacillus sp. JDR-2]
 gi|247545602|gb|ACT02621.1| SNF2-related protein [Paenibacillus sp. JDR-2]
          Length = 589

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDP 98
           +   + K + +  +I++ N   +I+   +                L   +  G    K  
Sbjct: 363 QIKANTKAEKVMELIQQIND-KVIIFTEYRASQEYLLQFFRSHNILAVPYRGGMNRGKKD 421

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +  G+  +L A   + G G+NLQ+  + ++ F L W+    +Q I R+      +
Sbjct: 422 WMMDLFR-GRAQVLIAT-EAGGEGINLQF-CHNMINFDLPWNPMRVEQRIGRV-----HR 473

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            G K  V +Y L    TI+E ++  L  K  + +L++  L
Sbjct: 474 LGQKEDVKIYNLCTLGTIEEHIVNLLHEKINLFELVIGEL 513


>gi|157871832|ref|XP_001684465.1| DNA repair protein-like protein [Leishmania major]
 gi|68127534|emb|CAJ05555.1| DNA repair protein-like protein [Leishmania major strain Friedlin]
          Length = 922

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA---------- 87
            +   +  +W      K + L   I        ++V   F + L   Q            
Sbjct: 707 HLDLSDMSNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYLRCAQHWLQAAGVSCAL 766

Query: 88  FPQGRTLDKDPCTIQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +    T+ +    ++ +++        +L A  +SCG GLNL    N        W+   
Sbjct: 767 YSGSMTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLT-CANHCFLMEPSWNPGT 825

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                E   + R  + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 826 -----EEQALNRIYRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 868


>gi|9627784|ref|NP_054071.1| global transactivator-like protein [Autographa californica
           nucleopolyhedrovirus]
 gi|1170083|sp|P41447|GTA_NPVAC RecName: Full=Probable global transactivator; AltName:
           Full=ATP-dependent helicase GTA
 gi|559111|gb|AAA66672.1| global transactivator-like protein [Autographa californica
           nucleopolyhedrovirus]
          Length = 506

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 63/201 (31%), Gaps = 32/201 (15%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKANAAPI 71
            +     +K  Q+          K+  E +D                    I   +   I
Sbjct: 298 QHVLWLILKLRQICCHPYLAMHGKNILETNDCFKMDYMSSKCKRVLDLVDDILNTSNDKI 357

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEG---KIPLLFAHPAS 118
           I+   +   L   +  F Q             ++        +N+    +  +L      
Sbjct: 358 ILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKC 417

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTI 176
            G GLNL  GGN +V     W+ +     IE     R  + G  +  +VY +  +  N+I
Sbjct: 418 GGVGLNL-IGGNHIVMLEPHWNPQ-----IELQAQDRISRMGQTKNTYVYKMLNVEDNSI 471

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ + QR   K    + +   
Sbjct: 472 EKYIKQRQDKKIAFVNTVFEE 492


>gi|238494328|ref|XP_002378400.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
 gi|220695050|gb|EED51393.1| SNF2 family helicase/ATPase, putative [Aspergillus flavus NRRL3357]
          Length = 1663

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 48   WKEVHDEKIKALEVIIEKANAAPIIVAYHFN-SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
               + DE I+A + I+  +++ P +           R          +       + +N 
Sbjct: 1256 MNSIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNL 1315

Query: 107  G-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G +  +      + G GLN+  G N ++ F   +       + E   V R  + G ++ V
Sbjct: 1316 GSEKQVYLISTRAGGLGLNI-PGANRVIIFDFKFSP-----VWEEQAVGRAYRLGQQKPV 1369

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            FVY  IA  T +E++  +   K+ +   +++
Sbjct: 1370 FVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD 1400


>gi|322500523|emb|CBZ35600.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1265

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA---------- 87
             +   +  +W      K + L   I        ++V   F + L   Q            
Sbjct: 1049 HLDLSDMNNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYLRCAQHWLQAAGVSCAL 1108

Query: 88   FPQGRTLDKDPCTIQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +    T+ +    ++ +++        +L A  +SCG GLNL    N        W+   
Sbjct: 1109 YSGSMTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLT-CANHCFLMEPSWNPGT 1167

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 E   + R  + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 1168 -----EEQALNRIYRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 1210


>gi|298385406|ref|ZP_06994964.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
 gi|298261547|gb|EFI04413.1| zinc finger Ran-binding domain-containing protein 3 [Bacteroides
           sp. 1_1_14]
          Length = 502

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-------E 103
             KI      I+    +   +IV    +  +  LQK FP+  T+      I         
Sbjct: 332 KGKIAQAVDFIKTFLDSGKKLIVFCSLHEIVDELQKVFPKAVTVTGRDSAINKQASVDAF 391

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            N   + L+     + G GL L    N + F  L W   +  Q  +R       + G K 
Sbjct: 392 QNNPNVQLIICSIKAAGVGLTLTASSN-VAFIELAWTYADCCQCEDR-----AHRIGQKD 445

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  YYL+ + TID  +   +  K +I   ++N+
Sbjct: 446 NVTCYYLLGRGTIDHTIYSLIHRKKSIASEIMNS 479


>gi|168000545|ref|XP_001752976.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162695675|gb|EDQ82017.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 653

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 66/162 (40%), Gaps = 25/162 (15%)

Query: 54  EKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ---------------GRTLDK 96
            K++ +  ++++ N     +++   +   LA ++    Q                    +
Sbjct: 455 AKLRWVLDMVQQCNDAKEKLLIFSEYLYSLALIENMAVQRMKWSKGLQILRLDGSLPPQE 514

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 ++N + ++ +L A   +CG G++L  G + ++   + W+       + R  ++R
Sbjct: 515 RERVQHKFNTDPEVRVLCASIKACGEGISL-VGASRVILLEVLWNPS-----VPRQAISR 568

Query: 156 QRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLN 196
             + G +R V VY LIA  T +E  +      K  +  LL +
Sbjct: 569 AFRIGQQRKVVVYRLIAAGTYEEMNMHAAATRKEWLSRLLFD 610


>gi|170578325|ref|XP_001894363.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158599086|gb|EDP36796.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 800

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 58/217 (26%), Gaps = 31/217 (14%)

Query: 2   KQYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI--- 56
           K Y  F+   +   +  G  +   N  ++     +       +D  +       + +   
Sbjct: 182 KNYQYFKNVDDKKIEYAGSKLSLLNVLTQ---LRKCVAHPYLFDGVEPEPFKEGDHLFEV 238

Query: 57  ------KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PC 99
                     +    A    +++       L   Q          +              
Sbjct: 239 SGKFLLLDRLLTFLFAKGHRVLIFSQMTRVLDITQDYLVYKGYNYQRLDGSVRAEERFAA 298

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                    I          G       GG+ ++F    ++ +      +     R  + 
Sbjct: 299 VNHFQTNSDIFCFLLSTR-AGGLGLNLTGGDTVIFLDSDFNPQN-----DIQAAARCHRI 352

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           G  + V +  L+A+ T+++++  R   K  +   +L 
Sbjct: 353 GQTKPVKIIRLVARYTVEDMIQCRAARKLKMTQEILE 389


>gi|146092157|ref|XP_001470221.1| DNA repair protein-like protein [Leishmania infantum]
 gi|134085015|emb|CAM69416.1| DNA repair protein-like protein [Leishmania infantum JPCM5]
          Length = 1265

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKA---------- 87
             +   +  +W      K + L   I        ++V   F + L   Q            
Sbjct: 1049 HLDLSDMNNWSLQLSSKTQYLIDTIRSLPAEDKVVVFSSFLTYLRCAQHWLQAAGVSCAL 1108

Query: 88   FPQGRTLDKDPCTIQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            +    T+ +    ++ +++        +L A  +SCG GLNL    N        W+   
Sbjct: 1109 YSGSMTMKQKQSLLELFHDAARPASPRVLLATISSCGVGLNLT-CANHCFLMEPSWNPGT 1167

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 E   + R  + G  + V    LIA  TI++ + Q    K  + 
Sbjct: 1168 -----EEQALNRIYRIGQTKPVTFTKLIADGTIEQNISQLCDRKRALS 1210


>gi|18606477|gb|AAH23186.1| Smarca4 protein [Mus musculus]
          Length = 563

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
             K + L+ I+ K  A    +++     S +  ++  F                +     
Sbjct: 28  SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 87

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           ++ +NE      +      + G GLNLQ   + ++ F   W+  +     +     R  +
Sbjct: 88  LKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQAQDRAHR 141

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G +  V V  L   N+++E +L   + K  +   ++ A
Sbjct: 142 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA 180


>gi|328721366|ref|XP_001942895.2| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon
           pisum]
          Length = 1045

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 97  DPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + +N+    K+ LL     +   G+NL  G N ++ F + W+   + Q I R+  
Sbjct: 803 REDFCERFNDITNTKMRLLLLSTKAFNLGINL-IGANRVIIFDVTWNPSLNVQSIFRV-- 859

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + G K+  ++Y LI++ T+++ + +R  +K +    +++ 
Sbjct: 860 ---FRFGQKKPCYIYRLISEGTMEQKIYERQISKLSTAFRVVDE 900


>gi|322830312|gb|EFZ33384.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 1086

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 12/156 (7%)

Query: 51   VHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +H  + K  + II  +   +   ++    S          +     +     +   + KI
Sbjct: 888  LHSIREKKEKAIIFSQYVGSQDFISRTLTSFDIVSSTIRGRDCHERRRRTIEKFREDEKI 947

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
              L        +GL+     N ++ +  WW+ +     +E   + R  +    RAV VY 
Sbjct: 948  TCLLLSTQIGAYGLDFTA-ANHVILWDSWWNPQ-----VESQAIARAYRRNQTRAVIVYR 1001

Query: 170  LIA--QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            L +  ++TI   VL+    K  +   ++N      +
Sbjct: 1002 LASEFEDTI---VLKTQIRKLALFRCIMNEEASRAV 1034


>gi|121713876|ref|XP_001274549.1| DNA excision repair protein (Rad5), putative [Aspergillus clavatus
            NRRL 1]
 gi|119402702|gb|EAW13123.1| DNA excision repair protein (Rad5), putative [Aspergillus clavatus
            NRRL 1]
          Length = 1252

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    + +     WW        IE   + R  + G  R V V   
Sbjct: 1149 VLLISLRAGGVGLNLT-VASNVFMMDPWWSFA-----IEAQAIDRVHRMGQLRDVAVTRF 1202

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            I +++I+  +LQ    K  I   L
Sbjct: 1203 IVKDSIEGRMLQVQERKMNIAGSL 1226



 Score = 35.1 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 3/46 (6%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEK 46
            Y + +R    +++   +        ++ ++  Q     +    + 
Sbjct: 827 IYTRAKRTFNDNVEAGTLLKSFSTIFAQILRLRQTCCHPILTRNKT 872


>gi|323303978|gb|EGA57758.1| Rad5p [Saccharomyces cerevisiae FostersB]
          Length = 1169

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 19/176 (10%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +   K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 991  SKSSKITALXKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1039

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1040 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1098

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W        +E   + R  + G   +V V   I Q++I+E +L+    K TI + +
Sbjct: 1099 WSPS-----MEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149


>gi|315050848|ref|XP_003174798.1| transcription termination factor 2 [Arthroderma gypseum CBS 118893]
 gi|311340113|gb|EFQ99315.1| transcription termination factor 2 [Arthroderma gypseum CBS 118893]
          Length = 1164

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+I+      ++     Q ++R
Sbjct: 1044 MSLKQRNASIETFSTDDSVTILLVTIGAGGVGLNLTA-GSIVYIMEPQYNPAAIAQAVDR 1102

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G KR V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1103 V-----HRIGQKREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1152


>gi|302652102|ref|XP_003017911.1| hypothetical protein TRV_08077 [Trichophyton verrucosum HKI 0517]
 gi|291181496|gb|EFE37266.1| hypothetical protein TRV_08077 [Trichophyton verrucosum HKI 0517]
          Length = 1177

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N +     WW        +E   + R  + G  R V V   
Sbjct: 1074 VLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVKVSRF 1127

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +N+I+  +L+    K  I   L
Sbjct: 1128 VVKNSIEGRILKIQERKMMIAGSL 1151


>gi|302497381|ref|XP_003010691.1| hypothetical protein ARB_03393 [Arthroderma benhamiae CBS 112371]
 gi|291174234|gb|EFE30051.1| hypothetical protein ARB_03393 [Arthroderma benhamiae CBS 112371]
          Length = 1177

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N +     WW        +E   + R  + G  R V V   
Sbjct: 1074 VLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVKVSRF 1127

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +N+I+  +L+    K  I   L
Sbjct: 1128 VVKNSIEGRILKIQERKMMIAGSL 1151


>gi|313239189|emb|CBY14147.1| unnamed protein product [Oikopleura dioica]
          Length = 522

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +  +++    +   +  I +          GL L      ++ F  +W+  +     +  
Sbjct: 233 QPKERNNKVHRFQTDSTIKVCLLTTGVGAVGLTLTA-ATRVIVFDPYWNPSK-----DDQ 286

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            V R  + G K AV V+ LI   TI+E +  +   K +I 
Sbjct: 287 AVDRAYRIGQKNAVVVFRLITCETIEEKIYSKQLFKKSII 326


>gi|224013532|ref|XP_002296430.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968782|gb|EED87126.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 119

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 97  DPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               +  +N+    + ++     + G GL L  G +  + F   W+        +   + 
Sbjct: 36  RQQKVDAFNDKESNVDIMLLSTKAAGVGLTL-NGADRAIIFDPSWNPST-----DAQAID 89

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           R  + G  + V VY +I   T++E + ++ 
Sbjct: 90  RCYRIGQLKNVTVYRMICAGTVEEKMYEKQ 119


>gi|224541746|ref|ZP_03682285.1| hypothetical protein CATMIT_00918 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525350|gb|EEF94455.1| hypothetical protein CATMIT_00918 [Catenibacterium mitsuokai DSM
           15897]
          Length = 716

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 37  NGAVYYDEEKHWKEVH-DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           N            ++H   K   +  II++       +IV   +   + ++ K      T
Sbjct: 521 NHHEIRQVSWRVDDLHDSSKACRMLEIIQEAKEEGRKVIVFSFYLDTIRKISKLLGNQCT 580

Query: 94  --------LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I E+       +L +   + G GLN+Q   ++++           
Sbjct: 581 EIINGSVSPKHRQEIIDEFESAPAGSVLLSQIMAGGTGLNIQS-ASVVIICEPQIKPS-- 637

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              IE   ++R  + G  R V VY L+  +TIDE +   L  K+ + +   +
Sbjct: 638 ---IESQAISRAYRMGQSRNVLVYRLLCNDTIDERITDILTRKTNVFNAFAD 686


>gi|260949761|ref|XP_002619177.1| hypothetical protein CLUG_00336 [Clavispora lusitaniae ATCC 42720]
 gi|238846749|gb|EEQ36213.1| hypothetical protein CLUG_00336 [Clavispora lusitaniae ATCC 42720]
          Length = 187

 Score = 70.2 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 24/177 (13%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIKALEVIIEKANAAPIIVAYHF 77
               S   +   + +      E+    +V         +  +E  ++  +         +
Sbjct: 1   MTPISLQQRLKLVLSHLRALKEQSPGFQVVVFSQFSSYLDLIENELKLLDGGGETEFSVY 60

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             D             L++    +Q++     EGKI +L     + G GLNL    N   
Sbjct: 61  KFDGRL---------NLNERDKILQQFVQKSEEGKITVLLLSLKAGGVGLNLT-CANKAF 110

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               WW      Q I+RI      + G ++ V V   + +N+I+  +L+    K  +
Sbjct: 111 MMDPWWSPSIEDQAIDRI-----HRIGQEQNVKVTRFVVKNSIETKMLKIQERKRMM 162


>gi|23099360|ref|NP_692826.1| helicase [Oceanobacillus iheyensis HTE831]
 gi|22777589|dbj|BAC13861.1| helicase (Snf2/Rad54 family) [Oceanobacillus iheyensis HTE831]
          Length = 556

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------- 90
             +              K + +  +I+      +IV   + +    LQ    Q       
Sbjct: 335 HPLKQIISDLESLEQHIKAEQMVKLIQSLGDEKVIVFTEYRATQYYLQWFLQQHGITSVP 394

Query: 91  ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G    K     Q + +    +L A   + G G+NLQ+  + ++ + L W+    +Q 
Sbjct: 395 FRGGFKRGKKDWMKQLFRD-HAQVLIAT-EAGGEGINLQF-CHNMINYDLPWNPMRLEQR 451

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           I RI      + G ++ V +Y L+ +NTI+E +L  L  K  +   ++  L  
Sbjct: 452 IGRI-----HRFGQEKDVQIYNLVIKNTIEEHMLSLLYEKIDLFQNVIGNLDA 499


>gi|328849333|gb|EGF98516.1| hypothetical protein MELLADRAFT_95635 [Melampsora larici-populina
           98AG31]
          Length = 177

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            ++      T ++         +  +        + G GLN+    + +      W+ + 
Sbjct: 35  YRQLHGDQSTFERTSQLNSFTKDPNVEAFVVSIEAGGVGLNMT-CADEVYLMDAHWNPQV 93

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-------N 196
            QQ ++R+      + G  + V V++++   +I++ +    + K+ +   ++        
Sbjct: 94  VQQAVDRL-----HRIGQAKPVRVFHVVTGQSIEQHLYNVQKRKAALAKRVITLTVPTEE 148

Query: 197 ALKKETIHV 205
             K E + V
Sbjct: 149 LEKAEALRV 157


>gi|331700042|ref|YP_004336281.1| helicase domain-containing protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954731|gb|AEA28428.1| helicase domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 716

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F     R      +     +         +  + +      + G GLNLQ   +I++   
Sbjct: 570 FTRQGVRFSSIRGEQSRTARQQNVDAFVEDPDVAIAVCSLTAAGVGLNLQVASDIVLAEL 629

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W   E+         + R  + G    V  + +IA  TID  + + +  K  +    L+
Sbjct: 630 SWTAAEQT------QAIDRCHRIGQTEPVTAWRIIAAQTIDARIAELIDDKGNLAAQALD 683

Query: 197 A 197
            
Sbjct: 684 G 684


>gi|159120058|ref|XP_001710245.1| Transcription regulatory protein SNF2 [Giardia lamblia ATCC 50803]
 gi|157438363|gb|EDO82571.1| Transcription regulatory protein SNF2 [Giardia lamblia ATCC 50803]
          Length = 2079

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
              K++ L+ I+ K +     +++   F                    F            
Sbjct: 1094 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRQYKFVRFDGSVKDVDRNSM 1153

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N       +      +  HGLNLQ   + ++ F   ++        ++    R  +
Sbjct: 1154 IRGYNREDSKDFVFLLSTRAASHGLNLQT-ADTVIIFDCDYN-----GTYDQQAQDRCYR 1207

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1208 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1246


>gi|302505719|ref|XP_003014566.1| SNF2 family helicase/ATPase, putative [Arthroderma benhamiae CBS
            112371]
 gi|291178387|gb|EFE34177.1| SNF2 family helicase/ATPase, putative [Arthroderma benhamiae CBS
            112371]
          Length = 1862

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKT-VKCLQL--ANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +   +++G+        S+   K   +   +        +   ++ DE IKA + I+ 
Sbjct: 1276 VEDDVLEIEGQTAITDEVVSQFEQKFKDIKDLDSPENSHRTQMVGQIVDESIKAGDKILI 1335

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPASCGHGL 123
             +     +       +    +     G+T         +++      +      +   GL
Sbjct: 1336 FSGYLHTLSYLGSMLEARGHKYCRLDGKTPIATRQAATRDFTASDAHVYLISTKAGALGL 1395

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            N+  G N ++ F   ++        E   + R  + G  + VFVY  +   T +EL+ ++
Sbjct: 1396 NI-IGANRVIIFESEYNPT-----WEEQAIGRAYRLGQTKDVFVYRFVMGGTFEELIHEK 1449

Query: 184  LRTKSTIQDLLLN 196
               K  +    ++
Sbjct: 1450 GVFKKNMALRAID 1462


>gi|159164911|gb|ABV80240.2| mutant required to maintain repression 1 [Zea mays]
          Length = 1435

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
             +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 1202 PMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQFIQPLELIKEHLRKFFKWREGK 1261

Query: 88   ---FPQGRTLDK-DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                  G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 1262 EILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRACCEGISLT-GASRIVLLDVVWNP 1320

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 ++ R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 1321 -----VVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 1370


>gi|126433435|ref|YP_001069126.1| SNF2-related protein [Mycobacterium sp. JLS]
 gi|126233235|gb|ABN96635.1| SNF2-related protein [Mycobacterium sp. JLS]
          Length = 1122

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAF 88
            +   +    + +   K++ L  I+E+   N   ++V  HF             R+    
Sbjct: 680 FMAMRQASMRQGLKSSKMQRLIEIVEEAEDNGRRVVVFSHFLDVLSDVARHMPGRVVGPL 739

Query: 89  PQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +    + +++  +   +L A   + G GLN+Q   +++V              
Sbjct: 740 TGSVAASQRQVMVDDFSAAQKGAVLVAQIVAGGVGLNIQA-ASVVVICEPQLKPTT---- 794

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            E   + R  + G   +V V+ L++   +D+ V + L TK  + + 
Sbjct: 795 -EWQAIARAHRMGQLESVQVHRLLSDEGVDQRVREILATKKLLFES 839


>gi|326478744|gb|EGE02754.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1188

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+++      ++     Q ++R
Sbjct: 1068 MSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPAAIAQAVDR 1126

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G  R V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1127 V-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1176


>gi|326469727|gb|EGD93736.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1188

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+++      ++     Q ++R
Sbjct: 1068 MSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPAAIAQAVDR 1126

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G  R V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1127 V-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1176


>gi|302653441|ref|XP_003018547.1| hypothetical protein TRV_07448 [Trichophyton verrucosum HKI 0517]
 gi|291182199|gb|EFE37902.1| hypothetical protein TRV_07448 [Trichophyton verrucosum HKI 0517]
          Length = 1186

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 92   RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +   +I+ +  +  + +L     + G GLNL   G+++      ++     Q ++R
Sbjct: 1066 MSLKQRNASIETFSTDNNVTILLVTIGAGGVGLNLTA-GSMVYIMEPQYNPAAIAQAVDR 1124

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIH 204
            +      + G  R V     I  ++I+E + +  + K  + D+ LN  + +  + 
Sbjct: 1125 V-----HRIGQTREVTTIQFIMNDSIEEKITELAKRKQKLADMSLNRKMDRRELQ 1174


>gi|302063910|ref|ZP_07255451.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           K40]
          Length = 331

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ +  ++ + +    +I
Sbjct: 143 EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAELDVDDKVI 187

Query: 73  VAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +   +   +A L++   +                +         +    +     ++ G 
Sbjct: 188 LFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGT 247

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 248 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAEDTIDQQLW 301

Query: 182 QRLRTKSTIQDLLLN 196
           Q L  K  +   L++
Sbjct: 302 QMLMDKRALASDLID 316


>gi|258574015|ref|XP_002541189.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901455|gb|EEP75856.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 256

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKI 109
             +  +    + +   F   +  L     +               +    I+E+  +  +
Sbjct: 79  NWLTNSPGTKVTIFTQFRGMVRILSNMCIKQGWGHTTLTGNAPPSERHRDIEEFRVDPTV 138

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L +   + G GLNL    +  +   LWW+     + IE+    R  + G  + V +  
Sbjct: 139 RVLISSLKAGGTGLNLT-MADKCILVDLWWN-----EAIEQQAFCRLFRYGQTKEVEIVR 192

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +  +N+ID+ +      KST  +  + 
Sbjct: 193 ISVKNSIDDRIQLIQHEKSTSIEKTIG 219


>gi|328868528|gb|EGG16906.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1268

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ F   W+        +     R  + G K+ V +Y L+   TI+E +  R   K  + 
Sbjct: 879 VILFDPDWNPST-----DTQARERVYRIGQKKNVTIYRLMTTGTIEEKIYHRQIYKQFLS 933

Query: 192 DLLLNALKKE 201
           + +L   ++ 
Sbjct: 934 NKILKDPRQR 943


>gi|126323929|ref|XP_001378454.1| PREDICTED: similar to mDomino [Monodelphis domestica]
          Length = 3065

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
              +  Q+ N  V    E    +    K++AL ++++K  +    +++       L  L+ 
Sbjct: 1760 LQQLHQITNLKVLQFPELRLVQYDSGKLEALAILLQKLKSEGRRVLILSQMILMLDILEM 1819

Query: 87   AFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                               +    ++ +N + +I        S   G+NL    + +VF+
Sbjct: 1820 FLDFHYLTYVRVDENANSEQRQELMKSFNKDKRIFCAILSTHSRSTGINL-VEADTVVFY 1878

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1879 DNDLNP-----VMDAKAQEWCDRIGRSKDIHIYRLVSGNSIEEKLLK 1920


>gi|331225801|ref|XP_003325571.1| hypothetical protein PGTG_07404 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309304561|gb|EFP81152.1| hypothetical protein PGTG_07404 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 371

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K +   ++  ++     I+ Y    D     +        ++     +   +    +  A
Sbjct: 57  KAQFKVLLFSQSTKMMDILEYWLQQDFPEFVRLDGSVAIRERFKRVDEFQTDPSKFIFLA 116

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GLNL     ++      W+        +   + R  + G KR V    LI+  
Sbjct: 117 SIKAAGVGLNLTAANKVV----PSWNPSH-----DAQAMDRVVRIGQKREVECIRLISSG 167

Query: 175 TIDELVLQRLRTKSTIQD 192
           T +EL+  R   K  + +
Sbjct: 168 TTEELIYHRQLYKQGLSE 185


>gi|23577840|ref|NP_703032.1| global transactivator [Rachiplusia ou MNPV]
 gi|23476485|gb|AAN28032.1| global transactivator [Rachiplusia ou MNPV]
          Length = 505

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 31/200 (15%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKANAAPI 71
            +     +K  Q+         +K+  E +                     I   +   I
Sbjct: 298 QHVLWLILKLRQICCHPYLAMHDKNILETNGCFKMDYMSSKCKRVLDLVDNILNTSDDKI 357

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKI--PLLFAHPASC 119
           I+   +   L   +  F Q             ++        +N+      +L       
Sbjct: 358 ILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDATNTHRILLLSIKCG 417

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTID 177
           G GLNL  GGN +V     W+ +     IE     R  + G  +   VY +  +  N+I+
Sbjct: 418 GVGLNL-IGGNHIVMLEPHWNPQ-----IELQAQDRISRMGQTKNTHVYKMLNVEDNSIE 471

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           + + QR   K    + +   
Sbjct: 472 KYIKQRQDKKIAFVNTVFEE 491


>gi|328871601|gb|EGG19971.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1331

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++    +  N+ K  +      + G GL L    +++VF  L+W          R 
Sbjct: 876 PPAVREANVTRFQNQPKCQVALLSITAAGTGLTLTA-SSLVVFAELYWTPGVL-----RQ 929

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              R  + G K  V ++YLI + T+D+ +   +  K  +    L+  +++ +
Sbjct: 930 AEDRVHRIGQKNEVNIHYLIGKGTLDDRIWPMICNKLEVIGETLDGQEEKLL 981


>gi|46121223|ref|XP_385166.1| hypothetical protein FG04990.1 [Gibberella zeae PH-1]
          Length = 1057

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSD------------LARLQKAFPQGRTLDKDPCTIQEWNE 106
           +   ++ +    IIV   F               L  L           K     +  N 
Sbjct: 841 ILTWLQNSPKDKIIVFIEFTITAKALGCILEKLGLKFLYYNQIASTPARKVKAYNEFQNN 900

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             I +L A     G GLNLQ   N+++   +W++    Q         R  + G K+   
Sbjct: 901 SDIRILVASIKCGGTGLNLQ-IANLVIIDDIWFNTTVEQ-----QAFGRVNRIGQKKETK 954

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  ++A+ T+DE ++     K+ I   +L  
Sbjct: 955 LVRILARGTLDERLVMLQDAKAAIVSNVLQD 985


>gi|237643583|ref|YP_002884273.1| GTA [Bombyx mandarina nucleopolyhedrovirus]
 gi|229358129|gb|ACQ57224.1| GTA [Bombyx mandarina nucleopolyhedrovirus]
          Length = 506

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 32/201 (15%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKANAAPI 71
            +     +K  Q+          ++  E  D                    I   +   I
Sbjct: 298 QHVLWLILKLRQICCHPYLAMHGRNLLETDDCFKMDYMSSKCKRVLDLVDDILNTSDDKI 357

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN---EGKIPLLFAHPAS 118
           I+   +   L   +  F Q             ++        +N   + +  +L      
Sbjct: 358 ILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILADTTFNNAADTQHRILLLSIKC 417

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTI 176
            G GLNL  GGN +V     W+ +     IE     R  + G  +  +VY +  +  N+I
Sbjct: 418 GGVGLNL-IGGNHIVMLEPHWNPQ-----IELQAQDRISRMGQTKNTYVYKMLNVEDNSI 471

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ + QR   K    + +   
Sbjct: 472 EKYIKQRQDKKIAFVNTVFEE 492


>gi|38233941|ref|NP_939708.1| hypothetical protein DIP1355 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200202|emb|CAE49883.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 884

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA--------FPQGRTLDKDPCTI 101
              K++ L  I+++A      +I+  +F S L R++K                 +    I
Sbjct: 702 DCAKMERLIDIVKEAESAGKNVIIFSYFRSVLERIEKDLGEYVAGSITADVPPQRRQQLI 761

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            E       +L     + G GLN+Q   ++++F                  + R  + G 
Sbjct: 762 DELGNTGRHVLLLQIVAGGVGLNIQK-ASVVIFTEAQVKPTLVD-----QAIARAHRMGQ 815

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +  V VY L   +T+DE +   L  K  + D
Sbjct: 816 RDPVTVYRLFGADTVDERLTALLEHKRAVFD 846


>gi|9630851|ref|NP_047448.1| GTA [Bombyx mori NPV]
 gi|3745870|gb|AAC63717.1| GTA [Bombyx mori NPV]
          Length = 506

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 32/201 (15%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE-----------VIIEKANAAPI 71
            +     +K  Q+          ++  E +D                    I   +   I
Sbjct: 298 QHVLWLILKLRQICCHPYLAMHGRNLLETNDCFKMDYMSSKCKRVLDLVDDILNTSDDKI 357

Query: 72  IVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWN---EGKIPLLFAHPAS 118
           I+   +   L   +  F Q             ++        +N   + +  +L      
Sbjct: 358 ILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSIKC 417

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNTI 176
            G GLNL  GGN +V     W+ +     IE     R  + G  +  +VY +  +  N+I
Sbjct: 418 GGVGLNL-IGGNHIVMLEPHWNPQ-----IELQAQDRISRMGQTKNTYVYKMLNVEDNSI 471

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           ++ + QR   K    + +   
Sbjct: 472 EKYIKQRQDKKIAFVNTVFEE 492


>gi|71410768|ref|XP_807662.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
 gi|70871713|gb|EAN85811.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1060

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNE-GKIPLLFAH 115
            ++         +   +  D +  +           +  +   T++ +N      +L   
Sbjct: 652 KMLSLFEGIIAEMNRRWQQDGSLPRPIRFCRLDGNSSGAERENTLRSFNSLRGADVLLLS 711

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+N+      ++     ++  +     +R  + R  + G  R VFVY L+   T
Sbjct: 712 MKAGGVGINITS-ATRVILADSGFNPAD-----DRQAIGRAYRYGQTRPVFVYRLVCYQT 765

Query: 176 IDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           ++  + Q+   K  +   ++   +LK++ +
Sbjct: 766 LEHRMFQQKVAKEWLFHTIVEEASLKRDAL 795


>gi|164425263|ref|XP_963002.2| hypothetical protein NCU06190 [Neurospora crassa OR74A]
 gi|157070856|gb|EAA33766.2| predicted protein [Neurospora crassa OR74A]
          Length = 1893

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 93   TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             + +    ++E+N    + +      + G GLN+  G N +V F   +   E Q      
Sbjct: 1378 PVSQRQAAVKEFNAVDSLDVYLISTRAGGVGLNI-PGANRVVLFDFGFTPAEEQ-----Q 1431

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V R  + G ++ VFVY+L    T +  +      K  + + +++  K
Sbjct: 1432 AVGRAYRIGQEKKVFVYHLKVGGTYETAIHNLAIFKRQLSERVVDKKK 1479


>gi|167463289|ref|ZP_02328378.1| helicase (Snf2/Rad54 family) protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384854|ref|ZP_08058515.1| RNA polymerase-associated helicase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150323|gb|EFX43825.1| RNA polymerase-associated helicase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 599

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTI 101
            + K + +  +I       +I+   + +          D       +  G    K    +
Sbjct: 374 SNTKAEKVMELIRNIQ-EKVIIFTEYRASQEYLLKYLKDRGITAVPYRGGMNRGKKDWMM 432

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +   +  +L A   + G G+NLQ+  + ++ F L W+    +Q I R+      + G 
Sbjct: 433 DLFRN-RAQVLVAT-EAGGEGINLQF-CHHIINFDLPWNPMRVEQRIGRV-----HRLGQ 484

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              V +Y L  Q TI+E +L  L  K  + + ++  L
Sbjct: 485 TNDVKIYNLSTQGTIEEHILNLLHEKINMFEAVIGEL 521


>gi|123477453|ref|XP_001321894.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121904729|gb|EAY09671.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1354

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 34/209 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------------DEKIKALEV 61
            +    ++  + ++   K   +       +  + +                  K   L  
Sbjct: 593 QIDESTVDTSHESASIQK---VCCHPFLIEGAEEYYTKKFNLSRLELLTQLSTKFVWLSK 649

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGK 108
           ++ +   +   +++       L  L++     +  +           K     +      
Sbjct: 650 VLAELKRDNHKVLIFSQKVQLLHILREFCMLSQYNNELLIGEMSDIEKSEAIDRYSKSPD 709

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      +   GLNL    +  + F   W+ +      +     R  + G  + V V 
Sbjct: 710 SFVFLISTRAGSEGLNLT-VADTAIIFDPDWNPQN-----DLQAQARVHRIGQTQKVDVV 763

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            LI   T +  +  R + K  +   LL  
Sbjct: 764 RLITYQTYEHEMFVRAQRKLGLWLDLLGE 792


>gi|170585925|ref|XP_001897732.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
 gi|158594834|gb|EDP33412.1| SNF2 family N-terminal domain containing protein [Brugia malayi]
          Length = 1150

 Score = 69.8 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 63/243 (25%), Gaps = 70/243 (28%)

Query: 25   SASKTVKCLQLANGAVY-----------------YDEEKHWKEVHDEKIKALEVIIEKA- 66
              +  ++  Q                         ++     +         E  + +  
Sbjct: 845  VLTLLMRLRQACVHFALINQAVDMEALQMLGVEEDEDAGMLSKCFSNISLLDEKALTEKL 904

Query: 67   ----------------------------------NAAPIIVAYHFNSDLARLQKAFPQGR 92
                                                   ++   + S L  L+    + +
Sbjct: 905  LGEDGNKQMEQLFQKTFISTKIKKLFEQVDYALSCGDKCVIVSQWTSLLNILEYHLERKK 964

Query: 93   TLD----------KDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             L                   +N  +    ++       G       GGN L    L W+
Sbjct: 965  ILYTSINGKVSSSDRQNRANSFNMMDSGPHVMLLSLT-AGGVGLNLVGGNHLFLVDLHWN 1023

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                QQ  +RI      + G  + VF++ L+   TI+E VL   R K T+   +L+ +  
Sbjct: 1024 PALEQQACDRI-----YRIGQTKNVFIHKLVCLETIEERVLALQRIKQTLAKDVLDGVAS 1078

Query: 201  ETI 203
            + +
Sbjct: 1079 KKL 1081


>gi|322700580|gb|EFY92334.1| DNA repair protein rad-5 [Metarhizium acridum CQMa 102]
          Length = 1138

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK-IP 110
            + ++      +V   F S L+ ++                         ++++ E K   
Sbjct: 994  LRKERPHMKSVVFSQFTSFLSLIEPALARINVKFLRLDGSMAQKARAAVLEDFTEKKGFM 1053

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL      +     WW        +E   + R  + G +  V +   
Sbjct: 1054 VLLISLRAGGVGLNLTS-AGRVFMMDPWWSFA-----VEAQAIDRVHRLGQEDEVVIKRF 1107

Query: 171  IAQNTIDELVLQRLRTKSTI 190
            I + +++E +L+    K  +
Sbjct: 1108 IVKQSVEERMLRVQERKKFM 1127


>gi|126667815|ref|ZP_01738782.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
 gi|126627763|gb|EAZ98393.1| Superfamily II DNA/RNA helicase [Marinobacter sp. ELB17]
          Length = 877

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +     +   + K  +      + G G+ L      ++F  L W               
Sbjct: 683 KRQAEADRFQADPKCTVFLGSIGAAGVGITLTA-ATKVLFGELDWVPGIVS-----QAED 736

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G    V V++ +   +ID  +++RL  K  + D  L+  K
Sbjct: 737 RAHRIGQLDNVLVWHAVVDGSIDARMVRRLIEKQKVLDSALDDEK 781


>gi|239615480|gb|EEQ92467.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1091

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 92   RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +    + E+ +   I +L A   + G GLNL   G+ +      ++     Q ++R
Sbjct: 970  MSLKQRNAALDEFRDNNDITVLLATLGAGGVGLNLTS-GSRVYIMEPQYNPAAIAQAVDR 1028

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +      + G  R V     I +++I+E + +  + K  + D+ LN  + +   +
Sbjct: 1029 V-----HRLGQTREVTTIQFIMKDSIEEKIAELAKKKQQMADMSLNRSRLDRREL 1078


>gi|194288961|ref|YP_002004868.1| hypothetical protein RALTA_A0827 [Cupriavidus taiwanensis LMG 19424]
 gi|193222796|emb|CAQ68799.1| conserved hypothetical protein, putative DNA-binding ATP-binding
            helicase [Cupriavidus taiwanensis LMG 19424]
          Length = 1097

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 43/229 (18%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEV------HDE 54
            + Y          L+ +     ++         Q+ +    + E                
Sbjct: 866  RLYE----GALATLREQRDTNPSAQLQALHAIRQICSDPHGFAEAGTRDLAIERLVNESP 921

Query: 55   KIKALEVIIE-----KANAAPIIVAYHFNSDLARLQK----------------AFPQGRT 93
            K+  L   ++     ++    +IV   F      LQ+                     R 
Sbjct: 922  KMGWLIERLKALAAERSGNHKVIVFCEFRELQLLLQRVIAAFFGFAPDIVNGDTSADPRV 981

Query: 94   LDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                   I  + +      +   P + G G+N+Q   N +V F+  W+  +     E   
Sbjct: 982  AHSRQRLIDRFQDQPGFHAIILSPLAVGFGVNIQA-ANHVVHFTRTWNPAK-----EDQA 1035

Query: 153  VTRQRQAGFKRAVFVYY--LIAQN--TIDELVLQRLRTKSTIQDLLLNA 197
              R  + G  R V VYY  +I+    + D  +   L  K  +   +LN 
Sbjct: 1036 TARAYRIGQTRTVTVYYPGVISAQFPSFDVRLDALLGRKRELAADMLNG 1084


>gi|198429753|ref|XP_002130424.1| PREDICTED: similar to SWI/SNF-related, matrix-associated
           actin-dependent regulator of chromatin, subfamily a,
           containing DEAD/H box 1 [Ciona intestinalis]
          Length = 747

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 66/178 (37%), Gaps = 21/178 (11%)

Query: 32  CLQLA--NGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA 87
              L   + A+   + +    +   K+  L+ ++   K+    +++   F   +  L+  
Sbjct: 556 LHNLCLSSRALSTMKLQESSLIDSGKMAHLDEMLPKFKSQNKRVLLFSQFTMMMDILEVY 615

Query: 88  F----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           + +    I  +N +  + +      + G G+NL    +++V   
Sbjct: 616 LKLRGHRFLRLDGQTPVQERLSYIDSFNKDDSVFIFLLSTKAGGLGINLTS-ASVVVLHD 674

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  +        ++    R  + G  + V V  LI+ N+++E + +  ++K  ++  +
Sbjct: 675 IDCNP-----YNDKQAEDRCHRLGQTKKVEVVKLISVNSVEEGMFKTAQSKLQLEKDM 727


>gi|71297047|gb|AAH35183.1| C9orf102 protein [Homo sapiens]
 gi|119613042|gb|EAW92636.1| RAD26L hypothetical protein, isoform CRA_b [Homo sapiens]
          Length = 523

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 331 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 375

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+      
Sbjct: 376 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPAN--- 431

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +   + R  + G  R V V  LI+  T++E++  R   K  +  +++ +   +
Sbjct: 432 --DLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 484


>gi|311030891|ref|ZP_07708981.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 565

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
           + K + +  +I+K     +I+   + +    LQ             +G         ++E
Sbjct: 360 NSKAEKVLELIQKVKD-KVIIFTEYRATQMYLQWFLKQNGITSVPFRGGFKRGKKDWMRE 418

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             +  + +L A   + G G+NLQ+  N ++ F L W+    +Q I RI      + G +R
Sbjct: 419 LFKNHVQVLIAT-EAGGEGINLQF-CNHIINFDLPWNPMRLEQRIGRI-----HRLGQER 471

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            V +Y     NT++E +L+ L  K  + + ++  L
Sbjct: 472 DVNIYNFATNNTVEEHILKLLYEKINLFERVIGEL 506


>gi|296128669|ref|YP_003635919.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020484|gb|ADG73720.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 737

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 24/201 (11%)

Query: 8   QRELYCDLQGENIEAF--NSASKTVKCLQ----LANGAVYYDEEKHWKEVHDEKIKALEV 61
           +R    +L+  + +A   N  +   +  Q    LA            K V   K   +  
Sbjct: 506 RRVAAAELKDSSSKANGENVFTMVRRIGQAKAGLAADYAAQLARNVGKVVFFAKHVDVMD 565

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
             EK  A   I       D           +T       +  +  + ++ ++     + G
Sbjct: 566 HAEKTFAERGISYTSIRGD-----------QTPRARAKAVAAFTEDPEVQIVVCSLMAAG 614

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N+++    W D E+         + R  + G +  V  + +IA  TID  +
Sbjct: 615 VGLNLQVASNLVLAELSWTDAEQT------QAIDRIHRIGQEEPVTAWRVIAAQTIDARI 668

Query: 181 LQRLRTKSTIQDLLLNALKKE 201
            + + +KS +    L+   ++
Sbjct: 669 AELIDSKSGLAARALDGASED 689


>gi|169597871|ref|XP_001792359.1| hypothetical protein SNOG_01727 [Phaeosphaeria nodorum SN15]
 gi|111070256|gb|EAT91376.1| hypothetical protein SNOG_01727 [Phaeosphaeria nodorum SN15]
          Length = 861

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 17/171 (9%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           +    +       L       D  +++             +++     P +  Y F +  
Sbjct: 698 SAKVLALLRNL--LTAHTPINDINENYIPAKSVVFSHSTRMLDLIQ--PALSHYQFRT-- 751

Query: 82  ARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      +L+     ++E+  +    ++ A   S G GL+L    N +      W+
Sbjct: 752 ----CRIDGSTSLEGRSNVLREFSEDAHCAVMLATIGSAGEGLDLTA-ANHVHIIEPHWN 806

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                Q ++RI      + G KR VFV   I   +I+  +    + K  +Q
Sbjct: 807 PMAEAQAVDRI-----YRIGQKREVFVTRYIVPKSIETYIQWVQQQKLKLQ 852


>gi|116191639|ref|XP_001221632.1| hypothetical protein CHGG_05537 [Chaetomium globosum CBS 148.51]
 gi|88181450|gb|EAQ88918.1| hypothetical protein CHGG_05537 [Chaetomium globosum CBS 148.51]
          Length = 1040

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 25/187 (13%)

Query: 32  CLQLANGAVYYDEEKHWK-------EVHDEKIKALEVII--EKANAAPIIVAYHFNSDL- 81
             ++ N     D     K       E    K+  ++ ++   K      ++       L 
Sbjct: 711 LRKICNHPDLLDPRLKNKPSYAWGDESKSGKMAVVKSLLPMWKRLGHKTLLFCQGVQMLD 770

Query: 82  ----------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
                                 + +    + ++N + ++ +        G G+NL  G N
Sbjct: 771 VIEAFIQRLDNIKYIRMDGKTPVKQRQTLVDQFNTDPELDVFLLTTKVGGLGVNLT-GAN 829

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDE--LVLQRLRTK 187
            ++ F   W+     Q  ER     Q++      +  ++ L + ++ +    +LQ+   +
Sbjct: 830 RVIIFDPDWNPSTDVQARERAWRLGQKREQTTFNLNDLHDLFSLSSYEHDRKMLQQEANR 889

Query: 188 STIQDLL 194
              Q  L
Sbjct: 890 IAAQAAL 896


>gi|15079181|ref|NP_149635.1| 172L [Invertebrate iridescent virus 6]
 gi|82013408|sp|O55764|172L_IIV6 RecName: Full=Putative helicase 172L
 gi|15042550|gb|AAA62412.2| 172L [Invertebrate iridescent virus 6]
          Length = 606

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +++     D    +     G T ++     Q  N+     LF        GLNL    + 
Sbjct: 463 LLSEAIKEDYPNFKFVQVDGDTKNRSELFDQFKNDINTQGLFLTYKVGSEGLNLTEATHC 522

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +     W +       +      R  + G  + V+V+ +I + +I+E +++  + K  + 
Sbjct: 523 ICIEPWWTNA------VHNQAKARLWRTGQTKQVYVHNVIIEGSIEEKIVEICKGKDDMA 576

Query: 192 DLLLNALKK 200
              L   ++
Sbjct: 577 ASYLEGKER 585


>gi|327298855|ref|XP_003234121.1| DNA repair protein Rad5 [Trichophyton rubrum CBS 118892]
 gi|326464299|gb|EGD89752.1| DNA repair protein Rad5 [Trichophyton rubrum CBS 118892]
          Length = 1027

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL    N +     WW        +E   + R  + G  R V V   
Sbjct: 924  VLLISLRAGGVGLNLT-VANHVFMMDPWWSFA-----VEAQAIDRVHRMGQLRDVKVSRF 977

Query: 171  IAQNTIDELVLQRLRTKSTIQDLL 194
            + +N+I+  +L+    K  I   L
Sbjct: 978  VVKNSIEGRILKIQERKMMIAGSL 1001


>gi|261199416|ref|XP_002626109.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594317|gb|EEQ76898.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1090

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 92   RTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +L +    + E+ +   I +L A   + G GLNL   G+ +      ++     Q ++R
Sbjct: 969  MSLKQRNAALDEFRDNNDITVLLATLGAGGVGLNLTS-GSRVYIMEPQYNPAAIAQAVDR 1027

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +      + G  R V     I +++I+E + +  + K  + D+ LN  + +   +
Sbjct: 1028 V-----HRLGQTREVTTIQFIMKDSIEEKIAELAKKKQQMADMSLNRSRLDRREL 1077


>gi|167860150|ref|NP_001018610.2| SWI/SNF-related, matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1 [Danio
           rerio]
          Length = 972

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
           K     +++   F   L  ++                  + +    I ++N   +I +  
Sbjct: 814 KEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFL 873

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    N ++   +  +        ++    R  + G  R V V  LI++
Sbjct: 874 LSTRAGGQGINL-ASANTVILHDIDCNP-----FNDKQAEDRCHRMGQTRTVQVIKLISK 927

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           ++I++ +L+  + K  ++  +
Sbjct: 928 DSIEDCMLRVGQEKLKLEQDM 948


>gi|169146048|emb|CAQ14040.1| novel protein similar to vertebrate SWI/SNF-related,
           matrix-associated actin-dependent regulator of
           chromatin, subfamily a, containing DEAD/H box 1
           (SMARCAD1, zgc:113183) [Danio rerio]
          Length = 972

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKIPLLF 113
           K     +++   F   L  ++                  + +    I ++N   +I +  
Sbjct: 814 KEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEIFVFL 873

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NL    N ++   +  +        ++    R  + G  R V V  LI++
Sbjct: 874 LSTRAGGQGINL-ASANTVILHDIDCNP-----FNDKQAEDRCHRMGQTRTVQVIKLISK 927

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
           ++I++ +L+  + K  ++  +
Sbjct: 928 DSIEDCMLRVGQEKLKLEQDM 948


>gi|10436220|dbj|BAB14759.1| unnamed protein product [Homo sapiens]
          Length = 361

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD- 95
            +   +      +   K + L  I+ +       +++   F   L  L+      +    
Sbjct: 174 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 233

Query: 96  ---------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                    +    I E+N +  I +      + G G++L    N+++   +  +     
Sbjct: 234 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGIDLTS-ANVVILHDIDCNP---- 288

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              ++    R  + G  + V V  LI+Q TI+E +L+  + K  ++  +
Sbjct: 289 -YNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDM 336


>gi|189239152|ref|XP_971094.2| PREDICTED: similar to Transcriptional regulator ATRX homolog
            (ATP-dependent helicase XNP) (X-linked nuclear protein)
            (dXNP) (d-xnp) [Tribolium castaneum]
          Length = 1220

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 76   HFNSDLARLQKAFPQGRTLDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
             F +    +      G T  +      +++N      +        G GLNL  G N ++
Sbjct: 991  QFRNWRPNVDYYRMDGDTSVENRDILCKKFNSNPTSKVFLLTHKVGGLGLNLT-GANRVI 1049

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                  +        +   + R  + G +R  +VY L++  T++E +  R   K +I   
Sbjct: 1050 LIGSNHNPSH-----DSQSLYRVYRFGQERKCYVYRLVSLGTMEEKIYHRCVLKLSISGT 1104

Query: 194  LLNAL 198
            +++ L
Sbjct: 1105 VVDKL 1109


>gi|68065662|ref|XP_674815.1| PfSNF2L [Plasmodium berghei strain ANKA]
 gi|56493633|emb|CAH95809.1| PfSNF2L, putative [Plasmodium berghei]
          Length = 714

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    +I++ F   ++ +     ++   + R  + G K+ V VY  + 
Sbjct: 1   LLSTRAGGIGINLTT-ADIVILFDSDYNPQ-----MDIQAMDRAHRIGQKKRVIVYRFVT 54

Query: 173 QNTIDELVLQRLRTKSTIQDLLLN 196
           QN+++E +++R   K  +  L++ 
Sbjct: 55  QNSVEEKIVERAAKKLKLDSLIIQ 78


>gi|313768125|ref|YP_004061556.1| hypothetical protein BpV1_126 [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599732|gb|ADQ91753.1| hypothetical protein BpV1_126 [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 478

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 23  FNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
                  ++  Q       Y        DE   + E   +K++ L  +I +      +V 
Sbjct: 261 MEIFECLLRARQSMIYPQMYINGIAKKRDEIPEFWEGRSKKMETLFKLISEHPDEKTLVF 320

Query: 75  YHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 126
             F  ++  +++             + +     ++ +N   +  +      + G GLN+Q
Sbjct: 321 CQFKQEMDYIRENLTCPVFRIDGSVSKEDREKQLKLFNEAPQNSVFLIQVKAGGQGLNIQ 380

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-----IDELVL 181
              + + F +  W+            + R  ++G KR V+V  L+  +T     +++ ++
Sbjct: 381 -CASRIYFTAPCWNPATEL-----QAIGRAHRSGQKRKVYVKKLVYSDTPGYPSVEQAMI 434

Query: 182 QRLRTKSTIQDLLL--NALKKET 202
                KS +   +L  + LKK+ 
Sbjct: 435 ALQGHKSLLSAEVLRDDRLKKQI 457


>gi|123415533|ref|XP_001304706.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121886177|gb|EAX91776.1| SNF2 family N-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 572

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +   E    L  A   +  HG+NL    +I++FF L W+       I+     R  
Sbjct: 429 KKIEEFSKEDGPDLFIATTTAAAHGINLTS-ASIVIFFELNWNP-----KIDLQAEDRVH 482

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +    + V ++ ++  +TID+ +++    K  I + +++ 
Sbjct: 483 RLTQTKTVDIFKIVMIDTIDQRIIEAQERKDKIANGVIHD 522


>gi|71422266|ref|XP_812080.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|122021396|sp|Q4DCH3|JBP2_TRYCR RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
 gi|70876818|gb|EAN90229.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 1086

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 12/156 (7%)

Query: 51   VHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +H  + K  + II  +   +   ++    S          +     +     +   + KI
Sbjct: 888  LHSIREKKEKAIIFSQYVGSQDFISRTLTSFDIVSSTIRGRDCHERRRRTIEKFREDEKI 947

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
              L        +GL+     N ++ +  WW+ +     +E   + R  +    RAV VY 
Sbjct: 948  TCLLLSTQIGAYGLDFTA-ANHVILWDSWWNPQ-----VESQAIARAYRRNQTRAVIVYR 1001

Query: 170  LIA--QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            L +  ++TI   VL+    K  +   ++N      +
Sbjct: 1002 LASEFEDTI---VLKTQIRKLALFRCIMNEEASRAV 1034


>gi|327355140|gb|EGE83997.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1091

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 26/216 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y       +   Q   +   ++  +  K  Q      Y       K +    +  +E   
Sbjct: 875  YSAITCRGFEKFQASQLSTRHNLKQAKKFGQ------YEGPHTKTKALISHLLDTVEESK 928

Query: 64   --EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEGK-I 109
                      +V   + S L  ++                  +L +    + E+ +   I
Sbjct: 929  KAPDEPPIKSVVFSSWTSHLDLIEIALEDNGITTFTRLDGTMSLKQRNAALDEFRDNNDI 988

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+ +      ++     Q ++R+      + G  R V    
Sbjct: 989  TVLLATLGAGGVGLNLTS-GSRVYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1042

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I +++I+E + +  + K  + D+ LN  + +   +
Sbjct: 1043 FIMKDSIEEKIAELAKKKQQMADMSLNRSRLDRREL 1078


>gi|315446159|ref|YP_004079038.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
 gi|315264462|gb|ADU01204.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
          Length = 1124

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKAF 88
            +   +    +  +  K++ L  I+E+   N   ++V  HF             R+    
Sbjct: 680 FMAMRQAGMRQGRNSTKMQRLIEIVEEAEDNGRRVVVFSHFLDVLNDVARHMPGRVFGPL 739

Query: 89  PQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    + +++  +   +L A   + G GLN+Q   +++V              
Sbjct: 740 TGSVAANQRQVLVDDFSAAQKGAVLVAQIVAGGVGLNIQA-ASVVVICEPQLKPTT---- 794

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            E   + R  + G   +V V+ L++   +D+ V + L TK ++ + 
Sbjct: 795 -EWQAIARAHRMGQLESVQVHRLLSDEGVDQRVREILATKKSLFES 839


>gi|307564877|ref|ZP_07627402.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346413|gb|EFN91725.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
          Length = 477

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 15/154 (9%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PCTIQEW 104
             KI      I     +   +IV    +  +  L K FP+  T+            +  +
Sbjct: 309 KGKIAQAIDFISTFLESGKKLIVFCSLHEIVDELCKTFPKAVTVTGRDSAVNKQAAVDAF 368

Query: 105 NEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             G    L+     + G GL L    + + F  L W + +  Q  +R       + G   
Sbjct: 369 QTGENTRLIICSIKAAGVGLTLTA-ASDVAFCELPWTMADCCQCEDR-----AHRIGQND 422

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  YYL+ + TID  +   ++ K +I   ++N+
Sbjct: 423 NVNCYYLLGRGTIDNTIYSLIQRKKSIAKEIMNS 456


>gi|225558413|gb|EEH06697.1| DNA repair helicase rad5,16 [Ajellomyces capsulatus G186AR]
          Length = 1118

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +    I+E+  +  I +L     + G GL+L    N  +   LWW+     + IE+
Sbjct: 832 MPIRQREKCIEEFSKDPAIRILVCSLRTAGTGLDLTA-ANKCILVDLWWN-----EAIEQ 885

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  +   KR V    ++ +N+ID+ +      KS   D +L +
Sbjct: 886 QAFFRLFRINQKRKVEFVRVVVRNSIDDRLQLIQEDKSNNIDRVLGS 932


>gi|270010822|gb|EFA07270.1| hypothetical protein TcasGA2_TC013301 [Tribolium castaneum]
          Length = 1294

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 76   HFNSDLARLQKAFPQGRTLDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILV 133
             F +    +      G T  +      +++N      +        G GLNL  G N ++
Sbjct: 1065 QFRNWRPNVDYYRMDGDTSVENRDILCKKFNSNPTSKVFLLTHKVGGLGLNLT-GANRVI 1123

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                  +        +   + R  + G +R  +VY L++  T++E +  R   K +I   
Sbjct: 1124 LIGSNHNPSH-----DSQSLYRVYRFGQERKCYVYRLVSLGTMEEKIYHRCVLKLSISGT 1178

Query: 194  LLNAL 198
            +++ L
Sbjct: 1179 VVDKL 1183


>gi|145497571|ref|XP_001434774.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401902|emb|CAK67377.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++   +I+++ E +I ++     +  +G+NL    N ++    WW+       +E  
Sbjct: 832 MDKNQRKASIKDFFEKQITVMLISLKAGAYGINL-SCANHVLLVDPWWNPA-----VEDQ 885

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            V R  + G ++ V +   I  NTI+E VLQ  + K  +    L 
Sbjct: 886 AVERVHRLGQQKQVQIVSFICDNTIEERVLQMHKMKRQLFKDALQ 930


>gi|861466|gb|AAB33905.1| DNA helicase homolog [Invertebrate iridescent virus 6]
          Length = 606

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             D    +     G T ++     Q  N+     LF        GLNL    + +     
Sbjct: 469 KEDYPNFKFVQVDGDTKNRSELFDQFKNDINTQGLFLTYKVGSEGLNLTEATHCICIEPW 528

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W +       +      R  + G  + V+V+ +I + +I+E +++  + K  +    L  
Sbjct: 529 WTNA------VHNQAKARLWRTGQTKQVYVHNVIIEGSIEEKIVEICKGKDDMAASYLEG 582

Query: 198 LKK 200
            ++
Sbjct: 583 KER 585


>gi|42569958|ref|NP_182126.2| transcription regulatory protein SNF2, putative [Arabidopsis
            thaliana]
 gi|330255539|gb|AEC10633.1| ATP-dependent helicase BRM [Arabidopsis thaliana]
          Length = 2192

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 60/229 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1278 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1337

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N+      +      + G GLNLQ   +
Sbjct: 1338 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-AD 1396

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQ--------------- 173
             +V +    + +      E   V R  + G  R V V Y+  + +               
Sbjct: 1397 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGG 1451

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                            +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1452 SVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1500


>gi|291164804|gb|ADD80834.1| helicase [Rhodococcus phage ReqiDocB7]
          Length = 500

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K Y +   EL  D    + +A  N  +K ++  Q+        E+   K    + +   +
Sbjct: 264 KLYDQVATELLLDTGSGDPDAIENPMTKFLRLKQICGTTASVREDGLDKSAKLD-LATED 322

Query: 61  VIIEKANAAPIIVAYHFNSDLARL---------------------QKAFPQGRTLDKDPC 99
            +    N   I+V   F S L                          A       D+   
Sbjct: 323 AVEICENGHKIVVFTQFRSVLHCYIDRLNVALANVPVNGKATQVPVFALHGDVPNDQRQG 382

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++EW     P +                     F    +    +QQ ++R+    Q   
Sbjct: 383 IVKEWAAVDGPAVIVCMTQVAGIGLNMTAARHGQFLDKLFVPLLNQQAVDRMNRIGQ--- 439

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++V ++   A++T++  V   L+ K  + + ++ 
Sbjct: 440 STTQSVQIFDYQARDTVESRVESILKVKKNLFENIVE 476


>gi|196002339|ref|XP_002111037.1| hypothetical protein TRIADDRAFT_54568 [Trichoplax adhaerens]
 gi|190586988|gb|EDV27041.1| hypothetical protein TRIADDRAFT_54568 [Trichoplax adhaerens]
          Length = 1562

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 43/218 (19%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------HDE 54
           + Y    +       G         +  ++  +  N A     E+   +           
Sbjct: 664 RNYKALSK-------GAKGSLGGFINIMMELKKCCNHASLVKMEEKNNKDAIQSLLRGSG 716

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQ 102
           K+  L+ ++   K     +++       L  L +       L +              + 
Sbjct: 717 KMILLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQIKHFLFQRLDGSIRGDLRKQALD 776

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +N              + G GLNL    + ++ F   W+ +      +    +R  + G
Sbjct: 777 HFNADGSQDFCFLLSTRAGGLGLNL-ASADTVIIFDSDWNPQN-----DIQAQSRAHRIG 830

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            ++         QN+++E +++R   K  +  L++  +
Sbjct: 831 QRK---------QNSVEEEIIERATKKMVLDHLVIQRM 859


>gi|301630532|ref|XP_002944371.1| PREDICTED: transcription termination factor 2-like [Xenopus
           (Silurana) tropicalis]
          Length = 143

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +              +    ++++N       ++       G       GGN L    + 
Sbjct: 12  IGLSYATIDGSVNPKQRMDMVEDFNNNPKGPQVMLVSL-CAGGVGLNLVGGNHLFLLDMH 70

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+     Q  +RI      + G ++ V ++  +   T++E + Q    K  +   +L+ 
Sbjct: 71  WNPALEDQACDRI-----YRVGQQKDVVIHRFVCLGTVEEKISQLQEKKKDLAKKVLSG 124


>gi|308494324|ref|XP_003109351.1| hypothetical protein CRE_08005 [Caenorhabditis remanei]
 gi|308246764|gb|EFO90716.1| hypothetical protein CRE_08005 [Caenorhabditis remanei]
          Length = 880

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            P  I+++  +  I +      + G GLNL    N ++ F   W+ +      +     R
Sbjct: 492 RPKIIKKFEEDADIKVFLMTTRAGGLGLNLT-CANKVIIFDPDWNPQA-----DNQAKNR 545

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G +  V +  LI+  T+++    +   K  +   LL+    +  HV
Sbjct: 546 IYRMGQENDVSIVRLISNGTLEDRKFFKQVQKEMLAAQLLH--NADVEHV 593


>gi|42571243|ref|NP_973695.1| transcription regulatory protein SNF2, putative [Arabidopsis
            thaliana]
 gi|75122353|sp|Q6EVK6|BRM_ARATH RecName: Full=ATP-dependent helicase BRM; Short=AtBRM; AltName:
            Full=Protein BRAHMA
 gi|49658966|emb|CAG28313.1| putative SNF2 subfamily ATPase [Arabidopsis thaliana]
 gi|330255538|gb|AEC10632.1| ATP-dependent helicase BRM [Arabidopsis thaliana]
          Length = 2193

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 60/229 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1279 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1338

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N+      +      + G GLNLQ   +
Sbjct: 1339 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-AD 1397

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQ--------------- 173
             +V +    + +      E   V R  + G  R V V Y+  + +               
Sbjct: 1398 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGG 1452

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                            +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1453 SVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1501


>gi|302831510|ref|XP_002947320.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
           nagariensis]
 gi|300267184|gb|EFJ51368.1| hypothetical protein VOLCADRAFT_103414 [Volvox carteri f.
           nagariensis]
          Length = 986

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 6   KFQREL--YCDLQGENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K +REL     +    + A   +  +      Q     +        +       +    
Sbjct: 641 KMKRELEGIRAVANSMMSAGGASGLAGVSHEQQQT---IMRLWRDTAEIKKTAVAEYCSD 697

Query: 62  IIEKANAAPIIVAYHFN------SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFA 114
           ++ +A+ A  ++  H          L         G + D     ++++  +  + +   
Sbjct: 698 LL-EADGAKFLLFAHHKVLLDAVKSLKARYIRIDGGTSGDDRGRLVKQFQEDADVKVAIL 756

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G GL +    +++VF  L W   + Q         R  + G   +V +++L+ + 
Sbjct: 757 SIKAAGVGLTMTA-SSLVVFAELSWVPGDIQ-----QAEDRCHRIGQHTSVNIHFLLVRG 810

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           +IDEL+   L+ K +    +L+ 
Sbjct: 811 SIDELMWDTLQNKLSDVGKVLDG 833


>gi|169826381|ref|YP_001696539.1| ATP-dependent helicase yqhH [Lysinibacillus sphaericus C3-41]
 gi|168990869|gb|ACA38409.1| Hypothetical ATP-dependent helicase yqhH [Lysinibacillus sphaericus
           C3-41]
          Length = 504

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    +          F       K       + E +  +L A   + G 
Sbjct: 365 IIFTEYRATQIYLQWYLHSKGISSVLFNGKFNKSKRDYMKHLFKE-RAQVLIAT-EAGGE 422

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + ++ + L W+  + +Q I R+      + G +  V +Y L  ++TI+E +L
Sbjct: 423 GINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEHDVHIYNLAIEDTIEEKIL 476

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + L TK  + + ++  L  
Sbjct: 477 ELLHTKIDVFEKVVGDLDA 495


>gi|297824661|ref|XP_002880213.1| ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata]
 gi|297326052|gb|EFH56472.1| ATBRM/CHR2 [Arabidopsis lyrata subsp. lyrata]
          Length = 2186

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 60/229 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1272 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1331

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N+      +      + G GLNLQ   +
Sbjct: 1332 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-AD 1390

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQ--------------- 173
             +V +    + +      E   V R  + G  R V V Y+  + +               
Sbjct: 1391 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKISSHQKEDELRSGG 1445

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                            +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1446 SIDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1494


>gi|85085493|ref|XP_957522.1| hypothetical protein NCU04445 [Neurospora crassa OR74A]
 gi|28918614|gb|EAA28286.1| predicted protein [Neurospora crassa OR74A]
          Length = 1139

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEK----ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDK 96
               K   L+ II +    A    IIV  H+             +       F       +
Sbjct: 912  PSAKTTRLKDIILEWQKDAPDDKIIVFTHWILLGRILGRVLQQEKIDFLYLFGGMGPTVR 971

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +          +I +L +     G  LNL    N +V    WW+       +E+    R 
Sbjct: 972  EDQIKAFQTNPRIKVLVSSLRVGGQSLNL-AAANRVVILDAWWNNG-----MEKQAFGRV 1025

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+  +   ++A+NTID+ ++     K       + 
Sbjct: 1026 FRFGQKKESWFTRILAKNTIDKRIIDLQEDKLKAISKAIQ 1065


>gi|71028160|ref|XP_763723.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350677|gb|EAN31440.1| hypothetical protein, conserved [Theileria parva]
          Length = 845

 Score = 69.4 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK----------- 86
           V              K++ +  I+         +++   F + L  +Q            
Sbjct: 682 VLISRVPEELYFESTKVQKMLEILSNIMERNEKVLIFSQFTNYLDIIQHVLRLREITPVL 741

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +L      I  +N   + +L         GLNL    N ++     W+      
Sbjct: 742 RLDGTVSLTDRDTIINTFNTDAVSILLISVKVGNVGLNL-SVANNVILMDQSWNP----- 795

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +     R  + G ++ V +Y L  ++TI+E ++ +   K  +
Sbjct: 796 YNDIQAEDRCHRIGQQKIVNIYKLFVKDTIEEYIIVKSHNKLHL 839


>gi|52080994|ref|YP_079785.1| DEAD/DEAH box helicase YqhH [Bacillus licheniformis ATCC 14580]
 gi|319645048|ref|ZP_07999281.1| YqhH protein [Bacillus sp. BT1B_CT2]
 gi|52004205|gb|AAU24147.1| DEAD/DEAH box helicase YqhH [Bacillus licheniformis ATCC 14580]
 gi|317392857|gb|EFV73651.1| YqhH protein [Bacillus sp. BT1B_CT2]
          Length = 559

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    F          F  G    K       +  GK+ +L A   + G 
Sbjct: 376 IIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-EAGGE 433

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  N ++ + L W+    +Q I RI      + G +R V++Y +  ++T++E +L
Sbjct: 434 GINLQF-CNKIINYDLPWNPMRLEQRIGRI-----HRLGQERDVYIYNMATKHTVEEHIL 487

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K  + + ++  L
Sbjct: 488 KLLYEKIHLFEKVVGDL 504


>gi|126651081|ref|ZP_01723292.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
 gi|126592282|gb|EAZ86331.1| helicase (Snf2/Rad54 family) protein [Bacillus sp. B14905]
          Length = 504

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    +          F       K       + E +  +L A   + G 
Sbjct: 365 IIFTEYRATQIYLQWYLHSKGITSVLFNGKFNKSKRDYMKHLFKE-RAQVLIAT-EAGGE 422

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + ++ + L W+  + +Q I R+      + G +  V +Y L  +NTI+E +L
Sbjct: 423 GINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEHDVHIYNLAIENTIEEKIL 476

Query: 182 QRLRTKSTIQDLLLNALKK 200
           + L TK  + + ++  L  
Sbjct: 477 ELLHTKIDVFEKVVGDLDA 495


>gi|73998078|ref|XP_859390.1| PREDICTED: similar to helicase, lymphoid-specific isoform 7 [Canis
           familiaris]
          Length = 812

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 52/190 (27%), Gaps = 52/190 (27%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 563 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQ 622

Query: 77  FNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
               L  L                  +  +    +  +N      +F +P S        
Sbjct: 623 MTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLNPQS-------- 674

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                                 +     R  + G  + V VY L+  NTID+ +++R   
Sbjct: 675 ----------------------DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAA 712

Query: 187 KSTIQDLLLN 196
           K  ++ L+++
Sbjct: 713 KRKLEKLIIH 722


>gi|71662347|ref|XP_818182.1| SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70883417|gb|EAN96331.1| SNF2 DNA repair protein, putative [Trypanosoma cruzi]
          Length = 986

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 12/156 (7%)

Query: 51  VHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           +H  + K  + II  +   +   ++    S          +     +     +   +  I
Sbjct: 788 LHSIREKKEKAIIFSQYVGSQDFISRTLTSFDIVSSTIRGRDCHERRRRTIEKFREDENI 847

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             L        +GL+     N ++ +  WW+ +     +E   + R  +    RAV VY 
Sbjct: 848 TCLLLSTQIGAYGLDFTA-ANHVILWDSWWNPQ-----VESQAIARAYRRNQTRAVIVYR 901

Query: 170 LIA--QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           L +  ++TI   VL+    K  +   ++N      +
Sbjct: 902 LASEFEDTI---VLKTQIRKLALFRCIMNEEASRAV 934


>gi|17538806|ref|NP_501545.1| RADiation sensitivity abnormal/yeast RAD-related family member
           (rad-26) [Caenorhabditis elegans]
 gi|3874525|emb|CAA90984.1| C. elegans protein C27B7.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1274

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +  R         +       I  +N E  + L      +   G+NL    N  +     
Sbjct: 829 EKNRNYLRLDGTTSGADREKLINRFNSEPGLSLFLISTRAGSLGINLVS-ANRCIIIDAC 887

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W+        +   V R  + G ++  FVY LI  N+++  +  R  +K  +Q  +++ 
Sbjct: 888 WNP-----CHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVDD 941


>gi|52786371|ref|YP_092200.1| YqhH [Bacillus licheniformis ATCC 14580]
 gi|52348873|gb|AAU41507.1| YqhH [Bacillus licheniformis ATCC 14580]
          Length = 561

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    F          F  G    K       +  GK+ +L A   + G 
Sbjct: 378 IIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFR-GKVQVLIAT-EAGGE 435

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  N ++ + L W+    +Q I RI      + G +R V++Y +  ++T++E +L
Sbjct: 436 GINLQF-CNKIINYDLPWNPMRLEQRIGRI-----HRLGQERDVYIYNMATKHTVEEHIL 489

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K  + + ++  L
Sbjct: 490 KLLYEKIHLFEKVVGDL 506


>gi|322826005|gb|EFZ30802.1| helicase-like protein, putative [Trypanosoma cruzi]
          Length = 1090

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQ----GRTLDKDPCTIQEWNE-GKIPLLFAH 115
            ++         +   +  D +  +           +  +   T++ +N      +L   
Sbjct: 687 KMLSLFEGIIAEMNRRWQQDGSLPRPIRFCRLDGNSSGAERENTLRSFNSLRGADVLLLS 746

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+N+      ++     ++  +     +R  + R  + G  R VFVY L+   T
Sbjct: 747 MKAGGVGINITS-ATRVILADSGFNPAD-----DRQAIGRAYRYGQTRPVFVYRLVCYQT 800

Query: 176 IDELVLQRLRTKSTIQDLLLN--ALKKETI 203
           ++  + Q+   K  +   ++   +LK++ +
Sbjct: 801 LEHRMFQQKVAKEWLFHTIVEEASLKRDAL 830


>gi|290989143|ref|XP_002677202.1| predicted protein [Naegleria gruberi]
 gi|284090808|gb|EFC44458.1| predicted protein [Naegleria gruberi]
          Length = 1068

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 44  EEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT-------- 93
           E          K + ++ ++EK   +   +++   +   L  +                 
Sbjct: 753 EPIENILAKSTKAQMIKQLVEKSIDDGHKVLIFSQYTRMLDIIGVILKSMNIKYNRIDGS 812

Query: 94  ---LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +    +  +N +  I        + G GLNL    + ++     ++       I+
Sbjct: 813 VTKYQERLSLVDSFNQKKNIKCFLLSSQAGGVGLNLTA-ASRVIIVEPNFNPS-----ID 866

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
              + R  + G ++ V VY LI  +TI+E + +RL
Sbjct: 867 EQAIDRAYRIGQRQNVIVYRLICSSTIEEYIYKRL 901


>gi|312086053|ref|XP_003144925.1| hypothetical protein LOAG_09349 [Loa loa]
 gi|307759908|gb|EFO19142.1| hypothetical protein LOAG_09349 [Loa loa]
          Length = 223

 Score = 69.0 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              A+ G GLNL  G + ++ F   W+     Q++ RI      + G K    +Y LI  
Sbjct: 1   MSSATGGLGLNL-VGASRMILFDSDWNPAVDMQVMARIW-----RQGQKSPCHIYRLITG 54

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
            T+DE +LQR   KS++ + ++  +  E
Sbjct: 55  GTVDEKILQRQIKKSSL-NTVVEMIPAE 81


>gi|116194784|ref|XP_001223204.1| hypothetical protein CHGG_03990 [Chaetomium globosum CBS 148.51]
 gi|88179903|gb|EAQ87371.1| hypothetical protein CHGG_03990 [Chaetomium globosum CBS 148.51]
          Length = 1140

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 10/160 (6%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
              + +  +K    + II   N A    I+      +       F       K+   +   
Sbjct: 957  KNQILKWQKEAPDDKIIVFVNWAKLACIIGRMLQEEKIPFLYYFGDLTKDQKEAAILNFQ 1016

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +  I +L A     G  LNL    N ++    WW+     + +E     R  + G ++ 
Sbjct: 1017 EKPNIKVLIASARCGGQALNL-NFANRVISVDQWWN-----RAMEDQAFGRVHRIGQQKE 1070

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA--LKKET 202
             +   +I +++IDE++L     K      +      ++E 
Sbjct: 1071 TYFTKIIVRDSIDEMLLNTQDAKEKRISDVFKEGVDRREM 1110


>gi|171679747|ref|XP_001904820.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939499|emb|CAP64727.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1563

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 35/161 (21%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKA 87
             + LQ   G                K++AL+ ++ + +      ++       L  L++ 
Sbjct: 1425 KRLLQYDCG----------------KLQALDKLLRRLHAGGHRALIFTQMTKVLDILEQF 1468

Query: 88   FPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                              +       +N + +I        S G G+NL  G + ++F+ 
Sbjct: 1469 LNIHGHKYLRLDGATKVEQRQILTDRFNHDTRITCFILSTRSGGLGINLT-GADTVIFYD 1527

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
              W+       +++    R  + G  R V +Y L++++T +
Sbjct: 1528 QDWNPA-----MDKQCQDRAHRIGQTRDVHIYRLVSEHTCE 1563


>gi|153006150|ref|YP_001380475.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029723|gb|ABS27491.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1002

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 64/184 (34%), Gaps = 21/184 (11%)

Query: 28  KTVKCLQ---LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
           + ++  Q   +A  A    ++K       ++++ L   I   +   ++V   +    A  
Sbjct: 581 RLMRAFQRMRMACDAAGLVDKKTRGAPKLDELERLLEEICLGDRRKVVVFSEWERMQAMA 640

Query: 85  QKAF----------PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILV 133
            +              G         I  + +  +  +      + G GLNLQ   + +V
Sbjct: 641 AELCERLGVGHVRLHGGVPSAARGALIDRFRDDPECRVFL-STDAGGVGLNLQA-ASHVV 698

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              L W+     Q I R+      + G + AV V  L+++ + +E +   L  K  +   
Sbjct: 699 NLDLPWNPAVLAQRIARV-----HRLGQREAVNVVLLVSEGSFEERLEATLDGKRALFAA 753

Query: 194 LLNA 197
            +  
Sbjct: 754 AVGD 757


>gi|262405856|ref|ZP_06082406.1| helicase [Bacteroides sp. 2_1_22]
 gi|262356731|gb|EEZ05821.1| helicase [Bacteroides sp. 2_1_22]
          Length = 801

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----- 80
             +   Q+     + Y  ++K   +   E+   +   + ++    +++   +        
Sbjct: 461 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEKVVIFSQWERMTRLIA 520

Query: 81  -----LARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
                L    +    G   +        + E  +  +      +   GLNLQ   +IL+ 
Sbjct: 521 KELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFL-STDAGSTGLNLQ-VASILIN 578

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 579 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 633

Query: 195 LN 196
           L+
Sbjct: 634 LD 635


>gi|25028310|ref|NP_738364.1| hypothetical protein CE1754 [Corynebacterium efficiens YS-314]
 gi|259507368|ref|ZP_05750268.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           efficiens YS-314]
 gi|23493595|dbj|BAC18564.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165079|gb|EEW49633.1| SNF2 family superfamily II DNA/RNA helicase [Corynebacterium
           efficiens YS-314]
          Length = 886

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQ 102
             K+K +  ++++   +    ++   F   L         R+           +    + 
Sbjct: 704 SAKMKRIIELLDEAEEHGRKTLIFTFFLDILDELEHVLGARVIGRIDGSVPAARRQELVD 763

Query: 103 EWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              +      L +   + G GLN+Q   + ++           Q       V R  + G 
Sbjct: 764 ALADAPAGSALISQITAGGVGLNIQS-ASQVIICEPQVKPTIEQ-----QAVARVHRMGQ 817

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              V V+ LI  +T DE +L+ L  K+ I D
Sbjct: 818 TATVNVHRLIGDDTADERMLEILAGKTQIFD 848


>gi|307566197|ref|ZP_07628648.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345090|gb|EFN90476.1| SNF2 family N-terminal domain protein [Prevotella amnii CRIS 21A-A]
          Length = 1090

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 37/225 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKI 56
           + Y      +    Q                 Q+ +       +    ++        K+
Sbjct: 702 RLYRDELNAVVATRQSRKTPQGMMFKVITAFRQICDSPYLSVVDYSQIDIDKLINSSSKL 761

Query: 57  KALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP--------------------QGRTL 94
                I++K   N   +I+          L+                        Q + L
Sbjct: 762 SVTINILDKIRKNNEKVIIFTDHKDTQRLLRNVVFRRYDLDISIINGETPATAKVQSQKL 821

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +        N     ++   P + G GLN+  G N ++ +S +W+  + Q         
Sbjct: 822 SRQQTVDNFQNAEGFNIIIMSPLAAGMGLNIT-GANNVIHYSRFWNPAKEQ-----QATD 875

Query: 155 RQRQAGFKRAVFVYYL--IAQN--TIDELVLQRLRTKSTIQDLLL 195
           R  + G K+ V VYY   ++++  T D ++   L  K+ + D  L
Sbjct: 876 RAYRIGQKKDVNVYYPMSVSKDFRTFDVIIDALLAKKAELADATL 920


>gi|299537022|ref|ZP_07050327.1| ATP-dependent helicase yqhH [Lysinibacillus fusiformis ZC1]
 gi|298727602|gb|EFI68172.1| ATP-dependent helicase yqhH [Lysinibacillus fusiformis ZC1]
          Length = 502

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K    +VII     A  I    +          F       K       + E +  +L A
Sbjct: 356 KQANDKVIIFTEYRATQIYLQWYLHSNGISSVLFNGKFNKSKRDYMKHLFKE-RAQVLIA 414

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G+NLQ+  + ++ + L W+  + +Q I R+      + G +  V +Y L  ++
Sbjct: 415 T-EAGGEGINLQF-CHHVINYDLPWNPMKLEQRIGRV-----HRLGQEHDVHIYNLAIEH 467

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           TI+E +L+ L TK  + + ++  L  
Sbjct: 468 TIEEKILELLHTKIDVFEKVVGDLDA 493


>gi|294806211|ref|ZP_06765058.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294446467|gb|EFG15087.1| SNF2 family N-terminal domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 827

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----- 80
             +   Q+     + Y  ++K   +   E+   +   + ++    +++   +        
Sbjct: 487 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEKVVIFSQWERMTRLIA 546

Query: 81  -----LARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
                L    +    G   +        + E  +  +      +   GLNLQ   +IL+ 
Sbjct: 547 KELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFL-STDAGSTGLNLQ-VASILIN 604

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 605 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 659

Query: 195 LN 196
           L+
Sbjct: 660 LD 661


>gi|325094197|gb|EGC47507.1| DNA repair helicase rad5,16 [Ajellomyces capsulatus H88]
          Length = 1113

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +   +I+E+  +  I +L     + G GL+L    N  +   LWW+     + IE+
Sbjct: 833 MPIRQREKSIEEFSKDPAIRILVCSLRTAGTGLDLTA-ANKCILVDLWWN-----EAIEQ 886

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  +   KR V    ++ +N+ID+ +      KS   D +L +
Sbjct: 887 QAFFRLFRINQKRKVEFVRVVVRNSIDDRLQLIQEDKSNNIDRVLGS 933


>gi|119181856|ref|XP_001242107.1| hypothetical protein CIMG_06003 [Coccidioides immitis RS]
          Length = 2054

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYH------FNSDL----ARLQKAFPQGRTLDKDPC 99
            H  +   L+ II++       +++  H      +  D+                +     
Sbjct: 1370 HSHRAAMLDQIIKQSVNAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITSRQS 1429

Query: 100  TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N  +  + +      + G GLN+  G N +V F   ++        E   V R  
Sbjct: 1430 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPT-----WEEQAVGRAY 1483

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G ++ VFVY  IA  T ++++  +   K+ +   +++  KK  I 
Sbjct: 1484 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD--KKNPIR 1528


>gi|40882176|emb|CAF06002.1| related to protein RIS1 [Neurospora crassa]
          Length = 1226

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 52   HDEKIKALEVIIEK----ANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDK 96
               K   L+ II +    A    IIV  H+             +       F       +
Sbjct: 999  PSAKTTRLKDIILEWQKDAPDDKIIVFTHWILLGRILGRVLQQEKIDFLYLFGGMGPTVR 1058

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +          +I +L +     G  LNL    N +V    WW+       +E+    R 
Sbjct: 1059 EDQIKAFQTNPRIKVLVSSLRVGGQSLNL-AAANRVVILDAWWNNG-----MEKQAFGRV 1112

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + G K+  +   ++A+NTID+ ++     K       + 
Sbjct: 1113 FRFGQKKESWFTRILAKNTIDKRIIDLQEDKLKAISKAIQ 1152


>gi|281210112|gb|EFA84280.1| hypothetical protein PPL_03357 [Polysphondylium pallidum PN500]
          Length = 1494

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 20/180 (11%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
            G  +  E     E    K+   +  I          +V  H    L  L+++     T  
Sbjct: 861  GNSHLPELHVLLESGRAKLPGAQDYIVGLVKENKKFLVFAHHTDILDGLERSIKSTGTGY 920

Query: 96   -----------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                       +     +  N  K  +      + G GL L    +++VF  L+W     
Sbjct: 921  MRIDGSTPAEARQTYVTRFQNSDKCRVALLSITAAGTGLTLTA-SSLVVFVELYWTPGVL 979

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                 R    R  + G +  V ++YLI +NT+D+ +   +  K  +    L+  ++E +H
Sbjct: 980  -----RQAEDRVHRIGQREDVHIHYLIGKNTLDDKMWPTICNKLEVLGETLDG-QEEILH 1033


>gi|328863835|gb|EGG12934.1| hypothetical protein MELLADRAFT_87196 [Melampsora larici-populina
           98AG31]
          Length = 347

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 75/259 (28%), Gaps = 63/259 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE------------ 50
            Y  F R+   + + +  +      +        N  + + + +   +            
Sbjct: 76  LYQNFLRQFGVE-RKQKFQGGEFFKQLTNLRMTCNHPLLFRQNEQGVDAENQPINLIEQK 134

Query: 51  ---------VHDEK-----------------IKALEVIIEKANAAPIIVAYHFNSDLARL 84
                    +H+ K                 +  +    +       ++   + S +  +
Sbjct: 135 LGIKLPDERIHNSKVRDAIPTDWKLSPKIAYLVHMLQKKKSHGGGKSVIYTQWKSFIDWI 194

Query: 85  QKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
             AF       +                    +  +        + G GLN+    + + 
Sbjct: 195 IMAFDNSGITYRQLHGDQSTFERTSQLNSFTKDPNVEAFVVSIEAGGVGLNMT-CADEVY 253

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                W+ +  QQ ++R+      + G  ++V V++++   +I++ +    + K+ +   
Sbjct: 254 LMDAHWNPQVVQQAVDRL-----HRIGQAKSVRVFHVVTGQSIEQHLYNVQKRKAALAKR 308

Query: 194 LL-------NALKKETIHV 205
           ++          K E + V
Sbjct: 309 VITLTVPTEELEKAEALRV 327


>gi|323508354|emb|CBQ68225.1| related to RAD5-DNA helicase [Sporisorium reilianum]
          Length = 1377

 Score = 69.0 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 27/186 (14%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQ 90
            +Y              +  L  +         ++   F S L          R +     
Sbjct: 1190 IYVRNNVRSSTKVTALLDHLNALRAAEGPFKGVIFSQFTSFLDLIEPVLTRYRFRFLRLD 1249

Query: 91   GRTLDK-DPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            G T  K     + E+       +  L      + G GLNL    N +     WW+     
Sbjct: 1250 GSTPQKVREKLLVEFQSASSATETLLFLISLKAGGVGLNLTA-ANKIWLLDFWWN----- 1303

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL-------NAL 198
              IE   + R  + G  R V V+  + +++I+  +L   + K  +    L       +  
Sbjct: 1304 SSIENQAIDRIHRLGQTRPVSVFRYLVKDSIENRILLIQKRKDMLIRHALKQNGDEADRG 1363

Query: 199  KKETIH 204
            K ET+ 
Sbjct: 1364 KSETLQ 1369


>gi|237717088|ref|ZP_04547569.1| helicase [Bacteroides sp. D1]
 gi|294647817|ref|ZP_06725369.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
 gi|229443071|gb|EEO48862.1| helicase [Bacteroides sp. D1]
 gi|292636725|gb|EFF55191.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CC 2a]
          Length = 829

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 28  KTVKCLQLA--NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----- 80
             +   Q+     + Y  ++K   +   E+   +   + ++    +++   +        
Sbjct: 489 LLLMLSQMRMLCDSTYILDQKTRYDTKVEETLNILRNVFESGDEKVVIFSQWERMTRLIA 548

Query: 81  -----LARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVF 134
                L    +    G   +        + E  +  +      +   GLNLQ   +IL+ 
Sbjct: 549 KELDVLGVRYEYLHGGIPSEARKNLTDNFTELPESRVFL-STDAGSTGLNLQ-VASILIN 606

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             L W+    +Q I RI      + G K+ + V  L+A  TI+E +L  L  K+++ + +
Sbjct: 607 LDLPWNPAVLEQRIARI-----YRIGQKKNIQVINLVASQTIEERMLSTLNFKTSLFEGI 661

Query: 195 LN 196
           L+
Sbjct: 662 LD 663


>gi|281422316|ref|ZP_06253315.1| helicase, Snf2 family [Prevotella copri DSM 18205]
 gi|281403637|gb|EFB34317.1| helicase, Snf2 family [Prevotella copri DSM 18205]
          Length = 805

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 19/182 (10%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---- 84
             +   + + +   D++  +    DE +  +  II +     ++V   +      +    
Sbjct: 501 LSQMRMVCDSSYILDQKTRYDTKVDECVNIISDIISE-EGEKVVVFSQWERMTRLIAKEL 559

Query: 85  ------QKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                  +    G   +K    +  + NE    +      +   GLNLQ    I+    L
Sbjct: 560 EKKEIGFEYLHGGVPSEKRKNLVDNFMNEPSSRVFL-STDAGSTGLNLQSAATIINI-DL 617

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+    +Q I RI      + G +  + V  L+  ++I++ +L +LR K+++ + +L+ 
Sbjct: 618 PWNPAVLEQRIGRI-----YRLGQQNNIQVINLVTPDSIEQEMLGKLRFKTSMFEGVLDD 672

Query: 198 LK 199
            +
Sbjct: 673 GE 674


>gi|224139702|ref|XP_002323235.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867865|gb|EEF04996.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 398

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I++++  G   +L A   + G G+NL    + +     WW+       +E   + 
Sbjct: 283 RQAEIIKKFSSAGADTVLLASLKTSGTGINLTA-ASKVYLLEPWWNSA-----VEEQAIN 336

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           R  Q G +  V +  LIAQN+I+E +L+    K 
Sbjct: 337 RVHQYGQQENVRIVRLIAQNSIEERILEMQERKK 370


>gi|15230098|ref|NP_189077.1| chr40 (chromatin remodeling 40); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|11994696|dbj|BAB02934.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1132

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 88   FPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                         I  +N+      +L A   +C  G++L  G + +V   + W+     
Sbjct: 978  MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISL-VGASRVVILDVVWNPS--- 1033

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              +E   ++R  + G KRAVF+Y+L+ ++T +     +   K  I +L+ ++  ++
Sbjct: 1034 --VESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEK 1087


>gi|46137913|ref|XP_390647.1| hypothetical protein FG10471.1 [Gibberella zeae PH-1]
          Length = 1033

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 42   YDEEKHWKEVHDEKIKA-LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------- 91
              E     E H  KI+A +E + +       I+   +   L  + +   +          
Sbjct: 865  DHEHYFNAEGHSTKIRALVEDVRKDLWTTKSIIFSCWTRTLHLIARHLEKAGIPYLQLDG 924

Query: 92   -RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               L +   T+ ++  G + P+L     +   GLNL    N +    L W+       +E
Sbjct: 925  NSPLPQRQQTLNKFENGTETPVLIMTTGTGAFGLNLTS-ANRIFIAELQWNPS-----VE 978

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDE----LVLQRLRTKSTIQD 192
               ++R  + G K+ V V   I ++T++E     + Q+   K  I  
Sbjct: 979  SQAISRAIRLGQKKEVRVTRYITKDTVEEVNRQDIKQQQEYKKQIAA 1025


>gi|86355628|ref|YP_473296.1| Global transactivator [Hyphantria cunea nucleopolyhedrovirus]
 gi|86198233|dbj|BAE72397.1| Global transactivator [Hyphantria cunea nucleopolyhedrovirus]
          Length = 495

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 67/226 (29%), Gaps = 37/226 (16%)

Query: 2   KQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
           + Y+  + E             +     +      +  Q+            + E     
Sbjct: 261 RVYNALKSESQRAYDDAVAGGDKLRSMQDVLWLLCRLRQMCCHPTLTKCAAMFTEQARIF 320

Query: 51  ---VHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTL---------- 94
                  K +    +++         +++   +   L  +                    
Sbjct: 321 EPSYESSKCRGALELVQRVLDTPNDKVVLVSQWVEFLQIVAGLLRHRGVPILLYTGQLRV 380

Query: 95  DKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           ++      ++N  +    ++       G GLNL  G + ++     W+ +     IE   
Sbjct: 381 EERTAVENQFNAIDSPYRVMLMSIKCGGVGLNLVGGNH-IIMLEPHWNPQ-----IELQA 434

Query: 153 VTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLN 196
             R  + G K+  +VY ++   +N+I+  +  R   K T  + + +
Sbjct: 435 QDRIHRMGQKKRTYVYKMLVDEENSIERYIKARQDKKLTFVNKVFD 480


>gi|295675065|ref|XP_002798078.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280728|gb|EEH36294.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1074

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 28/218 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 858  YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 911

Query: 64   EKANA--APIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEG-KI 109
            +         IV   + S L  +Q                  +L +    +  + +   +
Sbjct: 912  KSPEKAPIKSIVFSSWTSHLDLIQIALEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 971

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+        ++     Q ++R+      + G  R V    
Sbjct: 972  TILLATLGAGGVGLNLTS-GSRAYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1025

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLN--ALKKETIHV 205
             I +++I+E + +  R K  + D+ LN   L +  + +
Sbjct: 1026 FIMKDSIEEKIAELARKKQQMADMSLNRGRLDRRELQL 1063


>gi|47216738|emb|CAG01012.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 381

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + ++     +  N+ +  +      + G GL      + +VF  L+W+         + 
Sbjct: 41  PSSERIQLVHKFQNDPETRVAVLSIQAAGQGLTFTA-ASHVVFAELYWNPGHI-----KQ 94

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              R  + G   ++ V+YLIA+ T D ++   L  K T+    LN  K+
Sbjct: 95  AEDRAHRIGQTSSINVHYLIAKGTFDTVMWSMLNRKETVTGTTLNGKKE 143


>gi|323356807|ref|YP_004223203.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
 gi|323273178|dbj|BAJ73323.1| superfamily II DNA/RNA helicase, SNF2 family [Microbacterium
           testaceum StLB037]
          Length = 719

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +T       I  +N +  + +      + G GLN+Q   N+++    W   E+       
Sbjct: 592 QTSTARQAAIDAFNSDPDVGIAVCSLTAAGVGLNMQAASNVVLAELSWTAAEQT------ 645

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R  + G +  V  + +IA +TID  + + + +K  +    L+ 
Sbjct: 646 QAIDRVHRIGQEEPVTAWRIIAAHTIDTKIAELIDSKEGLAARALDG 692


>gi|125583090|gb|EAZ24021.1| hypothetical protein OsJ_07744 [Oryza sativa Japonica Group]
          Length = 1360

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+ K    ++ A   +C  G+ L  G + +V   + W+       + R  + 
Sbjct: 1224 REALMEAFNDMKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIG 1277

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G ++ V+ Y LI + T ++    R   K  +  LL +
Sbjct: 1278 RAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 1319


>gi|220931728|ref|YP_002508636.1| helicase domain protein [Halothermothrix orenii H 168]
 gi|219993038|gb|ACL69641.1| helicase domain protein [Halothermothrix orenii H 168]
          Length = 467

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 33/223 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-------- 53
           + Y+K    +  +     ++  +  +      +L + +                      
Sbjct: 204 ELYNKVTSYVKDEYNRRRVKKISILNLLTYQRELCSSSFALQRTLARSRDKSPYLRELYG 263

Query: 54  --------EKIKALEVIIEKANAAPIIVA---------YHFNSDLARLQKAFPQGRTLDK 96
                    KIK +E I++  +   II            H+          F    +   
Sbjct: 264 LARNIRTNAKIKEVEKILKGIDGQAIIFTEYRATQEFIAHYLEKRGYKTILFNGALSSSG 323

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  + +     +     +   GLNLQ+  N+++ + L W+  + +Q I R+     
Sbjct: 324 KEWIKYIFQQK--KDVLISTEAGSQGLNLQF-CNVIINYDLPWNPMKIEQRIGRV----- 375

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  + V +Y L  ++TI+E +L  L  K  +   ++  ++
Sbjct: 376 HRLGQTKDVLIYNLATKDTIEEKILNLLYNKINLFKEIIGNME 418


>gi|240274844|gb|EER38359.1| DNA repair helicase RAD5,16 [Ajellomyces capsulatus H143]
          Length = 1112

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +   +I+E+  +  I +L     + G GL+L    N  V   LWW+     + IE+
Sbjct: 832 MPIRQREKSIEEFSKDPAIRILVCSLRTAGTGLDLTA-ANKCVLVDLWWN-----EAIEQ 885

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  +   KR V    ++ +N+ID+ +      KS   D +L +
Sbjct: 886 QAFFRLFRINQKRKVEFVRVVVRNSIDDRLQLIQEDKSNNIDRVLGS 932


>gi|242777640|ref|XP_002479075.1| DNA excision repair protein (Rad5), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218722694|gb|EED22112.1| DNA excision repair protein (Rad5), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1183

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 44/171 (25%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKI-- 109
            +++    +  +V   F S L  +     +                    ++++N  +I  
Sbjct: 993  LLKLPPNSKSVVFSQFTSFLDLIGPQLTKAGLTHLRLDGSMPQKARAEVLRQFNRTEIYE 1052

Query: 110  --------------------------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                                       +L     + G GLNL    N +     WW    
Sbjct: 1053 ELESDEDAPKDGGASATHSKPPQPSPSILLISLRAGGVGLNLTA-ANNVFMMDPWWSFA- 1110

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                +E   + R  + G  R V V   + +++I+  +L+    K  I   L
Sbjct: 1111 ----VEAQAIDRVHRMGQLREVSVTRFVVKDSIEVRMLRVQERKMNIAGSL 1157


>gi|118576973|ref|YP_876716.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
 gi|118195494|gb|ABK78412.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
          Length = 574

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G++       I  + EG+  L+ A   +   G+NL      ++F  L W        I R
Sbjct: 444 GQSDRSRQDQIDSFQEGRSKLMIAGLRAGNVGINL-SRARYVIFAELDWSPA-----IHR 497

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G K  VF YYLI   T+DE V   L  KS   D +++ 
Sbjct: 498 QAEDRLHRIGQKNTVFAYYLIGNGTLDEHVANILVDKSYEIDSIMDE 544


>gi|222637530|gb|EEE67662.1| hypothetical protein OsJ_25277 [Oryza sativa Japonica Group]
          Length = 716

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI A+   +          ++  H  S L  + +              Q     +    
Sbjct: 521 AKIPAVLDYLGTIIEAECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLV 580

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N+  I        + G GL L    + ++F  L W   +           R  + G
Sbjct: 581 TDFQNKDDIKAAVLSIKAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIG 634

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 635 QVSSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 674


>gi|24581780|ref|NP_608883.1| Marcal1 [Drosophila melanogaster]
 gi|75027220|sp|Q9VMX6|SMAL1_DROME RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1
 gi|22945611|gb|AAF52182.2| Marcal1 [Drosophila melanogaster]
 gi|39752623|gb|AAR30193.1| RE44811p [Drosophila melanogaster]
 gi|220948472|gb|ACL86779.1| Marcal1-PA [synthetic construct]
          Length = 755

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           +E       E   A   A++ +     A              +     +  + II   + 
Sbjct: 487 KETLDAFNKELKTAKGRATEEILLRFYAR-TAEVKTRAVCAYLKTLVKEQKKFIIFAHHR 545

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQY 127
             +     F S L             D    ++  + +     +      +C  G+ L  
Sbjct: 546 VMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSGITLTA 605

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              I+VF  L W+             +R  + G  + V   YLIA NT D+++   L+ K
Sbjct: 606 -AEIIVFAELDWNPSTL-----AQAESRAHRIGQTKPVICRYLIAHNTADDIIWNMLKNK 659

Query: 188 STIQDLL 194
             +   +
Sbjct: 660 QEVLSKV 666


>gi|70732012|ref|YP_261757.1| SNF2 family helicase [Pseudomonas fluorescens Pf-5]
 gi|68346311|gb|AAY93917.1| helicase, SNF2 family [Pseudomonas fluorescens Pf-5]
          Length = 650

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 18/154 (11%)

Query: 55  KIKALEVIIEK-ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQE 103
           KI+    ++ +      +I+   F            +            +  K    I  
Sbjct: 484 KIRIAMDLLSELDPDDKVILFCEFKPTVAALKALCEEAGIGHVTLVGSDSPAKRQKAIDR 543

Query: 104 WN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  +    +     ++ G G NL    N + F  L W   +           R  + G  
Sbjct: 544 FQQDPDCRVFICTTSAAGTGNNLTA-ANYVFFLGLPWTPGQQD-----QAEDRAYRNGQL 597

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R V V   + + +ID+ + + L  K  +   L+ 
Sbjct: 598 RMVIVKIPLIEASIDQQLWELLLAKRQVSLELIE 631


>gi|169830699|ref|YP_001716681.1| helicase domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637543|gb|ACA59049.1| helicase domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1147

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
            A     +  +  +LA  A   +      ++   K    +       A  +++   F   
Sbjct: 451 NAEQVREEIAELRRLAEQAKTVESSDSEAKLSKLKDLLHKEGFFDQPAKRLLLFTEFKDT 510

Query: 81  LA----------RLQKAFPQGRTLDKDPC------TIQEWNEGKIPLLFAHPASCGHGLN 124
           L                   G                Q++ EG+I +L A  A+   G+N
Sbjct: 511 LTYLVGNLKTWGLKVGYIHGGMKPGSRDEPGTRLYAEQQFREGEIQVLVATEAAG-EGIN 569

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ   NIL  + + W+    +Q + RI      + G ++   ++  +A NTI+  VLQRL
Sbjct: 570 LQ-VCNILFNYDIPWNPNRLEQRMGRI-----HRYGQRKDCLIFNFVATNTIEGRVLQRL 623

Query: 185 RTKSTIQDLLLNA 197
             K       L+ 
Sbjct: 624 LEKLQEIRDALDD 636


>gi|329764968|ref|ZP_08256555.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138505|gb|EGG42754.1| SNF2-related protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 574

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           I  +E  +       +I              +   G++       I ++ +G+  L+ A 
Sbjct: 414 IMEIEESVVVFCHHKVIHKLLHEKLGEFSPVSIIGGQSDKMRQEAIDKFQKGESKLMIAG 473

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W        I R    R  + G K  VF YYLI   T
Sbjct: 474 LRAGNVGINLTR-AKYVIFAELDWSPA-----IHRQAEDRLHRIGQKNTVFAYYLIGNGT 527

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           +D+ V   L  KS   D +++ 
Sbjct: 528 LDDHVANILVDKSYEIDSIMDE 549


>gi|90961729|ref|YP_535645.1| Phage helicase [Lactobacillus phage Sal1]
 gi|90820923|gb|ABD99562.1| Phage helicase [Lactobacillus phage Sal1]
 gi|300214512|gb|ADJ78928.1| Phage helicase [Lactobacillus salivarius CECT 5713]
          Length = 407

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 77/198 (38%), Gaps = 23/198 (11%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y KF ++ Y +   + +    + +  +   QL+                 EK+  L  +I
Sbjct: 226 YRKFLKDKYLEFDNQELLGDTALTYLLGLRQLSG------------MYSKEKLDRLSDLI 273

Query: 64  EKANAAPIIVAYHFNSDLA----RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +      +I+ Y+F  +L       +        ++     +  +      +      + 
Sbjct: 274 DSTED-RLIIFYNFERELDEIVKIAKNKIRPISIVNGKTKNLTNYETKDNSITLIQYQAG 332

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             GLNLQ   N +V+F+     E ++Q  +RI      + G +R+ F Y LI + +++E 
Sbjct: 333 SMGLNLQK-ANKIVYFTPPQQSELYEQSKKRI-----HRIGQERSCFYYNLIVEKSVEER 386

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + + L+ +    D L  +
Sbjct: 387 IYRALKERRDYTDELFKS 404


>gi|121582847|ref|YP_973289.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
 gi|120596109|gb|ABM39547.1| SNF2-related protein [Polaromonas naphthalenivorans CJ2]
          Length = 1259

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 35/203 (17%)

Query: 24   NSASKTVKCLQLANGA------VYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAY 75
            N          +          ++  E          K+  L   +   ++     I+  
Sbjct: 886  NHLGLLHYLRLVCTDPRRHGLSIFKPEPISQYRASAPKLDWLLNQLGLIQSQGEKAIIFC 945

Query: 76   HFNSDLARLQKA----------------FPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
             F +    LQ                               I+ +       ++   P +
Sbjct: 946  EFRNIQRLLQHYIEEVFALQADIINGDTSASASHSASRQKRIKAFQAKPGFGVIILSPVA 1005

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---- 174
             G G+N+Q   N +V ++  W+  +     E     R  + G  R V+VY  +       
Sbjct: 1006 VGFGVNIQA-ANHVVHYTRTWNPAK-----EDQASDRAWRIGQTRDVYVYCPVVAAQDFT 1059

Query: 175  TIDELVLQRLRTKSTIQDLLLNA 197
            T D  + Q L  K ++   +LN 
Sbjct: 1060 TFDVKLDQLLERKRSLAGDMLNG 1082


>gi|320034532|gb|EFW16476.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 2050

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYH------FNSDL----ARLQKAFPQGRTLDKDPC 99
            H  +   L+ II++       +++  H      +  D+                +     
Sbjct: 1366 HSHRAAMLDQIIKQSINAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITNRQS 1425

Query: 100  TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N  +  + +      + G GLN+  G N +V F   ++        E   V R  
Sbjct: 1426 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPT-----WEEQAVGRAY 1479

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G ++ VFVY  IA  T ++++  +   K+ +   +++  KK  I 
Sbjct: 1480 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD--KKNPIR 1524


>gi|303318787|ref|XP_003069393.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240109079|gb|EER27248.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 2054

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYH------FNSDL----ARLQKAFPQGRTLDKDPC 99
            H  +   L+ II++       +++  H      +  D+                +     
Sbjct: 1370 HSHRAAMLDQIIKQSINAGDKVLIFSHSIPTLNYIEDVLKVNRWRYCRLDGTTPITNRQS 1429

Query: 100  TIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + +N  +  + +      + G GLN+  G N +V F   ++        E   V R  
Sbjct: 1430 ATKSFNKIDSPMQVYLISTKAGGLGLNI-PGANRVVIFDFAFNPT-----WEEQAVGRAY 1483

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G ++ VFVY  IA  T ++++  +   K+ +   +++  KK  I 
Sbjct: 1484 RFGQRKPVFVYRFIAGGTYEDIMYNKTVFKTQLSFRVVD--KKNPIR 1528


>gi|256378168|ref|YP_003101828.1| SNF2-related protein [Actinosynnema mirum DSM 43827]
 gi|255922471|gb|ACU37982.1| SNF2-related protein [Actinosynnema mirum DSM 43827]
          Length = 885

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 17/155 (10%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPC 99
            V   K++ L+ I+ +   N   +IV  ++ + L  +                   +   
Sbjct: 697 GVKSVKLQRLKEIVAEAEENERKVIVFSNYRAVLDLVANALPGEVFGPLTGAVPPARRQQ 756

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  ++      +L A   + G GLN+Q   +++V               E   + R  +
Sbjct: 757 VVDGFSSAEHGAVLVAQIVAGGVGLNIQA-ASVVVICEPQLKPTT-----EAQAIARAHR 810

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            G  R V V+ L+++  +D  + + L  K+ + D 
Sbjct: 811 MGQVRTVQVHRLLSEEGVDRRITELLARKAKLFDE 845


>gi|218191274|gb|EEC73701.1| hypothetical protein OsI_08293 [Oryza sativa Indica Group]
          Length = 1363

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 97   DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N  K    ++ A   +C  G+ L  G + +V   + W+       + R  + 
Sbjct: 1227 REALMEAFNNMKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIG 1280

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G ++ V+ Y LI + T ++    R   K  +  LL +
Sbjct: 1281 RAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 1322


>gi|240278273|gb|EER41780.1| transcription termination factor 2 [Ajellomyces capsulatus H143]
          Length = 536

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 26/216 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y    R  Y   Q   +       +  K  Q      Y       K +    +  +E   
Sbjct: 320 YTAITRRGYEKFQESQLSRREGPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 373

Query: 64  --EKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWN-EGKI 109
                     IV   + S L  ++ A                TL +    I  +  +  +
Sbjct: 374 EAPDEAPIKSIVFSSWTSHLDLIEIAMEDNGITTFTRLDGTMTLKQRNAAIDAFREDDNV 433

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   + G GLNL   G+ +      ++     Q ++R+      + G  R V    
Sbjct: 434 TILLATLGAGGVGLNLTA-GSRVYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 487

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I +++I+E + +  R K  + D+ LN  + +   +
Sbjct: 488 FIMKDSIEEKIAELARKKQQMADMSLNRGRLDRREL 523


>gi|296809167|ref|XP_002844922.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma otae CBS
            113480]
 gi|238844405|gb|EEQ34067.1| chromatin-remodeling complex ATPase chain isw-1 [Arthroderma otae CBS
            113480]
          Length = 1771

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPC 99
            H  +I+ +  I+++       +++   +   L           +          +     
Sbjct: 1308 HSRRIQMVGQIVDESIKAGDKVLIFSGYLYTLTYIGTMLAAKGQKFCRLDGKTPIATRQA 1367

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              + ++     +      +   GLN+  G N ++ F   ++        E   + R  + 
Sbjct: 1368 ATKSFSNSDSQVYLISTKAGALGLNI-IGANRVIIFESEYNPT-----WEEQAIGRAYRL 1421

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G  + VFVY  +   T +EL+ ++   K  +    ++
Sbjct: 1422 GQTKDVFVYRFVMGGTFEELIHEKGVFKKNMALRAVD 1458


>gi|324526853|gb|ADY48722.1| Transcription activator BRG1 [Ascaris suum]
          Length = 245

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +  +      + G GLNLQ   + ++ F   W+  +           R  + G  R V
Sbjct: 20  DSEYFIFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDM-----QAQDRAHRIGQSREV 73

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V  L+  N+I+E +L   R K  + + ++ A K
Sbjct: 74  RVLRLVTVNSIEEKILAAARYKLNVDEKVIQAGK 107


>gi|120536993|ref|YP_957051.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326827|gb|ABM21136.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 906

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +     +  ++ +  +      + G GL L      ++F  L W            
Sbjct: 735 PNEQRQAQADRFQSDEQCKVFVGTIQAAGVGLTLTA-AQTVLFAELDWVPGNM-----NQ 788

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              R  + G    V VY+   + +ID  +++RL  K    D  L A   E 
Sbjct: 789 AEDRAHRIGQLDHVLVYHTAVEGSIDTQMIRRLIEKQQTIDEALEAGDIEM 839


>gi|93005784|ref|YP_580221.1| SNF2-related [Psychrobacter cryohalolentis K5]
 gi|92393462|gb|ABE74737.1| SNF2-related [Psychrobacter cryohalolentis K5]
          Length = 1075

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y +   +     +  +               +    + + E+    +    +     + 
Sbjct: 855  LYKQVSNDYRSLSEQGHKGVM--LKALHDMRMICAHPLNFQEQATINDSPKAEWLINTLE 912

Query: 63   IEKANAAPIIVAYHFNSDLARLQK----------------AFPQGRTLDKDPCTIQEWNE 106
              K     +I+   F +    L++                +    R        I ++ E
Sbjct: 913  TIKQKNEKVIIFTEFRAIQVFLKRLLLERFGLNVTTVNGDSNTNSRVGLTRQGIIDKFQE 972

Query: 107  GK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 ++     + G G+N+Q   N ++ ++  W+  +     E     R  + G  + V
Sbjct: 973  TNGFNVIILSTVAVGFGVNIQK-ANHVIHYTRSWNPAK-----EDQATDRAYRIGQDKEV 1026

Query: 166  FVYYL-IAQN---TIDELVLQRLRTKSTIQDLLLN---ALKKETIH 204
            +VYY  IA +   T +  + + L +K ++ D +L     L +E I 
Sbjct: 1027 YVYYPSIAADDFETFEIKLDKLLSSKRSLADDMLKPNVELTQELIQ 1072


>gi|212533265|ref|XP_002146789.1| DNA excision repair protein (Rad5), putative [Penicillium marneffei
            ATCC 18224]
 gi|210072153|gb|EEA26242.1| DNA excision repair protein (Rad5), putative [Penicillium marneffei
            ATCC 18224]
          Length = 1175

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +    +L     + G GLNL    N +     WW        +E   + R  + G  R V
Sbjct: 1067 QPSPNVLLISLRAGGVGLNLTA-ANNVFMMDPWWSFA-----VEAQAIDRVHRMGQLREV 1120

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V   + +++I+  +L+    K  I   L
Sbjct: 1121 SVTRFVVKDSIEVRMLRVQEKKMNIAGSL 1149


>gi|115463703|ref|NP_001055451.1| Os05g0392400 [Oryza sativa Japonica Group]
 gi|113579002|dbj|BAF17365.1| Os05g0392400 [Oryza sativa Japonica Group]
          Length = 450

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
            +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 215 PMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGK 274

Query: 88  ---FPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 275 EILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLT-GASRVVLLDVVWNP 333

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 334 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 383


>gi|149184885|ref|ZP_01863202.1| hypothetical protein ED21_17567 [Erythrobacter sp. SD-21]
 gi|148830996|gb|EDL49430.1| hypothetical protein ED21_17567 [Erythrobacter sp. SD-21]
          Length = 1270

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 35/221 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--VHDEKIKAL 59
           + Y           +     A             +          +  E      +++  
Sbjct: 747 QAYDLVLARARALRESGEQGAM--LKVLHMLRGTSLHPSPPRGISNIDEYIGQSARLQKT 804

Query: 60  EVIIEKAN--AAPIIVAY------HFNSD-------LARLQKAFPQGRTLDKDPCTIQEW 104
             I+E+        ++         F +        L R            K    +  +
Sbjct: 805 FEILEEVKQRGEKALLFCEDLEMQTFLAMAIQERFALERRPMCISGKVAGHKRQEMVTAF 864

Query: 105 NEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                   +L   P + G GL +    N ++  S WW+       +E     R  + G  
Sbjct: 865 QSSPASFDVLILSPKAGGVGLTITA-ANNVIHLSRWWNPA-----VEDQATDRAYRIGQT 918

Query: 163 RAVFVYYLIA--------QNTIDELVLQRLRTKSTIQDLLL 195
           R V ++  +A         ++ D+ +   +  K ++   LL
Sbjct: 919 RPVTIHIPMAVHPDEAIGPSSFDQRLDALMERKRSLSRGLL 959


>gi|297835518|ref|XP_002885641.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331481|gb|EFH61900.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1122

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                          I  +N+      +L A   +C  G++L  G + +V   + W+    
Sbjct: 967  FMHGKVEQRDRQHLIDNFNKPDSGSKVLLASTKACSEGISL-VGASRVVILDVVWNPS-- 1023

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               +E   ++R  + G KRAVF+Y+L+ ++T +     +   K  I +L+ ++  ++
Sbjct: 1024 ---VESQAISRAFRLGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEK 1077


>gi|242060152|ref|XP_002451365.1| hypothetical protein SORBIDRAFT_04g000808 [Sorghum bicolor]
 gi|241931196|gb|EES04341.1| hypothetical protein SORBIDRAFT_04g000808 [Sorghum bicolor]
          Length = 160

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
               +   PL        G G+NL    + ++      +  +     +   V R  + G 
Sbjct: 31  NFQRKDGPPLFLLTTKVGGVGINLTA-ASRVIIIDPSDNPCD-----DNQAVDRTYRIGQ 84

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R V VY L+   TI+E   ++   K    + +L  
Sbjct: 85  VRDVIVYRLVTCGTIEEHTYRQQTLKVETSNDVLEG 120


>gi|54287520|gb|AAV31264.1| unknown protein [Oryza sativa Japonica Group]
 gi|260401074|gb|ACX37088.1| helicase superfamily C-terminal domain containing protein [Oryza
           sativa Japonica Group]
          Length = 446

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
            +      +  E    +     V + +A    +++   F   L  +++            
Sbjct: 211 PMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGK 270

Query: 88  ---FPQGRTLDK-DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                 G+ L +    +I+ +N       +L A   +C  G++L  G + +V   + W+ 
Sbjct: 271 EILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLT-GASRVVLLDVVWNP 329

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + R  ++R  + G K+ V+ Y LI   T +     R   K  +  L+ +
Sbjct: 330 A-----VGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS 379


>gi|325972430|ref|YP_004248621.1| SNF2-related protein [Spirochaeta sp. Buddy]
 gi|324027668|gb|ADY14427.1| SNF2-related protein [Spirochaeta sp. Buddy]
          Length = 663

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 16/157 (10%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCT 100
             K++ +  +I         +IV   F   +  L+               G+T +     
Sbjct: 487 STKLRTVLNLISDLVKQGNKVIVWTIFVQTMQDLRNLIQKELGLSVELLNGQTKNFRAEI 546

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           I+E+     +P++ A+P++    ++L    +  ++  + ++   + Q  +RI        
Sbjct: 547 IEEFKHSDALPVVIANPSAVSESISLHTCCHHAIYLDMSYNAVHYIQSKDRIHRLG---L 603

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +   F YY+ A NTIDE V  R+  K    +  + 
Sbjct: 604 SPEIKTFYYYIQANNTIDERVYSRVIMKEVRMNQAIE 640


>gi|260174557|ref|ZP_05760969.1| helicase domain protein [Bacteroides sp. D2]
          Length = 1046

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 25/213 (11%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKH--------WKEVHDEKIKA 58
           +   Y D  GE +     +     +  Q+A+    Y  ++         ++   D K++ 
Sbjct: 439 EDNSYTDYDGEEVLTQGGALGLVQRKRQVASSVWGYLNKETDLDRGIDAFESCPDAKVEE 498

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNEG 107
           L+ II    K+    ++V   F   L  L          A      ++     + ++ + 
Sbjct: 499 LQRIIEAVFKSGTKKLVVFALFRRTLKYLHIRLKKAGYNALIIHGQVENRAEILTQFKKD 558

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K   +         GL++Q+  N +V + L W+    +Q I RI    Q+     + V +
Sbjct: 559 KNTHILLSSEVGSEGLDMQF-CNSMVNYDLPWNPMVVEQRIGRIDRFGQK----AKVVNI 613

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           Y L+   +I E +  RL  +  I    +  ++ 
Sbjct: 614 YNLVVAGSIQEEIYMRLLERIGIFRGTIGDMEA 646


>gi|124359580|gb|ABN05984.1| HMG-I and HMG-Y, DNA-binding; Bromodomain; Helicase, C-terminal
           [Medicago truncatula]
          Length = 1069

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 60/229 (26%)

Query: 30  VKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
           ++  +  N  +          K +      K+  L+ I+ K       +++       L 
Sbjct: 137 MELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLD 196

Query: 83  RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
            L++     R + +              I ++N       +      + G GLNLQ   +
Sbjct: 197 ILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQS-AD 255

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----------------- 173
            +V +    + +      E   V R  + G KR V V Y+ A                  
Sbjct: 256 TVVIYDPDPNPKN-----EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEMRIGG 310

Query: 174 ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                           +I+ L+     + K  + D ++NA +  + T H
Sbjct: 311 TIDMEDELAGKDRYIGSIESLIRSNIQQYKIDMADEVINAGRFDQRTTH 359


>gi|147676741|ref|YP_001210956.1| hypothetical protein PTH_0406 [Pelotomaculum thermopropionicum SI]
 gi|146272838|dbj|BAF58587.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 140

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G  P +     + G GLNL      ++ + LWW+       +E     R  + G  R V 
Sbjct: 35  GAAPFMVVSLKAGGTGLNLTA-ATHVIHYDLWWNPA-----VEDQATDRTYRIGQTRTVM 88

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V+ LI+  T +E +   + +K  +  L + A +
Sbjct: 89  VHRLISLGTFEEKINTMMASKRELAGLTVAAGE 121


>gi|330900255|gb|EGH31674.1| SNF2-related:helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 244

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 33/207 (15%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +    +         +  ++     QL               +   K++ L  ++ + 
Sbjct: 49  LSQTERDEYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAEL 93

Query: 67  N-AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ-EWNEGKIPLLFA 114
           +    +I+   +   +A L++   +            +  K    I     +    +   
Sbjct: 94  DVDDKVILFCEYQESVATLREHCLKLGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIG 153

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             ++ G G NL    N + F  L W               R  + G  R V V   +A++
Sbjct: 154 TRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAED 207

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKE 201
           TID+ + Q L  K  +   L++   +E
Sbjct: 208 TIDQQLWQMLMDKRALASDLIDPEAEE 234


>gi|329954230|ref|ZP_08295324.1| helicase protein [Bacteroides clarus YIT 12056]
 gi|328527936|gb|EGF54922.1| helicase protein [Bacteroides clarus YIT 12056]
          Length = 562

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 24/215 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
           +Y K + +L   L+          +K+++      G V              KIKA    
Sbjct: 351 EYEKAESDLIQYLRVFKNADDEKIAKSMR------GEVMVRMGILKAISARGKIKAAAEF 404

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-------EWNEGKIPLLF 113
           I         +IV  +    +  L+K FPQ  T+  +   I+         N     L+ 
Sbjct: 405 IHDVIDGGEKLIVFAYLKEVVMELKKMFPQAVTVTGEDNAIRKQMSVDAFQNNPDCTLII 464

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +  S G GL L    + + F    W   + +         R  + G K  V  YY + +
Sbjct: 465 LNYKSGGTGLTLTA-SSRVAFIEFPWTFSDCE-----QAEDRAHRNGQKNNVNCYYFLGK 518

Query: 174 NTIDELVLQRLRTKSTIQDLLL---NALKKETIHV 205
           NTIDE +   ++ K  I + +    + +K+  I +
Sbjct: 519 NTIDEYMYDVIQRKKGIANGVTGTDDVVKENVIDM 553


>gi|302819025|ref|XP_002991184.1| hypothetical protein SELMODRAFT_429540 [Selaginella moellendorffii]
 gi|300141012|gb|EFJ07728.1| hypothetical protein SELMODRAFT_429540 [Selaginella moellendorffii]
          Length = 1524

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 29/156 (18%)

Query: 52   HDEKIKALEVIIEKAN------------AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
               KI A+   +                    +V   + S L  ++    +     +   
Sbjct: 960  SSSKINAVMERLMNLPVTSPAAAGKKAVTEKALVFSQWTSLLDLVEPRLEKAGLEFRRLD 1019

Query: 98   --------PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                       + E+NE  ++ ++         GLN+    + ++   +WW+       +
Sbjct: 1020 GTMSVMERDAAVCEFNEKPEVSVMLMGLKVGSLGLNMVAACH-VLLLDVWWNPT-----V 1073

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            E   + R  + G  R V V     + TI++ +L   
Sbjct: 1074 EDQAIDRAHRIGQTRDVHVTRFTVKKTIEDRILALQ 1109



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 21/103 (20%), Gaps = 6/103 (5%)

Query: 4   YHKFQRELYCDLQGENI------EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y   ++      Q             N     ++  Q         E+K  K   +E   
Sbjct: 826 YDSLEQRSRDKFQSYQRRGTVQKNYANIMVLLLRLRQACCHRSLVPEDKESKIEDEESNI 885

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             +  +             F S    +  +      L      
Sbjct: 886 DAKENVSICTICEDAPEQPFLSCCGHVFCSQCISEKLLTSEEL 928


>gi|224009730|ref|XP_002293823.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970495|gb|EED88832.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 487

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 50/222 (22%)

Query: 4   YHKFQRELYC--DLQGENIEAFNSASKTVKC---LQLANGAVYYDEEKHWKEVH------ 52
           Y +   +      L  + IE   + S+T K     +  N    + E              
Sbjct: 272 YAQMIEQGVLRDMLLNQGIEQARTLSQTNKQMNHRKNCNHPFMFGEPIDPASGAHMGSAH 331

Query: 53  -------DEKIKALEVIIEKANAAPI--IVAYHFNSDL----------ARLQKAFPQGRT 93
                    K   L+ ++E+        ++     S L                      
Sbjct: 332 PQLLIRASGKFALLDRMLERLFKDKHQVLIFSQMTSLLNVIEDYLLFRQWKYCRIDGSTK 391

Query: 94  LDKDPCTIQEWN--------------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +D+    +  +N              + +  +      + G G+NL    +  + F   W
Sbjct: 392 IDERQRQMDVFNSEKTAGKGGTRNDGDDRHFVFLLSTRAGGLGINL-ATADTCIIFDSDW 450

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           +  +     +   + R  + G  R V VY L+  N++D  ++
Sbjct: 451 NPHQ-----DSQAMDRCHRIGQNRPVAVYRLLTVNSVDVEMM 487


>gi|315922824|ref|ZP_07919064.1| helicase [Bacteroides sp. D2]
 gi|313696699|gb|EFS33534.1| helicase [Bacteroides sp. D2]
          Length = 1022

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 25/213 (11%)

Query: 8   QRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKH--------WKEVHDEKIKA 58
           +   Y D  GE +     +     +  Q+A+    Y  ++         ++   D K++ 
Sbjct: 415 EDNSYTDYDGEEVLTQGGALGLVQRKRQVASSVWGYLNKETDLDRGIDAFESCPDAKVEE 474

Query: 59  LEVII---EKANAAPIIVAYHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNEG 107
           L+ II    K+    ++V   F   L  L          A      ++     + ++ + 
Sbjct: 475 LQRIIEAVFKSGTKKLVVFALFRRTLKYLHIRLKKAGYNALIIHGQVENRAEILTQFKKD 534

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K   +         GL++Q+  N +V + L W+    +Q I RI    Q+     + V +
Sbjct: 535 KNTHILLSSEVGSEGLDMQF-CNSMVNYDLPWNPMVVEQRIGRIDRFGQK----AKVVNI 589

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           Y L+   +I E +  RL  +  I    +  ++ 
Sbjct: 590 YNLVVAGSIQEEIYMRLLERIGIFRGTIGDMEA 622


>gi|258572168|ref|XP_002544846.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905116|gb|EEP79517.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1932

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                       +       + +N  +  + +      + G GLN+  G N ++ F   ++
Sbjct: 1423 WTYCRLDGTTPISSRQVATKYFNRTDSPMQVYLISTKAGGLGLNI-PGANRVIIFDFAFN 1481

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                    E   V R  + G  + VFVY  ++  T ++ +  R   K+ +   +++  KK
Sbjct: 1482 PT-----WEEQAVGRAYRFGQTKPVFVYRFVSGGTYEDAMYNRTVFKTQLSFRVID--KK 1534

Query: 201  ETIH 204
              I 
Sbjct: 1535 NPIR 1538


>gi|115473589|ref|NP_001060393.1| Os07g0636200 [Oryza sativa Japonica Group]
 gi|50508331|dbj|BAD30182.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin a-like [Oryza sativa Japonica Group]
 gi|113611929|dbj|BAF22307.1| Os07g0636200 [Oryza sativa Japonica Group]
 gi|215697224|dbj|BAG91218.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 747

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI A+   +          ++  H  S L  + +              Q     +    
Sbjct: 552 AKIPAVLDYLGTIIEAECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLV 611

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N+  I        + G GL L    + ++F  L W   +           R  + G
Sbjct: 612 TDFQNKDDIKAAVLSIKAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIG 665

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 666 QVSSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 705


>gi|315505011|ref|YP_004083898.1| snf2-related protein [Micromonospora sp. L5]
 gi|315411630|gb|ADU09747.1| SNF2-related protein [Micromonospora sp. L5]
          Length = 621

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQE 103
            K++ L  ++++   N   ++V  +F   L R++ +     T               + E
Sbjct: 425 AKVERLREVVQEAADNQWKVVVFSYFLEVLDRVRASLHDSPTFLLTGAIAPAARQQVVDE 484

Query: 104 WNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++      +L +     G GLNL    +++V               E   + R  + G  
Sbjct: 485 FSALDGHAVLISQITVGGVGLNLPA-ASVVVLTEPQLTPAA-----EEQAIRRCYRMGQT 538

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R V V+ L+A+NT+D+ +L+ L  K+ +   
Sbjct: 539 RGVRVHRLLARNTVDQRLLEMLGRKTALIRA 569


>gi|84498682|ref|ZP_00997435.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381019|gb|EAP96906.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 721

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +         + +I ++     + G GLNLQ   N+++    W   E+         
Sbjct: 584 PKVRKANIEAFLTDPEISVVVCSLTAAGVGLNLQVASNVVLAELSWTSAEQT------QA 637

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + R  + G    V  + +IA  TID  + + +  K+ +    L+   +E 
Sbjct: 638 IDRVHRIGQTEPVTAWRIIAAQTIDSRLAELIDDKAGLAARALDGSDEEV 687


>gi|226286603|gb|EEH42116.1| DNA repair protein RAD16 [Paracoccidioides brasiliensis Pb18]
          Length = 1092

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 26/216 (12%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 876  YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 929

Query: 64   EKANA--APIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEG-KI 109
            +         IV   + S L  +Q                  +L +    +  + +   +
Sbjct: 930  KSPEKAPIKSIVFSSWTSHLDLIQIALEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 989

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L A   + G GLNL   G+        ++     Q ++R+      + G  R V    
Sbjct: 990  TILLATLGAGGVGLNLTS-GSRAYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 1043

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I +++I+E + +  R K  + D+ LN  + +   +
Sbjct: 1044 FIMKDSIEEKIAELARKKQQMADMSLNRGRLDRREL 1079


>gi|170780922|ref|YP_001709254.1| hypothetical protein CMS_0479 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155490|emb|CAQ00599.1| hypothetical protein CMS0479 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 197

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHFNS-------DLARLQKAFPQGRTLDKDPCTIQE 103
             K + +  I+ +        +V   F          L R   A   G T D+D    + 
Sbjct: 11  SPKYQEVLAIVSENAARGRKTLVWSTFIRSINTLERVLGRFGPAVVHGGTPDRDEQIRRF 70

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            ++    +L ++PA+ G G++L +  +  V+    +      Q ++RI           R
Sbjct: 71  KHDDDCMVLLSNPATLGEGISLHHECHDAVYVDRDFAAGRFLQSLDRIHRLGLPPGTSTR 130

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V V  L ++ T+DE+V  RL  K      +L+ 
Sbjct: 131 -VTV--LASERTVDEVVAARLGAKLAFMGGILDD 161


>gi|47212607|emb|CAF93283.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 905

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 20/205 (9%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           MK   K  +        +  +     S + K L L             +     K K   
Sbjct: 40  MKVLEKLLKYYL-----QRKDKVLLFSLSTKLLDLLESFCMAQGLDFSRLDGTTKAKDRV 94

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT---------IQEWNEGKIPL 111
            I+++ N++  I     ++ L   ++                       I  +      +
Sbjct: 95  QIVKEFNSSTHINLCLVSTLLVEEKQFLTHFSVFHLLKILFALFKILCPIAFFCALYSNI 154

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            F    + G GLN   G N++V F   W+        +   + R  + G  R V V  LI
Sbjct: 155 FFYIIRAGGLGLNF-VGANVVVLFDPTWNPAS-----DLQAIDRAYRIGQIRNVTVLRLI 208

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLN 196
           +  T++E++  R   K  +Q  +L 
Sbjct: 209 SLGTVEEVIYLRQVYKQQLQCSVLG 233


>gi|298705202|emb|CBJ28633.1| SNF2 helicase [Ectocarpus siliculosus]
          Length = 2420

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------PCTIQEWNE-GKIPLL 112
             I+    +   +V   ++  L  ++ AF +                 ++ +   G    L
Sbjct: 2114 DILALGPSDKCLVFSQWDDMLDIVELAFKENGVSYARMKGKNRSELALEAFRAEGGPRAL 2173

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +  HGLNL    N +       +       +E   V R  + G  R   ++  I 
Sbjct: 2174 MLPIKTGSHGLNL-VEANHVFLLEPLLNAA-----VEAQAVNRVHRGGQTRPTTIHRFIV 2227

Query: 173  QNTIDELVLQRLRTKSTIQ 191
            + TI+E + +  + K+++ 
Sbjct: 2228 RGTIEEDIERLRKKKTSLA 2246


>gi|302896484|ref|XP_003047122.1| hypothetical protein NECHADRAFT_122747 [Nectria haematococca mpVI
           77-13-4]
 gi|256728050|gb|EEU41409.1| hypothetical protein NECHADRAFT_122747 [Nectria haematococca mpVI
           77-13-4]
          Length = 834

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 19/176 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQG 91
           ++   +   +  +    +E +         I+   +   L                    
Sbjct: 658 HEHYFNNTGISTKMRAIIEDVRVDLGTTKSIIFSCWTRTLHLLSKHLEEAKIPFHQIDGD 717

Query: 92  RTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + K    +  +     + +L     +   GLNL    N +    L W+       +E 
Sbjct: 718 CPIPKRQAKLDAFDKNDDVQVLIMTTGTGAFGLNLT-CANRIFIAELQWNPS-----VEN 771

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTID--ELVLQRLRTKSTIQDLLLNALKKETIH 204
             + R  + G +  V V   I ++T++  + ++ + R K  +  L  +   ++ + 
Sbjct: 772 QAIARAIRLGQENEVRVTRYIIKDTVEVMQEMMAQQRHKKNLAALGFDDYDEDWMD 827


>gi|6735309|emb|CAB68136.1| helicase-like protein [Arabidopsis thaliana]
          Length = 1496

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 65/198 (32%), Gaps = 30/198 (15%)

Query: 11   LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANA 68
            L  ++  E      +   T +             +         K++ L++++++  A  
Sbjct: 1165 LIQEIDSELPVVQPALQLTHRIFGSC--PPMQSFDPAKLLTDSGKLQTLDILLKRLRAGN 1222

Query: 69   APIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKIPLLFAHPA 117
              +++       L  L+                   +D+        +   I +      
Sbjct: 1223 HRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1282

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+NL    + ++F+   W+        +   + R  + G  +           T++
Sbjct: 1283 AGGLGINLTA-ADTVIFYESDWNPTL-----DLQAMDRAHRLGQTKD---------ETVE 1327

Query: 178  ELVLQRLRTKSTIQDLLL 195
            E +L R   K+T+Q L++
Sbjct: 1328 EKILHRASQKNTVQQLVM 1345


>gi|15615380|ref|NP_243683.1| Snf2/Rad54 family helicase [Bacillus halodurans C-125]
 gi|10175438|dbj|BAB06536.1| helicase (Snf2/Rad54 family) [Bacillus halodurans C-125]
          Length = 566

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQE 103
             K +    +I++ N   +I+   + +    LQ             +G         +++
Sbjct: 356 HAKAEKALELIQQIND-KVIIFTEYRATQLYLQWYLKQHGISSVPFRGGFKRGKKDWMRQ 414

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
             E +  +L A   + G G+NLQ+  + ++ + L W+    +Q I RI      + G   
Sbjct: 415 LFENRAQVLIAT-EAGGEGINLQF-CHHIINYDLPWNPMRIEQRIGRI-----HRLGQTE 467

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            V +Y    ++TI+E +L  L  K  + + ++  L
Sbjct: 468 DVRIYNFAVKDTIEEQILTLLYEKIQLFERVVGEL 502


>gi|326333794|ref|ZP_08200027.1| SNF2 domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325948376|gb|EGD40483.1| SNF2 domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 905

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA--------RLQKAF 88
            +   +    +     K++ L  I+ +   N   +IV  HF   L          +    
Sbjct: 696 FMAMRQAAMLQGTSSAKVERLIEIVGEAEENGRRVIVFSHFRKVLDDLVTLLPGEVFGPL 755

Query: 89  PQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 ++    + E++  G   +L     + G GLN+Q   +++V              
Sbjct: 756 TGSVPAEERQQMVDEFSAAGHGAVLVTQIVAGGVGLNIQA-ASVVVICEPQLKPT----- 809

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           IE   + R R+ G  ++V V+ L+++  +D+ V   L  K+ + D 
Sbjct: 810 IEWQAIARARRMGQLQSVQVHRLLSEVGVDQRVHDILAAKAELFDD 855


>gi|295695376|ref|YP_003588614.1| helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295410978|gb|ADG05470.1| helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 572

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 38/226 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV-------YYDEEKHWKEVHDEKI 56
           Y      +  + +     + N         ++ +             +++        ++
Sbjct: 290 YEAVTAFIREEYRRRIDTSQNVLHLITLQREMCSSPYAALNTLERMAKDEAHPPGFRARL 349

Query: 57  KALEVI---------------IEKANAAPIIVAYHFN-------SDLARLQKAFPQGRTL 94
             L  +               +       +IV   +          + R        R  
Sbjct: 350 LELCELGARIPTYTKVETTIDLVNQIHDKVIVFTEYRASQDFLLYMMKRRGIPAVPFRGG 409

Query: 95  DKD--PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            +      +++    +  ++ A   + G GLNLQ+  N ++ F L W+    +Q I RI 
Sbjct: 410 FQRGKKDWMKDIFSKRAQVMVAT-EAGGEGLNLQF-CNQIINFDLPWNPMRVEQRIGRI- 466

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                + G  R VF++ L   +TI++ +++ L+ K  + +L++  L
Sbjct: 467 ----HRLGQTRDVFIHNLATADTIEQYIVELLQEKIRLFELVIGEL 508


>gi|294659540|ref|XP_002770598.1| DEHA2G08800p [Debaryomyces hansenii CBS767]
 gi|199434043|emb|CAR65933.1| DEHA2G08800p [Debaryomyces hansenii]
          Length = 1225

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-------------K 86
            +Y  +           I  L+++ E++    ++V   F+S L  ++              
Sbjct: 1038 LYLYDPTKTSSKIQCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVY 1097

Query: 87   AFPQGRTLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             F     +++    ++ +    +E K+ +L     + G GLNL    +       WW   
Sbjct: 1098 KFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1156

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 +E   + R  + G    V V   I  ++I+  +L+    K  I + +
Sbjct: 1157 -----VEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKIQERKKQIGEAV 1203


>gi|118104167|ref|XP_425043.2| PREDICTED: similar to RP11-346B7.2 [Gallus gallus]
          Length = 1132

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 26/185 (14%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +  ++   +     I     + K     QL N      + K        K+  +      
Sbjct: 493 QLSKDAAFE----TISDPKYSGKMRVLQQLLNHFRKNKD-KVLLFSFSTKLLDVLEQYCI 547

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLN 124
           A+                  +        +     ++E+N   +I +      + G GLN
Sbjct: 548 ASG--------------LDFRRLDGSTKSEDRIRIVREFNRVPEINICLVSTMAGGLGLN 593

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
              G N+++ F   W+        +   + R  + G  + V V+ LI+  T++E++  R 
Sbjct: 594 F-VGANVVILFDPTWNPAN-----DLQAIDRAYRIGQCKDVKVFRLISLGTVEEMMYLRQ 647

Query: 185 RTKST 189
             K  
Sbjct: 648 VYKQR 652


>gi|308161598|gb|EFO64037.1| Transcription regulatory protein SNF2 [Giardia lamblia P15]
          Length = 2076

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
              K++ L+ I+ K +     +++   F                    F            
Sbjct: 1090 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRRYNFVRFDGSVKDVDRNSM 1149

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N+      +      +  HGLNLQ   + ++ F   ++        ++    R  +
Sbjct: 1150 IRGYNKEDSKDFVFLLSTRAASHGLNLQT-ADTVIIFDCDYN-----GTYDQQAQDRCYR 1203

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1204 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1242


>gi|221058551|ref|XP_002259921.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|193809994|emb|CAQ41188.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1445

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHD---EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
             K  QL +      + +    V       +K ++ ++   N    I       +  +   
Sbjct: 1241 TKLKQLFDHIQDDMKNELHIVVFSQWIGFLKIIQKLLTLHNIPNKIYDGSLTYEERKTTL 1300

Query: 87   AFPQGRTLDKDPCTIQEWN--------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             +   +        I                 +L     + G GLNL    + +    LW
Sbjct: 1301 LWFNIQKGKVYQPGIGFTKPSSPIPVENVSGKVLLCSLKAGGVGLNLT-VSSKVYLMDLW 1359

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            W+       IE     R  + G  + V +Y  + + T++E +LQ  ++K    + +L
Sbjct: 1360 WNPA-----IEDQAFERVHRIGQLKDVSIYKFVLEKTVEERILQIHQSKQYTANQIL 1411


>gi|8489199|gb|AAF75617.1|AF216814_8 unknown [Lactococcus lactis subsp. lactis bv. diacetylactis]
          Length = 850

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    +   TI  +  G+  +L  +P +    ++L    +  ++    ++L    Q  
Sbjct: 716 YGGIGARQREETIVAFQNGEFDVLITNPHTLAESVSLHKIAHDAIYLEYSFNLTHMLQSR 775

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA----- 197
           +RI           +    YY + +       TID  +  RL  K  I    + +     
Sbjct: 776 DRIHRLG---LPENQETNYYYFMTEGQEGKRGTIDRKIYSRLLAKKDIMYEAIESELIKP 832

Query: 198 -----LKKETIHV 205
                 K E + +
Sbjct: 833 EFTIDDKAEILQM 845


>gi|328778817|ref|XP_624010.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Apis mellifera]
          Length = 673

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 7/190 (3%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           K  +E+    +    +  N+  K    LQ  N +    ++     V    I   + II  
Sbjct: 407 KIGKEMLEISKKLEKKVLNNLEKHNTLLQYYNESSIAKQKAICDYVSKLFINKQKCIIFA 466

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLN 124
            +   +         +             ++    I ++      +       +   G+ 
Sbjct: 467 HHHNILNAICEVVESMNIKFIRIDGKTNPERRKYEIDKFQNNDSYIAAVLSITAANAGIT 526

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L     +++F  L+W+              R  + G  + V + YL+A++T D+ +   +
Sbjct: 527 LTA-AQLVIFAELFWNPGILC-----QAEDRVHRIGQYKNVIIQYLVAKHTADDYLWPLI 580

Query: 185 RTKSTIQDLL 194
           + K  + + +
Sbjct: 581 QKKMNVLNEV 590


>gi|302775146|ref|XP_002970990.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
 gi|300160972|gb|EFJ27588.1| hypothetical protein SELMODRAFT_171818 [Selaginella moellendorffii]
          Length = 692

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +     +  N  K+        + G GL L    + ++F  + W   +         
Sbjct: 522 PVIRQSMVDKFQNNEKVRAAVLSIRAAGLGLTLTS-ASTVIFAEMTWTPGDLI-----QA 575

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             R  + G + +V +YYL A +TID+ + + +  K      +LN  ++ET+ V
Sbjct: 576 EDRAHRIGQRSSVNIYYLHAPDTIDDFIWETIHRKLGNLGQVLNG-REETMRV 627


>gi|168009588|ref|XP_001757487.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691181|gb|EDQ77544.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 952

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 55  KIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ---------------GRTLDKD 97
           K+K +  +  +  A    +++   +   LA ++    Q                    + 
Sbjct: 755 KLKWVLDLVQLCDAAKEKVLIFSEYLYSLALIENMTMQRMNWSRGSQILRLDGSLPPQER 814

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                ++N + +  +L A   +CG G++L  G + +V   + W+       + R  ++R 
Sbjct: 815 EMVQHKFNTDPEAKMLCASIKACGEGISL-VGASRVVLLEVHWNPS-----VPRQAISRA 868

Query: 157 RQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKSTIQDLLLN 196
            + G +R V VY LIA +T +   +      K  +  LL +
Sbjct: 869 FRIGQQRKVVVYRLIAADTYEATNMHAVATRKEWLSRLLFD 909


>gi|195342588|ref|XP_002037882.1| GM18506 [Drosophila sechellia]
 gi|194132732|gb|EDW54300.1| GM18506 [Drosophila sechellia]
          Length = 592

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           +E       E   A   AS+ +     A              +     +  + II   + 
Sbjct: 324 KETLDAFNKELKTAKGRASEEILLRFYAR-TAEVKTRAVCAYLKTIVKEQKKFIIFAHHR 382

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQY 127
             +     F S L             D    ++  + +     +      +C  G+ L  
Sbjct: 383 VMMDAISDFLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKSSCKVALLSLKACNSGITLTA 442

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              I+VF  L W+             +R  + G  + V   YL+A NT D+++   L+ K
Sbjct: 443 -AEIIVFAELDWNPSTL-----AQAESRAHRIGQTKPVICRYLMAHNTADDIIWNMLKNK 496

Query: 188 STIQDLL 194
             +   +
Sbjct: 497 QEVLSKV 503


>gi|157113183|ref|XP_001651931.1| helicase [Aedes aegypti]
 gi|108877866|gb|EAT42091.1| helicase [Aedes aegypti]
          Length = 740

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 53  DEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPC 99
             KI  L  ++++         ++   ++S L  +       R                 
Sbjct: 568 SSKIARLLELLDEKILCGDDKAVIVSQWSSVLDIVAHHLSSKRVKYVSLTGKVAVKFRND 627

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            + E+N+      ++     + G GLNL  G N L+   L W+ +      E     R  
Sbjct: 628 IVTEFNKQGSGPKVMLLSLTAGGVGLNL-VGANHLLLLDLHWNPQL-----EAQAQDRVY 681

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G K+ VFV+  +   T+++ +      K  I + +L   K++ 
Sbjct: 682 RVGQKKTVFVWKFMCVETVEQAIRGLQEKKIGIANEVLTGTKQKG 726



 Score = 38.2 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 4/45 (8%), Positives = 13/45 (28%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            E ++ F      ++  Q+        +     + + +     E 
Sbjct: 456 NEEVKQFQILVLLLRLRQICCHPGLIHQMLEDDDGNFDMSTVEEE 500


>gi|3702343|gb|AAC62900.1| putative SNF2 subfamily transcriptional activator [Arabidopsis
           thaliana]
          Length = 1245

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 60/229 (26%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
           ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 331 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 390

Query: 83  RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
            L++     R + +              I ++N+      +      + G GLNLQ   +
Sbjct: 391 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-AD 449

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQ--------------- 173
            +V +    + +      E   V R  + G  R V V Y+  + +               
Sbjct: 450 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGG 504

Query: 174 ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                           +I+ L+     + K  + D ++NA +  + T H
Sbjct: 505 SVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 553


>gi|256389644|ref|YP_003111208.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
 gi|256355870|gb|ACU69367.1| SNF2-related protein [Catenulispora acidiphila DSM 44928]
          Length = 727

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQ 102
             K++ L  I+++A  N+  ++V  +F   L         R                 + 
Sbjct: 541 SAKLRRLVEIVDEAEANSRKVVVFSYFRDVLDTVCRALGDRASGPLTGSMQPQHRQELVD 600

Query: 103 EWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +   K   +L +   + G GLN+Q   ++++               E   + R  + G 
Sbjct: 601 AFTAAKKHAVLVSQIQAGGVGLNMQA-ASVVILCEPQVKPTL-----ETQAIARAHRMGQ 654

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R V V+ L+  +++D+ +L+ L  KS + D 
Sbjct: 655 IRRVQVHRLLVADSVDQRMLEILDAKSGLFDA 686


>gi|189199576|ref|XP_001936125.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983224|gb|EDU48712.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 553

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 16/152 (10%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCT 100
           + + + +++    + + +   I+   + + L                     +  K    
Sbjct: 371 LDNVRNQSIRDKWQVSFSTNCIIFSFWKTTLDITASLFDKYSISCFRIHGTLSASKRSRI 430

Query: 101 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++ E     +L     +   G N     NI+      W+       +E   + R  + 
Sbjct: 431 LTDFEESSTTRVLLITLGTGAVGSNKLKAANIIHIVEPQWNPS-----VENQAIGRVIRL 485

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           G +RAV +   I ++TI+E V  R   K  + 
Sbjct: 486 GQERAVTIIRYIMKDTIEEAVQSRQLRKLQLA 517


>gi|224126629|ref|XP_002329602.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222870311|gb|EEF07442.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 148

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 94  LDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +   T++E+NE +   +L     + G GLNL    + +     WW+    +Q I RI 
Sbjct: 35  QKQRERTLKEFNETREKMVLLMSLKAGGVGLNLTA-ASNVFLMDPWWNPAVEEQAIMRI- 92

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                + G KR VFV   I ++T++E + Q    K  +    L   +  +  +
Sbjct: 93  ----HRIGQKRTVFVRRFIVESTVEERLQQVQAKKQRMIAGALTDEEVRSARI 141


>gi|14334972|gb|AAK59663.1| putative chromatin remodelling complex ATPase chain ISWI
           [Arabidopsis thaliana]
          Length = 538

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFS 136
                           D+   +I+ +N+      +      + G G+NL    ++++ + 
Sbjct: 1   MYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINL-ATADVVILYD 59

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             W+ +     ++     R  + G K+ V V+    +N I+  V++R   K  +  L++ 
Sbjct: 60  SDWNPQ-----VDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 114

Query: 197 ALK 199
             +
Sbjct: 115 QGR 117


>gi|218511830|sp|Q6BIP2|RAD5_DEBHA RecName: Full=DNA repair protein RAD5
          Length = 1190

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 23/172 (13%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-------------K 86
            +Y  +           I  L+++ E++    ++V   F+S L  ++              
Sbjct: 1003 LYLYDPTKTSSKIQCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVY 1062

Query: 87   AFPQGRTLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             F     +++    ++ +    +E K+ +L     + G GLNL    +       WW   
Sbjct: 1063 KFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTT-ASRAFMMDPWWSPS 1121

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 +E   + R  + G    V V   I  ++I+  +L+    K  I + +
Sbjct: 1122 -----VEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKIQERKKQIGEAV 1168


>gi|183222781|ref|YP_001840777.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912812|ref|YP_001964367.1| DNA/RNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777488|gb|ABZ95789.1| DNA/RNA helicase Superfamily II [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781203|gb|ABZ99501.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 948

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 79/203 (38%), Gaps = 29/203 (14%)

Query: 8   QRELYCDLQGENIEAFN----SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
             +   +L+ E + +F           +          +  ++  ++   +K++     +
Sbjct: 425 VEDFITELEDEEMSSFQRIKRELFTLNRL--------IHLGKQIKEDKKTQKLRETLYRL 476

Query: 64  EKANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           +K      I+   F +    LQ           F    ++D+    IQ++ E     +  
Sbjct: 477 KKEGHKKFIIFTQFRTTQDHLQSVLEPDFKVSPFHGSLSMDEKEVAIQKFKEDY--EILI 534

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G NLQ+  NIL  + L W   + +Q I RI      + G K  V+++   +++
Sbjct: 535 CTEAGGEGRNLQF-ANILFNYDLPWSPLKIEQRIGRI-----HRFGQKDNVYIFNFASKD 588

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           T+ E +L+ L  K  + +  + A
Sbjct: 589 TVAERILEVLTNKIRLFEESIGA 611


>gi|255656168|ref|ZP_05401577.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 1013

 Score = 67.5 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y  + +++   ++ +N++       S   K  QL        ++ +       KI+  
Sbjct: 837  KIYSVYSKDIQDKIKDKNLKKDKIVIFSYLTKLRQLCLDPSIVVKDYN---KKSSKIETC 893

Query: 60   EVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
              I+         I++   F S L                        +    + E+N  
Sbjct: 894  LEILRDSINENHKILLFSQFTSVLKNISKELDKYKIKYHYIDGKTNAKERLELVDEFNNS 953

Query: 108  -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +      + G GLNL    ++++ F  WW+       +E     R  + G K+   
Sbjct: 954  IDKKVFLISLKAGGTGLNLTS-ADMVIHFDPWWNPS-----VENQASDRAHRFGTKKFST 1007

Query: 167  VYYL 170
             Y +
Sbjct: 1008 SYKI 1011


>gi|302883508|ref|XP_003040654.1| hypothetical protein NECHADRAFT_79818 [Nectria haematococca mpVI
           77-13-4]
 gi|256721542|gb|EEU34941.1| hypothetical protein NECHADRAFT_79818 [Nectria haematococca mpVI
           77-13-4]
          Length = 895

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 38/159 (23%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGKIPLLFAHPAS 118
             +V  ++   L  +Q AF Q     +                +  N     +L A   S
Sbjct: 716 KSVVFSYWTKMLDLVQIAFRQSGYSYERIDGQSSLRQRHRAMSKFNNNPACTVLLATIGS 775

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G++L    N +      W+      M E   + R  + G +R V     I   +I+E
Sbjct: 776 AGEGIDLTA-ANHVHLMEPHWNP-----MAEEQAIARVHRIGQRRPVIATKYITPRSIEE 829

Query: 179 ---------------------LVLQRLRTKSTIQDLLLN 196
                                 VL+  + K  +    L+
Sbjct: 830 VGYLSTLNNRDFDPANGSINQYVLEMQKEKLALSRKALD 868


>gi|294899102|ref|XP_002776495.1| DNA repair protein RAD5, putative [Perkinsus marinus ATCC 50983]
 gi|239883507|gb|EER08311.1| DNA repair protein RAD5, putative [Perkinsus marinus ATCC 50983]
          Length = 666

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L     + G GLNL   G  L    LWW+       +E   + R  + G +  V +Y 
Sbjct: 545 KVLLVSLRAGGVGLNLTA-GRTLYLLDLWWNPA-----VEEQAMMRVHRLGQQHTVRIYR 598

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + +++ID+ ++     KS + ++  +A     + 
Sbjct: 599 FVVRDSIDQRIMSLQAGKSRLTNMAFDASDAAALQ 633


>gi|301384370|ref|ZP_07232788.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           Max13]
          Length = 222

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 33/200 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ +  ++ + +    +I
Sbjct: 34  EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAELDVDDKVI 78

Query: 73  VAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +   +   +A L++   +                +         +    +     ++ G 
Sbjct: 79  LFCEYQESVATLREHCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGT 138

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 139 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAEDTIDQQLW 192

Query: 182 QRLRTKSTIQDLLLNALKKE 201
           Q L  K  +   L++   +E
Sbjct: 193 QMLMDKRALASDLIDPEAEE 212


>gi|154303593|ref|XP_001552203.1| hypothetical protein BC1G_08681 [Botryotinia fuckeliana B05.10]
 gi|150854475|gb|EDN29667.1| hypothetical protein BC1G_08681 [Botryotinia fuckeliana B05.10]
          Length = 274

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDP 98
             K +AL  I++  +      +++   + S L  +QK   Q                +D 
Sbjct: 100 SSKTEALMQIVKVTHNDPLSKVVIFSQWTSFLNIVQKQLEQAGIKFARIDGSMTAPQRDK 159

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 ++ +  +L A  A C  GLNL    + ++    WW        IE   V R  +
Sbjct: 160 GMNSLESDPECRILLASLAVCSVGLNLVA-ADTVILADSWWAPA-----IEDQAVDRVHR 213

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G KR   V+ L+ + +I+E VL+    K  +       
Sbjct: 214 LGQKRECKVWRLVMEGSIEERVLEIQGEKRKLVGRAFQE 252


>gi|218200089|gb|EEC82516.1| hypothetical protein OsI_27014 [Oryza sativa Indica Group]
          Length = 700

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI A+   +          ++  H  S L  + +              Q     +    
Sbjct: 505 AKIPAVLDYLGTIIEAECKFLIFAHHQSMLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLV 564

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
               N+  I        + G GL L    + ++F  L W   +           R  + G
Sbjct: 565 TDFQNKDDIKAAVLSIKAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIG 618

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +V +YYL+A +T+D+++   ++ K      +L+  +K
Sbjct: 619 QVSSVNIYYLLANDTVDDIIWDVVQGKLENLGQMLDGQEK 658


>gi|167539902|ref|XP_001741408.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894110|gb|EDR22194.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 956

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           +   EL     G+ +E F    + V+   +   A     +     +    I+  ++++  
Sbjct: 369 RLAAELQKKKLGDKVEKFTKQIQFVELYNMTCTAKL---KGVCSFLDKMIIEGKKLLVFG 425

Query: 66  ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124
            +   +    ++  +                    +  +  E +I +      + G G+ 
Sbjct: 426 HHQEMLDGIENYIKESNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAAGTGIT 485

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + +VF  L+W          R    R  + G K  V ++YLI + T+D+L+   L
Sbjct: 486 LHS-ADTVVFAELYWTPGVL-----RQAEDRVHRIGQKNDVRIFYLIGKQTVDDLIWPLL 539

Query: 185 RTKSTIQDLLLNA 197
             K  I    L+ 
Sbjct: 540 EKKLKISGETLDG 552


>gi|2281697|gb|AAB64175.1| transcription factor [Mus musculus]
          Length = 1002

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 16/160 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ 102
           +  + AL  +  K      +V   F + L+ ++                    K   +IQ
Sbjct: 830 NALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQ 889

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGG-NILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +   +             G+ L     + +      W+     Q  +R       + G 
Sbjct: 890 RFQNTEAGSPTISTVLKAGGVGLNLCARSRVFLMDPAWNPAAEDQCFDRC-----HRLGQ 944

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           K+ V +   I +++++E +L+   TK  +        K +
Sbjct: 945 KQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFATKKTD 984



 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 18/80 (22%), Gaps = 7/80 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   + E    +        + A   +     ++  Q+                    
Sbjct: 670 KIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT-NGMSSSGPSRS 728

Query: 56  IKALEVIIEKANAAPIIVAY 75
               E+         II++ 
Sbjct: 729 DTPEELRKMLIEKMKIILSS 748


>gi|145207323|gb|AAH78216.2| Zranb3 protein [Danio rerio]
          Length = 541

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEW- 104
           +K    ++ ++     +V  H  S L                        +    +  + 
Sbjct: 323 VKDYIKMMLESEQLKFLVFAHHLSMLQACTEAVIEAKAGYIRIDGSVPSAERIQLVHRFQ 382

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+    +      + G GL      + +VF  L+W+         +    R  + G    
Sbjct: 383 NDPDTRVAVLSIQAAGQGLTFTA-ASHVVFAELYWNPGHI-----KQAEDRAHRIGQTAT 436

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V ++YLIA+ T D ++   L  K T+    LN  K+
Sbjct: 437 VHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKKE 472


>gi|326426540|gb|EGD72110.1| hypothetical protein PTSG_11548 [Salpingoeca sp. ATCC 50818]
          Length = 930

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 31/224 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLA-----------NGA--VYYDEEKHWKEV 51
            + ++++   L  +  +         K  +L            +      ++  +  + +
Sbjct: 214 RRLKKDVLSQLPPKRRQRVTVEVTNKKLCKLLEAGFNELKRLDSDPNTQQFESHRLLQSL 273

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTI 101
             +   A             +V  +  + L                      + +    +
Sbjct: 274 FHDTSTAKMDSGMCDAGGKFLVFAYHLNMLKALEEAVASQGVEYIMIVGETPVHERHDMV 333

Query: 102 QEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +++       +      +   G+ L    + +VF  L W        I      R  + G
Sbjct: 334 KKFQASNRCRVAILSLLAASQGITLTA-ASTVVFAELHWTPG-----IIEQAEDRAHRIG 387

Query: 161 FKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                V ++YL+A NT+D+++   L  K  +    LN  +   +
Sbjct: 388 QTDTSVNIHYLVAPNTLDDILWSTLSRKVGVVSTTLNGERSRLV 431


>gi|295836817|ref|ZP_06823750.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295826220|gb|EDY44436.2| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 546

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 68  AAPIIVAYHFNS-------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               ++   F          LA+   A   G T D++    +   +    +L ++PA+ G
Sbjct: 373 GKKTLIWTTFVRSLTTLERLLAKFGPASVYGGTPDREEQLRRFREDPSCMVLISNPATLG 432

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G++L    +  V+    +      Q ++RI        G + +V V  L A+ T+DE+V
Sbjct: 433 EGISLHQSVHDAVYVDRDFMAGRFLQSLDRIHRLGLA-PGTETSVTV--LAARGTVDEVV 489

Query: 181 LQRLRTKSTIQDLLLNA 197
             RL  K      +L+ 
Sbjct: 490 AARLDRKLEFMGAILDD 506


>gi|224000229|ref|XP_002289787.1| hypothetical protein THAPSDRAFT_268687 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974995|gb|EED93324.1| hypothetical protein THAPSDRAFT_268687 [Thalassiosira pseudonana
           CCMP1335]
          Length = 446

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 10/176 (5%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +   K  Q+++      +          K +   VI          V      D    
Sbjct: 254 ILAPFNKLRQVSS--FAKMDATVALADSILKEEESIVIFSSFVDVAKGVQRC-LQDRGWN 310

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            +         K    I ++  G  P+      + G GL L      ++     W   + 
Sbjct: 311 GELLTGEVPSSKRQAMIDDFQSGVSPVFVCTYGAGGVGLTLTAACT-VILIDRPWTPGDV 369

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                     R R+ G  R V   ++ A   IDE +   L  K       ++ +K 
Sbjct: 370 -----NQAEDRVRRIGQTRPVRSIWIQA-FPIDEQIDALLDHKEVNSVTAVDGIKG 419


>gi|83771803|dbj|BAE61933.1| unnamed protein product [Aspergillus oryzae]
          Length = 939

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFN-SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              + DE I+A + I+  +++ P +           R          +       + +N 
Sbjct: 689 MNSIIDESIRAGDKILVFSHSIPTLDYIEHVLRSSNRKYSRLDGRTPVVTRQDATKRFNL 748

Query: 107 G-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           G +  +      + G GLN+    N ++ F   +       + E   V R  + G ++ V
Sbjct: 749 GSEKQVYLISTRAGGLGLNI-PVANRVIIFDFKFSP-----VWEEQAVGRAYRLGQQKPV 802

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           FVY  IA  T +E++  +   K+ +   +++
Sbjct: 803 FVYRFIAGGTFEEVMYNKAVFKTQLAFRVVD 833


>gi|290466810|gb|ADD25740.1| putative helicase [Lactococcus phage 1358]
          Length = 577

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 41/212 (19%)

Query: 19  NIEAFNSASKTVKCLQLANGAVY-------------------YDEEKHWKEVHDEKIKAL 59
            I   +  S      QLA+GA+Y                   + + +   EVHD K+ AL
Sbjct: 331 KITTEHIFSVINALRQLASGAIYEQLDTTGLDEEEIAERYNEHMKNRKHIEVHDAKLDAL 390

Query: 60  EVIIEKANAAPI-IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             IIE+        V+Y   ++  R +    +          +  WN GKIP+L A+PAS
Sbjct: 391 ADIIEREQDNVFVFVSYKHEAERIRQRFEGVRFLNTANAAEVLPLWNAGKIPVLVANPAS 450

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------ 172
              GLN+Q GG+ +V++S+ +  E   Q   R+      + G K  V VY L +      
Sbjct: 451 TKFGLNMQDGGHTIVWYSMGYSFEAFTQSNARLA-----RQGQKHEVKVYMLQSWLAPIQ 505

Query: 173 ----------QNTIDELVLQRLRTKSTIQDLL 194
                       TID  ++  +  K  + D +
Sbjct: 506 DDTQLEDIMRAQTIDSAIMDAIDEKRELNDGV 537


>gi|295674753|ref|XP_002797922.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280572|gb|EEH36138.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1797

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +     + + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1381 RTYSRLDGKTPIATRQISTKNFNSGSYTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1439

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   E   V R  + G ++ VFVY  +A  T ++++  +   K+ +   +++ + 
Sbjct: 1440 T-----WEEQAVGRAYRLGQRKPVFVYRFLAGGTFEDIMHNKAVFKTQLSYRVIDKMN 1492


>gi|170070634|ref|XP_001869654.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167866544|gb|EDS29927.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 104

 Score = 67.5 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++     + G GLNL  G N L+   L W+ +      E     R  + G K+ V+++ 
Sbjct: 4   KIMLLSLTAGGVGLNL-VGANHLMLLDLHWNPQL-----EAQAQDRVYRVGQKKPVYIWK 57

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +  +T+++ ++   + K  +    L   K
Sbjct: 58  FMCTDTVEQKIMGLQQKKLDLATQALTGTK 87


>gi|296815474|ref|XP_002848074.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238841099|gb|EEQ30761.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1049

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIP 110
             ++ +    I +   F   ++ L                      +     +   E KI 
Sbjct: 862  WLQDSPGTKITIFTQFIGMMSILCSLCETEGWGYTTLSGKLSHATRHANIKRFREEEKIN 921

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L +   + G GL+L       +   LWW+     + IE+    R  + G K+ V +  +
Sbjct: 922  ILISSLKAGGVGLDLT-MATKCILLDLWWN-----EAIEQQAFCRLFRIGQKKDVEIIRI 975

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
               NT+D+ +     TKS   + ++ +
Sbjct: 976  CVDNTVDDRIQLLQSTKSAHIEEVMGS 1002


>gi|302680130|ref|XP_003029747.1| hypothetical protein SCHCODRAFT_58967 [Schizophyllum commune H4-8]
 gi|300103437|gb|EFI94844.1| hypothetical protein SCHCODRAFT_58967 [Schizophyllum commune H4-8]
          Length = 939

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 36/156 (23%)

Query: 52  HDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCT 100
              KI  L  +++    A   +V   F S L ++                     +    
Sbjct: 792 SSAKIDQLVKLLQLNPPADKSLVFSQFTSFLDKVSCQRWMRCIPYVRFDGQMSGKRREEA 851

Query: 101 IQEWNEG----------------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           I+ ++                     ++     +   GLNL    N+ ++          
Sbjct: 852 IRRFSVPIKPTDTAASNWLPGGVNPKVMLISLKAGALGLNLTVANNVYLW---------W 902

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           Q+ IE   + R  + G  + V VY +IA++T++  V
Sbjct: 903 QEGIESQAIDRVNRIGQTKPVHVYQMIAEDTVESKV 938


>gi|225684822|gb|EEH23106.1| DNA repair protein RAD5 [Paracoccidioides brasiliensis Pb03]
          Length = 936

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 26/216 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y    R+ +   Q   + +  +  +  K  Q      Y       K +    +  +E   
Sbjct: 720 YSAITRQGFEKFQAYQLSSRQNPKQAKKFGQ------YEGPHTKTKALISHLLDTIEESK 773

Query: 64  EKANA--APIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEG-KI 109
           +         IV   + S L  +Q A                +L +    +  + +   +
Sbjct: 774 KSPEKAPIKSIVFSSWTSHLDLIQIAMEDNGITSFTRLDGTMSLKQRNAALDAFRDDDNV 833

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   + G GLNL   G+        ++     Q ++R+      + G  R V    
Sbjct: 834 TILLATLGAGGVGLNLTS-GSRAYIMEPQYNPAAIAQAVDRV-----HRLGQTREVTTIQ 887

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I +++I+E + +  R K  + D+ LN  + +   +
Sbjct: 888 FIMKDSIEEKIAELARKKQQMADMSLNRGRLDRREL 923


>gi|229821239|ref|YP_002882765.1| helicase [Beutenbergia cavernae DSM 12333]
 gi|229567152|gb|ACQ81003.1| helicase domain protein [Beutenbergia cavernae DSM 12333]
          Length = 672

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F     R      +  T  ++        + ++ ++     + G G+NLQ   ++++   
Sbjct: 522 FARRGLRYASIRGEQTTAVRERNVTAFLEDPEVAVVVCSLTAAGVGINLQVASDLVLAEL 581

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            W D E+         + R  + G  + V  + +IA  TID  + + +  K+ +    L+
Sbjct: 582 SWTDAEQT------QAIDRVHRIGQSQPVTAWRIIAAQTIDARIAELIDAKAGLAARALD 635

Query: 197 A 197
            
Sbjct: 636 G 636


>gi|294876194|ref|XP_002767598.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239869258|gb|EER00316.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 511

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L     + G GLNL   G  L    LWW+       +E   + R  + G +  V +Y 
Sbjct: 390 KVLLVSLRAGGVGLNLTA-GRTLYLLDLWWNPA-----VEEQAMMRVHRLGQQHTVRIYR 443

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + +++ID+ ++     KS + ++  +A     + 
Sbjct: 444 FVVRDSIDQRIMSLQAGKSRLTNMAFDASDAAALQ 478


>gi|34533780|dbj|BAC86802.1| unnamed protein product [Homo sapiens]
          Length = 1225

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 47/190 (24%), Gaps = 34/190 (17%)

Query: 2    KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYD-------------EEKH 47
            K Y       +  L         +  +  +   +  N    +               +  
Sbjct: 958  KYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGS 1017

Query: 48   WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-------- 97
                   K+  L+ +++K       +++       L  L+          +         
Sbjct: 1018 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1077

Query: 98   --PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I  +N              + G G+NL    + ++ +   W+        +    
Sbjct: 1078 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINL-ATADTVIIYDSDWNP-----HNDIQAF 1131

Query: 154  TRQRQAGFKR 163
            +R  + G  +
Sbjct: 1132 SRAHRIGQTK 1141


>gi|238594429|ref|XP_002393482.1| hypothetical protein MPER_06777 [Moniliophthora perniciosa FA553]
 gi|215461019|gb|EEB94412.1| hypothetical protein MPER_06777 [Moniliophthora perniciosa FA553]
          Length = 207

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 25/162 (15%)

Query: 46  KHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQK----------AFPQGRT 93
                    K+  L   I   +      I    + S L  ++K           F     
Sbjct: 39  GDDDLEPSTKMLKLIDYISKWETIGDKTICYSQWTSMLDLIEKLFSRYGIRSVRFDGKMD 98

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                  +  +       ++       G GLNL    N ++   + W+        E   
Sbjct: 99  RTSREQALSTFKSPTGPKVILISTKCGGVGLNLVA-ANRVINMDVSWNFAA-----ESQA 152

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVL------QRLRTKS 188
             R  + G ++ V++  L+  NTI+E +L      + +  K 
Sbjct: 153 YDRAHRIGQEKNVYIKRLVVANTIEERMLSTSGSPKLVSRKL 194


>gi|312599275|gb|ADQ91298.1| hypothetical protein BpV2_131 [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 478

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 79/221 (35%), Gaps = 29/221 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD--------EEKHWKEVHDEKI 56
            +  ++++      N+         ++  Q       Y         E   + E   +K+
Sbjct: 243 QEMIKDIFRTAVNVNMHNMEIFECLLRARQSMIYPQMYINGIAKKRGEIPEFWEGRSKKM 302

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWN-EGK 108
           + L  +I +      +V   F  ++  + +             + +     ++ +N   +
Sbjct: 303 ETLFKLISEHPDEKTLVFCQFKQEMDYIHENLSCPVFRIDGSVSKEDREKQLKLFNEAPQ 362

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L     + G GLN+Q   + + F +  W+            + R  ++G KR V+V 
Sbjct: 363 NSVLLIQVKAGGQGLNIQ-CASRIYFTAPCWNPATEL-----QAIGRAHRSGQKRTVYVK 416

Query: 169 YLIAQNT-----IDELVLQRLRTKSTIQDLLL--NALKKET 202
            L+  +T     +++ ++     KS +   +L  + LK + 
Sbjct: 417 KLVYGDTPGYPSVEQAMIALQGHKSLLSAEVLRDDRLKTQI 457


>gi|242023012|ref|XP_002431930.1| helicase, putative [Pediculus humanus corporis]
 gi|212517281|gb|EEB19192.1| helicase, putative [Pediculus humanus corporis]
          Length = 882

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 97  DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            P  I ++N  K  I ++       G       GGN LV     W+ +   Q  +RI   
Sbjct: 763 RPKIIDDFNNPKTGIKVMLLSLT-AGGVGLNLVGGNRLVIIEPHWNPQLESQACDRI--- 818

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              + G K+ V+VY +I Q TI+E +    + K  + + +L
Sbjct: 819 --YRVGQKKPVYVYKIICQETIEERIELLQKKKLEVAETVL 857


>gi|149637050|ref|XP_001510449.1| PREDICTED: similar to zinc finger, RAN-binding domain containing 3
           [Ornithorhynchus anatinus]
          Length = 1115

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 29/209 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K  R         + +   +     +              K         +K    ++ 
Sbjct: 315 EKLMRASASGTTENSGDFSRAMGLITRL------------FKETTLAKAGAVKDYIKLML 362

Query: 65  KANAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
           +  +   +V  H  S L            R  +      + ++     Q   +    +  
Sbjct: 363 QNESLKFLVFAHHLSMLQACTEAAVENKVRYIRIDGSVPSSERMHLVQQFQKDPDTRMAV 422

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GL        +VF  L+WD         +    R  + G   +V ++YLIA 
Sbjct: 423 LSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRIGQCSSVNIHYLIAN 476

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
            T+D ++   L  K+ I    LN  K+  
Sbjct: 477 GTLDSVMWGMLNRKAGITGSTLNGRKERL 505


>gi|288553361|ref|YP_003425296.1| Snf2/Rad54 family helicase [Bacillus pseudofirmus OF4]
 gi|288544521|gb|ADC48404.1| Snf2/Rad54 family helicase [Bacillus pseudofirmus OF4]
          Length = 560

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 14/196 (7%)

Query: 9   RELYCDLQGENIEAFNS----ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
           RE         IE          +  K L +  G       K  K +   K    +VII 
Sbjct: 315 REAAFMTLKNMIEKAQKDGRTLPQAEKLLHMIGG--IDGHAKAEKALELVKKINDKVIIF 372

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
               A  +    +          F  G    K     Q +      +L A   + G G+N
Sbjct: 373 TEYRATQLYLQWYLKQNGISSVPFRGGFKRGKKDWMRQLFES-HAQVLIAT-EAGGEGIN 430

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ+  + ++ F L W+    +Q I RI      + G K  V +Y    ++T+++ +L+ L
Sbjct: 431 LQF-CSHIINFDLPWNPMRIEQRIGRI-----HRLGQKNDVHIYNFAVEDTVEQHILKLL 484

Query: 185 RTKSTIQDLLLNALKK 200
             K  + + ++  L +
Sbjct: 485 YEKIHLFESVIGELDE 500


>gi|224110292|ref|XP_002315473.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222864513|gb|EEF01644.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 670

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 19/160 (11%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI  +   +          ++  H  S +  + +              +     +    
Sbjct: 475 AKISGVLDYLGTVIEAGCKFLIFAHHQSMIDSIHEFLLKKKVGCIRIDGKTAAASRQALV 534

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                +  I        + G GL L    + ++F  L W   +           R  + G
Sbjct: 535 TDFQEKDAIKAAVLSIRAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIG 588

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +V +YYL+A +T+D+++   +++K      +L+  +K
Sbjct: 589 QVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGQEK 628


>gi|193084404|gb|ACF10057.1| SNF2-related protein [uncultured marine crenarchaeote
           SAT1000-21-C11]
          Length = 569

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
           H      + I  +E  +        I      S       A   G+T       I  +  
Sbjct: 400 HHVIDFVKNIMEIEESVVVFCHHKSIHKLLHESLQEFNPAAIIGGQTDKVRQENIDNFQN 459

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   L+     +   G+NL      ++F  L W        I R    R  + G K  VF
Sbjct: 460 GGTKLIVVGLRAGNLGINLTR-AKYVIFAELDWSPA-----IHRQAEDRLHRIGQKNTVF 513

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YYLI + T+DE V   L  KS   D +++ 
Sbjct: 514 AYYLIGKRTLDEHVANILVDKSYEIDAIMDE 544


>gi|156089377|ref|XP_001612095.1| helicase  [Babesia bovis T2Bo]
 gi|154799349|gb|EDO08527.1| helicase conserved C-terminal domain containing protein [Babesia
           bovis]
          Length = 879

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 14/150 (9%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKDPCTIQEWNEG 107
             +  +I+ +    I   + F  D              +         ++    +  N  
Sbjct: 705 DYVLHLIKSSVKFIIFAHHMFMMDAIEQVLKAQHCCYMRIDGSTNAQQRESRVTEFQNNS 764

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K  +      +CG GLNL    + +VF  L W   +  Q  +R            R + +
Sbjct: 765 KCRVALLSLTACGVGLNLTS-SSTVVFAELHWVPGQMIQAEDRAHR----MGTKHRIINI 819

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +YLIA+ +I+E + + +  K       LN 
Sbjct: 820 HYLIAEGSIEETMWRVVSRKWETVTATLNG 849


>gi|66821527|ref|XP_644229.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60472422|gb|EAL70375.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1400

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +     +  N     +      + G GL L    N++VF  L+W          R    
Sbjct: 1056 QRQAFVTKFQNNASCKVALLSITAAGTGLTLTA-SNLVVFVELYWTPGVL-----RQAED 1109

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            R  + G  +  +++YLI +NT+D+ +   +  K  +    L+  ++E +H
Sbjct: 1110 RIHRIGQTKTCYIHYLIGKNTLDDRIWPTICNKLEVLGETLDG-QEEVLH 1158


>gi|297243714|ref|ZP_06927645.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
 gi|296888465|gb|EFH27206.1| superfamily II DNA/RNA helicase, SNF2 family [Gardnerella vaginalis
           AMD]
          Length = 735

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR--------TLDKDP 98
             +     K+    V   +     +++   +   L ++  AF            + +K  
Sbjct: 530 DMRNSSKAKLLKEIVEEAELEERKVLIFSFYLDTLHKVVDAFSNKCIGLINGSVSPEKRI 589

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+E+ N     +L +   S G GLN+Q   +++V               E   ++R  
Sbjct: 590 KIIEEFDNAPAGSVLVSQIMSGGTGLNIQS-ASVVVICEPQLKPST-----ENQAISRAY 643

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIHV 205
           + G  R V VY+L+A+ TIDE + + L  K  I +   + ++  + + +
Sbjct: 644 RMGQSRDVIVYHLLAEKTIDEGITKVLENKQEIFNRFADESVAAQKVEI 692


>gi|255541636|ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis]
 gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis]
          Length = 2248

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 58/222 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1305 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1364

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N       +      + G GLNLQ   +
Sbjct: 1365 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQS-AD 1423

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----------------- 173
             ++ +    + +      E   V R  + G KR V V Y+ A                  
Sbjct: 1424 TVIIYDPDPNPKN-----EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGG 1478

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                            +I+ L+     + K  + D ++NA +
Sbjct: 1479 TIDLEDDLAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGR 1520


>gi|317128397|ref|YP_004094679.1| helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473345|gb|ADU29948.1| helicase domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 542

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F +        F  G    K     Q + + +  +L A   + G 
Sbjct: 372 IIFTEYRATQLYLQWFLAQNGIKSVPFRGGFKRSKKDWMKQLFKD-QAQVLIAT-EAGGE 429

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  + ++ + L W+    +Q I RI      + G ++ V +Y    ++T+++ +L
Sbjct: 430 GINLQF-CHRMINYDLPWNPMRIEQRIGRI-----HRLGQEKDVEIYNFAVKDTVEDHIL 483

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K  + + ++  L
Sbjct: 484 KLLYKKIGLFEGVIGKL 500


>gi|307105038|gb|EFN53289.1| hypothetical protein CHLNCDRAFT_136932 [Chlorella variabilis]
          Length = 1383

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 45   EKHWKEVHDEKIKALEVIIE-KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------ 97
             K+     D K++ +  ++  K  +  ++V   + + L  +++  P+     +D      
Sbjct: 1011 YKNVTYTFDSKVEKVLDVLRGKGASEKVVVFSEYKALLQAVKRRLPELGLDSRDLLTNAK 1070

Query: 98   ------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                               + F    + G G+ L  G + +V      +        E  
Sbjct: 1071 SVEKRGQAIADFQQAPPTQVFFLTHRTGGAGVTLTAGTH-VVLCEPVLNPA-----FEEQ 1124

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             + R  + G +RAV V  LI + TI+E +++
Sbjct: 1125 AIGRCNRLGQQRAVTVTRLIMKGTIEEKIVE 1155


>gi|56964261|ref|YP_175992.1| DNA/RNA helicase [Bacillus clausii KSM-K16]
 gi|56910504|dbj|BAD65031.1| SNF2 family DNA/RNA helicase [Bacillus clausii KSM-K16]
          Length = 559

 Score = 67.1 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + ++E      G  +E  N A+         +G    ++     +  D+K+     II
Sbjct: 329 YEQEEKET-----GAIVELLNEATAV-------DGHAKAEKALELIQKIDDKV-----II 371

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
                A  +    F          F  G    K     + + +    +L A   + G G+
Sbjct: 372 FTEYRATQLYLQWFLKQHGITSVPFRGGFKRGKKDWMRELFQK-HAQVLIAT-EAGGEGI 429

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ+  + ++ + L W+    +Q I R+      + G +  V +Y    Q+T+++ +L+ 
Sbjct: 430 NLQF-CHHIINYDLPWNPMRVEQRIGRL-----HRLGQEHDVRIYNFAVQHTVEQHILEL 483

Query: 184 LRTKSTIQDLLLNAL 198
           L  K  + + ++  L
Sbjct: 484 LYEKIHLFESVIGEL 498


>gi|242066540|ref|XP_002454559.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
 gi|241934390|gb|EES07535.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
          Length = 1484

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 97   DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                ++ +N+ K    ++ A   +C  G+ L  G + +V   + W+       + R  + 
Sbjct: 1250 RQTMMEVFNDMKSKAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIG 1303

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R  + G ++ V+ Y LIAQ T ++        K  +  LL +
Sbjct: 1304 RAYRIGQEKIVYTYNLIAQGTREKSKYDTQAKKEHMSKLLFS 1345


>gi|300727020|ref|ZP_07060439.1| SNF2 N-terminal domain protein [Prevotella bryantii B14]
 gi|299775564|gb|EFI72155.1| SNF2 N-terminal domain protein [Prevotella bryantii B14]
          Length = 654

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 59/252 (23%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYD---------------- 43
           + Y   +     +++    +  +    +K ++  Q+A   +                   
Sbjct: 373 RIYEFIEERFVEEVENRESDIHSVLVRAKAIRLQQVATNPILLRAPLSQFTEEAGVDFST 432

Query: 44  -EEKHWKEVHDEKIKALEVIIEKAN------------AAPIIVAYHFNSDLARLQKAFPQ 90
            E++    + D      + I  K                 ++V   F   +   Q     
Sbjct: 433 VEQEDSMIMSDVMRYYEDEIPAKYEVCAQLINDIIKDGGKVVVWAIFIKTIETFQSYLDS 492

Query: 91  GRTLDK-----------------------DPCTIQEWNEGKI--PLLFAHPASCGHGLNL 125
                +                           I+E++       ++ A+P +    ++L
Sbjct: 493 IGIKSRALYGATPVATDGMTEDDVNYELTREAIIKEFHNPDSEFKVIIANPFAVAESISL 552

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               +  ++    ++     Q  +RI        G       YYLI+Q+T+D  +  RL 
Sbjct: 553 HKACHNAIYLERSFNCAHFVQSKDRIHRYG---LGPDVVTNYYYLISQDTVDCTINDRLH 609

Query: 186 TKSTIQDLLLNA 197
            K      ++ +
Sbjct: 610 EKEARMIAIIES 621


>gi|253744877|gb|EET01014.1| Transcription regulatory protein SNF2 [Giardia intestinalis ATCC
            50581]
          Length = 2074

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 53   DEKIKALEVIIEKANA--APIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
              K++ L+ I+ K +     +++   F                    F            
Sbjct: 1101 SGKLELLDNILAKLHKTSHRVLIFSQFKKVLDVLSSYLHYRQYKFVRFDGSVKDVDRNTM 1160

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            I+ +N+      +      +  HGLNLQ   + ++ F   ++        ++    R  +
Sbjct: 1161 IRGYNKEDSKDFIFLLSTRAASHGLNLQT-ADTVIIFDCDYN-----GTYDQQAQDRCYR 1214

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             G    V V+ L +   I+  +L    +K ++  ++++A
Sbjct: 1215 LGQVNPVKVFKLYSNTAIESKMLSVATSKLSLATIVMDA 1253


>gi|255556614|ref|XP_002519341.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
           communis]
 gi|223541656|gb|EEF43205.1| Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus
           communis]
          Length = 674

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 75/218 (34%), Gaps = 36/218 (16%)

Query: 8   QRELYCDLQGENIEAFNSASKTV-----KCLQLANGAVYYDEEKHWKEVH---------- 52
           +++++ DL  ++++  N+  + +     K    A  +    E   + E +          
Sbjct: 419 RQQVFLDLAEKDMKKINALFRELEVVKGKIK--ACSSAEEVESLKFSEKNIINKIYTDSA 476

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPC 99
           + KI  +   +          ++  H    +  + +              +   + +   
Sbjct: 477 EAKIPGVLDYLATVIEAGCKFLIFAHHQPMIDSIHEFLVKKKVGCIRIDGRTPPVSRQSL 536

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +  I        + G GL L    + ++F  L W   +           R  + 
Sbjct: 537 VTDFQEKDAIKAAVLSIKAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRI 590

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G   +V +YYL+A +T+D+++   +++K      +L+ 
Sbjct: 591 GQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDG 628


>gi|302839932|ref|XP_002951522.1| hypothetical protein VOLCADRAFT_92108 [Volvox carteri f. nagariensis]
 gi|300263131|gb|EFJ47333.1| hypothetical protein VOLCADRAFT_92108 [Volvox carteri f. nagariensis]
          Length = 2115

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIE 149
            G    +        ++    +L    +  G    L     +         +        E
Sbjct: 1988 GNPAARQAALQSFLHDPTCRVLLLLKSHSGGAAGLSLTVAHTAFMLEPAVNPGL-----E 2042

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G  R   V  +IA++T+++ VL   + K  +
Sbjct: 2043 AQAAARICRLGQDRPTRVIRIIAKHTVEDRVLAMQQYKQQL 2083


>gi|300708724|ref|XP_002996536.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
 gi|239605845|gb|EEQ82865.1| hypothetical protein NCER_100376 [Nosema ceranae BRL01]
          Length = 594

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  +     +  N G + +      +C  GL L     ++VF  L+W+     Q  +RI 
Sbjct: 471 TSHRQRLVNEFQNNGNVRVALLSVTACNTGLTLTA-AKLVVFAELYWNPGTLLQAEDRI- 528

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                + G   +V ++YL+ + T+DE V   L  K  +   L
Sbjct: 529 ----HRIGQSSSVDIHYLVCKGTVDEYVWPILLKKLNVLQSL 566


>gi|317121963|ref|YP_004101966.1| helicase [Thermaerobacter marianensis DSM 12885]
 gi|315591943|gb|ADU51239.1| helicase domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 524

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 36/226 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLAN--GAVY-----------------Y 42
           + Y    R +  +               +   ++ +   A+                   
Sbjct: 247 ELYQAVLRAVREEYAERRPYNSTVLPLLMLQREVCSSSHALRATLDRLAGSEGWQSLAWM 306

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGR 92
              +  ++V +     +   + +    P++V   F +    L +           +    
Sbjct: 307 RVRELARQVEENHKALMLERLVQRLGEPVVVFTEFRATQDYLARRLRRAGVETVVYHGAM 366

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +       + +G   +L       G GLNLQ+    +V + L W+    +Q I RI 
Sbjct: 367 GTGERDAAKARFRQGA-RVLI-STECGGQGLNLQF-CRNVVNYDLPWNPMRVEQRIGRIH 423

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              Q  A     V V+ L A+ TI+E +L+ L  K  +   ++  +
Sbjct: 424 RLGQEAAS----VRVFNLYARRTIEEYILRLLDEKINLFRQVIGEI 465


>gi|242209777|ref|XP_002470734.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730204|gb|EED84065.1| predicted protein [Postia placenta Mad-698-R]
          Length = 998

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+ P   +   +  + +      + G GLNL  G N +V F             +   +
Sbjct: 670 QDRMPLIDKFHEDPDVFVFLISTMAGGTGLNLT-GANKVVIFD---------PAHDLQAI 719

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            R  + G  R V V+ L+   +I+EL+  R   K     
Sbjct: 720 DRAYRFGQTRDVSVFRLLGAGSIEELIYARQVYKQQQMQ 758


>gi|217968742|ref|YP_002353976.1| helicase [Thauera sp. MZ1T]
 gi|217506069|gb|ACK53080.1| helicase domain protein [Thauera sp. MZ1T]
          Length = 1037

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 14/205 (6%)

Query: 5   HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + + E++          +  N  +     + +A     +   +     +D  ++ L+  
Sbjct: 468 EELESEVFELYGDAEDNEKRPNLGALLRTLVGIARRVGDHTALESVDSKYDMLVRNLKQY 527

Query: 63  IEKANAAPIIVAYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                   I++   + + L                          ++ +   + P +   
Sbjct: 528 WAAYPGKKIVLFSFYRNTLHYLARRLAAEGIQSAVLHGGMDKHGVLRHFESTEGPDILIS 587

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 G++LQ+  ++L+ + L W+    +Q I RI    Q        + ++  I  +T
Sbjct: 588 SEVASEGVDLQF-SSLLINYDLPWNPARIEQRIGRIDRIGQ----EAEKILIWNFIYTHT 642

Query: 176 IDELVLQRLRTKSTIQDLLLNALKK 200
           IDE +  RL  +  I    L +++ 
Sbjct: 643 IDERIYDRLLERLDIFRQALGSMEA 667


>gi|120603977|ref|YP_968377.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
 gi|120564206|gb|ABM29950.1| SNF2-related protein [Desulfovibrio vulgaris DP4]
          Length = 1131

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 34/218 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKA 58
           + Y +   +   D                    +A             +       ++  
Sbjct: 749 QAYRQALNKAVEDAGRPGAT----LEALQHIRTIALHPFTPAWGTMTPDAFVNASARLMG 804

Query: 59  LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEW 104
              ++    +     +V          L +   Q                 K    +  +
Sbjct: 805 TFELLTDIRSKGEKALVFVEVKHMQMILAELLQQRFDCEQVLIINGEVSGPKRQERVHAF 864

Query: 105 NEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
              K    +   P + G GL L      ++  + WW+     Q  +R       + G + 
Sbjct: 865 QTRKGFDAILLSPKAAGVGLTLTA-ATHVIHLNRWWNPAVEDQCTDR-----AYRIGQQH 918

Query: 164 AVFVYYLIAQN------TIDELVLQRLRTKSTIQDLLL 195
            V V+Y +A +      + D  + + L  K ++   LL
Sbjct: 919 DVTVHYPMAIHPQLGDASFDVKLHELLERKRSLSRDLL 956


>gi|56475577|ref|YP_157166.1| helicase/SNF2 domain-containing protein [Aromatoleum aromaticum
           EbN1]
 gi|56311620|emb|CAI06265.1| helicase/SNF2 family domain protein [Aromatoleum aromaticum EbN1]
          Length = 883

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  +N G+I        + G G++LQ   + L+   L W+     Q + R+     
Sbjct: 515 REDVCDAFNAGEIR-FLISTEAGGEGIDLQEHCSALIHVDLPWNPMRLHQRVGRL----- 568

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS-TIQDLLLNALK--KETIHV 205
            + G  ++V V  L   +T++ ++ ++L  K   I   L +A+   ++ + +
Sbjct: 569 NRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQL 620


>gi|239827701|ref|YP_002950325.1| SNF2-related protein [Geobacillus sp. WCH70]
 gi|239807994|gb|ACS25059.1| SNF2-related protein [Geobacillus sp. WCH70]
          Length = 555

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +  A   + G 
Sbjct: 371 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMKELFKN-HAQVFIAT-EAGGE 428

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    +NT++E +L
Sbjct: 429 GINLQF-CRHVINYDLPWNPMRLEQRIGRV-----HRLGQTNDVYIYNFAVKNTVEEHIL 482

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 483 TLLYEKIRLFERVVGQL 499


>gi|297745316|emb|CBI40396.3| unnamed protein product [Vitis vinifera]
          Length = 1981

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            ++  +  N  +      +            ++ + K           +      + +   
Sbjct: 1201 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKITMTKLLDILE----EYLQWRRLVYRRID 1256

Query: 90   QGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               +L+     I ++N       +      + G GLNLQ   + +V +    + +     
Sbjct: 1257 GTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQS-ADTVVIYDPDPNPKN---- 1311

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             E   V R  + G  R V V Y+ A + I   +    + K  + D ++NA +
Sbjct: 1312 -EEQAVARAHRIGQTREVKVIYMEAVSLIRNNI---QQYKIDMADEVINAGR 1359


>gi|302559406|ref|ZP_07311748.1| SNF2 family helicase [Streptomyces griseoflavus Tu4000]
 gi|302477024|gb|EFL40117.1| SNF2 family helicase [Streptomyces griseoflavus Tu4000]
          Length = 608

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 68  AAPIIVAYHFNS-------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               +V   F          LA  Q A   G T D++    +   +    +L ++PA+ G
Sbjct: 439 GRKTLVWASFVRSITSLQRLLAPFQPAAVHGGTQDREAELRRFREDPACSVLISNPATLG 498

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G++L    +  V+    +      Q ++RI               +  L A  T+DE+V
Sbjct: 499 EGISLHQDCHDAVYIDRDFQAGRFLQSLDRIHRLG---LSPDVETRITVLAAAGTVDEIV 555

Query: 181 LQRLRTKSTIQDLLLNA 197
             RL  K      +L+ 
Sbjct: 556 AMRLAKKLEFMGRILDD 572


>gi|212638757|ref|YP_002315277.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
 gi|212560237|gb|ACJ33292.1| Superfamily II DNA/RNA helicase, SNF2 family [Anoxybacillus
           flavithermus WK1]
          Length = 547

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
              +   K   + +        +  + ++D+       I+     A  +    F      
Sbjct: 336 TIGALLQKMNDITDHTKAKKALELIQTINDKV------IVFTEYRATQLYLQWFFKQHGI 389

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F  G    K     + +   +  +L A   + G G+NLQ+  + ++ + L W+   
Sbjct: 390 SSVPFRGGFKRSKKDWMKELFQ-HRAQVLIAT-EAGGEGINLQF-CHHVINYDLPWNPMR 446

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +Q I R+      + G  + V +Y  + +NT++E +   L  K  + + ++  L
Sbjct: 447 LEQRIGRV-----HRLGQMKDVHIYNFVVRNTVEEHMFTLLYEKIRLFERVVGEL 496


>gi|308806345|ref|XP_003080484.1| transcription regulatory protein SNF2, putative (ISS) [Ostreococcus
           tauri]
 gi|116058944|emb|CAL54651.1| transcription regulatory protein SNF2, putative (ISS) [Ostreococcus
           tauri]
          Length = 1192

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 58/198 (29%), Gaps = 34/198 (17%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
           ++  +L N        +   +     +      +        +  +              
Sbjct: 770 MELRKLCNHPALNYPPEKGGDFRGPDLVRACGKLWXXXXXXXLWRWTTPDGADLKYCRID 829

Query: 90  QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              +L++    I E+N       +      + G GLNLQ   + +V +    + +     
Sbjct: 830 GTTSLEQREVAINEFNAQHSDKFIFLLSIRAAGRGLNLQT-ADTVVVYDPDPNPKN---- 884

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQN-------------------------TIDELVLQ 182
            E   + R  + G KR V V +  A +                         +++  V  
Sbjct: 885 -EEQAIARAHRIGQKREVRVIHFEAVDDAPNETQSPKDAPAGWGGPNRSYCESLESSVRN 943

Query: 183 -RLRTKSTIQDLLLNALK 199
              + K+ +   +++A +
Sbjct: 944 VIQKQKNEMAAEIVDAGR 961


>gi|212530198|ref|XP_002145256.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210074654|gb|EEA28741.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1117

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTIQEWNEGKIP 110
            I++      +V   + S L  ++            +         +         +  I 
Sbjct: 956  IKEGPPIKSVVFSAWTSHLDLIEIALKDNGLDGFTRIDGTMTLAARKTALNNFAEDDSIT 1015

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   + G GLNL    + +      ++     Q ++R+      + G  R V     
Sbjct: 1016 ILLATIGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV-----HRLGQTREVTTVQF 1069

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + +I+E + +  + K  + +  +   K +   V
Sbjct: 1070 IMKASIEEKIFEMAKKKQQLAEDSMARGKLDKREV 1104


>gi|257052989|ref|YP_003130822.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691752|gb|ACV12089.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 971

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNEGKI 109
           ++E+     +++   +   L  L                      ++      E+N G+ 
Sbjct: 478 LLEEQPDEKLLLFTEYRDTLDYLLDFVQDEPWAEEILVIHGDVDKEERARIEDEFNHGQS 537

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            LLFA   +   G++LQ+  +I+  + L W+    +Q I RI      + G  R V V+ 
Sbjct: 538 RLLFAT-DAASEGIDLQHSCHIMANYELPWNPNRLEQRIGRI-----HRYGQDREVKVWN 591

Query: 170 LIAQNTIDELVLQRLRTKST 189
            +  +T +  + + L+TK  
Sbjct: 592 FLFDDTRESEIFEMLQTKVE 611


>gi|189205653|ref|XP_001939161.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975254|gb|EDU41880.1| DNA repair protein rad5 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1192

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
             +    ++     IIV   F + +              + +    +L K    I  + + 
Sbjct: 1018 QILNWQKEKADVKIIVYTQFLAMIRILKRVFATEGWTCEEYHGKMSLKKRDDAIAAFADT 1077

Query: 108  KIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P+ L A     G GLNL    + ++    WW+    Q         R  + G     F
Sbjct: 1078 AGPVILLASLRCGGLGLNLT-MASKVIMIDPWWNSASEQ-----QAFCRVFRIGQNEKTF 1131

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  L  +NT+DE ++Q    K    D+++  
Sbjct: 1132 MSRLCVKNTVDEHLVQMQERKQEEIDVVMEE 1162


>gi|183233301|ref|XP_654593.2| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801642|gb|EAL49206.2| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 956

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 14/198 (7%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++   + Q++      G+ +E F    + V+   +   A     +     +    I+  +
Sbjct: 368 LRLAAEIQKKKL----GDKVEKFTKQIQFVELYNMTCTAKL---KGVCSFLDKMIIEGKK 420

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASC 119
           +++   +   +     +  +                    +  +  E +I +      + 
Sbjct: 421 LLVFGHHQEMLDGIETYIKENNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAA 480

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+ L    + +VF  L+W          R    R  + G K  V ++YLI + T+D+L
Sbjct: 481 GTGITLHS-ADTVVFAELYWTPGVL-----RQAEDRVHRIGQKNDVRIFYLIGKQTVDDL 534

Query: 180 VLQRLRTKSTIQDLLLNA 197
           +   L  K  I    L+ 
Sbjct: 535 IWPLLEKKLKISGETLDG 552


>gi|330870035|gb|EGH04744.1| SNF2-related:helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 193

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPII 72
           +         +  ++     QL               +   K++ +  ++ + +    +I
Sbjct: 3   EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAELDVDDKVI 47

Query: 73  VAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGH 121
           +   +   +A L++                +  K    I     +    +     ++ G 
Sbjct: 48  LFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFIGTRSAAGT 107

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G NL    N + F  L W               R  + G  R V V   +A++TID+ + 
Sbjct: 108 GYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAEDTIDQQLW 161

Query: 182 QRLRTKSTIQDLLLN 196
           Q L  K  +   L++
Sbjct: 162 QMLMDKRALASDLID 176


>gi|316932603|ref|YP_004107585.1| helicase domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600317|gb|ADU42852.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 956

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            K     +I  +  A    + Y   S L         G T D     ++++ +  +P+L 
Sbjct: 526 NKDGKKVLIFTEYRATQAFILYILRSVLNIESVLIHGGHTADDKRAAVEKFEDD-VPVLI 584

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLN+    +IL+ + L W+     Q I R+      + G K+ V V+   A+
Sbjct: 585 -STEAGGEGLNMHRNCHILINYDLPWNPSRISQRIGRL-----YRYGQKQRVIVFNFHAK 638

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +TID  +L  L  +       ++ +  E
Sbjct: 639 DTIDNEILGVLIDRVMAIVATMSKVSAE 666


>gi|193084056|gb|ACF09729.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           KM3-86-C1]
          Length = 569

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
           H      + I  +E  +        I      S       A   G++       I  +  
Sbjct: 400 HHVIDFVKNIMEIEESVVVFCHHKYIHKLLHESLQEFNPAAIIGGQSDKVRQENIDNFQN 459

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G   L+     +   G+NL      ++F  L W        I R    R  + G K  VF
Sbjct: 460 GGTKLIIVGLRAGNLGINLTR-AKYVIFAELDWSPA-----IHRQAEDRLHRIGQKNTVF 513

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YYLI + T+DE V   L  KS   D +++ 
Sbjct: 514 AYYLIGKRTLDEHVANILVDKSYEIDAIMDE 544


>gi|66800837|ref|XP_629344.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60462710|gb|EAL60912.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 2205

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            R                 I ++N+    I L      +   G NL  GG  ++   L W+
Sbjct: 1937 RDYFRLDGSTPTKTRQRLIDQFNDMANDIKLFLISTKAGSLGTNLT-GGTRVILMDLSWN 1995

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + +R  V R  + G K  V VY L+   T ++    ++  K T+    +++
Sbjct: 1996 P-----VHDRQAVYRCYRMGQKNQVHVYTLVMAGTGEQKTYTQMIYKQTLSKRAVDS 2047


>gi|171692537|ref|XP_001911193.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946217|emb|CAP73018.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1920

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 43/157 (27%), Gaps = 47/157 (29%)

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDP 98
               K+  L+ ++ +       +++ +     +  +++                    +  
Sbjct: 1663 DSGKLAKLDELLRQLKEGGHRVLLYFQMTRMIDLMEEYLTYCNYRYCRLDGSTKLEDRRD 1722

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     +I +                                         + R  +
Sbjct: 1723 TVSDFQTRPEIFIFLLSTR----------------------------------AMDRAHR 1748

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             G  + V VY LI + TI+E + +R   K  +Q +++
Sbjct: 1749 LGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVI 1785


>gi|114558332|ref|XP_001157980.1| PREDICTED: chromodomain helicase DNA binding protein 1-like isoform
           7 [Pan troglodytes]
          Length = 802

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 34/200 (17%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y   ++E              SAS+  K LQ           K        K     
Sbjct: 234 IQRYQDIEKE------------PESASELHKLLQ----PFLLRRVKAEVATELPKKTE-- 275

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPA-- 117
             +   +    +   ++ + L             ++    ++  N   ++     HP   
Sbjct: 276 --VVIYHGMSALQKRYYKAIL-----MKDLDAFENETAKKVKLQNILSQLRKCVDHPYLF 328

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G+NL    + ++F    ++ +      +     R  + G  ++V V  LI ++T++
Sbjct: 329 DGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQNKSVKVIRLIGRDTVE 382

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E+V ++  +K  + ++++  
Sbjct: 383 EIVYRKAASKLQLTNMIIEG 402


>gi|134055899|emb|CAK37377.2| unnamed protein product [Aspergillus niger]
          Length = 987

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 16/164 (9%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
               D  +       + +  L  I +       IV   +   L  L   F Q        
Sbjct: 822 PYPIDSPQANDVYPSKLVTLLTDIRKHYLEDKSIVFSFWRQSLDVLGGMFDQNSISFCRV 881

Query: 91  ---GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 + +     +  N   + +L     +   GLN     + +      W+       
Sbjct: 882 DGIMSPMKRQTMLEEFQNNSAVRVLLMTIGTGAVGLNNLSVASRVHILEPQWNPS----- 936

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +E   + R  + G  + ++V   + + T+++++      K  + 
Sbjct: 937 VESQAIGRALRWGQGKKIYVIRYVMEGTVEKIIESGQLRKLQLS 980


>gi|147677193|ref|YP_001211408.1| hypothetical protein PTH_0858 [Pelotomaculum thermopropionicum SI]
 gi|146273290|dbj|BAF59039.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 1114

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 20/195 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + ++     L  + +E     +K  +  ++       +         + K       + 
Sbjct: 441 EEIEKLDALVLLAKEVEKQEIETKLNRLREVIEEERLRETGTKLLIFTESK--DTLEYLA 498

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +                         G  +D       E+   +  ++ A  A+   G+N
Sbjct: 499 EKIGKK----------WGYSVTTVHGGMGMDARIRAEHEFKN-RAQVMVATEAAG-EGIN 546

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ+   ++V + + W+    +Q + RI      + G K  V +Y L+A +T +  +L++L
Sbjct: 547 LQF-CWLMVNYDIPWNPNRLEQRMGRI-----HRYGQKSEVHIYNLVAADTREGRILEKL 600

Query: 185 RTKSTIQDLLLNALK 199
             K       L + +
Sbjct: 601 FEKLNRMREHLGSDR 615


>gi|224064045|ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2222

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 60/229 (26%)

Query: 30   VKCLQLANGAVYYDEE-----KHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +          K +      K+  L+ I+ K       +++       L 
Sbjct: 1284 MELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGHRVLLFSTMTKLLD 1343

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N       +      + G GLNLQ   +
Sbjct: 1344 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQS-AD 1402

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----------------- 173
             +V +    + +      E   V R  + G  R V V Y+ A                  
Sbjct: 1403 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKEDELRSGG 1457

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK--KETIH 204
                            +I+ L+     + K  + D ++NA +  + T H
Sbjct: 1458 TVDLEDDLVGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTH 1506


>gi|209875457|ref|XP_002139171.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
 gi|209554777|gb|EEA04822.1| SNF2 family N-terminal domain-containing protein [Cryptosporidium
           muris RN66]
          Length = 838

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 93  TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +   +I+ +NE   I +L         GLNL    + ++     W+  +     +  
Sbjct: 672 PKKQRISSIRSFNEQKDILVLLLSKQIGSVGLNLTT-ADRIIIVDPHWNPAQ-----DDQ 725

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            + R  + G K  V VY LI+   I++   +    K+ I    L+  K++  
Sbjct: 726 AIGRAFRIGQKEDVVVYRLISSGAIEDWKFRLQIHKAGIAHFFLHGQKQKVT 777


>gi|115728810|ref|XP_792529.2| PREDICTED: similar to MGC108253 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115946919|ref|XP_001183580.1| PREDICTED: similar to MGC108253 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 338

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 32  CLQLANGAVYYDEEKHWKEV--HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
             +L +      E +  +++     K + L+ ++ +     + +++   F   L  +Q+ 
Sbjct: 141 LHRLCHEYSGLREYRLDQDLVTQSGKFQLLDKMLAELKEQGSRVLLFSQFVMVLDIVQEY 200

Query: 88  ----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                           + +    I ++N    + +      + G G+NL    N ++   
Sbjct: 201 LKIRGHKFVRMDGQTPVAERAQLIDKFNKNDSVFIFMLSTRAGGVGINLTA-ANTVILHD 259

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + ++        ++    R  + G  R V V  L+++ TI+E +L   + K  ++  + +
Sbjct: 260 IDFNP-----YNDKQAEDRCHRVGQTREVSVIRLVSKQTIEEGMLSCAKYKLKLEKQMTS 314

Query: 197 ALKKE 201
            +  E
Sbjct: 315 GISGE 319


>gi|42562605|ref|NP_175265.3| CHR18; ATP binding / DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|332194152|gb|AEE32273.1| chromatin remodeling factor18 [Arabidopsis thaliana]
          Length = 673

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTI 101
            KI A+   +E         +V  H  S L  L +                        +
Sbjct: 468 AKIPAVLDYLENVIEAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALV 527

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  +I        + G G+ L    + ++F  L W   +           R  + G
Sbjct: 528 SDFQDKDEIKAAVLSIRAAGVGITLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIG 581

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 582 QVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 618


>gi|329121768|ref|ZP_08250385.1| SNF2 family helicase [Dialister micraerophilus DSM 19965]
 gi|327468238|gb|EGF13724.1| SNF2 family helicase [Dialister micraerophilus DSM 19965]
          Length = 888

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 24/180 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--------- 87
                 +   + +   K      +++K       ++V   F   L ++            
Sbjct: 681 PEDMYLDLDLENMKSPKFDKGIELVQKLVNEGKKVLVWGIFVDTLYKITNTLREKGINVN 740

Query: 88  -FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G    +    I E+  G + +L ++P + G  ++L    +  V+F   ++L    Q
Sbjct: 741 LVYGGTNKLERTILIDEFRNGDVQVLVSNPQTLGESISLHQTVHDAVYFEYNFNLTFMLQ 800

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ---------NTIDELVLQRLRTKSTIQDLLLNA 197
             +RI           +    YYL              IDE +  RL+ K  +    ++ 
Sbjct: 801 SRDRIHRLG---LDQNQYTRYYYLQTASENFDSFRPGYIDENIYIRLKRKEKLMYEAIDD 857


>gi|307170865|gb|EFN62976.1| Transcription termination factor 2 [Camponotus floridanus]
          Length = 966

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                 +  +N  K    +L       G       GGN L+ F + W+ +   Q  +RI 
Sbjct: 848 KDRQNVVNSFNSQKSGPRILLLSLT-AGGVGLNLVGGNHLLLFDIHWNPQLETQAQDRI- 905

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                + G K+ V++Y  I  +TI+E V      K  I   +L+  + +T
Sbjct: 906 ----YRFGQKKNVYIYKFICVDTIEERVKALQEQKLEIARNVLSGDRNDT 951



 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 11/43 (25%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +++        ++  Q+              +V    I   E 
Sbjct: 702 DVKTHEILVLLLRLRQMCCHPALIHAMLDQDDVKHSGIMNAEN 744


>gi|168205333|ref|ZP_02631338.1| putative helicase with SNF2 domain [Clostridium perfringens E str.
           JGS1987]
 gi|170663173|gb|EDT15856.1| putative helicase with SNF2 domain [Clostridium perfringens E str.
           JGS1987]
          Length = 1015

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 12/162 (7%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAY-----HFNSDLARLQKAFPQGRTLDKDPCTIQE 103
           KE     I   E ++ +     I   Y      F +              + +    I++
Sbjct: 843 KEKVKSTISLAENLLLENEKVVIFTNYTEPAEKFKNHFKNKAVLINGDVPIKERQKIIED 902

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G+  +   +  +   G+ L    NI++F    +    H Q  ERI      + G  +
Sbjct: 903 FQNGESKVFIGNLKAASVGITLTK-ANIVIFNDFDYVPATHIQAEERI-----HRIGQDK 956

Query: 164 AVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNALKKETIH 204
              ++Y  A+N  IDE + + L  K  +   +++    E I 
Sbjct: 957 ECNIFYNYAENIEIDEWIAEMLEKKFNMISKIVDNRDSEFIE 998


>gi|167535991|ref|XP_001749668.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771816|gb|EDQ85477.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1317

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEW 104
            +  L+ I  +   A ++V   F++ L  + +   +                +        
Sbjct: 1092 LMTLDAIWAREPLAKVLVFSQFSNTLTMVGERLKRRHLKFATLVGSMERTQRTNALAGFA 1151

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             +    +      +   G+NL    N +V      +    Q       + R  + G  R 
Sbjct: 1152 KDPSTNVFLLSTRAGAVGINLTE-ANHVVLMDPCVNPATEQ-----QAIGRVHRLGQTRP 1205

Query: 165  VFVYYLIAQNTIDELVLQR 183
            V V+ L+ +++ID  + + 
Sbjct: 1206 VHVHRLLMRHSIDTRIARL 1224


>gi|312198809|ref|YP_004018870.1| SNF2-related protein [Frankia sp. EuI1c]
 gi|311230145|gb|ADP83000.1| SNF2-related protein [Frankia sp. EuI1c]
          Length = 769

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 20/157 (12%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL-------------DK 96
           H  K+  L  I  +   N   ++V   F   L  + +                     ++
Sbjct: 577 HSAKLDRLVDIAREAGQNGQRVVVFSFFLEVLDIVGRRLRADPECGAVFGPITGAVAAEE 636

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++     P +       G         ++++               E   + R 
Sbjct: 637 RQQLVDDFGRRPAPAVLLSQIVAGGTGLNMQAASVVILCEPQVKPTL-----EEQAIARL 691

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + G  R V V+ L+  +++D+ +++ L  K    D 
Sbjct: 692 HRMGQIRTVQVHRLLTTDSVDQRLVEILAAKRVEFDA 728


>gi|161528234|ref|YP_001582060.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
 gi|160339535|gb|ABX12622.1| SNF2-related protein [Nitrosopumilus maritimus SCM1]
          Length = 574

 Score = 66.7 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           I  +E  +       +I      S       +   G++       I ++ +G+  L+ A 
Sbjct: 414 IMEIEESVVVFCHHKVIHKLLHESLQEFSPVSIIGGQSDTLRQDQIDKFQKGESKLMIAG 473

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             +   G+NL      ++F  L W        I R    R  + G +  VF YYLI   T
Sbjct: 474 IRAGNVGINLTR-AKYVIFAELDWSPA-----IHRQAEDRLHRIGQQNTVFAYYLIGNGT 527

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           +D+ V   L  KS   D +++ 
Sbjct: 528 LDDHVANVLVDKSYEIDEIMDE 549


>gi|312110246|ref|YP_003988562.1| SNF2-related protein [Geobacillus sp. Y4.1MC1]
 gi|311215347|gb|ADP73951.1| SNF2-related protein [Geobacillus sp. Y4.1MC1]
          Length = 555

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +  A   + G 
Sbjct: 371 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFKHGKKDWMKELFKN-HAQVFIAT-EAGGE 428

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    +NT++E +L
Sbjct: 429 GINLQF-CRHVINYDLPWNPMRLEQRIGRV-----HRLGQTSDVYIYNFAVKNTVEEHIL 482

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 483 TLLYEKIRLFERVVGQL 499


>gi|328858862|gb|EGG07973.1| hypothetical protein MELLADRAFT_85301 [Melampsora larici-populina
           98AG31]
          Length = 150

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 82  ARLQKAFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                +   G T  +      +   + ++        + G GL++    + +      W+
Sbjct: 8   HIQTCSLHGGMTNTQRTFQLKKFNQDPEVDAFVVSIEAGGVGLDMT-CADEVYIMDAHWN 66

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +  QQ ++R+     ++ G    V V++++ Q+++++ +    + K+++   ++
Sbjct: 67  PQIVQQAVDRV-----QRMGQTHPVNVFHVVVQDSVEQHLFNVQKKKASLASKVI 116


>gi|229828149|ref|ZP_04454218.1| hypothetical protein GCWU000342_00206 [Shuttleworthia satelles DSM
           14600]
 gi|229792743|gb|EEP28857.1| hypothetical protein GCWU000342_00206 [Shuttleworthia satelles DSM
           14600]
          Length = 758

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQ 102
             K   L  I          ++V   F   L+++QK                +     I 
Sbjct: 556 SAKGIRLLEICRAAAEEGRKVLVFSFFLDTLSKVQKLLGDQCLPLITGSVNAETRQNIID 615

Query: 103 EWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + + +   +L     + G GLN+Q   ++++F          +       + R  + G 
Sbjct: 616 RFRDARPGSVLACQIQAGGTGLNIQA-ASVIIFCEPQIKPSLQE-----QAIGRAYRMGQ 669

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-----LLLNALKKETIH 204
            R V V +L+ + T+DE +   L  K  I +      ++    +   H
Sbjct: 670 VRNVLVRHLLCEGTVDERIRDLLERKRDIFENYADSSVMGEENRRGDH 717


>gi|300791026|ref|YP_003771317.1| DNA/RNA helicase [Amycolatopsis mediterranei U32]
 gi|299800540|gb|ADJ50915.1| DNA/RNA helicase [Amycolatopsis mediterranei U32]
          Length = 608

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 55  KIKALEVIIEKA--NAAPIIVAYHFNS-------DLARLQKAFPQGRTLDKDPCTIQEWN 105
           K + +  I+++        +V   F          L   + A   G T D++       +
Sbjct: 423 KYQEVLAIVKENSAQGRKTLVWASFVRSISTLETLLGDFRPAVVHGGTADREEQIDFFRS 482

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +L ++PA+ G G++L    +  V+    +      Q ++RI              
Sbjct: 483 DPDCLVLISNPATLGEGISLHQVCHDAVYVDRDFQAGRFLQSLDRIHRLG---LAPDTET 539

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  L  ++T+DE+V  RL  K      LL+ 
Sbjct: 540 RVTVLATRHTVDEVVAMRLNEKLEFMGKLLDD 571


>gi|56759244|gb|AAW27762.1| SJCHGC05261 protein [Schistosoma japonicum]
          Length = 141

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    A  G GLNL  G + ++F    W+  +     +   + R  + G  R V VY LI
Sbjct: 1   MLLTTAVGGLGLNLT-GADTVIFVEHDWNPSK-----DLQAMDRAHRIGQLRTVNVYRLI 54

Query: 172 AQNTIDELVLQRLRTKSTIQDLLL 195
            +N+++E ++     K  +   +L
Sbjct: 55  TENSVEEQIMNLQAFKLYLATTVL 78


>gi|167757932|ref|ZP_02430059.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
 gi|167664364|gb|EDS08494.1| hypothetical protein CLOSCI_00267 [Clostridium scindens ATCC 35704]
          Length = 470

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--- 86
            + +   +G+ +   E     + + +IK L  I+ +      I+   + S++ ++ +   
Sbjct: 269 KRLIFNKSGSHFDAVEMFHDPMDNPRIKMLMNILAEE---KTIIFCRYESEIEQICRIIP 325

Query: 87  ---AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               F       K    ++ +  G    L A+    G  LNLQ+  + +++ S  WDL +
Sbjct: 326 GAVRFDGKVPQRKRDIALRRF-AGDSDYLIANRNCAGFSLNLQF-CHNIIYMSNDWDLGK 383

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             Q  +R+      + G    V++  + A+NTIDE +L+ L  K  I + +
Sbjct: 384 RMQSEDRV-----HRLGQGHDVYITDICAENTIDEQILKCLSRKENILECI 429


>gi|229143655|ref|ZP_04272078.1| hypothetical protein bcere0012_8220 [Bacillus cereus BDRD-ST24]
 gi|228639834|gb|EEK96241.1| hypothetical protein bcere0012_8220 [Bacillus cereus BDRD-ST24]
          Length = 642

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 76/244 (31%), Gaps = 53/244 (21%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY--DEEKHWKEVHDEKIKA 58
            Y   +++   DL   ++   +    +K ++ +Q A+         ++    +       
Sbjct: 371 IYETLEQKTIKDLVDNDVGLVDEFKKAKIIRLMQAASNPYLLLKPIQEGISGIDYSPKTF 430

Query: 59  LEVIIEK-------------------------ANAAPIIVAYHFNSDLARL--------- 84
            E +I                                +IV   +   + R          
Sbjct: 431 DEELINTLINYERTNSVPPKFDAALKLIQDLIRRDEKVIVWAIYIDTVERFSDYLLENGI 490

Query: 85  QKAFPQGRTLDK----------DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNIL 132
           +     G+T  +              I+E++  +    ++ A+P +    ++L    +  
Sbjct: 491 ECKILYGKTKVESEGLDEAVETREKIIREFHSDESEFKVIIANPFAVAESISLHKACHNA 550

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           ++    +D   + Q  +RI                YYLI +N+IDE++  RL  K  +  
Sbjct: 551 IYLERNFDGARYVQSKDRIHRYGLGMNTITN---YYYLITENSIDEVIDDRLIEKENLMI 607

Query: 193 LLLN 196
            +  
Sbjct: 608 RVTE 611


>gi|222476088|ref|YP_002564609.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454459|gb|ACM58723.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 969

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 60/145 (41%), Gaps = 18/145 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEW 104
           + ++ ++E+     I++   +   L  +                  G   +       E+
Sbjct: 471 RYIQQLLEEQPNEKILLFTEYRDTLDYILDLVKDEPWADEILVIHGGVDKEDRTRIEDEF 530

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N G+  LLFA   +   G++LQ+  +I+V + L W+    +Q I R+      + G ++ 
Sbjct: 531 NHGQSRLLFAT-DAASEGIDLQHSCHIMVNYELPWNPNRLEQRIGRL-----HRYGQEKE 584

Query: 165 VFVYYLIAQNTIDELVLQRLRTKST 189
           V V+    ++T +  V + L+ K  
Sbjct: 585 VTVWNFSFEDTRESKVFEMLQDKVE 609


>gi|225678359|gb|EEH16643.1| XNP-1 [Paracoccidioides brasiliensis Pb03]
          Length = 1657

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +     + + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1281 RTYSRLDGKTPIATRQISTKNFNSGSYTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1339

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   E   V R  + G ++ VFVY  +A  T ++++  +   K+ +   +++ + 
Sbjct: 1340 T-----WEEQAVGRAYRLGQRKPVFVYRFLAGGTFEDIMHNKAVFKTQLSYRVVDKMN 1392


>gi|226290585|gb|EEH46069.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1761

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +     + + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1381 RTYSRLDGKTPIATRQISTKNFNSGSYTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1439

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   E   V R  + G ++ VFVY  +A  T ++++  +   K+ +   +++ + 
Sbjct: 1440 T-----WEEQAVGRAYRLGQRKPVFVYRFLAGGTFEDIMHNKAVFKTQLSYRVVDKMN 1492


>gi|323455652|gb|EGB11520.1| hypothetical protein AURANDRAFT_17567 [Aureococcus anophagefferens]
          Length = 100

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L       G GLNL    N +     WW+       +E   + R  + G  R V    L
Sbjct: 1   VLLVSLKCGGTGLNLTR-ANHVFLLDTWWNAA-----VEEQAMDRVHRLGQTRPVTAVRL 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +A  T++  +L   + K+ +    L  L  + + 
Sbjct: 55  VADKTVESRILDIQQAKTLVSAGALARLSADEVR 88


>gi|242762396|ref|XP_002340369.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218723565|gb|EED22982.1| nucleosome remodeling complex ATPase subunit (Snf2h), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 534

 Score = 66.3 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 30/179 (16%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKA---NAAP 70
           +  +  +   ++   +++ +  +   +          +   K   L+ ++E+    +   
Sbjct: 362 SVTNILMDLRKICIHSLFVEGFEEIDDDTDIDVANLMLGSSKFILLKRLLEQEVTKDRKK 421

Query: 71  IIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           I++   F+  L   +           +         +     +  NE +  +      + 
Sbjct: 422 ILIFSGFDYALNCCEALLAAMGISCLRLDGNTCYSLRRYNIHRFRNESECKVFIMATRAG 481

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
           G G+ L     ++VF  + W+ +            R  + G  + V +Y L    T++E
Sbjct: 482 GEGITLTA-AEVVVFLDMDWNPQVT-----AQAEARAYRLGQTKPVTIYKLCTSGTVEE 534


>gi|317158963|ref|XP_001827440.2| DNA repair helicase rad5,16 [Aspergillus oryzae RIB40]
          Length = 1113

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 50   EVHDEKIKALEVI----IEKANAAPIIVAYHFNSDLARLQKAFPQGR-----------TL 94
            E+   K+  ++ I    I++     I++   F   L  +     + +             
Sbjct: 923  EMTSAKLVKIQEIVKGWIDENPDVKIVIFTQFLDFLRLVGLMCNKEKWVATSLHGKLSLQ 982

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             ++    +  +E ++ +L A   + G GL++    N  +   LWW+    Q         
Sbjct: 983  AREQSMDKFRDEKEVRILIASLKAGGIGLDM-SMANKCILVDLWWNEAIQQ-----QAFC 1036

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V    +I +++IDE +L+    K+      +  
Sbjct: 1037 RLYRIGQSKDVEFVKIIIKDSIDEYLLKMQTRKTANISGTMGD 1079


>gi|157692957|ref|YP_001487419.1| SNF2 family helicase [Bacillus pumilus SAFR-032]
 gi|157681715|gb|ABV62859.1| possible SNF2 family helicase protein [Bacillus pumilus SAFR-032]
          Length = 556

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  I    F          F  G    K       + E +  +L A   + G 
Sbjct: 373 IIFTEYRATQIYLQWFLQQNGISSVPFRGGFKRGKKDWMKDLFRE-RAQVLIAT-EAGGE 430

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+  N ++ + L W+    +Q I RI      + G +R V +Y +    T++E +L
Sbjct: 431 GINLQF-CNQIINYDLPWNPMRLEQRIGRI-----HRLGQERDVHIYNMATNGTVEEHIL 484

Query: 182 QRLRTKSTIQDLLLNAL 198
           + L  K  + + ++  L
Sbjct: 485 KLLYEKIQLFENVIGDL 501


>gi|323487866|ref|ZP_08093124.1| SNF2 family DNA/RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323398600|gb|EGA91388.1| SNF2 family DNA/RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 851

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L             ++    I  +   +I +L  +P +    ++L    +  ++    ++
Sbjct: 712 LGIKAAVIYGSTPQEERDAIIGMFKNNEIEVLITNPHTLAESVSLHKTCHDAIYLEYSFN 771

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLL 194
           L    Q  +RI           +    YY + +       TIDE +  RL+ K    + +
Sbjct: 772 LTHMLQSRDRIHRLG---LPSNQYTQYYYFMLEGQEEKRNTIDEKIYIRLKEKE---ERM 825

Query: 195 LNALKKETI 203
           L A++ + +
Sbjct: 826 LEAIEGDVL 834


>gi|326478247|gb|EGE02257.1| SNF2 family helicase [Trichophyton equinum CBS 127.97]
          Length = 979

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 61  VIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK-DPCTIQEWNEGKIP 110
             ++++    I +   F   +            +     G+   +     I+ + E  + 
Sbjct: 760 KWLKESPNIKITIFTQFLGMIGAISSICEAEGWRYITLCGKLHHRTRHANIKRFREENVS 819

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L +   + G GLNL    +  +   LWW+     + IE+    R  + G K  V +  +
Sbjct: 820 ILISSLKAGGVGLNLT-MASKCILVDLWWN-----EAIEQQAFCRLFRIGQKNDVEIVRI 873

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +NT+D+ +      KS      + +
Sbjct: 874 CVENTVDDRLQLIQSRKSEHIRKAMGS 900


>gi|116492331|ref|YP_804066.1| SNF2 family DNA/RNA helicase [Pediococcus pentosaceus ATCC 25745]
 gi|116102481|gb|ABJ67624.1| Superfamily II DNA/RNA helicase, SNF2 family [Pediococcus
           pentosaceus ATCC 25745]
          Length = 860

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L         G  + +    I+++  G   +L  +P +    ++L    +  ++    ++
Sbjct: 718 LGHKVAVIYGGTPVGEREKIIKDFQCGLYDVLVTNPHTLAESVSLHMIAHDALYLEYSFN 777

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLL 194
           L    Q   RI     ++  +      YY + +       TID  +  RL  K  I    
Sbjct: 778 LTHMLQSRNRIHRLGLKKGDYTS---YYYFMLEGQQNRRNTIDWKIYNRLNEKRDIMVDT 834

Query: 195 LN 196
           + 
Sbjct: 835 IE 836


>gi|119386548|ref|YP_917603.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119377143|gb|ABL71907.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 636

 Score = 66.3 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 37/229 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYDEEKHWKEV----------- 51
           ++F R     +     +A    ++   ++ LQL+             +V           
Sbjct: 364 NEFLRNYSKQISRGMGDAQFLKARRSVMRLLQLSVNPTLALSAMANDDVKVDSAIVDQLL 423

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQ---------------KAFPQG 91
              H  K++A+         +    ++   F   +                    +    
Sbjct: 424 DEGHSAKMRAVMDHAYALARDGKKCVIWTIFTDTIHSFVSALADLNPVYIHGGVPSGLPS 483

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++    +   +    +L A+PA+ G G++L    +  ++    +    + Q I+RI
Sbjct: 484 DPETREGRIRRFHEDPGCFVLVANPAAAGEGISLHTVCHNAIYADRSYVSTHYLQSIDRI 543

Query: 152 GVTRQRQAGFKRAVFVYYLIAQ---NTIDELVLQRLRTKSTIQDLLLNA 197
                     +  + +Y   A     +ID  V +RL  K      LL+ 
Sbjct: 544 HRLGLA-PDEETHIHIYRSKAPPVIGSIDMSVSRRLVEKIRNMQQLLDD 591


>gi|94263334|ref|ZP_01287149.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
 gi|93456289|gb|EAT06419.1| SNF2-related:Helicase-like [delta proteobacterium MLMS-1]
          Length = 952

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 58/174 (33%), Gaps = 24/174 (13%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           +   + N               +EK+      ++   +    +   +   L +       
Sbjct: 774 RLRAMIN-------VMDELFAKNEKLLVFVEFLDLQESLIPYLQQRY--LLPKPPLRISG 824

Query: 91  GRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +  K    +  + + +     ++   P + G GL L    N ++  + WW+     Q 
Sbjct: 825 KVSGAKRKSLVDSFQQSRSNLFDVMLLSPKAGGVGLTLTA-ANNVIHLTRWWNPAVEDQC 883

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
            +R+      + G  + V VY  +A      +++ D+ +   L  K  +   +L
Sbjct: 884 TDRV-----YRIGQNKPVNVYLPLAIHPRFNEHSFDQNLHLLLERKRKLSRSVL 932


>gi|195576640|ref|XP_002078183.1| GD23310 [Drosophila simulans]
 gi|194190192|gb|EDX03768.1| GD23310 [Drosophila simulans]
          Length = 755

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           +E       E   A   AS+ +     A              +     +  + II   + 
Sbjct: 487 KETLDAFNKELKTAKGRASEEILLRFYAR-TAEVKTRAVCAYLKTIVKEQKKFIIFAHHR 545

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQY 127
             +     F S L             D    ++  + +     +      +C  G+ L  
Sbjct: 546 VMMDAISDFLSGLKVHYIRIDGQTRSDLRSDSVDTFQKKSSCKVALLSLKACNSGITLTA 605

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              I+VF  L W+             +R  + G  + V   YL+A NT D+++   L+ K
Sbjct: 606 -AEIIVFAELDWNPSTL-----AQAESRAHRIGQTKPVICRYLMAHNTADDIIWNMLKNK 659

Query: 188 STIQDLL 194
             +   +
Sbjct: 660 QEVLSKV 666


>gi|4056415|gb|AAC97989.1| Similar to the end of DNA repair protein gb|X74615 (rad8) gene
           [Arabidopsis thaliana]
          Length = 95

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G  LNL    + +     WW+       +ER    R  + G  + + V   I +NT++E
Sbjct: 4   GGVALNLT-VASHVFMMDPWWNPA-----VERQAQDRIHRIGQYKPIRVVRFIIENTVEE 57

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            +L+  + K  + +  +  
Sbjct: 58  RILRLQKKKELVFEGTVGG 76


>gi|302206285|gb|ADL10627.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
          Length = 920

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQE 103
            K++ +  + ++  +    I++  +F   L RL   F Q             K    +  
Sbjct: 723 AKVERIIELADEAASEGRNILIFSYFRDVLDRLHLEFDQRSVGIINGDVAPIKRQELVDT 782

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L A   + G GLN+Q   ++++               E   + R  + G  +
Sbjct: 783 LGANGQDILLAQIGAGGVGLNIQK-ASVVILTEAQVKPAL-----EDQAIARAHRMGQTK 836

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V VY ++   TIDE +L+    K  + D 
Sbjct: 837 PVSVYRILGDETIDERLLEINAQKRKLFDE 866


>gi|300858572|ref|YP_003783555.1| hypothetical protein cpfrc_01155 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686026|gb|ADK28948.1| hypothetical protein cpfrc_01155 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330842|gb|ADL21036.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276527|gb|ADO26426.1| Putative SNF2 family DNA/RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 920

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQE 103
            K++ +  + ++  +    I++  +F   L RL   F Q             K    +  
Sbjct: 723 AKVERIIELADEAASEGRNILIFSYFRDVLDRLHLEFDQRSVGIINGDVAPIKRQELVDT 782

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
                  +L A   + G GLN+Q   ++++               E   + R  + G  +
Sbjct: 783 LGANGQDILLAQIGAGGVGLNIQK-ASVVILTEAQVKPAL-----EDQAIARAHRMGQTK 836

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V VY ++   TIDE +L+    K  + D 
Sbjct: 837 PVSVYRILGDETIDERLLEINAQKRKLFDE 866


>gi|46255694|gb|AAH05038.1| CHD1L protein [Homo sapiens]
          Length = 789

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 72/200 (36%), Gaps = 34/200 (17%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y   ++E              SAS+  K LQ           K        K   + 
Sbjct: 220 IQRYQDIEKE------------SESASELHKLLQ----PFLLRRVKAEVATELPKKTEVV 263

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPA-- 117
           +     +    +   ++ + L             ++    ++  N   ++     HP   
Sbjct: 264 I----YHGMSALQKKYYKAIL-----MKDLDAFENETAKKVKLQNILSQLRKCVDHPYLF 314

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G G+NL    + ++F    ++ +      +     R  + G  ++V V  LI ++T++
Sbjct: 315 DGGVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQNKSVKVIRLIGRDTVE 368

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E+V ++  +K  + ++++  
Sbjct: 369 EIVYRKAASKLQLTNMIIEG 388


>gi|297849318|ref|XP_002892540.1| hypothetical protein ARALYDRAFT_888252 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338382|gb|EFH68799.1| hypothetical protein ARALYDRAFT_888252 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 598

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 14/142 (9%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLL 112
            ++    +A  ++   + S L  +++              + D      +   +G+  +L
Sbjct: 442 WMLGTDESAKAVIFSRYKSFLELIERQLTKSGLRCVKLSESADGKAALQRFKEDGQCKIL 501

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                  G  L+L    + +      W+      + +R  + R +     +   +   I+
Sbjct: 502 LTTFEIVGDLLDL-SVASHVFLMDPGWNP-----ITDRQALARVQTVRQSKPTRMVKFIS 555

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           + TI+E ++  L+ K      +
Sbjct: 556 KGTIEEKIIDVLQEKQNTLAGV 577


>gi|222624248|gb|EEE58380.1| hypothetical protein OsJ_09537 [Oryza sativa Japonica Group]
          Length = 1474

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 22/156 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------------LQKAFPQGRTLDKD 97
              K     + + +A    ++V   +   L                        G T D+ 
Sbjct: 1269 KAKFVHNLLSLSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQR 1328

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N      + F    +CG G++L  G + +V   +  +       + R  + R 
Sbjct: 1329 EQAVHRFNNSPDARVFFGSIKACGEGISL-VGASRIVILDVHENPS-----VMRQAIGRA 1382

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  + V+ Y L+A ++ +E        K  +  
Sbjct: 1383 YRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSK 1418


>gi|302834136|ref|XP_002948631.1| hypothetical protein VOLCADRAFT_58399 [Volvox carteri f.
           nagariensis]
 gi|300266318|gb|EFJ50506.1| hypothetical protein VOLCADRAFT_58399 [Volvox carteri f.
           nagariensis]
          Length = 584

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+NL    N +V   LWW+    +Q I+R       + G  R V V  +   
Sbjct: 482 VSLKAAALGVNLT-VANHVVLMDLWWNPTTEEQAIDR-----AHRIGQTRTVHVTRITIA 535

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            ++++ +L+  + K  +    L
Sbjct: 536 GSVEDRILELQQVKRELVAAAL 557


>gi|308811198|ref|XP_003082907.1| SNF2 domain-containing protein / helicase domain-containing protein
           (ISS) [Ostreococcus tauri]
 gi|116054785|emb|CAL56862.1| SNF2 domain-containing protein / helicase domain-containing protein
           (ISS) [Ostreococcus tauri]
          Length = 596

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           I    +   +     F                       + ++  +    +      + G
Sbjct: 382 IFFAHHGVMLDAVSAFLEKKKCKHIRIDGSTPSAARGDLVNKFQRDDSTRIAVLSIKAAG 441

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL L    + ++F  + W   +           R  + G   +V V YL A++TIDE++
Sbjct: 442 MGLTLTA-ASTVIFGEMVWTPGDLI-----QAEDRAHRIGQASSVLVQYLHARDTIDEII 495

Query: 181 LQRLRTKSTIQDLLLNALKKETIH 204
            Q +R K      +LN    + + 
Sbjct: 496 WQTIRRKLDTLGTVLNGQSGDHLE 519


>gi|315048351|ref|XP_003173550.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
            CBS 118893]
 gi|311341517|gb|EFR00720.1| ISWI chromatin-remodeling complex ATPase ISW2 [Arthroderma gypseum
            CBS 118893]
          Length = 1808

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 68   AAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               +++   +   L           +          +       + +++    +      
Sbjct: 1332 GDKVLIFSGYLHTLTYLGSMLEARGQKFCRLDGKTPIATRQTATKNFSDSDAHVYLISTK 1391

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GLN+  G N ++ F   ++        E   + R  + G  + VFVY  +   T +
Sbjct: 1392 AGALGLNI-IGANRVIIFESEYNPT-----WEEQAIGRAYRLGQAKDVFVYRFVMGGTFE 1445

Query: 178  ELVLQRLRTKSTIQDLLLN 196
            EL+ ++   K  +    ++
Sbjct: 1446 ELIHEKGVFKKNMALRAVD 1464


>gi|242819355|ref|XP_002487301.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218713766|gb|EED13190.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1114

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 18/155 (11%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTL------------DKDPCTIQEWNEGKIP 110
            ++       ++   + S L  ++ A                    +         +  I 
Sbjct: 953  LKDEPPIKSVIFSGWTSHLDLIEIALKDHGLNGFTRIDGTMSLAARKAALNSFAEDKDIT 1012

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   + G GLNL    + +      ++     Q ++R+      + G  R V     
Sbjct: 1013 ILLATIGAGGVGLNLTS-ASRVYIMEPQYNPAAVAQAVDRV-----HRLGQTREVTTVQF 1066

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I + +I+E + +  + K  + +  +   K +   V
Sbjct: 1067 IMKASIEEKIFEMAKKKQQLAEDSMARGKLDKREV 1101


>gi|91089449|ref|XP_967843.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
 gi|270011408|gb|EFA07856.1| hypothetical protein TcasGA2_TC005426 [Tribolium castaneum]
          Length = 661

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 8/141 (5%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPLLF 113
           +K+ +  +  A+   ++ A     D   ++     G T  +       +        +  
Sbjct: 460 LKSGQKFLVFAHHQIMLNAVCNVLDKKNVKYIRIDGSTTSEQRKFFVDKFQLNDDCLVAV 519

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +   G+ L     +++F  L W+             +R  + G +  V + YL+A 
Sbjct: 520 LSITAANAGITLTA-AQLVLFAELHWNPSILS-----QAESRAHRIGQQNPVIIKYLLAP 573

Query: 174 NTIDELVLQRLRTKSTIQDLL 194
            T D+ +   L+ K  I + +
Sbjct: 574 GTADDSIWPMLQNKQKILEEV 594


>gi|224139690|ref|XP_002323229.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867859|gb|EEF04990.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 743

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I+E+ +     +L A   +   G+NL    + +     WW+  + ++      +  
Sbjct: 631 QAEIIKEFGSARPGTVLLASLKTSVFGINLTA-ASKVYLLEPWWNSADEER-----AINC 684

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K  V +  LIAQN+I+E +L+    K    + 
Sbjct: 685 VHRYGQKENVRIVRLIAQNSIEERILEMQERKKLASEA 722


>gi|302758372|ref|XP_002962609.1| hypothetical protein SELMODRAFT_404507 [Selaginella moellendorffii]
 gi|300169470|gb|EFJ36072.1| hypothetical protein SELMODRAFT_404507 [Selaginella moellendorffii]
          Length = 760

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
            I V   +   L  L+ A     +  +   +I E+ +  I ++        +GLNL    
Sbjct: 319 KIFVFSTWQEVLDLLEHALKSTSSAGQMGSSILEFKKENIQVMLLPIQHGANGLNL-IEA 377

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             ++      +       +E   + R  + G +    V+  I  NT++E + +  + K+ 
Sbjct: 378 QHVILVEPLLNPA-----VEAQAINRVHRIGQRLKTLVHRFIICNTVEENIYKMSQQKTN 432

Query: 190 I 190
           +
Sbjct: 433 L 433


>gi|239977351|sp|A4HVU6|JBP2_LEIIN RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
          Length = 1098

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             +I      +  ++     +          +     +     +      + +L       
Sbjct: 912  LIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIA 971

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             +GL+     N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ 
Sbjct: 972  AYGLDFTA-ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKF 1024

Query: 180  VLQRLRTKSTIQDLLLNA 197
            VL+    K  +   +L+ 
Sbjct: 1025 VLRSQTRKIALFKCILHE 1042


>gi|295399151|ref|ZP_06809133.1| SNF2-related protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978617|gb|EFG54213.1| SNF2-related protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 555

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +  A   + G 
Sbjct: 371 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWMKELFKN-HAQVFIAT-EAGGE 428

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    +NT++E +L
Sbjct: 429 GINLQF-CRHVINYDLPWNPMRLEQRIGRV-----HRLGQTSDVYIYNFAVKNTVEEHIL 482

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 483 TLLYEKIRLFERVVGQL 499


>gi|311110806|ref|ZP_07712203.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
 gi|311065960|gb|EFQ46300.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           MV-22]
          Length = 761

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK 96
           + +   +KI+ +  I      N+  +IV   F + + +L K               + ++
Sbjct: 562 FIDEDSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQ 621

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++       +L     + G GLN+Q   N ++     W         E   ++R
Sbjct: 622 RQEVIDKFSENPNQNVLLVQIDAGGFGLNIQA-ANRVILCEPQWKPST-----ENQAISR 675

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 676 AYRMGQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 712


>gi|313901547|ref|ZP_07834991.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
 gi|313468186|gb|EFR63656.1| SNF2-related protein [Thermaerobacter subterraneus DSM 13965]
          Length = 524

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 36/226 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW------------- 48
           + Y    R +  +     +         +   ++ + +                      
Sbjct: 247 ELYQAVLRAVREEYAERRLYNGTVLPLLMLQREVCSSSHALRATLDRLAGSEGWQSLAWA 306

Query: 49  ------KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------- 95
                 ++V +     +   + +    P++V   F +    L +   +            
Sbjct: 307 RVRELARQVEENHKALMLERLVEKLDEPVVVFTEFRATQDYLARRLRRAGVETVIYHGAM 366

Query: 96  ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +       + +G   +L       G GLNLQ+    +V + L W+    +Q I R+ 
Sbjct: 367 GACERDAAKARFRKGA-RVLI-STECGGQGLNLQF-CRNVVNYDLPWNPMRVEQRIGRVH 423

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              Q        V V+ L A+ TI+E +L+ L  K  +   ++  +
Sbjct: 424 RLGQ----EAETVRVFNLYARRTIEEYILRLLDEKINLFRQVIGEI 465


>gi|311899397|dbj|BAJ31805.1| hypothetical protein KSE_60370 [Kitasatospora setae KM-6054]
          Length = 776

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 27/162 (16%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ------------------GR 92
             K++ L  +  +   +   ++V  +F   LA ++ A                       
Sbjct: 582 SAKLRRLRELTAEAAESGHKVVVFSYFREVLAAVRDALGAAGGGDSGSGSTVVGTIAGSL 641

Query: 93  TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             ++    + E+   +   +L     + G GLNLQ   N+++               E  
Sbjct: 642 PAEQRQELVDEFTAVQGHAVLLCQIQAGGLGLNLQA-ANVVILCEPQLKPTL-----EDQ 695

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            V R ++ G  R V V+ L+A +++D  +++ L+ K+ + D 
Sbjct: 696 AVARAQRMGQIRRVRVHRLLASDSLDHRLVELLKGKAELFDR 737


>gi|119192670|ref|XP_001246941.1| hypothetical protein CIMG_00712 [Coccidioides immitis RS]
          Length = 980

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++     +   +  I +L +   + G GL+L       +   LWW+    Q      
Sbjct: 845 PPSERHREIEEFRTDPSIRVLISSLKAGGTGLSLT-MAEKCILIDLWWNEAMEQ-----Q 898

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G K+ V +  +  +N+ID+ +      KS+  +  + 
Sbjct: 899 AFCRLFRYGQKKEVEIVRITVKNSIDDRIQLIQNAKSSNIEKTMG 943


>gi|297484680|ref|XP_002694499.1| PREDICTED: E1A binding protein p400 [Bos taurus]
 gi|296478660|gb|DAA20775.1| E1A binding protein p400 [Bos taurus]
          Length = 3095

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            +  ++         E    +    K++AL ++++K  +    +++       L  L+   
Sbjct: 1834 QLQRMTALHSLRFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFL 1893

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I        S   G++L    + +VF+  
Sbjct: 1894 NFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGVSL-VEADAVVFYDH 1952

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +      +++        + G ++ V +Y L++ N+I+E +L+
Sbjct: 1953 DLNP-----VMDAKAQEWCDRIGRRKDVHIYRLVSGNSIEEKLLK 1992


>gi|194674605|ref|XP_878269.3| PREDICTED: E1A binding protein p400 isoform 5 [Bos taurus]
          Length = 2680

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            +  ++         E    +    K++AL ++++K  +    +++       L  L+   
Sbjct: 1419 QLQRMTALHSLRFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFL 1478

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I        S   G++L    + +VF+  
Sbjct: 1479 NFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGVSL-VEADAVVFYDH 1537

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +      +++        + G ++ V +Y L++ N+I+E +L+
Sbjct: 1538 DLNP-----VMDAKAQEWCDRIGRRKDVHIYRLVSGNSIEEKLLK 1577


>gi|145356928|ref|XP_001422675.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582918|gb|ABP00992.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 638

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 35/222 (15%)

Query: 5   HKFQRELYCDL-------------QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
            + ++++  DL             +    +     S   +  Q     +      +   +
Sbjct: 366 RRLKKDVLKDLPPKQRTQVWLALEKSSMGDVRRIKSLLDELRQRGGNELEEKRLLNELFL 425

Query: 52  HDEK-----IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDK 96
              K     +      +   + +  +   H    L  + +                    
Sbjct: 426 ASAKAKTKSVCEYLETLIDGSTSKFLFFAHHGVLLDAVAQCMDAKKVKTIRIDGSTPAAV 485

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +     + +      + G GL L    + ++F  + W   +           R
Sbjct: 486 RGDLVNAFQRRDDVRVAILSIKAAGMGLTLTA-ASTVIFGEMVWTPGDLI-----QAEDR 539

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G + +V V YL A++TIDE++ Q ++ K      +LN 
Sbjct: 540 AHRIGQQSSVLVQYLHAKDTIDEIIWQSIKKKLDNLGAVLNG 581


>gi|282852065|ref|ZP_06261423.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
 gi|282556825|gb|EFB62429.1| SNF2 family N-terminal domain protein [Lactobacillus gasseri 224-1]
          Length = 424

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK 96
           + +   +KI+ +  I      N+  +IV   F + + +L K               + ++
Sbjct: 225 FIDEDSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQ 284

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++       +L     + G GLN+Q   N ++     W         E   ++R
Sbjct: 285 RQEVIDKFSENPNQNVLLVQIDAGGFGLNIQA-ANRVILCEPQWKPST-----ENQAISR 338

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 339 AYRMGQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 375


>gi|194214436|ref|XP_001915685.1| PREDICTED: E1A binding protein p400 [Equus caballus]
          Length = 3092

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R     L+           +                E    +    K++AL ++
Sbjct: 1812 LYSHRMRIFRHCLKEHTAPYAQQLQQMTALR------SLQFPELRLVQFDSGKLEALAIL 1865

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1866 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRI 1925

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G++L    + +VF+    +      +++        + G ++ V +Y 
Sbjct: 1926 FCAILSTHSRATGVSL-VEADAVVFYDNDLNP-----VMDAKAQEWCDRIGRRKDVHIYR 1979

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1980 LVSGNSIEEKLLK 1992


>gi|317419683|emb|CBN81720.1| Helicase SRCAP [Dicentrarchus labrax]
          Length = 429

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 38/199 (19%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------------- 49
            Y  F  +        +    +  +  ++  ++ N    +D                   
Sbjct: 237 LYDDFMAQASTRETLASGHFMSVINILMQLRKVCNHPNLFDPRPIQSPFITQPIVFHTAS 296

Query: 50  ------EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
                 EV   K++ L  ++ K       +++       L  L++       +       
Sbjct: 297 LVQDALEVSPLKLQTLHTLLRKLKTGGHRVLIFTQMTRMLDVLEQFLNYHGHIYLRLDGS 356

Query: 96  ----KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +    ++ +N + +I        S G G+NL  G + +VF+   W+       ++ 
Sbjct: 357 TRVEQRQALMERFNADRRIFCFILSTRSGGVGVNLT-GADTVVFYDSDWNPT-----MDA 410

Query: 151 IGVTRQRQAGFKRAVFVYY 169
               R  + G  R V +Y 
Sbjct: 411 QAQDRCHRIGQTRDVHIYR 429


>gi|261415452|ref|YP_003249135.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371908|gb|ACX74653.1| helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 876

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 36/221 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +RE       E   +  + ++ +K ++     +    EK  K   + +I  +  II
Sbjct: 397 YGEDEREG---FDDEATISVQTLAEPLKLMENEIDHINLLLEKATKVTSETRINRIVEII 453

Query: 64  EK-ANAAPIIVAYHFNSDLARL--------------------------QKAFPQGRTLDK 96
           ++      +++   +    + +                                      
Sbjct: 454 KEKYPNDQVLLFTEYKRTQSLMMTELMKVWGDNSVTIINGDESLKDVVYPDGCSRDISIS 513

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +++N G++        + G G++LQ   ++L+   L W+     Q + R+     
Sbjct: 514 RNDACEKFNNGEVR-FLISTEAAGEGIDLQKNCHVLIHIDLPWNPMRLHQRVGRV----- 567

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G    V V  +   + I+  +   L  K      +L+ 
Sbjct: 568 HRLGQTHDVEVVSVRNPDNIESKIWGYLEEKIDQIQKMLSE 608


>gi|242212599|ref|XP_002472132.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728776|gb|EED82663.1| predicted protein [Postia placenta Mad-698-R]
          Length = 468

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      + G G+NL    +I+V +             +   + R  + G  + V
Sbjct: 10  DSDKFIFLLTTRAGGLGINLTT-ADIVVLYDSD-----LISQADLQAMDRAHRIGQTKQV 63

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +V+  I + +++E +L+R   K  +  L++ 
Sbjct: 64  YVFRFITEGSVEERMLERTAQKLRLDQLVMQ 94


>gi|326437103|gb|EGD82673.1| hypothetical protein PTSG_03334 [Salpingoeca sp. ATCC 50818]
          Length = 884

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R  +      +  ++    +   +    +      + G GL L     ++VF  L+W+  
Sbjct: 572 RHVRIDGSTPSSLRNELATRFQTDETCRVALLSITAAGTGLTLHA-ATLVVFAELFWNPG 630

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +           R  + G + AV V YLI +NT+DE + +++  K  +    +
Sbjct: 631 QLL-----QAEDRAHRVGQQCAVDVKYLICRNTLDESMWEKVERKMAVVGRAV 678


>gi|330870418|gb|EGH05127.1| SNF2-related:helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 101

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +     ++ G G NL    N + F  L W               R  + G  R 
Sbjct: 1   QDPDCRVFIGTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRV 54

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           V V   +A++TID+ + Q L  K  +   L++   +E
Sbjct: 55  VVVKIPLAEDTIDQQLWQMLMDKRALASDLIDPDAEE 91


>gi|221091560|ref|XP_002158128.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 590

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 14/118 (11%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWW 139
                       ++ K    +  +N+          +S   G  L   G N LV F   W
Sbjct: 390 RGYQYVRLDGSMSIKKRMKVVDRFNDPNSNDFLFMLSSKAGGCGLNLIGANRLVMFDPDW 449

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +        +   + R  + G K+           TI+E +LQR   K  +   +++ 
Sbjct: 450 NPAN-----DDQAMARVWRDGQKKET--------GTIEEKILQRQTHKKALSSCVVDE 494


>gi|238853530|ref|ZP_04643903.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|238833851|gb|EEQ26115.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 504

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK 96
           + +   +KI+ +  I      N+  +IV   F + +                    + ++
Sbjct: 305 FIDEDSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLNKKLPFLADDIISGDLSSNQ 364

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++       +L     + G GLN+Q   N ++     W         E   ++R
Sbjct: 365 RQEVIDKFSENPNQNVLLVQIDAGGFGLNIQA-ANRVILCEPQWKPST-----ENQAISR 418

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 419 AYRMGQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 455


>gi|167629278|ref|YP_001679777.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592018|gb|ABZ83766.1| snf2 family helicase, putative [Heliobacterium modesticaldum Ice1]
          Length = 581

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 19/157 (12%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTI 101
           H  K  AL  ++   N   +IV   F+     L +              G    +    +
Sbjct: 368 HRAKADALVQLLRGLND-KVIVFTGFSETHRYLVRRLTEAGFAVAQLHGGMKRLEKEEQV 426

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +      +L     +   G NLQ+    LV + L W+  + +Q I RI      + G 
Sbjct: 427 RYF-ADVAQVLL-STETGSEGRNLQF-CRCLVNYDLPWNPMQIEQRIGRI-----HRIGQ 478

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +R V++Y L AQ+T++  +L+ L  K  +  L++  L
Sbjct: 479 ERDVYIYNLSAQDTLEAHMLELLDAKINMFQLVVGEL 515


>gi|311269513|ref|XP_003132519.1| PREDICTED: helicase-like transcription factor-like [Sus scrofa]
          Length = 125

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 92  RTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K   +IQ +     G   ++     + G GLNL    + +      W+     Q  
Sbjct: 1   MAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNL-SAASRVFLMDPAWNPAAEDQCF 59

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +R       + G K+ V +   I +++++E +L+   TK  +        K
Sbjct: 60  DRC-----HRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKK 105


>gi|297812227|ref|XP_002873997.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297319834|gb|EFH50256.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1260

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EKI      I        +    F     R          L +   
Sbjct: 1064 VMFVLNLVYRVVKREKILIFCHNIAPIRMFTELFENVFRWQRGREILTLTGDLELFERGR 1123

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++ E      +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1124 VIDKFEEPGNPSRVLLASITACAEGISLTA-ASRVIMLDSEWNPSKT-----KQAIARAF 1177

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+++ T++E   +R   K  +  ++ + 
Sbjct: 1178 RPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSE 1217


>gi|115387833|ref|XP_001211422.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114195506|gb|EAU37206.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 914

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 53  DEKIKALE-VIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCT 100
             KI  L   + +  +    I+   +   L  ++K                    +    
Sbjct: 763 SSKINMLVSDVQDSLDTTKSIIFSCWTRTLDLVEKHLRMADILFLRIDGKTPPQVRQERL 822

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +      + +L     + G GLNLQ   N +      W+       +E   + R  + G
Sbjct: 823 DKFNTTSTVAVLIMTTGTGGVGLNLQSV-NRVFIVEPQWNPS-----VETQAIARAIRLG 876

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            ++ V V     Q +I+E +  +   K ++  +
Sbjct: 877 QEQTVSVIRYYVQGSIEEDMCSQQTRKLSLSKM 909


>gi|212529810|ref|XP_002145062.1| helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074460|gb|EEA28547.1| helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 987

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTI 101
             +    +  + +  N    I+   +   L  + K                   +    +
Sbjct: 806 SSKMTMLVSDVQKALNTTKSIIFSCWTRTLDLIGKHLSSANIEYARIDGKTPLSQRQKIL 865

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             +     IP+L     +   GLNL    N +      W+       +E   + R  + G
Sbjct: 866 DSFDRTRNIPILIMTTGTGALGLNL-KSVNRVFIIEPQWNPA-----VESQAIARAIRLG 919

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               V V     + +I+E + ++   K  I  +     +K+ + +
Sbjct: 920 QTEQVLVIRYHVKGSIEENMCEQQTQKLKISKM---DFRKDFLTI 961


>gi|169608872|ref|XP_001797855.1| hypothetical protein SNOG_07521 [Phaeosphaeria nodorum SN15]
 gi|111063867|gb|EAT84987.1| hypothetical protein SNOG_07521 [Phaeosphaeria nodorum SN15]
          Length = 220

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 6/150 (4%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPL 111
            +K      I+       + +A H     +             K    +  +     + +
Sbjct: 31  KKKDALDVHIVFSFWKTTLDIAAHMFDTASLRYSRIHGQIPASKRSKILSSFESSNDVRI 90

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L     +   GLN     N +      W+     Q I RI      + G +++V +   I
Sbjct: 91  LLITLGTGAVGLNKLKVANHIHILEPQWNPSVESQAIGRI-----LRMGQEKSVRITRYI 145

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            + T+++ V  R   K  +       +K E
Sbjct: 146 MKGTVEKAVQSRQLRKLQLASGGFGFVKDE 175


>gi|66357602|ref|XP_625979.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
 gi|46227244|gb|EAK88194.1| HARP like SWI/SNF ATpase [Cryptosporidium parvum Iowa II]
          Length = 908

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           Y DE+      H   + A+E ++ K           F        +   +     ++   
Sbjct: 746 YNDEKYVIFGHHHVMLDAIESVLLKKRKTACNSGGPF-----LFIRIDGKTPGNKREEYV 800

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +      +CG GLNL   G  ++F  L+W      Q  +R          
Sbjct: 801 KEFQNNENCKVALLSITACGQGLNLTSAGT-VIFAELYWVPGTMLQAEDRCHRI----GT 855

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + ++YLIA+ T+D+ +   L  K  I    L+ + +    +
Sbjct: 856 QYSCINIHYLIAEETLDDKMWGTLCRKQKIMASTLDGIDQRKNDI 900


>gi|146081173|ref|XP_001464187.1| j-binding protein [Leishmania infantum JPCM5]
 gi|134068278|emb|CAM66564.1| putative j-binding protein [Leishmania infantum JPCM5]
          Length = 1022

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +I      +  ++     +          +     +     +      + +L       
Sbjct: 836 LIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIA 895

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GL+     N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ 
Sbjct: 896 AYGLDFTA-ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKF 948

Query: 180 VLQRLRTKSTIQDLLLNA 197
           VL+    K  +   +L+ 
Sbjct: 949 VLRSQTRKIALFKCILHE 966


>gi|255954695|ref|XP_002568100.1| Pc21g10680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589811|emb|CAP95965.1| Pc21g10680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 943

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 27  SKTVKCLQLANGAVY-YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
           +K      L +  V   +E K    V   K   L  ++ +       V     S      
Sbjct: 738 AKITAVRGLVSDWVKEDEEVKIVIFVQFLKTVQLLQLMCEKEGWKYAVITGKVS------ 791

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   + +D    Q   E  I ++ +   + G GLNL    N  +    WW+     
Sbjct: 792 -------PISRDKQIEQFSKEKDIKVMISSLRTGGVGLNLT-MANKCILMDPWWN----- 838

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKK 200
           + I+     R  + G  R V    ++A+ +ID  +++  + K+   D L    ALK+
Sbjct: 839 EAIQNQAYCRLYRIGQPRPVEYVQVVAKVSIDSWMMRLQKEKTRNIDRLFSKEALKE 895


>gi|322497591|emb|CBZ32664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1022

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +I      +  ++     +          +     +     +      + +L       
Sbjct: 836 LIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIA 895

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GL+     N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ 
Sbjct: 896 AYGLDFTA-ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKF 948

Query: 180 VLQRLRTKSTIQDLLLNA 197
           VL+    K  +   +L+ 
Sbjct: 949 VLRSQTRKIALFKCILHE 966


>gi|124513598|ref|XP_001350155.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23615572|emb|CAD52564.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 1446

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L     + G GLNL    + +    LWW+       IE     R  + G  + V +Y 
Sbjct: 1333 KVLLCSLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERVHRIGQLKEVNIYK 1386

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL 195
             + + T++E +LQ  ++K    + +L
Sbjct: 1387 FVLEKTVEERILQIHQSKQYTANQIL 1412


>gi|169611232|ref|XP_001799034.1| hypothetical protein SNOG_08724 [Phaeosphaeria nodorum SN15]
 gi|111062772|gb|EAT83892.1| hypothetical protein SNOG_08724 [Phaeosphaeria nodorum SN15]
          Length = 1369

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 17/151 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNE 106
             +   +++     II+   F + +  L K                    +D       + 
Sbjct: 1171 QILNWMKEDPKVKIIIYTQFLAMVKILGKICSHEGWEAEQYVGTMSFGARDKAINTFASN 1230

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             K  +L A     G GLNL    + ++    WW+    Q         R  + G K   F
Sbjct: 1231 DKCNILLASLRCGGLGLNLT-MASRVIMVDPWWNEASEQ-----QAFCRVFRIGQKEETF 1284

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  L  +NT+D  +++    K+     ++  
Sbjct: 1285 MSRLCVKNTVDSKLIEMQERKTKEIGEIMED 1315


>gi|239977350|sp|Q4QFY1|JBP2_LEIMA RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
          Length = 1098

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
             +  ++     +          +     +     +      + +L        +GL+   
Sbjct: 920  GSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTA 979

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ VL+    K
Sbjct: 980  -ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKFVLRSQTRK 1032

Query: 188  STIQDLLLNA 197
              +   +L+ 
Sbjct: 1033 IALFKCILHE 1042


>gi|226225594|ref|YP_002759700.1| helicase [Gemmatimonas aurantiaca T-27]
 gi|226088785|dbj|BAH37230.1| helicase [Gemmatimonas aurantiaca T-27]
          Length = 1150

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 39/229 (17%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----HDEKIKALE 60
            +    +  DL G         +   +        V                  ++  L 
Sbjct: 776 EEIMGRIRADL-GSTAGRRQPLAALQRLHLCTQHPVLAGAATGHDVDALIATSARLAQLL 834

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD--------------------KDP 98
            ++ +    +  +++          L +   Q                         +  
Sbjct: 835 KLLREIQVQSEKVLIFARSVDSQRLLARVIAQSLGTQVDIVNGQTGVTGGRATSGTVRRE 894

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +         +   P   G GL L    N +V +  WW+       IE     R  +
Sbjct: 895 ILSRFRATPGFAAIVLSPFVAGVGLTLTE-ANHVVHYGRWWNPA-----IENQATDRAHR 948

Query: 159 AGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G  + V VYYL+       Q + DE +   LR +  +    L+ + ++
Sbjct: 949 IGQTKPVHVYYLLGTYRAPEQRSFDEALDDLLRERRDLAHDFLSPVTED 997


>gi|116195246|ref|XP_001223435.1| hypothetical protein CHGG_04221 [Chaetomium globosum CBS 148.51]
 gi|88180134|gb|EAQ87602.1| hypothetical protein CHGG_04221 [Chaetomium globosum CBS 148.51]
          Length = 450

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---LQKAFPQGRTLDKDP 98
            D+       H  K+ AL   ++K         +  +  L R          G  + +  
Sbjct: 285 DDDHYFSAGGHSTKMLALVEDVKKDLMTTKRTLHLLSKHLDRANIPYLRIDGGCPVPQRQ 344

Query: 99  CTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++    +  +L     + G GLNL    N +    L W+       +E   + R  
Sbjct: 345 AKLDQFSESDEKRVLVMTTGTGGFGLNLT-CANRVFIIELQWNPG-----VESQAIARAV 398

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-------LLLNALKK 200
           + G +  V+V   + ++T++E +  + R K  +          +++  ++
Sbjct: 399 RLGQENEVYVTRYVIRDTVEEEMRSQQRWKMQVAALGFEEAPDVIDDEER 448


>gi|325115083|emb|CBZ50639.1| aar147wp, related [Neospora caninum Liverpool]
          Length = 1866

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            D   +Q    G+  +L     +   GLNL    +       WW+ +     +E   + R 
Sbjct: 1617 DGRALQRQPGGEGRILLCSLKAGNVGLNLTR-ASRCYLMDGWWNPQ-----VENQAMKRI 1670

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V V   +   T++E + +    K  +   +
Sbjct: 1671 WRFGQDKPVKVVRFVCVRTVEERLEEIKEFKGWMARGV 1708


>gi|120554237|ref|YP_958588.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324086|gb|ABM18401.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 1046

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 18/203 (8%)

Query: 9   RELYCDLQGENI---EAFNSASKTVKCLQLANGAVYYDEE-KHWKEVHDEKIKALEVIIE 64
            EL  +L GE     E   S  + VK L L   ++   E  K     +++ I  L+    
Sbjct: 479 DELLYELDGETEGDNEPPASMGELVKTLALVGKSIGSYESLKASDTKYNQLISVLKDYWA 538

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG-------RTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +     II+   +   L  L +   +                 I+++       +     
Sbjct: 539 QYPDKKIILFAFYKGTLRYLHERLSEEGIGSLVLHGGMDKNEVIRQFRGDAQYNILLSSE 598

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQNTI 176
               G++LQ+  ++L+ + L W+    +Q I RI      + G +   + ++ +I ++TI
Sbjct: 599 VAAEGVDLQF-SSVLINYDLPWNPMRIEQRIGRID-----RIGQEEDRIHIWNMIYEDTI 652

Query: 177 DELVLQRLRTKSTIQDLLLNALK 199
           D+ V  RL  +  I    + +++
Sbjct: 653 DQRVYDRLLDRLDIFRNAMGSME 675


>gi|90078875|dbj|BAE89117.1| unnamed protein product [Macaca fascicularis]
          Length = 500

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G+NL    ++++ +   W+ +     ++   + R  + G K+ V V+ LI 
Sbjct: 1   MLSTRAGGLGINL-ASADVVILYDSDWNPQ-----VDLQAMDRAHRIGQKKPVRVFRLIT 54

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALK 199
            NT++E +++R   K  +  +++   +
Sbjct: 55  DNTVEERIVERAEIKLRLDSIVIQQGR 81


>gi|49387874|dbj|BAD26561.1| SNF2 domain-containing protein-like [Oryza sativa Japonica Group]
          Length = 602

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               ++ +N+ K    ++ A   +C  G+ L  G + +V   + W+       + R  + 
Sbjct: 466 REALMEAFNDMKSNAKVMLASTKACCEGITL-IGASRVVLLDVVWNPS-----VGRQAIG 519

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G ++ V+ Y LI + T ++    R   K  +  LL +
Sbjct: 520 RAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFS 561


>gi|138896002|ref|YP_001126455.1| Snf2/Rad54 family helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134267515|gb|ABO67710.1| Helicase, Snf2/Rad54 family [Geobacillus thermodenitrificans
           NG80-2]
          Length = 554

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +  A   + G 
Sbjct: 369 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQELFKN-HAQVFIAT-EAGGE 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V +Y    + T++E +L
Sbjct: 427 GINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDDVHIYNFAVKQTVEEHIL 480

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 481 TLLYEKIRLFERVVGEL 497


>gi|240274020|gb|EER37538.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H143]
          Length = 1762

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1353 RSYSRLDGKTPIATRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1411

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1412 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD--KKN 1464

Query: 202  TIH 204
             I 
Sbjct: 1465 PIR 1467


>gi|147789690|emb|CAN74059.1| hypothetical protein VITISV_024679 [Vitis vinifera]
          Length = 2238

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 58/222 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1286 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLD 1345

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N       +      + G GLNLQ   +
Sbjct: 1346 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQS-AD 1404

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----------------- 173
             +V +    + +      E   V R  + G  R V V Y+ A                  
Sbjct: 1405 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGG 1459

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                            +I+ L+     + K  + D ++NA +
Sbjct: 1460 TVDSEDDLAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGR 1501


>gi|322489605|emb|CBZ24862.1| putative j-binding protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1022

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +I      +  ++     +          +     +     +      + +L       
Sbjct: 836 LIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIA 895

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            +GL+     N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ 
Sbjct: 896 AYGLDFTA-ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKF 948

Query: 180 VLQRLRTKSTIQDLLLNA 197
           VL+    K  +   +L+ 
Sbjct: 949 VLRSQTRKIALFKCILHE 966


>gi|116629551|ref|YP_814723.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095133|gb|ABJ60285.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
          Length = 917

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDK 96
           + +   +KI+ +  I      N+  +IV   F + + +L K               + ++
Sbjct: 718 FIDEDSQKIEQIINICVDSHENSEKVIVFSFFKNYVLKLLKKKLPFLADDIISGDLSSNQ 777

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I ++       +L     + G GLN+Q   N ++     W         E   ++R
Sbjct: 778 RQEVIDKFSENPNQNVLLVQIDAGGFGLNIQA-ANRVILCEPQWKPST-----ENQAISR 831

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  R V VY L+ + ++DE +++ +  K  I +
Sbjct: 832 AYRMGQNRNVMVYRLLTKESVDETMMEIIHEKEDIFN 868


>gi|311270523|ref|XP_001927177.2| PREDICTED: e1A-binding protein p400 [Sus scrofa]
          Length = 2866

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            +  Q+         E    +    K++AL V+++K  +    +++       L  L+   
Sbjct: 1827 QLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFL 1886

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I        S   G++L    + +VF+  
Sbjct: 1887 NFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSL-VEADAVVFYDN 1945

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +      +++        + G +R V +Y L++ N+I+E +L+
Sbjct: 1946 DLNP-----VMDAKAQEWCDRIGRRRDVHIYRLVSGNSIEEKLLK 1985


>gi|296213297|ref|XP_002807207.1| PREDICTED: LOW QUALITY PROTEIN: E1A-binding protein p400-like
            [Callithrix jacchus]
          Length = 3069

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 67/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q A   +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1789 HAAPYFQQLRQTATPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLML 1848

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1849 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRATGINL-VEAD 1907

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+++E +L+
Sbjct: 1908 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSVEEKLLK 1954


>gi|311270518|ref|XP_003132906.1| PREDICTED: e1A-binding protein p400-like [Sus scrofa]
          Length = 2832

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            +  Q+         E    +    K++AL V+++K  +    +++       L  L+   
Sbjct: 1827 QLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFL 1886

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N + +I        S   G++L    + +VF+  
Sbjct: 1887 NFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSL-VEADAVVFYDN 1945

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +      +++        + G +R V +Y L++ N+I+E +L+
Sbjct: 1946 DLNP-----VMDAKAQEWCDRIGRRRDVHIYRLVSGNSIEEKLLK 1985


>gi|189201379|ref|XP_001937026.1| hypothetical protein PTRG_06693 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984125|gb|EDU49613.1| hypothetical protein PTRG_06693 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 909

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 16/142 (11%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKD 97
                 + +   E I    N +  IV   +   L                       +K 
Sbjct: 760 HTVFPSKIMTLYEDIQAHCNDSKSIVFSFWKRSLDMVAALLTVNNVSFVRVDGSVPFNKR 819

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++     I +L     +   GLN     N +   +  W+       +E   + R 
Sbjct: 820 KAILNDFKCRNDISVLLMTFGTGAVGLNSLSIANRVHILAPQWNPS-----VEHQAIGRV 874

Query: 157 RQAGFKRAVFVYYLIAQNTIDE 178
            + G +  V +   I   T++E
Sbjct: 875 VRLGQQNPVTIVRYIVDKTVEE 896


>gi|196248895|ref|ZP_03147595.1| helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211771|gb|EDY06530.1| helicase domain protein [Geobacillus sp. G11MC16]
          Length = 556

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + +      +  A   + G 
Sbjct: 371 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQELFKN-HAQVFIAT-EAGGE 428

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V +Y    + T++E +L
Sbjct: 429 GINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDDVHIYNFAVKQTVEEHIL 482

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 483 TLLYEKIRLFERVVGEL 499


>gi|225557866|gb|EEH06151.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1790

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1380 RSYSRLDGKTPIATRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1438

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1439 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD--KKN 1491

Query: 202  TIH 204
             I 
Sbjct: 1492 PIR 1494


>gi|19074332|ref|NP_585838.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
 gi|19068974|emb|CAD25442.1| BELONGS TO THE SNF2/RAD54 HELICASE FAMILY [Encephalitozoon cuniculi
           GB-M1]
          Length = 556

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----------TIQEWNEGKIPLL 112
                   +V  H    +  L+  F +                      +     ++ + 
Sbjct: 390 MVEKGMKFVVFCHHTEMMESLEGFFAERNVPMIRIDGSVPSTSRHLLVKKFQENEEVMVA 449

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +C  GL L   G  +VF  L+W+     Q  +RI      + G K +V + YL+A
Sbjct: 450 LLSITACSTGLTLTA-GRAVVFAELYWNPGVLLQAEDRI-----HRIGQKSSVDIIYLVA 503

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           + TIDE V  +L +K  + + L
Sbjct: 504 KGTIDEYVWPKLLSKLNVLESL 525


>gi|123467717|ref|XP_001317270.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900000|gb|EAY05047.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 904

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ---------G 91
              EEK    +H    +    I+   N   I+   H    L  + +             G
Sbjct: 737 LTSEEKVEPVLHWMTSQKFRDILFCQN-RKILFFAHHTVMLKGISEWLTFRNIDHILING 795

Query: 92  RTLDKDPCTI--QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            T  K+   +  +  +E +  +      +   G+ L    +++VF  L +    H     
Sbjct: 796 ETSMKNRKILLDKFKSEPECKIAVLGIETISAGVTL-VEASVVVFAELMYVPATHL---- 850

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                R  + G  + V +YYL A  ++D+ V + L  K  +   ++ +
Sbjct: 851 -QAEDRVHRIGQTQPVDIYYLHAPGSVDDRVWEILERKLEVLGSVITS 897


>gi|290988684|ref|XP_002677026.1| predicted protein [Naegleria gruberi]
 gi|284090631|gb|EFC44282.1| predicted protein [Naegleria gruberi]
          Length = 822

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEKA 66
            E   +   E++   +  +   K +Q  +        +     +     +   +  +   
Sbjct: 569 EEFSQEYNDEDVTPESFQTTLKKYIQ-ESHPKLTGSTRVKILKNLVSRIVGGKKEKVVVF 627

Query: 67  NAAPIIVAYHFNS---DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
           +      +        D       F    +  K    I ++N G I  L     + G G+
Sbjct: 628 SGLVCYNSVIVKELSKDNTIKIGVFTGDTSSPKRAEIINQFNRGIINTLLISKNAGGVGI 687

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           +L      +V F+L ++  +     +   + R  +   K  V ++ L+ + ++D  V + 
Sbjct: 688 DLTT-ATNVVLFNLDFNFAK-----DDQAICRLVRKNQKEQVKIFRLVCRESVDVAVKEL 741

Query: 184 LRTKSTIQDLLLNAL 198
              K+ I D LL+ +
Sbjct: 742 QAHKTVIFDKLLDDI 756


>gi|68075977|ref|XP_679908.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500750|emb|CAH98546.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 528

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 7/130 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            K    +  I   +                +           +    I+E+     + + 
Sbjct: 405 NKPDDDDAYIRSPSVMSTSSQLSEKKFQNNIYVRLDGSTNTIERQQIIKEFSENDNVFIF 464

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G GLNL    N ++     W+        +R    R  + G K+ V++Y L  
Sbjct: 465 LLSTKAGGVGLNL-IAANHVILMDQDWNP-----HNDRQAEDRVHRLGQKKEVYIYRLCC 518

Query: 173 QNTIDELVLQ 182
           +NTI+E VL+
Sbjct: 519 KNTIEETVLK 528


>gi|237840979|ref|XP_002369787.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|211967451|gb|EEB02647.1| DNA repair protein, putative [Toxoplasma gondii ME49]
 gi|221483703|gb|EEE22015.1| DNA repair protein, putative [Toxoplasma gondii GT1]
          Length = 1733

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNEGKIPLLFAHPASC 119
                           DL   +     G    K          ++ ++ +  +L     + 
Sbjct: 1475 NHENCGGGPFAGIFQDLRDSKGDRDTGLVATKREIGNGCTLRRQRDDEEGRILLCSLKAG 1534

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
              GLNL    +       WW+ +     +E   + R  + G  + V V   +   T++E 
Sbjct: 1535 NVGLNLTR-ASRCYLMDGWWNPQ-----VENQAMKRIWRFGQDKPVKVVRFVCVRTVEER 1588

Query: 180  VLQRLRTKSTIQDLL 194
            + +    K  +   +
Sbjct: 1589 LEEIKEFKGWMARGV 1603


>gi|154270291|ref|XP_001536001.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410015|gb|EDN05403.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1687

 Score = 65.2 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1289 RSYSRLDGKTPIATRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1347

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1348 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD--KKN 1400

Query: 202  TIH 204
             I 
Sbjct: 1401 PIR 1403


>gi|302764876|ref|XP_002965859.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
 gi|300166673|gb|EFJ33279.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
          Length = 429

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 32/197 (16%)

Query: 26  ASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN 78
            ++  +  +          V   E +        K   +  ++   +     +I+   + 
Sbjct: 180 LAEDSRLARACVHPCFAVDVESPELEQQDPKAGAKTAFVMELLRFLRNKPEKLIIFGQYR 239

Query: 79  SDLARLQKAFPQ---------------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGH 121
             L  L+    +                   ++       +N       ++     +CG 
Sbjct: 240 QPLELLKNMIMERLGWRELHEVLYMSGETATNERVRISSTFNSKSSTARVILVSIKACGE 299

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV- 180
           G++L  GG+ +V     W+         R  V+R  + G K+ V+VY L+  NT++  V 
Sbjct: 300 GISL-VGGSRVVVLDTAWNPSTV-----RQAVSRAFRIGQKKKVYVYRLLVGNTLEHEVE 353

Query: 181 -LQRLRTKSTIQDLLLN 196
            L+R   K  +   L +
Sbjct: 354 KLRRSMRKDFLAMALFH 370


>gi|42780097|ref|NP_977344.1| SNF2 family helicase [Bacillus cereus ATCC 10987]
 gi|4584117|emb|CAB40614.1| SNF2-like helicase [Bacillus cereus ATCC 10987]
 gi|42736015|gb|AAS39952.1| helicase, SNF2 family [Bacillus cereus ATCC 10987]
          Length = 631

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 24/171 (14%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDP 98
           +   K +    +I         +IV   F   + ++++   Q          G   D+  
Sbjct: 449 IPSAKFEKGIQLIMDLVGKGKKVIVWGMFVKTMQKIKQVLQQKGVSVNLVYGGTPKDERV 508

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I ++ +G++ ++ ++P + G  ++L    +  ++F   ++L    Q  +RI     + 
Sbjct: 509 KLINDFRDGEVEVMISNPNTLGESISLHQTVHDAIYFEYNFNLTFMLQSRDRIHRLGLKD 568

Query: 159 AGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             + R    YYL+ +        ID+ + +RL+ K  +    L+A+  E +
Sbjct: 569 DQYTR---YYYLMTEGDRAHGGFIDQAIYKRLKEKEQVM---LDAIDGELL 613


>gi|325095597|gb|EGC48907.1| SNF2 family helicase/ATPase [Ajellomyces capsulatus H88]
          Length = 1787

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N G    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1380 RSYSRLDGKTPIATRQIATKNFNSGFDSQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1438

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1439 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDVMHNRAVFKTQLAFRVVD--KKN 1491

Query: 202  TIH 204
             I 
Sbjct: 1492 PIR 1494


>gi|198411801|ref|XP_002126705.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
          Length = 158

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            F   W+        +   + R  + G K+  F+Y L+   TI+E + QR   K  +   
Sbjct: 1   MFDPDWNPAN-----DEQAMARVWRDGQKKPCFIYRLLGTGTIEEKIFQRQAHKKALSSC 55

Query: 194 LLN 196
           +++
Sbjct: 56  VVD 58


>gi|90420968|ref|ZP_01228872.1| putative helicase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334746|gb|EAS48522.1| putative helicase [Aurantimonas manganoxydans SI85-9A1]
          Length = 543

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 2   KQYHKFQ----RELYCDLQGENIEAFNSASK-TVKCLQLAN------------GAVYYDE 44
           + Y   +    RE    L  +  + F +  +   + LQ  +                   
Sbjct: 277 ELYELMRLEVAREASALLDIQGRQTFRALGRSVSRLLQFVSNPSLLAAQIGFAHHDLLAA 336

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL---------------QKAFP 89
                E    +               +++   F  ++  +                 A  
Sbjct: 337 VLAEGEGPKLQYVLKRARQLSREGHKVLIWSSFVRNVEYMASRLADLGAVYIHGGVDAGD 396

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           +     ++       ++  + ++ A+PA+   G++L    +  ++    ++   + Q  +
Sbjct: 397 EDDADTREGKIKAFHDDENVRVMVANPAAASEGISLHRVCHHAIYLDRTFNAAHYLQSED 456

Query: 150 RIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLN--ALKKETIHV 205
           RI      +        +  ++    T+DE V  RL  K       LN  +L  + I +
Sbjct: 457 RIHRFGLPRDQK----TIIEIVECTRTVDETVRSRLGFKIGEMARALNDSSLAPDPIQI 511


>gi|327351004|gb|EGE79861.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1775

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N +    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1384 RTYSRLDGKTPVATRQVATKNFNSDSNTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1442

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1443 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDIMHNRAVFKTQLAFRVVD--KKN 1495

Query: 202  TIH 204
             I 
Sbjct: 1496 PIR 1498


>gi|261198491|ref|XP_002625647.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239594799|gb|EEQ77380.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239610080|gb|EEQ87067.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1776

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R          +       + +N +    +      + G GLN+  G N ++ F   ++ 
Sbjct: 1385 RTYSRLDGKTPVATRQVATKNFNSDSNTQVYLISTRAGGLGLNI-PGANRVIIFDFQFNP 1443

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                   E   V R  + G  + V+VY  +A  T ++++  R   K+ +   +++  KK 
Sbjct: 1444 T-----WEEQAVGRAYRLGQLKPVYVYRFLAGGTYEDIMHNRAVFKTQLAFRVVD--KKN 1496

Query: 202  TIH 204
             I 
Sbjct: 1497 PIR 1499


>gi|167525194|ref|XP_001746932.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774712|gb|EDQ88339.1| predicted protein [Monosiga brevicollis MX1]
          Length = 712

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 7/146 (4%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-I 109
           + D      +++I   +   +     F                          + +    
Sbjct: 411 LEDLMNHDGKLLIFAHHKTLLDELATFLCQRQLRHIRIDGSTPTHLRQQLCNSFQDDVLC 470

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G GL L    N +VF  L+W+              R  + G +  V V Y
Sbjct: 471 RVAVLSITTAGTGLTLHA-ANTVVFAELYWNPGHLY-----QAEDRAHRVGQRHNVNVRY 524

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
           L+   T+D+++  +L+ K+ I    +
Sbjct: 525 LLCPGTLDDVMWSQLQRKAKIVQRAM 550


>gi|56420961|ref|YP_148279.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380803|dbj|BAD76711.1| DNA/RNA helicase (SNF2 family) [Geobacillus kaustophilus HTA426]
          Length = 554

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + + +    +  A   + G 
Sbjct: 369 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQELF-KHHAQVFIAT-EAGGE 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    + T++E +L
Sbjct: 427 GINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDDVYIYNFAVKQTVEEHIL 480

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 481 TLLYEKIRLFERVVGEL 497


>gi|269793095|ref|YP_003317999.1| helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100730|gb|ACZ19717.1| helicase domain protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 969

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +   F ++             L++       +    + +L     + G GLNLQ+  +++
Sbjct: 512 MLMRFLTERGITVVCLNGSMDLEERKRVQDAF-AKDVRILI-STDAGGEGLNLQF-CHVV 568

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + + + W+    +Q I R+      + G    V     + +++++  V + L  K  + 
Sbjct: 569 INYDIPWNPMRLEQRIGRVD-----RIGQTHTVRAINFVFEDSVEHRVREVLEEKLAVI 622


>gi|242769688|ref|XP_002341821.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218725017|gb|EED24434.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1975

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 72/197 (36%), Gaps = 16/197 (8%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            ++++  +  + +   +  S+  K +     A         +E+H E     ++II   N 
Sbjct: 1635 KKIFLKVLSKKLSPDSPLSQ-TKLI-ATTSAKLTYLLDRVQELHKE----EKIIIFYENN 1688

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQY 127
                        L    + +       +    +  + E   + +L        HGL++  
Sbjct: 1689 NTAFWIAEGLEMLGIDFRIYANTLKTSQKAAYLSLFEESSSVRVLLMDLRQASHGLHI-A 1747

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + +   +  W  +     +E   + R  + G  R VFV  L+ ++T++E +L R   +
Sbjct: 1748 SASRVFIVNPIWRPQ-----VESQAIKRAHRIGQTRPVFVETLVLKDTLEEKMLHR---R 1799

Query: 188  STIQDLLLNALKKETIH 204
              + +  +   +K+ + 
Sbjct: 1800 QEMSNSEMQHAEKDMLD 1816


>gi|114596227|ref|XP_001144339.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a5 isoform 2 [Pan troglodytes]
          Length = 955

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               ++++ +   W+ +     ++   + R  + G  + V V+  I  NT++E +++R  
Sbjct: 471 LATADVVILYDSDWNPQ-----VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 525

Query: 186 TKSTIQDLLLNALK 199
            K  +  +++   +
Sbjct: 526 MKLRLDSIVIQQGR 539


>gi|297852448|ref|XP_002894105.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339947|gb|EFH70364.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 673

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTI 101
            KI A+   +          +V  H  S L  + +                        +
Sbjct: 468 AKIPAVLDYLGTVLEAGCKFLVFAHHQSMLDAIHQFLKKKKVGCIRIDGSTPASSRQALV 527

Query: 102 QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            ++ +  +I        + G G+ L    + ++F  L W   +           R  + G
Sbjct: 528 SDFQDKDEIKAAVLSIRAAGVGITLTA-ASTVIFAELAWTPGDLI-----QAEDRAHRIG 581

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 582 QVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 618


>gi|225454280|ref|XP_002276245.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2268

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 58/222 (26%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
            ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 1316 MELRKACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLD 1375

Query: 83   RLQKAFPQGRTLDKD----------PCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGN 130
             L++     R + +              I ++N       +      + G GLNLQ   +
Sbjct: 1376 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQS-AD 1434

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ----------------- 173
             +V +    + +      E   V R  + G  R V V Y+ A                  
Sbjct: 1435 TVVIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGG 1489

Query: 174  ---------------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                            +I+ L+     + K  + D ++NA +
Sbjct: 1490 TVDSEDDLAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGR 1531


>gi|193084170|gb|ACF09835.1| helicase SNF2/RAD54 family [uncultured marine crenarchaeote
           AD1000-207-H3]
          Length = 569

 Score = 65.2 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G++       I  +  G   LL A   +   G+NL      ++F  L W        + R
Sbjct: 444 GQSDKVRQKNIDYFQNGDTKLLIAGLRAGNLGINLTR-AKYVIFAELDWVPA-----VHR 497

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G K  VF YYLI + T+DE V   L  KS   D +++ 
Sbjct: 498 QAEDRLHRIGQKNTVFAYYLIGKRTLDEHVANILVDKSYEIDAIMDE 544


>gi|239610143|gb|EEQ87130.1| SNF2-family ATP dependent chromatin remodeling factor snf21
           [Ajellomyces dermatitidis ER-3]
          Length = 1385

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ +   W+  +     +     R  + G K  V +  LI  N+++E +L+  + K  + 
Sbjct: 898 VIIYDSDWNPHQ-----DLQAQDRAHRIGQKNEVRILRLITSNSVEERILEAAQFKLDMD 952

Query: 192 DLLLNALK 199
             ++ A K
Sbjct: 953 GKVIQAGK 960


>gi|157866423|ref|XP_001687603.1| j-binding protein [Leishmania major strain Friedlin]
 gi|68125217|emb|CAJ02566.1| putative j-binding protein [Leishmania major strain Friedlin]
          Length = 1022

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            +  ++     +          +     +     +      + +L        +GL+   
Sbjct: 844 GSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTA 903

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ VL+    K
Sbjct: 904 -ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKFVLRSQTRK 956

Query: 188 STIQDLLLNA 197
             +   +L+ 
Sbjct: 957 IALFKCILHE 966


>gi|156101331|ref|XP_001616359.1| helicase [Plasmodium vivax SaI-1]
 gi|148805233|gb|EDL46632.1| helicase, putative [Plasmodium vivax]
          Length = 877

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCG 120
           ++   +   +     F  +   +         ++K    I+   N+  + +      +CG
Sbjct: 636 LLFCHHKLVMDEIDDFLREKKTMFIRVDGLTPIEKREVYIKSFQNDDHVKIALLSLTACG 695

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV-FVYYLIAQNTIDEL 179
            GLNL    N +VF  L+W   +           R  + G    V  ++YLIAQNTIDE+
Sbjct: 696 IGLNLTA-ANTVVFGELYWVPGQII-----QAEDRAHRIGTTHEVVNIHYLIAQNTIDEI 749

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           V + +  K       LN ++ ++++V
Sbjct: 750 VWKIINRKWNTLTTALNGME-DSLNV 774


>gi|297529405|ref|YP_003670680.1| helicase [Geobacillus sp. C56-T3]
 gi|297252657|gb|ADI26103.1| helicase domain protein [Geobacillus sp. C56-T3]
          Length = 554

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + + +    +  A   + G 
Sbjct: 369 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQELF-KHHAQVFIAT-EAGGE 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    + T++E +L
Sbjct: 427 GINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDDVYIYNFAVKQTVEEHIL 480

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 481 TLLYEKIRLFERVVGEL 497


>gi|302325491|gb|ADL24692.1| SNF2/helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 749

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 36/221 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y + +RE       E   +  + ++ +K ++     +    EK  K   + +I  +  II
Sbjct: 397 YGEDEREG---FDDEATISVQTLAEPLKLMENEIDHINLLLEKATKVTSETRINRIVEII 453

Query: 64  EK-ANAAPIIVAYHFNSDLARL--------------------------QKAFPQGRTLDK 96
           ++      +++   +    + +                                      
Sbjct: 454 KEKYPNDQVLLFTEYKRTQSLMMTELMKVWGDNSVTIINGDESLKDVVYPDGCSRDISIS 513

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +++N G++        + G G++LQ   ++L+   L W+     Q + R+     
Sbjct: 514 RNDACEKFNNGEVR-FLISTEAAGEGIDLQKNCHVLIHIDLPWNPMRLHQRVGRV----- 567

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G    V V  +   + I+  +   L  K      +L+ 
Sbjct: 568 HRLGQTHDVEVVSVRNPDNIESKIWGYLEEKIDQIQKMLSE 608


>gi|224071798|ref|XP_002195016.1| PREDICTED: similar to E1A binding protein p400 [Taeniopygia guttata]
          Length = 2991

 Score = 64.8 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
              +  QL    +    +    +    K++AL V+++K  +    +++       L  L+ 
Sbjct: 1750 LHQLQQLTTPHLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMILMLDILEL 1809

Query: 87   AFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                              ++    ++ +N + +I        S   G+NL    + +VF+
Sbjct: 1810 FLNFHFLTFVRIDEYANQEQRQELMKIFNRDKRIFCAILSSHSRSTGVNL-VEADTVVFY 1868

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                +      +++        + G  + + +Y L++ N+++E +L+
Sbjct: 1869 DNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSVEEKLLK 1910


>gi|209881905|ref|XP_002142390.1| helicase  [Cryptosporidium muris RN66]
 gi|209557996|gb|EEA08041.1| helicase conserved C-terminal domain-containing protein
           [Cryptosporidium muris RN66]
          Length = 836

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           H E + A+E I+ K      +   +    +         G    ++    +  N     +
Sbjct: 685 HHEMLDAIETILVKRKRNKSLSEIN-KHFVYIRIDGKTPGNK--REEYVKEFQNNINCKV 741

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +CG GLNL   G  ++F  L+W      Q  +R              + ++YL+
Sbjct: 742 AVLSITACGQGLNLTSAGT-VIFAELYWVPGFMLQAEDRCHR----MGTQYSCINIHYLV 796

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNAL 198
           A+NT+D+ +   L  K  I    L+ +
Sbjct: 797 AENTLDDKMWGILYKKQKIMASTLDGI 823


>gi|159470465|ref|XP_001693380.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277638|gb|EDP03406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 594

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 5/158 (3%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           +     ++ K       +  E ++E  +    ++         +  +        D++  
Sbjct: 418 IMQLWRQNAKLKGAAVAEYCEDLLEGEDPPKFLLFGEGRKLRFKYIRIDGDTPGEDRNRL 477

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           T +   E  + +      + G GL      +++VF  L W   + QQ  +R     Q   
Sbjct: 478 TQKFQEEEDVKVALLSIKAAGVGLTFTR-SSLVVFSELSWIPGDIQQAEDRCHRIGQAAT 536

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V ++YL+ + ++DE++   L++K       L+ 
Sbjct: 537 S----VNIHYLLVRGSVDEIMWDCLQSKLGSVGKALDG 570


>gi|167524411|ref|XP_001746541.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774811|gb|EDQ88437.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1057

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLD 95
           +KE    KI A+   I          +V  +    L                      + 
Sbjct: 361 YKETGAAKIPAVREYIRGLCQTGDKFLVFAYHLDVLDAVHVEVVAAKLDYIMIRGDTPVS 420

Query: 96  KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++++       +      + G GL L    + ++F  L W        I      
Sbjct: 421 ERQAGVRKFQGNDSCRVAILSMTAAGQGLTLTA-ASTVIFAELHWTPG-----IIEQAED 474

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G    V V YL+A+ T+D+ +   +  K  +    L+  ++  
Sbjct: 475 RVHRIGQGDPVNVQYLVARRTLDDTMWNIVDRKVGVVSSALDGQRERL 522


>gi|268324801|emb|CBH38389.1| conserved hypothetical protein, ATP-dependent helicase related
           [uncultured archaeon]
          Length = 1120

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----------LARLQKAFP 89
           + + E    +E+  + +K  + I+       +++   F                      
Sbjct: 455 IGFAETVKAREIESKLVKLRDDILSNIGDMKLLIFTEFRDTVDYLVAKLTSWGYKVNTIH 514

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               +D        +   +  ++ A  A+   G+NLQ+  +++V + + W+    +Q + 
Sbjct: 515 GSMGMDARIEAEHRFKN-ETQIMVATEAAG-EGINLQF-CSLMVNYDIPWNPNRLEQRMG 571

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           RI      + G  + VF+Y +++++T +  +L RL  K       L + +
Sbjct: 572 RI-----HRYGQDKEVFIYNMVSKDTREGQILDRLFDKLAAMREALGSDR 616


>gi|254304002|ref|ZP_04971360.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324194|gb|EDK89444.1| SWF/SNF family helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 401

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 9/127 (7%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI---PLLFAHPASCGHGLNLQYG 128
           ++ Y+FN +   ++K       +      I ++++              + G G+ LQY 
Sbjct: 270 LIFYNFNREAREIKKIIKVDFEVSGAVSNIPKFDDYDTLKGKTTLVQIQAGGAGIELQYN 329

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++FFS  W  +++        + R  + G K  V VY  I + TI+E V  RL  K 
Sbjct: 330 -SEVIFFSPTWSFQDYS-----QALGRAYRIGQKNKVTVYKYIGKRTIEERVYARLDEKK 383

Query: 189 TIQDLLL 195
              + LL
Sbjct: 384 DFAEKLL 390


>gi|126011014|ref|YP_001039764.1| hypothetical protein BcepF1.080 [Burkholderia ambifaria phage
           BcepF1]
 gi|119712590|gb|ABL96811.1| unknown [Burkholderia ambifaria phage BcepF1]
          Length = 525

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 17/182 (9%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-----------NS 79
           K  Q+ +G +  + E    +  +     L     +      IV   +            S
Sbjct: 349 KMKQVVSGFINVEGEPVLIDPENNPRMKLFSEYMEGVDGQTIVWCLYEVEILQVAEKLRS 408

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              R+   + + +  +     I ++  G I  +  H A+ G GL L       +++S   
Sbjct: 409 MGRRVATYYGKTKKGETREKIIDDFQNGLIDDIVGHAAALGIGLTLTA-ATTSLYYSCDR 467

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + E   Q  +R       + G  ++      IA++TIDE  ++    K+ + +++++   
Sbjct: 468 NNELRLQSEDR-----NHRIGTVKSPVYVDFIAEDTIDEDDMRGRAFKTELANIVIDRTA 522

Query: 200 KE 201
           ++
Sbjct: 523 RK 524


>gi|304311832|ref|YP_003811430.1| hypothetical protein HDN1F_22020 [gamma proteobacterium HdN1]
 gi|301797565|emb|CBL45785.1| Hypothetical protein HDN1F_22020 [gamma proteobacterium HdN1]
          Length = 912

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              +    G         I  +N    P L    +  G G++L      ++   L W+  
Sbjct: 753 HPVRRAYGGTERHVRERLIALFNTPFAPELLVASSVMGEGIDLHQECRFVIHHDLDWNPS 812

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +Q   R+           R + VY      T DE + + ++ ++   D+++ 
Sbjct: 813 VLEQRTGRLDRIGALADRLGRNIEVYEPYLAGTHDEKMYKVVKDRAQWFDIVMG 866


>gi|293352708|ref|XP_002728046.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Rattus
           norvegicus]
          Length = 1069

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELFWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|261417712|ref|YP_003251394.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|319767479|ref|YP_004132980.1| helicase [Geobacillus sp. Y412MC52]
 gi|261374169|gb|ACX76912.1| SNF2-related protein [Geobacillus sp. Y412MC61]
 gi|317112345|gb|ADU94837.1| helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 554

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II     A  +    F          F  G    K     + + +    +  A   + G 
Sbjct: 369 IIFTEYRATQLYLQWFLKQHGISSVPFRGGFRRGKKDWMQELF-KHHAQVFIAT-EAGGE 426

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NLQ+    ++ + L W+    +Q I R+      + G    V++Y    + T++E +L
Sbjct: 427 GINLQF-CRYVINYDLPWNPMRLEQRIGRV-----HRLGQTDDVYIYNFAVKQTVEEHIL 480

Query: 182 QRLRTKSTIQDLLLNAL 198
             L  K  + + ++  L
Sbjct: 481 TLLYEKIRLFERVVGEL 497


>gi|293341309|ref|XP_002724934.1| PREDICTED: zinc finger, RAN-binding domain containing 3-like
           [Rattus norvegicus]
          Length = 1037

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELFWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|328700856|ref|XP_003241405.1| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon
           pisum]
          Length = 1155

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 97  DPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                + +N  +    +      +   G N+  G N ++  S  W+        +   + 
Sbjct: 796 RNQMCEAFNNPENTAKVFLLSMGTGVLGYNM-VGANRVLLLSTSWNPSN-----DLQAIY 849

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           R  + G ++ V+V  L+A+ T++     R  +K  +   +++
Sbjct: 850 RCLRFGQQKTVYVNRLLAKGTVEPKAYYRQISKLGMASSVVD 891


>gi|302687500|ref|XP_003033430.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
 gi|300107124|gb|EFI98527.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
          Length = 2254

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D  ++     +G    +     +  N  K  +L  +              N  +F S   
Sbjct: 2125 DYHKIPHLEIKGSASARSTALDKFQNGSKERVLLLNVRDESASGANLTCANHAIFLSPLH 2184

Query: 140  DLE-EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                +  Q  E   V R  + G ++ V ++  I  +TID  + ++       Q   +  +
Sbjct: 2185 APTKDLYQAWETQAVGRVVRYGQQKPVQIHRFITMDTIDSEIFEKQHADLAQQGKAIEDV 2244

Query: 199  KK 200
             +
Sbjct: 2245 TR 2246


>gi|320033549|gb|EFW15496.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 1107

 Score = 64.8 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++     +   +  I +L +   + G GL+L       +   LWW+    Q      
Sbjct: 972  PPSERHRDIEEFRTDPSIRVLISSLKAGGTGLSLT-MAEKCILIDLWWNEAMEQ-----Q 1025

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G K+ V +  +  +N+ID+ +      KS+  +  + 
Sbjct: 1026 AFCRLFRYGQKKEVEIVRITVKNSIDDRIQLIQNAKSSNIEKTMG 1070


>gi|71274979|ref|ZP_00651267.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71898395|ref|ZP_00680568.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
 gi|71164711|gb|EAO14425.1| hypothetical protein XfasaDRAFT_2287 [Xylella fastidiosa Dixon]
 gi|71731918|gb|EAO33976.1| hypothetical protein XfasoDRAFT_3433 [Xylella fastidiosa Ann-1]
          Length = 104

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 49/68 (72%)

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +  DLE +QQ++ERIG TRQ QAG KR VF+++++A  T+DELV+ R  +K  +QDL
Sbjct: 23  LCPVHGDLEHYQQIVERIGPTRQAQAGHKRPVFIHHIVAAGTVDELVMARRESKREVQDL 82

Query: 194 LLNALKKE 201
           LL A+K+ 
Sbjct: 83  LLEAVKRR 90


>gi|331284125|ref|NP_056224.3| E1A-binding protein p400 [Homo sapiens]
          Length = 3123

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|317373565|sp|Q96L91|EP400_HUMAN RecName: Full=E1A-binding protein p400; AltName: Full=CAG repeat
            protein 32; AltName: Full=Domino homolog; Short=hDomino;
            AltName: Full=Trinucleotide repeat-containing gene 12
            protein; AltName: Full=p400 kDa SWI2/SNF2-related protein
          Length = 3159

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1868 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1927

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1928 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1986

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1987 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 2033


>gi|297263902|ref|XP_001105690.2| PREDICTED: e1A-binding protein p400-like isoform 2 [Macaca mulatta]
          Length = 3268

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1973 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 2032

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 2033 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 2091

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 2092 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 2138


>gi|168270576|dbj|BAG10081.1| E1A binding protein p400 [synthetic construct]
          Length = 3043

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1751 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1810

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1811 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1869

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1870 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1916


>gi|119618942|gb|EAW98536.1| E1A binding protein p400, isoform CRA_c [Homo sapiens]
          Length = 2066

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|119618940|gb|EAW98534.1| E1A binding protein p400, isoform CRA_a [Homo sapiens]
          Length = 3081

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1785 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1844

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1845 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1903

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1904 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1950


>gi|15529034|gb|AAK97789.1| p400 SWI2/SNF2-related protein [Homo sapiens]
          Length = 3124

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1832 HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1891

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1892 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1950

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1951 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1997


>gi|302802704|ref|XP_002983106.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
 gi|300149259|gb|EFJ15915.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
          Length = 429

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 32/197 (16%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWK-----EVHDEKIKALEVIIE--KANAAPIIVAYHFN 78
            ++  +  +      +  + +  +          K   +  ++   +     +I+   + 
Sbjct: 180 LAEDSRLARACVHPCFAVDVESPQLEQQDPKAGAKTAFVMELLRFLRNKPEKLIIFGQYR 239

Query: 79  SDLARLQKAFPQ---------------GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGH 121
             L  L+    +                   ++       +N       ++     +CG 
Sbjct: 240 QPLELLKNMIMERLGWRELHEVLYMSGETATNERVRISSTFNSKSSTARVILVSIKACGE 299

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV- 180
           G++L  GG+ +V     W+         R  V+R  + G K+ V+VY L+  NT++  V 
Sbjct: 300 GISL-VGGSRVVVLDTAWNPSTV-----RQAVSRAFRIGQKKKVYVYRLLVGNTLEHEVE 353

Query: 181 -LQRLRTKSTIQDLLLN 196
            L+R   K  +   L +
Sbjct: 354 KLRRSMRKDFLAMALFH 370


>gi|255723742|ref|XP_002546800.1| hypothetical protein CTRG_01105 [Candida tropicalis MYA-3404]
 gi|240134691|gb|EER34245.1| hypothetical protein CTRG_01105 [Candida tropicalis MYA-3404]
          Length = 475

 Score = 64.8 bits (156), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 22/167 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------------KA 87
           +Y  +           I+ L+ +  +   +  +V   F+S L  ++              
Sbjct: 290 LYLYDPNRSSSKIQALIRHLKNLHSQVPNSKAVVFSQFSSYLDIIETELKLASDDFIVFK 349

Query: 88  FPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           F     ++     ++ +N     GKI +L     + G GLNL    +       WW    
Sbjct: 350 FDGRLNMNDRSKLLESFNKPLTNGKIAILLLSLRAGGVGLNLTT-ASRAFMMDPWWSPSV 408

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             Q I+RI      + G    V V   I +N+I+  +L+    K  I
Sbjct: 409 EDQAIDRI-----HRIGQNETVKVVRFIMENSIETKMLKIQDLKKQI 450


>gi|242046444|ref|XP_002461093.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
 gi|241924470|gb|EER97614.1| hypothetical protein SORBIDRAFT_02g040560 [Sorghum bicolor]
          Length = 756

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 54  EKIKALEVII--EKANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI A+   +          ++  H    +  +++              +     +    
Sbjct: 512 AKIPAVLDFLGTMIEAGCKFLIFAHHQPMIDAIEQHLSKKKVKCIKIDGKTPLTTRQTLV 571

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                   I        + G+G+ L    + ++F  L W   +           R  + G
Sbjct: 572 TSFQENDDIKAAVLSIKAGGYGITLTA-ASTVIFAELSWTPGDII-----QAEDRAHRIG 625

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              +V VYYL+A  T D+L+   ++ K      +L+  +K
Sbjct: 626 QVSSVNVYYLLANGTADDLMWDSVQGKLENLGQMLDGQEK 665


>gi|291235012|ref|XP_002737441.1| PREDICTED: chromodomain helicase DNA binding protein 1-like
           [Saccoglossus kowalevskii]
          Length = 834

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 19/113 (16%)

Query: 98  PCTIQEWNEGKIPLLFAHPA-------------SCGHGLNLQYGGNILVFFSLWWDLEEH 144
              +   N     +L                    G GLNL    + ++F    ++ +  
Sbjct: 259 DQLLSFLNSRAHKVLLFSQMTRMLDIIQDYLGYRGGQGLNL-ASADTVIFVDSDFNPQN- 316

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +     R  + G  + V +  L+ ++T++E++L+R   K ++ + ++  
Sbjct: 317 ----DLQAAARAHRIGQTKPVKIIRLVGRDTVEEIILKRADEKLSLTNTVIEG 365


>gi|237830003|ref|XP_002364299.1| helicase, putative [Toxoplasma gondii ME49]
 gi|211961963|gb|EEA97158.1| helicase, putative [Toxoplasma gondii ME49]
 gi|221507167|gb|EEE32771.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 1200

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G +           N+    +L       G GL L      +VF  +  +        E 
Sbjct: 963  GHSQADRTTLWYFRNDPHARVLLCSLLRAGRGLTLTE-ATHVVFLEVPLNHA-----EEE 1016

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT-KSTIQDLL 194
              + R  +   KR   V+  I +++++E ++Q  +  +  + + L
Sbjct: 1017 QAIGRVYRMAQKRQTHVWRFIVKDSVEERIVQMRQKPRDGLSERL 1061


>gi|146294462|ref|YP_001184886.1| helicase domain-containing protein [Shewanella putrefaciens CN-32]
 gi|145566152|gb|ABP77087.1| helicase domain protein [Shewanella putrefaciens CN-32]
          Length = 877

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 64/167 (38%), Gaps = 24/167 (14%)

Query: 52  HDEKIKALEV-----IIEKANAAPIIVAYHFNSDLARLQKAF------------PQGRTL 94
           HD+K+          +++      I++   + +    +++A               G + 
Sbjct: 446 HDDKLSRFMDTLLKQLLKDNPNEKILIFSEYRATQEYIKEAITGQFGEDKVVLLHGGMSH 505

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    I +++            + G G+NLQ   + +V + L W+     Q I R+   
Sbjct: 506 DERRDVIWQFDNEVQ--FLISTEAGGEGINLQQHCHTMVNYDLPWNPMRLVQRIGRL--- 560

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              + G ++ V V  + +  T+DE ++  +  +       + A++ +
Sbjct: 561 --YRYGQQKKVVVLNVNSPGTVDEQIIALMYQRIEQVVSDMAAVQGD 605


>gi|26351357|dbj|BAC39315.1| unnamed protein product [Mus musculus]
          Length = 616

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|269860391|ref|XP_002649917.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066677|gb|EED44151.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 568

 Score = 64.4 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 17/142 (11%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLL 112
              N    +V  H  + +  L+                    K    ++ +    +  + 
Sbjct: 408 MITNNDKFLVFAHHQTMINELENCCQNCNIYYIRIDGRTGKQKRYELVELFQTNTEYQVA 467

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   GL L      +VF  L+W+     Q  +RI      + G    V +YYLI 
Sbjct: 468 ILSLTAASTGLTLTA-AKSVVFAELYWNPGTLMQAEDRI-----HRIGQTTPVDIYYLIC 521

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           + TIDE+V   L  K  I + +
Sbjct: 522 KKTIDEIVWPYLLKKLNILEKI 543


>gi|68076769|ref|XP_680304.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56501218|emb|CAH93993.1| DNA helicase, putative [Plasmodium berghei]
          Length = 1396

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L     + G GLNL    + +    LWW+       IE     R  + G  + V
Sbjct: 1283 NESGKVLLCSLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERIHRIGQLKDV 1336

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Y  + + T++E +LQ  ++K    +  L
Sbjct: 1337 NIYKFVLEKTVEERILQIHQSKQYTANQCL 1366


>gi|154338293|ref|XP_001565371.1| helicase-like protein  [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062420|emb|CAM42281.1| putative helicase-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1398

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFS 136
             S             +  +    +  ++    P L      + G G+ +      ++   
Sbjct: 981  KSPRPIRYCRLDGSHSAAQRAAMLDNFDRPDGPDLFLLSMKAGGVGITVTA-ATRVILVD 1039

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              ++  + Q       + R  + G  R V+VY L+   T++  +  +   K  +   ++ 
Sbjct: 1040 TSFNPADDQ-----QAIGRAYRYGQTRPVYVYRLMCYPTLEYSIFAQKLAKEWLFKTVVE 1094

Query: 197  --ALKKETI 203
              ++K++ +
Sbjct: 1095 ESSVKRDGL 1103


>gi|238602372|ref|XP_002395662.1| hypothetical protein MPER_04252 [Moniliophthora perniciosa FA553]
 gi|215466782|gb|EEB96592.1| hypothetical protein MPER_04252 [Moniliophthora perniciosa FA553]
          Length = 167

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 20/149 (13%)

Query: 70  PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             +V   + + L            R  +     +  D+   T    ++    +L     +
Sbjct: 15  KTVVFSQWTTMLDKVEDALEVAGIRYARLDGTMKRDDRTRATEALKHDPGREVLVVTLRA 74

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G GLNL      +     +W+       +E   V R  + G  R V    LI Q  I++
Sbjct: 75  GGVGLNL-NVDQRVYVMDPYWNPA-----VENQAVARILRLGQTRPVTTVKLITQGAIED 128

Query: 179 LVLQRLRTKSTIQDLLLNAL---KKETIH 204
            +L+  + K+ + +L L      K E I 
Sbjct: 129 RILEVQKMKTELANLTLGGQNFSKAELIQ 157


>gi|190352249|gb|ACE76520.1| SNF2H-like protein [Sus scrofa]
          Length = 239

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 35/190 (18%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------ 42
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +      
Sbjct: 50  VKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 109

Query: 43  --DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------ 92
                      +  K+  L+ ++   K   + +++       L  L+             
Sbjct: 110 PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 169

Query: 93  ----TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 D+   +I  +NE      +      + G G+NL    ++++ +   W+ +   Q
Sbjct: 170 DGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINL-ATADVVILYDSDWNPQVDLQ 228

Query: 147 MIERIGVTRQ 156
            ++R     Q
Sbjct: 229 AMDRAHRIGQ 238


>gi|170079584|ref|YP_001736217.1| DEAD/H helicase [Synechococcus sp. PCC 7002]
 gi|169887253|gb|ACB00962.1| DEAD/H helicase [Synechococcus sp. PCC 7002]
          Length = 1111

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                +E+ +G+I +L     S   GLNLQ  G +L+ + + W+    +Q I RI     
Sbjct: 859 KERIKREFRQGEIKILLCT-ESASEGLNLQTCG-VLINYDMPWNPMRVEQRIGRID---- 912

Query: 157 RQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G     V ++      T++  V QRLR +      ++ +L+
Sbjct: 913 -RIGQTFPRVIIHNFYYDGTVEARVYQRLRDRIHAFSSVVGSLQ 955


>gi|149058725|gb|EDM09882.1| rCG46237 [Rattus norvegicus]
          Length = 716

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKARYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELFWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|148707811|gb|EDL39758.1| mCG13937, isoform CRA_b [Mus musculus]
          Length = 1097

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 354 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 413

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 414 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 467

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 468 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 505


>gi|26350683|dbj|BAC38978.1| unnamed protein product [Mus musculus]
          Length = 1069

 Score = 64.4 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  +     +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIRQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|297739847|emb|CBI30029.3| unnamed protein product [Vitis vinifera]
          Length = 1695

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 40/172 (23%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           ++T++ +Q   G +     +    +   K +    +I       + V   F +       
Sbjct: 798 TETLRLIQFDCGKLQ----ELAVLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYM 853

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   ++    +Q +N   KI +      S                           
Sbjct: 854 RLDGSTQPEERQTLMQRFNTNPKIFIFILSTRS--------------------------- 886

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                    R  + G  R V +Y LI+++TI+E +L++   K  + DL++ +
Sbjct: 887 --------DRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQS 930


>gi|221487370|gb|EEE25602.1| hypothetical protein TGGT1_086760 [Toxoplasma gondii GT1]
          Length = 1213

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G +           N+    +L       G GL L      +VF  +  +        E 
Sbjct: 975  GHSQADRTTLWYFRNDPHARVLLCSLLRAGRGLTLTE-ATHVVFLEVPLNHA-----EEE 1028

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT-KSTIQDLL 194
              + R  +   KR   V+  I +++++E ++Q  +  +  + + L
Sbjct: 1029 QAIGRVYRMAQKRQTHVWRFIVKDSVEERIVQMRQKPRDGLSERL 1073


>gi|326923079|ref|XP_003207769.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
           domain-containing protein 3-like [Meleagris gallopavo]
          Length = 1262

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + +    +V  H  S L                        +    + ++ 
Sbjct: 493 VKDYIRMMLENDKLKFLVFAHHLSMLQACAEAVIENKVRYIRIDGSVPSAERIHLVNQFQ 552

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL        +VF  L+WD         +    R  + G   +
Sbjct: 553 KDPDTRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 606

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V +++LIA+ T+D L+   L  K+ +    LN  K+  
Sbjct: 607 VNIHFLIAKGTLDPLMWAMLNRKAKVTGSTLNGKKERM 644


>gi|239977150|sp|B6EU02|JBP2_LEITA RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Short=LtJBP2;
            Includes: RecName: Full=Probable DNA helicase JBP2;
            Includes: RecName: Full=Thymine dioxygenase JBP2
 gi|209407460|emb|CAR82639.1| J-binding protein 2 [Leishmania tarentolae]
          Length = 1098

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 7/138 (5%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             +I      +  ++     +          +     +     +      + +L       
Sbjct: 912  LIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIA 971

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             +GL+     N +V F  WW+ +     ++   + R  +   ++ V VY LI+  T ++ 
Sbjct: 972  AYGLDFTA-ANHVVLFDSWWNPQ-----VDAQAIARAYRRNQRKPVTVYRLISA-TENKF 1024

Query: 180  VLQRLRTKSTIQDLLLNA 197
            VL     K  +   +L+ 
Sbjct: 1025 VLSSQTRKIALFKCILHE 1042


>gi|257484420|ref|ZP_05638461.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 54

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             WW+        E     R  + G  + VFVY +IA+ T++E + +  R KS +   +
Sbjct: 1   DPWWNPAA-----ENQATDRAYRIGQDKPVFVYKMIARGTVEEKIQRLQREKSALAAGV 54


>gi|109730809|gb|AAI17923.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
 gi|109731403|gb|AAI17922.1| Zranb3 protein [Mus musculus]
          Length = 1069

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|302906966|ref|XP_003049543.1| hypothetical protein NECHADRAFT_74036 [Nectria haematococca mpVI
            77-13-4]
 gi|256730479|gb|EEU43830.1| hypothetical protein NECHADRAFT_74036 [Nectria haematococca mpVI
            77-13-4]
          Length = 1043

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 33/156 (21%)

Query: 68   AAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHP 116
                +V   +   L                F       +    I+ +  +  + +     
Sbjct: 871  GVKSVVFTSWRMTLDLVAIGLDQARIRYVRFDGNVPQKQRSSVIETFKKDPSVTVFLLTL 930

Query: 117  ASCGHGLNL-----------------QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +    G                        +        W+        E   + R  + 
Sbjct: 931  SCGAVGWAFVPCIKRHPTNVCPHRLTLTEASRAFLIEPHWNPTL-----EEQALARVHRL 985

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            G +R V       ++T +E VL   ++K  ++++LL
Sbjct: 986  GQQREVTTVRFFVKDTFEERVLDVQKSKKKLEEVLL 1021


>gi|118401967|ref|XP_001033303.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89287651|gb|EAR85640.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1040

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 20   IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
            I+  N   K ++  Q++            K    +K K+L     +   A ++ A     
Sbjct: 858  IDTLNLLEKHLQKKQIS------FMRFEGKLTKSQKQKSLYHFENQTTNADLLQASTLKE 911

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D ++ ++   Q    D      QE       +L A   S   GLNL  G N L+    WW
Sbjct: 912  DSSQQEQTMGQEEQYDNSNQN-QENTSQTPTVLLASLMSGYVGLNLT-GANNLILCDSWW 969

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +       +E   + R  + G ++  ++Y +I ++TI+E + Q    K  I   + N+ +
Sbjct: 970  NPA-----VEDQAINRIHRLGQQKQTYIYKMICKDTIEEKIQQINDQKRDIFQTIFNSSE 1024

Query: 200  K 200
            +
Sbjct: 1025 Q 1025


>gi|297693490|ref|XP_002824051.1| PREDICTED: e1A-binding protein p400-like [Pongo abelii]
          Length = 3025

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24   NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
            ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 1740 HAAPYFQQLRQTTVPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 1799

Query: 82   ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
              L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 1800 DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 1858

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1859 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 1905


>gi|124430705|ref|NP_081954.1| zinc finger Ran-binding domain-containing protein 3 [Mus musculus]
 gi|81885066|sp|Q6NZP1|ZRAB3_MOUSE RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|42406402|gb|AAH66035.1| Zinc finger, RAN-binding domain containing 3 [Mus musculus]
          Length = 1069

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 326 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 477


>gi|291295620|ref|YP_003507018.1| helicase domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290470579|gb|ADD27998.1| helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 940

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 31/210 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           ++Y +     +    G  + A   A++  +  +LA       E +      D K++    
Sbjct: 428 EEYDQ----EFDLTPGGEVSAE--AAEQRRLRELA------REAEALAGAKDRKLQRAIE 475

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR-------------TLDKDPCTIQEWNE 106
           +++   A     IV   F      +     Q               +  +    ++   +
Sbjct: 476 LVKDLLAEGHHPIVFCRFIQTAEYVAGHLRQALGAGVAVEAVTGLLSPPEREQAVERLGQ 535

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A       G+NLQ   + ++ + L W+   H+Q   R+    Q +   K    
Sbjct: 536 QPVRVLVAT-DCLSEGINLQQYFSAVLHYDLSWNPTRHEQREGRVDRYGQPRRQVK---T 591

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + Y  A N +D +VL+ L  K       L 
Sbjct: 592 LTYFGANNPVDGIVLEVLLRKHKAIRSALG 621


>gi|297818740|ref|XP_002877253.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297323091|gb|EFH53512.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1254

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EKI      I        +    F     R          L +   
Sbjct: 1057 VMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWQRGRELLTLTGDLELFERGR 1116

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++ E  G+  +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1117 VIDKFEEPGGQSRVLLASITACAEGISLTA-ASRVIMLDSEWNPSKT-----KQAIARAF 1170

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+++ T++E   +R   K  +  ++ + 
Sbjct: 1171 RPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSE 1210


>gi|224056086|ref|XP_002194081.1| PREDICTED: zinc finger, RAN-binding domain containing 3
           [Taeniopygia guttata]
          Length = 1026

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 22/182 (12%)

Query: 37  NGAVYYDE--EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------- 83
           +          + +KE    K  A++  I+       +    F   L+            
Sbjct: 303 SHFSQVMNLITRMYKETAIAKAGAVKDYIKMMLDNDKLKFLVFAHHLSMLQACTEAVIES 362

Query: 84  --LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    + ++  + +  +      + G GL        +VF  L+WD
Sbjct: 363 KARYIRIDGSVPSAERIHLVNQFQKDPETRVAILSIQAAGQGLTFTA-ATHVVFAELYWD 421

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                    +    R  + G   +V +++LIA+ T+D L+   L  K+ +    LN  K+
Sbjct: 422 PGHI-----KQAEDRAHRIGQCSSVNIHFLIAKGTMDTLMWAMLNRKAKVTGSTLNGKKE 476

Query: 201 ET 202
           + 
Sbjct: 477 KM 478


>gi|303389620|ref|XP_003073042.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302186|gb|ADM11682.1| Snf2/Rad54-like helicase [Encephalitozoon intestinalis ATCC 50506]
          Length = 556

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
           AV    ++  + +     K ++ II   +   +     F  +                  
Sbjct: 378 AVKLKIDQVKQYISTIVEKDMKFIIFCHHVEMMDGLEEFLREKGVSIIRIDGSTPSSNRH 437

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++ +    +I        +C  GL L   G  +VF  L+W+     Q  +RI      
Sbjct: 438 MLVKSFQENEEIKTALLSITACSTGLTLTA-GRAVVFAELYWNPGVLLQAEDRI-----H 491

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + G K +V + YL+A+ TIDE V  +L +K  + + L
Sbjct: 492 RIGQKNSVDIIYLVARGTIDEYVWPKLLSKLNVLESL 528


>gi|307105253|gb|EFN53503.1| hypothetical protein CHLNCDRAFT_136836 [Chlorella variabilis]
          Length = 445

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 94  LDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            ++    +  +  +           + G G+ L      +VF  L+W+  +         
Sbjct: 212 NERRKAAVDTFQRDRACRAALLSITAAGTGITLTE-AQAVVFVELYWNPGQLV-----QA 265

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             R  + G +R + V+YL+A  T D+ + +  + K  +    +     E
Sbjct: 266 EDRAHRLGQRRVLEVHYLVAPGTADDTIWRLCQHKLGVVGGAMGEEDAE 314


>gi|148707810|gb|EDL39757.1| mCG13937, isoform CRA_a [Mus musculus]
          Length = 1073

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 330 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 389

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 390 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 443

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 444 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 481


>gi|290976679|ref|XP_002671067.1| DEXH-box helicase [Naegleria gruberi]
 gi|284084632|gb|EFC38323.1| DEXH-box helicase [Naegleria gruberi]
          Length = 1385

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                          ++    +  +   G   +      + G G  +    + ++F  L+
Sbjct: 702 MRGDYYIRIDGSTDSNRRQNLVNTFRTNGHCRVAILSIKAAGVGYTMT-PCSTVLFAELY 760

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           W   +      R    R  + G   AV + YL+ ++T DE +   L+ K  +    ++ 
Sbjct: 761 WTPSDL-----RQAEDRVHRMGQTNAVSIKYLLGKDTFDEYLWPLLQKKLEVVGKSVDG 814


>gi|294874590|ref|XP_002767014.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239868417|gb|EEQ99731.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 417

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK------EVHDEKIK----ALEVIIE 64
             G++ +  N  +      +L +      +    K           KI+     +E + +
Sbjct: 232 FDGDDEDDGNLVACMSGLRELQSDPRLPRKHSILKRAPIANFESSSKIEALVAEVEAMRK 291

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
               A  +V   F S L   Q    +                +        +    PLL 
Sbjct: 292 ADGEAKGLVFSSFVSLLELCQYRLHKAGITTLILHGELPLPLRAKVMKTFSSADTCPLLL 351

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               S G GLNLQ   N +     WW+    Q         R  + G  + V V  ++  
Sbjct: 352 ISLMSGGEGLNLQ-VANHVFLLDPWWNPAVEQ-----QATQRAHRLGQSKRVQVLKMLTH 405

Query: 174 NTIDELVLQRLR 185
           +TI++ ++   R
Sbjct: 406 DTIEDRIVALQR 417


>gi|221052999|ref|XP_002257874.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|193807706|emb|CAQ38410.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 1578

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              +  +      S   GLNLQ   + ++ F   ++  +     +   + R  + G K  V
Sbjct: 1126 NDEAMIFMLSTRSGSLGLNLQS-ADTVIIFDSDFNPHQ-----DIQAMCRCHRIGQKNIV 1179

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             V+  I  + ++EL+ QR + K TI D ++ A
Sbjct: 1180 KVFRFITLSGVEELIFQRAQDKLTINDKVIQA 1211



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 38/121 (31%), Gaps = 16/121 (13%)

Query: 3    QYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---VHDEKIKA 58
             Y + + + +  +    +I   +  +  ++  ++ N    + +E +  +       K + 
Sbjct: 896  LYRQIEMKGFMQINRNGSITNKSCQNVIMELRKVVNHPYLFLQEYNIDDFLVKCSGKFEV 955

Query: 59   LEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNE 106
            L+ ++ K       I++       +  L                     +    I+++N 
Sbjct: 956  LDRMLPKLLRFRHKILIFSQMTKLMDILCDYLDYRGYRFHRLDGNIGLQERRKIIEQFNR 1015

Query: 107  G 107
             
Sbjct: 1016 D 1016


>gi|225432202|ref|XP_002269671.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736823|emb|CBI26024.3| unnamed protein product [Vitis vinifera]
          Length = 677

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 19/157 (12%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCT 100
            KI A+   +          ++  H    +  + +                 +  +    
Sbjct: 481 AKIPAVLDYLGTVVEAGCKFLIFAHHQPMIDSIFQFLVKKKVGCIRIDGSTPSSSRQAFV 540

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                +  I        + G GL L    + ++F  L W   +           R  + G
Sbjct: 541 TDFQEKDTIKAAVLSIKAGGVGLTLTA-ASTVIFAELSWTPGDLI-----QAEDRVHRIG 594

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +V ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 595 QVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDG 631


>gi|190194425|ref|NP_775089.1| E1A-binding protein p400 isoform 2 [Mus musculus]
          Length = 2999

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1696 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1749

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1750 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1809

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1810 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1863

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1864 LVSGNSIEEKLLK 1876


>gi|153945880|ref|NP_083613.2| E1A-binding protein p400 isoform 1 [Mus musculus]
          Length = 3035

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1732 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1785

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1786 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1845

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1846 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1899

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1900 LVSGNSIEEKLLK 1912


>gi|157821357|ref|NP_001100619.1| E1A binding protein p400 [Rattus norvegicus]
 gi|149063710|gb|EDM14033.1| E1A binding protein p400, isoform CRA_a [Rattus norvegicus]
          Length = 3034

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1734 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1787

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1788 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1847

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1848 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1901

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1902 LVSGNSIEEKLLK 1914


>gi|148688062|gb|EDL20009.1| E1A binding protein p400, isoform CRA_c [Mus musculus]
          Length = 3004

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1701 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1754

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1755 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1814

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1815 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1868

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1869 LVSGNSIEEKLLK 1881


>gi|148688060|gb|EDL20007.1| E1A binding protein p400, isoform CRA_a [Mus musculus]
          Length = 3035

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1732 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1785

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1786 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1845

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1846 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1899

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1900 LVSGNSIEEKLLK 1912


>gi|154334093|ref|XP_001562198.1| j-binding protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|239977156|sp|A4H7G5|JBP2_LEIBR RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Includes: RecName:
            Full=Probable DNA helicase JBP2; Includes: RecName:
            Full=Thymine dioxygenase JBP2
 gi|134060314|emb|CAM37473.1| putative j-binding protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1098

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHF---------- 77
            ++  Q A   +  +E+         K++ L  I+ +       +I+   +          
Sbjct: 871  MRLEQYA--QMIENEQLDAFINVSGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRT 928

Query: 78   -NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
              +          +     +     +      + +L        +GL      N +V F 
Sbjct: 929  LTALRVCTFTVRGRDSQDRRRRAMHEFSENKDLTVLVLSTKIAAYGLEFTA-ANHVVLFD 987

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             WW+ +      +   + R  +   ++ V VY LI+  T ++ VL+    K  +   + +
Sbjct: 988  SWWNPQA-----DAQAIARAYRRNQRKPVTVYRLISA-TENKFVLRSQTRKIALFKCIFH 1041


>gi|55976523|sp|Q8CHI8|EP400_MOUSE RecName: Full=E1A-binding protein p400; AltName: Full=Domino homolog;
            Short=mDomino; AltName: Full=p400 kDa SWI2/SNF2-related
            protein
          Length = 3072

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1769 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1822

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1823 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1882

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1883 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1936

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1937 LVSGNSIEEKLLK 1949


>gi|27348239|dbj|BAC45254.1| mDomino-S [Mus musculus]
          Length = 2999

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1696 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1749

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1750 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1809

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1810 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1863

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1864 LVSGNSIEEKLLK 1876


>gi|27348237|dbj|BAC45253.1| mDomino [Mus musculus]
          Length = 3035

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1732 LYSSRLRALRQCLREHTGPYHRQLQQLTALR------SLQFPELRLVQFDSGKLEALAIL 1785

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1786 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYVRIDENANSEQRQELMRSFNRDRRI 1845

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1846 FCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1899

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 1900 LVSGNSIEEKLLK 1912


>gi|152986239|ref|YP_001351355.1| SNF2 family DNA/RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961397|gb|ABR83422.1| superfamily II DNA/RNA helicase, SNF2 family [Pseudomonas aeruginosa
            PA7]
          Length = 1010

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 66/240 (27%), Gaps = 41/240 (17%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE---------V 51
            ++ Y +                  + +   +   ++      +E   + E         +
Sbjct: 772  LQAYDEVLDSYRARRASAEDMRGTALAALTQLRSISLHPRLENESALYCEDGKHARQLMM 831

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------------- 92
               K+  L  ++++  +    +I+          L+    Q                   
Sbjct: 832  ESGKLAVLLQLLDEIRSKGEKVILFMMTKRLQRVLKLWLDQIYDLNVAVINGDTQAVATR 891

Query: 93   -TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                     I E+       +               G N +V     W+  +     E  
Sbjct: 892  AEDMTRKKLIAEFEAKSGFNILIMSPVAAGVGLTVIGANHVVHLERHWNPAK-----EAQ 946

Query: 152  GVTRQRQAGFKRAVFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLL--NAL-KKETIH 204
               R  + G  + VF++         ++ D  + + LR K  ++D ++   A+ + E I 
Sbjct: 947  ASDRVYRIGQTKPVFIHLPAVTHPQFDSFDVHLDRLLRGKLMLKDAVVTPEAVSESEMIQ 1006


>gi|255715185|ref|XP_002553874.1| KLTH0E09174p [Lachancea thermotolerans]
 gi|238935256|emb|CAR23437.1| KLTH0E09174p [Lachancea thermotolerans]
          Length = 1148

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL    +       WW      Q I+RI      + G    V V   I +++I+E
Sbjct: 1059 GGVGLNLT-CASRAYMMDPWWSPSLEDQAIDRI-----HRIGQVNDVKVVRFIMEHSIEE 1112

Query: 179  LVLQRLRTKSTIQDLLLNALKKE 201
             +L+    K T+ + + +A + E
Sbjct: 1113 KMLRIQERKRTLGEAV-DADEDE 1134


>gi|327260656|ref|XP_003215150.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Anolis carolinensis]
          Length = 1095

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 30/202 (14%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           DL     +         +              K         +K    ++ + +    +V
Sbjct: 294 DLDSTESDFVQVMGLITR------------MFKQTAIAKAGAVKDYIKMLLENDNLKFLV 341

Query: 74  AYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
             H  S L                        +    + ++  +    +      + G G
Sbjct: 342 FAHHLSMLQACTEAVIENKTRYIRIDGSVASSERINLVNQFQKDPDTRVAILSIQAAGQG 401

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           L        +VF  L+WD         +    R  + G   +V ++YLIA  T+D L+  
Sbjct: 402 LTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRIGQCSSVNIHYLIANGTMDPLMWA 455

Query: 183 RLRTKSTIQDLLLNALKKETIH 204
            L  K+ +    LN  KKE + 
Sbjct: 456 MLNRKARVTGTTLNG-KKEKLQ 476


>gi|330794038|ref|XP_003285088.1| hypothetical protein DICPUDRAFT_148935 [Dictyostelium purpureum]
 gi|325085011|gb|EGC38427.1| hypothetical protein DICPUDRAFT_148935 [Dictyostelium purpureum]
          Length = 232

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 34/164 (20%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
            +Y           D  +  L ++++    +  ++   + S L  +              
Sbjct: 90  PIYDSSNWKCSTKIDSLLDELNIVLKNEPDSKCLIFSQWTSMLDLI-------------- 135

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                     IPL               +  +       WW+    +Q I+R+      +
Sbjct: 136 ---------DIPLNINSMPWWIG-----FKFSCCFTCDPWWNPATEEQAIDRV-----YR 176

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G  + V V   + +++I+E +L+  ++K  +    L  +KK+ 
Sbjct: 177 IGQNKNVNVIRFLIKDSIEEKILELQKSKKDLAKEAL-TMKKQP 219


>gi|320170024|gb|EFW46923.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2080

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 11/151 (7%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-----LQKAFPQGRT 93
                   ++     D  I+ L  +  +      +V   +   L+R       +       
Sbjct: 1904 HASIPLARNSSTKIDALIRYLIELERQNPGTKSVVFSQWGHVLSRVGEALQLQGIGFTTI 1963

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                       +  K+ +   H      GL L      +       +       +E   +
Sbjct: 1964 QTGKDAASLFHSNPKVTVFLLHSRHKSSGLTLVA-ATHVFLMDPIINPA-----VELQAI 2017

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
             R  + G      V+  I +NTI++ VL+  
Sbjct: 2018 NRVHRIGQTAETHVHRFIVENTIEQQVLRLA 2048


>gi|302852236|ref|XP_002957639.1| hypothetical protein VOLCADRAFT_98711 [Volvox carteri f.
           nagariensis]
 gi|300257051|gb|EFJ41305.1| hypothetical protein VOLCADRAFT_98711 [Volvox carteri f.
           nagariensis]
          Length = 1172

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 10/141 (7%)

Query: 60  EVIIEKANAAPIIVA-YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLFAH 115
           + I+  A+   ++                       D+    ++E+         +    
Sbjct: 569 DKILVFAHHQTVLDTLEAHVKQRKVRYIRIDGSVPPDRREVAVREFQASDPHSPRVALLA 628

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GL L    +++VF  L                 R  + G    V VYYL+   T
Sbjct: 629 LRAAGAGLTLTA-ASVVVFAELDQTPALL-----AQAEDRAHRVGQGSHVHVYYLLGSGT 682

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           +DE + + L TK  +    L+
Sbjct: 683 LDERIWRMLETKKFVMGAALD 703


>gi|83315696|ref|XP_730904.1| DNA repair protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490775|gb|EAA22469.1| DNA repair protein-like-related [Plasmodium yoelii yoelii]
          Length = 1412

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +L     + G GLNL    + +    LWW+       IE     R  + G  + V
Sbjct: 1298 NKSGKVLLCSLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERIHRIGQLKDV 1351

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +Y  + + T++E +LQ  ++K    +  L
Sbjct: 1352 NIYKFVLEKTVEERILQIHQSKQYTANQCL 1381


>gi|315645021|ref|ZP_07898147.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315279442|gb|EFU42747.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 94

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N ++ +  WW+       +E     R  + G  R V V+ LI+Q T++E + + + 
Sbjct: 3   LTRANHVLHYDRWWNPA-----VENQATDRVFRIGQHRNVQVHKLISQGTLEERIDELIE 57

Query: 186 TKSTIQDLLLNALK 199
            K  + + ++ + +
Sbjct: 58  QKKALSEQVVGSGE 71


>gi|291000680|ref|XP_002682907.1| predicted protein [Naegleria gruberi]
 gi|284096535|gb|EFC50163.1| predicted protein [Naegleria gruberi]
          Length = 651

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 52  HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPC 99
              K+  L+ ++EK       +++   + + L              + F    T  +   
Sbjct: 173 SSSKLIVLDYLLEKHYGEGNKVVIFSQYTTTLDFLEYYLMLKEYKYQRFDGSNTKSERTE 232

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            ++ +        +      + G GLNL    N+++ + + W+        +     R  
Sbjct: 233 AVESFQHENSQDFVFLLSTKAGGVGLNL-ISANVVIEYDITWNP-----HADEQATNRCH 286

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           + G  + V+VY  + Q +I++LVL+  + K  +   + + + + +I 
Sbjct: 287 RIGQTKTVYVYKFLIQKSIEDLVLKYTQEKLAMSTRVNSNVNQNSID 333


>gi|323704524|ref|ZP_08116102.1| helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535986|gb|EGB25759.1| helicase domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 893

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F  +            ++++    I E+ +     +     + G GLNLQ+  NI++ + 
Sbjct: 491 FLQEKGYSVAILNGTMSIEERNNAIDEFKKSAD--ILVSTDAGGEGLNLQF-CNIMINYD 547

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI------ 190
           L W+  + +Q I RI      + G KR V V   +  +TI+  V Q L  K  I      
Sbjct: 548 LPWNPMKIEQRIGRID-----RIGQKRDVVVINYVLSDTIEFRVRQVLEEKLKIIFEQFG 602

Query: 191 ---QDLLLNALKKET 202
                 +L++++ E 
Sbjct: 603 VDKMQDILDSVQSEM 617


>gi|302759176|ref|XP_002963011.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
 gi|300169872|gb|EFJ36474.1| hypothetical protein SELMODRAFT_438275 [Selaginella moellendorffii]
          Length = 2074

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 70   PIIVAYHFNSDLARLQK----AFPQGRTLDKDPCT---IQEWNEGKIPLLFAHPASCGHG 122
             I+V   +   L  L+            L +       I E+ +  I ++        +G
Sbjct: 1111 KILVFSTWQEVLDLLEHALKSNKLSWVRLKQRRQMGSSILEFKKENIQVMLLPIQHGANG 1170

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            LNL      ++      +       +E   + R  + G +    V+  I +NT++E + +
Sbjct: 1171 LNL-IEAQHVILVEPLLNPA-----VEAQAINRVHRIGQRLKTLVHRFIIRNTVEENIYK 1224

Query: 183  RLRTKSTI 190
              + K+ +
Sbjct: 1225 MSQQKTNL 1232


>gi|255559547|ref|XP_002520793.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223539924|gb|EEF41502.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1246

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EK+      I   N    +    F     R          L +   
Sbjct: 1050 VMFVLNLVYRIVKKEKVLIFCHNIAPINIFVELFENVFRWQRGREIMVLTGDLELFERGR 1109

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++ E      +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1110 VMDKFEEPGSPSRVLLASITACAEGISLTA-ASRVILLDSEWNPSKT-----KQAIARAF 1163

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+A  T++E    R   K  +  ++ + 
Sbjct: 1164 RPGQQKVVYVYQLLATGTLEEDKYSRTTWKEWVSSMIFSE 1203


>gi|83310005|ref|YP_420269.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944846|dbj|BAE49710.1| Superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
          Length = 760

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 13/147 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------KDPCTIQEWNEGK 108
           +  +E  +    +  +I+  H      +LQ AF     +D       +         EG 
Sbjct: 551 VTWVEHFLVSKPSEKLIIFAHHIEVQQQLQVAFSDALVIDGKTSATARRKAVKAFQAEGG 610

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L+     +    L L      ++F  L W     +         R  + G    V + 
Sbjct: 611 PRLIICSLRAAQTALTLTR-ARHVLFVELDWTPSGIE-----QAADRAHRIGQDGQVEIT 664

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLL 195
            ++A  ++D+ +L+ +  K  I   ++
Sbjct: 665 LMVAPGSLDDRMLEVITRKRVIIRSVM 691


>gi|154339395|ref|XP_001562389.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062972|emb|CAM39420.1| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1878

 Score = 64.0 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 23/145 (15%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            ++ +E I        ++V   + + L                     +L +    ++   
Sbjct: 1683 LEVVEEIWRTQPDDGVLVFSKYPAFLQLAYDAVAARGYAPHMVCGASSLAQRQRAMRAMQ 1742

Query: 106  EGKI-------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                        +LF    S   GLNL +  N +VF     +       IE   V R  +
Sbjct: 1743 SSSGDSALSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPA-----IEHQAVGRVHR 1796

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQR 183
             G  + V V+++ A +TI+E++ +R
Sbjct: 1797 FGQLKQVIVHHIFAPHTIEEVIYRR 1821


>gi|322499968|emb|CBZ35042.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1873

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 23/145 (15%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            ++ +E I        ++V   + + L                     +L +    ++   
Sbjct: 1677 LEVVEEIWRTQPDDGVLVFSKYPAFLKLAHDAVAAQGYAPHMVCGASSLAQRQRAMRAMQ 1736

Query: 106  EGKI-------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                        +LF    S   GLNL +  N +VF     +    Q       V R  +
Sbjct: 1737 PPSGASVLSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPAIEQ-----QAVGRVHR 1790

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQR 183
             G  R V V++  A +TI+E++ +R
Sbjct: 1791 FGQLRQVIVHHFFAPHTIEEVIYRR 1815


>gi|289580072|ref|YP_003478538.1| helicase [Natrialba magadii ATCC 43099]
 gi|289529625|gb|ADD03976.1| helicase domain protein [Natrialba magadii ATCC 43099]
          Length = 584

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 18/165 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRT 93
           E+       +  +  +E   +      +IV   F +   +             AF  G +
Sbjct: 358 EDIDTVTKQERLLDIVEEARDNVEMGRVIVFTQFRATQRQVLDRLASEGYTVHAFHGGHS 417

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++ + E     +     +   G NLQ+  N+LV   L W+    +Q I R+  
Sbjct: 418 SSEKEKIVKNFEEEGG--ILVSTDAMSEGRNLQF-CNLLVNMDLPWNPMRVEQRIGRV-- 472

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               + G KR VF++ +  ++T++E VL+RL  K  +    +  L
Sbjct: 473 ---HRIGQKRDVFIFNMALKDTVEEYVLERLYHKIDLFQQSVGEL 514


>gi|223940612|ref|ZP_03632456.1| SNF2-related protein [bacterium Ellin514]
 gi|223890730|gb|EEF57247.1| SNF2-related protein [bacterium Ellin514]
          Length = 819

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +     +E+      LL     S   G NLQ+  + LV F L W+  E +Q I R+ 
Sbjct: 658 PAPERHPITEEFRRRGGALLL--THSGTEGRNLQF-SHRLVNFDLPWNPMEIEQRIGRL- 713

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                + G +R V +Y L+   T+ E +L+ L+ K  + ++++  
Sbjct: 714 ----HRLGQQRPVHIYNLVYAGTLQEQLLEILQEKLNLFEVVVGE 754


>gi|146089885|ref|XP_001470501.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070534|emb|CAM68877.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1871

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 23/145 (15%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            ++ +E I        ++V   + + L                     +L +    ++   
Sbjct: 1675 LEVVEEIWRTQPDDGVLVFSKYPAFLKLAHDAVAAQGYAPHMVCGASSLAQRQRAMRAMQ 1734

Query: 106  EGKI-------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                        +LF    S   GLNL +  N +VF     +    Q       V R  +
Sbjct: 1735 PPSGASVLSQRRILFVTSRSANAGLNLTF-ANHVVFLEPNLNPAIEQ-----QAVGRVHR 1788

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQR 183
             G  R V V++  A +TI+E++ +R
Sbjct: 1789 FGQLRQVIVHHFFAPHTIEEVIYRR 1813


>gi|26340760|dbj|BAC34042.1| unnamed protein product [Mus musculus]
          Length = 904

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 161 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 220

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 221 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 274

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 275 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 312


>gi|301299740|ref|ZP_07205990.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852671|gb|EFK80305.1| SNF2 family N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 628

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 21/167 (12%)

Query: 49  KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDK 96
           +++   K      +I    +    ++V   F   + ++++                    
Sbjct: 443 EDIETPKFDRGIKLITDLVSEGKKVLVWGMFVGTMHKIKRYLDEKGLNTILVYGETPKQD 502

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I E+ +G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI     
Sbjct: 503 REELINEFRDGAAQVLISNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGL 562

Query: 157 RQAGFKRAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLLLNA 197
               + R    YYL+++        IDE+V +RL+ K  +    +  
Sbjct: 563 PDNQYTR---YYYLMSKGDVAHQSFIDEMVYRRLKEKEQVMMDAIEG 606


>gi|48696694|ref|YP_024988.1| superfamily II DNA/RNA helicase [Vibrio phage VP5]
 gi|40806157|gb|AAR92075.1| superfamily II DNA/RNA helicase [Vibrio phage VP5]
          Length = 489

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIK-A 58
            + +     +  G+ +       +  +  Q+  G   + ++    +V      + K+   
Sbjct: 271 KELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKMDAM 330

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL------------QKAFPQGRTLDKDPCTIQEWNE 106
           LE I +    A +I+   F +++ ++               +  G +      +I  + +
Sbjct: 331 LEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQD 390

Query: 107 --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                    A+  + G G+ L        ++S  + LE+  Q  +R       + G +  
Sbjct: 391 SSDPSRFFVANQQTAGMGITLT-IATFAYYYSNSFSLEQRLQSEDR-----NHRKGQRNV 444

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +  +   D +V + L++K  +  L+   L++  
Sbjct: 445 CTYIDIWCKADADLMVGRALKSKKDLAVLVDEELQRRI 482


>gi|313768339|ref|YP_004062019.1| hypothetical protein MpV1_136 [Micromonas sp. RCC1109 virus MpV1]
 gi|312599035|gb|ADQ91059.1| hypothetical protein MpV1_136 [Micromonas sp. RCC1109 virus MpV1]
          Length = 485

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 29/205 (14%)

Query: 20  IEAFN--SASKTVKCLQLANGAVYYDEEKHWKE--------VHDEKIKALEVIIEKANAA 69
           I A N       ++  Q       Y +    +            +K++ L  +IE     
Sbjct: 264 INAKNMIILECLLRARQAMIWPQMYLDGVAKQNETQAEKWVGRSKKMETLFDMIESHPNE 323

Query: 70  PIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKI-PLLFAHPASCGH 121
             ++   F  ++  +Q                ++    I+ + + +   +      S G 
Sbjct: 324 KSLIFCQFRGEMNHIQSQLKCPTFRIDGSVPKEERVKQIEGFKKAQSGAVFIIQIKSGGQ 383

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-----TI 176
           GLNLQ     +   +  W+            + R  + G  +AV+V  LI +      ++
Sbjct: 384 GLNLQE-ATRVYITAPSWNPATEL-----QAIGRAHRTGQTKAVYVKKLIYKECPRFVSV 437

Query: 177 DELVLQRLRTKSTIQDLLLNALKKE 201
           +E ++     KS +   +LN  + E
Sbjct: 438 EEEMMALQGHKSIVCSKVLNDERIE 462


>gi|154283191|ref|XP_001542391.1| hypothetical protein HCAG_02562 [Ajellomyces capsulatus NAm1]
 gi|150410571|gb|EDN05959.1| hypothetical protein HCAG_02562 [Ajellomyces capsulatus NAm1]
          Length = 1128

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             G GLNL    N +     WW      Q I+R+      + G  + V V   I +++I+ 
Sbjct: 939  GGVGLNLTA-ANQVFMMDPWWSFATEAQAIDRV-----HRMGQLKDVTVTRFIVKDSIEG 992

Query: 179  LVLQRLRTKSTIQDLL 194
             +L+    K  I   L
Sbjct: 993  RILRIQERKMMIAGSL 1008


>gi|253699642|ref|YP_003020831.1| SNF2-related protein [Geobacter sp. M21]
 gi|251774492|gb|ACT17073.1| SNF2-related protein [Geobacter sp. M21]
          Length = 1248

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 58/227 (25%), Gaps = 38/227 (16%)

Query: 2    KQYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DE 54
            + Y +                  N         Q+        +     E          
Sbjct: 865  QLYGQAVANYKAGKSGDPGATKMNHLGLLQYIRQVCTDPRPLGQATSEHESFEVAASRSP 924

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ--------------------GRTL 94
            K+  L  ++++        A  F       +                             
Sbjct: 925  KLAWLYGVLKEIQG-KGEKAIVFTELRGLQRMLKIYIAERLGVVPEIINGDTSTATANAQ 983

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +     +        ++   P + G G+N+Q   N ++ ++  W+  +     E     
Sbjct: 984  SRQKKIKEYQERPGFGVIILSPLAVGFGVNIQA-ANHVIHYTRMWNPAK-----EDQATD 1037

Query: 155  RQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V+VY  +  +    T D  +   L  K  I   +LN 
Sbjct: 1038 RAYRIGQTKDVYVYTPVVVSPEFTTFDAKLDALLEWKRGISADMLNG 1084


>gi|162448815|ref|YP_001611182.1| helicase, putative [Sorangium cellulosum 'So ce 56']
 gi|161159397|emb|CAN90702.1| helicase, putative [Sorangium cellulosum 'So ce 56']
          Length = 420

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 17/146 (11%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           + +A+   ++V   F   L+ ++           AF  G +       +  + +G+  +L
Sbjct: 217 LVRAHDEQVLVFTRFRDTLSTIEAALREAGVEPVAFHGGLSAADKRAALSAFRDGRARVL 276

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                + G G NL +  ++LV F L ++    +Q I R+      + G +  V VY L A
Sbjct: 277 V-STDAGGEGHNLHH-CHVLVNFDLPYNPMLIEQRIGRL-----HRMGQREEVRVYNLCA 329

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
           + T +E VL  L  +  + +L++  +
Sbjct: 330 RGTAEERVLDLLDRRLHLFELVVGEM 355


>gi|158296666|ref|XP_317019.4| AGAP008426-PA [Anopheles gambiae str. PEST]
 gi|157014820|gb|EAA12838.4| AGAP008426-PA [Anopheles gambiae str. PEST]
          Length = 722

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++ +              +C  G+ L    ++++F  L W+             +R
Sbjct: 542 RGALVERFQSKATCRAAVLSLKACNAGITLTA-AHLVLFAELDWNPSTL-----AQAESR 595

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G    V V YL+A+ T D+++   L+ K      +
Sbjct: 596 AHRIGQADNVTVRYLLAKKTADDIIWTMLQRKQETLSRV 634


>gi|224009872|ref|XP_002293894.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970566|gb|EED88903.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 718

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 15/145 (10%)

Query: 52  HDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQ 102
              K++    ++++      ++V  H    +  L +AF               +     +
Sbjct: 354 SSFKLEPSVQLLKQYIMCEKVVVFAHHRQLIMDLVEAFGDSCVHIIGGMDAKSRAEAVQR 413

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             N+    L      + G GL L    + +VF  L W        I      R  + G +
Sbjct: 414 FQNDASCRLFIGSIRAAGVGLTLTASSH-VVFLELDWSPS-----IMTQAEDRCHRVGQQ 467

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK 187
            +V V Y + + ++DE + ++L  K
Sbjct: 468 DSVLVEYFVFKGSLDEWMARQLAEK 492


>gi|261417323|ref|YP_003251006.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373779|gb|ACX76524.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 861

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQ 102
             K+K ++ I+ +       ++V   F   + ++                        I 
Sbjct: 526 SGKLKRIKEIVRQAKFENRKVLVFSFFLETIKKVCAYLNDSCMEPITGAVPVSHRQEIID 585

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +       +L     + G GLN+Q   N+++                   ++R  + G 
Sbjct: 586 AFEKSPAGTVLPLQINAGGLGLNIQA-ANVVILCEPQLKPSAEM-----QAISRAYRMGQ 639

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V VY L+  ++IDE +   L+ K  + +   +
Sbjct: 640 VRNVLVYRLLMLDSIDEKINTLLKFKKQVFNTFAD 674


>gi|222475692|ref|YP_002564213.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454063|gb|ACM58327.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 584

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 18/165 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRT 93
           E+       +  +  +E   E      +IV   F +   +             AF  G +
Sbjct: 358 EDIDTVTKQERLLDIVEEARETVEMGRVIVFTQFRATQRQVLDRLASEGYTVHAFHGGHS 417

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++++ E     +     +   G NLQ+  N+LV   L W+    +Q I R+  
Sbjct: 418 SSEKEQIVEDFEEEGG--ILVSTDAMSEGRNLQF-CNLLVNLGLSWNPMRMEQRIGRV-- 472

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
               + G KR VFV+ +  + T++E VL+RL  K  +    +  L
Sbjct: 473 ---HRIGQKRDVFVFNMALKGTVEEYVLERLYHKIDLFQQSVGEL 514


>gi|15241352|ref|NP_197542.1| CHR42 (chromatin remodeling 42); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|332005458|gb|AED92841.1| chromatin remodeling 42 [Arabidopsis thaliana]
          Length = 1261

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EKI      I        +    F     R          L +   
Sbjct: 1065 VMFVLNLIFRVVKREKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGR 1124

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++ E      +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1125 VIDKFEEPGNPSRVLLASITACAEGISLTA-ASRVIMLDSEWNPSKT-----KQAIARAF 1178

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+++ T++E   +R   K  +  ++ + 
Sbjct: 1179 RPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIFSE 1218


>gi|147858107|emb|CAN81392.1| hypothetical protein VITISV_043256 [Vitis vinifera]
          Length = 210

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +     +   + R  + G    V +Y LI + TI+E ++Q  + K  ++ L++  LK +
Sbjct: 52  SDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQ 111

Query: 202 TIH 204
            I+
Sbjct: 112 NIN 114


>gi|12855912|dbj|BAB30499.1| unnamed protein product [Mus musculus]
          Length = 530

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                        +    + ++ 
Sbjct: 330 VKDYIKMLLQNDSLKFLVFAHHLSMLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQ 389

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 390 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 443

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 444 VNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKL 481


>gi|37522310|ref|NP_925687.1| hypothetical protein gll2741 [Gloeobacter violaceus PCC 7421]
 gi|35213310|dbj|BAC90682.1| gll2741 [Gloeobacter violaceus PCC 7421]
          Length = 1066

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 15/183 (8%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
           L   L      A  +  +  K  Q     +   +    +E     +   E I  +  A  
Sbjct: 470 LVEALDNLVHLAGEALEQDPKLDQ----FIQVIQAIRAEEPRANVLVYTEYIDTQQAAVR 525

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
            +    F   L    +   +         T + +      +L     +   GLNL    +
Sbjct: 526 ALKQAGFRDVLTMSGEDDEKM-----RTGTTERFRSEDGLILV-STDAAAEGLNLHQRCH 579

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            L+   L ++    +Q   RI      + G +    V YL  + T +E +L RL  K   
Sbjct: 580 QLIHLELPFNPNRLEQRNGRID-----RYGQQHDPIVRYLFLRGTFEERILLRLIVKYEK 634

Query: 191 QDL 193
           Q  
Sbjct: 635 QRA 637


>gi|167395605|ref|XP_001741658.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
           SAW760]
 gi|165893723|gb|EDR21860.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
           dispar SAW760]
          Length = 837

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 18/164 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RL 84
           + N  +   +E+         +    + + +     +++   +   L            L
Sbjct: 436 IDNEIIKMVDEETINLWPKLTVLLKLLKMCEKTNEKVLLFSQYQRTLDSISDLLQSKDIL 495

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                           ++ +N      +L         GLN+  G + +V F   W    
Sbjct: 496 FLRIDGDLDDGLRKERLRRFNHMSSWGVLLMTIRVGACGLNIT-GASRVVIFDEGWS--- 551

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               I    V R  + G K+ V  Y +++  T++E + +R   K
Sbjct: 552 ---TIGNQAVDRAYRIGQKKDVVTYRIVSCGTVEEKMYRRQVHK 592


>gi|89097278|ref|ZP_01170168.1| helicase, SNF2 family protein [Bacillus sp. NRRL B-14911]
 gi|89088101|gb|EAR67212.1| helicase, SNF2 family protein [Bacillus sp. NRRL B-14911]
          Length = 847

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 89  PQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G   ++    I ++  N  +I +L ++P + G  ++L    +  ++F   ++L    Q
Sbjct: 709 YGGTPREEREDIINKFKENTNEIQVLVSNPNTLGESVSLHTIAHDAIYFEYNYNLTFMLQ 768

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             +RI      ++   R    YYL+        N ID+ +  RL  K       ++ 
Sbjct: 769 SRDRIHRLGLPESQSTR---YYYLMTVSDREIYNFIDQKIYDRLAEKEMRMKEAIDG 822


>gi|302765060|ref|XP_002965951.1| hypothetical protein SELMODRAFT_60241 [Selaginella moellendorffii]
 gi|300166765|gb|EFJ33371.1| hypothetical protein SELMODRAFT_60241 [Selaginella moellendorffii]
          Length = 1108

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 77/247 (31%), Gaps = 62/247 (25%)

Query: 8   QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL------ 59
           + E      G+      +   +K ++  ++ N   Y +   H +  ++  ++        
Sbjct: 298 EEERVASGNGKRQARAYAPLQNKCMELRKVCNHP-YLNYPPHCRLFNENMVRMCGKLWIL 356

Query: 60  --EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG 107
              +I  + +   +++       L  L+        + +              I ++N  
Sbjct: 357 DRILIKLQRSGHRVLLFSTMTKLLDILEDYLQWRGLIYRRIDGTTPLDSRETAIVDFNAP 416

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +  +      + G GLNLQ   + +V +    + +      E   V R  + G K  V
Sbjct: 417 GSQCFIFLLSIRAAGRGLNLQT-ADTVVIYDPDPNPKN-----EEQAVARAHRIGQKSEV 470

Query: 166 FVYYL--IAQ------------------------------NTIDELVL-QRLRTKSTIQD 192
            V Y+  + +                               +++ LV     + K  + D
Sbjct: 471 KVIYMEAVVESFTSYQMEDELRNGGSLDVDDDMAGKDRYMGSVESLVRNNIQQHKIDMAD 530

Query: 193 LLLNALK 199
            ++NA +
Sbjct: 531 EVINAGR 537


>gi|73994977|ref|XP_543352.2| PREDICTED: similar to E1A binding protein p400 (p400 kDa
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein) [Canis familiaris]
          Length = 3119

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y    R L   L+           +                E    +    K++AL ++
Sbjct: 1844 LYSHRMRILRHCLKEHIAPYAQQLQRMTALR------SLRFPELRLVQFDSGKLEALAIL 1897

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                    +    ++ +N + +I
Sbjct: 1898 LQKLKSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRI 1957

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G++L    + +VF+    +      +++        + G ++ V +Y 
Sbjct: 1958 FCAILSTHSRATGVSL-VEADAVVFYDNDLNP-----VMDAKAQEWCERIGRRKDVHIYR 2011

Query: 170  LIAQNTIDELVLQ 182
            L++ N+I+E +L+
Sbjct: 2012 LVSGNSIEEKLLK 2024


>gi|302325414|gb|ADL24615.1| SNF2/helicase domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 864

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------KDPCTIQ 102
             K+K ++ I+ +       ++V   F   + ++                        I 
Sbjct: 529 SGKLKRIKEIVRQAKFENRKVLVFSFFLETIKKVCAYLNDSCMEPITGAVPVSHRQEIID 588

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +       +L     + G GLN+Q   N+++                   ++R  + G 
Sbjct: 589 AFEKSPAGTVLPLQINAGGLGLNIQA-ANVVILCEPQLKPSAEM-----QAISRAYRMGQ 642

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R V VY L+  ++IDE +   L+ K  + +   +
Sbjct: 643 VRNVLVYRLLMLDSIDEKINTLLKFKKQVFNTFAD 677


>gi|157870139|ref|XP_001683620.1| helicase-like protein  [Leishmania major strain Friedlin]
 gi|68126686|emb|CAJ04698.1| putative helicase-like protein [Leishmania major strain Friedlin]
          Length = 1274

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                       +  +    +++++    P L      + G G+ +      ++     +
Sbjct: 859 RPIRYCRLDGSHSAAQRAAMLEDFDRPDGPALFLLSTKAGGVGITVTA-ATRVILVDTSF 917

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLN-- 196
           +  + Q       + R  + G  R V+VY L+   T++  +  Q+L  K  +   ++   
Sbjct: 918 NPADDQ-----QAIGRAYRYGQTRPVYVYRLMCYPTLEYSIFVQKLA-KEWLFKTVIEES 971

Query: 197 ALKKETI 203
           ++K++ +
Sbjct: 972 SVKRDGL 978


>gi|15229135|ref|NP_189853.1| CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding /
            helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|7523392|emb|CAB86450.1| putative protein [Arabidopsis thaliana]
          Length = 1256

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EKI      I        +    F     R          L +   
Sbjct: 1059 VMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGR 1118

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++ E  G+  +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1119 VIDKFEEPGGQSRVLLASITACAEGISLTA-ASRVIMLDSEWNPSKT-----KQAIARAF 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+++ T++E   +R   K  +  ++ + 
Sbjct: 1173 RPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSE 1212


>gi|48696652|ref|YP_024431.1| superfamily II DNA/RNA helicase [Vibrio phage VP2]
 gi|40950050|gb|AAR97641.1| superfamily II DNA/RNA helicase [Vibrio phage VP2]
          Length = 472

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----HDEKIK-A 58
            + +     +  G+ +       +  +  Q+  G   + ++    +V      + K+   
Sbjct: 254 KELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKMDAM 313

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARL------------QKAFPQGRTLDKDPCTIQEWNE 106
           LE I +    A +I+   F +++ ++               +  G +      +I  + +
Sbjct: 314 LEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQD 373

Query: 107 --GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                    A+  + G G+ L        ++S  + LE+  Q  +R       + G +  
Sbjct: 374 SSDPSRFFVANQQTAGMGITLT-IATFAYYYSNSFSLEQRLQSEDR-----NHRKGQRNV 427

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                +  +   D +V + L++K  +  L+   L++  
Sbjct: 428 CTYIDIWCKADADLMVGRALKSKKDLAVLVDEELQRRI 465


>gi|117928024|ref|YP_872575.1| helicase domain-containing protein [Acidothermus cellulolyticus
           11B]
 gi|117648487|gb|ABK52589.1| helicase domain protein [Acidothermus cellulolyticus 11B]
          Length = 933

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + Y F ++             L++       + +     +     + G GLNLQ+  +++
Sbjct: 494 MLYEFLTERGFEVVCLNGSMDLEERKRVQDTFAKDAR--ILISTDAGGEGLNLQF-CHVV 550

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + + + W+    +Q I R+      + G    V     + +++++  V + L  K  + 
Sbjct: 551 INYDIPWNPMRLEQRIGRVD-----RIGQTHTVRAINFVFEDSVEHRVCEVLEEKLAVI 604


>gi|224127712|ref|XP_002320143.1| hypothetical protein POPTRDRAFT_244585 [Populus trichocarpa]
 gi|222860916|gb|EEE98458.1| hypothetical protein POPTRDRAFT_244585 [Populus trichocarpa]
          Length = 434

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIEKAN--AAPIIVAYHFNSDLA 82
           ++  +  N  +      +            K+  L+ I+ K       +++       L 
Sbjct: 200 MELRKTCNHPLLNYPYFNDLSKDFLVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 259

Query: 83  RLQKAFPQGRTLDKD----------PCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGN 130
            L++     R + +              I ++N  +    +      + G GLNLQ   +
Sbjct: 260 ILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-AD 318

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++ +    + +      E   V R  + G  R V V Y+ A + I + +    + K  +
Sbjct: 319 TVIIYDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVSLIRKNI---QQYKIDM 370

Query: 191 QDLLLNALK 199
            D ++NA +
Sbjct: 371 ADEVINAGR 379


>gi|70943765|ref|XP_741890.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520554|emb|CAH80365.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 644

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +L     + G GLNL    + +    LWW+       IE     R  + G  + V
Sbjct: 530 NKSGKVLLCSLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERIHRIGQLKDV 583

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y  + + T++E +LQ  ++K    +  L
Sbjct: 584 NIYKFVLEKTVEERILQIHQSKQYTANQCL 613


>gi|322825950|gb|EFZ30762.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 914

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 21/149 (14%)

Query: 64  EKANAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
              +   +I+  H    +                            +       +     
Sbjct: 486 MVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTN 545

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + 
Sbjct: 546 CHVAVLSMHSCGVGHNLT-CATMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIK 599

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           YL+A+ T D ++   L+TK  +   +L  
Sbjct: 600 YLLAEGTSDSVIWPMLQTKLNVTHAVLED 628


>gi|330930186|ref|XP_003302929.1| hypothetical protein PTT_14926 [Pyrenophora teres f. teres 0-1]
 gi|311321396|gb|EFQ88965.1| hypothetical protein PTT_14926 [Pyrenophora teres f. teres 0-1]
          Length = 1159

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEG 107
             +    ++     IIV   F + +              + +    +L K    I  + + 
Sbjct: 1001 QILNWRKEKGDVKIIVYTQFLAMIRILKRVFAKEGWRCEEYHGKMSLKKRDDAIAAFADT 1060

Query: 108  KIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              P +L A     G GLNL    + ++    WW+    Q         R  + G     F
Sbjct: 1061 AGPAILLASLRCGGLGLNLT-MASKVIMIDPWWNSASEQ-----QAFCRVFRIGQNEKTF 1114

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  L   NT+DE +++    K    D+++  
Sbjct: 1115 MSRLCVTNTVDEQLVRMQERKQEEIDVVMEE 1145


>gi|71648872|ref|XP_813216.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878080|gb|EAN91365.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 744

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 21/149 (14%)

Query: 64  EKANAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
              +   +I+  H    +                            +       +     
Sbjct: 316 MVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTN 375

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + 
Sbjct: 376 CHVAVLSMHSCGVGHNLT-CATMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIK 429

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           YL+A+ T D ++   L+TK  +   +L  
Sbjct: 430 YLLAEGTSDSVIWPMLQTKLNVTHAVLED 458


>gi|71653795|ref|XP_815529.1| DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70880590|gb|EAN93678.1| DNA helicase, putative [Trypanosoma cruzi]
          Length = 938

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 21/149 (14%)

Query: 64  EKANAAPIIVAYHFNSDL--------------ARLQKAFPQGRTLDKDPCTIQEWN-EGK 108
              +   +I+  H    +                            +       +     
Sbjct: 510 MVESGQKVIIFAHHQCMMEAIREAVESVQPKQPLDYIYITGETPAAQREALTTHFRTSTN 569

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      SCG G NL     ++VF  L W+   H Q  +R+      + G   A  + 
Sbjct: 570 CHVAVLSMHSCGVGHNLT-CATMVVFAELDWNPSTHLQCEDRV-----HRMGQSSACVIK 623

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           YL+A+ T D ++   L+TK  +   +L  
Sbjct: 624 YLLAEGTSDSVIWPMLQTKLNVTHAVLED 652


>gi|322499423|emb|CBZ34496.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1273

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                       +  +    +++++    P L      + G G+ +      ++     +
Sbjct: 858 RRIRYCRLDGSHSAAQRAAMLEDFDRPDGPELFLLSTKAGGVGITVTA-ATRVILVDTSF 916

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLN-- 196
           +  + Q       + R  + G  R V+VY L+   T++  +  Q+L  K  +   ++   
Sbjct: 917 NPADDQ-----QAIGRAYRYGQTRPVYVYRLMCYPTLEYSIFVQKLA-KEWLFKTVIEES 970

Query: 197 ALKKETI 203
           ++K++ +
Sbjct: 971 SVKRDGL 977


>gi|126665998|ref|ZP_01736978.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
 gi|126629320|gb|EAZ99937.1| helicase/SNF2 family domain protein [Marinobacter sp. ELB17]
          Length = 942

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNEGK 108
            I+   +   +++   + +  A +++                     +    I  + EG 
Sbjct: 527 KILTPNSKEKVLIFTEYRATQAYIREILEKRFGEGSVELINGSMPHAQRRDAIARFEEGA 586

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                    + G G+NLQ   +I+V + L W+     Q I R+      + G K+ V V+
Sbjct: 587 N--FLVSTEAGGEGINLQRKCHIMVNYDLPWNPMRLVQRIGRL-----YRYGQKKRVVVF 639

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            L + +T DE V++ + T+    + +++ L
Sbjct: 640 NLHSPDTADEQVMELMYTRI---ERVVDDL 666


>gi|327396325|dbj|BAK13747.1| hypothetical protein PAJ_3668 [Pantoea ananatis AJ13355]
          Length = 1042

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 61/197 (30%), Gaps = 32/197 (16%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIE--KANAAPIIVAYHFNSDL 81
           +         ++          +   +    ++ A   I+   KA    ++V        
Sbjct: 796 ALKMLQHIRGVSVHPAMEMSGDNQSFIDASARLNACFDILHRIKAKGERVLVFIEHRKMQ 855

Query: 82  AR------------LQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLN 124
            R                      + K    ++ +      +G   LL   P + G GL 
Sbjct: 856 FRFMELARQEFGLEHIDHINGDTPIQKRQAIVRRFQHHLEQDGGFDLLVLGPKAAGTGLT 915

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QNTIDE 178
           L      ++  S WW+    +Q  +R+      + G +  V ++  +A      +++ D 
Sbjct: 916 LTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRIGQQHPVQIHMPMAIHAGYQEHSFDC 969

Query: 179 LVLQRLRTKSTIQDLLL 195
           L+   +  K ++    L
Sbjct: 970 LLQGLMSRKRSLARAAL 986


>gi|118349265|ref|XP_001033509.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89287858|gb|EAR85846.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1285

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFN----------SDLARLQKAFPQG 91
            E++        K   +  IIE+       I++   ++           DL          
Sbjct: 875  EQQQIDYKKLAKTDRVVDIIEQVQKKGEKILLFTQWHDSIQRLKKRFEDLDIGYCELHGK 934

Query: 92   RTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T+ +    + ++       ++     +   GLNL    N ++    WW+       IE 
Sbjct: 935  MTIKQRAKQVHDFYRLPSKTVMVLSLMAGCVGLNLT-CANNVIIMDPWWNGA-----IED 988

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQ--NTIDELVLQRLRTKSTIQDLLLN 196
              V R  + G K+ V VY  + +  ++ID  + +  + K  + + +L+
Sbjct: 989  QAVDRVYRIGQKKDVNVYRCLIKHDDSIDLRISELCKKKEALCNKILS 1036


>gi|322492699|emb|CBZ27976.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1872

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 23/145 (15%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN 105
            ++ +E I        ++V   + + L                     +L +    ++   
Sbjct: 1675 LEVVEEIWRTQPDDGVLVFSKYPTFLKLAHDAVAGQGYAPHMVCGASSLAQRQRAMRAMQ 1734

Query: 106  EGKI-------PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                        +LF    S   GLNL +  N ++F     +    Q       V R  +
Sbjct: 1735 PPSGDSVLSQRRILFVTSRSANAGLNLTF-ANHVIFLEPNLNPAIEQ-----QAVGRVHR 1788

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQR 183
             G  + V V++  A +TI+E++ +R
Sbjct: 1789 FGQLKQVIVHHFFAPHTIEEVIYRR 1813


>gi|260549505|ref|ZP_05823723.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
 gi|260407298|gb|EEX00773.1| conserved hypothetical protein [Acinetobacter sp. RUH2624]
          Length = 72

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 58/69 (84%)

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +FFS WWDLE++QQ+IERIG TRQ QAG+ R V++Y++IA++T+DE+V++R  +K  +QD
Sbjct: 1   MFFSHWWDLEQYQQIIERIGPTRQAQAGYDRPVYIYHIIAKDTMDEIVMERRESKREVQD 60

Query: 193 LLLNALKKE 201
           LL+ A+KK 
Sbjct: 61  LLMEAMKKR 69


>gi|303312659|ref|XP_003066341.1| Helicase conserved C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106003|gb|EER24196.1| Helicase conserved C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 458

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++     +   +  I +L +   + G GL+L       +   LWW+    Q      
Sbjct: 323 PPSERHRDIEEFRTDPSIRVLISSLKAGGTGLSLT-MAEKCILIDLWWNEAMEQ-----Q 376

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G K+ V +  +  +N+ID+ +      KS+  +  + 
Sbjct: 377 AFCRLFRYGQKKEVEIVRITVKNSIDDRIQLIQNAKSSNIEKTMG 421


>gi|299472392|emb|CBN77580.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 991

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 62  IIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK-DPCTIQEWN-EGKI 109
           + ++     I+V  H  + L           R++     GRT  K     +  +     +
Sbjct: 574 LADEMTGGKILVFAHHRNVLDALEQSVVRTGRVEYIRIDGRTKPKDRQDLVDTFQSNPSV 633

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G G+ L    + +VF  L+W   +           R  + G    V V Y
Sbjct: 634 RVALLGLTAAGIGITLTA-ASRVVFAELYWTPAQLL-----QAEDRCHRIGQATVVKVQY 687

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           L+A+ ++D+ +   ++ K  +   ++   + E  H+
Sbjct: 688 LVAKGSLDDALWPLIQEKIKLLGEMVEG-EGEANHM 722


>gi|75214627|gb|ABA18099.1| SNF2 domain-containing protein [Olimarabidopsis pumila]
          Length = 1256

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V  EKI      I        +    F     R          L +   
Sbjct: 1059 VMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGR 1118

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++ E  G+  +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1119 VIDKFEEPGGQSRVLLASITACAEGISLTA-ASRVIMLDSEWNPSKT-----KQAIARAF 1172

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+++ T++E   +R   K  +  ++ + 
Sbjct: 1173 RPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSE 1212


>gi|74217178|dbj|BAC34934.2| unnamed protein product [Mus musculus]
          Length = 445

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               ++++ +   W+ +     ++   + R  + G  + V V+  I  NT++E +++R  
Sbjct: 5   LATADVVILYDSDWNPQ-----VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 59

Query: 186 TKSTIQDLLLNALK 199
            K  +  +++   +
Sbjct: 60  MKLRLDSIVIQQGR 73


>gi|320528040|ref|ZP_08029206.1| protein, SNF2 family [Solobacterium moorei F0204]
 gi|320131666|gb|EFW24230.1| protein, SNF2 family [Solobacterium moorei F0204]
          Length = 706

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARL--------QKAFP 89
                   W  ++  K + +  +  +  +    +I+  +F   L+ +             
Sbjct: 517 FMAMRRVSWNSLNSTKAERMTELCLQALSEGRKVIIFSYFLDTLSFVSDLLLGKALPVIS 576

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
              +L+K    + +++E    +L     + G GLN+Q    I++         +      
Sbjct: 577 GKLSLEKRQDILHQFDEPIARVLPIQIHAGGIGLNIQT-AEIVILCEPQLKPSDEM---- 631

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              ++R  + G    VFVY L++ +TIDE +++RL  K  I D   + 
Sbjct: 632 -QAISRVYRMGQVNHVFVYRLLSADTIDETLVKRLHEKQNIFDQFADE 678


>gi|297711711|ref|XP_002832469.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like,
           partial [Pongo abelii]
          Length = 90

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+NL    + ++F    ++ +      +     R  + G  ++V V  LI ++T++E+
Sbjct: 1   GVGMNLTA-ADTVIFVDSDFNPQN-----DLQAAARAHRIGQNKSVKVIRLIGRDTVEEI 54

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V ++  +K  + ++++  
Sbjct: 55  VYRKAASKLQLTNMIIEG 72


>gi|224101971|ref|XP_002312496.1| hypothetical protein POPTRDRAFT_657056 [Populus trichocarpa]
 gi|222852316|gb|EEE89863.1| hypothetical protein POPTRDRAFT_657056 [Populus trichocarpa]
          Length = 87

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +F  L ++ +     I+R       + G  + V +Y ++ + T+DE V +  + K  +
Sbjct: 1   YCIFPDLDFNPQ-----IDRQVEDHCHRIGHTKPVTIYRMVTRGTVDETVDEMAKWKLVL 55

Query: 191 QDLLLNA 197
              +L++
Sbjct: 56  DAAVLDS 62


>gi|47211680|emb|CAF92844.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 295

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 67/203 (33%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN 105
           +  +  I +      +++  ++   L   +K                ++ K    ++ +N
Sbjct: 4   LDYILAITKTTTDDKVVLVSNYTQTLDLFEKLCRSRRYSYVRLDGTMSIKKRARMVERFN 63

Query: 106 EGKIP---------------------------LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           E  +                            +      + G GLNL  G N LV F   
Sbjct: 64  EASVSGGAGSTRPPGSGCSWASPLRLWQSPEFIFMLSSKAGGCGLNL-IGANRLVMFDPD 122

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------------------------QN 174
           W+        +   + R  + G ++  ++Y L+A                          
Sbjct: 123 WNPAN-----DEQAMARVWRDGQRKTCYIYRLLAVRAAQTRCRRRRCAAVTGVCVCPQTG 177

Query: 175 TIDELVLQRLRTKSTIQDLLLNA 197
           TI+E +LQR   K  +   +++ 
Sbjct: 178 TIEEKILQRQAHKKALSSCVVDE 200


>gi|312213815|emb|CBX93817.1| similar to DNA repair protein rad5 [Leptosphaeria maculans]
          Length = 1207

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 7/152 (4%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLF 113
            K   +++II     A I +      +     + +  G TL      I  +  +  I ++ 
Sbjct: 1016 KNPQVKIIIYTQFLAMISILARICHNEKWKIEQYHGGMTLHARDKAIASFAEDPDIRIML 1075

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            A     G GLNL    + ++    WW+    Q         R  + G      +  L   
Sbjct: 1076 ASLRCGGLGLNLT-MASKVIMMDPWWNSASEQ-----QAFCRVFRIGQLEETSMSRLCVN 1129

Query: 174  NTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            NT+D+ ++     K      ++    K+   +
Sbjct: 1130 NTVDKQLIAMQERKDAEIKSVMENDGKKVSRM 1161


>gi|261202002|ref|XP_002628215.1| DNA repair helicase [Ajellomyces dermatitidis SLH14081]
 gi|239590312|gb|EEQ72893.1| DNA repair helicase [Ajellomyces dermatitidis SLH14081]
          Length = 275

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              Q     +D        +    +L     + G G++L    N  +   LWW+    QQ
Sbjct: 8   HTGQMPLRARDKHIRTFSKDPAARILICSLRTAGIGVDLTAT-NKCILVDLWWNEAMEQQ 66

Query: 147 MIE---RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                     +R  +   +R V    ++ QN+ID+ +      K+   + ++ +
Sbjct: 67  ACTCTLITAFSRIFRIRQQRNVEFVRIVVQNSIDDRIQLIQNEKTDGIEQVIGS 120


>gi|119490437|ref|ZP_01622898.1| hypothetical protein L8106_27294 [Lyngbya sp. PCC 8106]
 gi|119453908|gb|EAW35063.1| hypothetical protein L8106_27294 [Lyngbya sp. PCC 8106]
          Length = 1140

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 20/204 (9%)

Query: 5   HKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + +         E IE       +  + ++L    +    E+   E+ +   ++    +
Sbjct: 428 DELENVAVESTIAEKIEQLREELQELKRLVKLTQETIELGTERKLNELQNLLKRSEFDEL 487

Query: 64  EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            +     +++       L  L+               G  +       + +       + 
Sbjct: 488 SEGEG-RLLIFTEHRDTLQYLKQNLQQWGYSTCEIHGGMNVIDRKTAQKNFQ--FNKQIC 544

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G G+NLQ+   ++V + + W+    +Q + RI      + G KR V+++  +A 
Sbjct: 545 IATEAAGEGINLQF-CRLMVNYDIPWNPNRLEQRMGRI-----HRIGQKRDVYIFNFVAV 598

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
           NT++  VL++L  K       +N 
Sbjct: 599 NTVEGRVLEKLLKKLDEIRAAMND 622


>gi|149730550|ref|XP_001489638.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Equus
           caballus]
          Length = 1072

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 321 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHL 380

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 + +  +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 381 VNQFQKDPETRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 434

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA+ T+D L+   L  K+ +    LN  K++ 
Sbjct: 435 GQCSSVNIHYLIAKGTLDTLMWGMLNRKAQVTGSTLNGRKEQL 477


>gi|301061086|ref|ZP_07201883.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
 gi|300444880|gb|EFK08848.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
          Length = 932

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F S+             +D+     + +   +  +L     + G GLNLQ+  ++++ + 
Sbjct: 497 FLSERGFPVVCLNGSMDMDERQKVQESF-AQEARVLV-STDAGGEGLNLQF-CHVVINYD 553

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + W+    +Q I R+      + G    V     + +++++  V + L  K  + 
Sbjct: 554 IPWNPMRLEQRIGRVD-----RIGQTHVVRAVNFVFEDSVEHRVREVLEEKLAVI 603


>gi|67587278|ref|XP_665245.1| DNA helicase [Cryptosporidium hominis TU502]
 gi|54655812|gb|EAL35016.1| DNA helicase [Cryptosporidium hominis]
          Length = 405

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
           Y DE+      H   + A+E ++ K           F        +   +     ++   
Sbjct: 243 YNDEKYVIFGHHHVMLDAIESVLLKKRKTACNSGGPF-----LFIRIDGKTPGNKREEYV 297

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N     +      +CG GLNL   G  ++F  L+W      Q  +R          
Sbjct: 298 KEFQNNENCKVALLSITACGQGLNLTSAGT-VIFAELYWVPGTMLQAEDRCHRI----GT 352

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + ++YLIA+ T+D+ +   L  K  I    L+ + +    +
Sbjct: 353 QYSCINIHYLIAEETLDDKMWGTLCRKQKIMASTLDGIDQRKNDI 397


>gi|149634326|ref|XP_001510803.1| PREDICTED: similar to mDomino [Ornithorhynchus anatinus]
          Length = 3040

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
            +  Q++   +    +    +    K++AL ++++K  +    +++       L  L+   
Sbjct: 1761 QLQQISAPYLLQFPDLRLVQYDSGKLEALAILLQKLKSEGRRVLILSQMILMLDILELFL 1820

Query: 89   PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                             +    ++ +N   +I        S   G+NL    + +VF+  
Sbjct: 1821 NFHFITFIRIDEYANSEQRQELMKSFNRNKRIFCAILSTHSRSTGINL-VEADTVVFYDN 1879

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +      +++        + G  + + +Y L++ N+++E +L+
Sbjct: 1880 DLNP-----VMDAKAQEWCERIGRCKDIHIYRLVSGNSVEEKLLK 1919


>gi|190352247|gb|ACE76519.1| Smarca4-like protein [Sus scrofa]
          Length = 244

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 95  DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +     +   
Sbjct: 5   EDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ-----DLQA 58

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             R  + G +  V V  L   N+++E  L   + K  +   ++ A
Sbjct: 59  QDRAHRIGQQNEVRVLRLCTVNSVEEKFLAAAKYKLNVDQKVIQA 103


>gi|157114821|ref|XP_001652438.1| hypothetical protein AaeL_AAEL006963 [Aedes aegypti]
 gi|108877144|gb|EAT41369.1| conserved hypothetical protein [Aedes aegypti]
          Length = 726

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 56  IKALEVIIEKANAAPIIVA-YHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLF 113
           +K  +  I  A+   ++ A   + S               D     ++++  +       
Sbjct: 518 LKEKQKFIIFAHHIKMLDAISKYLSKQKVDFIRIDGTTRSDLRSSLVEKFQTKDSCRAAV 577

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +C  G+ L     +++F  L W+             +R  + G +  V V YL+A+
Sbjct: 578 LSLKACNAGITLTA-AQLVMFAELDWNPSTL-----AQAESRAHRIGQEGTVIVRYLLAK 631

Query: 174 NTIDELVLQRLRTKSTIQDL 193
            T D+++   L+ K  I + 
Sbjct: 632 GTADDIIWTMLQKKQNILNK 651


>gi|260712905|ref|YP_003226960.1| SNF2-related protein [Zymomonas mobilis subsp. mobilis NCIB 11163]
 gi|258553431|gb|ACV76376.1| SNF2-related protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1034

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 39/221 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALE 60
           K Y   +++L      +  +  N+          +            K +    ++ A  
Sbjct: 769 KAYDDIRKKL------KEGQRGNALKLLHHIRTASVHPAVSSVSTDQKFIAQSGRLAATF 822

Query: 61  VIIEKAN--AAPIIVA-------YHF----NSDLARLQKAFPQGRTL-DKDPCTIQEWNE 106
            I+++        +V        Y F     S+    +     G+T   +    +  + +
Sbjct: 823 EILKRIKTRGERALVFIENLKMQYRFAALVRSEFGLERVEIINGQTSISERQKIVDRFQK 882

Query: 107 G------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                  K  LL   P + G GL L      ++  S WW+    +Q  +R+      + G
Sbjct: 883 HLKDSKNKFDLLILGPRAAGTGLTLTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRLG 936

Query: 161 FKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
             + V+VY  +A        + D L+   ++ K  +   +L
Sbjct: 937 QTQPVYVYVPMAIHPYYKSKSFDCLLHNLMQKKRRLAQNIL 977


>gi|114581132|ref|XP_515805.2| PREDICTED: zinc finger, RAN-binding domain containing 3 [Pan
           troglodytes]
          Length = 977

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 513 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 572

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 573 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 626

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 627 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 669


>gi|164658682|ref|XP_001730466.1| hypothetical protein MGL_2262 [Malassezia globosa CBS 7966]
 gi|159104362|gb|EDP43252.1| hypothetical protein MGL_2262 [Malassezia globosa CBS 7966]
          Length = 1014

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 33/177 (18%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQ 102
           +  ++ L  + +       ++   F   L  +Q    Q +             +    ++
Sbjct: 819 NALMQQLAELTKSDPTCKGVIFSQFTGFLNLIQAHLVQRQYAFVRLDGRTPQKEREHVLR 878

Query: 103 EW-NEGKIPLLFAHPASC----------------------GHGLNLQYGGNILVFFSLWW 139
            + NE     L     +                            L      +       
Sbjct: 879 TFANEPGPFFLLMSLRAGGVGLNCTFLCACTNTSSDSGESRVAHGLLVESKHVCCKKHET 938

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                  + E   + R  + G  RAV V+ L+  +TI++ +L+  R K  + D  L+
Sbjct: 939 KKTRLTPVREDQAIDRVHRLGQSRAVTVHRLLVNDTIEDRILEIQRHKKQLVDHALS 995


>gi|326389940|ref|ZP_08211503.1| helicase domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994000|gb|EGD52429.1| helicase domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 894

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 22/172 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           + + ++   +  + +K       +             F               ++++   
Sbjct: 459 IDFIDQLSMEYKNSQKFIVFTEFLATQQYLK-----DFLESKGYKVAILNGSMSMEERDA 513

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++E+       +     + G GLNLQ+  NI++ + L W+  + +Q I R+      + 
Sbjct: 514 SLKEFKN--YKDVLISTDAGGEGLNLQF-CNIVINYDLPWNPMKIEQRIGRVD-----RI 565

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI---------QDLLLNALKKET 202
           G +R V V   + ++TI+  V + L  K  +            +L++++ E 
Sbjct: 566 GQERDVLVLNFMLEDTIEFRVREVLEEKLRMIYEQFGVDKMGDILDSVQSEM 617


>gi|294933433|ref|XP_002780713.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890749|gb|EER12508.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 318

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              K P  ++++  +  I +      +C  GL L    +++VF  L+W     +      
Sbjct: 158 PQTKRPELVKKFQEDDDIRVAVLSITACSEGLTLTA-ASVVVFAELYWVPGTIE-----Q 211

Query: 152 GVTRQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G  ++ V ++YLIA+ + DE V   L+ K      +LN 
Sbjct: 212 AEARVHRIGQTKSCVDIHYLIARGSPDEAVYACLKRKKEDTSAILNG 258


>gi|154251630|ref|YP_001412454.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154253990|ref|YP_001414814.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155580|gb|ABS62797.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
 gi|154157940|gb|ABS65157.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 941

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            +  G + +A +      K  Q              +     K+      +         
Sbjct: 454 TEAAGTDAKAESLLELIYKLQQ-------------EEGDPALKVLVFTEFVPTQA----- 495

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +   +             G  ++    T+Q +  G   +L     + G GLNLQ+  +++
Sbjct: 496 MLADYLESRGFTVATLNGGMDMEARTRTLQTF-AGDARVLI-STDAGGEGLNLQF-CHVI 552

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-- 190
           V F + W+    +Q I R+      + G K  V     + ++T++  V Q L  K  +  
Sbjct: 553 VNFDMPWNPMRIEQRIGRVD-----RIGQKHVVRALNFVLEDTVEHRVRQVLEEKLAVIA 607

Query: 191 -------QDLLLNALKKETI 203
                     ++++ + E +
Sbjct: 608 EEFGVDKAADVMDSAEVEPV 627


>gi|20219037|gb|AAM15781.1|AC104428_2 Hypothetical protein [Oryza sativa Japonica Group]
 gi|108706352|gb|ABF94147.1| SNF2 domain-containing protein, putative, expressed [Oryza sativa
            Japonica Group]
          Length = 1197

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 22/156 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------------LQKAFPQGRTLDKD 97
              K     + + +A    ++V   +   L                        G T D+ 
Sbjct: 1004 KAKFVHNLLSLSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQR 1063

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N      + F    +CG G++L  G + +V   +  +       + R  + R 
Sbjct: 1064 EQAVHRFNNSPDARVFFGSIKACGEGISL-VGASRIVILDVHENPS-----VMRQAIGRA 1117

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  + V+ Y L+A ++ +E        K  +  
Sbjct: 1118 YRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSK 1153


>gi|86136229|ref|ZP_01054808.1| hypothetical protein MED193_18939 [Roseobacter sp. MED193]
 gi|85827103|gb|EAQ47299.1| hypothetical protein MED193_18939 [Roseobacter sp. MED193]
          Length = 1032

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 55/201 (27%), Gaps = 32/201 (15%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIE--KANAAPIIVAYHF 77
               +         ++         +    +    ++ A   I+   +      +V    
Sbjct: 782 TRGGALKMLHHIRSVSVHPDASSPTEDETYISMSARLLATMDILRGVQDRGERALVFIEH 841

Query: 78  NSDLARL------------QKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCG 120
                R                      + +    +  +      +    LL   P + G
Sbjct: 842 VKMQHRFIELTKREFGLPRVDLINGSTPIPRRQEIVNRFQRHLARDEGFDLLVLGPKAAG 901

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QN 174
            GL L      ++  S WW+    +Q  +R+      + G  + V V+  +A       N
Sbjct: 902 TGLTLTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRIGQSKPVTVHVPMAIHPGYQHN 955

Query: 175 TIDELVLQRLRTKSTIQDLLL 195
           + D L+   +  K  +    L
Sbjct: 956 SFDCLLHSLMARKRRLATSAL 976


>gi|302769926|ref|XP_002968382.1| hypothetical protein SELMODRAFT_60240 [Selaginella moellendorffii]
 gi|300164026|gb|EFJ30636.1| hypothetical protein SELMODRAFT_60240 [Selaginella moellendorffii]
          Length = 1107

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 77/247 (31%), Gaps = 62/247 (25%)

Query: 8   QRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL------ 59
           + E      G+      +   +K ++  ++ N   Y +   H +  ++  ++        
Sbjct: 298 EEERVASGNGKRQARAYAPLQNKCMELRKVCNHP-YLNYPPHCRLFNENMVRMCGKLWIL 356

Query: 60  --EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWNEG 107
              +I  + +   +++       L  L+        + +              I ++N  
Sbjct: 357 DRILIKLQRSGHRVLLFSTMTKLLDILEDYLQWRGLIYRRIDGTTPLDSRETAIVDFNAP 416

Query: 108 --KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             +  +      + G GLNLQ   + +V +    + +      E   V R  + G K  V
Sbjct: 417 GSQCFIFLLSIRAAGRGLNLQT-ADTVVIYDPDPNPKN-----EEQAVARAHRIGQKSEV 470

Query: 166 FVYYL--IAQ------------------------------NTIDELVL-QRLRTKSTIQD 192
            V Y+  + +                               +++ LV     + K  + D
Sbjct: 471 KVIYMEAVVESFTSYQMEDELRNGGSLDVDDDMAGKDRYMGSVESLVRNNIQQHKIDMAD 530

Query: 193 LLLNALK 199
            ++NA +
Sbjct: 531 EVINAGR 537


>gi|299531998|ref|ZP_07045397.1| helicase, putative [Comamonas testosteroni S44]
 gi|298720034|gb|EFI60992.1| helicase, putative [Comamonas testosteroni S44]
          Length = 188

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               I+ +       +L   P + G G+N+Q   N +V ++  W+  +     E     R
Sbjct: 29  RQKRIKAFQEAPGFGVLVLSPVAVGFGVNIQA-ANHVVHYTRTWNPAK-----EDQATDR 82

Query: 156 QRQAGFKRAVFVYYLI--AQN--TIDELVLQRLRTKSTIQDLLLNA 197
             ++G K+ V+VYY +  A++  T D  + + L  K  + + +LN 
Sbjct: 83  AYRSGQKKDVYVYYPVVWAEDFTTFDVKLDRLLTYKRGLAEDMLNG 128


>gi|295695496|ref|YP_003588734.1| SNF2-related protein [Bacillus tusciae DSM 2912]
 gi|295411098|gb|ADG05590.1| SNF2-related protein [Bacillus tusciae DSM 2912]
          Length = 688

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQ 102
             K+  L  I+       +IV   + +    L +           F  G T  +    + 
Sbjct: 482 SAKVAELIRILSAF-GDKMIVFTKYRATQEILVRALRRRDFRVAEFHGGLTRKEKDREVA 540

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            + E     +       G G NLQ+  N +V F L W+    +Q I RI      + G  
Sbjct: 541 YFREEAD--VLVSTEVGGEGRNLQF-CNGMVNFDLPWNPMAIEQRIGRI-----HRIGQT 592

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R VFVY L A +T++  +L  L  K  + +L++  +
Sbjct: 593 RDVFVYNLAALHTLEHHMLDVLDRKINLFELVVGEV 628


>gi|83765202|dbj|BAE55345.1| unnamed protein product [Aspergillus oryzae]
          Length = 1003

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
             I+   +   L  + K     R   +              +  ++    +P+L     +
Sbjct: 851 KSIIFSCWTRTLDLIAKHLKASRIEFERIDGKTSTSQRQKILDRFDGTRTVPVLIMTTGT 910

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLNLQ   N +      W+       +E   + R  + G ++ V V     +N+I+E
Sbjct: 911 GAFGLNLQSV-NRVFIVEPQWNPS-----VESQAIARAIRLGQEQQVLVTRYRVENSIEE 964

Query: 179 LVLQRLRTKSTIQDL 193
            +  +   K  I  +
Sbjct: 965 AMCSQQTHKLKISQM 979


>gi|322492158|emb|CBZ27432.1| putative helicase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1261

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                       +  +    +++++    P L      + G G+ +      ++     +
Sbjct: 859 RPIRYCRLDGSHSAAQRAAMLEDFDRSHGPDLFLLSTKAGGVGITVTA-ATRVILVDTSF 917

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLN-- 196
           +  + Q       + R  + G  R V+VY L+   T++  +  Q+L  K  +   ++   
Sbjct: 918 NPADDQ-----QAIGRAYRYGQTRPVYVYRLMCYPTLEYSIFVQKLA-KEWLFKTVIEES 971

Query: 197 ALKKETI 203
           ++K++ +
Sbjct: 972 SVKRDGL 978


>gi|307564893|ref|ZP_07627418.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346429|gb|EFN91741.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 3762

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%)

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               G T+ K      + N G++ ++     + G G+N+Q   + L+         ++ Q 
Sbjct: 1913 MKSGMTVKKKLEIFDKVNRGEVRVIMGSTFTLGTGVNIQERLHTLIHLDAPNRPMDYTQR 1972

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI           + V V     ++++D    QRL+TK  I D ++N 
Sbjct: 1973 NGRILRQGNIHKEMNKPVRVLRFGVEDSLDVTAYQRLKTKGAIADSIMNG 2022


>gi|258652903|ref|YP_003202059.1| helicase domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258556128|gb|ACV79070.1| helicase domain protein [Nakamurella multipartita DSM 44233]
          Length = 648

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 6/115 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             R            +      E+  G++PLL     + G G+ L  G         W  
Sbjct: 499 RPRQVGVITGATPGAERVRLCDEYQAGRLPLLVCSIPTVGVGVTLTRGC------DAWMA 552

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                         RQ + G  R V V   I   T+DE V   L  K+   D +L
Sbjct: 553 ETSWTPAEISQAEDRQWRRGQSRNVVVTTFIGLGTLDERVQDSLGRKADDLDQVL 607


>gi|75674449|ref|YP_316870.1| helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419319|gb|ABA03518.1| Superfamily II DNA/RNA helicase, SNF2 family [Nitrobacter
           winogradskyi Nb-255]
          Length = 541

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 90  QGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G +  ++  TI  +  N  +I        +   G+NLQ   N+L+ F L W+    +Q 
Sbjct: 347 NGSSGQRNQDTIARFRGNPPEIR-AIVSTEAGSEGVNLQ-IANVLINFDLPWNPMIVEQR 404

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           I R+           + V +Y ++   T +E ++ RL TK  +    +  ++
Sbjct: 405 IGRVQRL----GSQHKNVVIYNVMLAGTFEEYIVGRLMTKLQMATDAIGDIE 452


>gi|321156899|emb|CBW38888.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae]
          Length = 2081

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      + +K     ++ N G++ +L A     G GLN+Q     +    + W   
Sbjct: 1705 MEIAFVHDANSDEKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPS 1764

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + QQ   RI      Q    + V +Y+ I + + D  +      K      ++ +  KE 
Sbjct: 1765 DIQQRNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEP 1818

Query: 203  IH 204
            I 
Sbjct: 1819 IR 1820


>gi|189218338|ref|YP_001938980.1| Superfamily II DNA/RNA helicase, SNF2 family [Methylacidiphilum
           infernorum V4]
 gi|189185196|gb|ACD82381.1| Superfamily II DNA/RNA helicase, SNF2 family [Methylacidiphilum
           infernorum V4]
          Length = 940

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + Y F ++             +++       + +     +     + G GLNLQ+  +++
Sbjct: 501 MLYEFLTERGFKVVCLNGSMDMEERKRVQNAFAKDAR--ILISTDAGGEGLNLQF-CHVV 557

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + + + W+    +Q I R+      + G    V     + +++++  V + L  K  + 
Sbjct: 558 INYDIPWNPMRLEQRIGRVD-----RIGQTHTVHAINFVFEDSVEHRVREVLEEKLAVI 611


>gi|171679323|ref|XP_001904608.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939287|emb|CAP64515.1| unnamed protein product [Podospora anserina S mat+]
          Length = 997

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 18/151 (11%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQE 103
            K+ AL   I    +   I+   +   L                     +L +    +++
Sbjct: 825 SKLLALLKDISMHLSQKSIIFSSWKKTLNLISELLTSYRIPFYCIHGSLSLGERIRILKD 884

Query: 104 WNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +       +L     +   GLNL    + +      W+       +E   + R  + G  
Sbjct: 885 FRSSSGANVLLMTLGTGAVGLNL-AVASRIYLMEPQWNPS-----VELQAIGRALRLGQT 938

Query: 163 RAVFVYYLIAQNTIDE-LVLQRLRTKSTIQD 192
             V +   I ++TI++  VL R   K  +  
Sbjct: 939 EQVAIVRYIVKHTIEDSNVLSRQEAKLQLAS 969


>gi|226227641|ref|YP_002761747.1| hypothetical protein GAU_2235 [Gemmatimonas aurantiaca T-27]
 gi|226090832|dbj|BAH39277.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 588

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQG-RTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGL 123
                V   +   L   +     G  +  +    +  + +       +L     S     
Sbjct: 414 GWHHAVYGIWREALREYRPVMYTGAESPTQRDAALARFKDPSDEGSRVLIMSLRSGAGVD 473

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            LQ+    +VF  L W    H+Q   R+      +      V  YY+ A +  D ++++ 
Sbjct: 474 GLQHACRTVVFGELDWSPGVHEQCAGRV-----HRDAQGEPVTAYYMCADDGADPIMIEV 528

Query: 184 LRTKSTIQDLL 194
           L  K +  + +
Sbjct: 529 LGVKRSQLEPV 539


>gi|302422820|ref|XP_003009240.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
 gi|261352386|gb|EEY14814.1| transcription termination factor 2 [Verticillium albo-atrum
           VaMs.102]
          Length = 924

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 19/152 (12%)

Query: 50  EVHDEKIKALEVII---EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--PCTIQEW 104
           +    K +AL  I+    K   + +++   + S L  +Q    +              + 
Sbjct: 763 DFKSSKTEALLKIVQATCKDPQSKVVIFSQWTSFLNIIQTQIEEAGLKWTRIDGSMKPDK 822

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +  I  L                 + ++    WW        IE   V R  + G KR 
Sbjct: 823 RDAAIAALVGLNLVA---------ADTVILADSWWAPA-----IEDQAVDRVHRLGQKRP 868

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             V+ L+ +NTI+E VL+    K  +      
Sbjct: 869 TTVWRLVMENTIEEQVLEIQAAKRQLISKAFQ 900


>gi|325119483|emb|CBZ55036.1| hypothetical protein NCLIV_054610 [Neospora caninum Liverpool]
          Length = 1180

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G +  +        ++    +L       G GL L    N ++F  +  +     +  E 
Sbjct: 897  GHSKAELAKLRCFRHDPDARVLLCSLLRAGRGLTLTE-ANHVIFLEVPLN-----RAEEE 950

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR-------LRTKSTIQDLL 194
              V R  +   KR   V+  I +++++E ++Q        L  +      +
Sbjct: 951  QAVGRVYRMAQKRQTHVWRFIVKDSVEERIVQMRQNPRDSLSERLATAAAV 1001


>gi|197308128|gb|ACH60415.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308130|gb|ACH60416.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308132|gb|ACH60417.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308134|gb|ACH60418.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308136|gb|ACH60419.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308138|gb|ACH60420.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308140|gb|ACH60421.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308142|gb|ACH60422.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308144|gb|ACH60423.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308146|gb|ACH60424.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308148|gb|ACH60425.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308150|gb|ACH60426.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308152|gb|ACH60427.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308154|gb|ACH60428.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308156|gb|ACH60429.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
 gi|197308158|gb|ACH60430.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           menziesii]
          Length = 73

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+      +      + G G+NL    +  + +   W+ +     ++   + R  +
Sbjct: 1   IKDFNDPDSKFCIFLLSTRAGGLGINLTA-ADTCIIYDSDWNPQ-----MDMQAMDRCHR 54

Query: 159 AGFKRAVFVYYLIAQNTID 177
            G  + V VY LI  ++++
Sbjct: 55  IGQTKPVHVYRLITAHSVE 73


>gi|145348662|ref|XP_001418764.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578994|gb|ABO97057.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1156

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 67/228 (29%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHD-------EKIKALEVIIEKAN--AAPIIVAYHFNSD 80
           ++  +L N        +   +           K   L+ ++ K       +++       
Sbjct: 755 MELRKLCNHPSLSYPPEKGGDFRGPNLVRAGGKFWILDRLLVKLQRSGHRVLLFCTMTKL 814

Query: 81  LARLQKAFPQ-----------------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGH 121
           L  L+                        +L++    I ++N       +      + G 
Sbjct: 815 LDLLENYLQWRWTTPDGQDLKYCRIDGNTSLEQREIAINDFNAPHSDKFIFLLSIRAAGR 874

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ   + +V +    + +      E   + R  + G  R V V +  A   +D+ ++
Sbjct: 875 GLNLQT-ADTVVVYDPDPNPKN-----EEQAIARAHRIGQTREVRVIHFEA---VDDDIV 925

Query: 182 QR------------------------------LRTKSTIQDLLLNALK 199
           Q+                               + K  +   +++A +
Sbjct: 926 QKKKGSKKEEVGWGGPNRSYCESLESSVRNVIQKQKIEMAAEIVDAGR 973


>gi|260823378|ref|XP_002604160.1| hypothetical protein BRAFLDRAFT_119758 [Branchiostoma floridae]
 gi|229289485|gb|EEN60171.1| hypothetical protein BRAFLDRAFT_119758 [Branchiostoma floridae]
          Length = 761

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++F    ++ +      +     R  + G  R V +  LI ++T++E++L+R  
Sbjct: 299 LASADTVIFMDSDFNPQN-----DLQAAARAHRIGQTRPVKIIRLIGRSTVEEIILKRAE 353

Query: 186 TKSTIQDLLLNA 197
            K  + + ++  
Sbjct: 354 AKLKLTNSVIEG 365


>gi|242080501|ref|XP_002445019.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
 gi|241941369|gb|EES14514.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
          Length = 749

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCT-IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVF 134
                   +     G T  +D    +  +N      +LF    +CG G++L  G + +V 
Sbjct: 594 MKGWHVGKEIFMISGDTSQEDREVAVDHFNNSADAKVLFGSIKACGEGISL-VGASRVVI 652

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             +  +         R  + R  + G ++ VFVY L+A ++ +E V +    K  I
Sbjct: 653 LDVHLNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSDEEKVHETAFKKEVI 703


>gi|194396911|ref|YP_002037980.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
 gi|194356578|gb|ACF55026.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
          Length = 2074

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      + +K     ++ N G++ +L A     G GLN+Q     +    + W   
Sbjct: 1698 MEIAFVHDANSDEKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPS 1757

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + QQ   RI      Q    + V +Y+ I + + D  +      K      ++ +  KE 
Sbjct: 1758 DIQQRNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEP 1811

Query: 203  IH 204
            I 
Sbjct: 1812 IR 1813


>gi|302906263|ref|XP_003049441.1| hypothetical protein NECHADRAFT_106263 [Nectria haematococca mpVI
           77-13-4]
 gi|256730376|gb|EEU43728.1| hypothetical protein NECHADRAFT_106263 [Nectria haematococca mpVI
           77-13-4]
          Length = 750

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +L     +   GL L    N++      W+       IE   +TR  + G  R V V
Sbjct: 645 NIRVLLISINTGAVGLTLTK-ANVVHIVEPQWNPA-----IEEQAITRVVRMGQTRPVTV 698

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  I   ++++ V++  + K+ I  L +  
Sbjct: 699 FKYIMNESVEQGVVKLQQRKTRIVKLSMQD 728


>gi|254478047|ref|ZP_05091431.1| Type III restriction enzyme, res subunit family [Carboxydibrachium
           pacificum DSM 12653]
 gi|214036051|gb|EEB76741.1| Type III restriction enzyme, res subunit family [Carboxydibrachium
           pacificum DSM 12653]
          Length = 881

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 31/174 (17%)

Query: 50  EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLD 95
           +  D K+  L  ++ K     +    ++   F +    L++   +             + 
Sbjct: 447 QFFDVKLDTLFDLLFKVRLGESDVKFLIFTEFRATQDYLREMLQKRGYKVVVLNGSMDIG 506

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    ++E+ E     +     + G GLNLQ+  +I++ + + W+  + +Q I R+    
Sbjct: 507 ERKAALKEFEEAAD--IMVSTDAGGEGLNLQF-CHIVINYDMPWNPMKIEQRIGRVD--- 560

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI---------QDLLLNALKK 200
             + G  + VFV+  I + TI+  V + L  K  +            +L++ + 
Sbjct: 561 --RIGQTKDVFVFNFILEETIENRVRKVLEEKLEVIFRELGIDKMSDVLDSFEA 612


>gi|74217234|dbj|BAC32913.2| unnamed protein product [Mus musculus]
          Length = 1323

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
           +  QL         E    +    K++AL ++++K  +    +++       L  L+   
Sbjct: 755 QLQQLTALRSLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDILEMFL 814

Query: 89  PQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                            +    ++ +N + +I        S   G+NL    + +VF+  
Sbjct: 815 NFHYLTYVRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRATGINL-VEADTVVFYDN 873

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 874 DLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 913


>gi|258652709|ref|YP_003201865.1| helicase domain-containing protein [Nakamurella multipartita DSM
           44233]
 gi|258555934|gb|ACV78876.1| helicase domain protein [Nakamurella multipartita DSM 44233]
          Length = 217

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                      +  G++ LL     + G G+ L  G         W              
Sbjct: 80  PGADRTRLCDAYQAGRLSLLVCSIPTIGVGVTLTRGC------DAWMAETSWTPSEISQA 133

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             RQ + G  R V V   I   T+DE V   L  K+   D +L
Sbjct: 134 EDRQWRRGQSRDVVVTTFIGVGTLDERVQDSLARKADDLDQVL 176


>gi|45659042|ref|YP_003128.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602288|gb|AAS71765.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 948

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK 96
           K  ++    K+K   + ++K   +  I+   F +            ++           K
Sbjct: 458 KIKEDKKSIKLKETILKLQKEGHSKFIIFTQFRTTQDFLASVLSDFQVTLFHGSLSADAK 517

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +   ++   + +I        + G G NLQ+  N+L  + L W   + +Q I RI     
Sbjct: 518 EKAIVEFKTKTEI---LICTEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI----- 568

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  VF++   +++T+ E +L+ L  K  + +  + +
Sbjct: 569 HRFGQKDNVFIFNFASKDTVAERILEVLTNKIRLFEESIGS 609


>gi|323136172|ref|ZP_08071254.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
 gi|322398246|gb|EFY00766.1| SNF2-related protein [Methylocystis sp. ATCC 49242]
          Length = 1027

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 61/213 (28%), Gaps = 34/213 (15%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEKA- 66
            +    L    + A  +         ++       +      +    ++ A   I+ +  
Sbjct: 767 DDARLKLARGGLGA--ALKTLHHIRSVSVHPSLDAKACDADYIGASARLSATFEILRRIA 824

Query: 67  -NAAPIIVAYHFNSDLARLQ------------KAFPQGRTLDKDPCTIQEWN-----EGK 108
                 +V         R                      + K    +  +      +  
Sbjct: 825 AKGERALVFIEHRQMQHRFIELARAEFGLSRIDLINGDTPIPKRQAIVNRFQQHLEEDRG 884

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L   P + G GL L      ++  S WW+    +Q  +R+      + G  R V ++
Sbjct: 885 FDILVLGPKAAGVGLTLTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRLGQTRPVSIH 938

Query: 169 YLIA------QNTIDELVLQRLRTKSTIQDLLL 195
             +A      +N+ D L+   ++ K  +    L
Sbjct: 939 LPMAIHPGYRENSFDCLLQSLMQRKRKLASSAL 971


>gi|149634328|ref|XP_001510861.1| PREDICTED: similar to E1A binding protein p400 [Ornithorhynchus
            anatinus]
          Length = 3116

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 62/167 (37%), Gaps = 19/167 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
              +  Q+    +    +    +    K++AL V+++K  +    +++       L  L+ 
Sbjct: 1838 LQQLRQITALRLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMMLMLDILEM 1897

Query: 87   AFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                               +    ++ +N + +I        S   G+NL    + +VF+
Sbjct: 1898 FLNFHYLTYIRVDENANSEQRLELMKSFNRDKRIFCAIISTHSRSTGVNL-VEADTVVFY 1956

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 1957 DNDLNP-----VMDAKAQEWCERIGRCKDIHIYRLVSGNSIEEKLLK 1998


>gi|24216735|ref|NP_714216.1| ATP-dependent RNA helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|24198088|gb|AAN51234.1|AE011558_10 ATP-dependent RNA helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 948

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK 96
           K  ++    K+K   + ++K   +  I+   F +            ++           K
Sbjct: 458 KIKEDKKSIKLKETILKLQKEGHSKFIIFTQFRTTQDFLASVLSDFQVTLFHGSLSADAK 517

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +   ++   + +I        + G G NLQ+  N+L  + L W   + +Q I RI     
Sbjct: 518 EKAIVEFKTKTEI---LICTEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI----- 568

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  VF++   +++T+ E +L+ L  K  + +  + +
Sbjct: 569 HRFGQKDNVFIFNFASKDTVAERILEVLTNKIRLFEESIGS 609


>gi|68011272|ref|XP_671073.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486917|emb|CAI01503.1| hypothetical protein PB300236.00.0 [Plasmodium berghei]
          Length = 220

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                +L     + G GLNL    + +    LWW+       IE     R  + G  + V
Sbjct: 106 NESGKVLLCSLKAGGVGLNLT-VSSKVYLMDLWWNPA-----IEDQAFERIHRIGQLKDV 159

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y  + + T++E +LQ  ++K    +  L
Sbjct: 160 NIYKFVLEKTVEERILQIHQSKQYTANQCL 189


>gi|71659675|ref|XP_821558.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
 gi|70886941|gb|EAN99707.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 983

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQ 102
            +     E I+       II+   F   L  +Q    +               +    +Q
Sbjct: 815 SKLDAIAEYILSVPKDEKIIIFSQFGDMLELIQIWLQRASVKAVKLTGSLMLSQRQAVLQ 874

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + ++  +  +     + G GLNLQ   N ++    WW+              R  + G 
Sbjct: 875 AFLHDPGVRAILISLKAGGEGLNLQ-VANHVILVDPWWNPAVEM-----QAAQRAHRIGQ 928

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + V V   + + +++E ++     K  + +  ++ 
Sbjct: 929 TKPVRVVRFVVERSVEERMMDLQDKKMLVIEGTIDG 964


>gi|325120317|emb|CBZ55871.1| putative helicase conserved C-terminal domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2877

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---PCTIQEWNEGKIPLLF 113
            +  ++I+  +    + +   F  +  R++      +  DK            + +  +L 
Sbjct: 2549 RCPKIIVASSLWENLFLLGCF-LEKHRVKCCHFYEKMQDKRNRVDALKSFQQDTETMVLL 2607

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                   HGL+L    + ++      D    QQ+I R       + G  R V V   I +
Sbjct: 2608 LSTQLGAHGLDL-SCASHVLLPDPPTDPNVEQQVISR-----AHRMGALRDVHVEIFILK 2661

Query: 174  NTIDELVLQR 183
            +T++E +LQ 
Sbjct: 2662 DTVEETILQL 2671


>gi|160944382|ref|ZP_02091610.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444164|gb|EDP21168.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2409

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +  +      T +K      +   G++ +L    A  G G N+Q     +    + W   
Sbjct: 2018 QEIEFIHNADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPS 2077

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q   RI      Q    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 2078 DMTQRNGRIIR----QGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 2128


>gi|12859719|dbj|BAB31751.1| unnamed protein product [Mus musculus]
          Length = 350

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1   MDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|7023894|dbj|BAA92122.1| unnamed protein product [Homo sapiens]
          Length = 350

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1   MDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|295697398|ref|YP_003590636.1| helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295413000|gb|ADG07492.1| helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 1314

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 8/172 (4%)

Query: 27  SKTVKCLQLANGAV-YYDEEKHWKEVHDEKIKALEVII-EKANAAPIIVAYHFNSDLARL 84
           SK  + L + NG             +       L  I+     AAP +    ++   A  
Sbjct: 772 SKMKRLLGILNGRKDPVSGRFRQTVIFTRFYDTLRDILSHLRQAAPRMRIGTYSGKGAEW 831

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                 GR         + + +G+I +L     +   GLNLQ   ++L+ F L W+  + 
Sbjct: 832 FAPDAGGRGEADREEIKERFLQGEIDILLCT-DAAAEGLNLQT-ADMLINFDLGWNPMKI 889

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +Q I RI    QR       +FV  L    + +E+V  RL  +    +L++ 
Sbjct: 890 EQRIGRIDRIGQRHP----EIFVVNLCYAGSEEEVVYGRLLQRLEQANLVVG 937


>gi|121707834|ref|XP_001271954.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119400102|gb|EAW10528.1| SNF2 family helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 1190

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            ++II   +    +        L    + +    T  +       +    +I +       
Sbjct: 903  KIIIFYDSTNSAVWIAEGLDLLGIEYRMYTSTLTPQQRSSYFNLFRYNEEIRVFLMDLNQ 962

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + + F +        Q  IE   + R  + G  R V+V  L+ ++T+++
Sbjct: 963  ASHGLHI-ANASRVFFVNP-----VWQPNIESQAIKRAHRIGQTRPVYVETLVLKDTLED 1016

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  + D  +   +K+ + 
Sbjct: 1017 RMLKR---RKAMSDQEMQEAEKDPLD 1039


>gi|55376574|ref|YP_134426.1| putative DEAD/H helicase [Haloarcula marismortui ATCC 43049]
 gi|55229299|gb|AAV44720.1| putative DEAD/H helicase [Haloarcula marismortui ATCC 43049]
          Length = 1212

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 8/145 (5%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                  I +           ++                       +++ +G   +L   
Sbjct: 800 YHDTLEHIRETLTDTHPNVGTYSGGGGMQYDETTGEWVNVGKEAIKRDFTDGDTNILICT 859

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQN 174
             S   GLNLQ   + L+ F L W+    +Q I RI      + G K  V  +     ++
Sbjct: 860 -DSASEGLNLQT-ADALINFDLPWNPMRVEQRIGRID-----RIGQKNEVVKIINYAYKD 912

Query: 175 TIDELVLQRLRTKSTIQDLLLNALK 199
           +ID  + + L  +  + + ++  ++
Sbjct: 913 SIDGDIYEELEGRLQLFENVVGPMR 937


>gi|320588854|gb|EFX01322.1| DNA repair and recombination protein rad5c [Grosmannia clavigera
           kw1407]
          Length = 852

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           ++A H      R  +         +     +   +  + +L     + G GLNL    N 
Sbjct: 726 LLASHLKDAGIRYLRVDGSLTNRVRQDSLREFAQDADVRVLIMTTGTGGIGLNLT-CANR 784

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +      W+       +E   + R  + G +  V V   + ++T +E +L +   K  + 
Sbjct: 785 IFLVEPQWNPG-----VESQAIARAIRLGQESEVLVTRYLVEDTEEEAILAQQIGKKRLA 839

Query: 192 DL 193
            +
Sbjct: 840 AM 841


>gi|327474192|gb|EGF19600.1| SNF2 family protein [Streptococcus sanguinis SK408]
          Length = 2077

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                      + +K     ++ N G++ +L A     G GLN+Q     +    + W   
Sbjct: 1701 MEIAFVHDANSDEKKNSLSRKVNAGEVRVLLASTEKGGTGLNVQSKMKAVHHLDVPWRPS 1760

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            + QQ   RI      Q    + V +Y+ I + + D  +      K      ++ +  KE 
Sbjct: 1761 DIQQRNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEP 1814

Query: 203  IH 204
            I 
Sbjct: 1815 IR 1816


>gi|156741590|ref|YP_001431719.1| helicase domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232918|gb|ABU57701.1| helicase domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 1129

 Score = 62.5 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             D          G  LD      + +   +  ++ A  A+   G+NLQ+  ++++ + +
Sbjct: 512 MRDWGYRVCTIHGGMPLDARIEAEKTFKN-EAQVMVATEAAG-EGINLQF-CHLMINYDI 568

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+    +Q + RI      + G  R V ++ L+A +T +  VL RL  K       L +
Sbjct: 569 PWNPNRLEQRMGRI-----HRYGQTREVTIFNLVAADTREGRVLHRLFEKLDEIRSALGS 623

Query: 198 LK 199
            +
Sbjct: 624 DR 625


>gi|291391484|ref|XP_002712469.1| PREDICTED: zinc finger, RAN-binding domain containing 3
           [Oryctolagus cuniculus]
          Length = 1062

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCT 100
            K  A++  I+       +    F   L+                          +    
Sbjct: 287 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIRL 346

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 347 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 400

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K+  
Sbjct: 401 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKERL 443


>gi|294676841|ref|YP_003577456.1| SNF2 family helicase [Rhodobacter capsulatus SB 1003]
 gi|294475661|gb|ADE85049.1| helicase, SNF2 family [Rhodobacter capsulatus SB 1003]
          Length = 1030

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 38/220 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALE 60
           + Y          L      A  +         ++            + +    ++ A  
Sbjct: 766 QVYDA----ARLQLASGTPGA--ALKLLHHIRTVSVHPALGSYGADAEFIAASARLSATF 819

Query: 61  VIIEKAN--AAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNE 106
            I+ +        +V         R  +                   + +    +  +  
Sbjct: 820 DILRQIRARGERALVFIENRQMQYRFIEIARAEFGLARIDLINGDTPIAQRQQIVNRFQA 879

Query: 107 -----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                G   LL   P + G GL L      ++  S WW+    +Q  +R+      + G 
Sbjct: 880 HLEDGGGFDLLVLGPKAAGTGLTLTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRLGQ 933

Query: 162 KRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
            R V ++  +A       ++ D L+   ++ K  +    L
Sbjct: 934 TRPVQIHVPMAIHPGYRAHSFDCLLHTLMQRKRRMASAAL 973


>gi|225419973|ref|ZP_03762276.1| hypothetical protein CLOSTASPAR_06314 [Clostridium asparagiforme
           DSM 15981]
 gi|225041395|gb|EEG51641.1| hypothetical protein CLOSTASPAR_06314 [Clostridium asparagiforme
           DSM 15981]
          Length = 421

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y KF R+    + G         SK +    + +             ++  ++ A + 
Sbjct: 234 KEYRKFMRDAIITIDGREYIGDTILSKRIYARMMCS------------YLNKGRVAAFKD 281

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +++      +IV Y+FN +L  +Q+A          ++     +  + E    + F    
Sbjct: 282 LVQSTE-ERLIVFYNFNEELNTMQEAIAELERPISIVNGSFKDLTAYEEASDSITFVQYQ 340

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ   N +++FS+    E  +Q  +RI      + G K+  F Y +I   T++
Sbjct: 341 AGAMGLNLQK-ANRIIYFSMTDRSELFEQSKKRI-----HRIGQKKPCFYYQMICPGTVE 394

Query: 178 ELVLQRLRTKSTIQDLLL 195
           E +L  L  +    D L 
Sbjct: 395 EDILHTLELRKDYTDELF 412


>gi|302839751|ref|XP_002951432.1| hypothetical protein VOLCADRAFT_91908 [Volvox carteri f. nagariensis]
 gi|300263407|gb|EFJ47608.1| hypothetical protein VOLCADRAFT_91908 [Volvox carteri f. nagariensis]
          Length = 1592

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 51/167 (30%), Gaps = 32/167 (19%)

Query: 30   VKCLQLANGAVYYDEE------KHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
             +  ++ N  +                    K+  L+ ++ K   +   +++       L
Sbjct: 987  TELRKVCNHPLISYRMDEAWGGGPEVLTQCGKMMVLDRLLVKFFYSGHRVLLFSTMTKFL 1046

Query: 82   ARLQKAFPQGRTLDKD----------------PCTIQEWN--EGKIPLLFAHPASCGHGL 123
              ++      +  +                     I+++N  +  I +      + G GL
Sbjct: 1047 DLMEVYLMWRQLPNGRRMLFRRIDGSTPLEIREDAIRDFNRPDSDIFIFLLSIRAAGRGL 1106

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            NLQ   + ++ +    + +      E   + R  + G  + V V + 
Sbjct: 1107 NLQT-SDTVIIYDPDPNPKN-----EEQAIARSHRIGQTKEVRVVHF 1147


>gi|221127791|ref|XP_002156270.1| PREDICTED: similar to Zinc finger, RAN-binding domain containing 3
           [Hydra magnipapillata]
          Length = 576

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 8/166 (4%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR- 92
           QL             K + D         +       ++ A        +++     G  
Sbjct: 314 QLFCDTALAKAGAVQKYICDLIDGMPNKFLVFCFHMTMVQAIQETLVQKKVKYICITGSV 373

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    ++ +    +  +      +   GL L    + +VF  L              
Sbjct: 374 PPVQRGHLVETFQSNKEYRVAILSIQAASTGLTLTA-ADHVVFAELHHTPGVLL-----Q 427

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R  + G K AV ++YL+AQ TID+++   L+ K  +    LN 
Sbjct: 428 AEDRCHRIGQKNAVQIHYLLAQGTIDDILWTMLQRKVMVTTAALNG 473


>gi|188536006|ref|NP_001120938.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Danio rerio]
 gi|221222756|sp|B2ZFP3|SMAL1_DANRE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|187373311|gb|ACD03327.1| Smarcal1 [Danio rerio]
          Length = 807

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 35/219 (15%)

Query: 5   HKFQRELYCDLQGEN----------IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-- 52
            + + E+   L  +           I +   A+      +LA G     +EK    V   
Sbjct: 548 RRLKSEVLSQLPAKQRKVVTVTTDGINSRTKAALNAAARELAKGYHNKSQEKEALLVFFN 607

Query: 53  ---DEKIKALEVIIE---KANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
              + KI+A+   I    +      +V  H    L                        +
Sbjct: 608 HTAEAKIRAIMEYISDMLECGREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAE 667

Query: 97  DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                + +   +   +      +   GL L     ++VF  L+W+              R
Sbjct: 668 RQLLCERFQASQQSCVAVLSITAANMGLTLHSAA-LVVFAELFWNPGVLI-----QAEDR 721

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G    V ++YL+A+ T D+ +   ++ K  + + +
Sbjct: 722 VHRIGQTSNVDIHYLVAKGTADDYLWPMIQAKMNVLEQV 760


>gi|297159169|gb|ADI08881.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 605

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 43/240 (17%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVY-YDEEKHWKEVH------ 52
           + Y   +       ++   N EA   A+   + L  A             + +H      
Sbjct: 341 EIYDALKGRFSPRAEVDKTNFEALGKAAL--RLLMAATSPALLVAGSTRHEPLHFRVPPL 398

Query: 53  --------------------DEKIKALEVIIEKAN--AAPIIVAYHFNS-------DLAR 83
                                 K +    I+          +V   F          LA 
Sbjct: 399 EIPEGHPLSALLRQLPDYELSPKYQEALSIVSANAARGRKTLVWTSFVRSITSLQALLAP 458

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            Q A   G T D+     +  ++    +L ++PA+ G G++L    +  V+    +    
Sbjct: 459 FQPAAVHGGTPDRAAELHRFRDDRDCAVLISNPATLGEGISLHQVCHDAVYVDRDFQAGR 518

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           + Q ++RI               +  L AQ ++D++V  RL  K      +L+  + + +
Sbjct: 519 YLQSLDRIHRLG---LAPDTKTRITVLAAQGSVDDIVAMRLAKKLDFMGRILDDPEVQQL 575


>gi|15228256|ref|NP_188282.1| SNF2 domain-containing protein / helicase domain-containing protein
           / RING finger domain-containing protein [Arabidopsis
           thaliana]
          Length = 638

 Score = 62.5 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 12/164 (7%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
             +    +    +      I   +           +VA      +               
Sbjct: 435 CHSQLKHDVVFTESAVRSCINDYDD----PEDKNALVASRRVYFIENPSCDRDSSVACRA 490

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNL---QYGGNILVFFSLWWDLEEHQQMIERIGV 153
                    +  I  L           NL       + ++   LWW+        E   +
Sbjct: 491 RQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTT-----EDQAI 545

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  RAV V  +  +NT++E +L     K  I    L  
Sbjct: 546 DRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGE 589


>gi|294083751|ref|YP_003550508.1| hypothetical protein SAR116_0181 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663323|gb|ADE38424.1| hypothetical protein SAR116_0181 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1130

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVIIEKANAAP-----I 71
             IEA ++         +    V +++    + +    ++     I+E+ +         
Sbjct: 784 SMIEALHAFKSIS-LHPI--SPVQFEQFSIDEYIKASARLSKTFEILERIHKQNEKVLIF 840

Query: 72  IVAYHFN---SDLARLQKAFPQGR-------TLDKDPCTIQEWNEGKI--PLLFAHPASC 119
           + +  F    + L R +              + +     +  +    I   ++   P + 
Sbjct: 841 LESRKFQVVLASLVREKFKMDHSPLIINGLISGEARQERVNTFQSNPIGFDVMIISPKAG 900

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN----- 174
           G GL L    N ++    WW+     Q  +R       + G  + V VY  IA+N     
Sbjct: 901 GVGLTLTA-ANNVIHLERWWNPAVEDQCTDR-----AYRIGQTKTVNVYTPIAKNGSFGE 954

Query: 175 -TIDELVLQRLRTKSTIQDLLL 195
            + D ++ + L  K +I   L 
Sbjct: 955 KSFDCILDRLLNEKRSIAKGLF 976


>gi|257438349|ref|ZP_05614104.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199180|gb|EEU97464.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2422

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +  +      T +K      +   G++ +L    A  G G N+Q     +    + W   
Sbjct: 2025 QEIEFIHNADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPS 2084

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q   RI      Q    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 2085 DMTQRNGRIIR----QGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 2135


>gi|146087881|ref|XP_001465933.1| helicase  [Leishmania infantum JPCM5]
 gi|134070034|emb|CAM68366.1| putative helicase-like protein [Leishmania infantum JPCM5]
          Length = 1273

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                       +  +    +++++    P L      + G G+ +      ++     +
Sbjct: 858 RRIRYCRLDGSHSAAQRAAMLEDFDRPDGPELFLLSTKAGGVGITVTA-ATRVILVDTSF 916

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLN-- 196
           +  + Q       + R  + G  R V+VY L    T++  +  Q+L  K  +   ++   
Sbjct: 917 NPADDQ-----QAIGRAYRYGQTRPVYVYRLTCYPTLEYSIFVQKLA-KEWLFKTVIEES 970

Query: 197 ALKKETI 203
           ++K++ +
Sbjct: 971 SVKRDGL 977


>gi|146281859|ref|YP_001172012.1| helicase, putative [Pseudomonas stutzeri A1501]
 gi|145570064|gb|ABP79170.1| helicase, putative [Pseudomonas stutzeri A1501]
 gi|327480090|gb|AEA83400.1| helicase, putative [Pseudomonas stutzeri DSM 4166]
          Length = 1012

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 43/241 (17%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--------- 51
            ++ Y              +    ++ +   +   ++      DE   +            
Sbjct: 774  LQVYDDVLDGYRARRASADDMRGSALAALTQLRSVSLHPRLDDEPSLYSRDGHHARQLMS 833

Query: 52   HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------------- 92
               K+  +  ++++       +I+          L+    Q                   
Sbjct: 834  ESGKLAVMLKLLDEIRDKGEKVILFMMTKRLQRVLKLWLDQIYGLDIAVINGDTKAVATK 893

Query: 93   -TLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     I  +       +L   P + G GL    G N +V     W+  +     E 
Sbjct: 894  AEEMTRKKLISAFEAKSGFNVLVMSPVAAGVGLT-VVGANHVVHLERHWNPAK-----EA 947

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQ----NTIDELVLQRLRTKSTIQDLLL--NAL-KKETI 203
                R  + G ++ VF++         ++ D  + + LR K  ++D ++   A+ + E I
Sbjct: 948  QASDRVYRIGQQKEVFIHLPAVTHPQFDSFDVHLDRLLRGKLMLKDAVVTPEAVSESEMI 1007

Query: 204  H 204
            H
Sbjct: 1008 H 1008


>gi|11994614|dbj|BAB02751.1| unnamed protein product [Arabidopsis thaliana]
          Length = 653

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           N+ +   +     +   GLN+    + ++   LWW+        E   + R  + G  RA
Sbjct: 518 NDYETGAMLMSLKAGNLGLNMVA-ASHVILLDLWWNPTT-----EDQAIDRAHRIGQTRA 571

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           V V  +  +NT++E +L     K  I    L  
Sbjct: 572 VTVTRIAIKNTVEERILTLHERKRNIVASALGE 604


>gi|221057618|ref|XP_002261317.1| DNA helicase [Plasmodium knowlesi strain H]
 gi|194247322|emb|CAQ40722.1| DNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 875

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCG 120
           ++   +   +     F ++   +         +DK    I+   N+ KI +      +CG
Sbjct: 634 LLFCHHKLVMDEIDKFLTEKKCMFIRIDGLTPIDKRELYIKSFQNDDKIKIALLSLTACG 693

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF-VYYLIAQNTIDEL 179
            GLNL    N +VF  L+W   +           R  + G    V  ++YLIAQ TIDE 
Sbjct: 694 LGLNLTA-ANTVVFGELYWVPGQII-----QAEDRAHRIGTTHEVINIHYLIAQKTIDET 747

Query: 180 VLQRLRTKSTIQDLLLNALKKETIHV 205
           V + +  K       LN ++ ++++V
Sbjct: 748 VWRIINRKWNTLTTALNGME-DSLNV 772


>gi|168046653|ref|XP_001775787.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162672794|gb|EDQ59326.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 657

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 55  KIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQ 102
           K+ A++  +          +V  H  S L  +++   +          G         + 
Sbjct: 498 KLPAVQEYLTTMIDAECKFLVFAHHQSMLDGIEQLLMKKKVGLIRIDGGTPQSARQALVT 557

Query: 103 EWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            +     I        + G GL L    + ++F  + W   +           R  + G 
Sbjct: 558 RFQENDNIIAAVLGIRAAGVGLTLTA-ASTVIFAEMSWTPGDLV-----QAEDRAHRIGQ 611

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +V VYYL A +TID+++   ++ K      +L+ 
Sbjct: 612 ASSVNVYYLHAHDTIDDIIWDTVQNKLENLSQVLDG 647


>gi|219848036|ref|YP_002462469.1| helicase domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219542295|gb|ACL24033.1| helicase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 966

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           + Y F +              +         +       +     + G GLNLQ+  +++
Sbjct: 516 MLYEFLTQRGFTVVCLNGAMDMAARKQVQDAFANNAR--ILISTDAGGEGLNLQF-CHVV 572

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + + + W+    +Q I R+      + G    V     + Q++++  + + L  K  + 
Sbjct: 573 INYDIPWNPMRLEQRIGRVD-----RIGQTHTVRAVNFVFQDSVEHRIREVLEQKLAVI 626


>gi|85859510|ref|YP_461712.1| snf2-related protein with C-terminal helicase [Syntrophus
           aciditrophicus SB]
 gi|85722601|gb|ABC77544.1| snf2-related protein with C-terminal Helicase [Syntrophus
           aciditrophicus SB]
          Length = 1178

 Score = 62.1 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 68/207 (32%), Gaps = 23/207 (11%)

Query: 5   HKFQRELYCDLQ----GENIEAFNSAS-KTVKCLQLANG---AVYYDEEKHWKEVHDEKI 56
            +   E    L+       I A      +  +  + AN    A         + +   K 
Sbjct: 457 DQLADEYTAALELEQLRAEISALRELVEQARRVREDANDSKLAALKKCLGEAQFLE-LKD 515

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
              +++I   +   +                   G    +     + +  G   +  A  
Sbjct: 516 GRGKLLIFTEHRDTLGYVRDHLERWGFSTCEIHGGMNPHERKRAQEVFRTGA-QVCIATE 574

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT- 175
           A+   G+NLQ+  ++++ + + W+    +Q + RI      + G  R V+ +  +A ++ 
Sbjct: 575 AAG-EGINLQF-CHLMINYDMPWNPTRLEQRLGRI-----HRIGQDRDVYAFNFVATDSE 627

Query: 176 -----IDELVLQRLRTKSTIQDLLLNA 197
                ++  +L RL  K    +  L  
Sbjct: 628 DGQPIVEGRILHRLLEKLDQMNEALEG 654


>gi|304314696|ref|YP_003849843.1| helicase domain related protein [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588155|gb|ADL58530.1| helicase domain related protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 774

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 18/155 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRTLDKDPCTIQEW 104
           K+  L+ I+E+     I++                           G ++D+      ++
Sbjct: 164 KLMELQKILEEIGHEKILIFSESKDTVDYLLEKIESWGYSVCTIHGGMSMDERIAAEDDF 223

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
              K  ++ A  A+   G+NLQ+  +I+V + + W+    +Q + RI      +   +R 
Sbjct: 224 RRNK-QVMVATEAAG-EGINLQF-CHIMVNYDIPWNPNRLEQRMGRI-----HRYKQRRD 275

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           V +Y L+A NT + LV++RL  K       + + K
Sbjct: 276 VHIYNLVAGNTREGLVMRRLLEKLDSIRQDIGSDK 310


>gi|297624923|ref|YP_003706357.1| helicase domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297166103|gb|ADI15814.1| helicase domain protein [Truepera radiovictrix DSM 17093]
          Length = 1091

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 53  DEKIKALEVIIEK-ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTI 101
           D K+  L+ I++   N   +++       L               +      L++     
Sbjct: 467 DRKLTELQKILQSLPNGEKLLIFTEHKDTLTFIMRVLGKRGYTATSIDGSMRLEERIAAE 526

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + + +    ++ A  A+   G+NLQ+  +++V + + W+    +Q + R+      + G 
Sbjct: 527 RAFRDS-CRVMVATEAAG-EGINLQF-CSVMVNYDIPWNPTRLEQRMGRV-----HRYGQ 578

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +  V +Y L+AQ T +  VL RL TK       L + +
Sbjct: 579 RYDVRIYNLVAQGTREGDVLGRLLTKLEAMREQLGSDR 616


>gi|154274738|ref|XP_001538220.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414660|gb|EDN10022.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 996

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 21/56 (37%)

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +E   + R  +      V +Y L  +NT++E ++     K  + +  +  
Sbjct: 854 SHIGYFVEEQAIDRVHRLNQTVDVKIYKLTIKNTVEERIVGLQERKRELANATIEG 909



 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 4   YHKFQ----RELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           Y + +    + L   +  +NI   ++    ++  Q  N     
Sbjct: 549 YKRLEQRTDKTLERMIGDDNINYASALVLLLRLRQACNHPDLV 591


>gi|25011394|ref|NP_735789.1| hypothetical protein gbs1352 [Streptococcus agalactiae NEM316]
 gi|24412932|emb|CAD47011.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 2066

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1693 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQARMKAVHHLDVPWRPSDIQQ 1752

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  +      K      ++ +
Sbjct: 1753 RNGRLIR----QGNQHQNVEIYHYITKGSFDNYLWATQENKLRYIKQIMTS 1799


>gi|323455831|gb|EGB11699.1| hypothetical protein AURANDRAFT_1193 [Aureococcus anophagefferens]
          Length = 453

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++        N+ K+        + G GL L    + ++F  L W            
Sbjct: 348 PPAERQRLVESFQNDPKVRCALLSVTAAGVGLTLTA-ASAVLFAELHWTPGVLV-----Q 401

Query: 152 GVTRQRQAGFKRAVFVYYLIA---QNTIDELVLQRLRTKSTIQDLLLNALKK 200
              R  + G + +V V+YL+    ++++D  + + +  K ++    L+  KK
Sbjct: 402 AEDRAHRIGQRSSVNVHYLVLKDEKDSVDMALWRSIARKVSVVGAALDGAKK 453


>gi|332019805|gb|EGI60266.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Acromyrmex
           echinatior]
          Length = 693

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +   ++  +     ++  +    +Q  + + +   +     V +      + I+   + 
Sbjct: 439 DKQMREMSQQLQTNISALERHNALIQYYSQSSHARVKAVRNYVTNLFKNKKKCILYGHHQ 498

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQY 127
             +         +  +        + ++    I ++ E  +         +   G+ L  
Sbjct: 499 IILDAICEAAESVDIVYIRIDGKTSSEQRQLLIDKFQECDECLAAVLSITAVNTGVTLTA 558

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             N++VF  L+W+              R  + G    V + YLIAQNT D+ +   L  K
Sbjct: 559 -ANLVVFTELFWNPGILS-----QAEDRVHRIGQNNIVTIQYLIAQNTADDYIWPLLNKK 612

Query: 188 STIQDLLLNALKKE 201
             I + +   LK++
Sbjct: 613 KDILNAV--GLKQD 624


>gi|307110121|gb|EFN58358.1| hypothetical protein CHLNCDRAFT_142431 [Chlorella variabilis]
          Length = 713

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +      +   GL L    + +       +    Q       V R  + G +R V
Sbjct: 596 DDEVRVFLLSHKAGAQGLTL-VRASHVFLLEPALEPAIEQ-----QAVARVHRIGQQRPV 649

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQD 192
            V  L+ + +I+  VL     K  +  
Sbjct: 650 VVTRLLVKESIEHRVLAVQEAKHALFA 676


>gi|307127309|ref|YP_003879340.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
 gi|306484371|gb|ADM91240.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
          Length = 2074

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1702 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1761

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1762 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1813


>gi|227543556|ref|ZP_03973605.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227186396|gb|EEI66467.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L  L+ K   Q
Sbjct: 2   LIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILAALKRKDKTQ 56

Query: 192 DLLLNALKK 200
             L+NA+K 
Sbjct: 57  LALINAVKA 65


>gi|218531254|ref|YP_002422070.1| non-specific serine/threonine protein kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523557|gb|ACK84142.1| Non-specific serine/threonine protein kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1033

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 32/200 (16%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALEVII--EKANAAPIIVAYHFN 78
           A  +         ++        E     +    ++ A+  I+          +V     
Sbjct: 784 AGAAFKMLHHIRTVSVHPNLDGAETDSAFLEASARLSAVFEILGVIAERRERALVFVEHR 843

Query: 79  SDLAR------------LQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGH 121
               R                      + +    +  +      E    +L   P + G 
Sbjct: 844 RMQHRLVELARARFNLPRVDLINGDTPISRRQAIVNRFQRHLEGEPAFDVLVLGPKAAGT 903

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QNT 175
           GL L      ++  S WW+    +Q  +R+      + G  R V ++  +A      + +
Sbjct: 904 GLTLTA-ATHVIHLSRWWNPAVEEQCNDRV-----HRLGQTRPVTIHVPMAIHAGYREGS 957

Query: 176 IDELVLQRLRTKSTIQDLLL 195
            D L+   +  K  +    L
Sbjct: 958 FDCLLHGLMHRKRRLAASAL 977


>gi|30044094|ref|NP_835691.1| similar to DNA helicase [Rhodothermus phage RM378]
          Length = 670

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 23/200 (11%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAV-------YYDEEKHWKEVHDEKIKALEVI 62
           E   +   +    F   ++  +   +               EE+    V       +  I
Sbjct: 380 EAMAEFDEKMKVMFERVAEMRRFYAIHKAPFAADYIVSLVKEEEVDGLVVFAHHHDVFEI 439

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I+K   A  I       +             + +    ++++  GK+ ++     + G G
Sbjct: 440 IQKVLEAKGITYARITGE-----------ENVVQRQKAVEDFQSGKVDVVLCSILAAGVG 488

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           + L       VF  L W      Q  +R+    Q        V ++Y++A++T+DE    
Sbjct: 489 ITLTR-AKTAVFVELDWVPGNILQAEDRLHRIGQ----EAECVDIHYIVARHTLDENFAD 543

Query: 183 RLRTKSTIQDLLLNALKKET 202
            L  K  I +  LN  + +T
Sbjct: 544 YLTRKIEIIEKALNHERMKT 563


>gi|323454846|gb|EGB10715.1| hypothetical protein AURANDRAFT_62160 [Aureococcus anophagefferens]
          Length = 734

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQ-YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           N+    +     A    G+ L   G + L+ F   W+  +     +     R  + G  R
Sbjct: 568 NDPDGGVFLLLLALKAGGVGLTLTGASRLILFEPSWNPAD-----DDQAAARVWRDGQTR 622

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             F+Y L   ++++E VL+R   K  +   + +A ++
Sbjct: 623 PTFIYTLATAHSLEEHVLKRQAAKRNLAGRVRHAQRE 659


>gi|238482351|ref|XP_002372414.1| helicase, putative [Aspergillus flavus NRRL3357]
 gi|220700464|gb|EED56802.1| helicase, putative [Aspergillus flavus NRRL3357]
          Length = 941

 Score = 62.1 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQEWN-EGKIPLLFAHPAS 118
             I+   +   L  + K     R   +              +  ++    +P+L     +
Sbjct: 789 KSIIFSCWTRTLDLIAKHLKASRIEFERIDGKTSTSQRQKILDRFDGTRTVPVLIMTTGT 848

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GLNLQ   N +      W+       +E   + R  + G ++ V V     +N+I+E
Sbjct: 849 GAFGLNLQSV-NRVFIVEPQWNPS-----VESQAIARAIRLGQEQQVLVTRYRVENSIEE 902

Query: 179 LVLQRLRTKSTIQDL 193
            +  +   K  I  +
Sbjct: 903 AMCSQQTHKLKISQM 917


>gi|224101205|ref|XP_002312184.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222852004|gb|EEE89551.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1234

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            V +     ++ V +EK+      I        +    F     +          L +   
Sbjct: 1038 VMFVLNLVYRVVKNEKVLIFCHNIAPIKLFLELFENIFRWQQGKEILVLTGELELFERGR 1097

Query: 100  TIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             + ++ E  G   +L A   +C  G++L    + ++     W+  +      +  + R  
Sbjct: 1098 VMDKFEELGGPSRVLLASITACAEGISLTA-ASRVILLDSEWNPSKT-----KQAIARAF 1151

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G ++ V+VY L+A  T++E   +R   K  +  ++ + 
Sbjct: 1152 RPGQQKMVYVYQLLATGTVEEDKYRRTAWKEWVSRMIFSE 1191


>gi|147678776|ref|YP_001212991.1| DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146274873|dbj|BAF60622.1| hypothetical DNA/RNA helicases [Pelotomaculum thermopropionicum SI]
          Length = 1109

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 20/187 (10%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
             L  + +E     +K  +  ++ +      E      +  E  +     + +       
Sbjct: 449 LVLLAKEVEKQEIETKLNRLREVIDD-EKLRETGTKLLIFTE-SRDTLEYLAEKIGRK-- 504

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                             G  +D       E+   +  ++ A  A+   G+NLQ+   ++
Sbjct: 505 --------WGYTVTIVHGGMGMDARIRAEYEFKN-RAQVMVATEAAG-EGINLQF-CWLM 553

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V + + W+    +Q + RI      + G +  V +Y L+A +T +  +L+ L  K     
Sbjct: 554 VNYDIPWNPNRLEQRMGRI-----HRYGQRNEVHIYNLVAADTREGRILETLFEKLNRMK 608

Query: 193 LLLNALK 199
             L + +
Sbjct: 609 EHLGSDR 615


>gi|72391588|ref|XP_846088.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|74997988|sp|Q57X81|JBP2_TRYBB RecName: Full=Bifunctional helicase and thymine dioxygenase JBP2;
            AltName: Full=J-binding protein 2; Short=TbJBP2;
            Includes: RecName: Full=Probable DNA helicase JBP2;
            Includes: RecName: Full=Thymine dioxygenase JBP2
 gi|62175656|gb|AAX69788.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
 gi|70802624|gb|AAZ12529.1| SNF2 DNA repair protein, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1077

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +    ++ + +   +  L        +GL+L    N ++ +  WW+ +     +E 
Sbjct: 920  DCQQRRRRVVEMFRDDKNVLCLVVSTQIGAYGLDLTA-ANHVILWDTWWNPQ-----VES 973

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              + R  +    +AV  Y L A    D  VL+    K  +   L+N    + +
Sbjct: 974  QAIARCYRQNQSKAVIAYKL-ASGFEDATVLKAQARKRALFKCLINEETSQVV 1025


>gi|308498668|ref|XP_003111520.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
 gi|308239429|gb|EFO83381.1| hypothetical protein CRE_02961 [Caenorhabditis remanei]
          Length = 679

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +        N+  I +      + G G+ L    +++VF  + ++           
Sbjct: 520 PSHQRTALCDSFQNDDSIRVAVLSITAAGVGITLTA-ASVVVFAEIHFNPGYLV-----Q 573

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G K +VFV YLIA+ T D+++   ++ K  +   +
Sbjct: 574 AEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 616


>gi|157961099|ref|YP_001501133.1| helicase domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157846099|gb|ABV86598.1| helicase domain protein [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNIL 132
              D  R    F  G   DK     Q +N       + +L A   +   G+NLQ     L
Sbjct: 661 HTEDGHRRVMTFHGGLGDDKRAEIQQAFNSPPNEHPVRILIAT-DAAREGVNLQGHCADL 719

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + + W+    +Q   RI  T Q     +  V  +Y +  +  +++VL +L  K     
Sbjct: 720 FHYDIPWNPARMEQRNGRIDRTLQS----ETEVRCHYFVYADRDEDIVLDKLVQKVNTIQ 775

Query: 193 LLLNAL 198
             L +L
Sbjct: 776 RELGSL 781


>gi|118400670|ref|XP_001032657.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89287000|gb|EAR84994.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 1326

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
             D  R           ++    + ++ N  K  +      +  HG+ L    + ++F  
Sbjct: 329 KCDFRRQYIRIDGNVKQEERVDLVNQFQNNTKTTVAILSLQAASHGITLTASSH-VIFAE 387

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L+                R  +      V  +YLI ++T+DE +   L  K  +   +L+
Sbjct: 388 LYPTPAVML-----QAEDRSHRINQNNNVLCHYLIGKDTVDEDIFNLLMQKYKVTSSILD 442

Query: 197 ALKKE 201
             +K+
Sbjct: 443 GQRKD 447


>gi|261334482|emb|CBH17476.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 967

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    +  +       L       CG GLNL     ++VF  L W+
Sbjct: 528 PLDYILICGNTAAAQREELLNHFRTSPTCHLAVLSMLVCGVGLNLT-CATMVVFTELDWN 586

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              H Q  +R+      + G   + F+ YL+A+ T D ++   L+ K ++   LL  
Sbjct: 587 PCTHLQCEDRV-----HRIGQSSSCFIKYLLAEGTSDTIIWPLLQNKLSVTKALLED 638


>gi|71755373|ref|XP_828601.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70833987|gb|EAN79489.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 968

 Score = 61.7 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +    +  +       L       CG GLNL     ++VF  L W+
Sbjct: 528 PLDYILICGNTAAAQREELLNHFRTSPTCHLAVLSMLVCGVGLNLT-CATMVVFTELDWN 586

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              H Q  +R+      + G   + F+ YL+A+ T D ++   L+ K ++   LL  
Sbjct: 587 PCTHLQCEDRV-----HRIGQSSSCFIKYLLAEGTSDTIIWPLLQNKLSVTKALLED 638


>gi|319412029|emb|CBY91962.1| SNF2 family protein [Streptococcus pneumoniae]
          Length = 2074

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1702 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1761

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1762 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1813


>gi|261329633|emb|CBH12615.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
            DAL972]
          Length = 1077

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 92   RTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +    ++ + +   +  L        +GL+L    N ++ +  WW+ +     +E 
Sbjct: 920  DCQQRRRRVVEMFRDDKNVLCLVVSTQIGAYGLDLTA-ANHVILWDTWWNPQ-----VES 973

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
              + R  +    +AV  Y L A    D  VL+    K  +   L+N    + +
Sbjct: 974  QAIARCYRQNQSKAVIAYKL-ASGFEDATVLKAQARKRALFKCLINEETSQVV 1025


>gi|167037341|ref|YP_001664919.1| helicase domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115757|ref|YP_004185916.1| helicase domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856175|gb|ABY94583.1| helicase domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928848|gb|ADV79533.1| helicase domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 894

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 66/172 (38%), Gaps = 22/172 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           + + ++   +  + +K       +             F               ++++   
Sbjct: 459 IDFIDQLSMEYKNSQKFIVFTEFLATQQYLK-----DFLESKGYKVAILNGSMSMEERDA 513

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +++E+       +     + G GLNLQ+  NI++ + L W+  + +Q I R+      + 
Sbjct: 514 SLKEFKN--YKDVLISTDAGGEGLNLQF-CNIVINYDLPWNPMKIEQRIGRVD-----RI 565

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI---------QDLLLNALKKET 202
           G +R V V   + ++T++  V + L  K  +            +L++++ E 
Sbjct: 566 GQERDVLVLNFMLKDTVEFRVREVLEEKLRVIYEQFGVDKMGDILDSVQSEM 617


>gi|67465792|ref|XP_649054.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56465406|gb|EAL43665.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 837

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 18/164 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RL 84
           + N  +   +E+         +    + + +     +++   +   L            L
Sbjct: 436 IDNEIIKMVDEETINLWPKLTVLLKLLKMCEKTNEKVLLFSQYQRTLDSIADLLQSKDIL 495

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                           ++ +N      +L         GLN+     +++F   W     
Sbjct: 496 FLRIDGDLDDGLRKERLRRFNHMSSWGVLLMTIRVGACGLNITGASRVVIFDEGW----- 550

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               I    V R  + G K+ V  Y ++   T++E + +R   K
Sbjct: 551 --STIGNQAVDRAYRIGQKKDVVSYRIVTCGTLEEKMYRRQVHK 592


>gi|322376606|ref|ZP_08051099.1| SNF2 family protein [Streptococcus sp. M334]
 gi|321282413|gb|EFX59420.1| SNF2 family protein [Streptococcus sp. M334]
          Length = 2077

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1705 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1764

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1765 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1816


>gi|182684275|ref|YP_001836022.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
 gi|182629609|gb|ACB90557.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
          Length = 2077

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1705 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1764

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1765 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1816


>gi|301775627|ref|XP_002923234.1| PREDICTED: LOW QUALITY PROTEIN: e1A-binding protein p400-like
            [Ailuropoda melanoleuca]
          Length = 2910

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 26   ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
              +                E    +    K++AL ++++K  +    +++       L  
Sbjct: 1706 LQRMTALR------SLRFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMVLMLDI 1759

Query: 84   LQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNIL 132
            L+                    +    ++ +N + +I        S   G++L    + +
Sbjct: 1760 LEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCAILSTHSRATGVSL-VEADAV 1818

Query: 133  VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            VF+    +      +++        + G ++ V +Y L++ N+I+E +L+
Sbjct: 1819 VFYDNDLNP-----VMDAKAQEWCERIGRRKDVHIYRLVSGNSIEEKLLK 1863


>gi|298385364|ref|ZP_06994922.1| SNF2 family protein [Bacteroides sp. 1_1_14]
 gi|298261505|gb|EFI04371.1| SNF2 family protein [Bacteroides sp. 1_1_14]
          Length = 2373

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
              G T+ K     ++ N G++ ++     + G G+N+Q   + L+         ++ Q 
Sbjct: 726 MRSGMTVKKKLEIFEKVNRGEVRVILGSTFTLGTGVNIQERLHTLIHLDAPNRPMDYTQR 785

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI           + V +     ++++D    QRL+TK  I D ++N 
Sbjct: 786 NGRILRQGNLHKDMNKPVRILRFGVEDSLDVTAYQRLKTKGAIADSIMNG 835


>gi|225856813|ref|YP_002738324.1| SNF2 family protein [Streptococcus pneumoniae P1031]
 gi|225725125|gb|ACO20977.1| SNF2 family protein [Streptococcus pneumoniae P1031]
          Length = 2076

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1704 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1763

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1764 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1815


>gi|157870051|ref|XP_001683576.1| DNA helicase [Leishmania major strain Friedlin]
 gi|68126642|emb|CAJ04339.1| putative DNA helicase [Leishmania major strain Friedlin]
          Length = 1029

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 + G  +   + YL+A+ T D ++   L+TK ++   +    K
Sbjct: 580 -----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFETSK 622


>gi|75758379|ref|ZP_00738502.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228904786|ref|ZP_04068840.1| Superfamily II DNA/RNA helicase, SNF2 [Bacillus thuringiensis IBL
           4222]
 gi|74494105|gb|EAO57198.1| Superfamily II DNA/RNA helicases, SNF2 family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228854800|gb|EEM99404.1| Superfamily II DNA/RNA helicase, SNF2 [Bacillus thuringiensis IBL
           4222]
          Length = 595

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 20/184 (10%)

Query: 32  CLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            LQ+  +G   +  E   + V   K+  L  I ++   A I     F            +
Sbjct: 398 LLQMGQSGMSKHYLEHIPENVKSPKLTELVDICKERIEAGINKIVIFTQFAKMQTLIDEE 457

Query: 91  -------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          +  +         + +         +  +GLN+Q+  N L+ +  
Sbjct: 458 LSTLGKVALLNGSMSSAQRQEQLETFKADPEYKFFVLT-DAGNYGLNIQF-ANTLINYDS 515

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+    +Q   R+             V +  L+   TIDE + + L  K  +   ++  
Sbjct: 516 PWNPATFEQRAGRVHRIGSTH----NVVDIISLVTMGTIDEKIQETLEEKRKLGVAVIER 571

Query: 198 LKKE 201
            + E
Sbjct: 572 NQSE 575


>gi|297471769|ref|XP_002685457.1| PREDICTED: zinc finger, RAN-binding domain containing 3 [Bos
           taurus]
 gi|296490526|gb|DAA32639.1| zinc finger, RAN-binding domain containing 3 [Bos taurus]
          Length = 1074

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 321 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVPSSERIHL 380

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 + +  +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 381 VNQFQKDPETRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 434

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 435 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKL 477


>gi|109104419|ref|XP_001101449.1| PREDICTED: zinc finger Ran-binding domain-containing protein
           3-like, partial [Macaca mulatta]
          Length = 958

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCT 100
            K  A++  I+       +    F   L+                     G +  +    
Sbjct: 201 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGGVSSSERIHL 260

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 261 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 314

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 315 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 357


>gi|307136203|gb|ADN34041.1| chromatin remodelling complex ATPase chain isw-1 [Cucumis melo
           subsp. melo]
          Length = 385

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +         +  I        + G GL L    + ++F  L W   +        
Sbjct: 237 PPAMRQALVSDFQQKDSIMAAVLSIKAGGVGLTLTA-ASTVIFTELSWTPGDLI-----Q 290

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              R  + G   +V ++YL+A +T+D+++   +++K      +L+  +
Sbjct: 291 AEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGEE 338


>gi|126462608|ref|YP_001043722.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104272|gb|ABN76950.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 1170

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T ++    ++ + + +  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 540 HGGVTREERRKVVERFMQDRDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 598

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 599 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 642


>gi|311272141|ref|XP_003133319.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger Ran-binding
           domain-containing protein 3-like [Sus scrofa]
          Length = 1044

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCT 100
            K  A+   I+       +    F   L+ LQ                       +    
Sbjct: 311 AKAGAVRDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIESKTRYVRIDGSVPSSERIHL 370

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  + +  +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 371 VNQFQKDPETRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 424

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 425 GQCSSVNIHYLIANGTLDTLMWAMLNRKAQVTGSTLNGRKEKL 467


>gi|293190852|ref|ZP_06609014.1| helicase/SNF2 domain protein [Actinomyces odontolyticus F0309]
 gi|292820751|gb|EFF79713.1| helicase/SNF2 domain protein [Actinomyces odontolyticus F0309]
          Length = 955

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ +     L     +   G+NLQ+  ++LV + L W+ +  +Q I R+   
Sbjct: 489 DRRKALVDEFRKRGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRVEQRIGRV--- 542

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  + +E +LQ L  K  +   +  A
Sbjct: 543 --HRFGQKHNVIVVNFSNKGNVAEERILQLLTEKFKLFTSVFGA 584


>gi|242015993|ref|XP_002428623.1| snf2 histone linker PHD ring helicase, putative [Pediculus humanus
            corporis]
 gi|212513286|gb|EEB15885.1| snf2 histone linker PHD ring helicase, putative [Pediculus humanus
            corporis]
          Length = 1709

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 14/143 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PC 99
                   D  +++L  +  +     +++   +   L  L+ A  Q     +         
Sbjct: 1254 GDHSTKVDGIVRSLLSLKREDENVKVLIFSTWGVVLKILEVALTQNNISFRRMPGHNYQI 1313

Query: 100  TIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             ++++ +  + +  L    +    GLNL    N +       +        E   V R  
Sbjct: 1314 HLKQFKDPNLKVTALLLPISWGSKGLNLTE-ANHVFLVEPIMNPA-----EELQAVGRVH 1367

Query: 158  QAGFKRAVFVYYLIAQNTIDELV 180
            + G  +   V+  + + TI+E +
Sbjct: 1368 RIGQTKKTTVHKFLIKGTIEEKI 1390


>gi|296134095|ref|YP_003641342.1| helicase domain protein [Thermincola sp. JR]
 gi|296032673|gb|ADG83441.1| helicase domain protein [Thermincola potens JR]
          Length = 469

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
              ++++             + ++L      F      ++   T   +      ++    
Sbjct: 311 HPGKILVFTEYMQTQFFIGRWLNELGINFIHFNGKLKRNQKEYTKWLFQNKDYRVMICT- 369

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            S   GLN Q+  N++V F L W+  + +Q I RI    Q        V+VY  + Q+T+
Sbjct: 370 DSGSQGLNFQF-CNVIVNFDLPWNPMKVEQRIGRIDRLGQTAD----EVYVYNFVLQDTV 424

Query: 177 DELVLQRLRTKSTIQDLLLNAL 198
           +E +   L +K  +    +  L
Sbjct: 425 EEKIFHILSSKIALFKECIGEL 446


>gi|169869799|ref|XP_001841456.1| hypothetical protein CC1G_12776 [Coprinopsis cinerea okayama7#130]
 gi|116497465|gb|EAU80360.1| hypothetical protein CC1G_12776 [Coprinopsis cinerea okayama7#130]
          Length = 1321

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +D+    +  +N + +  +L         GLNL    N+++F    W  ++     ER 
Sbjct: 870 PIDQRSSIVATFNTDPEYRVLIFS-KVGATGLNLTR-ANVVLFLDQPWSAQD-----ERQ 922

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R  +    R V V +++A++T D  +    R K  + D  LN
Sbjct: 923 IIGRAYRQRQTREVTVIHILAEDTADITLSLLARGKKDMLDAFLN 967


>gi|322385340|ref|ZP_08058985.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321270599|gb|EFX53514.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 2077

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1705 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1764

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 1765 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 1816


>gi|85085403|ref|XP_957501.1| hypothetical protein NCU04424 [Neurospora crassa OR74A]
 gi|28918593|gb|EAA28265.1| predicted protein [Neurospora crassa OR74A]
          Length = 405

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 15/165 (9%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
           LQ  +  V   E      +  + I     I         + +    +   ++ +A    +
Sbjct: 234 LQPGSHFVNAGESPDPTGLLGDAIADTIDINSSLQTD--LFSTKLKAVRKQVLEAGTGTK 291

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + +    I+ +  + +  +L     +   GLNL    + +      W+       +E  
Sbjct: 292 HISERTRLIRTFQGDPQAFILIMSVGTGAVGLNLTA-ASHVHVVEPHWNPS-----VEAQ 345

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R  + G  + V V   I + T+++        K T+  L  +
Sbjct: 346 AIARAVRMGQTKNVLVTRYIMKRTVED------TKKQTLAKLTFD 384


>gi|322492113|emb|CBZ27387.1| putative DNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1087

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 513 PPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFT-CASTVVFTELDWNPSTHLQCEDRV 571

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G      + YL+A+ T D ++   L+TK ++   +  
Sbjct: 572 -----HRIGQAHPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 611


>gi|168697933|ref|ZP_02730210.1| Helicase, C-terminal [Gemmata obscuriglobus UQM 2246]
          Length = 1390

 Score = 61.7 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +  K     ++   G + +L    +  G G N+Q     +      W   E +Q   RI
Sbjct: 1107 DSDAKKQALFEKVRNGAVRVLIGSTSKMGTGTNVQKRLVAMHHLDAPWKPAEVEQRDGRI 1166

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  Q      V +Y  + + + D  + Q L TK+     ++
Sbjct: 1167 LR----QGNQNEEVAIYRYVTEGSFDAYMWQALETKAKFIGQIM 1206


>gi|219666703|ref|YP_002457138.1| helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536963|gb|ACL18702.1| helicase domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 1168

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 34/218 (15%)

Query: 12  YCDLQGENIEAFNSA----------SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
             D + + ++   +A          +   K  ++AN      E++ W E+         +
Sbjct: 432 LEDTEEKVVDQATAAQTIQELEAEIATLKKLERMANDVRQSGEDRKWDELSRLLQDNDTM 491

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEW-NEG 107
                    +I+       L  L                   G   D+     + +  + 
Sbjct: 492 FGTDGLREKLIIFTEHRDTLRYLTDKIRSLLGNEEAVVTIHGGLLRDERRKVEELFKQDK 551

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++ +L A  A+   G+NLQ   +++V + L W+    +Q   RI      + G      +
Sbjct: 552 EVRILIATDAAG-EGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHL 604

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + L+++ T + +V QRL  K   +     ALK +   V
Sbjct: 605 WNLVSKETREGMVFQRLFEKLEQER---EALKGKVFDV 639


>gi|73536510|ref|XP_847679.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438592|emb|CBZ12351.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1576

 Score = 61.7 bits (148), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            C  +  N     +L     + G G+ L    +  +   + W+  +           R  
Sbjct: 547 RCISELQNNDACRVLLCSVRAGGVGIKLTA-ASHCILLDVSWNPTDDM-----QATYRLY 600

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
           + G  R V +Y L    T + +V      +S +Q  +  ++  +++  H
Sbjct: 601 RYGQLRPVNIYRLATWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|242222574|ref|XP_002477001.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723673|gb|EED77797.1| predicted protein [Postia placenta Mad-698-R]
          Length = 430

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             I E+N+      +      + G G+N+    +I+V +    +        +   + R 
Sbjct: 1   MAIDEYNKPDSDKFIFLLTTRAGGLGINVTT-ADIVVLYDSDLN-----SRADLQAMDRA 54

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            + G  + V+V+  I + +++E +L+R      +  L++   +
Sbjct: 55  HRIGQTKQVYVFRFITEGSVEERMLERTAQALRLDQLVMQQGR 97


>gi|238580466|ref|XP_002389294.1| hypothetical protein MPER_11594 [Moniliophthora perniciosa FA553]
 gi|215451409|gb|EEB90224.1| hypothetical protein MPER_11594 [Moniliophthora perniciosa FA553]
          Length = 97

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +     WW     Q+ IE   + R  + G  + V VY LI++NT++  VL     K 
Sbjct: 1   ANNVYLMDPWW-----QEGIESQAIDRVNRIGQTKPVHVYQLISENTVESRVLDIQERKK 55

Query: 189 TIQDLLLNALKK 200
            +     + +K+
Sbjct: 56  NLIKQAFSGMKR 67


>gi|60544832|gb|AAX22754.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
          Length = 705

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGN 130
           I+ Y+F+     + +     +  ++          +    +      + G G+NL    +
Sbjct: 530 IMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTA-AD 588

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + +   W+ +     ++   + R  + G  + V VY L    +I+   +  L TK
Sbjct: 589 TCILYDSDWNPQ-----MDLQAMDRCHRIGQTKPVHVYRLSTAQSIE---IHLLSTK 637


>gi|297668526|ref|XP_002812483.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Pongo abelii]
          Length = 1024

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 266 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 325

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 326 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 379

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 380 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|195472837|ref|XP_002088705.1| GE11268 [Drosophila yakuba]
 gi|194174806|gb|EDW88417.1| GE11268 [Drosophila yakuba]
          Length = 755

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +         +    +      +C  G+ L     I+VF  L W+             +R
Sbjct: 574 RSDSVDTFQKKSSCKVALLSLKACNSGITLTA-AEIIVFAELDWNPSTL-----AQAESR 627

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V   YL+A NT D+ +   L+ K  +   +
Sbjct: 628 AHRIGQTKPVICRYLMAHNTADDTIWNMLKNKQEVLSKV 666


>gi|55980989|ref|YP_144286.1| hypothetical protein TTHA1020 [Thermus thermophilus HB8]
 gi|55772402|dbj|BAD70843.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 1110

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 21/197 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + +RE    L      A  +       K  +L        E++  ++  ++ +   E  
Sbjct: 445 EELERE-IAQLDELIALARRAERLEIETKLRKL----REVMEDERLQQTGEKLLIFTESR 499

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
                    +  + +         +   G  LD       E+ E +  ++     + G G
Sbjct: 500 ETLEYLVEKLRGWGY------SVVSLHGGMDLDARIRAEHEFRE-RAQVMV-STEAGGEG 551

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +NLQ+  +++V + + W+    +Q + R+      + G  + V +Y L+A +T +  VL+
Sbjct: 552 INLQF-CSLMVNYDIPWNPNRLEQRMGRV-----HRYGQTKEVHIYNLVALDTREGKVLE 605

Query: 183 RLRTKSTIQDLLLNALK 199
            L  K       L + +
Sbjct: 606 ALFRKLREIQEALGSDR 622


>gi|119632037|gb|EAX11632.1| zinc finger, RAN-binding domain containing 3, isoform CRA_d [Homo
           sapiens]
          Length = 458

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 266 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 325

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 326 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 379

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 380 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|190890732|ref|YP_001977274.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
           652]
 gi|190696011|gb|ACE90096.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli CIAT
           652]
          Length = 1324

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + +    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 488 RSALVDYFRDEG-QIMIAT-EAGAEGINLQF-CSLVVNYDLPWNPQRVEQRIGRC----- 539

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   I  +N  D+ V Q L  K  + + +  A
Sbjct: 540 HRYGQKHDVVVVNFINRKNEADQRVYQLLSEKFRLFEGVFGA 581


>gi|160942833|ref|ZP_02090073.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
            M21/2]
 gi|158445885|gb|EDP22888.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1925

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +  +      T +K      +   G++ +L    A  G G N+Q     +    + W   
Sbjct: 1528 QEIEFIHNADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPS 1587

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q   RI      Q    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 1588 DMTQRNGRIIR----QGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 1638


>gi|313115905|ref|ZP_07801333.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621773|gb|EFQ05300.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1922

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            +  +      T +K      +   G++ +L    A  G G N+Q     +    + W   
Sbjct: 1527 QEIEFIHNADTENKKAELFSKVRSGQVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPS 1586

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +  Q   RI      Q    + V+VY  + ++T D  + Q L  K      ++ +
Sbjct: 1587 DMTQRNGRIIR----QGNQNKQVYVYNYVTESTFDAYLYQTLENKQKFISQIMTS 1637


>gi|284046270|ref|YP_003396610.1| helicase [Conexibacter woesei DSM 14684]
 gi|283950491|gb|ADB53235.1| helicase domain protein [Conexibacter woesei DSM 14684]
          Length = 726

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T++ + +   P L                 + + F  L W        +      R 
Sbjct: 596 REATVRAFQQPDGPQLIVAATQVAAQGITLTRASNVAFLELEWTPA-----MHDQAEDRC 650

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G   AV  +YL+A  TIDE +   ++ K  I   + + 
Sbjct: 651 HRIGQHDAVTAWYLLAARTIDETMAHLIQRKRGIVAAVTDG 691


>gi|308273413|emb|CBX30015.1| hypothetical protein N47_D28240 [uncultured Desulfobacterium sp.]
          Length = 928

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----------DPC 99
             D  I+A+E I  +     +I+   +   L  L++   +    +K              
Sbjct: 508 KFDTLIRAIEQIRRENKNDKMIIFTQYLETLYYLKEELGKYYPPEKIAILKGGPLEDKIA 567

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + + + +          ++ G G+NLQ    +L  + L W+    +Q I RI      + 
Sbjct: 568 SCESFWDESGAQFLISTSAGGEGINLQ-VCRLLFNYDLPWNPMAVEQRIGRI-----HRY 621

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
           G      VY L+A+ TI+E V + L  K   I   +
Sbjct: 622 GQTETAQVYNLVAEETIEEQVYKILEEKLLEIASAI 657


>gi|75812890|ref|YP_320507.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75705646|gb|ABA25318.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 900

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +K     +++N+G++        + G G++LQ     L+   L W+     Q + R+  
Sbjct: 524 REKRENAAEKFNKGEVR-FLISTEAGGEGIDLQENCYSLIHVDLPWNPMRLHQRVGRL-- 580

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               + G KRAV V  L    T++ L+  +L  K    D ++ +L++
Sbjct: 581 ---NRYGQKRAVEVITLRNPQTVETLIWDKLNRKI---DNIMQSLQQ 621


>gi|307110467|gb|EFN58703.1| hypothetical protein CHLNCDRAFT_34017 [Chlorella variabilis]
          Length = 701

 Score = 61.3 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + R  + G +R V VY L+ + T++E ++   R K  +   L+NA   
Sbjct: 570 QAMDRAHRLGQQRTVNVYRLLVRGTVEEQIMSLQRFKLDVAATLVNADNA 619


>gi|25395804|pir||F88481 protein C16A3.1 [imported] - Caenorhabditis elegans
          Length = 866

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +       +  +  I +      + G G+ L    +++VF  + ++           
Sbjct: 704 PSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTA-ASVVVFAEIHFNPGYLV-----Q 757

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G K +VFV YLIA+ T D+++   ++ K  +   +
Sbjct: 758 AEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 800


>gi|119632036|gb|EAX11631.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
 gi|119632038|gb|EAX11633.1| zinc finger, RAN-binding domain containing 3, isoform CRA_c [Homo
           sapiens]
          Length = 1019

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 261 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 320

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 321 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 374

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 375 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 417


>gi|171681303|ref|XP_001905595.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940610|emb|CAP65838.1| unnamed protein product [Podospora anserina S mat+]
          Length = 213

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            R+ +    ++ ++    +P+L     +   GLN       +      W+       +E 
Sbjct: 47  SRSKNDRRASLHDFRTKDVPVLLMTFGTGSMGLNDLNVARRVHILEPQWNPS-----VEN 101

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             + R  + G  R V V   + + +I+E
Sbjct: 102 QAIGRVSRFGQTREVTVIRYVMKKSIEE 129


>gi|114762663|ref|ZP_01442097.1| possible ATP-dependent RNA helicase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544573|gb|EAU47579.1| possible ATP-dependent RNA helicase [Roseovarius sp. HTCC2601]
          Length = 978

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G T ++    ++ + + +  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 524 YGGVTREERRKVVERFMQDRDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 582

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A++T +  V  RL  K       L  
Sbjct: 583 GRI-----HRIGQTEVCHLWNLVAKDTREGDVYARLLEKLEAAREALGG 626


>gi|218200306|gb|EEC82733.1| hypothetical protein OsI_27432 [Oryza sativa Indica Group]
          Length = 1770

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 97   DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N    GK  +L A   +C  G++L  G + LV     W+  +      R  +
Sbjct: 1635 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKT-----RQAI 1688

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R  + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 1689 ARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 1730


>gi|171684657|ref|XP_001907270.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942289|emb|CAP67941.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1139

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 66/190 (34%), Gaps = 12/190 (6%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             K Q +    L    ++    A+   K   ++  +            + E     ++II 
Sbjct: 834  RKVQMQQAPSLPTAEVKGTEIAAPLAKTRLISTASAKLSYLIDQVIKYQE---HEQIIIF 890

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGL 123
              N             L      + +G +  +    +  +N   K  +L         GL
Sbjct: 891  YENDNVAYYLAGVLEILQVQHLIYARGLSPQRRADYVATFNQSSKFRVLLMDITQAAFGL 950

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            ++    + + F +   + +     +E   + R R+   ++ V V  L+ +++++E++++R
Sbjct: 951  DM-KSASRIYFINPVLNPQ-----VEAQAIGRARRISQQKPVTVETLVLKDSVEEVIVRR 1004

Query: 184  LRTKSTIQDL 193
               K   Q  
Sbjct: 1005 --RKEMTQAE 1012


>gi|116329390|ref|YP_799110.1| DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330009|ref|YP_799727.1| DNA/RNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122134|gb|ABJ80177.1| DNA/RNA helicase Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123698|gb|ABJ74969.1| DNA/RNA helicase Superfamily II [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 951

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 18/161 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---------ARLQKAFPQGRTLDK 96
           K  ++    K+K   + + K   +  I+   F +            ++           K
Sbjct: 458 KIKEDKKSIKLKETILKLRKEGHSKFIIFTQFRTTQDFLASVLSDFQVTLFHGSLGADAK 517

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           +   ++   + +I        + G G NLQ+  N+L  + L W   + +Q I RI     
Sbjct: 518 ENAIVEFKTKTEI---LICTEAGGEGRNLQF-ANVLFNYDLPWSPLKIEQRIGRI----- 568

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  VF++   +++T+ E +L+ L  K  + +  + +
Sbjct: 569 HRFGQKDNVFIFNFASKDTVAERILEVLTNKIRLFEESIGS 609


>gi|325848756|ref|ZP_08170266.1| SNF2 family N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480400|gb|EGC83462.1| SNF2 family N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 478

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHF------------NSDLARLQKAFPQGRTLDKDPCT 100
           + ++KA   IIE+     +IV   +             +        F       +    
Sbjct: 293 NYRLKAFMDIIEEFQG-KVIVYCQYQIEAKTIVDLLNKNYGENSAVLFDGTINTKQRNLN 351

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+ +  G    L A+ +  G  LNLQ+  N +++++  WD    +Q  +RI      + G
Sbjct: 352 IERFRNG-SRFLVANKSCAGFSLNLQF-CNQIIYYNNDWDYGTREQSEDRI-----NRIG 404

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            +   +   +I   T++E ++  L  K  + +  L  LK 
Sbjct: 405 QEYKCYYLDIICAGTVEEYIMDCLSKKEALGNRFLKELKG 444


>gi|288556434|ref|YP_003428369.1| SNF2 family DNA/RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547594|gb|ADC51477.1| SNF2 family DNA/RNA helicase [Bacillus pseudofirmus OF4]
          Length = 855

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    I+++   +I +L  +P + G  ++L +  +  ++    ++L    Q  +RI  
Sbjct: 729 QEERDAIIEQFLNREIDILITNPHTLGESVSLHHTCHDAIYLEYSFNLTHLLQSRDRIHR 788

Query: 154 TRQRQAGFKRAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLLLN 196
              ++  + +    Y+L+ Q       TIDE + QRL  K       + 
Sbjct: 789 LGLKEDDYTQ---YYFLMLQGQAGERSTIDERIYQRLMVKEERMLSAIE 834


>gi|28493085|ref|NP_787246.1| DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476125|gb|AAO44215.1| DNA helicase [Tropheryma whipplei str. Twist]
          Length = 698

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 17/196 (8%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           ++ ++  A N  S  V+ + +        +          KI      IE  N    +  
Sbjct: 496 VESKDSSALNIFS-IVRKIGITKAP-LAIDFTIQMLDSVGKIVFFAKHIEVMN----MAE 549

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F     R           D+         +    +      + G G+NLQ   N+++ 
Sbjct: 550 EMFCQQGIRSVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASNVVLS 609

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-----ST 189
              W   E+         + R  + G    V  + ++   T+D  +   + +K      +
Sbjct: 610 ELSWTAAEQG------QAIDRLHRIGQTEPVTAWRILGAGTVDIRMAALVDSKSNDAILS 663

Query: 190 IQDLLLNALKKETIHV 205
           +    +  +++E++H+
Sbjct: 664 LDGGDMREVQQESLHI 679


>gi|52545910|emb|CAE45796.2| hypothetical protein [Homo sapiens]
          Length = 192

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + R  + G  + V VY LI + TI+E +LQR + KS IQ ++++ 
Sbjct: 1   MDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISG 45


>gi|119356468|ref|YP_911112.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119353817|gb|ABL64688.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 1169

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 10/114 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              D+        ++ +I +L A  A+   G+NLQ   N++V + L W+    +Q   RI
Sbjct: 537 HRDDRRKAQELFRSDPEIRVLVATDAAG-EGINLQN-ANLMVNYDLPWNPNRLEQRFGRI 594

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 + G +    ++ L+A+ T +  V  RL  K  +     +ALK E  +V
Sbjct: 595 -----HRIGQQEVCHLWNLVAKETREGDVYFRLLEKLQVVS---DALKGEVFNV 640


>gi|62860046|ref|NP_115519.2| zinc finger Ran-binding domain-containing protein 3 [Homo sapiens]
 gi|74741477|sp|Q5FWF4|ZRAB3_HUMAN RecName: Full=Zinc finger Ran-binding domain-containing protein 3
 gi|66840172|gb|AAH89429.2| Zinc finger, RAN-binding domain containing 3 [Homo sapiens]
          Length = 1079

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 321 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 380

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 381 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 434

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 435 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|28572293|ref|NP_789073.1| helicase regulator [Tropheryma whipplei TW08/27]
 gi|28410424|emb|CAD66810.1| putative helicase regulator [Tropheryma whipplei TW08/27]
          Length = 690

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 17/196 (8%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           ++ ++  A N  S  V+ + +        +          KI      IE  N    +  
Sbjct: 488 VESKDSSALNIFS-IVRKIGITKAP-LAIDFTIQMLDSVGKIVFFAKHIEVMN----MAE 541

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
             F     R           D+         +    +      + G G+NLQ   N+++ 
Sbjct: 542 EMFCQQGIRSVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASNVVLS 601

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-----ST 189
              W   E+         + R  + G    V  + ++   T+D  +   + +K      +
Sbjct: 602 ELSWTAAEQG------QAIDRLHRIGQTEPVTAWRILGAGTVDIRMAALVDSKSNDAILS 655

Query: 190 IQDLLLNALKKETIHV 205
           +    +  +++E++H+
Sbjct: 656 LDGGDMREVQQESLHI 671


>gi|159466410|ref|XP_001691402.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158279374|gb|EDP05135.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 1610

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 25/177 (14%)

Query: 9    RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
            +     ++  +       +   + + L N             V     +  + +      
Sbjct: 1161 KTSILQVEAADELMTKIGALLRRLVWLRNH-----RPAEKSLVFS---QWADALQIVERG 1212

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
                       +  R              P      ++    +          GL L   
Sbjct: 1213 LRANDIGCVTLESGRRM-----------RPAMNAFLHDPACRVFLLSLRQGAAGLTL-VR 1260

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             N +       D    Q       V R  + G  R V V  L+  ++++  V+  L+
Sbjct: 1261 ANHVFLLEPALDPAIEQ-----QAVARVHRIGQTRDVSVTRLLVDDSVERHVMAMLK 1312


>gi|39935287|ref|NP_947563.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|39649139|emb|CAE27659.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
          Length = 1172

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    I+ + + +  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 540 HGGVSREERRKVIERFMQDRDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 598

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 599 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 642


>gi|194336225|ref|YP_002018019.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308702|gb|ACF43402.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1169

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L GE               Q A G V   +++ W E+        ++        
Sbjct: 448 QTIAELDGE-------IFILQALEQQAKGLVASGKDRKWDELSRILQNEPQMRDAGGRMR 500

Query: 70  PIIVAYHFNSDLARLQK--------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            II+       L  L +                      D+        ++ +I +L A 
Sbjct: 501 KIIIFSEHRDTLNYLHEKIAGVLGSHDAIVVIHGAVHRDDRRKSQELFRSDPEIRVLVAT 560

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G G+NLQ   N++V + L W+    +Q   RI      + G +    ++ L+A+ T
Sbjct: 561 -DAAGEGINLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQQEVCHLWNLVAKET 613

Query: 176 IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            +  V  RL  K  +      ALK E  +V
Sbjct: 614 REGDVYFRLLEKLQVVS---EALKGEVFNV 640


>gi|119632040|gb|EAX11635.1| zinc finger, RAN-binding domain containing 3, isoform CRA_f [Homo
           sapiens]
          Length = 1017

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 261 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 320

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 321 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 374

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 375 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 417


>gi|289621598|emb|CBI52381.1| unnamed protein product [Sordaria macrospora]
          Length = 501

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 23/104 (22%)

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +    +  +  +    +L    +                              +E  
Sbjct: 380 PQRERQNVVNRFRQDPSCRVLLLTLSCG----------------------AVGNPTLEEQ 417

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R  + G  R V       +++ +E V++    K  +  +LL
Sbjct: 418 ALARIHRMGQTREVTTVRFYVRDSFEERVMEVQEKKRKLVTVLL 461


>gi|147776792|emb|CAN74674.1| hypothetical protein VITISV_020205 [Vitis vinifera]
          Length = 278

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 17/149 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT----- 93
                E ++W E        LE+    +  +  I+   + + L  LQ    +        
Sbjct: 121 PHARLENRNWVESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRL 180

Query: 94  -----LDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                  +    I+++  E  I +L     + G G+NL    +       WW+       
Sbjct: 181 DGTLNQQQREKVIKQFSEESHILVLLMSLKAGGVGINLMA-ASHAFVLDPWWNPA----- 234

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
           +E   V R  + G  + V +   IA+ TI
Sbjct: 235 VEEQAVMRIHRIGQTKRVMIKRFIAKGTI 263


>gi|154244631|ref|YP_001415589.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154158716|gb|ABS65932.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1167

 Score = 61.3 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGK 108
           +   K +   +I  +       +     + L   +       G + ++    ++ + + K
Sbjct: 501 IDSAKNRRKLIIFTEPKDTLNYLLEKVRARLGNPEAVDVIHGGVSREERRKVVERFMQDK 560

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             L+     + G G+NLQ  G+++V + L W+  + +Q   RI      + G      ++
Sbjct: 561 DLLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRFGRI-----HRIGQTEVCHLW 614

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            L+A +T +  V  RL  K       L  
Sbjct: 615 NLVAADTREGEVYARLLEKLEAAREALGG 643


>gi|258511218|ref|YP_003184652.1| helicase domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477944|gb|ACV58263.1| helicase domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1170

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 38/225 (16%)

Query: 3   QYHKFQRE---------LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 53
           +Y + + E            +L+ E            +   LA+  V  +++  W ++  
Sbjct: 436 EYEELEDEIASQATAAQTIAELEQEIRT-------LERLEALAHQLVLSNQDSKWTQLST 488

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCT 100
                 E+  +  N   +I+       L  LQ+                 G   D+    
Sbjct: 489 LLHDEPEMRDKSGNRRKLIIFTEHRDTLNYLQRKMEGFLGRPDAIVAIHGGTKRDERRKI 548

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +++      L+     + G G+NLQ   N+L+ + L W+    +Q   RI      + G
Sbjct: 549 QEKFWHDPDTLILLATDAAGEGVNLQN-ANLLINYDLPWNPNRLEQRFGRI-----HRIG 602

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                +++ L+A  T +  V QRL  K  ++     ALK     +
Sbjct: 603 QTEVCYMWNLVAAKTREGEVFQRLFEKLKVER---EALKGRVFDI 644


>gi|170061901|ref|XP_001866436.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880007|gb|EDS43390.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 706

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWN-EGKIPLLF 113
           +K  +  +  A+   ++ A     D  ++      G T        + ++  +       
Sbjct: 502 LKEGQKFLIFAHHIKMLDAVSRELDKLKVDHIRIDGTTRSDVRSELVNKFQTKDACRAAI 561

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +C  G+ L     +++F  L W+             +R  + G + AV V YL+A+
Sbjct: 562 LSLKACNAGITLTA-AQLVIFAELDWNPSTL-----AQAESRAHRIGQEGAVLVRYLLAK 615

Query: 174 NTIDELVLQRLRTKSTIQDL 193
            T D+++   L+ K T+ + 
Sbjct: 616 GTADDIIWTMLQKKQTVLNK 635


>gi|117646914|emb|CAL37572.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 321 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 380

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 381 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 434

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 435 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|119632034|gb|EAX11629.1| zinc finger, RAN-binding domain containing 3, isoform CRA_a [Homo
           sapiens]
          Length = 1030

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 266 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 325

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 326 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 379

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 380 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 422


>gi|156407998|ref|XP_001641644.1| predicted protein [Nematostella vectensis]
 gi|156228783|gb|EDO49581.1| predicted protein [Nematostella vectensis]
          Length = 532

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----- 92
           GA+     +            +  ++        +V  H    L  +       +     
Sbjct: 355 GALLNYFCETSASKIAAVRNYVLDLL--EGGHKFLVFGHHQDMLDAISDCLMHKKYSYIR 412

Query: 93  -----TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   K      ++  +    +      +   GL L   G  +VF  L+W+      
Sbjct: 413 IDGKTPSSKRQMLCDQFQKDKNTVVAVLSITAANTGLTLTE-GTAVVFAELFWNPGALV- 470

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                   R  + G K +V ++YL+A+ T D+ +   ++ K  +   
Sbjct: 471 ----QAEDRVYRIGQKNSVNIHYLVAKGTADDYLWPLIQHKLDVLSK 513


>gi|117646930|emb|CAL37580.1| hypothetical protein [synthetic construct]
          Length = 1077

 Score = 61.3 bits (147), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 321 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 380

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 381 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 434

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 435 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|309811323|ref|ZP_07705110.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308434630|gb|EFP58475.1| SNF2 family N-terminal domain protein [Dermacoccus sp. Ellin185]
          Length = 842

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +  +       +     +   G+NLQ+  ++L+ + L W+ +  +Q I R+   
Sbjct: 497 DRRKALVDYFRTEGT--IMIATEAAAEGINLQF-CSMLINYDLPWNPQRVEQRIGRV--- 550

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  I ++ +L+ L  K  +   +  A
Sbjct: 551 --HRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGA 592


>gi|301770701|ref|XP_002920769.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3-like
           [Ailuropoda melanoleuca]
          Length = 1087

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCT 100
            K  A++  I+       +    F   L+                          +    
Sbjct: 336 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSSERIHL 395

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +    +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 396 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 449

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YL+A  T+D L+   L  K+ +    LN  K++ 
Sbjct: 450 GQCTSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQL 492


>gi|297279766|ref|XP_001087747.2| PREDICTED: DNA repair and recombination protein RAD54-like, partial
           [Macaca mulatta]
          Length = 185

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 42/177 (23%)

Query: 32  CLQLANGAVYYDEEKHWKEVH---------------------DEKIKALEVII---EKAN 67
             +L N      ++   +E                         K+  L+ I+      +
Sbjct: 12  LKKLCNHPALIHDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSCS 71

Query: 68  AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--LLFAH 115
           +  +++  ++   L   +K                ++ K    ++ +N    P  +    
Sbjct: 72  SDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLS 131

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             + G GLNL  G N LV F   W+        +   + R  + G K+  ++Y L++
Sbjct: 132 SKAGGCGLNL-IGANRLVMFDPDWNPAN-----DEQAMARVWRDGQKKTCYIYRLLS 182


>gi|269860253|ref|XP_002649849.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
 gi|220066790|gb|EED44262.1| SWF/SNF family helicase [Enterocytozoon bieneusi H348]
          Length = 878

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 67/205 (32%), Gaps = 32/205 (15%)

Query: 15  LQGENI---EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-- 69
           L+ + I    A +  +     L+ A+  +++      + +   K  AL  II        
Sbjct: 663 LEDKEINYSTAKHHLAILKDILKAASHPMHF---SKTESIISTKTMALFDIINMCGGFEN 719

Query: 70  ---PIIVAYHFNSDLARLQKAFPQGRTLDK---DPCTIQEWNEGKIPLLFAHPASCGHGL 123
               +I+ +     L  +     +     K   +     E N  K  +            
Sbjct: 720 MRNKMIIFFQNKKTLDIVYNELKKNNVNLKVLSNDIKYNEINNNKTDINIIANEFNNSDA 779

Query: 124 NLQY-------------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +                 NI+VF+   W+        +   + R  + G K+ V V  L
Sbjct: 780 TILLSTTLLGGLGLNLTMVNIVVFYEHDWNP-----FNDLQAMDRAHRLGQKQIVNVIRL 834

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I ++TI+E V+     K  I + ++
Sbjct: 835 IVKDTIEEKVMNYQNFKKYISEHII 859


>gi|281337653|gb|EFB13237.1| hypothetical protein PANDA_009544 [Ailuropoda melanoleuca]
          Length = 1008

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCT 100
            K  A++  I+       +    F   L+                          +    
Sbjct: 261 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKARYIRIDGSVPSSERIHL 320

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +    +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 321 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 374

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YL+A  T+D L+   L  K+ +    LN  K++ 
Sbjct: 375 GQCTSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQL 417


>gi|47221566|emb|CAF97831.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1989

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 58/223 (26%), Gaps = 71/223 (31%)

Query: 43   DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR----------LQKAFPQ 90
              E +       K+  L+ ++ K       ++V       L              +    
Sbjct: 997  MYEGNSLVKSSGKLMLLQKMMRKLKEGGHRVLVFSQMTKMLDLLEDFLENEGYKYERIDG 1056

Query: 91   GRTLDKDPCTIQEWNEGKIPL----------------------------------LFAHP 116
            G T +     I  +N     +                                       
Sbjct: 1057 GVTGNMRQEAIDRFNGEFKAVVCLDFKTQLQRSNNVLTFCLLSSSFTAPGAPQFAFLLST 1116

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEE-----------HQQMIER-------------IG 152
             + G G+NL    + ++ +   W+                 + +R               
Sbjct: 1117 RAGGLGINL-ASADTVIIYDSDWNPHNDIQVCSATARICVFVSDRIKEDNAVCFVGALQA 1175

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +R  + G  R V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1176 FSRAHRIGQNRKVMIYRFVTKASVEERITQVAKKKMMLTHLVV 1218


>gi|312219860|emb|CBX99802.1| hypothetical protein [Leptosphaeria maculans]
          Length = 994

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 32/173 (18%)

Query: 52  HDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCT 100
            D K        +        IV   +   L  ++ A  Q +             +    
Sbjct: 800 KDAKWCVNLDCCVWFEADVISIVFSTWRMTLDIIEAALEQAQIRSVRFDGKVAQTQRQPV 859

Query: 101 IQEWN-EGKIPLLFAHPASCGHG--------------LNLQ-YGGNILVFFSLWWDLEEH 144
           + E+     + ++         G              + L     +        W+    
Sbjct: 860 LNEFKSNPNVRIILLTLECGAVGSVGPPASIKNANCIIRLTLTAASRAYLMEPHWNPT-- 917

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              +E   + R  + G KR V       +++ +E V++    K  +  +LL+ 
Sbjct: 918 ---VEEQALARIHRIGQKREVTTIRFYIRDSFEERVIETQEAKKNLASVLLSG 967


>gi|242042115|ref|XP_002468452.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
 gi|241922306|gb|EER95450.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
          Length = 976

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 22/156 (14%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ---------------KAFPQGRTLDKD 97
             K     + + +A    ++V   +   L  L+                      T ++ 
Sbjct: 766 KAKFIHNLLSLSEAAGEKVLVFSQYVRSLHFLETLFTKMKGWKPGVNTFLMDGSSTQEQR 825

Query: 98  PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              I+ +N   K  + F    +CG G++L  G + +V   +  +       + R  + R 
Sbjct: 826 EQAIERFNNSPKAKVFFGSIKACGEGISL-VGASRIVILDVHENPA-----VMRQAIGRA 879

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            + G  + V+ Y L+A  + +E        K  +  
Sbjct: 880 FRPGQSKVVYCYRLVASGSSEEEDHYIAFKKERVSK 915


>gi|148553123|ref|YP_001260705.1| helicase domain-containing protein [Sphingomonas wittichii RW1]
 gi|148498313|gb|ABQ66567.1| helicase domain protein [Sphingomonas wittichii RW1]
          Length = 1167

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    I+ + + K  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 541 HGGVSREERRKVIERFMQDKDLLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKLEQRF 599

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 600 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 643


>gi|322792699|gb|EFZ16567.1| hypothetical protein SINV_11659 [Solenopsis invicta]
          Length = 81

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            ++F+   W+       +++  + R  + G  + V VY LI + TI+E +LQR R KS +
Sbjct: 19  QVIFYDSDWNPT-----VDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEV 73


>gi|322505021|emb|CAM42238.2| putative DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1096

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGTGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  +   + YL+A+ T D ++   L+ K ++   +L 
Sbjct: 580 -----HRIGQAQPCRIKYLLAEGTSDSVIWPLLQAKLSVTTAMLE 619


>gi|303288149|ref|XP_003063363.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226455195|gb|EEH52499.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2005

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 95   DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +    + E+ + K+       L+         G NL    + +    L  + +      
Sbjct: 1899 HQQCAALDEFQKEKLRPGDARVLMLLSRDESASGANLTTANHAIFVHPLETNTQYEYDAS 1958

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            E   + R R+ G  + V V+ LIA++TI+E + 
Sbjct: 1959 ETQAIGRIRRYGQTKLVHVHRLIAKDTIEEKIY 1991


>gi|154338209|ref|XP_001565329.1| DNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1096

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGTGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  +   + YL+A+ T D ++   L+ K ++   +L 
Sbjct: 580 -----HRIGQAQPCRIKYLLAEGTSDSVIWPLLQAKLSVTTAMLE 619


>gi|154246918|ref|YP_001417876.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154161003|gb|ABS68219.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1167

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    ++ + + K  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 541 HGGVSREERRKVVERFMQDKDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 599

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 600 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 643


>gi|67523009|ref|XP_659565.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|40745970|gb|EAA65126.1| hypothetical protein AN1961.2 [Aspergillus nidulans FGSC A4]
 gi|259487320|tpe|CBF85901.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_4G10830)
            [Aspergillus nidulans FGSC A4]
          Length = 1502

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 8    QRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            ++     L G  + +  ++  ++  K   +A  +          + H +      +I   
Sbjct: 833  RKAKQTFLNGIYKELPPYSPLTQ-TKL--IATASAKLTYLLDQVQEHSK--AEKIIIFYD 887

Query: 66   ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
             N +   +A          +      +   ++   I      ++ +L        HGL++
Sbjct: 888  NNNSAYWIAEGLELLGVDFRIYANTLKPTLREEYLILFREFEQVRVLLMDLRQASHGLHI 947

Query: 126  QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                + +   +        Q  IE   + R  + G  R VFV  L+ ++T+++ +LQR  
Sbjct: 948  -AQASRVYIVNP-----IWQPNIESQAIKRAHRIGQTRPVFVETLVLRDTLEDKILQR-- 999

Query: 186  TKS----TIQDLLLNA 197
             K+     IQ+ LL+ 
Sbjct: 1000 RKAMADVEIQNDLLDD 1015


>gi|307106882|gb|EFN55126.1| hypothetical protein CHLNCDRAFT_57917 [Chlorella variabilis]
          Length = 914

 Score = 60.9 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+     +  ++  + +      + G GL+     +++VF  L  ++        R    
Sbjct: 799 DRRQAVRRFHSDSAVRVALLSVTAAGVGLDF-SAASVVVFAELPDEVAHV-----RQAED 852

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           R  + G +  V VY+L A+ T D+   Q L         
Sbjct: 853 RAHRQGQRHPVNVYFLCAKGTADDRRWQALNRSLARASA 891


>gi|297721831|ref|NP_001173279.1| Os03g0165266 [Oryza sativa Japonica Group]
 gi|255674231|dbj|BAH92007.1| Os03g0165266 [Oryza sativa Japonica Group]
          Length = 1078

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 22/156 (14%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR---------------LQKAFPQGRTLDKD 97
              K     + + +A    ++V   +   L                        G T D+ 
Sbjct: 881  KAKFVHNLLSLSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVTGGSTQDQR 940

Query: 98   PCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N      + F    +CG G++L  G + +V   +  +       + R  + R 
Sbjct: 941  EQAVHRFNNSPDARVFFGSIKACGEGISL-VGASRIVILDVHENPS-----VMRQAIGRA 994

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G  + V+ Y L+A ++ +E        K  +  
Sbjct: 995  YRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSK 1030


>gi|193785976|dbj|BAG54763.1| unnamed protein product [Homo sapiens]
          Length = 827

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 69  AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHL 128

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                 +    +      + G GL      + +VF  L+WD         +    R  + 
Sbjct: 129 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRI 182

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 183 GQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 225


>gi|255293151|dbj|BAH90243.1| DEAD/DEAH box helicase-like protein [uncultured bacterium]
          Length = 1170

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    ++ + + K  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 541 HGGVSREERRKVVERFMQDKDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 599

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 600 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 643


>gi|312131273|ref|YP_003998613.1| snf2-related protein [Leadbetterella byssophila DSM 17132]
 gi|311907819|gb|ADQ18260.1| SNF2-related protein [Leadbetterella byssophila DSM 17132]
          Length = 773

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 81/212 (38%), Gaps = 29/212 (13%)

Query: 7   FQRELYCDLQGENIEAFNS----------ASK-TVKCLQLANGAVYYDEEKHWKEVHDEK 55
            QRE++  L  +     +            ++   K   L +G    D+E+       ++
Sbjct: 489 VQREMHAQLAQKVSMIVSKKLKTPYDWQMLTQYLQKMRMLCDGVFLLDQEQDISPKL-KE 547

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN 105
           ++ + +         +++   + + L ++     +             +      + ++N
Sbjct: 548 LEEILLEKLDLKVQKVLIFSEWLAVLDKIAIILQRNEIDFAVLTGNVPVKSRQKLVDQFN 607

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  +      +   GLNLQ   + ++ F L W+  +  Q I RI    Q+ +     
Sbjct: 608 TDQRCRVFLCTETAG-SGLNLQS-ADTVINFELPWNPAKKNQRIGRIDRIGQKNSK---- 661

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + +  LI +++I+  ++Q L+ K  + D +L 
Sbjct: 662 LTIINLIMRDSIETKLIQGLKLKQDLFDSILE 693


>gi|296329092|ref|ZP_06871597.1| SNF2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153811|gb|EFG94624.1| SNF2 family helicase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 628

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + ++    + ++ E +I +L  +P +    ++L    +  +++   ++L    Q  
Sbjct: 493 YGSTSEEERRDILNKFKEKEIDVLITNPHTLAESVSLHSVCHDAIYYEYSYNLVHLLQSK 552

Query: 149 ERIGVTRQRQAGFKRAVFVY-YLIAQN----TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +RI     ++  + +  F++   + ++    ++D+ + QRL  K  I    L A+ K+ +
Sbjct: 553 DRIHRLGLKEGQYTQYYFLHSIFLTRDGFEYSLDQKIYQRLLEKERIM---LEAIDKDIL 609

Query: 204 H 204
            
Sbjct: 610 E 610


>gi|302885904|ref|XP_003041843.1| hypothetical protein NECHADRAFT_53012 [Nectria haematococca mpVI
           77-13-4]
 gi|256722749|gb|EEU36130.1| hypothetical protein NECHADRAFT_53012 [Nectria haematococca mpVI
           77-13-4]
          Length = 687

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 19/120 (15%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKD-----------PCTIQEWNEGK--IPLLFAHPAS 118
           IV   + S L  L++   +     +                    + +  IP+L     +
Sbjct: 571 IVFTAWRSTLDLLERMLTENGIQCRRIDGRVSISDRTERLKDFQFDPENSIPVLLLSIET 630

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL L    + +      W+    Q       + R  + G KR V +   I QNT++E
Sbjct: 631 GAVGLTLTA-ADRVHIVEPQWNPSVEQ-----QAIGRALRIGQKRKVTIVKYIVQNTVEE 684


>gi|148654421|ref|YP_001274626.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566531|gb|ABQ88676.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 1116

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 18/150 (12%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKI 109
           E + +      I++       L  L+               G  L       + +   + 
Sbjct: 482 EQLNQNHPGEKILIFTESRDTLEHLEKNVRLWGYSVCTIHGGMDLASRIQAEKTFKN-EA 540

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            ++ A  A+   G+NLQ+  ++++ + + W+    +Q + RI      + G  R VFV+ 
Sbjct: 541 QIMVATEAAG-EGINLQF-CHLMINYDIPWNPNRLEQRMGRI-----HRYGQTREVFVFN 593

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           L+A +T +  V Q +  K       L + K
Sbjct: 594 LVATDTREGRVWQAVFRKLEEIRQALGSDK 623


>gi|331091942|ref|ZP_08340774.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330402841|gb|EGG82408.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 2591

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  K      +   G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2181 FIHEAGTETKKAELFAKVRSGQVRVLLGSTPKLGAGTNIQDRLIALHHLDCPWKPADLEQ 2240

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2241 QEGRILR----QGNQNKKVKIFRYVTENTFDAYMWQILENKQKFISQIMTS 2287


>gi|322499377|emb|CBZ34450.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1102

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 580 -----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|321399531|emb|CAM68321.2| putative DNA helicase [Leishmania infantum JPCM5]
          Length = 1102

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 580 -----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|146087740|ref|XP_001465890.1| DNA helicase [Leishmania infantum JPCM5]
          Length = 935

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               ++P       E    +      S G G N     + +VF  L W+   H Q  +R+
Sbjct: 521 PPAQREPAAEHFRTEATCTVAILSMQSSGIGHNFT-CASTVVFTELDWNPSTHLQCEDRV 579

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G  +   + YL+A+ T D ++   L+TK ++   +  
Sbjct: 580 -----HRIGQAQPCHIKYLLAEGTSDSVIWPLLQTKLSVTAAMFE 619


>gi|33146888|dbj|BAC79886.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
          Length = 637

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + ++N    GK  +L A   +C  G++L  G + LV     W+  +      R  +
Sbjct: 502 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKT-----RQAI 555

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 556 ARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 597


>gi|322501559|emb|CBZ36638.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 908

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + L      + G GLNL  G + ++     ++        +   V R  + G +  V
Sbjct: 739 QPGVFLFLISTRAGGTGLNLT-GADTVILLDGDFNP-----HNDLQAVDRCHRIGQRNPV 792

Query: 166 FVYYLIAQNTID-ELVLQRLRTKSTIQDLLLN 196
            VY L++ +T++ E     +  K  ++ L+L 
Sbjct: 793 AVYRLVSPHTVEDERHSGIVDRKLKLEHLVLG 824


>gi|291615513|ref|YP_003522621.1| helicase domain protein [Nitrosococcus halophilus Nc4]
 gi|291582575|gb|ADE17031.1| helicase domain protein [Nitrosococcus halophilus Nc4]
          Length = 938

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEWNEG 107
           E ++ K     +++   + +    L++                G++ D+    I  + + 
Sbjct: 523 EQVLTKNPDEKVLIFTEYRATQDYLRETLVARFGADKVEIICGGQSQDERRAAIARFEDK 582

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                     + G G+NLQ   +++  F L W+     Q I R+      + G  + V V
Sbjct: 583 GQ--FLVSTEAGGEGINLQRYCHVVFNFDLPWNPMRLVQRIGRL-----YRYGQDKRVIV 635

Query: 168 YYLIAQNTIDELVLQRL 184
           + + A +T+D  ++  L
Sbjct: 636 FNVHAPDTLDAQIMDTL 652


>gi|163816654|ref|ZP_02208017.1| hypothetical protein COPEUT_02844 [Coprococcus eutactus ATCC 27759]
 gi|158447911|gb|EDP24906.1| hypothetical protein COPEUT_02844 [Coprococcus eutactus ATCC 27759]
          Length = 1101

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +     + +N+GK+ +L       G G N+Q     +      W   +  Q
Sbjct: 764 YIHDAATDAQRKKIEKSFNDGKVRILIGSTMKLGIGANVQERLIAVHHLDQPWRPADMVQ 823

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      VF+Y  + +++ D    Q L  K       L+ 
Sbjct: 824 RQGRILR----QGNLNSEVFIYRYVTESSFDSYTWQILENKQKFIAQFLSG 870


>gi|254450245|ref|ZP_05063682.1| helicase domain protein [Octadecabacter antarcticus 238]
 gi|198264651|gb|EDY88921.1| helicase domain protein [Octadecabacter antarcticus 238]
          Length = 937

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                + +  G + +L     + G GLNLQ+  +I+V F + W+    +Q I R+     
Sbjct: 520 RGRAQRAF-SGNVRILV-STDAGGEGLNLQF-CHIIVNFDMPWNPMRVEQRIGRVD---- 572

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL---------LLNALKKETI 203
            + G    V     + ++T++  V + L  K  +            ++++++ E +
Sbjct: 573 -RIGQPHIVRAINFVLEDTVEHRVREVLEAKLAVIAEEFGVDKVADVMDSVESEPL 627


>gi|227544624|ref|ZP_03974673.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185390|gb|EEI65461.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 73

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L+++ L W LE +QQ   R+      + G ++ V ++++I + TIDE +L  L+ K   Q
Sbjct: 2   LIWYGLTWSLELYQQTNARLW-----RQGQRQPVVIHHIITEGTIDENILAALKRKDKTQ 56

Query: 192 DLLLNALKK 200
             L+NA+K 
Sbjct: 57  LALINAVKA 65


>gi|227515541|ref|ZP_03945590.1| SNF2 family DNA/RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227086154|gb|EEI21466.1| SNF2 family DNA/RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 630

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDP 98
           V   K +    +I+K  +    ++V   F           +D+                 
Sbjct: 445 VESPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNDMGIKTTLVYGATPKQDRE 504

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI       
Sbjct: 505 GMINNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPA 564

Query: 159 AGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             + R    YYL+ +        ID  V ++L+ K  +    ++ 
Sbjct: 565 NQYTR---YYYLMTKGDVAHMGFIDSTVYKKLKDKEKVMIDAIDG 606


>gi|297800006|ref|XP_002867887.1| hypothetical protein ARALYDRAFT_914628 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313723|gb|EFH44146.1| hypothetical protein ARALYDRAFT_914628 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 94

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               + G GLNL    + +     WW+    +Q I RI      + G KR VFV   I +
Sbjct: 1   MSLKAGGVGLNLTATSS-VFLMDPWWNPAVEEQAIMRI-----HRIGQKRTVFVRRFIVK 54

Query: 174 NTIDELVLQRLRTKSTIQDLLL--NALKKETIH 204
           +T++E + Q    K  + D  L    ++ E + 
Sbjct: 55  DTVEERMQQVQARKQRMIDGALTDEEVRSERLE 87


>gi|124513860|ref|XP_001350286.1| DNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23615703|emb|CAD52695.1| DNA helicase, putative [Plasmodium falciparum 3D7]
          Length = 906

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCG 120
           ++   +   +     F  +             ++K    I+   N+  + +      +CG
Sbjct: 664 LLFCHHKLVMDEVETFLKEQKCSYIRVDGLTPMEKREIYIKNFQNDDNVKIALLSITACG 723

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N +VF  L+W   +  Q  +R              V ++YLIAQNTIDE+V
Sbjct: 724 MGLNLTA-ANTVVFGELFWVPGQIIQAEDRAHRIGTAHDV----VNIHYLIAQNTIDEIV 778

Query: 181 LQRLRTKSTIQDLLLNALK 199
            + +  K       LN ++
Sbjct: 779 WKIINRKWNTLTTALNGIE 797


>gi|25148958|ref|NP_498401.2| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|20451185|gb|AAM22028.1|U41534_4 Hypothetical protein C16A3.1b [Caenorhabditis elegans]
          Length = 686

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +       +  +  I +      + G G+ L    +++VF  + ++           
Sbjct: 524 PSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTA-ASVVVFAEIHFNPGYLV-----Q 577

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G K +VFV YLIA+ T D+++   ++ K  +   +
Sbjct: 578 AEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 620


>gi|321258025|ref|XP_003193785.1| hypothetical protein CGB_D7250W [Cryptococcus gattii WM276]
 gi|317460255|gb|ADV21998.1| Hypothetical protein CGB_D7250W [Cryptococcus gattii WM276]
          Length = 1059

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 66/196 (33%), Gaps = 24/196 (12%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANA 68
           A +  +  ++  ++         E    ++              K++ L+++I K  A  
Sbjct: 7   AKSVRNILMELRKVCQHPYLSAPELEAFDLPPEEQHRQLLNASGKLQFLKLLIPKLIARG 66

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 128
             I++    +                     +   ++     ++            LQ+ 
Sbjct: 67  HRILLFSQISCMAIISSICVLTEIPNKHRGKSPWTYSMRLTQIII--------YFFLQHE 118

Query: 129 --GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                L++             I  I + R  + G K+ V V+ L+ + +++E ++ + + 
Sbjct: 119 LEAWGLIWPPQTRSFCTTLISI-LIRINRAYRYGQKKTVLVFKLMVKGSVEETIMNKGKR 177

Query: 187 KSTIQDLLLNALKKET 202
           K  +  L++  + KET
Sbjct: 178 KMVLDHLVVQQMGKET 193


>gi|325495636|gb|EGC93500.1| DarB [Escherichia fergusonii ECD227]
          Length = 2221

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1334 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1393

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1394 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1452

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1453 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1508

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1509 KRKAGWISDILRSDKSEM 1526


>gi|25013144|gb|AAN71685.1| SD19050p [Drosophila melanogaster]
          Length = 1285

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              +       ++ +  I  +     IIV   + + L  + +A        ++ CT ++++
Sbjct: 1116 GDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCTNKDFD 1175

Query: 106  E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +       +  L    +    GLNL      +       +  +     ER  + R  + G
Sbjct: 1176 DFKNPLSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGRIHRFG 1229

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
             KR   V+  I   T++E +L           L T   ++++ L++LKK
Sbjct: 1230 QKRPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1278


>gi|331649967|ref|ZP_08351043.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041224|gb|EGI13378.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 2255

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   +  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQLAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|306833660|ref|ZP_07466787.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
 gi|304424430|gb|EFM27569.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
          Length = 2274

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    R V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHREVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|302421852|ref|XP_003008756.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351902|gb|EEY14330.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 2359

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 7/156 (4%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
           G  +Y        +    +   + ++  +N    + A  F++                 D
Sbjct: 743 GRSFYAPVDSCSAMARSALDDEKALLFVSN--KKLKAQLFDALAEDDNVDVYMTTGTHHD 800

Query: 98  PCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              I+ +      GK  +L     S           N ++F +       +  M  R   
Sbjct: 801 TDAIRYFKEPNENGKTKVLVQSLMSEESAGTNLTEANHVMFAAPLHTDRRNHYMYMRQAR 860

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKS 188
            R  + G  R V VY+ +  +T++  VL+ RLR K 
Sbjct: 861 GRAIRFGQTRPVKVYHFVTAHTMEVDVLEHRLRHKL 896



 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 69   APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLN 124
               + A  F++                 D   I+ +      GK  +L     S      
Sbjct: 2156 NKKLKAQLFDALAEDDNVDVYMTTGTHHDTDAIRYFKEPNENGKTKVLVQSLMSEESAGT 2215

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-R 183
                 N ++F +       +  M  R    R  + G  R V VY+ +  +T++  VL+ R
Sbjct: 2216 NLTEANHVMFAAPLHTDRRNHYMYMRQARGRAIRFGQTRPVKVYHFVTAHTMEVDVLEHR 2275

Query: 184  LRTKS 188
            LR K 
Sbjct: 2276 LRHKL 2280


>gi|194856372|ref|XP_001968736.1| GG25032 [Drosophila erecta]
 gi|190660603|gb|EDV57795.1| GG25032 [Drosophila erecta]
          Length = 754

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +        N+    +      +C  G+ L     I+VF  L W+             +R
Sbjct: 573 RSDFVDTFQNKSSCKVALLSLKACNSGITLTA-AEIIVFAELDWNPSTL-----AQAESR 626

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V   YL+A  T D+ +   L+ K  +   +
Sbjct: 627 AHRIGQTKPVICRYLMAHKTADDTIWNMLKNKQEVLSKV 665


>gi|189241979|ref|XP_967778.2| PREDICTED: similar to TBC1D12: TBC1 domain family, member 12
           [Tribolium castaneum]
          Length = 572

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++F    W+      M++     R  + G  + V VY L+ + TIDE++L R   K 
Sbjct: 449 ADTVIFMDRDWNP-----MVDLQAQDRCHRIGQTKPVMVYSLVTKGTIDEIILNRADVKK 503

Query: 189 TIQDLLL 195
            +  +++
Sbjct: 504 RLGKVVI 510


>gi|169830470|ref|YP_001716452.1| helicase domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637314|gb|ACA58820.1| helicase domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 578

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 +   G NLQ+   IL+ + L W+    +Q I R+      + G  R V +Y L 
Sbjct: 432 FLVSTDTGSEGRNLQF-CRILINYDLPWNPMRIEQRIGRL-----HRLGQTREVLIYNLS 485

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALK 199
           A  T++  +L+ L  K  +  L++  L+
Sbjct: 486 AAETVEAHLLELLDAKINMFQLVIGELE 513


>gi|17552194|ref|NP_498400.1| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|14573807|gb|AAK68177.1|U41534_2 Hypothetical protein C16A3.1a [Caenorhabditis elegans]
          Length = 687

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +       +  +  I +      + G G+ L    +++VF  + ++           
Sbjct: 525 PSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTA-ASVVVFAEIHFNPGYLV-----Q 578

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G K +VFV YLIA+ T D+++   ++ K  +   +
Sbjct: 579 AEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 621


>gi|25148960|ref|NP_741192.1| hypothetical protein C16A3.1 [Caenorhabditis elegans]
 gi|60390949|sp|Q8MNV7|SMAL1_CAEEL RecName: Full=Putative SMARCAL1-like protein
 gi|20451186|gb|AAM22029.1|U41534_5 Hypothetical protein C16A3.1c [Caenorhabditis elegans]
          Length = 690

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +       +  +  I +      + G G+ L    +++VF  + ++           
Sbjct: 528 PSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTA-ASVVVFAEIHFNPGYLV-----Q 581

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              R  + G K +VFV YLIA+ T D+++   ++ K  +   +
Sbjct: 582 AEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQV 624


>gi|323969194|gb|EGB64496.1| hypothetical protein ERHG_04662 [Escherichia coli TA007]
          Length = 2255

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|260871137|ref|YP_003237917.1| defense against restriction protein [Escherichia coli O111:H- str.
            11128]
 gi|257767716|dbj|BAI39209.1| defense against restriction protein [Escherichia coli O111:H- str.
            11128]
          Length = 2255

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|296204912|ref|XP_002749531.1| PREDICTED: zinc finger Ran-binding domain-containing protein 3
           [Callithrix jacchus]
          Length = 1080

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
           +K    ++ + ++   +V  H  S L                     +  +    + ++ 
Sbjct: 326 VKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKIRYIRIDGSVSSSERIHLVNQFQ 385

Query: 106 -EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +      + G GL      + +VF  L+WD         +    R  + G   +
Sbjct: 386 KDPDTRVAILSIQAAGQGLTFTA-ASHVVFAELYWDPGHI-----KQAEDRAHRIGQCSS 439

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           V ++YLIA  T+D L+   L  K+ +    LN  K++ 
Sbjct: 440 VNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKI 477


>gi|33323519|gb|AAQ07489.1|AF503408_13 DarB [Enterobacteria phage P7]
          Length = 2255

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|46401635|ref|YP_006479.1| DarB [Enterobacteria phage P1]
 gi|33338662|gb|AAQ13985.1| DarB [Enterobacteria phage P1]
 gi|33338771|gb|AAQ14093.1| DarB [Enterobacteria phage P1]
          Length = 2255

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|331229057|ref|XP_003327195.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309306185|gb|EFP82776.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 968

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 31/151 (20%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKI 109
            + +  +    IV   F   L  +++                    ++       N   +
Sbjct: 826 KLNQSDHTIKSIVFSQFTVFLDLIERRLQLAGFKLARLQGNMTPEARNRTIQYFMNNNDV 885

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      + G  LNL    + +     WW+     Q ++R                   
Sbjct: 886 QVFLVSLKAGGVALNLTE-ASRVFIMDPWWNPAVELQAMDR------------------- 925

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           LI +N+I+  +++  + K  +    L    +
Sbjct: 926 LIIENSIESRIVELQKKKEAMTGAALGDDDQ 956


>gi|302388025|ref|YP_003823847.1| SNF2-related protein [Clostridium saccharolyticum WM1]
 gi|302198653|gb|ADL06224.1| SNF2-related protein [Clostridium saccharolyticum WM1]
          Length = 2455

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 2073 FIHDADTEAKKKDLFAKVRTGQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQ 2132

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 2133 RNGRIIR----QGNRNKEVQVYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2179


>gi|313885386|ref|ZP_07819136.1| helicase C-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619116|gb|EFR30555.1| helicase C-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 393

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 73/198 (36%), Gaps = 30/198 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   +++   D    +    N +S      + AN               ++K+K    
Sbjct: 208 KEYKVIEKDRVLD----DKAYDNPSSLLHGLREHAN--------------RNDKLKY-LE 248

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA---FPQGRTLDKDPCT--IQEWNEGKIPLLFAHP 116
           ++ +     I++ Y + S+L  +++                     +W++    L     
Sbjct: 249 MLFEGTDNNIVIFYQYTSELEAIKEIAKGKIIFEVNGSKQAIPSKDKWDKVSNSLTLVQY 308

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   G+ LQY  NI+V+++  +  +++        + R  + G KR V V+    + TI
Sbjct: 309 QAGAAGIELQY-ANIVVYYTPTYSYQDY-----AQSLGRTHRNGQKRKVTVFRFNTEKTI 362

Query: 177 DELVLQRLRTKSTIQDLL 194
           ++ V   L  K      L
Sbjct: 363 EQAVWSALEKKKDFDKTL 380


>gi|291530902|emb|CBK96487.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2598

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +  +G + +L    A CG G N+Q     L      W   + +Q
Sbjct: 2242 YIHDYNTDVKKQTLFAKVRKGDVRVLLGSTAKCGAGTNVQDKLIALHHLDCPWRPADLEQ 2301

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V++Y  + ++T D  + Q +  K      ++ +
Sbjct: 2302 REGRIIR----QGNQNDKVYIYRYVTKDTFDAYLYQIIENKQKGISQIMTS 2348


>gi|322493998|emb|CBZ29290.1| helicase-like protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 991

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + L      + G GLNL  G + ++     ++        +   V R  + G +  V VY
Sbjct: 825 VFLFLISTRAGGTGLNLT-GADTVILLDGDFNP-----HNDLQAVDRCHRIGQQNPVAVY 878

Query: 169 YLIAQNTID-ELVLQRLRTKSTIQDLLLNALKK 200
            L++ +T++ E   + +  K  ++ L+L     
Sbjct: 879 RLVSPHTVEDERHSRIVDGKLKLEHLVLGGDAA 911


>gi|53802914|ref|YP_115393.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53756675|gb|AAU90966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 1212

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G   ++     + + N+  + +L A  A+   G+NLQ   N++V + L W+    +
Sbjct: 566 MIHGGVKREERRKVQELFRNDPAVRVLVATDAAG-EGVNLQN-ANLMVNYDLPWNPNRLE 623

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   RI      + G      ++ ++A  T +  V QRL  K  I+   L  
Sbjct: 624 QRFGRI-----HRIGQTEVCHLWNMVASETREGDVFQRLFEKLEIERQALGG 670


>gi|281207937|gb|EFA82116.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1139

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA-------------RLQKAFPQGR 92
               +E+   K+  ++  IE+ +   II+   FN  L              R  +      
Sbjct: 871  HKNQEIQSSKLNYIKKRIEEIDGQ-IIIFSQFNEMLYDIIFMIKSDMPQLRFLQYHTGIS 929

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              ++    +         ++  +     +G+N+      ++      +L +     ER  
Sbjct: 930  KKERADAILTFQTNQDYKVIVMNTDLAAYGINITK-ATHILIVDPIMNLAK-----ERQA 983

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + R  + G  + V+V  L+  +++DE++   +  
Sbjct: 984  IKRAHRIGQTKPVYVEKLVTTDSVDEVITSMVDR 1017


>gi|167998999|ref|XP_001752205.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162696600|gb|EDQ82938.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1520

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D  R  +     +   +    + E   G + +L        +GLNL      ++      
Sbjct: 1349 DRFRGVEETVGKKRSSRKRANVDEVQ-GPVQVLLMPIRHGANGLNL-VEAQHVMLLEPLL 1406

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            +       +E   + R  + G  RA FV+  I  +T++E +    R K
Sbjct: 1407 NPA-----MEAQAINRVHRIGQTRATFVHRFIVHDTVEESIYGLRRQK 1449


>gi|87307450|ref|ZP_01089594.1| Helicase, C-terminal [Blastopirellula marina DSM 3645]
 gi|87289620|gb|EAQ81510.1| Helicase, C-terminal [Blastopirellula marina DSM 3645]
          Length = 1214

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  K     ++  +G + +L    A  G G N+Q     L      W   E +Q   RI 
Sbjct: 789 SDAKKQALFEKVRQGTVRVLLGSTAKMGTGTNVQKRLIALHHLDAPWKPAEVEQRDGRIL 848

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                Q    + V +Y  + + + D  + Q L TK+     ++
Sbjct: 849 R----QGNQNKEVAIYRYVTEGSFDAYMWQALETKARFISQVI 887


>gi|283796708|ref|ZP_06345861.1| protein, SNF2 family [Clostridium sp. M62/1]
 gi|291075592|gb|EFE12956.1| protein, SNF2 family [Clostridium sp. M62/1]
          Length = 2454

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 2072 FIHDADTEAKKKDLFAKVRTGQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQ 2131

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 2132 RNGRIIR----QGNRNKEVQVYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2178


>gi|147865787|emb|CAN81153.1| hypothetical protein VITISV_020819 [Vitis vinifera]
          Length = 845

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +F   L     A  +          I          L     + G GL L    + ++F 
Sbjct: 688 YFLMFLKLTYMAGCKFLIFAHHQPMID----SIFQFLVLSIKAGGVGLTLTA-ASTVIFA 742

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W   +           R  + G   +V ++YL+A +T+D+++   +++K      +L
Sbjct: 743 ELSWTPGDLI-----QAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQML 797

Query: 196 NA 197
           + 
Sbjct: 798 DG 799


>gi|326670855|ref|XP_003199305.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Danio rerio]
          Length = 668

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 46/145 (31%), Gaps = 9/145 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNS--DLARLQKAFPQGRTLDKDPCTIQEWNEGK-I 109
            + ++             +++        + +             +     + +   +  
Sbjct: 483 SDMLECGREKFLVFAHHKLVLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQS 542

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +   GL L     ++VF  L+W+              R  + G    V ++Y
Sbjct: 543 CVAVLSITAANMGLTLHSAA-LVVFAELFWNPGVLI-----QAEDRVHRIGQTSNVDIHY 596

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLL 194
           L+A+ T D+ +   ++ K  + + +
Sbjct: 597 LVAKGTADDYLWPMIQAKMNVLEQV 621


>gi|328848317|gb|EGF97545.1| hypothetical protein MELLADRAFT_85092 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 7/145 (4%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
            Y   +   K+V   K    + +I       +               +     T  +   
Sbjct: 34  AYLVSQLKNKQVPLHKGLCKKTVIYTQWRCFMEWIKIGLDCHGIESGSLHGEMTPQERTL 93

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   I        + G GLN+    + +      W+ +  QQ I+R+      +
Sbjct: 94  QLNRFQNNNNIEAFIVSIEAGGVGLNMT-CADEVYLMDADWNPQIVQQAIDRL-----HR 147

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQR 183
            G    V VY+++A  ++++ +   
Sbjct: 148 IGQTHPVKVYHVVAGGSVEQHLFNV 172


>gi|225374536|ref|ZP_03751757.1| hypothetical protein ROSEINA2194_00151 [Roseburia inulinivorans DSM
            16841]
 gi|257438036|ref|ZP_05613791.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|225213596|gb|EEG95950.1| hypothetical protein ROSEINA2194_00151 [Roseburia inulinivorans DSM
            16841]
 gi|257199696|gb|EEU97980.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2454

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 2072 FIHDADTEAKKKDLFAKVRTGQVRVLLGSTQKMGAGTNVQDRLVAVHHLDVGWRPADMTQ 2131

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 2132 RNGRIIR----QGNRNKEVQVYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2178


>gi|56475568|ref|YP_157157.1| ATP-dependent helicase [Aromatoleum aromaticum EbN1]
 gi|56311611|emb|CAI06256.1| ATP-dependent helicase [Aromatoleum aromaticum EbN1]
          Length = 980

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 89  PQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  +    ++ +   E  I LL         GLNL Y  + LV F L W L   QQ
Sbjct: 484 HGGMTDTEQQSIVERFGRKEDPIRLLLCS-DVASEGLNLHYFCHRLVHFDLPWSLMVFQQ 542

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTI-----DELVLQRLRTKSTIQDL 193
              R+      + G      + YL  +  I     D  +L+ L+ K    + 
Sbjct: 543 RNGRVD-----RYGQTHQPQIIYLFTETRIQRVKGDLRILEILQEKDEQANR 589


>gi|261868298|ref|YP_003256220.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413630|gb|ACX83001.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 655

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +   L R +        +T D     ++ + +     +     +   G+NLQ+  ++++ 
Sbjct: 472 YKDWLKRHEGSDKITGSKTADTRAALVEHFKDRGC--IMIATEAGAEGINLQF-CSLIIN 528

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDL 193
           + L W+ +  +Q I R       + G K  V V   + + N  D+ V + L  K  + + 
Sbjct: 529 YDLPWNPQRVEQRIGRC-----HRYGQKHDVVVVNFVDETNEADQRVYELLEQKFQLFNG 583

Query: 194 LLNA 197
           +L A
Sbjct: 584 VLGA 587


>gi|328697302|ref|XP_001945056.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Acyrthosiphon pisum]
          Length = 656

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 7/173 (4%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           + N        L+  N             + +      + I+   +   I        + 
Sbjct: 430 SLNKMEVRGALLKYFNHTGEAKLPAICDYILNLLKDGKKFIVFAHHQKVINGICDVLENN 489

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                      + ++  C   ++  E    +      +   G+ L     +++F  L+W+
Sbjct: 490 ETYYIRIDGKTSSEERKCVCDQFQSEDMYRVAVLSICAANSGITLTA-AKLVIFAELYWN 548

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                         R  + G    V + YL+A+ T D+ +   +++K ++ + 
Sbjct: 549 PGILT-----QAEDRAHRIGQAETVTIQYLLAKGTADDHIWPLIQSKLSVLNK 596


>gi|312964340|ref|ZP_07778639.1| putative helicase [Escherichia coli 2362-75]
 gi|312290970|gb|EFR18845.1| putative helicase [Escherichia coli 2362-75]
          Length = 1868

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1334 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1393

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1394 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1452

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1453 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAI----VRVHYYCGKGSFDEYRLKTL 1508

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1509 KRKAGWISDILRSDKSEM 1526


>gi|170086666|ref|XP_001874556.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649756|gb|EDR13997.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1926

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 85   QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            +    +G    K        N  +  +L  +              N  +F S      + 
Sbjct: 1819 KYLEIKGTAHQKSKNLELFQNGSEERVLLLNVMDESASGANLTSANHAIFLSPLLAPSQE 1878

Query: 145  QQM-IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 E   + R  + G +R V+V+  +  NTIDE + +  + K+ +
Sbjct: 1879 IYNACETQAIGRLVRYGQERHVYVWRFLTTNTIDEEIYE--QRKAAV 1923


>gi|255291967|dbj|BAH90453.1| helicase-like protein [uncultured bacterium]
 gi|255292161|dbj|BAH89287.1| helicase-like protein [uncultured bacterium]
 gi|255293197|dbj|BAH90288.1| ATP-dependent RNA helicase [uncultured bacterium]
          Length = 767

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    ++ + + K  L+     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 541 HGGVSREERRKVVERFMQDKDMLVLIANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 599

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ L+A +T +  V  RL  K       L  
Sbjct: 600 GRI-----HRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGG 643


>gi|54294007|ref|YP_126422.1| hypothetical protein lpl1068 [Legionella pneumophila str. Lens]
 gi|53753839|emb|CAH15305.1| hypothetical protein lpl1068 [Legionella pneumophila str. Lens]
          Length = 1128

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 35/215 (16%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----VHDEKIKALEVIIEK 65
           ++   ++    +         +    +    Y  ++++  +        ++KA   I++K
Sbjct: 757 QILNQVKNMESKNGVMLKAIHQLRACSLHPDYKRQDEYINDNEYIGGSARLKACFEILDK 816

Query: 66  A--NAAPIIVAYHFNSD---------------LARLQKAFPQGRTLDKDPCTIQEWNE-- 106
                  +++   +N                 L RL  A             + ++ E  
Sbjct: 817 IYAKREKVLIFIEYNEWHRHDFLCQIIKTKYKLDRLPMAINGQINSKTRQHIVDKFQEER 876

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  ++   P + G G+ L    N ++  + WW+     Q  +RI      + G +  V 
Sbjct: 877 GKFDVMLLSPRAGGVGITLTA-ANHIIHLTRWWNPAVEDQANDRI-----YRIGQESDVH 930

Query: 167 VYYLIA-----QNT-IDELVLQRLRTKSTIQDLLL 195
           +YY +A     +N+  D  + Q L  K  +   ++
Sbjct: 931 IYYPLAIHAEYENSCFDYNLHQLLEKKREVSQQVI 965


>gi|320039594|gb|EFW21528.1| SNF2 family helicase [Coccidioides posadasii str. Silveira]
          Length = 1271

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPAS 118
            ++II   N             L    + +            +  +N    + +L      
Sbjct: 941  KIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPKLKAEYLALFNNSECVRVLLMDLRQ 1000

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL+L    + +   +  WD       IE   + R  +    + V+V  L+ ++T+++
Sbjct: 1001 ASHGLHL-ASASRIFIINPIWDP-----NIESQAIKRAHRISQMKPVYVETLVLKDTLED 1054

Query: 179  LVLQRLRT----------KSTIQDLLLNALKKE 201
             +L+R +           K  + D  ++++ KE
Sbjct: 1055 KMLRRRKQMTNIEMQHAEKDLLDDRTMSSIIKE 1087


>gi|303311435|ref|XP_003065729.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240105391|gb|EER23584.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1271

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPAS 118
            ++II   N             L    + +            +  +N    + +L      
Sbjct: 941  KIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPKLKAEYLALFNNSECVRVLLMDLRQ 1000

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL+L    + +   +  WD       IE   + R  +    + V+V  L+ ++T+++
Sbjct: 1001 ASHGLHL-ASASRIFIINPIWDP-----NIESQAIKRAHRISQMKPVYVETLVLKDTLED 1054

Query: 179  LVLQRLRT----------KSTIQDLLLNALKKE 201
             +L+R +           K  + D  ++++ KE
Sbjct: 1055 KMLRRRKQMTNIEMQHAEKDLLDDRTMSSIIKE 1087


>gi|13365849|dbj|BAB39310.1| hypothetical protein [Macaca fascicularis]
          Length = 675

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL 81
           ++A    +  Q     +    E    +    K++AL ++++K  +    +++       L
Sbjct: 11  HAAPYFQQLRQTTAPRLLQFPELRLVQFDSGKLEALAILLQKLKSEGRRVLILSQMILML 70

Query: 82  ARLQKAFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
             L+                 + ++    ++ +N + +I        S   G+NL    +
Sbjct: 71  DILEMFLNFHYLTYVRIDENASSEQRQELMRSFNRDRRIFCAILSTHSRTTGINL-VEAD 129

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +VF+    +      +++        + G  + + +Y L++ N+I+E +L+
Sbjct: 130 TVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLK 176


>gi|326929550|ref|XP_003210925.1| PREDICTED: e1A-binding protein p400-like [Meleagris gallopavo]
          Length = 2997

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK 86
              +  ++    +    +    +    K++AL V+++K  +    +++       L  L+ 
Sbjct: 1757 LHQLQRITTPQLLQFPDLRLVQYDSGKLEALAVLLQKLKSEGRRVLILSQMILMLDILEL 1816

Query: 87   AFPQGR----------TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                              ++    ++ +N + +I        S   G+NL    + +VF+
Sbjct: 1817 FLNFHFLTFVRIDEYANHEQRQELMKSFNRDKRIFCAILSSHSRSTGVNL-VEADTVVFY 1875

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                +      +++        + G  + + +Y L++ N+++E +L+
Sbjct: 1876 DNDLNP-----VMDAKAQEWCDRIGRCKDIHIYRLVSGNSVEEKLLK 1917


>gi|269928744|ref|YP_003321065.1| helicase domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269788101|gb|ACZ40243.1| helicase domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 1266

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 12/193 (6%)

Query: 9   RELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
           RE    ++    +I   +S SK  + + +        E       + + +  L   + + 
Sbjct: 714 REEIRYVEDFLHDIRRLSSDSKRERLMTMLGEIFRERETVVIFTQYTDTMDDLREALREV 773

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
               +             +    +     K+          +I +L     +   GLNLQ
Sbjct: 774 YGNQVACYSG----RGGEEWRDGEWVPTTKEEIKNAFREGERIKILLCT-EAASEGLNLQ 828

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             G +L+ + + W+    +Q I R+    Q        V+V      +TI+  V +RL  
Sbjct: 829 TCG-VLINYDMPWNPMRVEQRIGRVDRIGQ----QYPVVWVRNFFYADTIEARVYERLSD 883

Query: 187 KSTIQDLLLNALK 199
           +      ++  L+
Sbjct: 884 RIDWFTEVVGDLQ 896


>gi|119194229|ref|XP_001247718.1| hypothetical protein CIMG_01489 [Coccidioides immitis RS]
          Length = 1271

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPAS 118
            ++II   N             L    + +            +  +N    + +L      
Sbjct: 941  KIIIFYENNNNAFWVAEGLEMLGVEFRIYASTLKPKLKAEYLALFNNSECVRVLLMDVRQ 1000

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL+L    + +   +  WD       IE   + R  +    + V+V  L+ + T+++
Sbjct: 1001 ASHGLHL-ASASRIFIINPIWDP-----NIESQAIKRAHRISQMKPVYVETLVLKGTLED 1054

Query: 179  LVLQRLRTKSTIQDLLLNALK 199
             +L+R   K      +L+A K
Sbjct: 1055 KMLRR--RKQMTNIEMLHAEK 1073


>gi|257484419|ref|ZP_05638460.1| helicase/SNF2 domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 600

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 458 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 517

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 518 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 577

Query: 112 LFAHPASCGHGLNLQYGGNILVF 134
                 + G GLNL     ++ +
Sbjct: 578 FLISLKAGGTGLNLTAADTVIHY 600


>gi|296811676|ref|XP_002846176.1| helicase swr1 [Arthroderma otae CBS 113480]
 gi|238843564|gb|EEQ33226.1| helicase swr1 [Arthroderma otae CBS 113480]
          Length = 1652

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 35/162 (21%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++          ++      
Sbjct: 1339 RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRTLQAGGHRALIFTQMTK 1382

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N + +I        S G G+NL  G
Sbjct: 1383 MLDILEQFLNIHGHRYLRLDGSTKIEQRQLLTERFNSDTRILAFILSSRSGGLGINLT-G 1441

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
             + ++F+ L W+       +++    R  + G  R V +Y L
Sbjct: 1442 ADTVIFYDLDWNPA-----MDKQCQDRCHRIGQTRDVHIYRL 1478


>gi|58616182|ref|YP_195311.1| DNA helicase [Azoarcus sp. EbN1]
 gi|56315643|emb|CAI10287.1| DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 671

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 11/193 (5%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           + Y +        F     T + LQ A       E   + +    K + + V +     A
Sbjct: 468 QAYQEALNSGTSTFGVLHSTRRFLQEAC----IKEAGKYLKKEVAKDEKMVVFVNYTEDA 523

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYG 128
                Y       R         +  K    +     +  +  +         G++L   
Sbjct: 524 YAHAEYLTGLGKGRFVVLTGDILSDAKRQELLDCVQRDDSVKGIVGSYGVLAEGVDLWR- 582

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N +   S  W     +         R  + G  R V V   I   TIDE + + +  K+
Sbjct: 583 ANHVYIASQPWTPATLE-----QAEDRCNRLGQTRLVRVEIPIFAGTIDEAIRELISGKA 637

Query: 189 TIQDLLLNALKKE 201
            I + +L+  + E
Sbjct: 638 EIVEDVLDPEEAE 650


>gi|297571358|ref|YP_003697132.1| SNF2-related protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931705|gb|ADH92513.1| SNF2-related protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 948

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ +     L     +   G+NLQ+  ++LV + L W+ +  +Q I R+   
Sbjct: 484 DRRKALVDEFRDRGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRIEQRIGRV--- 537

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  + +E +L+ L  K  +   +  A
Sbjct: 538 --HRFGQKHNVIVVNFSNKGNLAEERILELLTEKFQLFTSVFGA 579


>gi|73984292|ref|XP_533335.2| PREDICTED: similar to zinc finger, RAN-binding domain containing 3
           [Canis familiaris]
          Length = 1075

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 20/163 (12%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCT 100
            K  A++  I+       +    F   L+                          +    
Sbjct: 322 AKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIESKTRYIRIDGSVPSSERIHL 381

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           + ++  +    +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 382 VNQFQKDPDTRVAILSIQAAGQGLTFTA-ATYVVFAELYWDPGHI-----KQAEDRAHRI 435

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G   +V ++YL+A  T+D L+   L  K+ +    LN  K++ 
Sbjct: 436 GQCSSVNIHYLVANGTLDTLMWGMLNRKTQVTGSTLNGRKEQL 478


>gi|324111110|gb|EGC05096.1| hypothetical protein ERIG_04245 [Escherichia fergusonii B253]
          Length = 2255

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1368 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELS 1427

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1428 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1486

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1487 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1542

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1543 KRKAGWISDILRSDKSEM 1560


>gi|300361150|ref|ZP_07057327.1| SNF2 family helicase [Lactobacillus gasseri JV-V03]
 gi|300353769|gb|EFJ69640.1| SNF2 family helicase [Lactobacillus gasseri JV-V03]
          Length = 630

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 21/173 (12%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQ 90
            ++   + +   K      +IEK  A    ++V   F   + ++                
Sbjct: 437 YKKYDLQHMESPKFILGINLIEKLVAQGKKVLVWGMFVGTMQKIADTLNEKGINTTLIYG 496

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               D     I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +R
Sbjct: 497 ATPKDDREKMIDNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDR 556

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
           I           +    YYL+ +        ID  V ++L+ K  +    ++ 
Sbjct: 557 INRLG---LPQNQYTRYYYLMTKGDIAHMGFIDSTVYRKLKDKEKVMLDAIDG 606


>gi|238485918|ref|XP_002374197.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220699076|gb|EED55415.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 806

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
           ++II   N             L    + +            ++ + E   + +L      
Sbjct: 548 KIIIFYDNNNSAFWIAEGLELLGVDFRIYASTLKPKVRAAYLELFREQEDVRVLLMDLHQ 607

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGL++    + +   +        Q  +E   + R  + G  R VFV  L+ + T+++
Sbjct: 608 ASHGLHI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQTRPVFVETLVLKGTLED 661

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIH 204
            +L+R   +  + +  +   +++ + 
Sbjct: 662 KMLER---RKAMSEKEMQQAERDLLD 684


>gi|188582343|ref|YP_001925788.1| helicase domain protein [Methylobacterium populi BJ001]
 gi|179345841|gb|ACB81253.1| helicase domain protein [Methylobacterium populi BJ001]
          Length = 922

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K     +   +    +L    A+   G+NLQ+   IL  F L W+  + +Q I R
Sbjct: 551 GDHGAKVAAERRFRQKDGPRVLVCT-AAGREGINLQF-ARILFNFDLPWNPMDMEQRIGR 608

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G      VY L+  +TI+  +   L  K T     +  + ++ 
Sbjct: 609 I-----HRYGQSHTAQVYNLVLSDTIEGRIFLLLDEKLTEIARTVGKVDEQG 655


>gi|317153368|ref|YP_004121416.1| helicase domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943619|gb|ADU62670.1| helicase domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 966

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    +EL  +L   ++ A      +  +           A    E+       +  I
Sbjct: 437 ELYDMDGQELLDELLKSHVSALQSEGSHVETLL--------DAAVRCEQAGPDAKAEALI 488

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + +  +  + N     +++   F      L++                 +++       +
Sbjct: 489 EWIYKLQAEENEPDMKVLIFTEFVPTQQMLKEFLEARGISVVTLNGSMAMEERGAAQDAF 548

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L     + G GLNLQ+  ++++ + + W+    +Q I R+      + G  + 
Sbjct: 549 RKSH-RVLV-STDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD-----RIGQPKT 600

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V     + +++++  V + L  K ++ 
Sbjct: 601 VQAINFVFEDSVEFRVREVLEQKLSVI 627


>gi|118396328|ref|XP_001030505.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89284810|gb|EAR82842.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 908

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 78/201 (38%), Gaps = 12/201 (5%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + + + Q++   +   E     +S    +      +G     E K++  + D     +++
Sbjct: 171 QLFEQAQKQN--ESSNEEQNGSSSMFSALSLCYQLSGQAKLHELKNY--IKDLLENDIKI 226

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGR--TLDKDPCTIQEWNEGKIPLLFAHPASC 119
           I+   +   +    +F  +  +L+     G+    ++     Q   + ++ +      + 
Sbjct: 227 IVFAHHNEMLNQLENFVQNELQLKFIRIDGKVAPKERHERVQQFQTDPQVKVAILSLLAA 286

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             GL L    NI+ F  + W     Q         R  + G + +V  +Y++ + T+D+L
Sbjct: 287 STGLTLTASSNIV-FAEMNWTPAIMQ-----QAEDRAHRIGQENSVLCHYILGEKTLDDL 340

Query: 180 VLQRLRTKSTIQDLLLNALKK 200
           + +++  K  I   +L+   K
Sbjct: 341 LYKKIEQKIAIVSNILDGESK 361


>gi|317144593|ref|XP_001820221.2| SNF2 family helicase [Aspergillus oryzae RIB40]
          Length = 1183

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
            ++II   N             L    + +            ++ + E   + +L      
Sbjct: 925  KIIIFYDNNNSAFWIAEGLELLGVDFRIYASTLKPKVRAAYLELFREQEDVRVLLMDLHQ 984

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +        Q  +E   + R  + G  R VFV  L+ + T+++
Sbjct: 985  ASHGLHI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQTRPVFVETLVLKGTLED 1038

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  + +  +   +++ + 
Sbjct: 1039 KMLER---RKAMSEKEMQQAERDLLD 1061


>gi|290984663|ref|XP_002675046.1| helicase [Naegleria gruberi]
 gi|284088640|gb|EFC42302.1| helicase [Naegleria gruberi]
          Length = 960

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 98  PCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +N     PLL         G++L     I+++   W          +   V R 
Sbjct: 743 QSVVDSFNSSNDAPLLLISTKVGSLGIDLSTSQKIVLYDVCWDS------SWDNQAVFRS 796

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G  + V +Y  +  NTI+  + ++L TK++     L+  KK+ ++
Sbjct: 797 FRYGQTKPVSIYRFVMYNTIESKIFEKLCTKTSPFKN-LSEDKKDFLN 843


>gi|328875547|gb|EGG23911.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1107

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 10/152 (6%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
           K   EV D K       ++  +    ++     S      +         +         
Sbjct: 663 KDKLEVFDGKFIIFAHHLDVLDGISNVL----KSRNCEYIRIDGNTNVQTRADYVNLFQT 718

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  I        +   GL L    N+++F  L+W               R  + G   +V
Sbjct: 719 DDTIRAAVLSLTAASTGLTLTA-ANLVIFAELYWTPGTLF-----QAEDRAHRYGQTSSV 772

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + YL+   ++DE +   +  K  +   +L+ 
Sbjct: 773 LIQYLVGIGSVDESIWNMIEEKKDVLGRVLDG 804


>gi|47213496|emb|CAF91072.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2422

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 33   LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
              L+    ++ + +  + +   K++AL +++ K  ++   +++       L  L+     
Sbjct: 1338 HLLSRHFFHFPDLQQMQ-MDSGKLEALAILLRKLKSDGRRVLIFTQMVKMLDILEAFLDH 1396

Query: 91   ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                        T ++   ++Q++N  +          C       +  + ++F+    +
Sbjct: 1397 RKLSYVRVDESFTPEERQESMQKFNRDRKVFCSMLTNRCCSTFGTVFDADTIIFYDTDLN 1456

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 +  E        + G  + + +Y L + N+I+E +L+
Sbjct: 1457 PSMDVRTQE-----WCDKIGRSKDIHIYRLESGNSIEEKLLK 1493


>gi|221506326|gb|EEE31961.1| helicase, putative [Toxoplasma gondii VEG]
          Length = 2744

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 57   KALEVIIEKANAAPIIVAYHF--NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +  ++I+  +    + +   F     +             ++         + +  +L  
Sbjct: 2531 RCPKIIVASSLWENLFLLGCFLEKHSVKCCHFYEKMQDKTNRVEALKSFQQDTETMVLLL 2590

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM---IER------IGVTRQRQAGFKRAV 165
                  HGL+L    + ++      D    QQ+   + R        ++R  + G  R V
Sbjct: 2591 STQLGAHGLDL-SCASHVLLPDPPTDPNVEQQVSRDVYRLLFLHLQVISRAHRMGALRDV 2649

Query: 166  FVYYLIAQNTIDELVLQR 183
             V   I ++T++E +LQR
Sbjct: 2650 HVEIFILKDTVEETILQR 2667


>gi|221485471|gb|EEE23752.1| helicase, putative [Toxoplasma gondii GT1]
          Length = 2763

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 57   KALEVIIEKANAAPIIVAYHF--NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +  ++I+  +    + +   F     +             ++         + +  +L  
Sbjct: 2550 RCPKIIVASSLWENLFLLGCFLEKHSVKCCHFYEKMQDKTNRVEALKSFQQDTETMVLLL 2609

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM---IER------IGVTRQRQAGFKRAV 165
                  HGL+L    + ++      D    QQ+   + R        ++R  + G  R V
Sbjct: 2610 STQLGAHGLDL-SCASHVLLPDPPTDPNVEQQVSRDVYRLLFLHLQVISRAHRMGALRDV 2668

Query: 166  FVYYLIAQNTIDELVLQR 183
             V   I ++T++E +LQR
Sbjct: 2669 HVEIFILKDTVEETILQR 2686


>gi|237835405|ref|XP_002367000.1| helicase conserved C-terminal domain-containing protein [Toxoplasma
            gondii ME49]
 gi|211964664|gb|EEA99859.1| helicase conserved C-terminal domain-containing protein [Toxoplasma
            gondii ME49]
          Length = 2744

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 57   KALEVIIEKANAAPIIVAYHF--NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +  ++I+  +    + +   F     +             ++         + +  +L  
Sbjct: 2531 RCPKIIVASSLWENLFLLGCFLEKHSVKCCHFYEKMQDKTNRVEALKSFQQDTETMVLLL 2590

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM---IER------IGVTRQRQAGFKRAV 165
                  HGL+L    + ++      D    QQ+   + R        ++R  + G  R V
Sbjct: 2591 STQLGAHGLDL-SCASHVLLPDPPTDPNVEQQVSRDVYRLLFLHLQVISRAHRMGALRDV 2649

Query: 166  FVYYLIAQNTIDELVLQR 183
             V   I ++T++E +LQR
Sbjct: 2650 HVEIFILKDTVEETILQR 2667


>gi|115374698|ref|ZP_01461975.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115368269|gb|EAU67227.1| helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 937

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    ++++       +     +   GLNLQ+  N++V + L W+ +  +Q I R  
Sbjct: 506 TPEERRALVEDFRHRMQ--ILICTEAGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC- 561

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G +R V V   + + N  D  + + L  K  + D +  A
Sbjct: 562 ----HRYGQQRDVLVINFLNRQNAADARLFELLEKKLNLFDGVFGA 603


>gi|293379341|ref|ZP_06625486.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
 gi|292642033|gb|EFF60198.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
          Length = 483

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 25/171 (14%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
             K KA   +I+K  +     IV   F            +L     +     ++D+    
Sbjct: 303 SSKTKATIELIKKLVSENKKTIVWCIFISSIELLENKCEELGLSAISIYGETSMDERLKL 362

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+E+ +G+  +L  +P +    ++L    +  +++   ++L    Q  +RI         
Sbjct: 363 IKEFQKGQYDILITNPHTLAESVSLHQVCHDAIYYEYSFNLVHLLQSKDRIHRLG---LA 419

Query: 161 FKRAVFVYYLIAQN-------TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +    YY+ ++        ++D+ +  RL  K  I    L+A+  + + 
Sbjct: 420 DNQYTQYYYMQSKYIYNEQVYSLDDRIYHRLMEKEKIM---LDAIDHDILE 467


>gi|118390229|ref|XP_001028105.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila]
 gi|89309875|gb|EAS07863.1| SNF2 family N-terminal domain containing protein [Tetrahymena
            thermophila SB210]
          Length = 1895

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 61/235 (25%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------------DEEKHWKEVHD 53
            + + + D    +    +        +Q+ N    Y               +++  +    
Sbjct: 1610 KTKGFEDADQGSKIQESVLRMLSHMIQIVNHPCQYKKQERLKGNAGGLEMQKELSQYSAS 1669

Query: 54   EKIKALEVIIEK------------------ANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             K  AL+ ++                     N   +++   F   L  +           
Sbjct: 1670 GKFVALKQLLVDLGFEEKESIEAEEQKVLTTNKNKVLIFSRFKETLQLICDQLLNTEFSH 1729

Query: 96   -------------KDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                         K    I ++N + +  ++    +  G GLNL    N+++ F   ++ 
Sbjct: 1730 IKYLKLDGNVQVSKRYAIINKFNEDSECKIMLLTTSVGGLGLNLTS-ANVVIMFDHNYNP 1788

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                Q I+R                   +I ++T++E ++   R K  I + ++N
Sbjct: 1789 MNDLQAIDRAHRIG--------------MITKDTLEERIMGIQRFKINIANAIIN 1829


>gi|82596817|ref|XP_726418.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481821|gb|EAA17983.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 875

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++   +   +     F  +             +DK    I+ +  + KI +      +CG
Sbjct: 596 LLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYIKNFQSDEKIRIALLSITACG 655

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N +VF  L+W   +  Q  +R              V ++YL+AQNTIDE+V
Sbjct: 656 VGLNLTA-ANTVVFGELYWVPGQMIQAEDRAHRIGTTHD----TVNIHYLVAQNTIDEVV 710

Query: 181 LQRLRTKSTIQDLLLNALK 199
            + +  K       LN  +
Sbjct: 711 WKIINRKWNTLTTALNGTE 729


>gi|257879433|ref|ZP_05659086.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|323142564|ref|ZP_08077380.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
 gi|257813661|gb|EEV42419.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|322412997|gb|EFY03900.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
          Length = 2776

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 2395 FIHDADTEAKKKDLFAKVRTGQVRVLLGSTQKMGAGTNVQDKLVAVHHLDVGWRPSDMTQ 2454

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 2455 RNGRIIR----QGNRNKEVQVYQYVTEGTFDAYLYQTLENKQKFISQIMTS 2501


>gi|310822711|ref|YP_003955069.1| Helicase/SNF2 domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395783|gb|ADO73242.1| Helicase/SNF2 domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 926

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    ++++       +     +   GLNLQ+  N++V + L W+ +  +Q I R  
Sbjct: 495 TPEERRALVEDFRHRMQ--ILICTEAGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC- 550

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G +R V V   + + N  D  + + L  K  + D +  A
Sbjct: 551 ----HRYGQQRDVLVINFLNRQNAADARLFELLEKKLNLFDGVFGA 592


>gi|256763533|ref|ZP_05504113.1| predicted protein [Enterococcus faecalis T3]
 gi|307274366|ref|ZP_07555554.1| protein, SNF2 family [Enterococcus faecalis TX0855]
 gi|307287486|ref|ZP_07567534.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|256684784|gb|EEU24479.1| predicted protein [Enterococcus faecalis T3]
 gi|306501494|gb|EFM70795.1| protein, SNF2 family [Enterococcus faecalis TX0109]
 gi|306508959|gb|EFM78041.1| protein, SNF2 family [Enterococcus faecalis TX0855]
          Length = 620

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 48  WKEVHDEKIKALEVIIEKANA--APIIVAYHFNSDLARLQKAFPQG----------RTLD 95
            K     K+     +I+K +     +IV   F S +  L+K   +             LD
Sbjct: 435 NKIDSTSKMNTTMQLIQKLSGEHKKVIVWCIFISSIQLLEKKCQESGLKVVTIYGETPLD 494

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K    I+E+ +G   +L  +P +    ++L +  +  +++   ++L    Q  +RI    
Sbjct: 495 KRLQLIEEYQQGYYDVLITNPHTLAESVSLHHFCHDAIYYEYSYNLVHLLQSKDRIHRLG 554

Query: 156 QRQAGFKRAVFVYYL----IAQN---TIDELVLQRLRTKSTIQDLLLN 196
            +   + +    YY+    I  +   ++D  + +RL+ K  +    +N
Sbjct: 555 LKDGQYTQ---YYYMESQYIYNDKIFSLDNRIYERLKEKEEVMLNAIN 599


>gi|99035905|ref|ZP_01314954.1| hypothetical protein Wendoof_01000200 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 845

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 17/152 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K        ++                   Q+ N    + ++K        K++ LE
Sbjct: 695 LYQKVVDTTMEKIEKSEGIERKGLIFKLINALKQICNHPSQFGKKKRASIEQSGKMQMLE 754

Query: 61  VIIEKANA--APIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPCTIQEWNE- 106
            I+          ++   +                        G +       I ++   
Sbjct: 755 EILISIGEVAEKSLIFTQYTEMGEIIARLLEERFESEVPFLHGGLSRKARDTMINDFQNL 814

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +  +L     + G GLNL    N ++ + LW
Sbjct: 815 FQSNILIVSLKAGGTGLNLTA-ANHVIHYDLW 845


>gi|294783586|ref|ZP_06748910.1| type III restriction enzyme, res subunit superfamily [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480464|gb|EFG28241.1| type III restriction enzyme, res subunit superfamily [Fusobacterium
           sp. 1_1_41FAA]
          Length = 400

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI--- 109
            +K++ L+        A I++ Y+FN +   ++K       +      I ++++      
Sbjct: 250 KDKLEYLKEF-RANTDANILIFYNFNREAKEIKKIMKVDYEVSGAVSNIPKFDDYDTLKG 308

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                   + G G+ LQY    ++FFS  W  +++        + R  + G K  V VY 
Sbjct: 309 KTTLVQIQAGGAGIELQYN-TEVIFFSPTWSYQDYS-----QALGRAYRIGQKNKVTVYK 362

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLL 195
            I   TI+E V  RL  K    + LL
Sbjct: 363 YIGNRTIEECVYARLDEKKDFAEKLL 388


>gi|66812496|ref|XP_640427.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
 gi|60468391|gb|EAL66396.1| DEAD-box RNA helicase [Dictyostelium discoideum AX4]
          Length = 1540

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 26/155 (16%)

Query: 67   NAAPIIVAYHFNSDLARLQ--------------KAFPQGRTLDKDPCTIQEWN------E 106
            N    IV  H+   L  ++                      + K    I  +        
Sbjct: 1332 NQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFCRIDGKLPISKREAIIDSFQAKSNNGN 1391

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G   L+       G GLNL    NI+      W        IE   + R  + G  R +F
Sbjct: 1392 GGPRLMLMSITCGGIGLNL-ERANIVYLMEPSWTPS-----IEEQAIGRVDRIGQTRDIF 1445

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            V   I + TI+  +L+    K    +  L   + E
Sbjct: 1446 VKRFIIKKTIEVGMLKLHDAKKNNSNAFLTDDEIE 1480


>gi|296446699|ref|ZP_06888639.1| helicase domain protein [Methylosinus trichosporium OB3b]
 gi|296255820|gb|EFH02907.1| helicase domain protein [Methylosinus trichosporium OB3b]
          Length = 1048

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 74/202 (36%), Gaps = 18/202 (8%)

Query: 6   KFQRELYCDLQGENIEAF-NSASKT---VKCLQLANGAVYYDEEKHWKEV----HDEKIK 57
           + +R +    + + I+A   + ++     K  QL +     +   + + +    + + + 
Sbjct: 720 EAERRVLAAEEVDTIDAIVGAIARLPTDTKARQLVDEIRDLEAAGYRQVIVFTQYTDTMD 779

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
            L   +  A    ++             +A   G            + +G   +L     
Sbjct: 780 YLRDHLFDATGKVVMCFSG----RGGEIRAHDGGWKQISREEVKARFKKGAADVLVCT-D 834

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLN Q+ G ++  + + W+    +Q I RI    Q        + +  L  ++T++
Sbjct: 835 AAAEGLNFQFCGALIN-YDMPWNPMRVEQRIGRIDRLGQS----FADIRITNLHYRDTVE 889

Query: 178 ELVLQRLRTKSTIQDLLLNALK 199
             V Q L+ + ++   ++  L+
Sbjct: 890 ADVYQALQQRISVFTNVVGGLQ 911


>gi|22537429|ref|NP_688280.1| SNF2 family protein [Streptococcus agalactiae 2603V/R]
 gi|22534305|gb|AAN00153.1|AE014250_16 SNF2 family protein [Streptococcus agalactiae 2603V/R]
          Length = 2274

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     + +  + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHYLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|322699210|gb|EFY90974.1| SNF2 family helicase [Metarhizium acridum CQMa 102]
          Length = 1144

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQKAFP 89
              Q     V     K    +        +   II   N             L      + 
Sbjct: 859  LRQ--THLVSTVSSKLSYLIDSIVRHQDDDKIIIFYENENVAWYLASVLDMLQIQHLIYA 916

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  T ++    +  ++      +L    +    GL++    + + F +   + +     +
Sbjct: 917  KTLTTERKAQYVNTFHHNPVFRVLLMDLSQAAFGLDM-REASRVYFINPVLNPQ-----V 970

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            E   + R R+   ++ VFV  L+ +++IDE++L+R
Sbjct: 971  EAQAIGRVRRISQQKPVFVETLVLKDSIDEVILER 1005


>gi|238597268|ref|XP_002394280.1| hypothetical protein MPER_05857 [Moniliophthora perniciosa FA553]
 gi|215463060|gb|EEB95210.1| hypothetical protein MPER_05857 [Moniliophthora perniciosa FA553]
          Length = 235

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + ++ F   W+        +   + R  + G K  V VY  ++++T++E VL+R + 
Sbjct: 24  KPADTVIIFDSDWNP-----HNDLQAMARAHRIGQKSHVSVYRFVSKDTMEEDVLERAKK 78

Query: 187 KSTIQDLLLNALKKETIHV 205
           K  ++  ++N +     H+
Sbjct: 79  KMVLEYAIINQMDTSQAHL 97


>gi|329734512|gb|EGG70824.1| helicase C-terminal domain protein [Staphylococcus epidermidis
           VCU028]
          Length = 624

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 28/183 (15%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA--- 87
            Q+ N           K V   K +    +IE   +    ++V   F   + ++ K    
Sbjct: 431 QQIYNSF-------DLKNVTSPKFEKGIELIENLVSQGKKVLVWGLFVGTMNKINKRLLE 483

Query: 88  -------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                         +     I  +  G   +L ++P + G  ++L    +  ++F   ++
Sbjct: 484 SDINSILIYGETPKEDRVDMINNFRNGNAQVLISNPNTLGESISLHQTVHDAIYFEYNFN 543

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLL 194
           L    Q  +RI         + R    YYL++      +  ID+ V  RL+ K  +    
Sbjct: 544 LTFMLQSRDRIHRLGLNNNQYTR---YYYLMSEGDRAHKGFIDKAVYNRLKEKEDVMLNA 600

Query: 195 LNA 197
           ++ 
Sbjct: 601 IDG 603


>gi|255087256|ref|XP_002505551.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226520821|gb|ACO66809.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 700

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 68  AAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHP 116
               +   H    L                        +    +Q++     I +     
Sbjct: 473 GDKFLFFAHHKELLDAASTVLRKRKTQFIRIDGTTPTTERGGLVQQFQTVDAIKVAVLSI 532

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GL L    + +VF  L W   +           R  + G   +V V +L A+N++
Sbjct: 533 KAAGMGLTLTA-ASTVVFGELSWTPGDIV-----QAEDRAHRIGQASSVLVQFLHAKNSV 586

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETIHV 205
           D+++   ++ K      +L+    + + +
Sbjct: 587 DDVMWGSVQNKLENLGQVLDGHMGDHLEI 615


>gi|171742817|ref|ZP_02918624.1| hypothetical protein BIFDEN_01932 [Bifidobacterium dentium ATCC
           27678]
 gi|283456138|ref|YP_003360702.1| ATP-dependent DNA helicase recQ [Bifidobacterium dentium Bd1]
 gi|171278431|gb|EDT46092.1| hypothetical protein BIFDEN_01932 [Bifidobacterium dentium ATCC
           27678]
 gi|283102772|gb|ADB09878.1| ATP-dependent DNA helicase recQ [Bifidobacterium dentium Bd1]
          Length = 1185

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    +     + + N     +L A  A+   GLNLQ   +++V + L W+    +Q 
Sbjct: 560 HGGMDRAERKRVQERFVNNPATRILVATDAAG-EGLNLQR-ADLMVNYDLPWNPNRIEQR 617

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             RI      + G KR  +++ L+A++T +  V  +L TK    D 
Sbjct: 618 FGRI-----HRIGQKRVCWLWNLVAKDTREGEVYGKLLTKIETMDK 658


>gi|163731714|ref|ZP_02139161.1| hypothetical protein RLO149_20459 [Roseobacter litoralis Och 149]
 gi|161395168|gb|EDQ19490.1| hypothetical protein RLO149_20459 [Roseobacter litoralis Och 149]
          Length = 915

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 32/220 (14%)

Query: 3   QY-HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALE 60
            Y  +              +            +++      + E     V    +  A+ 
Sbjct: 584 MYPRQMPPAQAIRYDEARAKHGGILQVLQHIRRVSAHPGMIEGELINDFVGASARTSAVM 643

Query: 61  VIIE--KANAAPIIVA-------YHFNSDLARL----QKAFPQGRTLDKDPCTIQEWN-- 105
            I+   K+     +V          F   L               ++D      +++   
Sbjct: 644 DILRFVKSKGERALVFVENRDIQAWFIEILNLEFGLNVMLINGDTSIDDRQWITKQFQRE 703

Query: 106 ---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              + +  +L   P + G GL L    N ++  + WW+    +Q  +R       + G  
Sbjct: 704 RGDDNEFDVLVLGPRAAGTGLTLTA-ANHVIHLTRWWNPAVEEQCNDR-----THRIGQT 757

Query: 163 RAVFVYYLIAQN------TIDELVLQRLRTKSTIQDLLLN 196
           R V V+  +A +      + D L+ + +  K  +   +L 
Sbjct: 758 RPVTVHLPMAVHPELGPASFDCLLHRLISRKMGLASNVLQ 797


>gi|118103418|ref|XP_424694.2| PREDICTED: similar to chromodomain helicase DNA binding protein 1
           [Gallus gallus]
          Length = 1260

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 66/222 (29%), Gaps = 29/222 (13%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE----- 54
           KQY+K    R      +G         +  ++  +  N           +  + +     
Sbjct: 398 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH 457

Query: 55  --------KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                    +    +I  +     +++       L  L +     +   +          
Sbjct: 458 LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL 517

Query: 98  -PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +N               +  N+    + +   + +W+       I      R 
Sbjct: 518 RKQALDHFNAEGSE--DXSFNIHXNRTNVCIXISSIDIIAFFWNPCSCIVYIF--VSLRX 573

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R+     AV +Y L+ + +++E +L+R + K  +  L++  +
Sbjct: 574 RRIQTLCAVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 615


>gi|83768080|dbj|BAE58219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1021

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
           ++II   N             L    + +            ++ + E   + +L      
Sbjct: 763 KIIIFYDNNNSAFWIAEGLELLGVDFRIYASTLKPKVRAAYLELFREQEDVRVLLMDLHQ 822

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGL++    + +   +        Q  +E   + R  + G  R VFV  L+ + T+++
Sbjct: 823 ASHGLHI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQTRPVFVETLVLKGTLED 876

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIH 204
            +L+R   +  + +  +   +++ + 
Sbjct: 877 KMLER---RKAMSEKEMQQAERDLLD 899


>gi|222637735|gb|EEE67867.1| hypothetical protein OsJ_25679 [Oryza sativa Japonica Group]
          Length = 1390

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 97   DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N    GK  +L A   +C  G++L  G + LV     W+  +      R  +
Sbjct: 1255 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKT-----RQAI 1308

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R  + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 1309 ARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 1350


>gi|195492235|ref|XP_002093904.1| GE21549 [Drosophila yakuba]
 gi|194180005|gb|EDW93616.1| GE21549 [Drosophila yakuba]
          Length = 1272

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              +       ++ +  I        II+   + + L  + +A        ++ CT +++ 
Sbjct: 1102 GDFSTKISSVVELVLKIKGDNEQEKIIIFSQWQAILIEIARALSLNGIHFRNKCTNKDFE 1161

Query: 106  E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +       +  L    +    GLNL      +       +  +     ER  + R  + G
Sbjct: 1162 DFKNPFSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGRIHRFG 1215

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
             K+   V+  I   T++E +L           L T   ++++ L++LKK
Sbjct: 1216 QKKPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1264


>gi|163796533|ref|ZP_02190492.1| superfamily II DNA/RNA helicase, SNF2 family protein [alpha
           proteobacterium BAL199]
 gi|159178093|gb|EDP62638.1| superfamily II DNA/RNA helicase, SNF2 family protein [alpha
           proteobacterium BAL199]
          Length = 1198

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G   ++     + +  + ++ +L A  A+   G+NLQ   +++V + L W+    +
Sbjct: 564 MIHGGMGREERMKAQEAFKHDPEVQVLLATDAAG-EGINLQR-AHLMVNYDLPWNPNRLE 621

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   RI      + G      ++ L+A+ T +  V ++L  K       L  
Sbjct: 622 QRFGRI-----HRIGQTEVCHLWNLVAEETREGDVYRKLLEKLEQARKALGG 668


>gi|289615990|emb|CBI57341.1| unnamed protein product [Sordaria macrospora]
          Length = 1811

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 91   GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               + K    I+++N +  + +      + G GLN+  G N +V F   +   E Q    
Sbjct: 1380 STPVGKRQAAIKDFNTDNSLDVYLISTKAGGVGLNI-PGANRVVLFDFGFTPAEEQ---- 1434

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               V R  + G K+ VFVY+L    T +  +    + 
Sbjct: 1435 -QAVGRAYRIGQKKDVFVYHLKVGGTYETAIHNVAKK 1470


>gi|53803233|ref|YP_115086.1| prophage LambdaMc01, SNF2 family helicase [Methylococcus capsulatus
           str. Bath]
 gi|53756994|gb|AAU91285.1| prophage LambdaMc01, helicase, SNF2 family [Methylococcus
           capsulatus str. Bath]
          Length = 925

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K     +   +    +L    A+   G+NLQ+   IL  F L W+  + +Q I R
Sbjct: 553 GDHGAKVAAERRFRQKDGPRVLVCT-AAGREGINLQF-ARILFNFDLPWNPMDVEQRIGR 610

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G      VY L+  +TI+  +   L  K T     +  +  + 
Sbjct: 611 I-----HRYGQNHTAQVYNLVLSDTIEGRIFLLLDEKLTEIARTVGKVDDQG 657


>gi|253755095|ref|YP_003028235.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
 gi|251817559|emb|CAZ55306.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
          Length = 2281

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1909 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1968

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1969 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2015


>gi|117926000|ref|YP_866617.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609756|gb|ABK45211.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 1170

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 26/201 (12%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L+   IE         K        V+  +++ W+E+     +  E+     +  
Sbjct: 456 QTIQELE-AEIETLRLLEMQAKL------VVHSGKDRKWEELSSLLQEKPEMFSASGHRR 508

Query: 70  PIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
            +I+       L  L++                 G   D      +E+      L+    
Sbjct: 509 KMIIFTEHKDTLNYLRERIGSLLGAPGAVVVIHGGVNRDDRRKIQEEFRNNPDVLILLAT 568

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G G+NLQ   N++V + L W+    +Q   RI      + G      ++ ++A  T 
Sbjct: 569 DAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNIVAHGTR 622

Query: 177 DELVLQRLRTKSTIQDLLLNA 197
           +  V  +L  K  I+   L  
Sbjct: 623 EGEVFTKLLEKLEIERAALGG 643


>gi|296808231|ref|XP_002844454.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238843937|gb|EEQ33599.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1172

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   +             L    + +       +    +  +NEG+ + +L      
Sbjct: 891  KIIIFYESENTAFWIAEGLELLGTDFRIYASTLKPSQKSEYLSVFNEGESVRVLLMDLRQ 950

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD       IE   + R  +    R V+V  L+ + T++E
Sbjct: 951  AAHGLHI-AAASRVYIVNPIWDP-----NIESQAIKRAHRISQSRPVYVETLVLKGTLEE 1004

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  +    +   +K+ + 
Sbjct: 1005 KMLKR---RKQMSSTEMQHAEKDMLD 1027


>gi|254283195|ref|ZP_04958163.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR51-B]
 gi|219679398|gb|EED35747.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR51-B]
          Length = 1184

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSA-------SKTVKCLQL---ANGAVYYDEEKHWKEVHDE 54
            +   E Y     + ++   +A       ++ +    L   A G V    +K W+E+   
Sbjct: 442 EELSAEEYELYADQVVDQATAAETIPELEAEILILKDLEHQALGVVQSGNDKKWEELSHL 501

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------------RTLDKDPCT 100
                E+  E  +   +I+       L  L                        D+    
Sbjct: 502 LQDRPEMYTESGSRRKLIIFTEHKDTLNYLVGRIRGMLGNPEAVITIHGGVNRDDRRKAQ 561

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N   + +L A  A+   G+NLQ   N++V + L W+    +Q   RI      + G
Sbjct: 562 EEFRNNRDVQVLVATDAAG-EGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIG 614

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 ++ LIA  T +  V QRL  K  I+   L  
Sbjct: 615 QTEVCHLWNLIASETREGEVFQRLFDKIEIEKQALGG 651


>gi|313681099|ref|YP_004058838.1| helicase domain protein [Oceanithermus profundus DSM 14977]
 gi|313153814|gb|ADR37665.1| helicase domain protein [Oceanithermus profundus DSM 14977]
          Length = 1133

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 25/185 (13%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            +   +  +LA   +   +++ W+E+   ++   E I        +++       L  L+
Sbjct: 455 IASLERLEKLARRVLQAGQDRKWQEL--ARLMGTEEI----KGRKLVIFTEHRDTLDYLR 508

Query: 86  KAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                             G   ++      E+   K  L+     + G G+NLQ   ++L
Sbjct: 509 NRLHTFLGNEDALVTIHGGMRREERHHAQAEFTNNKDVLVLLATDAAGEGINLQQ-AHLL 567

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           + + + W+    +Q   RI      + G      ++ L+A+ T +  V   L  K     
Sbjct: 568 INYDIPWNPNRLEQRFGRI-----HRIGQTEVCHMWNLVARGTREGDVFALLLKKLEAAA 622

Query: 193 LLLNA 197
             L  
Sbjct: 623 DALGG 627


>gi|209543188|ref|YP_002275417.1| helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530865|gb|ACI50802.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1160

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G T +     +  +N +  + ++ A+  + G G+NLQ G +++V + L W+    +Q 
Sbjct: 533 HGGITREARRAAVAAFNSDPAVRVMIAN-DAAGEGVNLQRGAHLMVNYDLPWNPNRIEQR 591

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L A NT +  V QRL  K       L  
Sbjct: 592 FGRI-----HRIGQTEICHLWNLCAVNTREGEVYQRLLDKLEEARAALGG 636


>gi|19552849|ref|NP_600851.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390520|ref|YP_225922.1| SNF2 family DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324406|dbj|BAB99030.1| Superfamily II DNA/RNA helicases, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
 gi|41325857|emb|CAF21646.1| Superfamily II DNA/RNA helicase, SNF2 family [Corynebacterium
           glutamicum ATCC 13032]
          Length = 892

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF--------NSDLARLQKA 87
           G            +   K++ +  + E+   +    ++  +F             R+   
Sbjct: 683 GMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALIFTYFLDVLDELEKHLGERVIGR 742

Query: 88  FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   K    +    +      L A   + G GLN+Q   ++ +           Q 
Sbjct: 743 ISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLNIQS-ASLCIICEPQVKPTIEQ- 800

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                 V R  + G    V V+ LI   T DE +L+ L  K+ + D
Sbjct: 801 ----QAVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHVFD 842


>gi|145498258|ref|XP_001435117.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402246|emb|CAK67720.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1210

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +++K    I+++ E +  +                  N +     WW+       IE  
Sbjct: 1092 MSVEKREKVIKQFKESQDAIALLLSLRATSTGLNLTMANNVFLVDPWWNPA-----IEDQ 1146

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             + R  + G +  V V   + +NTI++ +    + K        +   K+
Sbjct: 1147 AIGRADRIGQQNQVKVVRFLCRNTIEQSINLLHQKKKFQIKRTFSGEAKK 1196


>gi|76797967|ref|ZP_00780227.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
 gi|76586691|gb|EAO63189.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
          Length = 2271

 Score = 59.8 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|323127133|gb|ADX24430.1| SNF2 family protein [Streptococcus dysgalactiae subsp. equisimilis
            ATCC 12394]
          Length = 2274

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|289618249|emb|CBI54973.1| unnamed protein product [Sordaria macrospora]
          Length = 273

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 20/146 (13%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +   K    +++      A  +    F + L        +  +  +    +         
Sbjct: 127 LSRAKWALDDIVSGNDKGALKLYNVLFTATLKMRMMKAAKIFSSAQTAAVL--------F 178

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +  AHP +           + +      W+       +E   + R  + G  + V V   
Sbjct: 179 VPIAHPLN-------LTAASHVHVVEPHWNPS-----VEAQAIARAIRMGQMKNVIVTRY 226

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
           I + T++E ++     K T+  L  +
Sbjct: 227 IMKGTVEESIVALQTKKQTLAKLTFD 252


>gi|171692877|ref|XP_001911363.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946387|emb|CAP73188.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1523

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 23/168 (13%)

Query: 31   KCLQL------ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR- 83
            K  Q+      ++G  Y  +        D  ++ L  +      A  I+   +   L   
Sbjct: 1251 KLSQIKSIDLPSSGPSYTTKV-------DTLLRHLLWLRSSDPGAKSIIFSQYKEFLEVL 1303

Query: 84   ---LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                ++      + DK   T    ++  + +      +   GLNL    + +       +
Sbjct: 1304 ALAFKRYHIGYTSFDKPNGTTSFKSDPSVEVFLLSARAHSSGLNLVN-ASHVFICEPMLN 1362

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                 Q I R+      + G ++   V+  + + T++E +      K 
Sbjct: 1363 TALELQAIARVD-----RIGQEQETTVWLYLVEGTVEEGIYDLSVRKR 1405


>gi|157419748|gb|ABV55437.1| SNF2-related helicase [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 2278

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1906 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1965

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1966 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2012


>gi|77164180|ref|YP_342705.1| DEAD/DEAH family helicase [Nitrosococcus oceani ATCC 19707]
 gi|254436075|ref|ZP_05049582.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882494|gb|ABA57175.1| helicase, DEAD/DEAH box family [Nitrosococcus oceani ATCC 19707]
 gi|207089186|gb|EDZ66458.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 760

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 31/217 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSA-------SKTVKCLQL---ANGAVYYDEEKHWKEVHDE 54
            +   E Y     + ++   +A       ++ +    L   A G V    +K W+E+   
Sbjct: 18  EELSAEEYELYADQVVDQATAAETIPELEAEILILKDLEHQALGVVQSGNDKKWEELSHL 77

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG--------------RTLDKDPCT 100
                E+  E  +   +I+       L  L                        D+    
Sbjct: 78  LQDRPEMYTESGSRRKLIIFTEHKDTLNYLVGRIRGMLGNPEAVITIHGGVNRDDRRKAQ 137

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +  N   + +L A  A+   G+NLQ   N++V + L W+    +Q   RI      + G
Sbjct: 138 EEFRNNRDVQVLVATDAAG-EGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIG 190

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 ++ LIA  T +  V QRL  K  I+   L  
Sbjct: 191 QTEVCHLWNLIASETREGEVFQRLFDKIEIEKKALGG 227


>gi|223932202|ref|ZP_03624206.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223899183|gb|EEF65540.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 2274

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|295102472|emb|CBL00017.1| DNA methylase [Faecalibacterium prausnitzii L2-6]
          Length = 1989

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   GK+ +L    A  G G N+Q     +    + W   +  Q
Sbjct: 1601 FIHNADTEGKKADLFSKVRSGKVRVLLGSTAKMGAGTNVQTLLVAVHHLDVGWRPSDMTQ 1660

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V+VY  + + T D  + Q L  K      ++ +
Sbjct: 1661 RNGRIIR----QGNKNKQVYVYNYVTEGTFDAYLWQTLENKQKFISQIMTS 1707


>gi|46138107|ref|XP_390744.1| hypothetical protein FG10568.1 [Gibberella zeae PH-1]
          Length = 786

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 22/147 (14%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-----------P 98
             K++++   I    K+     +V  ++ + L  LQ        + +             
Sbjct: 640 STKLQSVADNICLRSKSTDRVSLVFSYWTTTLNLLQTMLEDRGIVLRRIDGSLGNGERLR 699

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N+  I +L     +   GL L      +      W+       +E   + R  +
Sbjct: 700 VLNEFKNDPAISVLLITMQTGAVGLTLT-VATQVHIIEPQWNPS-----VEEQAIARALR 753

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLR 185
            G    V V+  I +NT++E  ++   
Sbjct: 754 MGQSNIVKVFRYIMKNTVEE--MEAQE 778


>gi|327283199|ref|XP_003226329.1| PREDICTED: e1A-binding protein p400-like [Anolis carolinensis]
          Length = 3122

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 72/193 (37%), Gaps = 25/193 (12%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y+   ++L   L+ +      +     +  Q     +    +    +    K++AL V+
Sbjct: 1816 LYNHKMKQLRHHLKEK------AGPFLHQLQQFITPQLLQFPDLRLVQYDAGKLEALAVL 1869

Query: 63   IEK--ANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWN-EGKI 109
            ++K  +    +++       L  L+                   ++   +++ +N + +I
Sbjct: 1870 LQKLKSEGRRVLILSQMILMLDILEHFLNFHFLTYVRIDECANQEERQESMKTFNRDKRI 1929

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    S   G+NL    + +VF+    +      +++        + G  + + +Y 
Sbjct: 1930 FCAILSSHSRSTGVNL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHIYR 1983

Query: 170  LIAQNTIDELVLQ 182
            L++ N+++E +L+
Sbjct: 1984 LVSGNSVEEKLLK 1996


>gi|312104297|ref|XP_003150368.1| hypothetical protein LOAG_14827 [Loa loa]
 gi|307754467|gb|EFO13701.1| hypothetical protein LOAG_14827 [Loa loa]
          Length = 156

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R  +      +  +D           + +      + G G+NL    +I+VF  L W+  
Sbjct: 12  RSIRIDGTTVSRSRDEQCRLFQENDDVMVAVLSITAAGIGVNLTA-ASIVVFAELHWNPG 70

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  +    R  + G K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 71  TL-----KQAEDRAHRLGQKDSVFVQYLIAKGTADDVLWPLIQKKLDV 113


>gi|281207984|gb|EFA82162.1| SNF2-related domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 498

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EG 107
           K + D+     + +I   +   +                             +  +  + 
Sbjct: 112 KFIEDKLEDNSKFLIFAHHKTVMDGIEQLVKKKKVEYIKIDGTTPAHARSNLVNIFQTDE 171

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           KI +      + G GL L    ++ +F  L+W               R  + G  R+V +
Sbjct: 172 KIKVAILSITAAGTGLTLTA-ASVAIFAELYWTPGVLM-----QAEARVHRFGQNRSVLI 225

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            YL+  NTIDE +   L +K  +   +L+ 
Sbjct: 226 QYLVGINTIDESIWSMLESKKDVLGRILDG 255


>gi|260793856|ref|XP_002591926.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
 gi|229277139|gb|EEN47937.1| hypothetical protein BRAFLDRAFT_184347 [Branchiostoma floridae]
          Length = 563

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                  +  +    +      +   GL L    +++VF  L+W+              R
Sbjct: 463 RQQLCDRYQTQDSCQVALLSITAASTGLTLTA-ASLVVFTELFWNPGVLV-----QAEDR 516

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G +  V V+YL+A+ T D+ +   ++ K  +   
Sbjct: 517 AHRIGQQDCVNVHYLVARGTADDYIWPLVQGKLDVLSK 554


>gi|298712299|emb|CBJ26750.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 238

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           D       N+    +      +   G+NL    N +       +L       E+  + R 
Sbjct: 98  DIQANAFANDPPTTVFLLSVRAGAVGINLTQ-ANHVFLLEPMLNLAL-----EKQAIGRV 151

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + G  R V V  L+  ++++  +L     K  
Sbjct: 152 HRLGQTRPVTVTKLVLADSVETRILAM--RKMQ 182


>gi|153004208|ref|YP_001378533.1| helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027781|gb|ABS25549.1| helicase domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 921

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    ++E+   +  +L     +   GLNLQ+  N++V + L W+ +  +Q I R    
Sbjct: 475 DKRQALVEEFRN-RTQILIMT-EAGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC--- 528

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G +R V V   + + N  D  + + L  K  + D +  +
Sbjct: 529 --HRYGQQRDVLVLNFLNRQNAADNRLYELLSQKLALFDGVFGS 570


>gi|113476663|ref|YP_722724.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|113477649|ref|YP_723710.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110167711|gb|ABG52251.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168697|gb|ABG53237.1| helicase-like [Trichodesmium erythraeum IMS101]
          Length = 1065

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                Q++  G I +L     S   GLNLQ  G +++ + + W+    +Q I R+    Q
Sbjct: 824 KEKIKQKFRAGSIKILLCT-ESASEGLNLQTCG-VIINYDMPWNPMRVEQRIGRLDRIGQ 881

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   V +Y      T++  V ++LR +      ++  L+
Sbjct: 882 F----YPTVRIYNFYYDGTVEAKVYKKLRDRIDTFQNIVGNLQ 920


>gi|3068759|gb|AAC41305.1| Mi-2 [Xenopus laevis]
          Length = 410

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              + +V +   W+        +    +R  + G  R V +Y  + + +++E + Q  + 
Sbjct: 1   ATADTVVIYDSDWNP-----HNDIQAFSRAHRIGQNRKVMIYRFVTRASVEERITQVAKK 55

Query: 187 KSTIQDLLL 195
           K  +  L++
Sbjct: 56  KMMLTHLVV 64


>gi|146318616|ref|YP_001198328.1| SNF2 family protein [Streptococcus suis 05ZYH33]
 gi|145689422|gb|ABP89928.1| SNF2 family protein [Streptococcus suis 05ZYH33]
          Length = 2274

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|253751738|ref|YP_003024879.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
 gi|251816027|emb|CAZ51647.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
          Length = 2274

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2008


>gi|261334529|emb|CBH17523.1| SNF2 DNA repair protein, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1068

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              +       +T  +    ++ + +     L      + G GL +      ++     +
Sbjct: 689 RPIVFCRLDGRKTEWERSEALRSFASSTGADLFLLSTKAGGIGLTITS-ATRVIIADGSF 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--A 197
           +  +     +   + R  + G  + V+ Y L+   T +  + Q+   K  +   ++   +
Sbjct: 748 NPAD-----DTQAIGRAYRYGQTQPVYAYRLVCYQTFEHRMFQQKLAKEWLFRTVVEEAS 802

Query: 198 LKKETI 203
           LK++++
Sbjct: 803 LKRDSL 808


>gi|239817547|ref|YP_002946457.1| SNF2-related protein [Variovorax paradoxus S110]
 gi|239804124|gb|ACS21191.1| SNF2-related protein [Variovorax paradoxus S110]
          Length = 1291

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            Y+F  +   ++     G +  +     +   +    ++     + G GLN+    N +  
Sbjct: 988  YYFLKETFGIRPFIINGDSQGRQGYIDKFSAKSGFDVIILSTLAAGAGLNVTA-ANHVFH 1046

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY--YLIAQN--TIDELVLQRLRTKSTI 190
            F+  W+  +     E     R  + G +R VFVY   ++A N  T +  + Q L+ K+ +
Sbjct: 1047 FTRAWNPSK-----ESQATDRAFRIGQERDVFVYCPTVVADNFRTFELRLDQLLKRKAGL 1101

Query: 191  QDLLLNA 197
                L+ 
Sbjct: 1102 AGSTLDD 1108


>gi|71755459|ref|XP_828644.1| SNF2 DNA repair protein [Trypanosoma brucei TREU927]
 gi|70834030|gb|EAN79532.1| SNF2 DNA repair protein, putative [Trypanosoma brucei]
          Length = 1068

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              +       +T  +    ++ + +     L      + G GL +      ++     +
Sbjct: 689 RPIVFCRLDGRKTEWERSEALRSFASSTGADLFLLSTKAGGIGLTITS-ATRVIIADGSF 747

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--A 197
           +  +     +   + R  + G  + V+ Y L+   T +  + Q+   K  +   ++   +
Sbjct: 748 NPAD-----DTQAIGRAYRYGQTQPVYAYRLVCYQTFEHRMFQQKLAKEWLFRTVVEEAS 802

Query: 198 LKKETI 203
           LK++++
Sbjct: 803 LKRDSL 808


>gi|189501403|ref|YP_001960873.1| helicase domain-containing protein [Chlorobium phaeobacteroides
           BS1]
 gi|189496844|gb|ACE05392.1| helicase domain protein [Chlorobium phaeobacteroides BS1]
          Length = 774

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI---QEWNEGKIPLLFAHPAS 118
           I  +       +       L R +       ++ ++          ++  + +L A  A+
Sbjct: 116 IFTEHRDTLNYLEDRITRFLGRNEAVVIIHGSVGREERLKVQESFRHDPDVQVLLATDAA 175

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              G+NLQ   +++V + L W+    +Q   RI      + G     +++ L+A +T + 
Sbjct: 176 G-EGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCYLWNLVADDTREG 228

Query: 179 LVLQRLRTKSTIQDLLLNA 197
            V +RL  K       L  
Sbjct: 229 DVYRRLLEKLEQAREALGG 247


>gi|197308160|gb|ACH60431.1| Swi2/Snf2-related chromatin remodeling ATPase [Pseudotsuga
           macrocarpa]
          Length = 73

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++N+      +      + G G+NL    +  + +   W+ +     ++   + R  +
Sbjct: 1   IKDFNDPDSKFCIFLLSTRAGGLGINLTA-ADTCIIYDSDWNPQ-----MDMQAMDRCHR 54

Query: 159 AGFKRAVFVYYLIAQNTID 177
            G  + V V  LI  ++++
Sbjct: 55  IGQTKPVHVSRLITAHSVE 73


>gi|322708739|gb|EFZ00316.1| SNF2 family helicase [Metarhizium anisopliae ARSEF 23]
          Length = 1144

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQKAFP 89
              Q     V     K    +        +   II   N             L      + 
Sbjct: 859  LRQ--THLVSTVSSKLSYLIDSIVRHQDDDKIIIFYENENVAWYLASVLDMLQVQHLIYA 916

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +  T ++    +  ++      +L    +    GL++    + + F +   + +     +
Sbjct: 917  RTLTTERKAQYVNTFHHNPVFRVLLMDLSQAAFGLDM-REASRVYFINPVLNPQ-----V 970

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            E   + R R+   ++ VFV  L+ +++IDE++L+R
Sbjct: 971  EAQAIGRVRRISQQKPVFVETLVLKDSIDEVILER 1005


>gi|126453422|ref|YP_001067908.1| helicase, C-terminal:dead/deah box helicase, n-terminal
           [Burkholderia pseudomallei 1106a]
 gi|242317373|ref|ZP_04816389.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Burkholderia
           pseudomallei 1106b]
 gi|126227064|gb|ABN90604.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Burkholderia pseudomallei 1106a]
 gi|242140612|gb|EES27014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Burkholderia
           pseudomallei 1106b]
          Length = 1043

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------P 89
             + +         E  KA +  + +      IV   F +    L +             
Sbjct: 501 FGFADLSRNDSKFAEFSKAFKRFMAEDRDTKAIVFTTFRATARYLVERLSAENVEAGLLM 560

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G   DKD        +    +L         G++LQ+   ++V + L W+    +Q I 
Sbjct: 561 GGAEFDKDAVVSAFREDRNCRVLVCT-DVAAEGVDLQF-CRLVVNYDLPWNPMRIEQRIG 618

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           RI    Q      + + V+  + ++TID L++ RL  +  + +  L   ++
Sbjct: 619 RIDRIGQM----SKRILVWNFVHKDTIDALIIARLAKRIGVFESTLGETEE 665


>gi|119500356|ref|XP_001266935.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119415100|gb|EAW25038.1| SNF2 family helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 1181

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             +          +           +I +         HGL++    + + F +       
Sbjct: 932  YRMYASTLSPELRTSYLNLFRESEEIRVFLMDLHQASHGLHI-ANASRVFFVNP-----I 985

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             Q  +E   + R  + G  R V+V  L+ ++T+++ +L+R   +  + +  +   +K+ +
Sbjct: 986  WQPNVESQAIKRAHRIGQTRPVYVETLVLKDTLEDKMLKR---RKAMSEKEMQEAEKDLL 1042

Query: 204  H 204
             
Sbjct: 1043 D 1043


>gi|157873415|ref|XP_001685219.1| helicase  [Leishmania major strain Friedlin]
 gi|68128290|emb|CAJ08421.1| helicase-like protein [Leishmania major strain Friedlin]
          Length = 949

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + L      + G GLNL  G + ++     ++        +   V R  + G +  V
Sbjct: 780 QPGVFLFLISTRAGGTGLNLT-GADTVILLDSDFNP-----HNDLQAVDRCHRIGQRNPV 833

Query: 166 FVYYLIAQNTID-ELVLQRLRTKSTIQDLLLNA 197
            VY L++ +T++ E     +  K  ++ L+L  
Sbjct: 834 AVYRLVSPHTVEDEWHSGIVDRKLKLEHLVLGG 866


>gi|254481757|ref|ZP_05095000.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
 gi|214037886|gb|EEB78550.1| Type III restriction enzyme, res subunit family [marine gamma
           proteobacterium HTCC2148]
          Length = 1180

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKA--- 87
           Q+        E        D K   L+ II++        ++V   F   L+ L +    
Sbjct: 639 QIVKKITAVKELAGALGDDDPKYDRLKKIIQEKQALPNRRLMVFSTFRHTLSYLSERLTQ 698

Query: 88  -------FPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                     G    +       +         + +L         GL+ Q+  + +V +
Sbjct: 699 DGYEIGLVHGGVPDSERVLLRNRFKLDSNDSDSLDVLLFS-EVGCEGLDYQF-CDAMVNY 756

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+  + +Q I RI    Q+       V +Y LI   T+D  +  R   +  I +  +
Sbjct: 757 DLPWNPMKIEQRIGRIDRNGQK----SEKVVIYNLITPGTVDAEIYDRCLMRIGIFNRSV 812

Query: 196 NALKK 200
            A ++
Sbjct: 813 GASEE 817


>gi|238588607|ref|XP_002391776.1| hypothetical protein MPER_08746 [Moniliophthora perniciosa FA553]
 gi|215456905|gb|EEB92706.1| hypothetical protein MPER_08746 [Moniliophthora perniciosa FA553]
          Length = 219

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLW 138
           ++  + +      +  +      E       +      +   G+ L   G N +V F   
Sbjct: 22  EIELVPQYCGIANSAQRVEKGPDEQGVDFYKIKTPTGHAGAGGVGLNLTGANRVVIFDPN 81

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           W+        +   + R  + G  R V+VY L+    ++EL+  R   K     
Sbjct: 82  WNPAH-----DLQAMDRAFRFGQWRDVYVYRLLGAGAMEELIYARQLLKQQQMA 130


>gi|307110846|gb|EFN59081.1| hypothetical protein CHLNCDRAFT_9310 [Chlorella variabilis]
          Length = 374

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 4   YHK-----FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-KIK 57
           Y +      QRE+    +G      N   +      + N  +  +       +  E ++ 
Sbjct: 215 YQQALFRLMQREMQGTGRGGLKGVNNVLMEM---RNICNHPLISEAALPPHSLPAEVRLC 271

Query: 58  ALEVIIEKA------NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
               ++++           +++       L  +                G    K    +
Sbjct: 272 GKLELLDRMLVKLRAGGHKVLLFSTMTRALDVVSDYLGWRGFRHLRLDGGTAAGKRGELV 331

Query: 102 QEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + +N+  G + +      + G GLNLQ G + ++ +   W+ + 
Sbjct: 332 ERFNDPGGGVFVFLLSIRAGGVGLNLQ-GADTVIMYDTDWNPQM 374


>gi|295980982|emb|CBJ57230.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 461

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 89  FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 148

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              RI      Q    + V +Y+ I + + D  +      K      ++ +  KE I 
Sbjct: 149 RNGRIIR----QGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTS--KEPIR 200


>gi|225869333|ref|YP_002745281.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702609|emb|CAX00640.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2281

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1909 FVHDANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1968

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1969 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 2015


>gi|323186569|gb|EFZ71913.1| helicase conserved C-terminal domain protein [Escherichia coli 1357]
          Length = 2221

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 1334 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVGILNAQTVAEAGKTGQKLKAVKPPKELP 1393

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1394 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1452

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1453 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1508

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1509 KRKAGWISDILRSDKSEM 1526


>gi|313889303|ref|ZP_07822954.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313122351|gb|EFR45439.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1555

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1183 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1242

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 1243 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 1289


>gi|194766057|ref|XP_001965141.1| GF23602 [Drosophila ananassae]
 gi|190617751|gb|EDV33275.1| GF23602 [Drosophila ananassae]
          Length = 752

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K K   +I          ++           +   Q R+  +              +   
Sbjct: 530 KEKMKFIIFAHHRVMMDAISDCLAELKVHYIRIDGQTRSDLRADFVDTFQKNSSCKVALL 589

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +C  G+ L     +++F  L W+             +R  + G  +AV   YL+A  
Sbjct: 590 SLKACNSGITLTA-AEMILFAELDWNPSTL-----AQAESRAHRIGQTKAVICRYLMAHG 643

Query: 175 TIDELVLQRLRTKSTIQDLL 194
           T D+ +   L+ K  +   +
Sbjct: 644 TADDTIWAMLKNKQEVLSKV 663


>gi|78190557|gb|ABB29600.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Platynereis dumerilii]
          Length = 375

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 35/176 (19%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------- 42
           K Y    K QRE Y  +  ++I+  N           +  ++  + AN    +       
Sbjct: 201 KIYIGLSKMQREWYTKILMKDIDVVNGAGKSDKMRLLNILMQLRKCANHPYLFDGAEPGP 260

Query: 43  -DEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
                     +  K+  L+ ++   +A  + +++       L  L+      R       
Sbjct: 261 PYTTDQHLVDNAGKMVLLDKLLMRLEAQDSRVLIFSQMTRMLDILEDYCQWRRYEYCRLD 320

Query: 93  ---TLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                ++   +I ++N       +      + G G+NL    +++V +   W+ + 
Sbjct: 321 GQTPHEERQKSIDDFNRPDSTKFVFMLSTRAGGLGINL-ATADVVVLYDSDWNPQV 375


>gi|301091941|ref|XP_002896145.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262094965|gb|EEY53017.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1481

 Score = 59.4 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 56/176 (31%), Gaps = 14/176 (7%)

Query: 37   NGAV-YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL-------ARLQKAF 88
            +     + +        D  ++ +E++ ++  +   ++   ++  L        R+    
Sbjct: 1162 SHPSPLHCDGGSLGSKLDALLERVEMLRQENPSVKCLLFSQWSQMLELVMQPLRRVGVYC 1221

Query: 89   PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                T  + P  + ++       + A P   G           ++              I
Sbjct: 1222 FMYGTKRQLPKLLAQFQACPAACVLALPFKVGANGLNIVEATEVLLIEPLLS-----SSI 1276

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            E   V R  + G  R   V+  I Q +++E +  RL  K        +   KE I+
Sbjct: 1277 EAQAVNRVHRLGQTRQTRVHRFIVQGSVEERIF-RLGHKLKDHGAEDDQESKEEIN 1331


>gi|83589502|ref|YP_429511.1| helicase-like [Moorella thermoacetica ATCC 39073]
 gi|83572416|gb|ABC18968.1| Helicase-like protein [Moorella thermoacetica ATCC 39073]
          Length = 972

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 24/158 (15%)

Query: 52  HDEKIKALEVIIEK------ANAAPIIVAYHFNSD----------LARLQKAFPQGRTLD 95
           +D K   L  II +            I+   F             L           +  
Sbjct: 486 NDIKFTRLLEIINELRIQENNPRLKFIIFTEFRETQAYLEERLTSLGYRTALINGAMSTT 545

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    ++ +             + G G+NLQ+  +IL+ + L W+    +Q I RI    
Sbjct: 546 ERIAQVERFRREAD--FLISTDAGGEGINLQF-CHILINYDLPWNPMRLEQRIGRID--- 599

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G +  V V  L   +T++  V + +  K      
Sbjct: 600 --RIGQEHDVKVINLQLADTVENRVREVIENKLDTIRR 635


>gi|125984352|ref|XP_001355940.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
 gi|54644258|gb|EAL32999.1| GA17662 [Drosophila pseudoobscura pseudoobscura]
          Length = 747

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              +   Q R+  +        N+    +      +C  G+ L     ++VF  L W+  
Sbjct: 553 HHIRIDGQTRSDLRADMVSAFQNKSSCRVAVLSLKACNAGITLTA-AELIVFAELDWNPS 611

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                      +R  + G  + V   YL+A  T D+ + + L  K  +   +
Sbjct: 612 TL-----AQAESRAHRIGQTKTVICRYLLANETADDTIWKMLINKQKVLSQV 658


>gi|328852113|gb|EGG01261.1| hypothetical protein MELLADRAFT_79036 [Melampsora larici-populina
            98AG31]
          Length = 2231

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + +   R         T  +    + E+    +  I +L  H              N   
Sbjct: 2094 YEALEHRDIGVARVKGTARQQMQVMTEFQEEADPDIRVLLLHATDSSASGANLTNANYAF 2153

Query: 134  FFSLWWDL-EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            F S  +   ++  +  E   + R R+ G  + V V  L+  +TID  +      K+  + 
Sbjct: 2154 FVSPLFLPTQDKFKACETQAIGRLRRYGQTKKVHVIRLLTTDTIDTQIYGHRHQKTQDEL 2213

Query: 193  LL-LNALKKETI 203
             L + A +K+ I
Sbjct: 2214 RLEIEAARKKQI 2225


>gi|212542133|ref|XP_002151221.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210066128|gb|EEA20221.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 1209

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   N             L    + +       +    +  + E   + +L      
Sbjct: 917  KIIIFYENNNTAFWIAEGLELLGIDFRIYANTLKTSQKAAYLSLFEESSSVRILLMDLRQ 976

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  W        +E   + R  + G  R VFV  L+ ++T++E
Sbjct: 977  ASHGLHI-ASASRVFIVNPIWRP-----YVESQAIKRAHRIGQTRPVFVETLVLKDTLEE 1030

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L R   +  + +  +   +K+ + 
Sbjct: 1031 KMLHR---RQEMSNSEMQHAEKDMLD 1053


>gi|254521535|ref|ZP_05133590.1| SNF2-related [Stenotrophomonas sp. SKA14]
 gi|219719126|gb|EED37651.1| SNF2-related [Stenotrophomonas sp. SKA14]
          Length = 582

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 13/140 (9%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQK--------AFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           +   +   +++        +  Q+         +    + ++     + +  G   ++  
Sbjct: 403 LLLESGQKVLLFGWHREVYSIWQEKLAAYNPVMYTGSESPNQKQAAKEAFIAGDSQVMLI 462

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              S      LQ+  + +VF  L W    H+Q I R+      + G    V  Y+L++ +
Sbjct: 463 SLRSGAGIDGLQHVCSTVVFGELDWSPGVHEQCIGRV-----HRDGQAEPVMAYFLLSDS 517

Query: 175 TIDELVLQRLRTKSTIQDLL 194
             D +V   L  K    + +
Sbjct: 518 GSDPIVSDVLGVKREQIEGV 537


>gi|70993794|ref|XP_751744.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66849378|gb|EAL89706.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159125336|gb|EDP50453.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 1180

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             +          +           +I +         HGL++    + + F +       
Sbjct: 931  YRMYASTLSPELRTSYLNLFRESEEIRVFLMDLHQASHGLHI-ANASRVFFVNP-----I 984

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             Q  +E   + R  + G  R V+V  L+ ++T+++ +L+R   +  + +  +   +K+ +
Sbjct: 985  WQPNVESQAIKRAHRIGQTRPVYVETLVLKDTLEDKMLKR---RKAMSEKEMQEAEKDLL 1041

Query: 204  H 204
             
Sbjct: 1042 D 1042


>gi|325120874|emb|CBZ56429.1| putative SNF2 family N-terminal domain-containing protein [Neospora
           caninum Liverpool]
          Length = 791

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCG 120
           + +      +IV  H  + L  +++   Q           +   + +   +      +CG
Sbjct: 502 LFKSGGDMKVIVFAHHRAVLDYIEEYLQQTEKKQSVRIDGRTPQDKRERLVALLSITACG 561

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           HGLNL   G  ++F  L+W   +  Q  +R             ++ ++YLIA+ T+DE V
Sbjct: 562 HGLNLTAAGT-VIFAELYWVPGQMIQAEDRSHRI----GTEFSSIQIHYLIAEGTLDETV 616

Query: 181 LQRLRTKSTIQDLLLNALKKET 202
            + L+ K  +    L+  +++ 
Sbjct: 617 FRILQRKWRLMTCTLDGEQQQL 638


>gi|118580295|ref|YP_901545.1| helicase domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503005|gb|ABK99487.1| helicase domain protein [Pelobacter propionicus DSM 2379]
          Length = 1172

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 31/217 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKC----------LQLANGAVYYDEEKHWKEVHDE 54
            +   + Y   +   ++   +A    +           +  A+  V+  +++ W+E+ + 
Sbjct: 431 DEMGDDEYERFEEAVVDQATAAQTIQELEVEIHILEGLVNQASDVVHSGQDRKWEELSNL 490

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTI 101
                E+  +      +I+       L  L                   G   D      
Sbjct: 491 LQNTPEMRDKDGRQRKLIIFTEHKDTLHYLVMKIRGLIGSEDSVVTIHGGVKRDDRRKIQ 550

Query: 102 QEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           + + N+ ++ +L A   + G G+NLQ   N++V + L W+    +Q   RI      + G
Sbjct: 551 ELFRNDPEVRVLVAT-DAAGEGINLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIG 603

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +   ++ ++A  T +  V QRL  K  I+   L  
Sbjct: 604 QDQVCHLWNMVANETREGDVFQRLLDKLEIERQALGG 640


>gi|315052578|ref|XP_003175663.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
 gi|311340978|gb|EFR00181.1| DNA repair protein RAD5 [Arthroderma gypseum CBS 118893]
          Length = 1073

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 47   HWKEVHDEKIKALEV----IIEKANAAPIIVAYHFN---------SDLARLQKAFPQGRT 93
                +   K++A++      ++++    I +   F           D+         G+ 
Sbjct: 859  TNYNIPSAKLRAVKTFVSRWLKESPGTKITIFTQFIGMISALCTLCDVEGWGYTTLCGKI 918

Query: 94   LDK-DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              +     I+ +  +    +L +   + G GLNL    N  +   LWW+     + IE+ 
Sbjct: 919  HHRTRHSNIKRFREDKNTSILISSLKTGGVGLNLT-MANKCILVDLWWN-----EAIEQQ 972

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               R  + G ++ V +  +  +NT+D+ +      K+      + 
Sbjct: 973  AFCRLFRIGQEKDVEIVRICVENTVDDRLQLIQSVKTKHIKQAMG 1017


>gi|329667808|gb|AEB93756.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus
           johnsonii DPC 6026]
          Length = 630

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 21/166 (12%)

Query: 50  EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKD 97
            V   K +    +I+K  +    ++V   F   +                          
Sbjct: 444 NVESPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTILVYGATPKQDR 503

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI      
Sbjct: 504 EGMINNFRTGDAQVLVSNPNTLGESISLHQKVHDAVYFEYNFNLTFMLQSRDRINRLGLP 563

Query: 158 QAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
              + R    YYL+ +        ID  V ++L+ K  +    ++ 
Sbjct: 564 ANQYTR---YYYLMTKGDVAHMGFIDNTVYKKLKDKEKVMIDAIDG 606


>gi|331655819|ref|ZP_08356808.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331046593|gb|EGI18682.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 1830

 Score = 59.0 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
            +G+ +   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 943  EGKQVIFTDEKTQHQKLKRIICNALDLEPSKVGILNAQTVAEAGKTGKKLKAVKPPKELP 1002

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                   I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 1003 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 1061

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 1062 LHRGTTDIHHLTLPWTPASIAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 1117

Query: 185  RTKSTIQDLLLNALKKET 202
            + K+     +L + K E 
Sbjct: 1118 KRKAGWISDILRSDKSEM 1135


>gi|301608898|ref|XP_002934016.1| PREDICTED: zinc finger Ran-binding domain-containing protein
           3-like, partial [Xenopus (Silurana) tropicalis]
          Length = 489

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ----------- 102
            K  A++  I+       +    F   L+ LQ               I            
Sbjct: 348 AKAGAVKDYIKMMLENDKLKFLVFAHHLSMLQACTEAAIESKARYIRIDGSVPSSERIHL 407

Query: 103 ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                N+ +  +      + G GL        +VF  L+WD         +    R  + 
Sbjct: 408 VHQFQNDPETRVAILSIQAAGQGLTFTA-ATHVVFAELYWDPGHI-----KQAEDRAHRI 461

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
           G   +V ++YLIA+ T+D L+   L  K
Sbjct: 462 GQCSSVHIHYLIARGTMDTLMWGMLNRK 489


>gi|331234292|ref|XP_003329806.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309308796|gb|EFP85387.1| ATPase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 328

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 24/168 (14%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEV----IIEKANAAPIIV 73
           ++ +   + V   QL N     ++EK           KI  L       +   N A  ++
Sbjct: 156 DSIHFVGELVNLRQLCNPPALIEKEKGTGGYFWNQSSKIVHLLKDLPLFLASGNQARAVI 215

Query: 74  AYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              F   L            +    + +     +       W +    +L A   + G G
Sbjct: 216 FSEFKRFLQIIEIALNEWGIQFTTHYGKMDNNTQRKNLEYFWRDVSCKVLLATIKTEGVG 275

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++L    + +      W+    +Q I+R+      Q G K  V V  L
Sbjct: 276 IDL-RCAHKVYLMEPTWNPAVEEQAIDRL-----YQIGQKERVQVVRL 317


>gi|157869750|ref|XP_001683426.1| hypothetical protein [Leishmania major strain Friedlin]
          Length = 471

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
                  + G GLNLQ   + +    + ++ +      +   ++R  + G  + V V+ L
Sbjct: 123 CFLISKVAGGAGLNLQA-ADTVFLLDVDYNPQR-----DAQALSRVYRVGQSKEVRVFRL 176

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I  + I+  ++     K  +   ++ A
Sbjct: 177 IIDHAIEHDIVAIHEAKDDLGRAVVQA 203


>gi|224100259|ref|XP_002311805.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222851625|gb|EEE89172.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 3427

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 65/268 (24%), Gaps = 87/268 (32%)

Query: 3    QYHKFQRELYCDLQGENIE--AFNSASKTVKCLQLANGAVYYDEEKHW---------KEV 51
             Y K   +   D  G      A +  +  ++   + N                       
Sbjct: 1286 AYQKLLMKRVEDNLGSIGNPKARSVHNSVMELRNICNHPYLSQLHADEACSSLVDTLIPK 1345

Query: 52   H--------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------G 91
            H          K++ L+ ++ K       ++        L  +++               
Sbjct: 1346 HFLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTWKQYRYLRLDGH 1405

Query: 92   RTLDKDPCTIQEWNEGKIPLL--------------------------------------- 112
             +       I  +N+   P                                         
Sbjct: 1406 TSGGDRGSLIDSFNQQDSPYFIFLLRSFILTNQIFPSLCFCPGDSLSCMLGVLDALFGVY 1465

Query: 113  ---FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                    + G G+NLQ   + ++ F   W+ +     ++     R  + G KR V    
Sbjct: 1466 QGVVVSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQARAHRIGQKREVQ--- 1516

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 T++E V      K  + +  + A
Sbjct: 1517 -----TVEEQVRASAEHKLGVANQSITA 1539


>gi|154309155|ref|XP_001553912.1| hypothetical protein BC1G_07472 [Botryotinia fuckeliana B05.10]
 gi|150852515|gb|EDN27707.1| hypothetical protein BC1G_07472 [Botryotinia fuckeliana B05.10]
          Length = 1420

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 21/161 (13%)

Query: 51   VHDEKIKALEVII----EKANAAPIIVAYHFN---SDLARLQKAFPQGRTL--------D 95
            +   K  AL+ ++    E+A    +++   F      + R+ KA   G            
Sbjct: 1201 IPSAKTTALKALLLKGFEEAPDDKVVIYVQFRTLARIIGRMCKAEGWGFLYLTGDASLEH 1260

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +   T +  N   I +L A     G GLN  +  N  +   LWW+    Q         R
Sbjct: 1261 RSKATKEFRNRDDIQILIAGLKCGGLGLNFPF-ANRCISLDLWWNHAVEQ-----QAFGR 1314

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  +  ++  L+  N++D  +L     K    +  ++
Sbjct: 1315 IFRIGQNKETWMTRLVVANSVDMRLLGMQNWKLKACEKAID 1355


>gi|163848249|ref|YP_001636293.1| helicase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526160|ref|YP_002570631.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669538|gb|ABY35904.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450039|gb|ACM54305.1| helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 1189

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++     Q  ++  + +L A   + G G+NLQ   +++V + L W+    +Q   R
Sbjct: 563 MGREERRKAQEQFLHDPAVRVLVAT-DAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGR 620

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I      + G     F++ L+A  T +  V +RL  K       L  
Sbjct: 621 I-----HRIGQTEVCFLWNLVADETREGDVYRRLLDKLEEARRALGG 662


>gi|156396819|ref|XP_001637590.1| predicted protein [Nematostella vectensis]
 gi|156224703|gb|EDO45527.1| predicted protein [Nematostella vectensis]
          Length = 1438

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------PCTIQEWNEGKIPLLF 113
            I  + N+A  +V   +   L  + KA  +     +                 +  I +L 
Sbjct: 1268 IRAEDNSAKCLVFSTWQDVLDVIAKALAENDVYFRHITTSRKLPEDLHAFKVDPDISVLL 1327

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                S  +GLN+      ++      +            + R  + G  +   VY  I Q
Sbjct: 1328 LPLQSGSNGLNI-IEATHVLLVEPALNPAHEL-----QALGRVHRIGQTKPTHVYRFIIQ 1381

Query: 174  NTIDELVLQRLRTK 187
             T++  +   L+ K
Sbjct: 1382 GTVESRMYTLLKGK 1395


>gi|315652132|ref|ZP_07905130.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485624|gb|EFU76008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 1191

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 51  VHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQGRTLD------------ 95
           + D K   L  I+ +        IIV   F   L  L+K   +                 
Sbjct: 679 IDDPKFMRLLEIVNQKQKEDNNRIIVFSSFRHTLGYLKKNLKKHGIRVGQVDGSVPDEER 738

Query: 96  ---KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    +    +  I +L         GL+ Q+  + ++ + L W+    +Q I RI 
Sbjct: 739 FNLRKRFLLDRNEKDAIDVLLFS-EVGCEGLDYQF-CDSMINYDLPWNPMRIEQRIGRID 796

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +      V +Y +I ++TID ++  R  +K  + +  +  
Sbjct: 797 R----RGQKSDTVKIYNMITEDTIDAVIYDRCLSKIGVFEESIGD 837


>gi|194867550|ref|XP_001972094.1| GG15331 [Drosophila erecta]
 gi|190653877|gb|EDV51120.1| GG15331 [Drosophila erecta]
          Length = 1272

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              +       ++ +  I        II+   + + L  + +A        ++ CT +++ 
Sbjct: 1103 GDFSTKISSIVELVLKIKGDNEMEKIIIFSQWQAILIEIARALSLNGIRFRNKCTNKDFE 1162

Query: 106  EGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + K P+     L    +    GLNL      +       +  +  Q I RI      + G
Sbjct: 1163 DFKNPVSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPSDEHQAIGRI-----HRFG 1216

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
             K+   V+  I   T++E +L           L T   ++++ L++LKK
Sbjct: 1217 QKKPTKVHRFIVNGTVEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1265


>gi|115474249|ref|NP_001060723.1| Os07g0692600 [Oryza sativa Japonica Group]
 gi|113612259|dbj|BAF22637.1| Os07g0692600 [Oryza sativa Japonica Group]
          Length = 475

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
               + ++N    GK  +L A   +C  G++L  G + LV     W+  +      R  +
Sbjct: 340 RSDVMDKFNGDSAGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKT-----RQAI 393

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R  + G +R V+VY L+A  T +E      R K+ +  ++ 
Sbjct: 394 ARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVF 435


>gi|118403613|ref|NP_001072923.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|123908803|sp|Q0P4U8|SMAL1_XENTR RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|112418502|gb|AAI21898.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Xenopus (Silurana)
           tropicalis]
          Length = 942

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAF 88
           A+     +  +      ++ +  ++ ++     +V  H    L                 
Sbjct: 700 ALLLFYNRTAEAKIRSVLEYIMDLL-ESGREKFLVFAHHKLVLDHICEELGKKDVPYIRI 758

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               +         ++    K  +      +   GL L    +++VF  L+W+       
Sbjct: 759 DGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTL-SSADLVVFAELFWNPGVLI-- 815

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 816 ---QAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKV 855


>gi|291460281|ref|ZP_06599671.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417036|gb|EFE90755.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 1194

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 50  EVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAF---------------PQG 91
              D K   +  +I++        +I+   F   L+ L++                  + 
Sbjct: 681 PKDDPKFDRMLEVIQEKQTTDNNRVIIFSSFRHTLSYLREKLTAQGIRVGQVDGSVPDEE 740

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R   +    +   N   + +LF        GL+ Q+  + ++ + L W+    +Q I RI
Sbjct: 741 RYKLRQRFLLDRDNVNAVDVLFFS-EVGCEGLDYQF-CDTMINYDLPWNPMRIEQRIGRI 798

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                 +      V +Y +I Q TID ++  R  +K  + +  +  
Sbjct: 799 DR----RGQKSDTVKIYNMITQGTIDAVIYDRCLSKIGVFEASIGD 840


>gi|290986627|ref|XP_002676025.1| predicted protein [Naegleria gruberi]
 gi|284089625|gb|EFC43281.1| predicted protein [Naegleria gruberi]
          Length = 467

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 37/227 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +R++  +L  +    +    K     Q+ NG +  D +K + +    K++  + +I 
Sbjct: 240 RRLKRDVLTELPPKRRSKYYLHVKEEDLKQI-NG-IGGDSKKKFYQKDWGKLQKDKDVIA 297

Query: 65  KA--------------------NAAPIIVAYHFNS----------DLARLQKAFPQGRTL 94
           K                          ++  H             D+   +     G T 
Sbjct: 298 KYVKTAEAKIDGIRSYLRKIIPKKEKFLIFAHHRRVMDAIEETDDDVKTYEYIRIDGETK 357

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D++       +     +        G GLN     + +VF  L W+     Q  +R    
Sbjct: 358 DREGLAHHFRSTENCLVAILSMNVAGCGLNF-VPCSTVVFAELCWNPALLNQCEDRCHRI 416

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            Q+ A     V + YL+A+ T+D+ +   L  K+ I DL LN  K+E
Sbjct: 417 GQKGAF----VDITYLLAKKTLDDFMWDLLTKKADITDLALNGQKEE 459


>gi|218515260|ref|ZP_03512100.1| putative helicase/DNA methylase hybrid protein [Rhizobium etli
           8C-3]
          Length = 522

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + +    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 183 RSALVDYFRDEG-QIMIAT-EAGAEGINLQF-CSLVVNYDLPWNPQRVEQRIGRC----- 234

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   I  +N  D+ V Q L  K  + + +  A
Sbjct: 235 HRYGQKHDVVVVNFINRKNEADQRVYQLLSEKFRLFEGVFGA 276


>gi|150006233|ref|YP_001300977.1| putative ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934657|gb|ABR41355.1| putative ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
          Length = 921

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                ++    I+  N     ++ A  A+           NI+  + L W+    +Q I 
Sbjct: 507 NMDLQERQKALIKFKNN--AQVMIATDAAGESLN--MQFCNIVFNYDLPWNPMAIEQRIG 562

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           R+      + G K  V  Y ++  N++D  V + +  K    D +LN L
Sbjct: 563 RVD-----RIGQKHPVIAYNMLTNNSVDTRVYEIIVEKL---DAILNEL 603


>gi|116630085|ref|YP_815257.1| SNF2 family DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854119|ref|ZP_04644466.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
 gi|116095667|gb|ABJ60819.1| Superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           ATCC 33323]
 gi|238833195|gb|EEQ25485.1| superfamily II DNA/RNA helicase, SNF2 family [Lactobacillus gasseri
           202-4]
          Length = 630

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 21/165 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
           +   K +    +I+K  +    ++V   F   +                           
Sbjct: 445 IESPKFELGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPKQDRE 504

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI       
Sbjct: 505 GMINNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLSA 564

Query: 159 AGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             + R    YYL+ +        ID  V ++L+ K  +    ++ 
Sbjct: 565 DQYTR---YYYLMTKGDVAHTGFIDSTVYKKLKDKEKVMLDAIDG 606


>gi|289549357|ref|YP_003474345.1| helicase [Thermocrinis albus DSM 14484]
 gi|289182974|gb|ADC90218.1| helicase domain protein [Thermocrinis albus DSM 14484]
          Length = 1107

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 18/182 (9%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---- 83
           K  + +Q A   V  ++E    E+     K  E I +      I++       L      
Sbjct: 443 KLGELIQKAEKIVKSEKEVKLSELKTAIEKGFEEIRKMGGNPKILIFTESRDTLEYLVKK 502

Query: 84  ------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                          T+D+     + + + +  ++ A  A+   G+NLQ+  +I++ + +
Sbjct: 503 ISGWGYTVNYIHGDMTIDERIKEEKRFRD-ETQIMVATEAAG-EGINLQF-CHIMINYDI 559

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W+    +Q + RI      + G ++ V ++ L+A++TI+  VL +L  K       L +
Sbjct: 560 PWNPNRLEQRMGRI-----HRYGQQKDVHIFNLVAEDTIEGQVLVKLFEKLEEIKEKLGS 614

Query: 198 LK 199
            K
Sbjct: 615 DK 616


>gi|282598823|ref|YP_003359142.1| putative helicase [Clavibacter phage CMP1]
 gi|262212611|gb|ACY35947.1| putative helicase [Clavibacter phage CMP1]
          Length = 533

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 27/221 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG-----AVYYDEEKH---WKEVHD 53
           +   + + +    L+     A    +  ++  Q+            DE++      +   
Sbjct: 309 RMIKQMETDYIAWLEDNPTVAKLPVTARMRIRQMTLAVPSVIPATEDEKEEVYFDVDCES 368

Query: 54  EKIKALEVIIEKANAAPIIV---AYHFNSDLAR-------LQKAFPQGRTLDKDPCTIQE 103
             +  +E  ++      ++    +  F ++  R           +    +        ++
Sbjct: 369 PTLDDIEEWLKAHPDEKVLFLAQSQKFLAEATRRFKAKGYQAFEWSGMASEASRDVAKEQ 428

Query: 104 WNEGKIPLLFAHPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           +  G + L+F    S G G++ LQ   NIL       D        E     R  + G  
Sbjct: 429 FKNGSLQLVFGQVQSIGTGIDGLQSATNILWSLETGDDATT-----EIQAEGRLDRRGQV 483

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           R V     I   +IDE V+ +   K    +    +LK+E +
Sbjct: 484 RGVVHIKSIRAGSIDENVMGKQLEKRLAMNA---SLKRECV 521


>gi|298712291|emb|CBJ26742.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1307

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEW-NEGKIP 110
            I  K   +  +V   FNS L  L++  P+     +              +  +  +    
Sbjct: 1111 IHAKDPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTT 1170

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      S   G+NL    N+                +E+  + R  + G  R V V  L
Sbjct: 1171 VFLLSVRSGAVGINLTQANNVF------LLEPLLNLALEKQAIGRVYRLGQTRPVTVTKL 1224

Query: 171  IAQNTIDELVLQRLRT 186
            + +++I+  +L   + 
Sbjct: 1225 VLKDSIETRILALQKK 1240


>gi|46127691|ref|XP_388399.1| hypothetical protein FG08223.1 [Gibberella zeae PH-1]
          Length = 873

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +    G         N++      W+       IE   + R  + G  R V VY  I  
Sbjct: 760 INQYWRGWDSLTLTEANMVHIVEPQWNPT-----IEDQAIARVVRMGQTRPVTVYRYIMN 814

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
            ++++ VL+  + K+ I  L +  
Sbjct: 815 ESVEQSVLKLQQRKTQIIKLSMQD 838


>gi|300933400|ref|ZP_07148656.1| SNF2-related protein [Corynebacterium resistens DSM 45100]
          Length = 948

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + E+ E     L     +   G+NLQ+  ++LV + L W+ +  +Q I R    
Sbjct: 482 DRRKALVDEFRERGR--LMIATEAAAEGINLQF-CSMLVNYDLPWNPQRIEQRIGR---- 534

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  + +E +L+ L  K  +   +  A
Sbjct: 535 -AHRFGQKHNVVVVNFSNKGNLAEERILELLTEKFELFTSVFGA 577


>gi|242047042|ref|XP_002461267.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
 gi|241924644|gb|EER97788.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
          Length = 1205

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 97   DPCTIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N   EGK  +L A   +C  G++L  G + LV     W+  +      R  +
Sbjct: 1070 RSDVMDKFNSDREGKRKVLIASTTACAEGISLT-GASRLVMLDSEWNHSKT-----RQAI 1123

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             R  + G +R VFVY L+A  T +E      R K+ I  ++ 
Sbjct: 1124 ARAFRPGQERMVFVYLLVASGTWEEDKYNSNRRKAWIAKMVF 1165


>gi|24659216|ref|NP_648034.1| CG7376 [Drosophila melanogaster]
 gi|7295362|gb|AAF50680.1| CG7376 [Drosophila melanogaster]
          Length = 1270

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              +       ++ +  I  +     IIV   + + L  + +A        ++ CT ++++
Sbjct: 1101 GDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCTNKDFD 1160

Query: 106  E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +       +  L    +    GLNL      +       +  +     ER  + R  + G
Sbjct: 1161 DFKNPLSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGRIHRFG 1214

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
             KR   V+  I   TI+E +L           L T   ++++ L++LKK
Sbjct: 1215 QKRPTKVHRFIVNETIEENILSLITSADDTTTLSTHWDLENMTLDSLKK 1263


>gi|84616885|emb|CAJ13779.1| virulence associated protein [Desulfococcus multivorans]
          Length = 965

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    +EL  +L   ++ A      +  +           A    E+       +  I
Sbjct: 436 ELYDMDGQELLDELLKSHVSALQSEGSHVETLL--------DAAVRCEQAGPDAKAEALI 487

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + +  +  + N     +++   F      L++                 +++       +
Sbjct: 488 EWIYKLQAEENEPDLKVLIFTEFVPTQQMLKEFLEARGISVVTLNGSMAMEERGAAQDAF 547

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L     + G GLNLQ+  ++++ + + W+    +Q I R+      + G  + 
Sbjct: 548 RKSH-RVLV-STDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD-----RIGQPKT 599

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V     + +++++  V + L  K ++ 
Sbjct: 600 VQAINFVFEDSVEFRVREVLEQKLSVI 626


>gi|168051804|ref|XP_001778343.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670320|gb|EDQ56891.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 921

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 6/165 (3%)

Query: 3   QYHKF-QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            Y  F + +       +  +     +      +L N      +    +    E     + 
Sbjct: 475 LYRHFIRSKNVRQALEDQTKRAKVLASITALKKLCNHPKLIYD--TIRAGGSEAAGFGDC 532

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASC 119
           +        + +      +            ++ K    +  +N+             + 
Sbjct: 533 LKLFPPHLTLDLFAQICRERNYPFVRLDGTTSIGKRQKLVSRFNDPNQNEFAFLLSSKAG 592

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
           G GLNL  GGN LV F   W+    +Q+ +R       Q    + 
Sbjct: 593 GCGLNL-IGGNRLVLFDPDWNPATDKQVFQRQMSKEGLQKVVDKE 636


>gi|116191603|ref|XP_001221614.1| hypothetical protein CHGG_05519 [Chaetomium globosum CBS 148.51]
 gi|88181432|gb|EAQ88900.1| hypothetical protein CHGG_05519 [Chaetomium globosum CBS 148.51]
          Length = 219

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             +   HGLNL    N  + F  WW               R  + G  + V    L+A  
Sbjct: 38  TKSCGAHGLNLTA-ANRAIVFDHWWHEGLEC-----QAFARIHRIGQTKTVHTIKLVAAG 91

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           ++DE +L     K     L +        HV
Sbjct: 92  SMDETILGMQARKRETIGLAVGDGTARPTHV 122


>gi|296111469|ref|YP_003621851.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
 gi|295833001|gb|ADG40882.1| helicase, SNF2 family [Leuconostoc kimchii IMSNU 11154]
          Length = 616

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 24/175 (13%)

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTL 94
             + +   K  A   +I K  A    +IV   F   +                       
Sbjct: 431 DVETMRTPKFDAGMSLIRKLVAEGKKVIVWGMFVGTMRKVQRELLESGIEANLVYGDTPK 490

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +     I  + +G +P+L ++PA+ G  ++L    +  V+F   ++L    Q  +RI   
Sbjct: 491 ESRVGLINNFRDGNVPVLISNPATLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRIHRL 550

Query: 155 RQRQAGFKRAVFVYYLIAQNT------IDELVLQRLRTKSTIQDLLLNALKKETI 203
                 + R    YYL+ +        ID+ V +RL+ K  I    LNA+  + +
Sbjct: 551 GLPDNQYTR---YYYLMTEGDHAHNGYIDQQVYERLKEKEIIM---LNAIDGDML 599


>gi|184155516|ref|YP_001843856.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|183226860|dbj|BAG27376.1| helicase [Lactobacillus fermentum IFO 3956]
 gi|299783290|gb|ADJ41288.1| Helicase [Lactobacillus fermentum CECT 5716]
          Length = 630

 Score = 59.0 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
           +   K +    +I+K  +    ++V   F   +                           
Sbjct: 445 IEAPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPKQDRE 504

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI       
Sbjct: 505 GMINNFRTGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPA 564

Query: 159 AGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             + R    YYL+ +        ID +V ++L+ K  +    ++ 
Sbjct: 565 NQYTR---YYYLMTKGDVAHMGFIDRIVYKKLKDKEKVMLDAIDG 606


>gi|115402311|ref|XP_001217232.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114189078|gb|EAU30778.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 752

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--KDPCTIQEWNEGKIPLLFAHPASCG 120
           I  +     +       +   L      G      +            IP+L     +  
Sbjct: 640 IVFSAWTKTLDILCMKLEELGLNHVRIDGDVSRLDRTRRLHDFQTSPSIPILLMTYGTGA 699

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            GLNL    N +      W+       +E   + R  + G  R V V   +A+ T++E
Sbjct: 700 VGLNLTA-ANRIHILEPQWNPS-----VEEQAIGRAVRLGQSREVTVVKYVAERTVEE 751


>gi|323140664|ref|ZP_08075586.1| putative phage head-tail adaptor [Phascolarctobacterium sp. YIT
           12067]
 gi|322414849|gb|EFY05646.1| putative phage head-tail adaptor [Phascolarctobacterium sp. YIT
           12067]
          Length = 1109

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 39/222 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE-------- 54
            Y             +++    +     K   ++        ++      D         
Sbjct: 732 AYESIVASAM----DKSVTTNTALEIIAKLRDISLFPDIGTIDERSISKEDAIKIFNSSA 787

Query: 55  --KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ------------GRTLDKDPCT 100
             K+   E++    N   I++          L+                     +     
Sbjct: 788 RLKVTFSELVNTYYNNEKILIFIESKKMQRILRTVIQDFFKIKVPIPINGDMRGEIRQSI 847

Query: 101 IQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
           +  +NE K   +L   P + G GLN+    N ++  S  W+  +     E     R  + 
Sbjct: 848 VDTFNESKGFGVLLLSPLAAGMGLNI-ASANHVIHLSRHWNPAK-----EDQATDRAYRI 901

Query: 160 GFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
           G  + V V   +A       ++ D  + + L  K  + +  L
Sbjct: 902 GQTKDVQVVIPMALHPVLRLDSFDNKLDELLEFKRQLSEEAL 943


>gi|330795379|ref|XP_003285751.1| hypothetical protein DICPUDRAFT_97160 [Dictyostelium purpureum]
 gi|325084299|gb|EGC37730.1| hypothetical protein DICPUDRAFT_97160 [Dictyostelium purpureum]
          Length = 1743

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               Q      I +L         GLNL      +       +       +E   + R  +
Sbjct: 1632 AINQFRKNPNINVLLLPIQRGASGLNL-IEATHVFIVEPILNPS-----VEAQAINRVHR 1685

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             G  +  FV+  I +NTI+E V Q  + K    D  L + K +
Sbjct: 1686 FGQSKETFVHRFIIKNTIEEKVAQMNKKKEKELDWKLASNKND 1728


>gi|299741193|ref|XP_001834290.2| hypothetical protein CC1G_11203 [Coprinopsis cinerea okayama7#130]
 gi|298404599|gb|EAU87531.2| hypothetical protein CC1G_11203 [Coprinopsis cinerea okayama7#130]
          Length = 1028

 Score = 58.6 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 42/174 (24%), Gaps = 11/174 (6%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
           A N        ++L+N                ++       +   +    +         
Sbjct: 563 AANVFKYMSILIKLSNHLGLILPGSPRDSAEQQERNRELAQLAFPDGNVPMYGKVIIDPR 622

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC---GHGLNLQYGGNILVFFSLW 138
              +                    +    +L    +         +LQ            
Sbjct: 623 YCGKWQALNILLKQWRA-------DPTNKVLIFTKSVRLLEMLEYHLQTQNYGFCKLDGS 675

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               EH    +   + R  + G  R V VY L+   +++EL+  R   K  +  
Sbjct: 676 TKQSEH-PAHDLQAMDRSYRFGQTRDVSVYRLLGAGSVEELIYARQIYKQQLMA 728


>gi|73748049|ref|YP_307288.1| helicase [Dehalococcoides sp. CBDB1]
 gi|73659765|emb|CAI82372.1| putative helicase (Snf2 family) [Dehalococcoides sp. CBDB1]
          Length = 1033

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 24/158 (15%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKA----------FPQ 90
           E+ +  E  D K++AL+ +I          I++   F   LA + K              
Sbjct: 508 EKANSLETFDPKLEALKKVIRDKLTLPNNKIMLFSSFRHTLAYIYKNLIAEGYRVGLVHG 567

Query: 91  GRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           G   ++       +      E  I +L         GL+ Q+  + ++ + L W+    +
Sbjct: 568 GTPDEERENIRDRFQLTGQDEKVIDVLLFS-EIGCEGLDYQF-CDCMINYDLPWNPMRIE 625

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q I RI    Q+       V ++ ++   TID  + +R
Sbjct: 626 QRIGRIDRNGQK----SETVAIFNMVTPGTIDAEIYER 659


>gi|320449563|ref|YP_004201659.1| type III restriction enzyme subunit res [Thermus scotoductus SA-01]
 gi|320149732|gb|ADW21110.1| type III restriction enzyme, subunit res [Thermus scotoductus
           SA-01]
          Length = 1189

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
             R       G   ++     + + ++ ++ +L A  A+   G+NLQ   +++V + L W
Sbjct: 552 RPRAVVWIHGGMGREERSKAQEAFLHDPEVQVLVATDAAG-EGINLQR-AHLMVNYDLPW 609

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +    +Q   RI      + G      ++ L+A  T +  V   L  K       L  
Sbjct: 610 NPNRLEQRFGRI-----HRIGQTEPCHMWNLVAIETREGDVYHTLLRKLEEARKALGG 662


>gi|313895499|ref|ZP_07829055.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975625|gb|EFR41084.1| conserved domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 91

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                A+ G G+ L     ++ FFS+ + +   +         R  +   K      Y++
Sbjct: 2   FVGQIAAAGLGITLIAAATMV-FFSMDYSMSNFE-----QAKARIHRVSQKENCHYIYIV 55

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           A  T+D  VL+ LR K+ +  LL++  +K
Sbjct: 56  AAGTVDRKVLKALRDKADLAKLLVDDYRK 84


>gi|241855293|ref|XP_002416013.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215510227|gb|EEC19680.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 675

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 14/196 (7%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           +K   K  + +  ++Q E+I+             +          +     +  +     
Sbjct: 445 IKTTDKVLQHMAKEMQNESIQGMQRRGVLLTYFRETGLHKCKAICKYLEDLLESD----- 499

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--QEWNEGKIPLLFAHPA 117
           +  +  A+   +I A     D          G+T  +    +  +        +      
Sbjct: 500 QKFLCFAHHQMVIDAVCELLDKKSCSHIRIDGKTSPELRKMLCDKFQYNDMCKVAVLSIT 559

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   G+ L    +++VF  L+W+              R  + G +  V V YL+A+ T D
Sbjct: 560 AANAGITL-SSASLVVFAELFWNPGILT-----QAEDRVHRIGQQNCVMVQYLVAKGTAD 613

Query: 178 ELVLQRLRTKSTIQDL 193
           + +   +R K      
Sbjct: 614 DYIWPLVRNKLDTLSK 629


>gi|76162997|gb|AAX30749.2| SJCHGC07413 protein [Schistosoma japonicum]
          Length = 70

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I +        G G+NL    N ++ +   W+        +     R  + G  R V +
Sbjct: 4   DIFVFLLTTRVGGLGVNLTS-ANRVLIYDPDWNPTT-----DLQARERAWRIGQSRDVVI 57

Query: 168 YYLIAQNTI 176
           Y L+   T+
Sbjct: 58  YRLLTSGTV 66


>gi|325982657|ref|YP_004295059.1| helicase domain-containing protein [Nitrosomonas sp. AL212]
 gi|325532176|gb|ADZ26897.1| helicase domain protein [Nitrosomonas sp. AL212]
          Length = 934

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + ++   +I ++             + G G+NLQ   +I+V F L W+     Q +
Sbjct: 559 HGSMSHEERAASIDQFETTGQ--FLVSTEAGGEGINLQRNCHIIVNFDLPWNPMRLVQRV 616

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            R+      + G KR V V+ + A  T+D  ++Q L  +  I  ++L+
Sbjct: 617 GRL-----YRYGQKRKVIVFNMHAPQTLDADIMQMLYFR--ISQVVLD 657


>gi|78190717|gb|ABB29680.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Leucosolenia sp. AR-2003]
          Length = 375

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 53/169 (31%), Gaps = 32/169 (18%)

Query: 6   KFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY--------DEEKHW 48
           K QR  Y  +  ++I+  N           +  ++  +  N    +              
Sbjct: 208 KMQRAWYTKILMKDIDVVNGAGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDQH 267

Query: 49  KEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDK 96
              +  K+  L+ ++   K   + +++       +  ++  F                + 
Sbjct: 268 IVDNSGKLCLLDKLLVRLKEQGSRVLIFSQMTRMMDIMEDYFMWRGHNYCRLDGSTPHED 327

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              +I E+N       +      + G G+NL    ++++ F   W+ + 
Sbjct: 328 RQVSINEFNMPNSEKFVFMLSTRAGGLGINL-ATADVVILFDSDWNPQV 375


>gi|317038672|ref|XP_001401946.2| SNF2 family helicase [Aspergillus niger CBS 513.88]
          Length = 1203

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPL 111
             E  K  ++II   N             L    + +            +  + E + + +
Sbjct: 899  SELHKTEKIIIFYDNNNAAFWIAEGLELLGVDFRIYASTLKPTMRAEYLALFRESEEVRV 958

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGL++    + +   +        Q  +E   + R  + G  R VFV  L+
Sbjct: 959  LLMDLRQASHGLHI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQTRPVFVETLV 1012

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++T+++ +L+R   +  + D  ++  +++ + 
Sbjct: 1013 LKDTLEDKMLKR---RKAMTDSEIHHAERDLLD 1042


>gi|134074551|emb|CAK38844.1| unnamed protein product [Aspergillus niger]
          Length = 1237

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPL 111
             E  K  ++II   N             L    + +            +  + E + + +
Sbjct: 933  SELHKTEKIIIFYDNNNAAFWIAEGLELLGVDFRIYASTLKPTMRAEYLALFRESEEVRV 992

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGL++    + +   +        Q  +E   + R  + G  R VFV  L+
Sbjct: 993  LLMDLRQASHGLHI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQTRPVFVETLV 1046

Query: 172  AQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             ++T+++ +L+R   +  + D  ++  +++ + 
Sbjct: 1047 LKDTLEDKMLKR---RKAMTDSEIHHAERDLLD 1076


>gi|328849920|gb|EGF99092.1| hypothetical protein MELLADRAFT_94926 [Melampsora larici-populina
           98AG31]
          Length = 203

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
            Y   +   K+V   K    + +I       +               +     T  +   
Sbjct: 34  AYLVSQLQNKQVPLHKGLCKKTVIYTQWRCFMEWIKIGLDCHGIESGSLHGEMTPQERTL 93

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  N   I        + G GLN+    + +      W+ +  Q       +    Q
Sbjct: 94  QLNRFQNNNNIEAFIVSIEAGGVGLNMT-CADEVYLMDAHWNPQIVQ-----QAIDHLHQ 147

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQR 183
            G    V VY+++A  ++++ +   
Sbjct: 148 IGQTHPVKVYHVVAGGSVEQHLFNV 172


>gi|146329165|ref|YP_001209106.1| DEAD helicase domain-containing protein VrlO [Dichelobacter nodosus
           VCS1703A]
 gi|2317808|gb|AAC33384.1| putative DEAH ATP-dependent helicase [Dichelobacter nodosus]
 gi|146232635|gb|ABQ13613.1| DEAD helicase domain protein VrlO [Dichelobacter nodosus VCS1703A]
          Length = 965

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    +EL  +L   ++ A      +  +           A    E+       +  I
Sbjct: 436 ELYDMDGQELLDELLKSHVSALQSEGSHVETLL--------DAAVRCEQAGPDAKAEALI 487

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + +  +  + N     +++   F      L++                 +++       +
Sbjct: 488 EWIYKLQAEENEPDLKVLIFTEFVPTQQMLKEFLEARGISVVTLNGSMAMEERGAAQDAF 547

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L     + G GLNLQ+  ++++ + + W+    +Q I R+      + G  + 
Sbjct: 548 RKSH-RVLV-STDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD-----RIGQPKT 599

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V     + +++++  V + L  K ++ 
Sbjct: 600 VQAINFVFEDSVEFRVREVLEQKLSVI 626


>gi|150389915|ref|YP_001319964.1| helicase domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149949777|gb|ABR48305.1| helicase domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 856

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II       I+              +        +    ++ + E K+ +L  +P +   
Sbjct: 694 IIWCIFIDSILKLSSELQSKGLRVGSIYGSIEPKERELILKLFKEKKLDVLITNPHTLAE 753

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY-LIAQN----TI 176
            ++L    +  +++   ++L    Q  +RI         + +  ++    + ++    ++
Sbjct: 754 SVSLHSACHNAIYYEYSYNLVHLLQSKDRIHRLGLPDNQYTQYYYLQNEFLTRDNEVFSL 813

Query: 177 DELVLQRLRTKSTIQDLLLNALKKETIH 204
           D+ + +RL  K  I    +   K E ++
Sbjct: 814 DKKIYERLHEKERIMLQAIENNKLEQLN 841


>gi|108762887|ref|YP_632846.1| helicase/SNF2 domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108466767|gb|ABF91952.1| helicase/SNF2 domain protein [Myxococcus xanthus DK 1622]
          Length = 907

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T +     ++E+   +  +L     +   GLNLQ+  N++V + L W+ +  +Q I R  
Sbjct: 477 TPEDRRALVEEFR-HRTQILICT-EAGAEGLNLQF-CNLVVNYDLPWNPQRVEQRIGRC- 532

Query: 153 VTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                + G +R V V   + + N  D  + + L  K  + D +  A
Sbjct: 533 ----HRYGQQRDVLVINFLNRMNAADARLFELLEKKLNLFDGVFGA 574


>gi|257067735|ref|YP_003153990.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
 gi|256558553|gb|ACU84400.1| DNA/RNA helicase, superfamily II, SNF2 family [Brachybacterium
           faecium DSM 4810]
          Length = 961

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +  + E     +     +   G+NLQ+  ++LV + L W+ +  +Q I R+   
Sbjct: 492 DRRKALVDYFREQGT--IMIATEAAAEGINLQF-CSMLVNYDLPWNPQRVEQRIGRV--- 545

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V     +  I ++ +L+ L  K  +   +  A
Sbjct: 546 --HRFGQKHNVVVVNFSNKGNIAEQRILELLTNKFQLFSSVFGA 587


>gi|210610634|ref|ZP_03288534.1| hypothetical protein CLONEX_00724 [Clostridium nexile DSM 1787]
 gi|210152356|gb|EEA83362.1| hypothetical protein CLONEX_00724 [Clostridium nexile DSM 1787]
          Length = 560

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  K      +   G++ +L       G G N+Q     L      W   + +Q
Sbjct: 150 FIHEAGTETKKAELFAKVRSGQVRVLLGSTPKLGAGTNIQDRLIALHHLDCPWKPADLEQ 209

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 210 QEGRILR----QGNQNKKVKIFRYVTENTFDAYMWQILENKQKFISQIMTS 256


>gi|300112788|ref|YP_003759363.1| helicase domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299538725|gb|ADJ27042.1| helicase domain protein [Nitrosococcus watsonii C-113]
          Length = 966

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    +EL  +L   ++ A      +  +           A    E+       +  I
Sbjct: 437 ELYDMDGQELLDELLKSHVSALQSEGSHVETLL--------DAAVRCEQAGPDAKAEALI 488

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + +  +  + N     +++   F      L++                 +++       +
Sbjct: 489 EWIYELQAEENEPDLKVLIFTEFVPTQQMLKEFLEARGISVVTLNGSMDMEERKQAQDAF 548

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L     + G GLNLQ+  ++++ + + W+    +Q I R+      + G  + 
Sbjct: 549 RKSH-RVLV-STDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD-----RIGQPKM 600

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V     + +++++  V + L  K ++ 
Sbjct: 601 VRAISFVFEDSVEFRVREVLEQKLSVI 627


>gi|284053201|ref|ZP_06383411.1| helicase-like protein [Arthrospira platensis str. Paraca]
          Length = 1044

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                + +G+I LL     S   GLNLQ  G +L+ + L W+    +Q I R+    QR 
Sbjct: 800 KIKNLFRQGEIQLLLCT-ESASEGLNLQTCG-VLINYDLPWNPMRVEQRIGRVDRIGQR- 856

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 V ++ L    T++  V +RLR +  +   ++  L+
Sbjct: 857 ---YPTVKIHNLYYDGTVEAKVYRRLRERIGLFTNVVGNLQ 894


>gi|146095356|ref|XP_001467556.1| helicase  [Leishmania infantum JPCM5]
 gi|134071921|emb|CAM70616.1| helicase-like protein [Leishmania infantum JPCM5]
          Length = 908

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + L      + G GLNL  G + ++     ++        +   V R  + G +  V
Sbjct: 739 QPGVFLFLISTRAGGTGLNLT-GADTVILLDGDFNP-----HNDLQAVDRCHRIGQRNPV 792

Query: 166 FVYYLIAQNTID-ELVLQRLRTKSTIQDLLLN 196
            +Y L++ +T++ E     +  K  ++ L+L 
Sbjct: 793 ALYRLVSPHTVEDERHSGIVDRKLKLEHLVLG 824


>gi|121607110|ref|YP_994917.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121551750|gb|ABM55899.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 443

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 7/112 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K     +   +    +L    A+   G+NLQ+   IL  F L W+  + +Q I R
Sbjct: 23  GDHGAKVAAERRFRQKDGPRVLICT-AAGREGINLQF-ARILFNFDLPWNPMDVEQRIGR 80

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G      VY  +  +TI+  +   L  K       +  +    
Sbjct: 81  I-----HRYGQNHTAQVYNFVLSDTIEGRIFLMLDEKLVEIARTVGKVDDRG 127


>gi|291568725|dbj|BAI90997.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1044

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                + +G+I LL     S   GLNLQ  G +L+ + L W+    +Q I R+    QR 
Sbjct: 800 KIKNLFRQGEIQLLLCT-ESASEGLNLQTCG-VLINYDLPWNPMRVEQRIGRVDRIGQR- 856

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 V ++ L    T++  V +RLR +  +   ++  L+
Sbjct: 857 ---YPTVKIHNLYYDGTVEAKVYRRLRERIGLFTNVVGNLQ 894


>gi|261417435|ref|YP_003251118.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373891|gb|ACX76636.1| SNF2-related protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326640|gb|ADL25841.1| SNF2/helicase/endonuclease domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 1045

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 35/213 (16%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIE 64
                +        +   +     ++++      ++     V        K+ A   I+E
Sbjct: 671 RYVAAINLGIKTHAHPFERIQSLRKISDHPYLDFKDVDHLSVDDLIRSSAKLSATMRILE 730

Query: 65  KA--NAAPIIVAYHFNSDLARLQKA------------------FPQGRTLDKDPCTIQEW 104
                   +I+           Q+                     +G  + +        
Sbjct: 731 DIRAKNEKVIIFTDRRDMQRMFQRILLQKFGIEASVINGDTSTSDRGNKVSRQKTVDIFQ 790

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    ++     + G GLN   G N ++ +S  W+  +           R  + G  + 
Sbjct: 791 EKSGFNVIIMSQLAAGVGLN-VVGANHVIHYSRHWNPAKEM-----QATDRVYRIGQTKD 844

Query: 165 VFVYYLIAQ----NTIDELVLQRLRTKSTIQDL 193
           V+V++ +A     ++ D ++   L+ K+ +   
Sbjct: 845 VYVHFPMAVCDNFDSFDVVLDALLQNKTHLASA 877


>gi|224054730|ref|XP_002191300.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1
           [Taeniopygia guttata]
          Length = 963

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 19/164 (11%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKA 87
           G + Y       ++H   ++ +  ++E  N    +V  H    L                
Sbjct: 720 GLLVYFSRTAEAKIHS-VVEYILELLESGNN-KFLVFAHHKIMLDAVAAELKKKHIEHIR 777

Query: 88  FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +  +     Q++    K  +      +   GL L    +++VF  L+W+      
Sbjct: 778 IDGSTSSAERQSLCQKFQLAEKHAVAVLSLTAANMGLTLCA-ADLVVFAELFWNPGILI- 835

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                   R  + G   +V V+YL+A+ T D+ +   ++ K  +
Sbjct: 836 ----QAEDRAHRIGQTSSVNVHYLVAKGTADDYLWPMIQEKIKV 875


>gi|195161250|ref|XP_002021481.1| GL26533 [Drosophila persimilis]
 gi|194103281|gb|EDW25324.1| GL26533 [Drosophila persimilis]
          Length = 747

 Score = 58.6 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
              +   Q R+  +        N+    +      +C  G+ L     ++VF  L W+  
Sbjct: 553 HHIRIDGQTRSDLRADMVSAFQNKSSCRVAVLSLKACNAGITLTA-AELIVFAELDWNPS 611

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                      +R  + G  + V   YL+A  T D+ + + L  K  +   +
Sbjct: 612 TL-----AQAESRAHRIGQTKTVICRYLLANETADDTIWKMLINKQKVLSKV 658


>gi|256378169|ref|YP_003101829.1| helicase domain protein [Actinosynnema mirum DSM 43827]
 gi|255922472|gb|ACU37983.1| helicase domain protein [Actinosynnema mirum DSM 43827]
          Length = 1131

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    +     +E+       +L A  A+   GLNLQ   +++V + L W+    +Q 
Sbjct: 531 HGGVNRFRRREITEEFTANPACRVLLATDAAG-EGLNLQA-AHMVVNYDLPWNPNRIEQR 588

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+      + G      ++ L+A  T +  V   L  K   Q  
Sbjct: 589 FGRV-----HRIGQTEVCRLWNLVAVGTREGEVFATLLRKVEEQRK 629


>gi|303241443|ref|ZP_07327946.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302591052|gb|EFL60797.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 2215

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     +    G++ +L    +  G G N+Q     +      W   + +Q
Sbjct: 1841 FVHDAKTDEQRETLFERVRAGEVRILLGSTSKLGTGTNVQNKLIAVHHLDCPWRPSDIEQ 1900

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      V ++  + + T D  + Q    K      ++
Sbjct: 1901 RDGRILR----QGNENPVVNIFRYVTKGTFDAYLWQIQEQKLKYISQVM 1945


>gi|330797634|ref|XP_003286864.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
 gi|325083166|gb|EGC36626.1| hypothetical protein DICPUDRAFT_31594 [Dictyostelium purpureum]
          Length = 534

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +++       +  K  +      + G GL L      ++F  L W              
Sbjct: 441 QNRNELVNHFQSNPKCRIAVLSITAAGTGLTLTA-ATCVIFAELLWTPGVLF-----QAE 494

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R  + G   +V V YLI   T+DE +   + +K  +
Sbjct: 495 DRAHRYGQTSSVLVQYLIGMGTVDESIWNLVESKKNL 531


>gi|154340832|ref|XP_001566369.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063692|emb|CAM39877.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1591

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            C  +  +     +L     + G G+ L    +  +   + W+  +     +     R  
Sbjct: 550 RCIAELQSNDACRVLLCSVRAGGVGIKLTA-ASHCILLDVSWNPTD-----DVQATYRLY 603

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + G  R V VY L    T + +V      ++ +Q  + +
Sbjct: 604 RYGQLRPVNVYRLATWGTSEHVVFAYALQRAWLQKKIAD 642


>gi|115391319|ref|XP_001213164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194088|gb|EAU35788.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1339

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 21/201 (10%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              F++ L+  L  E+  A                A          ++H E     ++II 
Sbjct: 896  KTFKKNLFKTLPQESPLAQTKLVA-------TASAKLTYLLDQVDQLHKE----EKIIIF 944

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGL 123
              N             L    + +            ++ + E   + +L        HGL
Sbjct: 945  YDNNNSAYWIAEGLELLGIDFRIYANTLKPALRTAYLKLFRESEDVRVLLMDLRQASHGL 1004

Query: 124  NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            ++    + +   +        Q  +E   + R  + G +R VFV  L+ ++T+++ +   
Sbjct: 1005 HI-ANASRVFIVNP-----IWQPNVESQAIKRAHRIGQRRPVFVETLVLKDTLEDKM--- 1055

Query: 184  LRTKSTIQDLLLNALKKETIH 204
            L  +  + D+ +   +K+ + 
Sbjct: 1056 LTRRKAMSDMEIQRAEKDLLD 1076


>gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 2992

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L      W   +  Q
Sbjct: 2608 FIHEANTEVRKKELFSKVRTGQVRVLLGSTQKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2667

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2668 RKGRIER----QGNQNETVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2714


>gi|241601346|ref|XP_002405286.1| smarca4, putative [Ixodes scapularis]
 gi|215502512|gb|EEC12006.1| smarca4, putative [Ixodes scapularis]
          Length = 483

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 17/156 (10%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
             K + L+ I+ K       +++     + +  ++              T    + G  P
Sbjct: 115 SGKFELLDRILPKLRCKGHRVLLFCQMTTLMTIMEDYLTY------RGATFPFADAGCRP 168

Query: 111 LLFAHPASCGHGLN---LQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGF 161
                            L   G  L+  S+             +   +     R  + G 
Sbjct: 169 RCLGGRLEDRRKHRYFVLTSRGLQLLLLSVPSSDSVLCLPASAKLCCDLQAQDRAHRIGQ 228

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           K  V V  L+  N+++E +L   + K  + + ++ A
Sbjct: 229 KNEVRVLRLVTVNSVEERILAAAKYKLNLDEKVIQA 264


>gi|328542136|ref|YP_004302245.1| Prophage LambdaMc01, helicase, SNF2 family [Polymorphum gilvum
           SL003B-26A1]
 gi|326411886|gb|ADZ68949.1| Prophage LambdaMc01, helicase, SNF2 family [Polymorphum gilvum
           SL003B-26A1]
          Length = 922

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G          + +     P +    A+   G+NLQ+   IL  F L W+  + +Q I R
Sbjct: 553 GGDHGAKAAAERRFKLKDGPRVLVCTAAGREGINLQF-ARILFNFDLPWNPMDMEQRIGR 611

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G      VY L+  +TI+  +   L  K T     L  +  + 
Sbjct: 612 I-----HRYGQAHTAQVYNLVLSDTIEGRIFLLLDDKLTEIARTLGKVDDQG 658


>gi|322500668|emb|CBZ35745.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1581

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            C  +  +     +L     + G G+ L    +  +   + W+  +     +     R  
Sbjct: 547 RCISELQSNDTCRVLLCSVRAGGVGIKLTA-ASHCILLDVSWNPTD-----DVQATYRLY 600

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
           + G  R V +Y L    T + +V      +S +Q  +  ++  +++  H
Sbjct: 601 RYGQLRPVNIYRLATWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|294676842|ref|YP_003577457.1| SNF2 family helicase [Rhodobacter capsulatus SB 1003]
 gi|294475662|gb|ADE85050.1| helicase, SNF2 family [Rhodobacter capsulatus SB 1003]
          Length = 412

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 38/220 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-DEKIKALE 60
           + Y          L      A  +         ++            + +    ++ A  
Sbjct: 148 QVYDA----ARLQLASGTPGA--ALKLLHHIRTVSVRPALGSLSADAEFIAASARLAATF 201

Query: 61  VIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLDK------------DPCTIQEWNE 106
            I+ +        +V         R  +       LD+                +  +  
Sbjct: 202 DILRQIRAKGERALVFIEHRQMQYRFIEIARAEFGLDRIDLINGETPIAQRQQIVNRFQA 261

Query: 107 -----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                G   LL   P + G GL L      ++  S WW+    +Q  +R+      + G 
Sbjct: 262 HLEQGGGFDLLVLGPKAAGTGLTLTA-ATHVIHLSRWWNPAAEEQCNDRV-----HRLGQ 315

Query: 162 KRAVFVYYLIA------QNTIDELVLQRLRTKSTIQDLLL 195
            R V ++  +A       ++ D L+   ++ K  +    L
Sbjct: 316 TRPVQIHVPMAIHPGYRAHSFDCLLHSLMQRKRRMASAAL 355


>gi|224001070|ref|XP_002290207.1| Hypothetical protein THAPSDRAFT_262487 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973629|gb|EED91959.1| Hypothetical protein THAPSDRAFT_262487 [Thalassiosira pseudonana
           CCMP1335]
          Length = 466

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            +F     R  +         +    +    +  + +      + G  + L    + + F
Sbjct: 354 SNFVGSNTRFIRIDGATNPKTRQEQILTFQTDPTVRIAMLGITAAGVAVTLTA-SSTVWF 412

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             L+W        I      R  + G +  V   Y +A++T+DE++ + +  K
Sbjct: 413 AELFWTPA-----IMIQAEDRCHRIGQQARVRCLYFVAKSTLDEVLWKLIEKK 460


>gi|58265946|ref|XP_570129.1| hypothetical protein CND04260 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226362|gb|AAW42822.1| hypothetical protein CND04260 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1112

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----------DEKIKALEVIIEK--ANA 68
           A +  +  ++  ++         E    ++              K++ L++++ K  A  
Sbjct: 7   AKSVRNILMELRKVCQHPYLSAPELEIFDLPLEEQHRQLLNASGKLQFLKLLLPKLIARG 66

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL---LFAHPASCGHGLNL 125
             I++    +     L      G        +I   +     +    F        G   
Sbjct: 67  HRILLFSQISYMAKMLSTCALTGIPSKHKGKSIWTNSMRLTQIIIYFFLQQELGAWGSIW 126

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                   F++              I  +R  + G ++ V V+ L+ + +++E ++ + +
Sbjct: 127 --PPQTQSFYTTPIS--------ILIRTSRAYRYGQEKRVLVFKLMIKGSVEETIINKGK 176

Query: 186 TKSTIQDLLLNALKKET 202
            K  +  L++  + KET
Sbjct: 177 RKMVLDHLVVQQMGKET 193


>gi|238506885|ref|XP_002384644.1| helicase, putative [Aspergillus flavus NRRL3357]
 gi|220689357|gb|EED45708.1| helicase, putative [Aspergillus flavus NRRL3357]
          Length = 602

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++    +  +E ++ +L A   + G GL++    N  +   LWW+    Q        
Sbjct: 471 QAREQSMDKFRDEKEVRILIASLKAGGIGLDM-SMANKCILVDLWWNEAIQQ-----QAF 524

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  + V    +I +++IDE +L+    K+      +  
Sbjct: 525 CRLYRIGQSKDVEFVKIIIKDSIDEYLLKMQTRKTANISGTMGD 568


>gi|67678171|gb|AAH96935.1| Wu:fd12d03 protein [Danio rerio]
          Length = 479

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + ++ +   W+        +    +R  + G  + V +Y  + + +++E + Q  + K 
Sbjct: 2   ADTVIIYGSDWNP-----HNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKM 56

Query: 189 TIQDLLL 195
            +  L++
Sbjct: 57  MLTHLVV 63


>gi|88811243|ref|ZP_01126499.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
 gi|88791782|gb|EAR22893.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
          Length = 940

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 35/200 (17%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            + QG + +A        K  Q  N                        +I         
Sbjct: 455 TEHQGTDAKAETLLELIYKLQQEENDPQLKV------------------LIFTEFVPTQA 496

Query: 73  VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +   F             G  LD      Q +      +L     + G GLNLQ+  +++
Sbjct: 497 MLAEFLESRGFSIALLNGGMDLDARTRAQQVF-SRDARVLI-STDAGGEGLNLQF-CHVI 553

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI-- 190
           V F + W+    +Q I R+      + G    V     + ++T++  V + L  K ++  
Sbjct: 554 VNFDMPWNPMRLEQRIGRVD-----RIGQPHVVRAINFVLEDTVEHRVREVLGEKLSVIA 608

Query: 191 -------QDLLLNALKKETI 203
                     ++++ + E I
Sbjct: 609 QEFGVDKAADVMDSAEVEPI 628


>gi|306836192|ref|ZP_07469176.1| helicase [Corynebacterium accolens ATCC 49726]
 gi|304567913|gb|EFM43494.1| helicase [Corynebacterium accolens ATCC 49726]
          Length = 997

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + D+    +  + E     +     +   G+NLQ+  ++L+ + L W+ +  +Q I RI
Sbjct: 525 PSADRRKALVDYFRESGS--IMIATEAASEGINLQF-CSMLINYDLPWNPQRVEQRIGRI 581

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
                 + G K  V +     +    +  +L+ L  K  + D +  A
Sbjct: 582 -----HRYGQKHDVVIVNFFNEGNAAEARILELLENKFHLFDSVFGA 623


>gi|326526795|dbj|BAK00786.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 949

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 93  TLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + ++      ++N      +LF    +CG G++L  G + +V   +  +         R 
Sbjct: 810 SQEERELATDQFNNSADAKVLFGSIRACGEGISL-VGASRVVILDVHLNPSVT-----RQ 863

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + R  + G ++ VFVY L+A ++ +E   Q    K  I
Sbjct: 864 AIGRAFRPGQQKKVFVYRLVAADSQEESFHQTAFKKEVI 902


>gi|195337877|ref|XP_002035552.1| GM14768 [Drosophila sechellia]
 gi|194128645|gb|EDW50688.1| GM14768 [Drosophila sechellia]
          Length = 1208

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 24/174 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             K        KI ++  ++ K         IIV   + + L  + +A        ++ CT
Sbjct: 1034 HKSIIGDFSTKIASIVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCT 1093

Query: 101  IQEWNE-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +++++       +  L    +    GLNL      +       +  +     ER  + R
Sbjct: 1094 NKDFDDFKNPYSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGR 1147

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRT---------KSTIQDLLLNALKK 200
              + G KR   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1148 IHRFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLGTHWDLENMTLDSLKK 1201


>gi|312901374|ref|ZP_07760654.1| protein, SNF2 family [Enterococcus faecalis TX0470]
 gi|311291537|gb|EFQ70093.1| protein, SNF2 family [Enterococcus faecalis TX0470]
          Length = 404

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-----IQEWNEGKIPLLFAHP 116
           ++ +   + II+ Y++  ++  L++        + +         Q W   K  + F   
Sbjct: 258 MLCEGTESNIIIFYYYQKEIEALKEKIKNKTFFEVNGKHSNLPPKQSWKSLKNSVTFVQY 317

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +   G+ LQY  N ++F++  +  +++        + R  + G  + V VY  I Q TI
Sbjct: 318 MAGSAGIELQY-ANTVIFYTPTYSYQDYS-----QALGRAYRNGQTKKVTVYRFITQQTI 371

Query: 177 DELVLQRLRTKSTIQDLL 194
           ++ V Q L  K    + L
Sbjct: 372 EQAVYQALENKEDFSEEL 389


>gi|307209215|gb|EFN86322.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Harpegnathos
           saltator]
          Length = 670

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           S   +  +   +  +  +     +               +   G+ L    +++VF  L+
Sbjct: 482 SMNIQYIRIDGKTTSEQRKYQIDKFQEHDDYLAAVLSITAANAGITLTA-AHLVVFTELF 540

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           W+     Q  +R+      + G    V + YL+A++T D+ +   ++ K  I + +
Sbjct: 541 WNPGILCQAEDRV-----HRIGQNDNVIIQYLVAKDTADDYMWPLIKKKMDILNAV 591


>gi|320592310|gb|EFX04749.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 1567

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
            I+   +             L      + +G T ++    ++ +N   +  +L    +   
Sbjct: 1358 IVFYDSENVAFYLAEHLEMLQVHHLIYARGITAERRAQYVETFNGNARFRVLLMDLSQAA 1417

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GL++    + + F     + +     +E   + R R+   +R V V  L+ +++++EL+
Sbjct: 1418 FGLDM-RSASRIYFIGPVLNPQ-----VEAQAIGRVRRISQQRQVSVETLVLRDSVEELI 1471

Query: 181  LQRLRT 186
            ++R R+
Sbjct: 1472 VERRRS 1477


>gi|254425780|ref|ZP_05039497.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196188203|gb|EDX83168.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1117

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 88  FPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           F  G   ++       +N       + +L A   +   G+NLQ     L  F + W+   
Sbjct: 595 FHGGIGDERREQVKAAFNADPAAHPLRILIAT-DAAREGVNLQNYCANLFHFDVPWNPSR 653

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +Q   RI    Q+       V  YY +     ++ VL  L  K+      L +L
Sbjct: 654 MEQRNGRIDRKLQKADL----VRCYYFVYSQRAEDRVLDVLVQKTKRIQEELGSL 704


>gi|257893695|ref|ZP_05673348.1| helicase [Enterococcus faecium 1,231,408]
 gi|257830074|gb|EEV56681.1| helicase [Enterococcus faecium 1,231,408]
          Length = 620

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 25/171 (14%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCT 100
             K KA   +I+K  +     IV   F            +L     +     ++D+    
Sbjct: 440 SSKTKATIELIKKLVSENKKTIVWCIFISSIELLENKCEELGLSAISIYGETSMDERLKL 499

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           I+E+ +G+  +L  +P +    ++L    +  +++   ++L    Q  +RI         
Sbjct: 500 IKEFQKGQYDILITNPHTLAESVSLHQVCHDAIYYEYSFNLVHLLQSKDRIHRLG---LA 556

Query: 161 FKRAVFVYYLIAQN-------TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +    YY+ ++        ++D+ +  RL  K  I    L+A+  + + 
Sbjct: 557 DNQYTQYYYMQSKYIYNEQVYSLDDRIYHRLMEKEKIM---LDAIDHDILE 604


>gi|134058188|emb|CAK38380.1| unnamed protein product [Aspergillus niger]
          Length = 961

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 11/162 (6%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
                    + + DEK    + +I         ++A     +    ++   +     +  
Sbjct: 718 ALLRNITKSRSISDEKGVQTKFVIFSYWTKMLDLIATALTENHLTFRRIDGRSSLSQRKE 777

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 ++ +  ++ A   + G G++L    N +      W+      M E   + R  +
Sbjct: 778 ALGVFGSDPQCIIMLASIGAAGEGIDLTA-ANSIHIVEPQWNP-----MAEAQAIDRVHR 831

Query: 159 AGFKRAVFVYYLIAQNTID----ELVLQRLRTKSTIQDLLLN 196
            G +R V V   I   +I+    + V      K  + +  L+
Sbjct: 832 IGQERDVEVVRYITSESIESEAIQYVQWIQSDKLRLINKALS 873


>gi|146092861|ref|XP_001466542.1| hypothetical protein [Leishmania infantum]
 gi|134070905|emb|CAM69581.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1581

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            C  +  +     +L     + G G+ L    +  +   + W+  +     +     R  
Sbjct: 547 RCISELQSNDACRVLLCSVRAGGVGIKLTA-ASHCILLDVSWNPTD-----DVQATYRLY 600

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
           + G  R V +Y L    T + +V      +S +Q  +  ++  +++  H
Sbjct: 601 RYGQLRPVNIYRLATWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|328862456|gb|EGG11557.1| hypothetical protein MELLADRAFT_91139 [Melampsora larici-populina
           98AG31]
          Length = 152

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +T  +     +  N  KI        + G GLN+    + +      W+ +  QQ I+R
Sbjct: 18  MKTQQRTWQLTRFQNNIKIEAFIVSIEAGGVGLNMT-CADEVYLMDAHWNPQIVQQAIDR 76

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +      Q G    V VY+++A  ++++ +    + ++++   ++
Sbjct: 77  L-----HQIGQTHPVKVYHVVAGESVEQHLFNVQKKEASLARKVI 116


>gi|258567350|ref|XP_002584419.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905865|gb|EEP80266.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1216

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I  + N     VA          +      +   K        N  ++ +L        H
Sbjct: 937  IFYENNNNAFWVAEGLEILGVEFRIYASTLKPNLKSEYLSMFNNSEEVRVLLMDLRQASH 996

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL+     + +   +  WD       IE   + R  +    R V+V  L+ +NT+++ +L
Sbjct: 997  GLH-VASASRIFIINPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLRNTLEDKML 1050

Query: 182  QRLRTKSTIQDLLLNALKKETIH 204
            +R   +  + +  +   +++ + 
Sbjct: 1051 RR---RKQMSNAEMQHAERDLLD 1070


>gi|168206971|ref|ZP_02632976.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
 gi|170661641|gb|EDT14324.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
            JGS1987]
          Length = 1975

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 4/112 (3%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +   +      +   G   ++       G G N+Q     L      +   + +
Sbjct: 1619 CFIHDAKNEIQREKIFSDMRNGNKRIIIGSTQKMGTGTNIQDRLVSLHHLDCPYRPADLE 1678

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   RI      Q    + V +Y    +NT D  + Q +  K      ++ +
Sbjct: 1679 QREGRIIR----QGNMNKEVNIYRYATKNTFDSYLWQIVEQKQKFISQVMTS 1726


>gi|313902234|ref|ZP_07835641.1| helicase domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467514|gb|EFR63021.1| helicase domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 1205

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 28/202 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L+ E        +  ++  Q          ++ W+E+         +   + +  
Sbjct: 478 QTIAELRAEIETLKELEALALRVRQ-------SGTDRKWEELSKILQDREVMFDARGHRR 530

Query: 70  PIIVAYHFNSDLARLQKAFPQ--------------GRTLDKDPCTIQEWNEGKIPLLFAH 115
            +++          L                        ++         +  + +L A 
Sbjct: 531 KLVIFTEHRDTARYLAWRIQTLLGRPEAVVVIEGTMGREERRKAQELFTQDPNVHVLVAT 590

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            A+   G+NLQ   +++V + L W+    +Q   RI      + G      ++ L+AQNT
Sbjct: 591 DAAG-EGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAQNT 643

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
            +  V   L  K   +   L  
Sbjct: 644 REGEVYLALLRKLEAEQRALGG 665


>gi|171060838|ref|YP_001793187.1| helicase domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778283|gb|ACB36422.1| helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 947

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            RT D     ++ + +    ++ A   +   G+NLQ+  ++++ + L W+ +  +Q I R
Sbjct: 478 SRTADTRAALVEHFRDSA-QIMIAT-EAGAEGINLQF-CSLVINYDLPWNPQRIEQRIGR 534

Query: 151 IGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G +  V V   I   N  D+ V + L  K  + + +  A
Sbjct: 535 C-----HRYGQQHDVVVVNFIDLSNPADQRVYELLAQKFQLFEGVFGA 577


>gi|219883019|ref|YP_002478183.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
 gi|219862025|gb|ACL42366.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
          Length = 762

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K      +   G+I ++F    + G G+ L    + + F    W           
Sbjct: 605 GVAQHKRQAVADKLQNGEIGVIFCSIGAAGFGITLTASSDTI-FIETDWTPANIS----- 658

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R  + G      V  L+A NT+D  +   LR K+   D+++
Sbjct: 659 QAEDRNNRIGQLNTCMVTTLLATNTLDAHMRAILRNKAKDLDVMM 703


>gi|317145894|ref|XP_003189752.1| hypothetical protein AOR_1_1066144 [Aspergillus oryzae RIB40]
          Length = 181

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
           Q+        ++       +     +  II   +   +   + F +D             
Sbjct: 8   QILKQFNQASKQLERVFFPNAGWPYVSDII---SHYIVGYLFGFKNDFLDFCVLCLCMFA 64

Query: 94  LDKDPCTIQE-WNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             ++   ++E +  G     L       G G+NLQ  G++++   +WW++       ER 
Sbjct: 65  RHRNESAVREEFTNGTSSAPLLVTAGCGGTGINLQS-GSVIIQMEVWWNMNH-----ERQ 118

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNALKKE 201
              R  + G  + V VY L A+N+ ID ++ +    K  +   ++  L ++
Sbjct: 119 AYARCLRQGQDKMVKVYKLFAENSNIDIMISKCQVRKDKLNSQVMKPLVRK 169


>gi|195437364|ref|XP_002066610.1| GK24475 [Drosophila willistoni]
 gi|194162695|gb|EDW77596.1| GK24475 [Drosophila willistoni]
          Length = 734

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           S L             D     ++ + +     +      +C  G+ L     +++F  L
Sbjct: 543 STLKVHYIRIDGSTRSDLRADFVETFQKKSSCQVAVLSLKACNSGITLTA-AEMIIFAEL 601

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            W+             +R  + G  + V   YL+A  T D+ +   L+ K  +   +
Sbjct: 602 DWNPSTL-----AQAESRAHRIGQTKPVICRYLMAHQTADDTIWNMLKAKQDVLSKV 653


>gi|147773526|emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]
          Length = 1187

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 93   TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + ++   +++ +N      + F    +CG G++L  G + ++   +  +         R 
Sbjct: 991  SSEQREWSMERFNTSPDARVFFGSIKACGEGISL-VGASRVLILDVHLNPSVT-----RQ 1044

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G K+ V VY L+A ++ +E        K  I  +
Sbjct: 1045 AIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKM 1086


>gi|198465924|ref|XP_001353822.2| GA20306 [Drosophila pseudoobscura pseudoobscura]
 gi|198150371|gb|EAL29557.2| GA20306 [Drosophila pseudoobscura pseudoobscura]
          Length = 1259

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
             +V     K        KI  +  +I       N A I++   + + L ++  A    R 
Sbjct: 1080 HSVRPGVAKTMVGSFSTKITCIVQLILKITADDNQAKILIFSQWQAILEQISIALRLNRI 1139

Query: 94   LDKD--PCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            + +      + E+   ++ +  L    +    GLNL      +       +  +     E
Sbjct: 1140 VFRKCSNMDLDEFKSTEMNVTCLLMALSRGSKGLNL-IEATHVFLVEPILNPGD-----E 1193

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR----TK-----STIQDLLLNALKK 200
            R  + R  + G  +A  V+  I   TI+E +L  +     +K       +++L L++LKK
Sbjct: 1194 RQAIGRIHRFGQTKATTVHRFIVNGTIEENILSLISSADDSKTLGTHWDLENLTLDSLKK 1253


>gi|152982150|ref|YP_001354424.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151282227|gb|ABR90637.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 1173

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 87  AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G   ++     + + N+    +L A  A+   G+NLQ   N++V + L W+    +
Sbjct: 536 MIHGGIKREERRKVQELFRNDPATRVLLATDAAG-EGVNLQN-ANLMVNYDLPWNPNRLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   RI      + G      ++ ++A  T +  V QRL  K  ++   L  
Sbjct: 594 QRFGRI-----HRIGQTEVCHLWNMVAAETREGDVFQRLFEKLEVEREALGG 640


>gi|261199876|ref|XP_002626339.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239594547|gb|EEQ77128.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1214

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
            +  ++II                 L    + +            +  +NE   + +L   
Sbjct: 935  EQEKIIIFYEGNNTGFYIAEGLEILGVEFRIYANTLKTQTRSEYLSLFNETETVRVLLMD 994

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 HGL++    + +   +  WD       IE   + R  +    + V+V  L+ + T
Sbjct: 995  LRQASHGLHI-ACASRVFIVNPIWDP-----NIESQAIKRAHRISQTKPVYVETLVLKGT 1048

Query: 176  IDELVLQRLRTKSTIQDLLLNALK 199
            +++ +L+R   K      L +A K
Sbjct: 1049 LEDRMLRR--RKQMSTAELRHAEK 1070


>gi|323933991|gb|EGB30458.1| hypothetical protein ERCG_04599 [Escherichia coli E1520]
          Length = 952

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHW-----------KEVHDEKIKALEVIIE 64
           +G+ I   +  ++  K  ++   A+  +  K             K     K       + 
Sbjct: 425 EGKQIIFTDEKTQHQKLKRIICNALNLEPSKVRILNAQTVAEAGKTGKKLKAVKPPKELP 484

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                  I  Y+    L     A     +L        ++ EG+ P++  +      G+N
Sbjct: 485 DEPTDAQIAKYNEQMALYDAYIAQQNEMSLGGLEKIAADFQEGRTPIIICN-KKAEVGIN 543

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L  G   +   +L W      Q   R       +A     V V+Y   + + DE  L+ L
Sbjct: 544 LHRGTTDIHHLTLPWTPASVAQRNGRGARVGSNRAS----VRVHYYCGKGSFDEYRLKTL 599

Query: 185 RTKSTIQDLLLNALKKET 202
           + K+     +L + K E 
Sbjct: 600 KRKAGWISDILRSDKSEM 617


>gi|323447772|gb|EGB03682.1| hypothetical protein AURANDRAFT_8383 [Aureococcus anophagefferens]
          Length = 88

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 96  KDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    ++ +     +  +      +   G+NL    N +V F   W+       I+R  +
Sbjct: 18  ERQKMVEAFEADGARARVFLLSTKAGNMGINLVA-ANRVVLFDACWNPA-----IDRQAL 71

Query: 154 TRQRQAGFKRAVFVYYL 170
            R  + G  + V++Y L
Sbjct: 72  FRCFRYGQTKHVYIYRL 88


>gi|327350451|gb|EGE79308.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1214

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 17/153 (11%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
            +  ++II                 L+   + +            +  +NE   + +L   
Sbjct: 935  EQEKIIIFYEGNNTGFYIAEGLEILSVEFRIYANTLKTQTRSEYLSLFNETETVRVLLMD 994

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 HGL++    + +   +  WD       IE   + R  +    + V+V  L+ + T
Sbjct: 995  LRQASHGLHI-ACASRVFIVNPIWDP-----NIESQAIKRAHRISQTKPVYVETLVLKGT 1048

Query: 176  IDELVLQRLRT----------KSTIQDLLLNAL 198
            +++ +L+R +           K  + D  ++++
Sbjct: 1049 LEDRMLRRRKQMSTTELRHAEKDPLDDQTMSSI 1081


>gi|16197925|gb|AAL13727.1| LD03886p [Drosophila melanogaster]
          Length = 558

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
             +       ++ +  I  +     IIV   + + L  + +A        ++ CT ++++
Sbjct: 389 GDFSTKISSVVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCTNKDFD 448

Query: 106 E-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +       +  L    +    GLNL      +       +  +     ER  + R  + G
Sbjct: 449 DFKNPLSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGRIHRFG 502

Query: 161 FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
            KR   V+  I   TI+E +L           L T   ++++ L++LKK
Sbjct: 503 QKRPTKVHRFIVNETIEENILSLITSADDTTTLSTHWDLENMTLDSLKK 551


>gi|260905079|ref|ZP_05913401.1| helicase, putative [Brevibacterium linens BL2]
          Length = 1009

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 58/220 (26%), Gaps = 39/220 (17%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK-HWKEVHDEKIKALEV 61
            Y +        L+        +     K   ++       E    W      +I  +  
Sbjct: 780 AYDQV-------LESHRPRKGGALETIQKLRSVSLHPATVPEFGASWSAAESARINGMIE 832

Query: 62  IIEK--ANAAPIIVA----------YHFNSDLARLQKAFPQGRT----------LDKDPC 99
           ++++        I+             +  +   +      G T                
Sbjct: 833 VLDEIREADEKAIIFVISKTVQTRLAVWLHERYGITPKIVNGETKAVASGSKKANLTRKG 892

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I ++       L               G N  +     W+  +     E     R  + 
Sbjct: 893 IITDFEAQSGFNLIIMSPLAVGVGLTVVGANHAIHLERHWNPAK-----EAQATDRIYRI 947

Query: 160 GFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           G  R V VY  +A +    + D  +   LR+K+ ++D ++
Sbjct: 948 GQTRPVHVYLPLANHPTLSSFDVNLDALLRSKTDLKDAVV 987


>gi|170592285|ref|XP_001900899.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
 gi|158591594|gb|EDP30199.1| Helicase conserved C-terminal domain containing protein [Brugia
           malayi]
          Length = 741

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR 92
             + +   Y    K    +     + +  +I    A   +          R  +      
Sbjct: 558 RYIIDHYFYDGAPKKKVLIF-AHHQVVLDMISIDVAKKGL----------RSIRIDGTTA 606

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           +  +D           + +      + G G+ L    +++VF  L W+         +  
Sbjct: 607 SRLRDEQCRLFQENDDVMVAVLSITAAGIGVTLTA-ASVVVFAELHWNPGTL-----KQA 660

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             R  + G K +VFV YLIA+ T D+++   ++ K  +
Sbjct: 661 EDRAHRLGQKDSVFVQYLIAKGTADDILWPLIQKKLDV 698


>gi|145477881|ref|XP_001424963.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392030|emb|CAK57565.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1215

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 17/172 (9%)

Query: 42   YDEEKHWKEVHDEKIK--ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-------- 91
            ++E +  +     K++    E  + K     +++   +   +  L+  F           
Sbjct: 1035 FEELQSLQFGLSSKLEAVIKETKVIKQKKEKVLIFTQWIEMIGLLENQFKDSGIIAYRIT 1094

Query: 92   --RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
               T+DK    I+ + E +                     + +     WW+       IE
Sbjct: 1095 GSMTVDKREKIIKNFKEQQDVTALILSLRATSTGLNLTMASNVFLVDPWWNPA-----IE 1149

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               + R  + G +  V V   + +NTI++ +    + K       L+  +++
Sbjct: 1150 DQAIGRADRIGQQNQVKVVRFLCRNTIEQQINLLHQKKKFYIKRALSNNQQK 1201


>gi|330824390|ref|YP_004387693.1| SNF2-like protein [Alicycliphilus denitrificans K601]
 gi|329309762|gb|AEB84177.1| SNF2-related protein [Alicycliphilus denitrificans K601]
          Length = 959

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E    ++ A   +   G+NLQ+  ++
Sbjct: 468 QAIYKDWLKRHEGTDRITGSKTADTRAALVEHFKERG-KVMIAT-EAGAEGINLQF-CSL 524

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   + + N  D  V + L  K  +
Sbjct: 525 VINYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYELLSQKFQL 579

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 580 FEGVFGA 586


>gi|10803646|ref|NP_046044.1| hypothetical protein VNG7099 [Halobacterium sp. NRC-1]
 gi|16120089|ref|NP_395677.1| ATP-dependent RNA helicase [Halobacterium sp. NRC-1]
 gi|169237287|ref|YP_001690493.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|169237330|ref|YP_001690535.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|2822377|gb|AAC82883.1| unknown [Halobacterium sp. NRC-1]
 gi|10584193|gb|AAG20812.1| ATP-dependent RNA helicase [Halobacterium sp. NRC-1]
 gi|167728353|emb|CAP15157.1| ATP-dependent helicase [Halobacterium salinarum R1]
 gi|167728846|emb|CAP15738.1| ATP-dependent helicase [Halobacterium salinarum R1]
          Length = 979

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 24/204 (11%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           E   +     +       +  +  QL        +            + ++ I+ +    
Sbjct: 429 EAALETVTVTLNQSQIQEELDRVKQL----WRQAKSIETDSKAQMLKQFVDRILTEDPDE 484

Query: 70  PIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASC 119
            I++   +   L  L+                    +        NE  I        + 
Sbjct: 485 KILIFTEYTDTLEYLRDRVFAEYDIAQVYGDLDQDRRRQEMADFENEKNI---MIATDAA 541

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             GLNLQ+  +I+  F L W      Q + R+      + G +R V +  L  ++T +  
Sbjct: 542 QEGLNLQF-AHIMANFDLPWSPTRIDQRMGRL-----HRYGQERTVEIRNLFFKDTRESE 595

Query: 180 VLQRLRTKSTIQDLLLNALKKETI 203
           +L  L  K+   +  L  ++ + +
Sbjct: 596 ILNLLVEKTDQIESDLG-MRSDVL 618


>gi|195588190|ref|XP_002083841.1| GD13945 [Drosophila simulans]
 gi|194195850|gb|EDX09426.1| GD13945 [Drosophila simulans]
          Length = 1270

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 24/174 (13%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
             K        KI ++  ++ K         IIV   + + L  + +A        ++ CT
Sbjct: 1096 HKSIIGDFSTKIASIVELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNKCT 1155

Query: 101  IQEWNE-----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
             +++++       +  L    +    GLNL      +       +  +     ER  + R
Sbjct: 1156 NKDFDDFKNPYSNVTCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGD-----ERQAIGR 1209

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRT---------KSTIQDLLLNALKK 200
              + G KR   V+  I   T++E +L  + +            ++++ L++LKK
Sbjct: 1210 IHRFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLGTHWDLENMTLDSLKK 1263


>gi|227544299|ref|ZP_03974348.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|300909489|ref|ZP_07126950.1| SNF2 family helicase [Lactobacillus reuteri SD2112]
 gi|227185707|gb|EEI65778.1| possible helicase [Lactobacillus reuteri CF48-3A]
 gi|300893354|gb|EFK86713.1| SNF2 family helicase [Lactobacillus reuteri SD2112]
          Length = 373

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 21/165 (12%)

Query: 51  VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDP 98
           +   K +    +I+K  +    ++V   F   +                           
Sbjct: 188 IEAPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGATPKQDRE 247

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I  +  G   +L ++P + G  ++L    +  V+F   ++L    Q  +RI       
Sbjct: 248 GMINNFRIGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPA 307

Query: 159 AGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             + R    YYL+ +        ID  V ++L+ K  +    ++ 
Sbjct: 308 NQYTR---YYYLMTKGDVAHMGFIDNTVYKKLKDKERVMLDAIDG 349


>gi|121609717|ref|YP_997524.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121554357|gb|ABM58506.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 906

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G   +      + +             + G G+NLQ   N++V + L W+    +Q
Sbjct: 265 MIHGGVKREDRRKVQELFRNDPSARFLVATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQ 323

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      + G      ++ ++A  T +  V QRL  K  ++   L  
Sbjct: 324 RFGRI-----HRIGQTEVCHLWNMVAAETREGDVFQRLFEKLEVERQALGG 369


>gi|15613532|ref|NP_241835.1| SNF2 helicase [Bacillus halodurans C-125]
 gi|10173584|dbj|BAB04688.1| SNF2 helicase [Bacillus halodurans C-125]
          Length = 577

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 28/182 (15%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           GE I A + A + +K L+          +   + +   + +    ++ +           
Sbjct: 357 GERITAPSKAIELLKLLK----------QSDEQAIVYSEYRVTIDLLSELLEEHDFTVTT 406

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +               +  +   +I+ +   +  +  +   S G GLNLQ+    L+ F 
Sbjct: 407 Y-----------HGRLSSREKQQSIERFKNKEAQVFISS-ESGGQGLNLQF-CRRLINFD 453

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L W+    +Q I R+      + G    V +Y +  +  IDE +L  L +K  + ++++ 
Sbjct: 454 LPWNPMRIEQRIGRV-----HRFGQVNDVEIYTMPTKGAIDEYLLYTLTSKVNLFEVVIG 508

Query: 197 AL 198
            L
Sbjct: 509 EL 510


>gi|256073537|ref|XP_002573086.1| harp (smarcal1)-related [Schistosoma mansoni]
 gi|238658258|emb|CAZ29318.1| harp (smarcal1)-related [Schistosoma mansoni]
          Length = 695

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 21/174 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR---------LQKAFPQGRT 93
            +++ E    K+ A+E  +          ++  H    L           ++     GRT
Sbjct: 456 FEYFHETGSVKLPAIEQYVLDLIECGHKFLLFAHHTDVLDSLDKLLSEKSIRFIRIDGRT 515

Query: 94  LDKDPCTIQ--EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             +    +      E    +      + G GL+L    N+++F  L+W+           
Sbjct: 516 NSEQRSVVCQIFQKEDDCRVALLSITAAGTGLHLTA-ANLVIFAELFWNPGALV-----Q 569

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              R  + G   +V + YLIA+ T D+ +   +  K  +       L +ET  +
Sbjct: 570 AEDRAYRIGQMDSVLIRYLIAEQTADDFIWPLVERKLDVLSKA--GLNRETFRM 621


>gi|304320770|ref|YP_003854413.1| putative ATP-dependent RNA helicase [Parvularcula bermudensis
           HTCC2503]
 gi|303299672|gb|ADM09271.1| possible ATP-dependent RNA helicase [Parvularcula bermudensis
           HTCC2503]
          Length = 1173

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G + ++    I  + + +  ++     + G G+NLQ  G+++V + L W+  + +Q  
Sbjct: 547 HGGVSREERRKVISRFMQDRELMVLVANDAAGEGVNLQR-GHLMVNYDLPWNPNKIEQRF 605

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            RI      + G      ++ L+A NT +  V  RL  K        +ALK     V
Sbjct: 606 GRI-----HRIGQTEVCHLWNLVAANTREGQVYGRLLEKLETAR---SALKGRVYDV 654


>gi|297824995|ref|XP_002880380.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326219|gb|EFH56639.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 800

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                     +     G + ++       +  N  +  + F    +CG G++L  G + +
Sbjct: 643 SSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSPEAKVFFGSIKACGEGISL-VGASRV 701

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +   +  +    Q       V R  + G KR V+ Y L+A  + +E   +    K  +  
Sbjct: 702 LILDVHLNPSVTQ-----QAVARAYRPGQKRKVYAYKLVAAESPEEENYETCTRKEMMSK 756

Query: 193 L 193
           +
Sbjct: 757 M 757


>gi|148671572|gb|EDL03519.1| SNF2 histone linker PHD RING helicase, isoform CRA_a [Mus musculus]
          Length = 1646

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             I+ + 
Sbjct: 1469 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQ 1528

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    +  I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1529 ENLSAFKYDPHINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1582

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1583 RIGQTKPTIVHRFLIKATIEERMQAMLK 1610


>gi|241202956|ref|YP_002974052.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856846|gb|ACS54513.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1170

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   D+       +  +  + +L A  A+   G+NLQ   N++V + L W+    +Q 
Sbjct: 533 HGGTHRDERRRLQALFRSDPDVRVLVATDAAG-EGVNLQN-ANLMVNYDLPWNPNRLEQR 590

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 591 FGRI-----HRIGQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|225434275|ref|XP_002275596.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 944

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 23/191 (12%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y K   E+   L              +   Q A              V  + +  L  + 
Sbjct: 733 YQKKMDEILEQLDVREGVKVKFFLNVLALCQSA---------GEKLLVFSQYLLPLRFL- 782

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122
            +     +              +      + ++   +++ +N      + F    +CG G
Sbjct: 783 -EKLTMKVNGWSSGKEIFVISGE-----SSSEQREWSMERFNTSPDARVFFGSIKACGEG 836

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           ++L  G + ++   +  +         R  + R  + G K+ V VY L+A ++ +E    
Sbjct: 837 ISL-VGASRVLILDVHLNPSVT-----RQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHN 890

Query: 183 RLRTKSTIQDL 193
               K  I  +
Sbjct: 891 TCFKKELISKM 901


>gi|329569081|gb|EGG50874.1| helicase protein [Enterococcus faecalis TX1467]
          Length = 2266

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +     ++  +G+I +L       G G N+Q     +    + W   +  Q
Sbjct: 1893 FIHSAKNDRQREELFEKVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQ 1952

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1953 RDGRIVR----QGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|239607939|gb|EEQ84926.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 1214

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAH 115
            +  ++II                 L    + +            +  +NE   + +L   
Sbjct: 935  EQEKIIIFYEGNNTGFYIAEGLEILGVEFRIYANTLKTQTRSEYLSLFNETETVRVLLMD 994

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 HGL++    + +   +  WD       IE   + R  +    + V+V  L+ + T
Sbjct: 995  LRQASHGLHI-ACASRVFIVNPIWDP-----NIESQAIKRAHRISQTKPVYVETLVLKGT 1048

Query: 176  IDELVLQRLRT----------KSTIQDLLLNAL 198
            +++ +L+R +           K  + D  ++++
Sbjct: 1049 LEDRMLRRRKQMSTTELRHAEKDPLDDQTMSSI 1081


>gi|148671575|gb|EDL03522.1| SNF2 histone linker PHD RING helicase, isoform CRA_d [Mus musculus]
          Length = 1638

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             I+ + 
Sbjct: 1461 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQ 1520

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    +  I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1521 ENLSAFKYDPHINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1574

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1575 RIGQTKPTIVHRFLIKATIEERMQAMLK 1602


>gi|147676740|ref|YP_001210955.1| hypothetical protein PTH_0405 [Pelotomaculum thermopropionicum SI]
 gi|146272837|dbj|BAF58586.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 82

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ + LWW+       +E     R  + G  R V V+ LI+  T +E +   + +K  + 
Sbjct: 1   MIHYDLWWNPA-----VEDQATDRTYRIGQTRTVMVHRLISLGTFEEKINTMMASKRELA 55

Query: 192 DLLLNALK 199
            L + A +
Sbjct: 56  GLTVAAGE 63


>gi|118150662|ref|NP_001071175.1| E3 ubiquitin-protein ligase SHPRH isoform a [Mus musculus]
 gi|81894566|sp|Q7TPQ3|SHPRH_MOUSE RecName: Full=E3 ubiquitin-protein ligase SHPRH; AltName: Full=SNF2,
            histone-linker, PHD and RING finger domain-containing
            helicase
 gi|32822862|gb|AAH55003.1| SNF2 histone linker PHD RING helicase [Mus musculus]
          Length = 1674

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             I+ + 
Sbjct: 1497 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQ 1556

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    +  I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1557 ENLSAFKYDPHINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1610

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1611 RIGQTKPTIVHRFLIKATIEERMQAMLK 1638


>gi|76153117|gb|AAX24778.2| SJCHGC03308 protein [Schistosoma japonicum]
          Length = 213

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           + G  + V VY LI +NT++  +L+R   K  +Q +++ + + 
Sbjct: 1   RLGQTKPVTVYRLICKNTVEGRMLRRAEEKRAMQQMVIQSGQA 43


>gi|315446141|ref|YP_004079020.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
 gi|315264444|gb|ADU01186.1| DNA/RNA helicase, superfamily II, SNF2 family [Mycobacterium sp.
           Spyr1]
          Length = 965

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+         E    +L A  A+   G+NLQ   +++V + + W+    +Q   RI   
Sbjct: 532 DRRRAQANFITEPSSSVLIATDAAG-EGVNLQ-VAHLMVNYDVPWNPNRLEQRFGRI--- 586

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G +    ++ L+A +T +  V + L  K  +Q   L  
Sbjct: 587 --HRIGQRHTCHLWNLVAADTREGDVFRTLLEKVEVQREALGD 627


>gi|317028687|ref|XP_001390499.2| hypothetical protein ANI_1_1528034 [Aspergillus niger CBS 513.88]
          Length = 906

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 11/162 (6%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
                    + + DEK    + +I         ++A     +    ++   +     +  
Sbjct: 729 ALLRNITKSRSISDEKGVQTKFVIFSYWTKMLDLIATALTENHLTFRRIDGRSSLSQRKE 788

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 ++ +  ++ A   + G G++L    N +      W+      M E   + R  +
Sbjct: 789 ALGVFGSDPQCIIMLASIGAAGEGIDLTA-ANSIHIVEPQWNP-----MAEAQAIDRVHR 842

Query: 159 AGFKRAVFVYYLIAQNTID----ELVLQRLRTKSTIQDLLLN 196
            G +R V V   I   +I+    + V      K  + +  L+
Sbjct: 843 IGQERDVEVVRYITSESIESEAIQYVQWIQSDKLRLINKALS 884


>gi|310831392|ref|YP_003970035.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386576|gb|ADO67436.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 816

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 95  DKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +    I+ +          ++     +   G +L    N ++F       ++    IE 
Sbjct: 722 FQRNKAIETFRGLRMNQSSKVIMLSLKNAASGTHL-VEANHIIFVDPVDSTKDSVIDIEN 780

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
             + R  + G K+ V+++ L+ ++TI+E + 
Sbjct: 781 QAIARAFRIGQKKKVYIHRLLIKDTIEENIY 811


>gi|312863051|ref|ZP_07723289.1| helicase C-terminal domain protein [Streptococcus vestibularis
           F0396]
 gi|311100587|gb|EFQ58792.1| helicase C-terminal domain protein [Streptococcus vestibularis
           F0396]
          Length = 931

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 559 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 618

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 619 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 665


>gi|256004417|ref|ZP_05429397.1| helicase domain protein [Clostridium thermocellum DSM 2360]
 gi|255991558|gb|EEU01660.1| helicase domain protein [Clostridium thermocellum DSM 2360]
 gi|316941350|gb|ADU75384.1| SNF2-related protein [Clostridium thermocellum DSM 1313]
          Length = 889

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 18/154 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKDPCTIQEWN 105
            + ++ +  +     II+   F +          D            ++++    + E+ 
Sbjct: 461 FEIIDDLFAEDRQRKIIIFTEFVATQSYLVKLLKDRGYSTSILNGSMSIEERNAVLHEFK 520

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                 +     + G GLNLQ+  N ++ + L W+  + +Q I R+      + G +R V
Sbjct: 521 TQTD--ILISTDAGGEGLNLQF-SNCIINYDLPWNPMKIEQRIGRVD-----RIGQQRDV 572

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            VY  I  +T++  V   L  K ++    +   K
Sbjct: 573 VVYNFILADTVENRVKTVLEEKLSVILREIGIDK 606


>gi|194752217|ref|XP_001958419.1| GF23531 [Drosophila ananassae]
 gi|190625701|gb|EDV41225.1| GF23531 [Drosophila ananassae]
          Length = 1272

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 20/169 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
              +       ++ +  I        I++   + + L ++ KA        +  C  Q++ 
Sbjct: 1102 GDFSTKISNIVEQVLKIRSANADEKILIFSQWQAILFQISKALALNNVKFRSKCIEQDFA 1161

Query: 106  EG-----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            +       I  L    +    GLNL      +       +  + +Q I RI      + G
Sbjct: 1162 DFKNPDLNITCLLMPLSKGSKGLNL-IEATHVFLVEPILNPGDEKQAIGRI-----HRFG 1215

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
              +   V+  I   TI+E +L           L T   ++++ L  LK+
Sbjct: 1216 QTKPTKVHRFIVNGTIEENILSLITSADDTKTLSTHWDLENMTLEGLKQ 1264


>gi|327354368|gb|EGE83225.1| DNA repair helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 350

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 61  VIIEKANAAPIIVAYHFNSD---LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               + +   +++   F      L+ + +    G+++ +D        +    +L     
Sbjct: 74  DWFRRFSRTKVVIFTQFLGMASILSSMCQKNGWGQSVARDKHIRTFSKDPAARILICSLR 133

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G++L      ++ FS                  R  +   +R V    ++ QN+ID
Sbjct: 134 TAGIGVDLTATNKCILAFS------------------RIFRIRQQRNVEFVRIVVQNSID 175

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           + +      K+   + ++ +
Sbjct: 176 DRIQLIQNEKTDGIEQVIGS 195


>gi|310796546|gb|EFQ32007.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1262

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             T  ++    +  N  ++ +L     + G  LNL   GN ++   LWW+    Q      
Sbjct: 1092 NTEQRNKAVSEFQNGEEVKVLIVSLRAGGQCLNL-ERGNRVILMELWWNHAVEQ-----Q 1145

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G  +       + +  I+  +L+    K    D  L  
Sbjct: 1146 AFARVFRIGQSKETHFLRFVVKTPIENRMLEMQVGKILAIDNALQD 1191


>gi|83950945|ref|ZP_00959678.1| helicase [Roseovarius nubinhibens ISM]
 gi|83838844|gb|EAP78140.1| helicase [Roseovarius nubinhibens ISM]
          Length = 912

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQKAFPQGRTLDKD--PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           + + + R +       +   D     ++ + +     +     + G G+NLQ+  ++LV 
Sbjct: 439 YKAWVERHKGTSVISGSKAADTKAAIVEAFRDDAD--ILIATEAGGEGVNLQF-CSLLVN 495

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDL 193
           F L W+ +  +Q I R+      + G K  V V   I + N  DE V + L  K  + D 
Sbjct: 496 FDLPWNPQRVEQRIGRV-----HRYGQKCDVVVVNFINRSNRADERVFELLEEKFALFDG 550

Query: 194 LLNA 197
           +  A
Sbjct: 551 VFGA 554


>gi|307277424|ref|ZP_07558517.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306505913|gb|EFM75090.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
          Length = 2266

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +     ++  +G+I +L       G G N+Q     +    + W   +  Q
Sbjct: 1893 FIHSAKNDRQREELFEKVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQ 1952

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1953 RDGRIVR----QGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|255973332|ref|ZP_05423918.1| SNF2 family protein [Enterococcus faecalis T1]
 gi|255964350|gb|EET96826.1| SNF2 family protein [Enterococcus faecalis T1]
          Length = 2266

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +     ++  +G+I +L       G G N+Q     +    + W   +  Q
Sbjct: 1893 FIHSAKNDRQREELFEKVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQ 1952

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1953 RDGRIVR----QGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|297744768|emb|CBI38030.3| unnamed protein product [Vitis vinifera]
          Length = 856

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + ++   +++ +N      + F    +CG G++L  G + ++   +  +         R 
Sbjct: 712 SSEQREWSMERFNTSPDARVFFGSIKACGEGISL-VGASRVLILDVHLNPSVT-----RQ 765

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + R  + G K+ V VY L+A ++ +E        K  I  +
Sbjct: 766 AIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKM 807


>gi|157819469|ref|NP_001100940.1| E3 ubiquitin-protein ligase SHPRH [Rattus norvegicus]
 gi|149039552|gb|EDL93714.1| SNF2 histone linker PHD RING helicase (predicted) [Rattus norvegicus]
          Length = 1701

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  K   A  +V   +   L  + KA             I+ + 
Sbjct: 1524 GSHSTKVEAVVRTLMKIQLKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQISRIKTFQ 1583

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +            + R  
Sbjct: 1584 ENLSAFKYDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1637

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1638 RIGQTKPTIVHRFLIKATIEERMQAMLK 1665


>gi|119480763|ref|XP_001260410.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
            NRRL 181]
 gi|119408564|gb|EAW18513.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
            NRRL 181]
          Length = 2130

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 7/157 (4%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLA-----RLQKAFPQGR 92
            A    E     +    K+  L  I++   N    I+   F   +                
Sbjct: 1939 ASLGFEGDRSTQYGGRKMDRLVEIVKGIPNQERAILFIQFRELIDVASKAFDLANITHTV 1998

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERI 151
               +D   I+E+  G   ++  +  S           N ++F S      ++        
Sbjct: 1999 ITARDTKKIEEFKRGNGKVVILNLGSETAAGLNLQCTNHVIFLSPMLAETQYDYDSSMTQ 2058

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G  R V VY+L+ + TID  + Q  R K 
Sbjct: 2059 AIGRALRYGQTRRVHVYHLLMKRTIDINIFQERRRKI 2095


>gi|254516518|ref|ZP_05128577.1| putative helicase, Snf2 family [gamma proteobacterium NOR5-3]
 gi|219674941|gb|EED31308.1| putative helicase, Snf2 family [gamma proteobacterium NOR5-3]
          Length = 1167

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 29/176 (16%)

Query: 51  VHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKD 97
           V D K++AL  II +        +++   F   L+ L                G   D+ 
Sbjct: 659 VDDPKLEALVGIIREKQLMDNNKLLIFSTFRHTLSYLLPRLESAGARVGLVHGGIADDER 718

Query: 98  PCTIQEW--NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             T   +  N+ +               GL+ Q+   ++  + + W+    +Q I RI  
Sbjct: 719 RQTRARFALNKAEPTAFDVLLSSEVGTEGLDNQFCDTLVN-YDIPWNPMRIEQRIGRIDR 777

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKKET 202
               +     AV +  +I +NT+D  +  R   +  +        + +L  L +E 
Sbjct: 778 ----RGQKSEAVSIKNMIVRNTVDARIYFRCLERIGVFRQSLGGSEEILGQLTREM 829


>gi|255954693|ref|XP_002568099.1| Pc21g10670 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589810|emb|CAP95964.1| Pc21g10670 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1167

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
             +                    +  +    +  ++ A   + G GL+     N  +   L
Sbjct: 1001 EENHWSYSEITGRMANRSREIHLDRFRTNDEYKIMIASIKTGGLGLDF-SVANKCILVDL 1059

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            WW+     + ++     R  + G +R V    L+ + +ID+ +    + K+     +++
Sbjct: 1060 WWN-----EAVQDQAFFRLWRLGQQRDVECIMLMIKRSIDDWMDSTQKRKAKDISEVMS 1113


>gi|289621669|emb|CBI51580.1| unnamed protein product [Sordaria macrospora]
          Length = 1534

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 18/163 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCT-- 100
             H+    D  ++ L  + +    A  IV      F   LA+  + +  G +         
Sbjct: 1260 PHYTTKVDTLLRHLLWLRQSDPGAKSIVFSQYPDFLHALAQAFERYRIGYSSFDRGAISS 1319

Query: 101  -IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +   ++  I +   H  +   GLNL    + +       +     Q I R+      + 
Sbjct: 1320 VVCFRDDPSIEVFLLHARAHASGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RI 1373

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G K+   V+  I   T+++ V +    +       L  +++  
Sbjct: 1374 GQKQETTVWLYIVDGTVEQNVYELSVKRR------LEHMERRV 1410


>gi|299744877|ref|XP_001831325.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
 gi|298406330|gb|EAU90488.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
          Length = 2184

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +     +G   DK           +  +L  +              N ++F S    
Sbjct: 2065 YHGIGYLQIKGGVRDKTNSLENFKLGSEQRVLLLNVMDESASGANLTDANHVIFLSPLLT 2124

Query: 141  LEEHQQM-IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                     E   V R  + G  + V ++  I +NTIDE + 
Sbjct: 2125 PSNEVYEANETQAVGRVVRFGQTKHVHIWKFITKNTIDEEIY 2166


>gi|164661227|ref|XP_001731736.1| hypothetical protein MGL_1004 [Malassezia globosa CBS 7966]
 gi|159105637|gb|EDP44522.1| hypothetical protein MGL_1004 [Malassezia globosa CBS 7966]
          Length = 1610

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 63   IEKANAAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            I+       +V   F           +   L  A   G    +    +  +  +  + +L
Sbjct: 1384 IQCTTGEKSLVFSSFARGLDLVASNLERHGLAYARVDGTGGKRSSAAVHAFQHKPDVRVL 1443

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       +E   + R  + G  R  +VY  + 
Sbjct: 1444 LLHSEAQSAGLNLLA-ATHMFLLEPLLNHA-----MELQAIGRVHRIGQTRPTYVYGYMV 1497

Query: 173  QNTIDELVLQR-LRTKSTI 190
            ++T++E ++      K ++
Sbjct: 1498 RDTVEERIVALAAERKQSL 1516


>gi|74316951|ref|YP_314691.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056446|gb|AAZ96886.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 932

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E    ++ A   +   G+NLQ+  ++
Sbjct: 441 QAIYKDWLKRHEGTDRITGSKTADTRAALVEHFKERG-KVMIAT-EAGAEGINLQF-CSL 497

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   + + N  D  V + L  K  +
Sbjct: 498 VINYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYELLSQKFQL 552

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 553 FEGVFGA 559


>gi|116201631|ref|XP_001226627.1| hypothetical protein CHGG_08700 [Chaetomium globosum CBS 148.51]
 gi|88177218|gb|EAQ84686.1| hypothetical protein CHGG_08700 [Chaetomium globosum CBS 148.51]
          Length = 1996

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 99   CTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQ 156
              ++++  GK   +L     S     +     N +VF + +    +EHQ    R    R 
Sbjct: 1884 AMLEKFKLGKAGRVLLLDMDSETSAGSNLTIANHVVFTNPYVHHDQEHQARTVRQARGRC 1943

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQR 183
             +    + V VY+ +   TI+E +L++
Sbjct: 1944 IRTPQDKEVQVYHFMTSGTIEEEMLRK 1970


>gi|307110903|gb|EFN59138.1| hypothetical protein CHLNCDRAFT_137960 [Chlorella variabilis]
          Length = 1904

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 91   GRTLDKDPCTIQEW-NEGKIPLL--FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            G +  +    +  + ++    +L      A    GL L              +       
Sbjct: 1782 GASPGEREAALHAFLHDPACAVLTVVMSTAGGAAGLTLTA-ATTAFLLEPCLNPGL---- 1836

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             E     R  + G  R   V  L+A+++++  VL+  R K  
Sbjct: 1837 -EAQAAARIWRLGQTRPTRVVRLLAEHSVESAVLEVQRRKLE 1877


>gi|297607123|ref|NP_001059497.2| Os07g0434500 [Oryza sativa Japonica Group]
 gi|255677716|dbj|BAF21411.2| Os07g0434500 [Oryza sativa Japonica Group]
          Length = 909

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 758 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 816

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 817 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 863


>gi|169260103|gb|ACA51933.1| DNA methylase [Streptococcus equinus]
          Length = 908

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 536 FVHDANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 595

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 596 RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 642


>gi|145542730|ref|XP_001457052.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424866|emb|CAK89655.1| unnamed protein product [Paramecium tetraurelia]
          Length = 767

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 39/226 (17%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKC-----LQLANGAVYYDEEKHWKE------------ 50
           +R +   + GE  +     +   +       QL N    + E+K   E            
Sbjct: 357 KRRVKVRIPGETSQVKQIGALLNQLGNIDIQQLINKDTIFQEQKDQSEQLLTINSILQKC 416

Query: 51  ---VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC------ 99
                  KIKA++  I     N    +   H    L  +Q+   Q               
Sbjct: 417 YMLTGQAKIKAIKDYICTLFENEIKFLFFAHHQDVLDAVQEYCVQNEIQYMRIDGNVGVE 476

Query: 100 -----TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                     N  +I +      S  +G+ L    + +VF  + W        I      
Sbjct: 477 QRHLNVQMFQNNDEIRIAILSVTSANYGITLTA-ASTIVFGEMHWTPA-----IMLQAED 530

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R  + G  + V  +YLI   T+D+ +  ++  K       ++  K+
Sbjct: 531 RAHRIGQVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFIDGQKQ 576


>gi|189465857|ref|ZP_03014642.1| hypothetical protein BACINT_02219 [Bacteroides intestinalis DSM
           17393]
 gi|189434121|gb|EDV03106.1| hypothetical protein BACINT_02219 [Bacteroides intestinalis DSM
           17393]
          Length = 408

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
              +  L  ++ G  I     A    K  QL++G V  +   H      +     E + +
Sbjct: 229 KSMRDNLMVEIDGNAILGDTPAKLLTKLHQLSSGTVIAENGLHLTFDKSK----AEFVRK 284

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +     + + Y + S+   LQ  F       +       +      +  +       G+ 
Sbjct: 285 QFAGKKVALFYVYQSEAELLQSVFQNWTDSPE------VFQLSTDKVFISQVRRAREGVR 338

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L    + L+FF+L +       +    G  R           VY+L +   I+  +L  +
Sbjct: 339 L-DTADALIFFNLEFS-----FLSYEQGRNRLVSKERTAPADVYFLCSDCGIESKILDAV 392

Query: 185 RTKST 189
             K  
Sbjct: 393 HGKQD 397


>gi|147677051|ref|YP_001211266.1| DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146273148|dbj|BAF58897.1| hypothetical DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 24/193 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------YDEEKHWKEVHDEKI 56
            +  +        E  E     S      Q  +                +  +   + K 
Sbjct: 429 EQILKHRLVAFASEREEVKRLLSLA---RQCESLPDARAEALLEWMYRLQAEENDPELKF 485

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
                 I             F  +             L++     QE+  G   +L    
Sbjct: 486 LIFTEFIPTQEMLKE-----FLENRGFSVVCLNGSMGLEERRRVQQEF-AGHARVLV-ST 538

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            + G GLNLQ+  ++++ + L W+    +Q I R+      + G +  V     + Q+TI
Sbjct: 539 DAGGEGLNLQF-CHVVINYDLPWNPMRLEQRIGRVD-----RIGQEHVVRALNFVLQDTI 592

Query: 177 DELVLQRLRTKST 189
           +  V + L+ K  
Sbjct: 593 EYRVQEVLQEKLA 605


>gi|295099195|emb|CBK88284.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 3253

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +  K      +   G++ +L    A  G G N+Q     L      W   + QQ
Sbjct: 2886 FIHTADSEAKKKELFSKVRAGQVRVLLGSTAKMGAGTNVQDKLIALHDLDCPWRPSDLQQ 2945

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + RI      Q      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 2946 RLGRIVR----QGNENEEVEIYRYVTEGTFDAYLYQLVENKQKFIAQIMTS 2992


>gi|302916821|ref|XP_003052221.1| hypothetical protein NECHADRAFT_106052 [Nectria haematococca mpVI
           77-13-4]
 gi|256733160|gb|EEU46508.1| hypothetical protein NECHADRAFT_106052 [Nectria haematococca mpVI
           77-13-4]
          Length = 759

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 93  TLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             ++    I+E+N     + +L     + G GLNL  G + ++    WW     +Q+I R
Sbjct: 629 KPERRTEVIREFNRQNSLMRVLLLSAVAGGTGLNLAGGCH-VILCEPWWTPGLVEQVIGR 687

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLL 195
                  +   ++ V VY + A  ++ID L+ ++L  K    D  +
Sbjct: 688 -----ANRMPQQKQVQVYKVTAAMSSIDTLIQEKLAKKQEFIDQTV 728


>gi|237743866|ref|ZP_04574347.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432897|gb|EEO43109.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 1163

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 40/217 (18%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------ 54
            Y K +   +    ++        + +     +   +     D +     +  E      
Sbjct: 745 IYDKIRPSSQQEDIIENLKNTGKAALAIIQGMIMTCSHPQLVDRDVDEVPLGSEESLIEE 804

Query: 55  --KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDP 98
             K++ +  I+ +        I+   +      L                       +  
Sbjct: 805 AYKLEHIYTILTEVKKKNEKAIIFTKYKKMQKILWNVIKYWFDIEVGIVNGDADKTSRRR 864

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +    ++   P + G GLN+    N ++ ++  W+  +     E     R  +
Sbjct: 865 ILDDFRKKEGFNVIILSPEAAGVGLNI-VEANHVIHYTRHWNPAK-----EEQATDRAYR 918

Query: 159 AGFKRAVFVYYLIAQN----------TIDELVLQRLR 185
            G K+ V+VYY I  N          T+DE + ++L 
Sbjct: 919 IGQKKDVYVYYPIISNVENIEREEYHTVDEWIRKQLE 955


>gi|291397118|ref|XP_002714908.1| PREDICTED: SNF2 histone linker PHD RING helicase [Oryctolagus
            cuniculus]
          Length = 1688

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1511 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1570

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1571 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1624

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + ++TI+E +   L+
Sbjct: 1625 RIGQTKPTIVHRFLIKSTIEERMQAMLK 1652


>gi|221113471|ref|XP_002160604.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
 gi|221136070|ref|XP_002171130.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 105

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N +V   + ++        ++    R  + G  R V VY  I ++T++E +L    
Sbjct: 6   LTTANTVVLHDIDFNP-----YNDKQAEDRCHRLGQTRQVTVYKFIGKDTVEENILTCGE 60

Query: 186 TKSTIQDLLLNALK 199
            K  ++  L+   +
Sbjct: 61  RKLQLEKELVGNTE 74


>gi|323450185|gb|EGB06068.1| hypothetical protein AURANDRAFT_7750 [Aureococcus anophagefferens]
          Length = 106

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 12/111 (10%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNIL 132
            D   +   F  G + +     I+ +  G         +      S   G+ L      +
Sbjct: 2   RDDGFVVCEFTGGTSANDRDKHIRTFQSGLGKRGAPATVFVITTRSGNVGITLTA-ATRV 60

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                  D              R  + G  + V V     +NT++E +++ 
Sbjct: 61  YLMEPMLDPGTEV-----QAAGRIHRLGQTKDVLVTRFCFKNTVEEDIVKL 106


>gi|255079200|ref|XP_002503180.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226518446|gb|ACO64438.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1345

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 35/170 (20%)

Query: 30  VKCLQLANGAVYYDEEKHWKEVHDEK----------IKALEVIIEKANAAPIIVAYHFNS 79
           ++  ++ N            E    +          +    +I  +A    +++      
Sbjct: 794 MELRKVCNHPALNYPTDKGGEWRTGEDLVRTCGKLWMLDRMLIKLRAAGHRVLLFSTMTK 853

Query: 80  DLARLQKAFPQGRTLDK-----------------DPCTIQEWNEGKIP--LLFAHPASCG 120
            L  L+       T                        I  +N       +      + G
Sbjct: 854 LLDLLETYLKWRMTTPAGEGLEWCRIDGSTALDLREEAITAFNAPGSKKFIFLLSIRAAG 913

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            GLNLQ   + +V +    + +      E   V R  + G +R V V ++
Sbjct: 914 RGLNLQT-ADTVVVYDPDPNPKN-----EEQAVARSHRIGQRREVRVLHM 957


>gi|302853578|ref|XP_002958303.1| hypothetical protein VOLCADRAFT_48099 [Volvox carteri f.
           nagariensis]
 gi|300256328|gb|EFJ40596.1| hypothetical protein VOLCADRAFT_48099 [Volvox carteri f.
           nagariensis]
          Length = 77

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   G NL     ++  F L W+      +     + R  + G  R  FVY L+
Sbjct: 1   ILVSSKAGSLGTNLTSACRMV-IFDLPWNP-----VFNAQAIARIYRFGQTRPTFVYRLL 54

Query: 172 AQNTIDELVLQRLRTKSTIQDLL 194
              T++ELV      K  + + +
Sbjct: 55  YAATLEELVYDLNVDKEELFNKV 77


>gi|312213090|emb|CBX93172.1| similar to SNF2 family helicase [Leptosphaeria maculans]
          Length = 1210

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 55   KIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            K ++ E II   +              L    + + +     K    ++ +N +  + +L
Sbjct: 953  KHQSEEKIIVFYDGDNAAYYIAQGLEVLHINHRIYARTLENTKRSEYVRLFNEDPTVRVL 1012

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                A    GLNL    ++++  +           +E   + R  + G  R V V  L+ 
Sbjct: 1013 LIDVACGALGLNL-NVASVVLIVNPINRP-----FLEAQAIKRAHRIGQTREVLVETLVL 1066

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            +NTI+  +  R +  S     +   L+ +
Sbjct: 1067 ENTIEHAIFDRAKKMSRTDHEVAKELEDD 1095


>gi|328545242|ref|YP_004305351.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
 gi|326414984|gb|ADZ72047.1| Helicase domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1170

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   D+       +  +  + +L A   + G G+NLQ   N++V + L W+    +Q 
Sbjct: 533 HGGTHRDERRRLQALFRSDPDVRVLVAT-DAAGEGVNLQN-ANLMVNYDLPWNPNRLEQR 590

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 591 FGRI-----HRIGQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|74202948|dbj|BAE26184.1| unnamed protein product [Mus musculus]
          Length = 469

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                  +  ++ L  I  +   A  +V   +   L  + KA             I+ + 
Sbjct: 314 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQ 373

Query: 106 --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   +  I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 374 ENLSAFKYDPHINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 427

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           + G  +   V+  + + TI+E +   L+
Sbjct: 428 RIGQTKPTIVHRFLIKATIEERMQAMLK 455


>gi|119357747|ref|YP_912391.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355096|gb|ABL65967.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 967

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + DK    +  +       +     +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 487 SHSADKRQAIVDWFRNEAT--IMIATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGR 543

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   + + N  D+ V Q L  K  +   +  A
Sbjct: 544 C-----HRYGQKFDVVVINFLNKANAADQRVYQLLDQKFKLFSGVFGA 586


>gi|322488767|emb|CBZ24014.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1577

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            C  +  +     +L     + G G+ L    +  +   + W+  +     +     R  
Sbjct: 547 RCISELQSNDACRVLLCSVRAGGVGIKLTA-ASHCILLDVSWNPTD-----DVQATYRLY 600

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
           + G  R V +Y L    T + +V      +S +Q  +  ++  +++  H
Sbjct: 601 RYGQLRPVSIYRLATWGTSEHIVFAYALQRSWLQKKIADISDPRRQQRH 649


>gi|160945895|ref|ZP_02093121.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443626|gb|EDP20631.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2701

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L      W   + QQ
Sbjct: 2318 FIHEANTEVRKKELFSKVRSGQVRVLLGSTQKMGAGTNVQDRLVALHDLDCPWRPGDLQQ 2377

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2378 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2424


>gi|153006826|ref|YP_001381151.1| helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030399|gb|ABS28167.1| helicase domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1145

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 18/200 (9%)

Query: 5   HKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + ++  EL   L+   IE     SK  K  Q+ N    + +++    V  E    L+ +
Sbjct: 454 QRLEKLVELARALEKREIE-----SKLNKLRQVLNEQQIFSDKRMKLLVFTEHKDTLDYL 508

Query: 63  IEKANAAPII---VAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
                    +     +  +              T        +E+ E    +L A  A+ 
Sbjct: 509 AGDGYDGRPLGKLREWGLSVTQIHGGMQIGDRDTPGTRIYAEREFRED-CQVLVATEAAG 567

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NLQ+   +++ + + W+    +Q + RI      + G ++   ++   A NT +  
Sbjct: 568 -EGINLQF-CWLMINYDIPWNPVRLEQRMGRI-----HRYGQQKDCLIFNFAAVNTREGR 620

Query: 180 VLQRLRTKSTIQDLLLNALK 199
           VL++L  +       L   K
Sbjct: 621 VLEKLLMRLAEIKDELGTDK 640


>gi|321460571|gb|EFX71612.1| hypothetical protein DAPPUDRAFT_10188 [Daphnia pulex]
          Length = 1009

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK-------AFPQGRTLDKDP 98
                     ++ L +I +    A  +V   +   L  + +       +     +     
Sbjct: 836 GSHSTKVQAVVQQLLLIKKDDPDAKCLVFSTWIDVLLIVGRALDENNISHCSFFSNKSQV 895

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +  + +L     S  +GLNL      ++      +     Q I R+      +
Sbjct: 896 QLNKFKRDPSVSVLLIPIQSGANGLNLTE-ATHVLLMEPILNPGSELQAIGRV-----HR 949

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            G  +   V+  + ++TI+E +   L  
Sbjct: 950 IGQTKPTVVHRFLVKHTIEEKMAVMLEK 977


>gi|170114873|ref|XP_001888632.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164636327|gb|EDR00623.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 129

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              ++     + G GLN+    N ++    WW+       I R       ++G  R V  
Sbjct: 21  PCRVILVSIGAGGSGLNITA-CNHVILMEPWWNPYVEASSISR-----AYRSGQNRNVHT 74

Query: 168 YYLIAQNTIDELVL 181
           Y+L+ Q++I+E ++
Sbjct: 75  YHLVVQDSIEENIV 88


>gi|326384403|ref|ZP_08206083.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196748|gb|EGD53942.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1164

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G          +++      L+     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 538 HGGTRRADRVAIREQFTNEPDRLVLVATDAAGEGLNLQA-AHLMVNYDLPWNPNRLEQRF 596

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G K    ++ ++A  T +  V  RL  K   Q  
Sbjct: 597 GRI-----HRIGQKNVCRLWNIVAAETREGQVYTRLLAKMEQQRA 636


>gi|218847810|ref|YP_002454516.1| RecQ helicase, putative [Bacillus cereus G9842]
 gi|218546312|gb|ACK98704.1| RecQ helicase, putative [Bacillus cereus G9842]
          Length = 468

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 11/145 (7%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG------RTLDKDPCTIQEWNEGKIP 110
              + ++     + +++   +      + ++ PQ        +  +    I+ + E    
Sbjct: 294 TFTKQLLNDEPNSKVVIFTEYERMARIIYESLPQSVLYTGQISDREKNTVIERFREDPHT 353

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
             F    +   GLNLQ   N +V F L +   E +Q   RI  T          + +YY 
Sbjct: 354 RFFISTRAGSTGLNLQ-VANYMVHFDLPYTATELEQRNGRIDRT----GNNFSNITMYYY 408

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
           I  ++ DE +LQ L  KS +   +L
Sbjct: 409 IMSDSYDEHMLQLLFKKSELAKEIL 433


>gi|255973573|ref|ZP_05424159.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285046|ref|ZP_07565196.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|255966445|gb|EET97067.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502947|gb|EFM72207.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
          Length = 1737

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +     ++  +G+I +L       G G N+Q     +    + W   +  Q
Sbjct: 1364 FIHSAKNDRQREELFEKVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQ 1423

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1424 RDGRIVR----QGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1468


>gi|225427685|ref|XP_002273814.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 903

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + ++   +++ +N      + F    +CG G++L  G + ++   +  +         R 
Sbjct: 765 SSEQREWSMERFNTSPDARVFFGSIKACGEGISL-VGASRVLILDVHLNPSVT-----RQ 818

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + R  + G K+ V VY L+A ++ +E        K  I  +
Sbjct: 819 AIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKM 860


>gi|156031219|ref|XP_001584934.1| hypothetical protein SS1G_14031 [Sclerotinia sclerotiorum 1980]
 gi|154699433|gb|EDN99171.1| hypothetical protein SS1G_14031 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1393

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 21/161 (13%)

Query: 51   VHDEKIKALEVII----EKANAAPIIVAYHFN---SDLARLQKAFPQGRTL--------D 95
            +   K  AL+ ++    E+A    +++   F      + R+  A   G            
Sbjct: 1172 LPSAKTTALKALLLKGFEEAPDDKVVIYVQFRTLARIIGRMCAAEGWGFLYLTGDASLEH 1231

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            +     +   +  I +L A     G GLN  +  N  +   LWW+    Q         R
Sbjct: 1232 RTKAVKEFRIQDNIQILIAGLKCGGLGLNFPF-ANRCISLDLWWNYGVEQ-----QAFGR 1285

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              + G  +  ++  L+ +N++D  +L     K    +  ++
Sbjct: 1286 IFRIGQNKETWMTRLVVRNSVDMRLLGMQDWKLRACEKAID 1326


>gi|68076919|ref|XP_680379.1| DNA helicase [Plasmodium berghei strain ANKA]
 gi|56501303|emb|CAH95084.1| DNA helicase, putative [Plasmodium berghei]
          Length = 835

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++   +   +     F  +             +DK    I+ +  + KI +      +CG
Sbjct: 597 LLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREIYIKNFQSDEKIRIALLSITACG 656

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N +VF  L+W   +  Q  +R              + ++YL+AQNTIDE+V
Sbjct: 657 VGLNLTA-ANTVVFGELYWVPGQMIQAEDRAHRIGTTHD----TINIHYLVAQNTIDEVV 711

Query: 181 LQRLRTKSTIQDLLLNALK 199
            + +  K       LN  +
Sbjct: 712 WKIINRKWNTLTTALNGTE 730


>gi|326480935|gb|EGE04945.1| hypothetical protein TEQG_03790 [Trichophyton equinum CBS 127.97]
          Length = 1000

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
           ++II   +             +    + +       +    +  +NEG+ + +L      
Sbjct: 722 KIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKASQKSEYLSTFNEGESVRVLLMDLRQ 781

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             HGL++    + +   +  WD       IE   + R  +    R V+V  L+ ++T+++
Sbjct: 782 ASHGLHI-ASASRVYIVNPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLKDTLED 835

Query: 179 LVLQRLRTKSTIQDLLLNALKKETIH 204
            +L+R   +  +  + +   +K+ ++
Sbjct: 836 KMLRR---RKAMTSVEMQHAEKDMLN 858


>gi|326473936|gb|EGD97945.1| hypothetical protein TESG_05245 [Trichophyton tonsurans CBS 112818]
          Length = 1168

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   +             +    + +       +    +  +NEG+ + +L      
Sbjct: 890  KIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKASQKSEYLSTFNEGESVRVLLMDLRQ 949

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD       IE   + R  +    R V+V  L+ ++T+++
Sbjct: 950  ASHGLHI-ASASRVYIVNPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLKDTLED 1003

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  +  + +   +K+ ++
Sbjct: 1004 KMLRR---RKAMTSVEMQHAEKDMLN 1026


>gi|126661454|ref|ZP_01732511.1| putative DEAD/H helicase [Cyanothece sp. CCY0110]
 gi|126617267|gb|EAZ88079.1| putative DEAD/H helicase [Cyanothece sp. CCY0110]
          Length = 924

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +K    +++    +   E       + + +  +   + +     +        +L    +
Sbjct: 746 TKLSAYIEILRHELTQRESAITFFQYTDTMDYVRDTLVQLYGNQVACYSGRGGELYEQGQ 805

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    K     + + EG I +L     S   GLNLQ  G +++ +S+ W+  + +Q
Sbjct: 806 WRI-----VKKEQIKRLFKEGVIKVLLCT-KSASEGLNLQTCG-VILMYSMPWNPMQVEQ 858

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I R+    Q        + ++      T++  V +RLR +    + ++  L+
Sbjct: 859 QIGRLDRIGQV----YPTIRIHNFYYDGTVEAKVYRRLRDRIQAFETVVGNLQ 907


>gi|116071951|ref|ZP_01469219.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116065574|gb|EAU71332.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 1029

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 32/151 (21%), Gaps = 20/151 (13%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y+K   +    +        +    +   +  Q+ N       E         +   L 
Sbjct: 833 LYNKTVEDTLDAIATAPRGQRHGQVLALLTRLKQICNHPALAQREGAVDAEFLSRSAKLM 892

Query: 61  ----------------VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
                           ++  +      ++                 G         +  +
Sbjct: 893 RLEEILEEVIEAGDRALLFTQFAEWGHLLQAWMQQRWKSEVPFLHGGTRKSDRQAMVDRF 952

Query: 105 NEGK--IPLLFAHPASCGHGLNLQYGGNILV 133
            E      L      + G GLNL    ++  
Sbjct: 953 QEDPRGPQLFLLSLKAGGVGLNLTRASHVFH 983


>gi|46805904|dbj|BAD17217.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
          Length = 912

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 9/150 (6%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVHDEKIKALEVIIE 64
           +    L  E  +     +      +L N      +             D        +  
Sbjct: 512 KNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFS 571

Query: 65  KANAAPIIV-AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGH 121
             +    +        +            +++K    + ++N+      +      + G 
Sbjct: 572 GRSGFVTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGC 631

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           GLNL  GGN L+ F   W+    +Q+ +R 
Sbjct: 632 GLNL-VGGNRLILFDPDWNPANDKQVYQRQ 660


>gi|295112607|emb|CBL31244.1| Helicase conserved C-terminal domain./SNF2 family N-terminal domain.
            [Enterococcus sp. 7L76]
          Length = 2266

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +     +   +G+I +L       G G N+Q     +    + W   +  Q
Sbjct: 1893 FIHSAKNDRQREELFENVRQGEIRILLGSTEKLGTGTNIQDKLLAVHHVDVPWRPSDLTQ 1952

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q    + V +Y  +A+N+ D  + Q    K    + ++
Sbjct: 1953 RDGRIVR----QGNENKEVQIYRYVAKNSFDSFLWQTQENKLKFINQIM 1997


>gi|315171700|gb|EFU15717.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 2159

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     ++   G I +L       G G N+Q            W   +  Q
Sbjct: 1801 FIHDAKTDLQKDTLFEKMRAGDIRVLLGSTQKVGTGTNVQNKLIAAHHIDCPWKPSDLTQ 1860

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      V +Y  I + T D  + Q    K T    ++
Sbjct: 1861 REGRILR----QGNENEEVAIYRYITKGTFDSYLWQIQEQKLTYISQVM 1905


>gi|281211182|gb|EFA85348.1| SNF2-related domain-containing protein [Polysphondylium pallidum
            PN500]
          Length = 1740

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 42   YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---- 97
            ++ +  W    +  I  L  I +K  +   I+   ++  L  + +A  + +   +     
Sbjct: 1565 FNIKGSWGTKIESVISTLMTINKKKASDKTIIFSQWSDVLEIVSRALNENQIKHERGDKA 1624

Query: 98   ------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                      +   E  I +L        +GLN+      +       +       +E  
Sbjct: 1625 SGIHFQDAIARFRKEPAINVLLLPIKKGANGLNI-IEATHIFIVEPLLNPA-----VEAQ 1678

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + R  + G ++  F++  I +NTI+E V+Q  + K
Sbjct: 1679 AINRIHRFGQEKESFIHRFIIKNTIEEKVVQMSKAK 1714


>gi|195035831|ref|XP_001989375.1| GH11691 [Drosophila grimshawi]
 gi|193905375|gb|EDW04242.1| GH11691 [Drosophila grimshawi]
          Length = 735

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K +   +I          ++        +  +   +  +  +         +        
Sbjct: 517 KEQPKFIIFAHHRVMMDAISDCLRELKVQFVRIDGRTVSDVRADYVDTFQKKSSCKAAVL 576

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +C  G+ L     ++VF  L W+             +R  + G  + V   YL+A  
Sbjct: 577 SLKACNSGITLTA-AELIVFAELDWNPSTL-----AQAESRAHRIGQTKPVICRYLMAHQ 630

Query: 175 TIDELVLQRLRTKSTIQDLL 194
           T D+++   L++K  +   +
Sbjct: 631 TADDIIWNMLKSKQEVLSKV 650


>gi|307694074|ref|ZP_07636311.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 2113

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L       G G N+Q     +    + W   +  Q
Sbjct: 1732 FIHDADTEAKKKDLFAKVRTGQVRVLLGSTQKMGAGTNVQDKLVAVHHLDVGWRPSDMTQ 1791

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + + T D  + Q L  K      ++ +
Sbjct: 1792 RNGRIIR----QGNRNKEVQVYQYVTEETFDAYLYQTLENKQKFISQIMTS 1838


>gi|323449406|gb|EGB05294.1| hypothetical protein AURANDRAFT_17107 [Aureococcus anophagefferens]
          Length = 92

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +      + +L A  A+ G GLN+    N ++F   WW+   H        + R  + 
Sbjct: 1   LERFKTAPSVNVLLATVATAGVGLNI-VEANNVLFLDRWWNPTVHD-----QAMDRTHRL 54

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           G  R V V +L   +T+DE++    + KS    ++L +
Sbjct: 55  GQTRPVDVRFLDGVDTVDEVMRAINKFKSDNAQVILAS 92


>gi|310790973|gb|EFQ26506.1| hypothetical protein GLRG_01650 [Glomerella graminicola M1.001]
          Length = 1142

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 56/140 (40%), Gaps = 10/140 (7%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            E  +  ++II   N             +      + +  + ++    I  +N + ++ ++
Sbjct: 884  EHQEREKLIIFYENENVAWYLAGILEVIHVRHFIYAKKLSYERKMSYINTFNNDPELRVI 943

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                     GL++    + + F +   + +     I+   + R R+   ++ V V  L+ 
Sbjct: 944  LMDLTQAAVGLDM-KAASRIYFINPVLNPQ-----IQTQAIGRARRISQQKPVTVETLVL 997

Query: 173  QNTIDELVLQRLRTKSTIQD 192
            + +I+E++++R   K ++  
Sbjct: 998  RGSIEEVIVER---KKSMSQ 1014


>gi|328958690|ref|YP_004376076.1| hypothetical protein CAR_c24050 [Carnobacterium sp. 17-4]
 gi|328675014|gb|AEB31060.1| hypothetical protein CAR_c24050 [Carnobacterium sp. 17-4]
          Length = 814

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G T  +    I  + E   +I +L ++P + G  ++L    +  V+F   ++L    Q
Sbjct: 676 YGGTTRQEREDIIHTFKEDTNEIQVLVSNPNTLGESVSLHTIVHDAVYFEYNYNLTFMLQ 735

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDLLLNA 197
             +RI     +     R    +YL+        N ID+ +  +L  K       ++ 
Sbjct: 736 SRDRIHRLGLQHDQHTR---YHYLMTVTDMKLFNFIDQKIYNKLSEKEDRMKKAIDG 789


>gi|120402110|ref|YP_951939.1| helicase domain-containing protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954928|gb|ABM11933.1| helicase domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 964

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+         E    +L A  A+   G+NLQ   +++V + + W+    +Q   RI   
Sbjct: 532 DRRRAQANFIAEPSSSVLIATDAAG-EGVNLQ-VAHLMVNYDVPWNPNRLEQRFGRI--- 586

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              + G +    ++ L+A +T +  V + L  K  +Q   L  
Sbjct: 587 --HRIGQRHTCHLWNLVAADTREGDVFRTLLEKVEVQREALGD 627


>gi|256618605|ref|ZP_05475451.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598132|gb|EEU17308.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 2159

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     ++   G I +L       G G N+Q            W   +  Q
Sbjct: 1801 FIHDAKTDLQKDTLFEKMRAGDIRVLLGSTQKVGTGTNVQNKLIAAHHIDCPWKPSDLTQ 1860

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      V +Y  I + T D  + Q    K T    ++
Sbjct: 1861 REGRILR----QGNENEEVAIYRYITKGTFDSYLWQIQEQKLTYISQVM 1905


>gi|85857884|ref|YP_460086.1| SNF2 family DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720975|gb|ABC75918.1| superfamily II DNA/RNA helicase, SNF2 family [Syntrophus
           aciditrophicus SB]
          Length = 1193

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 10/152 (6%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ---EWN 105
                       VI  +       +A    + L R +        + ++          +
Sbjct: 522 IPKPTPSPHQKLVIFTEHRDTLNYLATRITTLLGRKEAVMTIHGGMGREDRMKAQEAFKH 581

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + ++ +L A  A+   G+NLQ   +++V + L W+    +Q   RI      + G     
Sbjct: 582 DPEVQVLLATDAAG-EGINLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQTEVC 634

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++ L+A  T +  V ++L  K       L  
Sbjct: 635 HLWNLVADETREGDVYRKLLDKLEQARQALGG 666


>gi|328848807|gb|EGF98004.1| hypothetical protein MELLADRAFT_84096 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPL 111
           + K      ++   +   +  ++                    ++     +  N   I  
Sbjct: 47  LHKGLGKKTVIYTQWRCFMEWIKIHLDCHGIESGSLHGELNPQERTLQLNRFKNNNNIEA 106

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G N+    + +      W+ +  QQ I+R+      Q G    V VY+++
Sbjct: 107 FIVSIEAGGVGFNMT-CTDEVYLMDAHWNPQIVQQAIDRL-----HQIGQTHPVNVYHVV 160

Query: 172 AQNTIDELVLQR 183
           A  ++++ +   
Sbjct: 161 AGESVEQHLFNV 172


>gi|159027513|emb|CAO89477.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1171

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 21/186 (11%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            +   K   LAN      +++ W+E         E+         I+V       L  L+
Sbjct: 464 IALLKKLEDLANSVRRSGKDRKWEEFSHLLQDEAEMFDAGGYRRKIVVFTEHRDTLNYLK 523

Query: 86  KAF-------------PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +                 G   +      + +  +  + +L A   + G G+NLQ   ++
Sbjct: 524 ERISTLLGNPEAVVTIHGGMGREDRKKAEEGFKQDVGVQVLLAT-DAAGEGINLQR-AHL 581

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V + L W+    +Q   RI      + G      ++ L+A  T +  V + L  K   +
Sbjct: 582 MVNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAHETREGDVYRTLLEKLEAE 636

Query: 192 DLLLNA 197
              L  
Sbjct: 637 QKALGG 642


>gi|327295284|ref|XP_003232337.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
 gi|326465509|gb|EGD90962.1| SNF2 family helicase [Trichophyton rubrum CBS 118892]
          Length = 1167

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   +             +    + +       +    +  +NEG+ + +L      
Sbjct: 889  KIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKASQKSEYLSTFNEGESVRVLLMDLRQ 948

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD       IE   + R  +    R V+V  L+ ++T+++
Sbjct: 949  ASHGLHI-ASASRVFIVNPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLKDTLED 1002

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  +  + +   +K+ ++
Sbjct: 1003 KMLRR---RKAMTSVEMQHAEKDMLN 1025


>gi|317490714|ref|ZP_07949177.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
 gi|316910184|gb|EFV31830.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
          Length = 2244

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T        +    G++ +L       G G N+Q     L      W   + +Q
Sbjct: 1646 YVHDAKTEKAKARLFEAARSGEVRVLMGSTQKLGEGTNVQTRLVALHHLDCPWRPSDLEQ 1705

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + + T D  + Q +  K      +   
Sbjct: 1706 REGRILR----QGNRNKEVGIYRYVTKGTFDSYMYQTVEHKQRFIGQVFGG 1752


>gi|264680182|ref|YP_003280091.1| hypothetical protein CtCNB1_4049 [Comamonas testosteroni CNB-2]
 gi|262210697|gb|ACY34795.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 1177

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 35/216 (16%)

Query: 4   YHKFQRELY---------CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
           Y +F+ E+           +L+ E     +   +           V   +++ W+E+ + 
Sbjct: 439 YEQFEEEVVDQATAAQTIAELEAEVFTLEHLEKQARAL-------VVSGQDRKWEELREI 491

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTI 101
                E++        +I+       L                          +      
Sbjct: 492 LQNTPEMLGPDGLQRKLIIFTEHRDTLNYLADRIRGLLGKREAVTMIHGSTHREDRRKVQ 551

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           + +   +   +     + G G+NLQ   N++V + L W+    +Q   RI      + G 
Sbjct: 552 EMFRTDRDTRVLLATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQ 605

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +A  ++ ++A  T +  V Q+L  K  I+   L  
Sbjct: 606 TQACHLWNMVAAETREGNVFQKLFEKLEIERKALGG 641


>gi|195427783|ref|XP_002061956.1| GK17274 [Drosophila willistoni]
 gi|194158041|gb|EDW72942.1| GK17274 [Drosophila willistoni]
          Length = 1274

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAA----PIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
            +       + +KI  +  +I K         +++   + + L ++ KA      + +   
Sbjct: 1097 QRNSIIGDYSKKITHIVELILKIKNNDDQEKVLIFSQWQAILLQIAKALSDNGIVYRSKC 1156

Query: 99   --CTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                I ++ +  + +  L    +    GLNL      +       +  +     ER  + 
Sbjct: 1157 HNQDIVDFKDPNLKITCLLMPLSRGSKGLNL-IEATHVFLVEPILNPSD-----ERQAIG 1210

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALKK 200
            R  + G  +   V+  I  +TI+E +L           L T   ++++ L+ LKK
Sbjct: 1211 RIHRFGQSKPTTVHRFIVNDTIEENILSLITSDDDSKTLSTHWDLENMTLHGLKK 1265


>gi|85099203|ref|XP_960732.1| hypothetical protein NCU03652 [Neurospora crassa OR74A]
 gi|16944466|emb|CAC18163.2| conserved hypothetical protein [Neurospora crassa]
 gi|28922252|gb|EAA31496.1| predicted protein [Neurospora crassa OR74A]
          Length = 1541

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCT-- 100
             H+    D  ++ L  + +    A  IV   +      LA+  + +  G +         
Sbjct: 1253 PHYTTKVDTLLRHLLWLRQSDPGAKSIVFSQYQDFLHVLAQAFERYHIGYSSFYRSAVSS 1312

Query: 101  -IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  I +   H  +   GLNL    + +       +     Q I R+      + 
Sbjct: 1313 VASFREDPSIEVFLLHARAHASGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RI 1366

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G K+   V+  I   T+++ V +    +       L  +++ 
Sbjct: 1367 GQKQETTVWLYIVDGTVEQNVYELSVKRR------LEHMERR 1402


>gi|295110781|emb|CBL24734.1| DNA methylase [Ruminococcus obeum A2-162]
          Length = 2686

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  K      +   G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2279 FIHEYNTEVKKAELFAKVRAGQVRILMGSTPKLGAGTNVQDRLLALHHLDCPWKPSDLEQ 2338

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2339 QEGRILR----QGNQNDKVKIFRYVTENTFDSYMWQILENKQKFISQIMTS 2385


>gi|291461005|ref|ZP_06026388.2| SNF2-related protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379579|gb|EFE87097.1| SNF2-related protein [Fusobacterium periodonticum ATCC 33693]
          Length = 1166

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 40/217 (18%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------ 54
            Y K +   +    ++        + +     +   +     D +     +  E      
Sbjct: 748 IYDKIKPSSQQEDIIEKLKNTGKAALAIIQGMIMTCSHPQLVDRDVDEVPLGSEESLIEE 807

Query: 55  --KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDP 98
             K++ +  I+ +        I+   +      L                       +  
Sbjct: 808 AYKLEHIYTILTEVKKKNEKAIIFTKYKKMQKILWNVIKYWFDIEVGIVNGDADKTSRRR 867

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +    ++   P + G GLN+    N ++ ++  W+  +     E     R  +
Sbjct: 868 ILDDFRKKEGFNVIILSPEAAGVGLNI-VEANHVIHYTRHWNPAK-----EEQATDRAYR 921

Query: 159 AGFKRAVFVYYLIAQN----------TIDELVLQRLR 185
            G K+ V+VYY I  N          T+DE + ++L 
Sbjct: 922 IGQKKDVYVYYPIISNVEKIERDEYRTVDEWIRKQLE 958


>gi|13905182|gb|AAH06883.1| Shprh protein [Mus musculus]
          Length = 581

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                  +  ++ L  I  +   A  +V   +   L  + KA             I+ + 
Sbjct: 404 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQ 463

Query: 106 --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   +  I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 464 ENLSAFKYDPHINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 517

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           + G  +   V+  + + TI+E +   L+
Sbjct: 518 RIGQTKPTIVHRFLIKATIEERMQAMLK 545


>gi|302658392|ref|XP_003020900.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291184770|gb|EFE40282.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 1167

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   +             +    + +       +    +  +NEG+ + +L      
Sbjct: 889  KIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKASQKSEYLSTFNEGESVRVLLMDLRQ 948

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD       IE   + R  +    R V+V  L+ ++T+++
Sbjct: 949  ASHGLHI-AIASRVFIVNPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLKDTLED 1002

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  +  + +   +K+ ++
Sbjct: 1003 KMLRR---RKAMTSVEMQHAEKDMLN 1025


>gi|302498861|ref|XP_003011427.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291174978|gb|EFE30787.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 1167

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPAS 118
            ++II   +             +    + +       +    +  +NEG+ + +L      
Sbjct: 889  KIIIFYESENTAFWIAEGLELVGTDFRIYAHTLKASQKSEYLSTFNEGESVRVLLMDLRQ 948

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD       IE   + R  +    R V+V  L+ ++T+++
Sbjct: 949  ASHGLHI-AIASRVFIVNPIWDP-----NIESQAIKRAHRISQTRPVYVETLVLKDTLED 1002

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  +  + +   +K+ ++
Sbjct: 1003 KMLRR---RKAMTSVEMQHAEKDMLN 1025


>gi|15226547|ref|NP_179740.1| CHR34 (chromatin remodeling 34); ATP binding / DNA binding /
           helicase/ nucleic acid binding [Arabidopsis thaliana]
 gi|4567276|gb|AAD23689.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252085|gb|AEC07179.1| chromatin remodeling 34 [Arabidopsis thaliana]
          Length = 816

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                     +     G + ++       +  N  +  + F    +CG G++L  G + +
Sbjct: 657 SSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSLEAKVFFGSIKACGEGISL-VGASRV 715

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           +   +  +    Q       V R  + G KR V+ Y L+A ++ +E   +    K  +  
Sbjct: 716 LILDVHLNPSVTQ-----QAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSK 770

Query: 193 L 193
           +
Sbjct: 771 M 771


>gi|119487812|ref|ZP_01621321.1| hypothetical protein L8106_30060 [Lyngbya sp. PCC 8106]
 gi|119455645|gb|EAW36782.1| hypothetical protein L8106_30060 [Lyngbya sp. PCC 8106]
          Length = 1084

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 15/184 (8%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            L   L      A  + S+  K  QL    +   +    +E     +   E I  +  A 
Sbjct: 486 NLVESLDELVSLAEAALSQDPKLDQL----IREIQTIRTQEPDANILIYTEYIDSQKAAV 541

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             +      + +A   +   +             +      +L     +   GLNLQ   
Sbjct: 542 KALEKAEIGTVIAMSGQNSNEI-----RSQMTSRFCREANLVLI-STDTAAEGLNLQQKC 595

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           + L+   L ++    +Q   RI      + G K    V YL  Q T +E +L RL  K  
Sbjct: 596 HHLIHLELPFNPNRLEQRNGRID-----RFGQKFNPEVRYLYLQGTFEERILLRLIAKYE 650

Query: 190 IQDL 193
            Q  
Sbjct: 651 RQRS 654


>gi|91202363|emb|CAJ75423.1| similar to helicase subunit of dna repair complex [Candidatus
           Kuenenia stuttgartiensis]
          Length = 964

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            ++ DK    +  + +    ++     +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 491 SKSADKRAAIVDYFRDEA--VIMIATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGR 547

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                  + G K  V V   + + N  D+ V Q L+ K  + D +  A
Sbjct: 548 C-----HRYGQKFDVVVVNFLNKSNAADQRVYQLLKEKFKLFDGIFGA 590


>gi|8778961|gb|AAD49766.2|AC007932_14 Contains similarity to HARP gene from Homo sapiens gb|AF210842. It
           contains SNF2 N-terminal PF|00176 and helicase
           C-terminal PF|00271 domains [Arabidopsis thaliana]
          Length = 592

 Score = 57.1 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +I        + G G+ L    + ++F  L W   +           R  + G   +V
Sbjct: 452 KDEIKAAVLSIRAAGVGITLTA-ASTVIFAELSWTPGDLI-----QAEDRAHRIGQVSSV 505

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++YL+A +T+D+++   +++K      +L+ 
Sbjct: 506 NIHYLLANDTVDDIIWDVVQSKLDNLGQMLDG 537


>gi|78190609|gb|ABB29626.1| SWI/SNF-related matrix-associated regulator of chromatin a5
           [Priapulus caudatus]
          Length = 377

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 35/176 (19%)

Query: 2   KQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYY------- 42
           K Y    K QR+ Y  +  ++I+  N           +  ++  + AN    +       
Sbjct: 203 KIYIGLSKMQRDWYTKILMKDIDIVNGAGKTDKLRLLNILMQLRKCANHPYLFDGAEPGP 262

Query: 43  -DEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                     +  K+  L+ ++++     + +++       L  L+              
Sbjct: 263 PYTTDMHLVTNGGKMVILDKLLQRLKVRGSRVLIFSQMTRMLDILEDYCAWRGYDYCRLD 322

Query: 91  -GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                +    +I E+N       +      + G G+NL    + ++ +   W+ + 
Sbjct: 323 GSTAHEDRQNSIDEFNRPGSEKFVFMLSTRAGGLGINL-ATADSVIMYDSDWNPQV 377


>gi|313906357|ref|ZP_07839698.1| helicase domain protein [Eubacterium cellulosolvens 6]
 gi|313468821|gb|EFR64182.1| helicase domain protein [Eubacterium cellulosolvens 6]
          Length = 1190

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 31/178 (17%)

Query: 53  DEKIKALEVIIEKANA---APIIVAYHFNSDLARLQKAFPQG----------RTLDKDPC 99
           D K++ L  +I +        +I+   F   L  ++K                  ++   
Sbjct: 678 DPKLEKLFDVIARKQGEENNRVILFSSFQHTLRYVKKHLQAKGYRVAQVDGFVPDEERFE 737

Query: 100 TIQEW-----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             + +     NE  + +L         GL+ Q+  + ++ + L W+    +Q I RI   
Sbjct: 738 IRERFLMDRDNEQAVDVLLFS-EVGCEGLDYQF-CDTMINYDLPWNPMRIEQRIGRIDR- 794

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-------LLLNALKKETIHV 205
              +     +V +Y +I   TID ++  R  +K  + +        +L  + ++ I +
Sbjct: 795 ---RGQKSESVRIYNMITDGTIDAVIHDRCLSKIGVFESSIGECSEILGEINEQIIKI 849


>gi|302889034|ref|XP_003043403.1| hypothetical protein NECHADRAFT_87480 [Nectria haematococca mpVI
           77-13-4]
 gi|256724319|gb|EEU37690.1| hypothetical protein NECHADRAFT_87480 [Nectria haematococca mpVI
           77-13-4]
          Length = 939

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            D            ++ +    I  + N+ +  ++ A   + G G++L    N +     
Sbjct: 817 EDKGMKFCRIDGQASMSQRKQAIATFGNDPECNIMLASIGAVGEGIDL-VCANSVHIIEP 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            W+      M E   + R  + G ++ V V   I  ++I+
Sbjct: 876 HWNP-----MAEAQAIDRVHRIGQQQEVDVVRYIVNDSIE 910


>gi|153811865|ref|ZP_01964533.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
 gi|149831999|gb|EDM87084.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
          Length = 2592

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  K      +   G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2185 FIHEYNTEVKKAELFAKVRAGQVRILMGSTPKLGAGTNVQDRLLALHHLDCPWKPSDLEQ 2244

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2245 QEGRILR----QGNQNDKVKIFRYVTENTFDSYMWQILENKQKFISQIMTS 2291


>gi|162451515|ref|YP_001613882.1| hypothetical protein sce3243 [Sorangium cellulosum 'So ce 56']
 gi|161162097|emb|CAN93402.1| hypothetical protein sce3243 [Sorangium cellulosum 'So ce 56']
          Length = 1214

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNIL 132
              +  +    F  G   D      + +N    E  + +L A   +   G+NLQ     L
Sbjct: 703 HTEEGEQRIMQFHGGMGDDARDEVQRAFNSAPDEHPVRILVAT-DAAREGVNLQAHCADL 761

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               + W+    +Q   RI  T Q        V  +Y +     ++ VL+ +  K     
Sbjct: 762 FHIDIPWNPARMEQRNGRIDRTLQPAP----EVRCHYFVYPQRSEDQVLETVVRKIATVQ 817

Query: 193 LLLNAL 198
             L +L
Sbjct: 818 RELGSL 823


>gi|170727301|ref|YP_001761327.1| helicase domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169812648|gb|ACA87232.1| helicase domain protein [Shewanella woodyi ATCC 51908]
          Length = 937

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 14/168 (8%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
           L+   I+A N      K  Q       + +    K + +   + + +  E  +    +  
Sbjct: 495 LKELIIDATNLLEHDNKSKQ-------FIDTIITKILKNNPKEKVLIFTEYRSTQQYLAK 547

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                  A        G  LD+    I ++             + G G+NLQ   +I++ 
Sbjct: 548 TLQQKIGADSVNLIYGGMKLDERKQQIYDFENTGQ--FLISTEAGGEGINLQEHCHIMIN 605

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           + L W+     Q + R+      + G  + V V+ + + +++DE VL+
Sbjct: 606 YDLPWNPMRLVQRVGRL-----YRYGQLKRVVVFNINSSDSLDEKVLE 648


>gi|237722627|ref|ZP_04553108.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229448437|gb|EEO54228.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 1139

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 36/222 (16%)

Query: 3   QYHKFQRELYCDLQG---------------ENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
           QY   + +    L G                  E    A +  +  ++AN        ++
Sbjct: 423 QYDDLEDDERDALDGILSDPRKFKLFTTSKSLAEIQTEAKEVKRLYEMANS----LYNQN 478

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKD 97
            +E    ++K L       N   +++       L  L++              G ++D+ 
Sbjct: 479 QEEKKYIELKELLKSQGVINGEKLVIFTEHKDTLLYLRERLSNNGYKVAVIHGGLSVDER 538

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                ++   +  +L A  A+   G+NLQ+   +L+ + + W+    +Q + RI      
Sbjct: 539 RQAQWDFMSPETQILIATDAAG-EGINLQF-CRLLINWDIPWNPNRLEQRMGRI-----H 591

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + G K  V V+ ++A NT +  VL RL  K  I    +   +
Sbjct: 592 RYGQKNDVLVFNVVADNTREGQVLSRLLIKLDIIRQSMGDDR 633


>gi|115524177|ref|YP_781088.1| helicase domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518124|gb|ABJ06108.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
          Length = 953

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              + ++  G+  +L A   +   G NLQ+  + ++FF+L W   + QQ I RI     +
Sbjct: 410 KEALDDFISGEAKVLVAS-DAAREGHNLQF-ADEIIFFALPWSPPDIQQWIGRIDRLGTK 467

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                R + +  ++ + +I++ +L  L 
Sbjct: 468 GRAANRRIAITPIVIEGSIEDQILAVLE 495


>gi|308274079|emb|CBX30678.1| hypothetical protein N47_E41900 [uncultured Desulfobacterium sp.]
          Length = 1194

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
               K              VI  +       +     + L R +        + ++    
Sbjct: 515 MPYGKVRIPKPTPSQHQKLVIFTEHRDTLSYLETRITTLLGRKEAVVIIHGGMGREDRMK 574

Query: 102 Q---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                 ++ ++ +L A  A+   G+NLQ   +++V + L W+    +Q   RI      +
Sbjct: 575 AQEAFRHDPEVKVLLATDAAG-EGINLQR-AHLMVNYDLPWNPNRIEQRFGRI-----HR 627

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G      ++ L+A+ T +  V +RL  K       L  
Sbjct: 628 IGQTEVCHLWNLVAEETREGDVYRRLLDKLEQARQSLGG 666


>gi|75907548|ref|YP_321844.1| SNF2-like helicase [Anabaena variabilis ATCC 29413]
 gi|75701273|gb|ABA20949.1| SNF2-related Helicase [Anabaena variabilis ATCC 29413]
          Length = 1082

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           F  G   ++       +N   +     +     +   G+NLQ     L  F + W+    
Sbjct: 562 FHGGIGEERREAIKNAFNADPLRHPLRILIATDAAREGVNLQNNCADLFHFDVPWNPSRM 621

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +Q   RI    QR       V  YY +     ++ VL+ L  K+     
Sbjct: 622 EQRNGRIDRKLQRSPI----VHCYYFVLAQRTEDKVLKVLVKKTETIQK 666


>gi|15823603|dbj|BAB69051.1| putative RNA polymerase associated protein [Sphaerotilus natans]
          Length = 247

 Score = 57.1 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL-------DKDPCTIQEWNEGKIPLLFA 114
              +     +++   + + L  L K   +                 ++ +       +  
Sbjct: 4   YWRENVGKKVVLFAFYRNTLYYLAKRLAEAGVKSIVLHGGMDKSEVLRSFEGDDSVQILL 63

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                  G++LQ+   ++  + L W+    +Q I RI    Q +A     + ++ L+ ++
Sbjct: 64  SSEVASEGVDLQFSSLLVN-YDLPWNPARIEQRIGRIDRIGQAEAK----ILIWNLVYED 118

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKK 200
           T+DE V  RL  +  +    L ++++
Sbjct: 119 TLDERVHDRLLERLNVFRQALGSMEE 144


>gi|85119219|ref|XP_965595.1| hypothetical protein NCU02913 [Neurospora crassa OR74A]
 gi|28927406|gb|EAA36359.1| predicted protein [Neurospora crassa OR74A]
          Length = 846

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 109 IPLLFAHPAS-CGHGLNLQ-YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           I  L     +       L     +        W+        E   + R  + G  R V 
Sbjct: 730 IKSLILQLKNLACDTKRLTLTVASYAFLMEPHWNPTL-----EDQALARIHRMGQTREVT 784

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                 +++ +E V++    K  +  +LL
Sbjct: 785 TARFFIRDSFEERVMEVQEKKRKLVTVLL 813


>gi|242214471|ref|XP_002473058.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727888|gb|EED81795.1| predicted protein [Postia placenta Mad-698-R]
          Length = 67

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               + ++ F   W+ +          + R  + G  + V VY LI Q ++++ +L R+R
Sbjct: 7   LTRASTVIMFDSDWNPQNDM-----QAIARAHRIGQTKVVKVYRLICQGSVEDQMLDRIR 61

Query: 186 TKSTIQ 191
            K  + 
Sbjct: 62  RKLFLS 67


>gi|219118763|ref|XP_002180148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408405|gb|EEC48339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 773

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           D                    +  +  G          + G GL L      ++     W
Sbjct: 631 DAGWQGSCLTGETVAKSRQALVDNFQNGLTAFFVCTFGAGGVGLTLTAACT-VILLDRPW 689

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +           R R+ G  + V   ++ A + +D+ +   +  KS     +L+
Sbjct: 690 TPGD-----AHQAEDRVRRIGQTKPVKSLWMTAFD-LDKQIDSIIEQKSKTAATVLS 740


>gi|87200188|ref|YP_497445.1| helicase-like [Novosphingobium aromaticivorans DSM 12444]
 gi|87135869|gb|ABD26611.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 922

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
                 +   E K+ +      +   GLNLQ  G ++    L W+    +Q I RI    
Sbjct: 753 DREDIKRGVKERKLRV-VCATDAACEGLNLQTLGTLIN-VDLPWNPSRLEQRIGRIKRYG 810

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           Q++    R V +  L+   TIDE V QRL  +   +  +L +L
Sbjct: 811 QQR----REVDMANLVYSGTIDERVYQRLSERMQDRYDILGSL 849


>gi|283781192|ref|YP_003371947.1| helicase domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283439645|gb|ADB18087.1| helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 949

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            DL        ++A +  + L +A  A   + +   K V  + +  ++ ++ +      I
Sbjct: 434 ADLADLEENESDAAKERKRLLDMARAADKLEGDGDPKLV--QMVPIVKRLVSE--GHRPI 489

Query: 73  VAYHFNSDLARLQKAFPQG-------------RTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +   F +    L +   Q                  +    IQE    +  +L       
Sbjct: 490 LFCRFIATAEYLAEQLRQRLPKGVTVIAVTGQIPPSEREARIQEMRNHEQYVLVCT-DCL 548

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G+NLQ+  + ++ + L W+   H+Q   R+    Q +   K  V  YY    N ID +
Sbjct: 549 SEGINLQHLFDSVIHYDLSWNPTRHEQREGRVDRFGQPKPEVK--VLTYYG-TDNQIDGV 605

Query: 180 VLQRLRTKSTIQDLLLN 196
           VL+ L  K       L 
Sbjct: 606 VLEVLIRKHKAIRKALG 622


>gi|28867259|ref|NP_789878.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850493|gb|AAO53573.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 801

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 13/149 (8%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            DEK+          N     +A H+ SD               +    I+ + E     
Sbjct: 389 PDEKVLIFTEYRTTQNYLRDALANHYGSD---QVDLINGSMQHAERREAIKRFEEQGR-- 443

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G G+NLQ   +++V + L W+     Q I R+      + G K+ V V+ + 
Sbjct: 444 FLISTEAGGEGINLQSKCHVMVNYDLPWNPMRLVQRIGRL-----YRYGQKKKVVVFNIQ 498

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             +++D+ ++  +  +    D ++N L +
Sbjct: 499 QADSLDQNIVDLMYERI---DSVVNDLAE 524


>gi|313232505|emb|CBY19175.1| unnamed protein product [Oikopleura dioica]
          Length = 398

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA-------LKKETI 203
           I   R  + G  R V +Y  IA++TI+E +L++   K  + ++ +         LK++ +
Sbjct: 97  IHFCRAHRIGQTRDVHIYRFIAKDTIEENILKKANYKRKLGNVAIEEGRFNIEGLKEDQL 156

Query: 204 HV 205
            V
Sbjct: 157 RV 158


>gi|224499223|ref|ZP_03667572.1| hypothetical protein LmonF1_05832 [Listeria monocytogenes Finland
           1988]
          Length = 966

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 15/142 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 828 EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 884

Query: 65  --KANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
             + N   I++   F   L+ ++                         +  +NEG+  + 
Sbjct: 885 TARENGKRILIFSQFTGMLSIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIF 944

Query: 113 FAHPASCGHGLNLQYGGNILVF 134
                + G GLNL     ++  
Sbjct: 945 LISLKAGGTGLNLVGADTVIFI 966


>gi|242762199|ref|XP_002340327.1| helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723523|gb|EED22940.1| helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 935

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------ 95
           YD          +    +  + +  N+   I+   +   L  + +     +         
Sbjct: 719 YDGYFRPSGFSSKMTMLVSDLRKDMNSTKSIIFSCWTRTLDLVGEHLKSAKIKYARIDGK 778

Query: 96  ----KDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +   T+  ++  +  P+L     +   GLNL    N +      W+       +E 
Sbjct: 779 TPLSERQKTLDNFDSTREKPVLVMTFGTGAFGLNL-KSVNRVFIVEPQWNPA-----VEN 832

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             + R  + G K  V V   + + +I+E
Sbjct: 833 QAIARAIRLGQKEQVLVIKYLVKGSIEE 860


>gi|146320818|ref|YP_001200529.1| DNA methylase [Streptococcus suis 98HAH33]
 gi|145691624|gb|ABP92129.1| DNA methylase [Streptococcus suis 98HAH33]
          Length = 308

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 14  FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 73

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R+      Q    + V +Y+ I + + D  + Q    K      ++ +
Sbjct: 74  RNGRLIR----QGNMHQEVDIYHYITKGSFDNYLWQTQENKLKYITQIMTS 120


>gi|297599954|ref|NP_001048207.2| Os02g0762800 [Oryza sativa Japonica Group]
 gi|255671267|dbj|BAF10121.2| Os02g0762800 [Oryza sativa Japonica Group]
          Length = 879

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 9/150 (6%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-----EKHWKEVHDEKIKALEVIIE 64
           +    L  E  +     +      +L N      +             D        +  
Sbjct: 512 KNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFS 571

Query: 65  KANAAPIIV-AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGH 121
             +    +        +            +++K    + ++N+      +      + G 
Sbjct: 572 GRSGFVTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGC 631

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           GLNL  GGN L+ F   W+    +Q+ +R 
Sbjct: 632 GLNL-VGGNRLILFDPDWNPANDKQVYQRQ 660


>gi|260904350|ref|ZP_05912672.1| putative helicase [Brevibacterium linens BL2]
          Length = 1660

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 4/118 (3%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    +   + ++             G + +L       G G N+Q     L     
Sbjct: 1236 RGMPGESIRFIHEAKSDIDKAQLFAAARAGHVAVLIGSTQKMGVGTNIQARAVALYHMDC 1295

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             W   +  Q   RI      Q      V V  L+ + + D  + Q +  K+     ++
Sbjct: 1296 PWRPSDIAQREGRILR----QGNQNPEVGVVRLVTEKSFDAYMWQAVERKAKFISQIM 1349


>gi|118098421|ref|XP_001234820.1| PREDICTED: E1A binding protein p400 [Gallus gallus]
          Length = 3075

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP 89
            ++ +Q  +G +        K   + +   +   +        +    F +          
Sbjct: 1850 LRLVQYDSGKLEALAVLLLKLKSEGRRVLILSQMILMLDILEL----FLNFHFLTFVRID 1905

Query: 90   QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +    ++    ++ +N + +I        S   G+NL    + +VF+    +      ++
Sbjct: 1906 EYANHEQRQELMKSFNRDKRIFCAILSSHSRSTGVNL-VEADTVVFYDNDLNP-----VM 1959

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +        + G  + + +Y L++ N+++E +L+
Sbjct: 1960 DAKAQEWCDRIGRCKDIHIYRLVSGNSVEEKLLK 1993


>gi|297679361|ref|XP_002817505.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1 [Pongo
            abelii]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|114609684|ref|XP_001172966.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 4 [Pan
            troglodytes]
          Length = 1687

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|296199407|ref|XP_002747128.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH, partial [Callithrix
            jacchus]
          Length = 1681

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1511 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1570

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1571 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1624

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1625 RIGQTKPTIVHRFLIKATIEERMQAMLK 1652


>gi|326204500|ref|ZP_08194357.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
 gi|325985293|gb|EGD46132.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
          Length = 890

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRT 93
           E ++     ++ ++ +  I  +     +I+   F +    L++                 
Sbjct: 447 EYQYVDTKAEKLLEFIYKIQMEYEDFKVIIFTEFVATQQFLKEYLESKGFKIATLNGSMD 506

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +++   T++E+ E     +     + G GLNLQ+  NI++ + L W+  + +Q I R+  
Sbjct: 507 IEERNTTLKEFKERAD--ILISTDAGGEGLNLQF-SNIVINYDLPWNPMKIEQRIGRVD- 562

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI---------QDLLLNALKKE 201
               + G +R V+V+  +   T++  + + L  K             + +L+    E
Sbjct: 563 ----RIGQQRDVYVFNFMLSETVEFRIREVLEEKLATIFEQFGVDKMEDVLDCTDAE 615


>gi|317485751|ref|ZP_07944620.1| hypothetical protein HMPREF0179_01974 [Bilophila wadsworthia 3_1_6]
 gi|316922984|gb|EFV44201.1| hypothetical protein HMPREF0179_01974 [Bilophila wadsworthia 3_1_6]
          Length = 476

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 26/217 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y   +     ++    +   N            ++ G V        + + + +I  L 
Sbjct: 257 LYQAVKTRFLDEINRYGLSDLNMAIFRLFSGLHAVSCG-VLPSGFLGVRRLRNRRIDTLF 315

Query: 61  VIIEKANAAPIIVAYHF------------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
             + +   + +I+  ++             +                +    I  W +  
Sbjct: 316 NELRQFRTSHVIIWANYLESVAALNEALPTAFPQIPVYTLHGRVPATERAAKIDLWKKRG 375

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L A   + G+GL L    + + F+S  W               R  + G K +V   
Sbjct: 376 G-VLVATQGTGGYGLTLTE-SHQVFFYSENWRYALRL-----QAEDRCHRIGQKDSVCYV 428

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            L  ++  DE +   L  K+      L  LK+E   +
Sbjct: 429 TLQGESRFDERIRSALARKAD----ALEELKREVRRL 461


>gi|297679363|ref|XP_002817506.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 2 [Pongo
            abelii]
          Length = 1659

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|109072456|ref|XP_001086512.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 3 [Macaca
            mulatta]
 gi|109072458|ref|XP_001086641.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 4 [Macaca
            mulatta]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|126433436|ref|YP_001069127.1| helicase domain-containing protein [Mycobacterium sp. JLS]
 gi|126233236|gb|ABN96636.1| helicase domain protein [Mycobacterium sp. JLS]
          Length = 1136

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    +     +E+ + +   +     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 527 HGGVRRRERRMITEEFTKNRDCQILLATDAAGEGLNLQA-AHLMVNYDLPWNPNRIEQRF 585

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G +    ++ L+A NT +  V +RL  K   Q  
Sbjct: 586 GRI-----HRIGQEEVCRLWNLVASNTREGAVFERLLQKIEEQRK 625


>gi|224165209|ref|XP_002338786.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
 gi|222873460|gb|EEF10591.1| hypothetical protein POPTRDRAFT_795191 [Populus trichocarpa]
          Length = 101

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           P L A+    G G+NL    + +     WW+ E  +Q I+R+      Q G ++ V +  
Sbjct: 13  PTLLANVKVSGAGINLTA-ASEVYLMEPWWNSEFEEQAIDRV-----HQYGQEKNVIIVR 66

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
           LI Q++I+E +L     K    +   +   K+ 
Sbjct: 67  LIVQDSIEERILMMQERKKQAIEAFGMQGPKER 99


>gi|215427478|ref|ZP_03425397.1| helicase helZ [Mycobacterium tuberculosis T92]
 gi|289750696|ref|ZP_06510074.1| helicase helZ [Mycobacterium tuberculosis T92]
 gi|289691283|gb|EFD58712.1| helicase helZ [Mycobacterium tuberculosis T92]
          Length = 887

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 4/98 (4%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y     ++   ++         N  +   K  Q+ N       ++        K+  LE
Sbjct: 780 LYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPAQLLHDRSPVGRRSGKVIRLE 839

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
            I+ +     ++    F      L              
Sbjct: 840 EILAE--GDRVLCFTQFTEFAELLVPHLAARFGRAARD 875


>gi|225021083|ref|ZP_03710275.1| hypothetical protein CORMATOL_01095 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946223|gb|EEG27432.1| hypothetical protein CORMATOL_01095 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1167

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G          +++      L+     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 531 HGGTPRHLRQAIREQFTHDPRTLVLLATDAAGEGLNLQR-AHLMVNYDLPWNPNRIEQRF 589

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G +    ++ L+A NT +  V  RL  K  +   
Sbjct: 590 GRI-----HRIGQREVCHLWNLVAHNTREGDVFNRLLEKIEVMSE 629


>gi|237739551|ref|ZP_04570032.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229423159|gb|EEO38206.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 1166

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 40/217 (18%)

Query: 3   QYHKFQ--RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE------ 54
            Y K +   +    ++        + +     +   +     D +     +  E      
Sbjct: 748 IYDKIKPSSQQEDIIEKLKNTGKAALAIIQGMIMTCSHPQLVDRDVDEVPLGSEESLIEE 807

Query: 55  --KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDP 98
             K++ +  I+ +        I+   +      L                       +  
Sbjct: 808 AYKLEHIYTILTEVKKKNEKAIIFTKYKKMQKILWNVIKYWFDIEVGIVNGDADKTSRRR 867

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +    ++   P + G GLN+    N ++ ++  W+  +     E     R  +
Sbjct: 868 ILDDFRKKEGFNVIILSPEAAGVGLNI-VEANHVIHYTRHWNPAK-----EEQATDRAYR 921

Query: 159 AGFKRAVFVYYLIAQN----------TIDELVLQRLR 185
            G K+ V+VYY I  N          T+DE + ++L 
Sbjct: 922 IGQKKDVYVYYPIISNVERIERDEYRTVDEWIRKQLE 958


>gi|170763976|ref|ZP_02636612.2| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710974|gb|EDT23156.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 477

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 4/112 (3%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 +   +      +   G   ++       G G N+Q     L      +   + +
Sbjct: 123 CFIHDAKNEIQREKIFSDMRNGNKRIIIGSTQKMGTGTNIQDRLVSLHHLDCPYRPADLE 182

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q   RI      Q    + V +Y    +NT D  + Q +  K      ++ +
Sbjct: 183 QREGRIIR----QGNMNKEVNIYRYATKNTFDSYLWQIVEQKQKFISQIMTS 230


>gi|119026248|ref|YP_910093.1| helicase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765832|dbj|BAF40011.1| helicase [Bifidobacterium adolescentis ATCC 15703]
          Length = 890

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-- 96
              E+     +   K +    +I         +IV   F + L ++          ++  
Sbjct: 679 KCYEDFDLDNMKSPKFEEGLKLIRDLVNQGKKVIVWGLFVNTLQKISSRLDDSDIDNRLI 738

Query: 97  --------DPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                       I ++     P +L ++P + G  ++LQ   +  V+F   ++L    Q 
Sbjct: 739 YGETPVDVRKDFIADFRNPNGPAVLVSNPQTLGESVSLQDVVHDAVYFEFNFNLTYMLQS 798

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQ-------NTIDELVLQRLRTKSTIQDLLLNA--L 198
            +RI         + R    Y+++           ID  V +RL+ K       ++   L
Sbjct: 799 RDRIHRLGLPDGQYTR----YHIMETINDPTEYGFIDSRVYKRLKYKERRMREAIDGDVL 854

Query: 199 KKETIH 204
           K E   
Sbjct: 855 KPEVTD 860


>gi|308804708|ref|XP_003079666.1| SNF2 domain-containing protein / helicase domain-containing prote
            (ISS) [Ostreococcus tauri]
 gi|116058122|emb|CAL53311.1| SNF2 domain-containing protein / helicase domain-containing prote
            (ISS) [Ostreococcus tauri]
          Length = 1574

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 14/145 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKD 97
              W    +  ++ +  I++      +I+   +         +  A   +A          
Sbjct: 1372 GSWGTKIEAIVRRVRFILDTDERTKLIIFSEWDDVLKVVEKAIAANQVRAMRAESGPKFR 1431

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                +  ++G + +L         GLNL      ++      D       +E   + R  
Sbjct: 1432 AAVDRFKHDGTVSVLLLPMKRGAQGLNLTE-AQHVLLLEPVLDPG-----MEAQAIKRVD 1485

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQ 182
            + G  R   V+  + ++T++E V +
Sbjct: 1486 RIGQTRPTCVHRFVIRDTVEENVQK 1510


>gi|119568221|gb|EAW47836.1| SNF2 histone linker PHD RING helicase, isoform CRA_a [Homo sapiens]
          Length = 1687

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|301774839|ref|XP_002922838.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 2
            [Ailuropoda melanoleuca]
          Length = 1689

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1512 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1571

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +            + R  
Sbjct: 1572 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1625

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1626 RIGQTKPTIVHRFLIKATIEERMQAMLK 1653


>gi|281350981|gb|EFB26565.1| hypothetical protein PANDA_011861 [Ailuropoda melanoleuca]
          Length = 1688

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1511 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1570

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +            + R  
Sbjct: 1571 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1624

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1625 RIGQTKPTIVHRFLIKATIEERMQAMLK 1652


>gi|109072462|ref|XP_001086276.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1 [Macaca
            mulatta]
          Length = 1659

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|73945644|ref|XP_533438.2| PREDICTED: similar to SNF2 histone linker PHD RING helicase isoform 1
            [Canis familiaris]
          Length = 1685

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 16/159 (10%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1508 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1567

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1568 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1621

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR--TKSTIQDLL 194
            + G  +   V+  + + TI+E +   L+   KS     +
Sbjct: 1622 RIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSHTSSSV 1660


>gi|154341643|ref|XP_001566773.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064098|emb|CAM40292.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1235

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
           +V Y  +   A        G +  +   +++ +  +           + G G+NLQ   +
Sbjct: 776 LVDYLHSRGWADHTVVLTGGSSEAERLASVRHFREDPACLFFLISIKAGGCGINLQA-AH 834

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++V     +         E   + R  + G +  V   YL   +  +E V QR  TK+  
Sbjct: 835 MVVLVDRDYTATN-----EDQALARVYRIGQRHTVRAVYLATTDPSEERVAQRAATKNKP 889

Query: 191 QDLLLNA 197
           ++ ++N 
Sbjct: 890 REAIIND 896


>gi|114609674|ref|XP_001172938.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 1 [Pan
            troglodytes]
 gi|114609676|ref|XP_001172949.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 2 [Pan
            troglodytes]
          Length = 1659

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|222636933|gb|EEE67065.1| hypothetical protein OsJ_24029 [Oryza sativa Japonica Group]
          Length = 969

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 815 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 873

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 874 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 920


>gi|119568224|gb|EAW47839.1| SNF2 histone linker PHD RING helicase, isoform CRA_d [Homo sapiens]
          Length = 1716

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1515 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1574

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1575 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1628

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1629 RIGQTKPTIVHRFLIKATIEERMQAMLK 1656


>gi|114609678|ref|XP_001172976.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 5 [Pan
            troglodytes]
 gi|114609680|ref|XP_527525.2| PREDICTED: SNF2 histone linker PHD RING helicase isoform 6 [Pan
            troglodytes]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|109734410|gb|AAI17687.1| SHPRH protein [Homo sapiens]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|289547541|ref|NP_001036148.2| E3 ubiquitin-protein ligase SHPRH isoform a [Homo sapiens]
 gi|146325723|sp|Q149N8|SHPRH_HUMAN RecName: Full=E3 ubiquitin-protein ligase SHPRH; AltName: Full=SNF2,
            histone-linker, PHD and RING finger domain-containing
            helicase
 gi|55665328|emb|CAH70765.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
 gi|57209105|emb|CAI41120.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|32480766|gb|AAO26201.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 1683

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1506 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1565

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1566 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1619

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1620 RIGQTKPTIVHRFLIKATIEERMQAMLK 1647


>gi|242018235|ref|XP_002429584.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514551|gb|EEB16846.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 657

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 31/215 (14%)

Query: 5   HKFQRELYCDLQGE--NIEAFN---SASKTVKCLQLANGA-------VYYDEEKHWKEVH 52
            + + E+   L  +   I   N     S + K  Q+ +                ++    
Sbjct: 375 RRLKSEVLAQLPSKIRKIVILNPNMVKSVSKKMRQMESQFESQKGVEKQSTLISYYSITG 434

Query: 53  DEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPC 99
           + K+ A+   I     N+   +V  H ++ L  +       +              +   
Sbjct: 435 NAKLSAVCEYIGDKLENSNKFLVFAHHSNVLDGICDLLNNKKVDYIRIDGTVSSENRQIK 494

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +  +     +      +   GL L     +++F  L+W+  E           R  + 
Sbjct: 495 CQEFQSNPNCKVAVLSLKAANTGLTLTE-AQLVIFAELYWNPGELI-----QAEDRAHRI 548

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G + +V V YLIA+ T D+ +   ++ K  I + +
Sbjct: 549 GQRDSVLVEYLIAKGTADDHLWSLVQLKLNILNKV 583


>gi|27436873|ref|NP_775105.1| E3 ubiquitin-protein ligase SHPRH isoform b [Homo sapiens]
 gi|27369406|gb|AAO06907.1| helicase-like protein [Homo sapiens]
 gi|119568222|gb|EAW47837.1| SNF2 histone linker PHD RING helicase, isoform CRA_b [Homo sapiens]
          Length = 1659

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1510 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1569

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1623

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651


>gi|320104896|ref|YP_004180487.1| SNF2-like protein [Isosphaera pallida ATCC 43644]
 gi|319752178|gb|ADV63938.1| SNF2-related protein [Isosphaera pallida ATCC 43644]
          Length = 955

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ + +     +     +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 487 RTALIEHFRDHAT--ILLATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC----- 538

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   + + N  D+ VL+ L  K  +   +  A
Sbjct: 539 HRYGQKHDVVVINFLNERNAADQRVLELLSEKFNLFSGVFGA 580


>gi|296450799|ref|ZP_06892550.1| SNF2 family protein [Clostridium difficile NAP08]
 gi|296260360|gb|EFH07204.1| SNF2 family protein [Clostridium difficile NAP08]
          Length = 541

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 149 FIHDANTEVKKTDLFSKVKSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVGWKPSDLEQ 208

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V +Y  + + T D  + Q + +K      ++ +
Sbjct: 209 REGRIIR----QGNRNKKVHIYRYVTEGTFDSYMWQLIESKQKFISQIMTS 255


>gi|87124662|ref|ZP_01080510.1| SNF2-related Helicase [Synechococcus sp. RS9917]
 gi|86167541|gb|EAQ68800.1| SNF2-related Helicase [Synechococcus sp. RS9917]
          Length = 1113

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL---LFAHPASCGHGLNLQYGGNILVFF 135
            +  +   +F  G + +       ++N         +     +   G+NLQ     L+ F
Sbjct: 559 REAEQRVASFSGGMSEENRERLKAQFNADPDQEPLRILIATDAAREGVNLQNHCKHLIHF 618

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W+  + +Q   RI    Q        V+ +Y + ++  ++ V+  L  K+ +    L
Sbjct: 619 DIPWNPSKLEQRNGRIDRKLQ----QAPQVWCHYFLLEDRPEDRVMDVLVKKTEVIRQEL 674

Query: 196 NAL 198
            +L
Sbjct: 675 GSL 677


>gi|194670154|ref|XP_594787.4| PREDICTED: helicase-like transcription factor-like [Bos taurus]
 gi|297478761|ref|XP_002690346.1| PREDICTED: helicase-like transcription factor-like [Bos taurus]
 gi|296483940|gb|DAA26055.1| helicase-like transcription factor-like [Bos taurus]
          Length = 1694

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1517 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1576

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +            + R  
Sbjct: 1577 ENLSAFKYDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1630

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1631 RIGQTKPTIVHRFLIKATIEERMQAMLK 1658


>gi|154315192|ref|XP_001556919.1| hypothetical protein BC1G_04635 [Botryotinia fuckeliana B05.10]
 gi|150847598|gb|EDN22791.1| hypothetical protein BC1G_04635 [Botryotinia fuckeliana B05.10]
          Length = 1357

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 47/226 (20%)

Query: 4   YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
           Y       Y  L +G      +  +  ++  + +N    +   +                
Sbjct: 710 YKNILTRNYAALNEGSKGPKQSLLNIMMELKKASNHPYMFPNAEEKILKGSERRDDQLKG 769

Query: 52  ---HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------- 97
                 K+  L+ ++ K   +   +++       L  L           +          
Sbjct: 770 LIASSGKMMLLDRLLAKLKKDNHRVLIFSQMVKMLDILGDYLQLRGYQFQRLDGTVAAGP 829

Query: 98  -PCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
               I  +N              + G G+NL    + +V F   W+ +      +   + 
Sbjct: 830 RRQAIDHFNADGSNDFCFLLSTRAGGLGINLMT-ADTVVIFDSDWNPQA-----DLQAMA 883

Query: 155 RQRQAGFKRA-VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           R  + G K+  + +   +             + K  +++    A K
Sbjct: 884 RAHRIGQKKPFITIQRGVTD-----------KEKKELREKAAKAGK 918


>gi|154484906|ref|ZP_02027354.1| hypothetical protein EUBVEN_02624 [Eubacterium ventriosum ATCC
           27560]
 gi|149733859|gb|EDM49978.1| hypothetical protein EUBVEN_02624 [Eubacterium ventriosum ATCC
           27560]
          Length = 1090

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +  +GKI ++       G G+N+Q     L    + W   +  Q
Sbjct: 746 FAHSANTEKKRKQLFDDVRKGKIRVILGSTFKIGMGVNIQDRLIALHHIDVPWRPADMVQ 805

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              RI      Q    + V +Y  I + + D    Q L TK      LL
Sbjct: 806 REGRILR----QGNINQEVEIYRYITEGSFDAYSWQLLETKQRFISELL 850


>gi|302423432|ref|XP_003009546.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352692|gb|EEY15120.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 539

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 65  KANAAPIIVAYHFNSDLARLQKA-----------FPQGRTLDKDPCTIQEWNEGKIPLLF 113
                  I+   F   L                 + +  +  K         E  + +L 
Sbjct: 359 DFPKDKCIIFVQFVKTLLMTGIMLQLEGIDFVYTYGKMLSKQKSKAKNIFETEPTVKVLV 418

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A   +C  GLNL    N ++    WW+    QQ   R+      + G  +  +   L + 
Sbjct: 419 ATMGTCSEGLNLT-CANRVIVVDAWWNSAREQQSFGRV-----VRTGQCKETYCVRLKSP 472

Query: 174 NTIDELVLQRLRTKSTIQDLLLNA 197
           N+ID+ + +   +K+ + D  +  
Sbjct: 473 NSIDDKIERIQTSKNEVVDCAVQD 496


>gi|154321115|ref|XP_001559873.1| hypothetical protein BC1G_01432 [Botryotinia fuckeliana B05.10]
 gi|150851970|gb|EDN27162.1| hypothetical protein BC1G_01432 [Botryotinia fuckeliana B05.10]
          Length = 855

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 11/157 (7%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR---LQKAFPQGRTLDK 96
           +   + K +    D   + +  + E    +  IV   F   L        AF  G +   
Sbjct: 605 IELQDNKSFGTKIDTLARHILYLRESDPGSKSIVFSQFTEFLPVLASAFDAFRIGHSSID 664

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            P  ++++ N+  I +   H  +   GL L    + + F     +       I   G +R
Sbjct: 665 RPNGVEKFKNDPGIEVFLLHSRAHSAGLTLVN-ASNIFFCEPLLNTA-----IALQGESR 718

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             + G K    ++ ++  NT+D+ + + L  K  +  
Sbjct: 719 VHRIGQKFETNIWVMVMGNTVDQSIYE-LSFKRRLDH 754


>gi|288561612|ref|YP_003429018.1| SNF2/RAD54 family helicase [Bacillus pseudofirmus OF4]
 gi|288548244|gb|ADC52126.1| SNF2/RAD54 family helicase [Bacillus pseudofirmus OF4]
          Length = 466

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 64/209 (30%), Gaps = 22/209 (10%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           + E         I+     S      ++A+    +DE    +          +       
Sbjct: 223 KEEAEKRGDKYRIQTIKICSWMDVLRKVASCPWSFDEFTSTELPAKVSYLKNKTDQYMNK 282

Query: 68  AAPIIVAYHFNSDL------------ARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLF 113
              +++                     +       G   ++    ++ + +   P  ++ 
Sbjct: 283 DQKVLIFTAHKKTAVVLAEFLSSKYPDKEAVCIHGGVKKEERFQYMERFQDPTDPLSIIV 342

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               +      L      +  F + ++ ++ QQ   R       + G    V VY+LI  
Sbjct: 343 FTVRTGAESYTLTE-AKGVFIFDMDFNGKKLQQCFSR-----AVRLGQTDVVDVYWLITL 396

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
           +TI+  +   + +K +  D+ ++  K+E 
Sbjct: 397 DTIEVNIHGVILSKDSGVDIAVD--KEEI 423


>gi|169608868|ref|XP_001797853.1| hypothetical protein SNOG_07519 [Phaeosphaeria nodorum SN15]
 gi|111063865|gb|EAT84985.1| hypothetical protein SNOG_07519 [Phaeosphaeria nodorum SN15]
          Length = 1274

 Score = 56.7 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118
            ++II                 L    + + +          +  +N +  + +L    A 
Sbjct: 1014 KIIIFYDGDNAAFYIAQCLEMLYINHRIYARTLNNVARSEYVALFNSDPDVRVLLIDVAC 1073

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLNL    +I++  +           IE   + R  + G  + V V  L+ +NTI+ 
Sbjct: 1074 GALGLNL-NAASIVLIVNPINRPS-----IEAQAIKRAHRIGQDKKVTVETLVLENTIEH 1127

Query: 179  LVLQRLRTKSTIQDLL 194
             + +    K +    L
Sbjct: 1128 AIFK-HAKKMSRAQHL 1142


>gi|331013606|gb|EGH93662.1| SNF2-related:helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 316

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 36/191 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ L  ++ +
Sbjct: 148 QVERD---EYNQIMRSDQHRFARLGALRQL---------------LERVKVRILADLMAE 189

Query: 66  AN-AAPIIVAYHFNSDLARLQKAFPQG-----------RTLDKDPCTIQEWNEGKIPLLF 113
            +    +I+   +   +A L++   +                +         +    +  
Sbjct: 190 LDVDDKVILFCEYQESVATLREHCLKMGVGCVTLVGSDSPKKRQKAIDAFQQDPDCRVFI 249

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 250 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRVVVVKIPLAE 303

Query: 174 NTIDELVLQRL 184
           +TID+ + Q L
Sbjct: 304 DTIDQQLWQML 314


>gi|257091528|ref|YP_003165171.1| hypothetical protein CAP2UW1_4591 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048537|gb|ACV37724.1| hypothetical protein CAP2UW1_4591 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1097

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T + +      +L     +   GLN Q+ G ++  F   W+    +Q I R+    Q
Sbjct: 826 REETKRRFKRQDAQVLVCT-DAAAEGLNFQFCGALVN-FDSPWNPMRIEQRIGRVDRLGQ 883

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                   + +  L+ ++T++  V + LR++ ++   ++  L+
Sbjct: 884 ----QFPRIAIVNLMYEDTVETDVYRALRSRISLFTSVVGPLQ 922


>gi|261377777|ref|ZP_05982350.1| helicase/SNF2 domain protein [Neisseria cinerea ATCC 14685]
 gi|269146067|gb|EEZ72485.1| helicase/SNF2 domain protein [Neisseria cinerea ATCC 14685]
          Length = 943

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +DK    I  +   +  ++ A   S   G+NLQ+  ++L+ + L W+ +  +
Sbjct: 471 PHHTGSPAVDKRTALIDAFKN-QAKIMIAT-ESAAEGVNLQF-CSLLINYDLPWNPQRIE 527

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
           Q I R       + G K  V V   +  +N  D  VL+ L  K  + D +  A
Sbjct: 528 QRIGRC-----HRYGQKSDVVVINFLNTRNDADRRVLELLTDKFKLFDGVFGA 575


>gi|60544834|gb|AAX22755.1| SWI2/SNF2-like protein [Arabidopsis thaliana]
          Length = 698

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           I+++++      +      + G G+NL    +  + +   W+ +     ++   + R  +
Sbjct: 551 IKDFSDEKSSCSIFLLSTRAGGLGINLTA-ADTCILYDSDWNPQ-----MDLQAMDRCHR 604

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G  + V VY L    +I+   +  L TK
Sbjct: 605 IGQTKPVHVYRLSTAQSIE---IHLLSTK 630


>gi|73945646|ref|XP_861216.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase isoform 3
            [Canis familiaris]
          Length = 1575

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 16/159 (10%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1398 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1457

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1458 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1511

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR--TKSTIQDLL 194
            + G  +   V+  + + TI+E +   L+   KS     +
Sbjct: 1512 RIGQTKPTIVHRFLIKATIEERMQAMLKTAEKSHTSSSV 1550


>gi|301774837|ref|XP_002922837.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like isoform 1
            [Ailuropoda melanoleuca]
          Length = 1685

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1508 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1567

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +            + R  
Sbjct: 1568 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1621

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1622 RIGQTKPTIVHRFLIKATIEERMQAMLK 1649


>gi|126310663|ref|XP_001370692.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase
            [Monodelphis domestica]
          Length = 1686

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L+ I  K   A  +V   +   L  + KA      +      I  + 
Sbjct: 1509 GSHSTKVEAVVRTLKRIQFKNPGAKSLVFSTWQDVLDIISKALYDNNMVFAQINGINRFQ 1568

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + KI +L     +  +GLN+      ++      +     Q I R+      
Sbjct: 1569 ENLSAFKYDPKINILLLPLHTGSNGLNI-IEATHVLLVEPILNPAHELQAIGRV-----H 1622

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1623 RIGQTKPTIVHRFLIKATIEERMQAMLK 1650


>gi|218199507|gb|EEC81934.1| hypothetical protein OsI_25800 [Oryza sativa Indica Group]
          Length = 969

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 815 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 873

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 874 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 920


>gi|291540174|emb|CBL13285.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2510

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2128 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2187

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2188 REGRGIR----QGNENEEVVIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|134114115|ref|XP_774305.1| hypothetical protein CNBG2860 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50256940|gb|EAL19658.1| hypothetical protein CNBG2860 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1163

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L            +      +  +    + +          GLNL    N ++F    W 
Sbjct: 943  LDIASTFVGHTLHVQNRRLALDYFETPGVRVCLMDLKLAARGLNLVS-ANRVIFLGPVWS 1001

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L+     ++   + R  + G  R   V  L+ + T +E + +R
Sbjct: 1002 LD-----VQAQAIKRVHRIGQTRPTLVQILVTEGTFEEDIARR 1039


>gi|148226355|ref|NP_001089668.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Xenopus laevis]
 gi|123903207|sp|Q498E7|SMAL1_XENLA RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|71681279|gb|AAI00246.1| Smarcal1 protein [Xenopus laevis]
          Length = 960

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAF 88
           A+     +  +      ++ +  ++ ++     +V  H    L                 
Sbjct: 718 ALLLFYNRTAEAKIRSVLEYIIDLL-ESGREKFLVFAHHKLVLDNICEELGKKEVPYIRI 776

Query: 89  PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               +         ++    K  +      +   GL L    +++VF  L+W+       
Sbjct: 777 DGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTL-SSADLVVFAELFWNPGVLI-- 833

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 834 ---QAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKV 873


>gi|295675218|ref|YP_003603742.1| helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435061|gb|ADG14231.1| helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 1173

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 28/202 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L+ E +   +   K               +++ W+E+ +      E+        
Sbjct: 454 QTIAELEAEVVTLEHLEKKAKALR-------DGGQDRKWEELREILQNTPEMRGPDGLQR 506

Query: 70  PIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAH 115
            +I+       L                      G   D      + + N+    +L A 
Sbjct: 507 KLIIFTEHRDTLNYLADRIRGLLGKHEAVTMIHGGTHRDDRRKVQELFRNDKDTRVLLAT 566

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            A+   G+NLQ   N++V + L W+    +Q   RI      + G  +   ++ ++A  T
Sbjct: 567 DAAG-EGVNLQN-ANLMVNYDLPWNPNRLEQRFGRI-----HRIGQTQVCHLWNMVAAET 619

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
            +  V Q+L  K  ++   L  
Sbjct: 620 REGDVFQKLLEKLEVERKALGG 641


>gi|222481173|ref|YP_002567409.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454549|gb|ACM58812.1| helicase domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 988

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNE 106
           + ++ I+       I++   +   L  L+                    +     +  NE
Sbjct: 481 QFIDRILSNDPDEKILIFTEYTDTLEYLRDRVFDDHDIAQVYGDLDQDRRREEMEKFENE 540

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                L     +   GLNLQ+  +I+V + L W+     Q + R+      + G +R V 
Sbjct: 541 AN---LMLATDAAQEGLNLQF-AHIMVNYDLPWNPIRIDQRMGRL-----HRYGQERTVE 591

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +  L  +NT +  +L  L  K+   +  L  ++ + +
Sbjct: 592 IRNLFFKNTRESEILNLLVEKTNQIESDLG-MRSDVL 627


>gi|86739797|ref|YP_480197.1| helicase-like protein [Frankia sp. CcI3]
 gi|86566659|gb|ABD10468.1| helicase-like [Frankia sp. CcI3]
          Length = 829

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    +     +E+ + +   +     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 527 HGGVRRGERRQITEEFTKNRDVQILLATNAAGEGLNLQA-AHLMVNYDLPWNPNRIEQRF 585

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G  +   ++ L+A NT +  V  RL  K      
Sbjct: 586 GRI-----HRIGQDKVCRLWNLVASNTREGEVFTRLLAKLDQMRQ 625


>gi|194337162|ref|YP_002018956.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309639|gb|ACF44339.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 927

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K     +   +    +L    A+   G+NLQ+   IL  F L W+  + +Q I R
Sbjct: 553 GDHGAKVAAERRFRQKDGPRVLVCT-AAGREGINLQF-SRILFNFDLPWNPMDVEQRIGR 610

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G      VY L+  +TI+  +   L  K T     +  +  + 
Sbjct: 611 I-----HRYGQNYTAQVYNLVLSDTIEGRIFLMLDEKLTEIARTVGKVDDQG 657


>gi|196044225|ref|ZP_03111461.1| helicase domain protein [Bacillus cereus 03BB108]
 gi|196024864|gb|EDX63535.1| helicase domain protein [Bacillus cereus 03BB108]
          Length = 1066

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
            Y E +         +   E I+    +   +            + A   G    +    
Sbjct: 469 KYQELEETLFGASGLLNHDEKILIFTESVDTLSYLEEKLLKRVPKIAKIIGSLSMEQRRK 528

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             E    +  ++ A   + G  +NLQ+  N ++ + + W+  + +Q + RI      + G
Sbjct: 529 QVEMFRNECQIMIAT-DAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI-----HRIG 581

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K  VFV+ L+AQNT +  V+ +L  K  +    L +
Sbjct: 582 QKNEVFVFNLVAQNTREGSVMTKLLDKMELMKSDLGS 618


>gi|193785257|dbj|BAG54410.1| unnamed protein product [Homo sapiens]
          Length = 882

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46  KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                  +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 705 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 764

Query: 106 --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                   + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 765 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 818

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           + G  +   V+  + + TI+E +   L+
Sbjct: 819 RIGQTKPTIVHRFLIKATIEERMQAMLK 846


>gi|254197450|ref|ZP_04903872.1| dead/deah box helicase [Burkholderia pseudomallei S13]
 gi|169654191|gb|EDS86884.1| dead/deah box helicase [Burkholderia pseudomallei S13]
          Length = 960

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E    ++ A   +   G+NLQ+  ++
Sbjct: 469 QAIYKDWLKRHEGTDRVTGSKTADTRAALVEHFKERG-KVMIAT-EAGAEGINLQF-CSL 525

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   +   N  D+ V + L  K  +
Sbjct: 526 VINYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFVDLSNEADKRVYKLLAEKFQL 580

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 581 FEGVFGA 587


>gi|114609682|ref|XP_001172960.1| PREDICTED: SNF2 histone linker PHD RING helicase isoform 3 [Pan
            troglodytes]
          Length = 1572

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1395 GSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1454

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1455 ENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1508

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1509 RIGQTKPTIVHRFLIKATIEERMQAMLK 1536


>gi|115522588|ref|YP_779499.1| SNF2-related protein [Rhodopseudomonas palustris BisA53]
 gi|115516535|gb|ABJ04519.1| SNF2-related protein [Rhodopseudomonas palustris BisA53]
          Length = 963

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +   +  +L A   S   G+NLQ+  ++L+ F L W+ +  +Q I R       +
Sbjct: 501 AIVNAFKSDEKTILIAT-ESGAEGINLQF-CSLLINFDLPWNPQRVEQRIGRC-----HR 553

Query: 159 AGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            G K  V V  ++  +N  ++ + + L+ K  + + L  A
Sbjct: 554 YGQKIDVTVVNMLNRKNQAEKRIYELLKNKFNLFEGLFGA 593


>gi|327287818|ref|XP_003228625.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Anolis carolinensis]
          Length = 960

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 54  EKIKALEVI---IEKANAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKDPCT 100
            KI  +      + ++     +V  H    L                        +    
Sbjct: 746 AKIHCIIEYILDLLESGKEKFLVFAHHKLVLDAIAEALAKKHIGYIRIDGSTPSAERQSL 805

Query: 101 IQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            QE+    K+ +      +   GL L    +++VF  L+W+              R  + 
Sbjct: 806 CQEFQLSEKLSVAVLSLTAANMGLTL-SSADLVVFAELFWNPGVLI-----QAEDRAHRI 859

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 860 GQTSSVNIHYLVAKGTADDYLWPMIQEKIRV 890


>gi|311243824|ref|XP_001924825.2| PREDICTED: e3 ubiquitin-protein ligase SHPRH [Sus scrofa]
          Length = 1685

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L  I  +   A  +V   +   L  + KA             ++ + 
Sbjct: 1508 GSHSTKVEAVVRTLMRIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQ 1567

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + +I +L     +  +GL +      ++      +     Q I R+      
Sbjct: 1568 ENLSAFKHDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV-----H 1621

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 1622 RIGQTKPTIVHRFLIKATIEERMQAMLK 1649


>gi|192292173|ref|YP_001992778.1| SNF2-related protein [Rhodopseudomonas palustris TIE-1]
 gi|192285922|gb|ACF02303.1| SNF2-related protein [Rhodopseudomonas palustris TIE-1]
          Length = 961

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +   +  +L A   S   G+NLQ+  ++L+ F L W+ +  +Q I R       +
Sbjct: 499 AIVNAFKSDQKTILIAT-ESGAEGINLQF-CSLLINFDLPWNPQRVEQRIGRC-----HR 551

Query: 159 AGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            G K  V V  ++  +N  ++ + + L+ K  + + L  A
Sbjct: 552 YGQKIDVTVVNMLNRKNQAEKRIYELLKNKFNLFEGLFGA 591


>gi|304310478|ref|YP_003810076.1| helicase/ type iii restriction enzyme [gamma proteobacterium HdN1]
 gi|301796211|emb|CBL44417.1| helicase/ type iii restriction enzyme [gamma proteobacterium HdN1]
          Length = 973

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R          +T D     ++ + E    ++ A   +   G+NLQ+  ++
Sbjct: 478 QVIYKDWLKRHAGTDYVTGSKTADTRAALVEHFKERGT-VMIAT-EAGAEGINLQF-CSL 534

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   + + N  D  V + L  K  +
Sbjct: 535 VINYDLPWNPQRIEQRIGRC-----HRYGQKYDVVVVNFVDRSNEADARVYELLEQKFQL 589

Query: 191 QDLLLNA 197
            D +  A
Sbjct: 590 FDGVFGA 596


>gi|291299114|ref|YP_003510392.1| helicase domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568334|gb|ADD41299.1| helicase domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1137

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G    +     +E+       +L A   + G GLNLQ   +++V + L W+    +Q 
Sbjct: 527 HGGVRRGERRQITEEFTQNSDCQILIAT-DAAGEGLNLQA-AHLMVNYDLPWNPNRIEQR 584

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             RI      + G +    ++ ++A NT +  V  RL  K +    
Sbjct: 585 FGRI-----HRIGQEEVCRLWNIVASNTREGEVFTRLLEKISEMGR 625


>gi|196048388|ref|ZP_03115564.1| SNF2 family protein [Bacillus cereus 03BB108]
 gi|196020821|gb|EDX59552.1| SNF2 family protein [Bacillus cereus 03BB108]
          Length = 2366

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 22/176 (12%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--- 86
            +K     N        K        K      +I   +  P    ++   ++ R      
Sbjct: 1695 MKLKACCN--------KVHSVWQASKENKSTQMIFSDSGTPKTGQFNVYDEIKRQLIEKG 1746

Query: 87   -------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                        +T  +      +  +G + +L    +  G G N+Q     +      W
Sbjct: 1747 IPENEIAFIHDAKTDKQRDVLFDKVRKGDVRVLLGSTSKVGTGTNVQDKLLAVHHIDCPW 1806

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +  Q   RI      Q      V +Y  + +N+ D  + Q    K      ++
Sbjct: 1807 RPSDLTQRDGRIVR----QGNENSEVQIYRYVTKNSFDSYLWQIQEQKLKYITQVM 1858


>gi|115467422|ref|NP_001057310.1| Os06g0255700 [Oryza sativa Japonica Group]
 gi|52076415|dbj|BAD45245.1| putative DNA repair protein [Oryza sativa Japonica Group]
 gi|52077256|dbj|BAD46298.1| putative DNA repair protein [Oryza sativa Japonica Group]
 gi|113595350|dbj|BAF19224.1| Os06g0255700 [Oryza sativa Japonica Group]
          Length = 946

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 795 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 853

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 854 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|309791574|ref|ZP_07686071.1| SNF2-related helicase [Oscillochloris trichoides DG6]
 gi|308226395|gb|EFO80126.1| SNF2-related helicase [Oscillochloris trichoides DG6]
          Length = 1093

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 97  DPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
                + +N       + +L A   +   GLN Q     L  F L W+    +Q   RI 
Sbjct: 589 RQEIQRRFNADPAEEPLRILLAT-DAAREGLNFQAHCADLFHFDLPWNPGRIEQRNGRID 647

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              Q        V  +Y +    +++ VL+ L  K+      L +L
Sbjct: 648 RKLQPAP----EVRCHYFVLPQRVEDRVLEVLVKKTETIKRELGSL 689


>gi|295669226|ref|XP_002795161.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285095|gb|EEH40661.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1282

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            I  +               L    + +            +  +N  + + +L        
Sbjct: 945  IFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSDRSAYLALFNTTELVRVLLMDLRQAS 1004

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            HGL++    + +   +  WD       +E   + R  +    + V+V  L+ +NT+++ +
Sbjct: 1005 HGLDI-PCASRVFIVNPIWDP-----NVESQAIKRAHRISQGKPVYVETLVLKNTLEDKM 1058

Query: 181  LQRLRTKSTIQDLLLNALKKETIH 204
            LQR   +  + D  L   +K+ + 
Sbjct: 1059 LQR---RKQMSDAELRHAEKDPLD 1079


>gi|293392002|ref|ZP_06636336.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952536|gb|EFE02655.1| putative DEAD/DEAH box helicase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 958

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           +   L R +        +T D     ++ + E     +     +   G+NLQ+  ++++ 
Sbjct: 472 YKDWLKRHKGSDKITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSLIIN 528

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDL 193
           + L W+ +  +Q I R       + G K  V V   + + N  D+ V + L  K  + + 
Sbjct: 529 YDLPWNPQRVEQRIGRC-----HRYGQKHDVVVVNFVDETNEADQRVYELLEQKFQLFNG 583

Query: 194 LLNA 197
           +  A
Sbjct: 584 VFGA 587


>gi|218197913|gb|EEC80340.1| hypothetical protein OsI_22411 [Oryza sativa Indica Group]
          Length = 949

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 795 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 853

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 854 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|313115790|ref|ZP_07801236.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621890|gb|EFQ05399.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 605

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G + +L    A  G G N+Q     +    + W   +  Q
Sbjct: 223 FIHNADTEAKKAALFSKVRSGDVRVLLGSTAKMGAGTNVQSRLVAVHHLDVGWKPSDMTQ 282

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V V+  + + T D  + Q L  K      ++ +
Sbjct: 283 RNGRIIR----QGNMNKEVKVFNYVTEGTFDSYLFQTLENKQRFISQIMTS 329


>gi|311261056|ref|XP_003128623.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Sus
           scrofa]
          Length = 1278

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 49/170 (28%), Gaps = 26/170 (15%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHW---------KE 50
           K Y     + +  L     +    N  +  ++  +  N     + E              
Sbjct: 323 KYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGEGPPGTHDFHLQAMV 382

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DP 98
               K+  ++ ++ K       +++       L  L+    Q R L +            
Sbjct: 383 RSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQ 442

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             I  +++      +      + G G+NL    +  + F   W+ +   Q
Sbjct: 443 AAIDRFSKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQNDLQ 491


>gi|328848688|gb|EGF97890.1| hypothetical protein MELLADRAFT_84184 [Melampsora larici-populina
           98AG31]
          Length = 420

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 62/202 (30%), Gaps = 27/202 (13%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL- 84
             +        N  + + + +   +  ++ I  +E  +        I        +    
Sbjct: 204 FKQLTNLRMTCNHPLLFRQIEQGVDAENQPINLIEQKLGIKLPDERIHNSKVRDAIPTDW 263

Query: 85  ---------QKAFPQGRTLDKDPCTI----QEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                         + ++       I    + + +    +         H +  Q   + 
Sbjct: 264 KLSPKIADLVHMLQKKKSHGGGKSVIYTQWKSFIDCICRINRGWWGRFEHDMCGQGLFDA 323

Query: 132 LVFF-SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +V+     W+ +  QQ ++R+      + G  + V V++++   +I++ +    + K+  
Sbjct: 324 VVYLQDAHWNPQVVQQAVDRL-----HRIGQAKPVRVFHVVTVQSIEQHLYNVQKRKAAR 378

Query: 191 QDLLL-------NALKKETIHV 205
              ++          K E + V
Sbjct: 379 AKRVITLTVPTEELEKAEALRV 400


>gi|325089926|gb|EGC43236.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 1211

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
            ++II                 L    + +            +  +NE   + +L      
Sbjct: 933  KIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTRSEYLSLFNETETVRVLLMDLRQ 992

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD        E   + R  +    + V+V  L+ + T+++
Sbjct: 993  AAHGLHI-ACASRVFIVNPIWDP-----NFESQAIKRAHRISQNKPVYVETLVLKGTLED 1046

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  + +  L   +K+ + 
Sbjct: 1047 RMLRR---RKQMSNAELRHAEKDPLD 1069


>gi|305680870|ref|ZP_07403677.1| helicase C-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659075|gb|EFM48575.1| helicase C-terminal domain protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 1168

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G          +++      L+     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 532 HGGTPRHLRQAIREQFAHDPRTLVLLATDAAGEGLNLQR-AHLMVNYDLPWNPNRIEQRF 590

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G +    ++ L+A NT +  V  RL  K  +   
Sbjct: 591 GRI-----HRIGQREVCHLWNLVAHNTREGDVFNRLLEKIEVMSE 630


>gi|222635335|gb|EEE65467.1| hypothetical protein OsJ_20857 [Oryza sativa Japonica Group]
          Length = 949

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 795 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 853

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 854 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 900


>gi|134298387|ref|YP_001111883.1| helicase domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051087|gb|ABO49058.1| helicase domain protein [Desulfotomaculum reducens MI-1]
          Length = 942

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           F   L R Q         T D     I+E+ E     +     S   G+NLQ+  +++V 
Sbjct: 460 FKEWLQRHQGQDIITGSPTADMRAALIEEFRERGT--ILIATESAAEGVNLQF-CSLVVN 516

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDL 193
           + L W+ +  +Q I R       + G K  V V   + + N  D+ V Q L  K  + D 
Sbjct: 517 YDLPWNPQRIEQRIGRC-----HRYGQKYDVVVVNFLNKRNAADQRVYQLLAEKFRLFDG 571

Query: 194 LLNA 197
           +  A
Sbjct: 572 VFGA 575


>gi|148262671|ref|YP_001229377.1| helicase domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396171|gb|ABQ24804.1| helicase domain protein [Geobacter uraniireducens Rf4]
          Length = 955

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            ++ D+    I+ + +     +     +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 487 SKSADRRNALIEHFRDHAS--IMIATEAAAEGVNLQF-CSLVVNYDLPWNPQRIEQRIGR 543

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                  + G +  V V   + + N  D+ V + L  K  +   +  A
Sbjct: 544 C-----HRYGQQHDVVVINFLNERNEADQRVYELLTAKFNLFSGVFGA 586


>gi|172039234|ref|YP_001805735.1| hypothetical protein cce_4321 [Cyanothece sp. ATCC 51142]
 gi|171700688|gb|ACB53669.1| hypothetical protein cce_4321 [Cyanothece sp. ATCC 51142]
          Length = 1072

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GR 92
           + +     + E I+ L+  + +      ++   + + L  L +   +             
Sbjct: 537 DLRKHDTKYQELIQCLKQKLAENPKEKFVLFAFYRNTLTYLAERLQEDGIEICLILGGMD 596

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             DK        +  +I +L +       G++LQ+    L+ + L W+    +Q I R+ 
Sbjct: 597 KEDKQDKLKSFQDNNQISVLLSS-EVGSEGIDLQF-CRFLINYDLPWNPMRVEQRIGRLD 654

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
              Q+       + +     ++TI+E +L+RL  +  I +  +  L++
Sbjct: 655 RLNQK----SETISIINFSLKDTIEEYILERLYERIHIFEESIGDLEE 698


>gi|145347826|ref|XP_001418362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578591|gb|ABO96655.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1432

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    ++    +L        HGLNL      ++      D       +E   + R 
Sbjct: 1286 RDVIDTFKHDAACNVLLLPLKRGAHGLNLTE-AQHVLLLEPVLDPG-----MEAQAIKRV 1339

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  R   V+    ++TI+E V    R ++     +
Sbjct: 1340 DRIGQTRPTCVHRFFIRDTIEENVHNFSRQRADAMSDI 1377


>gi|196035256|ref|ZP_03102662.1| helicase domain protein [Bacillus cereus W]
 gi|195992320|gb|EDX56282.1| helicase domain protein [Bacillus cereus W]
          Length = 1063

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
            Y E +         +   E I+    +   +            + A   G    +    
Sbjct: 469 KYQELEETLFGASGLLNHDEKILIFTESVDTLSYLEEKLLKRVPKIAKIIGSLSMEQRRK 528

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             E    +  ++ A   + G  +NLQ+  N ++ + + W+  + +Q + RI      + G
Sbjct: 529 QVEMFRNECQIMIAT-DAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI-----HRIG 581

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K  VFV+ L+AQNT +  V+ +L  K  +    L +
Sbjct: 582 QKNEVFVFNLVAQNTREGSVMTKLLDKMELMKSDLGS 618


>gi|50550555|ref|XP_502750.1| YALI0D12562p [Yarrowia lipolytica]
 gi|49648618|emb|CAG80938.1| YALI0D12562p [Yarrowia lipolytica]
          Length = 1098

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                    + ++    +  +       +L  +  +  HGLN+    + + F S      
Sbjct: 897 HLIYTTDKVSKERRAQYLATFEATDNFQVLLMNINAAAHGLNITS-ASWVFFLSP----- 950

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             ++ IE   + R  + G K  V V  L+ Q+T++E + +R
Sbjct: 951 VWRRDIEAQAIKRAHRIGQKSEVHVETLVLQDTLEEDIYRR 991


>gi|303283812|ref|XP_003061197.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226457548|gb|EEH54847.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1429

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 35/170 (20%)

Query: 30   VKCLQLANGAVYYDEEKHWKEVHDE--------KIKALEVIIEK--ANAAPIIVAYHFNS 79
            ++  +L N            E            K+  L+ ++ K  A+   +++      
Sbjct: 844  MELRKLCNHPALNYPIAKGGEWRSGPDLVRAGGKLWVLDRVLVKLRASGHRVLLFSTMTK 903

Query: 80   DLARLQKAFPQ-----------------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCG 120
             L  L+                         LD+    I ++NE      L      + G
Sbjct: 904  LLDLLEDYLKWRASTPICEGLEWCRIDGTTPLDEREVAITQFNERDSKKFLFLLSIRAAG 963

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
             GLNLQ   + +V +    + +      E   V R  + G KR V V + 
Sbjct: 964  RGLNLQT-ADTVVVYDPDPNPKN-----EEQAVARSHRIGQKREVKVMHF 1007


>gi|115453047|ref|NP_001050124.1| Os03g0352500 [Oryza sativa Japonica Group]
 gi|113548595|dbj|BAF12038.1| Os03g0352500 [Oryza sativa Japonica Group]
          Length = 214

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + R  + G  + V VY LI ++TI+E +LQR + K+ +Q+L++
Sbjct: 1   AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 44


>gi|34394721|dbj|BAC84084.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
          Length = 872

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +          D++    Q  N     +LF    +CG G++L  G + ++   + 
Sbjct: 721 HVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVH 779

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            +         R  + R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 780 LNPSVT-----RQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 826


>gi|146344261|ref|YP_001202117.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|146188073|emb|CAM96403.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 554

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                V   +N +LA+       G    K    + + +  G+  +L     S      LQ
Sbjct: 399 GWHRAVYDIWNEELAQWNPVMYTGSESPKQKEESKRRFLAGESNVLILSLRSGAGLDGLQ 458

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++++   L W  + H+         R  + G    V   +L++++  D  +++ L  
Sbjct: 459 ARCSVVLHGELDWSPKVHE-----QVTGRLDREGQPNPVLSIFLVSEDGSDPPIIELLGV 513

Query: 187 KST 189
           K+ 
Sbjct: 514 KAA 516


>gi|328875307|gb|EGG23672.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1175

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 7/140 (5%)

Query: 47   HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE 106
              K +   K+  L   +++      I             +     +   +    +    +
Sbjct: 957  QPKLIDSSKLDYLIKRLQELEK-KGIKLMAMKHAKLNFLQYHSNMKLKKRAMAILSFQTD 1015

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             +   +  +     +G+NL    N ++F           +  ER  + R  + G    V 
Sbjct: 1016 SQQHFIVMNTDLAAYGINLTA-ANHIIFVDQLTS-----EGKERQAIKRAHRIGQLNPVS 1069

Query: 167  VYYLIAQNTIDELVLQRLRT 186
            V  LI  NTI++++L  L  
Sbjct: 1070 VEKLIIPNTIEQMILSTLNH 1089


>gi|145481069|ref|XP_001426557.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393632|emb|CAK59159.1| unnamed protein product [Paramecium tetraurelia]
          Length = 746

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           +  +            ++++    +Q   N   I +      S  +G+ L    + +VF 
Sbjct: 440 YCVENNIQYMRIDGSVSIEQRHLNVQMFQNNEAIRIAILSVTSANYGITLTA-ASTIVFG 498

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W               R  + G  + V  +YLI   T+D+ +  ++  K       +
Sbjct: 499 EMHWTPAIMM-----QAEDRAHRIGQVQCVDCHYLIGDGTLDDHIFNKIENKMNTVSNFI 553

Query: 196 NALKK 200
           +  K+
Sbjct: 554 DGQKQ 558


>gi|219118546|ref|XP_002180043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408300|gb|EEC48234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 140

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++     + G GLNL    + +     WW+  +  Q + RI    Q        V V   
Sbjct: 66  VMLMSMGAGGEGLNLVA-ASSVFIADPWWNAAKEDQCVNRIHRIGQLSPV----VRVRKF 120

Query: 171 IAQNTIDELVLQRLRTKS 188
           +  ++++E +++    K 
Sbjct: 121 VVTDSVEERIVELQSRKK 138


>gi|328876957|gb|EGG25320.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 1814

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD---------PCTIQEWNEGKIP 110
              I +K     +I+   ++  L  + +A  +   + +                  +  I 
Sbjct: 1656 LCIFDKDPLQKVILFSQWSEVLEIVSRALAENGIVFERGDKGGQQFQASVALFRKDPTIQ 1715

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L        +GLN+      +       +       +E   + R  + G ++  +++  
Sbjct: 1716 VLLLPTKRGANGLNI-IEATHVFIVEPLLNPA-----VEAQAINRIHRFGQQKECYIHRF 1769

Query: 171  IAQNTIDELVLQRLRTKSTIQDL 193
            I +NTI+E ++Q LR K+  Q  
Sbjct: 1770 IIKNTIEEKIVQ-LREKNNNQSD 1791


>gi|328953052|ref|YP_004370386.1| helicase domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453376|gb|AEB09205.1| helicase domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1309

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +            +     + +   +I +L     +   GLNLQ G ++L+ F L W+  
Sbjct: 836 QYIDPKTFTLVGVEREEIKRRFLRSEIDILVCT-DAAAEGLNLQ-GADLLINFDLPWNPM 893

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + +Q I RI    Q+       V+V  L    + +E+V  RL ++ +   L++  
Sbjct: 894 KVEQRIGRIDRIGQK----YETVYVLNLCYAGSAEEIVYGRLLSRLSQIGLIVGG 944


>gi|225559892|gb|EEH08174.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
 gi|225559942|gb|EEH08224.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1209

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
            ++II                 L    + +            +  +NE   + +L      
Sbjct: 933  KIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTRSEYLSLFNETETVRVLLMDLRQ 992

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD        E   + R  +    + V+V  L+ ++T+++
Sbjct: 993  AAHGLHI-ACASRVFIVNPIWDP-----NFESQAIKRAHRISQNKPVYVETLVLKDTLED 1046

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIH 204
             +L+R   +  + +  L   +K+ + 
Sbjct: 1047 RMLRR---RKQMSNAELRHAEKDPLD 1069


>gi|109100917|ref|XP_001086469.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 isoform 2
           [Macaca mulatta]
 gi|109100919|ref|XP_001086594.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 isoform 3
           [Macaca mulatta]
          Length = 949

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 61/180 (33%), Gaps = 18/180 (10%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF---- 77
           A    +   K  Q    A+     +  +      I+ +  ++ ++     +V  H     
Sbjct: 675 AAKEMTTMDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLL-ESGREKFLVFAHHKVVL 733

Query: 78  ---NSDLARLQKAFPQ---GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGN 130
                +L R      +     +  +     Q++    +  +      +   GL      +
Sbjct: 734 DAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSAD 792

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++VF  L+W+              R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 793 LVVFAELFWNPGVLI-----QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 847


>gi|70944659|ref|XP_742238.1| DNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521100|emb|CAH78659.1| DNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 437

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++   +   +     F  +             +DK    I+ +  + KI +      +CG
Sbjct: 191 LLFCHHKLVMDEIDEFLKEKKLGFIRVDGLTPIDKREVYIKNFQSDEKIRIAILSITACG 250

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNL    N +VF  L+W   +  Q  +R              + ++YL+AQNTIDE+V
Sbjct: 251 VGLNLTA-ANTVVFGELYWVPGQMIQAEDRAHRIGTTHD----TINIHYLVAQNTIDEVV 305

Query: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
            + +  K       LN   +++++V
Sbjct: 306 WKIINRKWNTLTTALNG-AEDSLNV 329


>gi|255947902|ref|XP_002564718.1| Pc22g06920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591735|emb|CAP97980.1| Pc22g06920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1292

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDL----ARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
            K +  + II       +        DL     R   +     +  K           ++ 
Sbjct: 986  KFEKTDKIIIFYEHDNVAAWVEQGLDLIAVKFRTYASTASMGSNLKSENLSDFRQTHEVR 1045

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L        HGL++     + +      +    ++ +E   + R  + G KR V+V  L
Sbjct: 1046 VLLMSVKEASHGLHIPEASRMYIV-----NP-IWERNVESQAIKRAHRIGQKRPVYVETL 1099

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            +  +T++  +L R  +K+   +   +A K
Sbjct: 1100 VLGDTLEHRMLNR--SKNMTDEETKHAGK 1126


>gi|302757351|ref|XP_002962099.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
 gi|300170758|gb|EFJ37359.1| hypothetical protein SELMODRAFT_76516 [Selaginella moellendorffii]
          Length = 616

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            + +     +  N  K+        + G GL L    + ++F  + W   +         
Sbjct: 523 PVIRQSMVDKFQNNEKVRAAVLSIRAAGLGLTLTS-ASTVIFAEMSWTPGDLI-----QA 576

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
             R  + G + +V +YYL A +TID+ + 
Sbjct: 577 EDRAHRIGQRSSVNIYYLHAPDTIDDFIW 605


>gi|229824154|ref|ZP_04450223.1| hypothetical protein GCWU000282_01458 [Catonella morbi ATCC 51271]
 gi|229786508|gb|EEP22622.1| hypothetical protein GCWU000282_01458 [Catonella morbi ATCC 51271]
          Length = 398

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 38/203 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y   ++         +    N           AN               ++K+  +E+
Sbjct: 216 KEYKTLRKTRVL----NDEAFDNIPKLIHGLRYWAN--------------QEDKLSYIEM 257

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI----------QEWNEGKIPL 111
           +++  N   +I+ Y +  +  RL         L K    +            W   K  +
Sbjct: 258 LLQGTNRN-VIIFYQYKEEYERL---HEIALKLGKQIYVVNGKASHLPPRDIWQSLKSSV 313

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 S   G+ LQY  + +VF++  +  ++++Q + R       + G  + V VY   
Sbjct: 314 TLVQYQSGSSGIELQY-ASEVVFYTPTYSYQDYEQSLGR-----AYRNGQTKKVTVYQFE 367

Query: 172 AQNTIDELVLQRLRTKSTIQDLL 194
            Q+TI+  V + L  K      L
Sbjct: 368 TQHTIESEVWEALANKKDFSTQL 390


>gi|221068880|ref|ZP_03544985.1| helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713903|gb|EED69271.1| helicase domain protein [Comamonas testosteroni KF-1]
          Length = 929

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +++     P +    A+   GLNLQ+   IL  F L W+  + +Q I RI    QR 
Sbjct: 564 AAERKFRLKDGPRVLVCTAAGREGLNLQF-ARILFNFDLPWNPMDMEQRIGRIHRYGQRD 622

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                   VY L+  +TI+  +   L  K T     +  +  + 
Sbjct: 623 TAQ-----VYNLVLSDTIEGRIFLLLDEKLTEIARTVGKVDDQG 661


>gi|302387900|ref|YP_003823722.1| helicase domain protein [Clostridium saccharolyticum WM1]
 gi|302198528|gb|ADL06099.1| helicase domain protein [Clostridium saccharolyticum WM1]
          Length = 2632

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     ++   G+I +L       G G+N+Q     L    + W   +  Q
Sbjct: 2119 FIHDAKTDVQREQLFEKVRTGEIRILMGSTGKMGTGMNVQNKLVALHHLDVPWRPSDLIQ 2178

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      + ++  I +NT D  + Q L  K      ++
Sbjct: 2179 RNGRILR----QGNDNEEISIFNYITENTFDAYLWQILEQKQRYISQIM 2223


>gi|328849288|gb|EGF98471.1| hypothetical protein MELLADRAFT_95638 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            +     I+ A     I +   + D+           T ++     +  N+  I      
Sbjct: 61  WRCCMEWIKIALDCHGIGSGTLHGDMT----------THERTCQLNRFKNDNNIEAFIVS 110

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             + G GLN+    + +      W+ +  QQ I+R+      + G    V VY+++A  +
Sbjct: 111 IEAGGVGLNMT-CADEVYLMDAHWNPQIVQQAIDRL-----HRIGQTHPVKVYHVVAGQS 164

Query: 176 IDELVLQR 183
           +++ +   
Sbjct: 165 VEQHLFNV 172


>gi|291526662|emb|CBK92248.1| DNA methylase [Eubacterium rectale M104/1]
          Length = 2550

 Score = 55.9 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2168 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2227

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2228 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLIENKQRFISQVMTS 2274


>gi|328854834|gb|EGG03964.1| hypothetical protein MELLADRAFT_89789 [Melampsora larici-populina
           98AG31]
 gi|328855578|gb|EGG04704.1| hypothetical protein MELLADRAFT_88629 [Melampsora larici-populina
           98AG31]
 gi|328856061|gb|EGG05184.1| hypothetical protein MELLADRAFT_88297 [Melampsora larici-populina
           98AG31]
 gi|328859055|gb|EGG08165.1| hypothetical protein MELLADRAFT_84940 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 74  AYHFNSDLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
              F   +         G         T ++     +  N+  I        + G GLN+
Sbjct: 61  WRCFMEWIKIALDCHGIGSGTLHGDMTTHERTCQLNRFKNDNNIEAFIVSIEAGGVGLNM 120

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               + +      W+ +  QQ I+R+      + G    V VY+++A  ++++ +   
Sbjct: 121 T-CADEVYLMDAHWNPQIVQQAIDRL-----HRIGQTHPVKVYHVVAGQSVEQHLFNV 172


>gi|301321575|gb|ADK68965.1| Superfamily II DNA/RNA helicase, SNF2 family [Gordonia sp. KTR9]
          Length = 1136

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    +     +E+ + +   +     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 527 HGGVRRGERRVITEEFTKNRDVQILIATDAAGEGLNLQA-AHLMVNYDLPWNPNRIEQRF 585

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            RI      + G +    ++ L+A NT +  V  RL  K      
Sbjct: 586 GRI-----HRIGQEEVCRLWNLVASNTREGEVFTRLLEKLDQMRQ 625


>gi|289618275|emb|CBI54999.1| unnamed protein product [Sordaria macrospora]
          Length = 1110

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 77   FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            FN       +   +     +     +   +  + ++     + G GLNL    + +    
Sbjct: 971  FNDVGIIFTRLDGKMTRTARTAAMDKFREDPSVQVILVSIMAGGLGLNLTT-ASSVYVME 1029

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              ++     Q ++R+      + G KR V     I  N+ +E
Sbjct: 1030 PQFNPAAEAQAVDRV-----HRLGQKRPVRTVRYIMANSFEE 1066


>gi|313115788|ref|ZP_07801235.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621895|gb|EFQ05403.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 881

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G + +L    A  G G N+Q     +    + W   +  Q
Sbjct: 496 FIHNADTEAKKAALFSKVRSGDVRVLLGSTAKMGAGTNVQSQLVAVHHLDVGWKPSDMTQ 555

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V V+  + + T D  + Q L  K      ++ +
Sbjct: 556 RNGRIIR----QGNMNKEVKVFNYVTEGTFDSYLFQTLENKQRFISQIMTS 602


>gi|171691588|ref|XP_001910719.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945742|emb|CAP71855.1| unnamed protein product [Podospora anserina S mat+]
          Length = 381

 Score = 55.9 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           + +                  I  +     IP+L     S   GL +    N++      
Sbjct: 281 ECSLPFLRIDGMVNATDRTAIIDNFSTNPDIPVLLLTINSGAVGLTITA-ANVVHLVEPI 339

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           ++       IE   V R  + G  R V +   + + TI+
Sbjct: 340 YNPA-----IEAQAVARVLRMGQTRPVKILRYVTEETIE 373


>gi|260818236|ref|XP_002604289.1| hypothetical protein BRAFLDRAFT_125252 [Branchiostoma floridae]
 gi|229289615|gb|EEN60300.1| hypothetical protein BRAFLDRAFT_125252 [Branchiostoma floridae]
          Length = 1645

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 40   VYYDEEKHWKEVHDEKI----KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
                E+   K  H  K+    + L++I +K   A  +V   +   L  +  A  +     
Sbjct: 1425 AKQQEDVDVKGSHSTKVEAVVRTLKLIRQKDPTAKSLVFSTWQDVLDVVATALRENNMEY 1484

Query: 96   KDPCTIQEWN--------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            +    I  +         +  I +L     +  HGLN+      ++      +  +    
Sbjct: 1485 RAINGIHRFQENITDFKYDSGIGVLLLPLHTGSHGLNI-IEATHVLLVEPIINPAQ---- 1539

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             E   + R  + G  +A  V+  + QNTI+E +   
Sbjct: 1540 -EAQAIGRVHRIGQTKATVVHRFLVQNTIEERIHAM 1574


>gi|222624012|gb|EEE58144.1| hypothetical protein OsJ_09059 [Oryza sativa Japonica Group]
          Length = 822

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 54/230 (23%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEV 51
           K Y    ++EL       G      +  +  ++  + ++    +         E      
Sbjct: 308 KLYLSVLRKELQTLLTFTGGLSRHQSLQNIVIQLRKASSHPYLFSGIEPEPYVEGEHLVQ 367

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++I++K +     +++       L  LQ      +   +             
Sbjct: 368 ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGSVRAEERFA 427

Query: 98  ----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        +++ N+    +      + G GLNL  G + ++F+   W+ +     
Sbjct: 428 AIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA---- 482

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + R  + G    V              +++R   K  +   ++  
Sbjct: 483 -DKQALQRAHRIGQLNNV--------------IMRRAERKLKLSHSVIGE 517


>gi|222622622|gb|EEE56754.1| hypothetical protein OsJ_06290 [Oryza sativa Japonica Group]
          Length = 148

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 95  DKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           D     + ++N      +LF    +CG G++L  G + ++   +  +         R  +
Sbjct: 9   DDREVAMDQFNNSADAKVLFGSIKACGEGISL-VGASRVIILDVHLNPSVT-----RQAI 62

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            R  + G ++ VFVY L+A ++ +    +    K  I
Sbjct: 63  GRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI 99


>gi|75812876|ref|YP_320493.1| helicase-like [Anabaena variabilis ATCC 29413]
 gi|75705632|gb|ABA25304.1| Helicase-like protein [Anabaena variabilis ATCC 29413]
          Length = 840

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           F  G + ++       +N         +     +   G+NLQ     L  F + W+    
Sbjct: 318 FHGGMSEERREAIKLAFNTDPSRHPLRILIATDAAREGVNLQNNCADLFHFDVPWNPSRM 377

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +Q   RI    QR       V  YY       ++ VL  L  K+      L +L
Sbjct: 378 EQRNGRIDRKLQRSPI----VRCYYFALPQRAEDRVLDILIKKTATIQKELGSL 427


>gi|260666103|gb|ACX47901.1| Dbuz/Dlh [Drosophila buzzatii]
          Length = 517

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 66/236 (27%), Gaps = 57/236 (24%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------------------- 41
            Y+K + +   DL  E     +   +T +  QL +                         
Sbjct: 268 LYNKVRSK--LDLCVETRTMIH-LVRTQRLQQLCSHPYLIRSLNIIDQNEYEGESTFDCS 324

Query: 42  ---------YDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFP 89
                           +     KI     II +        IIV     + L  L K   
Sbjct: 325 DTSDENVLSLRNPIFHRNTPSTKISRAIEIINEHVLLEKKKIIVVSQSVALLEILNKHLY 384

Query: 90  QGRT-------------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           +  T               K    I ++NE   P +               G   L+F  
Sbjct: 385 KDSTRQLKIMTLTGRTPQHKIGELISDFNESVKPCILLISLKLAETGLNLNGAKYLLFMD 444

Query: 137 LWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           L W+     Q  I R+             V V+  + ++T+D+ + Q  +TK ++ 
Sbjct: 445 LHWNPHLEPQSAIHRL-------GQQNENVIVFQFVCKDTVDDHIQQVQQTKLSLA 493


>gi|226290023|gb|EEH45507.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1252

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            I  +               L    + +            +  +N  + + +L        
Sbjct: 922  IFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSDRSAYLALFNTTELVRVLLMDLRQAS 981

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            HGL++    + +   +  WD       +E   + R  +    + V+V  L+ +NT+++ +
Sbjct: 982  HGLDI-PCASRVFIVNPIWDP-----NVESQAIKRAHRISQGKPVYVETLVLKNTLEDKM 1035

Query: 181  LQRLRTKSTIQDLLLNALKKETIH 204
            L+R   +  + +  L   +K+ + 
Sbjct: 1036 LRR---RKQMSNAELRHAEKDPLD 1056


>gi|225682607|gb|EEH20891.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1275

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCG 120
            I  +               L    + +            +  +N  + + +L        
Sbjct: 945  IFYEEGGNSGWYIAEALEILGVEFRIYSNTLKTSDRSAYLALFNTTELVRVLLMDLRQAS 1004

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            HGL++    + +   +  WD       +E   + R  +    + V+V  L+ +NT+++ +
Sbjct: 1005 HGLDI-PCASRVFIVNPIWDP-----NVESQAIKRAHRISQGKPVYVETLVLKNTLEDKM 1058

Query: 181  LQRLRTKSTIQDLLLNALKKETIH 204
            L+R   +  + +  L   +K+ + 
Sbjct: 1059 LRR---RKQMSNAELRHAEKDPLD 1079


>gi|228482586|gb|ACQ43545.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482588|gb|ACQ43546.1| brahma-like protein [Anopheles arabiensis]
 gi|228482590|gb|ACQ43547.1| brahma-like protein [Anopheles arabiensis]
 gi|228482592|gb|ACQ43548.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482594|gb|ACQ43549.1| brahma-like protein [Anopheles gambiae S]
 gi|228482596|gb|ACQ43550.1| brahma-like protein [Anopheles gambiae S]
 gi|228482598|gb|ACQ43551.1| brahma-like protein [Anopheles gambiae S]
 gi|228482600|gb|ACQ43552.1| brahma-like protein [Anopheles gambiae S]
 gi|228482602|gb|ACQ43553.1| brahma-like protein [Anopheles gambiae S]
 gi|228482604|gb|ACQ43554.1| brahma-like protein [Anopheles gambiae S]
 gi|228482606|gb|ACQ43555.1| brahma-like protein [Anopheles gambiae S]
 gi|228482608|gb|ACQ43556.1| brahma-like protein [Anopheles gambiae M]
 gi|228482610|gb|ACQ43557.1| brahma-like protein [Anopheles gambiae S]
 gi|228482612|gb|ACQ43558.1| brahma-like protein [Anopheles gambiae S]
 gi|228482614|gb|ACQ43559.1| brahma-like protein [Anopheles gambiae M]
 gi|228482616|gb|ACQ43560.1| brahma-like protein [Anopheles gambiae S]
 gi|228482618|gb|ACQ43561.1| brahma-like protein [Anopheles gambiae M]
 gi|228482620|gb|ACQ43562.1| brahma-like protein [Anopheles gambiae M]
 gi|228482622|gb|ACQ43563.1| brahma-like protein [Anopheles gambiae S]
 gi|228482624|gb|ACQ43564.1| brahma-like protein [Anopheles gambiae S]
 gi|228482626|gb|ACQ43565.1| brahma-like protein [Anopheles gambiae M]
 gi|228482628|gb|ACQ43566.1| brahma-like protein [Anopheles gambiae S]
 gi|228482630|gb|ACQ43567.1| brahma-like protein [Anopheles gambiae M]
 gi|228482632|gb|ACQ43568.1| brahma-like protein [Anopheles gambiae M]
 gi|228482634|gb|ACQ43569.1| brahma-like protein [Anopheles gambiae M]
 gi|228482636|gb|ACQ43570.1| brahma-like protein [Anopheles gambiae M]
 gi|228482638|gb|ACQ43571.1| brahma-like protein [Anopheles gambiae M]
 gi|228482640|gb|ACQ43572.1| brahma-like protein [Anopheles gambiae M]
 gi|228482642|gb|ACQ43573.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482644|gb|ACQ43574.1| brahma-like protein [Anopheles arabiensis]
 gi|228482646|gb|ACQ43575.1| brahma-like protein [Anopheles arabiensis]
 gi|228482648|gb|ACQ43576.1| brahma-like protein [Anopheles quadriannulatus]
 gi|228482650|gb|ACQ43577.1| brahma-like protein [Anopheles gambiae S]
 gi|228482652|gb|ACQ43578.1| brahma-like protein [Anopheles gambiae S]
 gi|228482654|gb|ACQ43579.1| brahma-like protein [Anopheles gambiae S]
 gi|228482656|gb|ACQ43580.1| brahma-like protein [Anopheles gambiae S]
 gi|228482658|gb|ACQ43581.1| brahma-like protein [Anopheles gambiae S]
 gi|228482660|gb|ACQ43582.1| brahma-like protein [Anopheles gambiae S]
 gi|228482662|gb|ACQ43583.1| brahma-like protein [Anopheles gambiae S]
 gi|228482664|gb|ACQ43584.1| brahma-like protein [Anopheles gambiae M]
 gi|228482666|gb|ACQ43585.1| brahma-like protein [Anopheles gambiae S]
 gi|228482668|gb|ACQ43586.1| brahma-like protein [Anopheles gambiae S]
 gi|228482670|gb|ACQ43587.1| brahma-like protein [Anopheles gambiae M]
 gi|228482672|gb|ACQ43588.1| brahma-like protein [Anopheles gambiae S]
 gi|228482674|gb|ACQ43589.1| brahma-like protein [Anopheles gambiae M]
 gi|228482676|gb|ACQ43590.1| brahma-like protein [Anopheles gambiae M]
 gi|228482678|gb|ACQ43591.1| brahma-like protein [Anopheles gambiae S]
 gi|228482680|gb|ACQ43592.1| brahma-like protein [Anopheles gambiae S]
 gi|228482682|gb|ACQ43593.1| brahma-like protein [Anopheles gambiae M]
 gi|228482684|gb|ACQ43594.1| brahma-like protein [Anopheles gambiae S]
 gi|228482686|gb|ACQ43595.1| brahma-like protein [Anopheles gambiae M]
 gi|228482688|gb|ACQ43596.1| brahma-like protein [Anopheles gambiae M]
 gi|228482690|gb|ACQ43597.1| brahma-like protein [Anopheles gambiae M]
 gi|228482692|gb|ACQ43598.1| brahma-like protein [Anopheles gambiae M]
 gi|228482694|gb|ACQ43599.1| brahma-like protein [Anopheles gambiae M]
 gi|228482696|gb|ACQ43600.1| brahma-like protein [Anopheles gambiae M]
          Length = 270

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 36/190 (18%)

Query: 3   QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
            Y   Q +      G               +  V+  +L N    +   +     H    
Sbjct: 82  LYKHMQSKGVLLTDGSEKGNKGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHIGVQ 141

Query: 53  -----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ--------- 90
                        K + L+ I+ K       +++       +  ++              
Sbjct: 142 GTVTGPDLYRASGKFELLDRILPKLKATGHRVLLFCQMTQCMTIIEDYLSWRGFGYLRLD 201

Query: 91  -GRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                ++    ++++N              + G GLNLQ   + +V F   W+  +  Q 
Sbjct: 202 GTTKSEERGDLLKKFNSKNSDYFLFLLSTRAGGLGLNLQT-ADTVVIFDSDWNPHQDLQA 260

Query: 148 IERIGVTRQR 157
            +R     QR
Sbjct: 261 QDRAHRIGQR 270


>gi|270015594|gb|EFA12042.1| hypothetical protein TcasGA2_TC001459 [Tribolium castaneum]
          Length = 552

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 31/82 (37%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
             P        +       +       L +   M++     R  + G  + V VY L+ +
Sbjct: 409 LTPVQKYLYRAILADDTDALNMLKSTKLTDENPMVDLQAQDRCHRIGQTKPVMVYSLVTK 468

Query: 174 NTIDELVLQRLRTKSTIQDLLL 195
            TIDE++L R   K  +  +++
Sbjct: 469 GTIDEIILNRADVKKRLGKVVI 490


>gi|30250238|ref|NP_842308.1| Snf2/Rad54 family helicase [Nitrosomonas europaea ATCC 19718]
 gi|30181033|emb|CAD86223.1| possible helicase (Snf2/Rad54 family) [Nitrosomonas europaea ATCC
           19718]
          Length = 965

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E     +     +   G+NLQ+  ++
Sbjct: 467 QAIYKDWLQRHEGSDRITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSL 523

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   + + N  D  V Q L  K  +
Sbjct: 524 VINYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYQLLSQKFKL 578

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 579 FEGVFGA 585


>gi|291536748|emb|CBL09860.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2550

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2168 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2227

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2228 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2274


>gi|171677999|ref|XP_001903950.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937068|emb|CAP61727.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2308

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 36   ANGAVYYDEEKHWKEVHDE----KIKALEVIIEKA--NAAPIIVAYHFNS---------- 79
             +  +         E++D     K+  +  +I+        ++V   + S          
Sbjct: 2104 CSSFIKERPVIPCTELNDNVKMSKVDHMMELIKSIIAKDERVLVFGQYQSYLEKLWSRIK 2163

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            ++           +       ++++  G    ++  +  +     +     N ++F + +
Sbjct: 2164 EIDPKATNLALVTSSRDTSAMLEKFKSGTGGNVMLLNIDNDTSAGSNLTVANHIIFANPY 2223

Query: 139  WDLEEHQQMIE-RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +   +H Q I  R    R  + G  + V+VY+ +  +T ++ +L+
Sbjct: 2224 FHPNKHHQAITVRQAKGRCLRYGQMKTVYVYHFMMAHTDEDRLLR 2268


>gi|328848391|gb|EGF97611.1| hypothetical protein MELLADRAFT_84825 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 74  AYHFNSDLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
              F   +         G         T ++     +  N   I        + G GLN+
Sbjct: 61  WRCFMEWIKIALDCHGIGSGTLHGDMTTHERTCQLNRFKNNNNIEAFIVSIEAGGVGLNM 120

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               + +      W+ +  QQ I+R+      + G    V VY+++A  ++++ +   
Sbjct: 121 T-CADEVYLMDAHWNPQIVQQAIDRL-----HRIGQTHPVKVYHVVAGQSVEQHLFNV 172


>gi|15964256|ref|NP_384609.1| putative helicase protein [Sinorhizobium meliloti 1021]
 gi|15073432|emb|CAC41940.1| Helicase-DNA-binding protein [Sinorhizobium meliloti 1021]
          Length = 1170

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   D+       +     + +L A   + G G+NLQ   N++V + L W+    +Q 
Sbjct: 533 HGGTHRDERRRLQALFRSDLDVRVLVAT-DAAGEGVNLQN-ANLMVNYDLPWNPNRLEQR 590

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A+ T +  V  RL  K  ++   L+ 
Sbjct: 591 FGRI-----HRIGQTEVCHLWNLVAKETREGDVYHRLLLKLEVESQALHG 635


>gi|217969386|ref|YP_002354620.1| SNF2-related protein [Thauera sp. MZ1T]
 gi|217506713|gb|ACK53724.1| SNF2-related protein [Thauera sp. MZ1T]
          Length = 975

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 91  GRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +D+    I  +   +G    +     +   G+NLQ+   +++ + L W+ +  +Q I
Sbjct: 502 SPQVDRRTALIDHFRKDDGTGAEIMIATEAAAEGVNLQFCA-LIINYDLPWNPQRVEQRI 560

Query: 149 ERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
            R       + G +  V V   +  +N  D+ VL+ L  K  +   +  A
Sbjct: 561 GRC-----HRYGQRFDVVVINFLNTRNQADQRVLELLTEKFNLFSGVFGA 605


>gi|330987023|gb|EGH85126.1| helicase domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1178

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G   D+     +E+      L+     + G G+NLQ   N++V + L W+    +Q  
Sbjct: 545 HGGTNRDERRMIQEEFRNNPNVLVLIATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQRF 603

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            RI      + G      ++ ++A  T +  V Q+L  K  I+   L  
Sbjct: 604 GRI-----HRIGQTEVCHLWNIVANETREGEVFQKLFDKMEIEKQALGG 647


>gi|330959670|gb|EGH59930.1| putative helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 554

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
                V   +N +LA+       G    K    + + +  G+  +L     S      LQ
Sbjct: 399 GWHRAVYDIWNEELAQWNPVMYTGSESPKQKEESKRRFLAGESNVLILSLRSGAGLDGLQ 458

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++++   L W  + H+         R  + G    V   +LI+ +  D  +++ L  
Sbjct: 459 ARCSVVLHGELDWSPKVHE-----QVTGRLDREGQPNPVLSIFLISADGSDPPIIELLGV 513

Query: 187 KST 189
           K+ 
Sbjct: 514 KAA 516


>gi|118372610|ref|XP_001019500.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89301267|gb|EAR99255.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 731

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F +D  +           ++    +Q + N   I +      +   G+ L    + ++F 
Sbjct: 456 FANDRKKKYIRIDGSVRDEEKSIRVQSFENNKNISIAILSFGAASLGITLTS-ASNILFA 514

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            + W        I      R  + G K  V  +YLI + T+D ++ +++  K  I   +L
Sbjct: 515 EMHWTPA-----IMEQAEDRAHRIGQKNPVTCHYLIGEGTLDNMLYKKILEKQQIVGAIL 569

Query: 196 NA 197
           + 
Sbjct: 570 DG 571


>gi|321261139|ref|XP_003195289.1| DNA supercoiling [Cryptococcus gattii WM276]
 gi|317461762|gb|ADV23502.1| DNA supercoiling, putative [Cryptococcus gattii WM276]
          Length = 586

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 19/179 (10%)

Query: 15  LQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
           L    I A +   +  K   Q   G          K    +    L+ I+        ++
Sbjct: 387 LNEARINAVSIGKQVPKPIRQ---GPRPLPLTIVTKSRSAKVNFILQAILNAPKDDRFVI 443

Query: 74  A---------YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                           L            +      +  +    + +          GLN
Sbjct: 444 FGNNYELGHLTEALDLLDIASTFVGHTLHVQNRRLALDYFETPGVRVCLMDLKLAARGLN 503

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           L    N ++F    W        I+   + R  + G  R   V  L+ + T +E + +R
Sbjct: 504 LVN-ANRVIFLGPVWS-----SDIQAQAIKRVHRIGQTRPTLVQILVTEGTFEEDIARR 556


>gi|325107709|ref|YP_004268777.1| helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967977|gb|ADY58755.1| helicase domain protein [Planctomyces brasiliensis DSM 5305]
          Length = 939

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  L+      +E+++     +     + G GLNLQ+  +++V + L W+    +Q
Sbjct: 517 CLNGSMDLESRQRVQREFSQDAR--ILISTDAGGEGLNLQF-AHVIVNYDLPWNPMRIEQ 573

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            I R+      + G K  V  + +I  N+++  V Q L  K  
Sbjct: 574 RIGRVD-----RIGQKHRVKAFNMIFANSVELRVHQVLEEKLK 611


>gi|297623430|ref|YP_003704864.1| helicase domain-containing protein [Truepera radiovictrix DSM
           17093]
 gi|297164610|gb|ADI14321.1| helicase domain protein [Truepera radiovictrix DSM 17093]
          Length = 1160

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ 85
            +   +   LA        ++ W+E+     ++ E++  + +   +++       L  LQ
Sbjct: 460 IAILKRLEALAARVKQSGTDRKWEELSRLLQESSEMLSPEGSRRKLVIFTEHRDTLLYLQ 519

Query: 86  KA-------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
           +                 G   ++       + + K  L+     + G G+NLQ   +++
Sbjct: 520 ERVTRLLGRPEAVVAIHGGTGREERGKVQATFTQNKDVLVLLATDAAGEGINLQR-AHLM 578

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           V + L W+    +Q   RI      + G      ++ L+AQ T +  V +RL  K   + 
Sbjct: 579 VNYDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWNLVAQETREGDVFKRLFDKLERER 633

Query: 193 LLLNA 197
             L  
Sbjct: 634 EALGG 638


>gi|254422766|ref|ZP_05036484.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196190255|gb|EDX85219.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1051

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 15/161 (9%)

Query: 49  KEVHDEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP---------QGRTLDKDP 98
           ++    K+K      + K +A   ++  +F   L  L +             G   D+  
Sbjct: 526 QDSKYNKLKDFLDSELAKDSAQKFVIFAYFRGTLKYLARRLNAAGISTGLIMGDMGDRKW 585

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +Q++ + + P +         G++LQ+    LV + L W+    +Q I R+    Q+ 
Sbjct: 586 EVVQQFRQPEGPSVLLSSEVGSEGIDLQH-CRFLVNYDLPWNPMRVEQRIGRLDRLNQK- 643

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 + +     ++T++  +L+RL  +  I +  +  ++
Sbjct: 644 ---AERISIVNFSLKDTVEAEILERLYKRIRIFEESVGDIE 681


>gi|124801328|ref|XP_001349665.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845262|gb|AAC71935.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
          Length = 1997

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +      S   GLNLQ   + ++ F   ++  +     +   + R  + G K  V V+  
Sbjct: 1405 IFILSTRSGSLGLNLQT-ADTVIIFDSDFNPHQ-----DIQAMCRCHRIGQKNVVKVFRF 1458

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNA 197
            I  + ++ELV ++ + K +I D ++ A
Sbjct: 1459 ITLSGVEELVFKKAQHKLSINDKVIQA 1485


>gi|331013605|gb|EGH93661.1| SNF2-related:helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 316

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 36/191 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
           + +R+   +         +  ++     QL               +   K++ +  ++ +
Sbjct: 148 QVERD---EYNQIMRSDTHRFARLGALRQL---------------LERVKVRIVADLMAE 189

Query: 66  AN-AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQ-EWNEGKIPLLF 113
            +    +I+   +   +A L++                +  K    I     +    +  
Sbjct: 190 LDVDDKVILFCEYQESVASLREHCLAMGVGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFI 249

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              ++ G G NL    N + F  L W               R  + G  R V V   +A+
Sbjct: 250 GTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAE 303

Query: 174 NTIDELVLQRL 184
           +TID+ + Q L
Sbjct: 304 DTIDQQLWQML 314


>gi|295090193|emb|CBK76300.1| DNA methylase [Clostridium cf. saccharolyticum K10]
          Length = 2605

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2221 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2280

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V V+  + + T D  + Q +  K      ++ +
Sbjct: 2281 RKGRIER----QGNQNETVHVFRYVTEGTFDAYLWQTVENKQKFISQIMTS 2327


>gi|28868866|ref|NP_791485.1| helicase/SNF2 family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852105|gb|AAO55180.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 805

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                +    I+ + +           + G G+NLQ   +++V + L W+     Q I R
Sbjct: 427 SMRHAERREAIKRFEQQAR--FLISTEAGGEGINLQNQCHVMVNYDLPWNPMRLVQRIGR 484

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +      + G K+ V V+ +   +++D+ ++  +  +  
Sbjct: 485 L-----YRYGQKKKVVVFNIQQTDSLDQNIVDLMYERID 518


>gi|291525613|emb|CBK91200.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2510

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2128 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2187

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2188 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|255019266|ref|ZP_05291392.1| Superfamily II DNA and RNA helicase [Listeria monocytogenes FSL
           F2-515]
          Length = 171

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 4/109 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +     ++   G++ +L       G G N+Q            W   +  Q
Sbjct: 60  FIHDCNNDQQRETLFEKVRRGEVRVLLGSTGKLGTGTNVQNKLIAGHHIDCPWRPSDLTQ 119

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              R+      Q      V +Y  + + T D  + Q    K      ++
Sbjct: 120 RDGRVVR----QGNENDEVQLYRYVTKGTFDSYLWQIQEQKLKYISQVM 164


>gi|291086945|ref|ZP_06571733.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076446|gb|EFE13810.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 2527

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2145 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2204

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2205 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2251


>gi|210610421|ref|ZP_03288401.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
 gi|210152498|gb|EEA83504.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
          Length = 2510

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2128 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2187

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2188 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 2234


>gi|240103680|ref|YP_002959989.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
 gi|239911234|gb|ACS34125.1| Type III restriction endonuclease, res subunit [Thermococcus
           gammatolerans EJ3]
          Length = 1100

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 26/170 (15%)

Query: 49  KEVHDEKIKALEVIIEKANAAP--IIVAYHFNSDLAR-------------LQKAFPQGRT 93
           +E   +K++     I + +     I++   F   L                        T
Sbjct: 464 EETKLKKLRETLDFIAREHGEKEKILIFTEFKDTLEYLVNKLQEWGYTVTFIHGEMDMET 523

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +     +EW      ++ A  A+   G+NLQ+  ++L+ + + W+    +Q I R+  
Sbjct: 524 RLQREKDFREW----AQVMVATEAAG-EGINLQF-CHLLINYDIPWNPNRLEQRIGRV-- 575

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               + G +  V ++  +A+NT + +VL+RL  K       L     + I
Sbjct: 576 ---HRYGQRYPVHIFNFVARNTREGMVLERLLHKIEEIRKALGDKVFDVI 622


>gi|195108187|ref|XP_001998674.1| GI23502 [Drosophila mojavensis]
 gi|193915268|gb|EDW14135.1| GI23502 [Drosophila mojavensis]
          Length = 120

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 90  QGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQM 147
              T      TI+ +NE   P +L         GLNL YG N L+     W+     Q  
Sbjct: 1   MTLTSSNTQDTIKNFNESDEPCVLLLTLGLAKSGLNL-YGANSLLVMDSHWNPHLKPQSA 59

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I R+           R V VY L+ ++T+D  + Q  + K  +   +L A
Sbjct: 60  IYRMDQR-------NRNVSVYQLVCKDTVDGTIQQVQQNKLNLAFQVLRA 102


>gi|145295759|ref|YP_001138580.1| hypothetical protein cgR_1685 [Corynebacterium glutamicum R]
 gi|140845679|dbj|BAF54678.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 892

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 15/135 (11%)

Query: 67  NAAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
           +    ++  +F             R+           K    +    +      L A   
Sbjct: 714 HGRKALIFTYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQIT 773

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GLN+Q   ++ +           Q       V R  + G    V V+ LI   T D
Sbjct: 774 AGGVGLNIQS-ASLCIICEPQVKPTIEQ-----QAVARVHRMGQTATVQVHRLIGDETAD 827

Query: 178 ELVLQRLRTKSTIQD 192
           E +L+ L  K+ + D
Sbjct: 828 ERMLEILAGKTHVFD 842


>gi|293373681|ref|ZP_06620028.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292631336|gb|EFF49967.1| SNF2 family N-terminal domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 695

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 38/205 (18%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIE--KANAAPIIVAY 75
            N     +   +++     YD      +++       +++A    ++  K     +I+  
Sbjct: 477 PNMLVTIMNLREVSEHPYLYDSALTTHDINELVSTSARLQATIKFLDSIKEKEEKVIIFV 536

Query: 76  HFNSDLARLQKAFP--------------------QGRTLDKDPCTIQEWNE-GKIPLLFA 114
                   LQK                                 +I E+       ++  
Sbjct: 537 ERKETQKMLQKLCNERYGIICKIINGDTPSIIKRHSFDRQTRQASINEFQAVDGFNVIIM 596

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ- 173
            P + G GLN+    N ++ +S  W+  +     E     R  + G  + V+VYY +A  
Sbjct: 597 SPVAAGMGLNVTA-ANHVIHYSRHWNPAK-----ESQATDRAYRIGQTKDVYVYYPMAVT 650

Query: 174 ---NTIDELVLQRLRTKSTIQDLLL 195
               T DE++   L  K+++    +
Sbjct: 651 SDIKTFDEILDDLLSRKTSLATSTI 675


>gi|156034667|ref|XP_001585752.1| hypothetical protein SS1G_13268 [Sclerotinia sclerotiorum 1980]
 gi|154698672|gb|EDN98410.1| hypothetical protein SS1G_13268 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1092

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 48   WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
              ++    I    ++  +A      +A               +  T ++  C ++  +  
Sbjct: 877  MDQIFLHHILEKIIVFYEAENVGYYIAQALKCMNVEHLLYSKRDSTSERSKCVVKFNSLP 936

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               ++         GL++    + + F +  +  +     IE   + R  + G    V V
Sbjct: 937  NFRVMLMDVNQAAFGLDM-SAASRVYFVNPVFSPQ-----IEEQAIKRAHRIGQLHPVHV 990

Query: 168  YYLIAQNTIDELVLQR 183
              L+ + +I+E++L R
Sbjct: 991  ETLVLKGSIEEVILTR 1006


>gi|254805307|ref|YP_003083528.1| putative DEAD/DEAH box helicase [Neisseria meningitidis alpha14]
 gi|254668849|emb|CBA06913.1| putative DEAD/DEAH box helicase [Neisseria meningitidis alpha14]
          Length = 932

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           + + L R +        +T D     ++ + E     +     +   G+NLQ+  ++++ 
Sbjct: 446 YKNWLKRHEGSDKITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSLIIN 502

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDL 193
           + L W+ +  +Q I R       + G K  V V   + + N  D+ V + L  K  + D 
Sbjct: 503 YDLPWNPQRVEQRIGRC-----HRYGQKHDVVVVNFVDETNEADQRVYELLEQKFKLFDG 557

Query: 194 LLNA 197
           +  A
Sbjct: 558 VFGA 561


>gi|147841648|emb|CAN75315.1| hypothetical protein VITISV_024158 [Vitis vinifera]
          Length = 1904

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 43/205 (20%)

Query: 7    FQRELYCDLQGENIEAFN------SASKTVKCL------QLANGAVYYDEEKHWKEVHDE 54
            F RE   +L+    +           S   +C+       +    +              
Sbjct: 1630 FSREELLELKKHKDDVKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKLY 1689

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLL 112
            K K  E ++       +                        +    + ++ E  G   +L
Sbjct: 1690 KWKKGEDVLVLQGDLELF-----------------------ERGRVMDQFEEPGGASKVL 1726

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             A   +C  G++L    + ++     W+  +      +  V R  + G +R V+VY L+ 
Sbjct: 1727 LASITACAEGISLTA-ASRVILLDTEWNPSKQ-----KQAVARAFRPGQERVVYVYQLLE 1780

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNA 197
             +T++E    R   K  +  ++ + 
Sbjct: 1781 TDTLEEEKNSRTNWKEWVSSMIFSE 1805


>gi|71001130|ref|XP_755246.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66852884|gb|EAL93208.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159129330|gb|EDP54444.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 2115

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 7/157 (4%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLA-----RLQKAFPQGR 92
            A    EE    +    K+  L  I+++  N    I+   F   +                
Sbjct: 1924 ASLGFEEDRSTQYGGRKMDKLVEIVKEIPNQERAILFIQFPELIDVASKAFDLAKITHAV 1983

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERI 151
               +D   I+E+ +G   +      S           N ++F S      ++        
Sbjct: 1984 ITARDTKKIEEFKKGNEKVAILQLGSETAAGLNLQCTNHVIFLSPMLAETQYDYDSSMTQ 2043

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + R  + G  R V VY+L+ + TID  +LQ  R K 
Sbjct: 2044 AIGRALRYGQTRRVHVYHLLMKRTIDVNILQERRGKI 2080


>gi|124262809|ref|YP_001023279.1| SNF2 family DNA/RNA helicase [Methylibium petroleiphilum PM1]
 gi|124262055|gb|ABM97044.1| superfamily II DNA/RNA helicases SNF2 family-like protein
           [Methylibium petroleiphilum PM1]
          Length = 585

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 43/140 (30%), Gaps = 5/140 (3%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            + A E  +        + A    +        +    +  +       +  G   ++  
Sbjct: 406 MVLASEEKVIVFAWHREVYALLMEALAEFKPVMYTGSESPRQKEEAKNAFINGDARVMLM 465

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +      LQ+   + +F  L W    H Q I R       +         Y+L+A++
Sbjct: 466 SLRAGAGTDGLQHVCKVGIFAELDWSPGVHVQCIGRF-----HRDEQDEPSMAYFLLAED 520

Query: 175 TIDELVLQRLRTKSTIQDLL 194
             D ++   +  K T  + +
Sbjct: 521 GSDPVIADIVGLKKTQLEGV 540


>gi|330920074|ref|XP_003298878.1| hypothetical protein PTT_09713 [Pyrenophora teres f. teres 0-1]
 gi|311327723|gb|EFQ93020.1| hypothetical protein PTT_09713 [Pyrenophora teres f. teres 0-1]
          Length = 1280

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 53   DEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTI 101
              K+  L   + +      II+ Y  +     + +         +              +
Sbjct: 1009 SSKLTYLLDKVMQHQATEKIIIFYDGDDAAFYIAQCLELMYVNHRIYARTLNNTLRSEYV 1068

Query: 102  QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +NE   + +L    A    GLNL    ++++  +            E   + R  + G
Sbjct: 1069 RLFNEHPDVRVLLIDVACGALGLNL-NAASVVLIVNPINRPGL-----EAQAIKRSHRIG 1122

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + V V  L+ +NTI+  +  R   K +  D
Sbjct: 1123 QTKEVIVETLVLENTIEHAIFNRA-KKMSRAD 1153


>gi|320588566|gb|EFX01034.1| snf2 family helicase [Grosmannia clavigera kw1407]
          Length = 935

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 10/140 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----PCTIQEWNEGK 108
           D  I+ L  +         IV   F   L  L +AF                 +   +  
Sbjct: 702 DTLIRHLLWLRSSDPGTKAIVFSQFPEFLVILAQAFTHYHIGFSRFSDCDGIAKFKEDPS 761

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           I     H  +   GLNL    N ++      +     Q I R+      + G +    V+
Sbjct: 762 IECFLLHARAHSSGLNLVN-ANHVILCEPLVNTALELQAIARV-----HRIGQENETTVW 815

Query: 169 YLIAQNTIDELVLQRLRTKS 188
             I   T++E +      + 
Sbjct: 816 LYIVDGTVEESIYNLSVQRR 835


>gi|292557960|gb|ADE30961.1| putative helicase [Streptococcus suis GZ1]
          Length = 2554

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +   ++  D +G  I A                   Y   +   +    ++   ++   
Sbjct: 2113 QRMLNDMLPDFEGSKINA--------------CVDNIYRIWEETADKKSAQLVFCDLSTP 2158

Query: 65   KANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            K +    +        + R       +   +  T  K     Q+  +G++ +L       
Sbjct: 2159 KNDGTFSVYNDIRKKLIERGVPESEVRFIHEADTDVKKKELFQKTRKGEVRVLLGSTQKM 2218

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G N+Q     L      W   + +Q   RI      Q      V +Y  + + T D  
Sbjct: 2219 GAGTNVQDRLIALHDVDCPWRPSDLEQRSGRIIR----QGNSNPDVDIYRYVTEQTFDAY 2274

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 2275 LYQLVEGKQKFASQIMTS 2292


>gi|323448244|gb|EGB04145.1| hypothetical protein AURANDRAFT_39147 [Aureococcus anophagefferens]
          Length = 684

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 14/193 (7%)

Query: 4   YHKFQRELYC--DLQGENIEAFNSASKTVKCLQLANGAVYYD--EEKHWKEVHDEKIKAL 59
           Y   +RE     ++  + + A   A       +  +G       E +    +H    +  
Sbjct: 499 YATIEREDLQSPEMVRKEMAAKKKALLMELFRR--SGPAKLPAIERRISDLLHGVDEERF 556

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPA 117
              +        ++    N  L  ++     G T  KD         N+ K+ +      
Sbjct: 557 SGKMLVFAHHRKVLDTLANGILRDIKYIRIDGTTPAKDRQSRVTTFQNDAKVRVALLGIT 616

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G  L L    + ++F  L+W               R  + G    V V YL+A + +D
Sbjct: 617 AAGIALTLTA-ASRVIFTELYWTPAALL-----QAEDRAHRIGQTSEVVVEYLLADDCVD 670

Query: 178 ELVLQRLRTKSTI 190
           E++   ++ K  +
Sbjct: 671 EILWPLIQHKMLM 683


>gi|300024515|ref|YP_003757126.1| SNF2-related protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526336|gb|ADJ24805.1| SNF2-related protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 583

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-CTIQEWNEGKIPLLFAHPASCGHGLNL 125
                 V   +  +L+        G    +     +Q + +G   LL     S      L
Sbjct: 408 CGWHRDVYDIWMDELSEFNPVLYTGSESPRQKAKAVQMFMDGASNLLIMSLRSGAGLDGL 467

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           Q     +VF  L W  + H+Q + R+      + G +  V   YL+A    D  V+  + 
Sbjct: 468 QQRCRTIVFGELDWSGKVHEQCVARLD-----RPGQEHQVDAIYLVADGGSDPAVMGVIG 522

Query: 186 TKSTIQDLLLN 196
            K++    +++
Sbjct: 523 LKNSQAAGIVD 533


>gi|195377036|ref|XP_002047298.1| GJ13361 [Drosophila virilis]
 gi|194154456|gb|EDW69640.1| GJ13361 [Drosophila virilis]
          Length = 1282

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 23/184 (12%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVII-----EKANAAPIIVAYHFNSDLARLQKAF 88
            QL                   KI  +  ++     +  +   I++   + + L  +  A 
Sbjct: 1095 QLYYSVRKGVNSSKVIGDFSTKIAYIVELVLKIKSQSKDKEKILIFSQWATILNHIASAL 1154

Query: 89   PQGRTLDKDP---CTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEH 144
             Q     +       I E+ + +  +             L       +            
Sbjct: 1155 SQNGIEYRSKFTTRDIDEFKDPERNVTCLLMPLARGAKGLNLIEATHVFLVEPILTPG-- 1212

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT---K------STIQDLLL 195
                E   + R  + G  +   V+  I   TI+E +L+ +++   K        + ++ L
Sbjct: 1213 ---EELQAIGRVHRFGQTKPTTVHRFIVNGTIEENILKLIKSADDKSTLSTHWDLDNMTL 1269

Query: 196  NALK 199
            ++LK
Sbjct: 1270 DSLK 1273


>gi|154287644|ref|XP_001544617.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408258|gb|EDN03799.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1117

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  +NE   + +L        HGL++    + +   +  WD        E   + R
Sbjct: 876 RSEYLSLFNETESVRVLLMDLRQAAHGLHI-ACASRVFIVNPIWDP-----NFESQAIKR 929

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +    + V+V  L+ + T+++ +L+R   +  + +  L   +K+ + 
Sbjct: 930 AHRISQNKPVYVETLVLKGTLEDRMLRR---RKQMSNAELRHAEKDPLD 975


>gi|300022704|ref|YP_003755315.1| DEAD-like helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524525|gb|ADJ22994.1| DEAD-like helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 584

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-TIQEWNEGKIPLLFAHPASCGHGLNL 125
                 V   +  +LA     F  G    +    ++Q + EG   L      S      L
Sbjct: 410 CGWHRDVYEIWARELADFNPVFYTGTETPRQKKKSVQMFCEGHSNLFILSLRSGAGLNGL 469

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
           Q+    +VF  L W  + H+Q   R+      + G ++ V   YL A    D  ++  L 
Sbjct: 470 QHRCRTIVFGELDWSPKVHEQCTGRLD-----RPGQEQQVDEIYLHADGGSDPSMIGVLA 524

Query: 186 TKSTIQDLLLN 196
            KS+    +++
Sbjct: 525 LKSSQSQGIVD 535


>gi|116194320|ref|XP_001222972.1| hypothetical protein CHGG_03758 [Chaetomium globosum CBS 148.51]
 gi|88179671|gb|EAQ87139.1| hypothetical protein CHGG_03758 [Chaetomium globosum CBS 148.51]
          Length = 910

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +   +              +        W+        E   + R  + G  R V     
Sbjct: 809 VADINAVPADVKCLTLTVASRAYLMEPHWNPTL-----EEQALARIHRIGQMREVTTVRF 863

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLN 196
             +++ +E V++    K  +  +LL+
Sbjct: 864 YIRDSFEERVIELQNAKKDLARVLLS 889


>gi|331245308|ref|XP_003335291.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309314281|gb|EFP90872.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 2163

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWN-- 105
            +   +I +      ++V   F+  L ++  A           +G  L++        N  
Sbjct: 1997 RMCHLIKQLKEDDRVLVFVQFSDLLDKVYDALEARGIGVARVKGTALNQMKVMSNFQNEV 2056

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL-EEHQQMIERIGVTRQRQAGFKRA 164
            +  I +L  H              N   F S  +    +  +  E   + R R+ G  + 
Sbjct: 2057 DPHIRVLLLHATDSSASGANLTNANYAFFVSPLFLPTADKFKACETQAIGRLRRYGQMKK 2116

Query: 165  VFVYYLIAQNTIDELVLQ-RLRT-KSTIQDLL 194
            V V  ++  +TID  +   R    K  + + +
Sbjct: 2117 VHVIRMLTVDTIDTQIYGFRHDKSKEVLAEEI 2148


>gi|312792927|ref|YP_004025850.1| helicase domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180067|gb|ADQ40237.1| helicase domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 1111

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +          G  +D+      E+   K  ++ A  A+   G+NLQ+   ++V + + W
Sbjct: 510 EWGYAVVTIHGGMNMDERIRAEHEFKN-KAQVMVATEAAG-EGINLQF-CWLMVNYDIPW 566

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +    +Q + RI      + G +  V +Y L++ +T +  +LQ+L  K       L + +
Sbjct: 567 NPNRLEQRMGRI-----HRYGQESEVHIYNLVSGDTKEGQILQKLFQKLEAMRAHLGSDR 621


>gi|78355826|ref|YP_387275.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218231|gb|ABB37580.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 665

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + +    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 475 RTALVEHFRD-NAQIMIAT-EAAAEGVNLQF-CSLIVNYDLPWNPQRIEQRIGRC----- 526

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   + + N  D+ V + L  K  + + +  A
Sbjct: 527 HRYGQKHDVVVVNFLNERNAADQRVYELLEHKFNLFNGVFGA 568


>gi|87308613|ref|ZP_01090753.1| prophage LambdaMc01, helicase, SNF2 family protein [Blastopirellula
           marina DSM 3645]
 gi|87288705|gb|EAQ80599.1| prophage LambdaMc01, helicase, SNF2 family protein [Blastopirellula
           marina DSM 3645]
          Length = 493

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVA--------YHFNSDLARLQKAF----PQGRTLDKD 97
           E  D K + ++  +        IV           F + L R           G++  + 
Sbjct: 46  ECPDLKWEFIKEKVVDLAGEEKIVFFAQPIETVTTFVNFLKREYGEDVSVIIGGQSDAER 105

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
              ++++ +           + G G+NLQ     LV   + W+  + +Q + R+      
Sbjct: 106 SAEVEKFLKPDGARFLVSSKAGGEGINLQ-VARRLVHIDVPWNPMDMEQRVGRV-----H 159

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + G +R + V  ++ +++ +E   +  R K  +    L
Sbjct: 160 RFGSRRNIVVDTIVVKDSREEHAYRAAREKLRLIASTL 197


>gi|148667867|gb|EDL00284.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1, isoform CRA_a [Mus
           musculus]
          Length = 922

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +  +      + D++    +        +      +   GL      +++VF  L+W+  
Sbjct: 721 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTF-STADLVVFAELFWNPG 779

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                       R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 780 VLI-----QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 822


>gi|20809351|gb|AAH29078.1| Smarcal1 protein [Mus musculus]
          Length = 910

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +  +      + D++    +        +      +   GL      +++VF  L+W+  
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTF-STADLVVFAELFWNPG 767

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                       R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 768 VLI-----QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 810


>gi|74150596|dbj|BAE32320.1| unnamed protein product [Mus musculus]
          Length = 910

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +  +      + D++    +        +      +   GL      +++VF  L+W+  
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTF-STADLVVFAELFWNPG 767

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                       R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 768 VLI-----QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 810


>gi|229577278|ref|NP_061287.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Mus musculus]
 gi|60390942|sp|Q8BJL0|SMAL1_MOUSE RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; Short=mharp;
           AltName: Full=Sucrose nonfermenting protein 2-like 1
 gi|26350593|dbj|BAC38933.1| unnamed protein product [Mus musculus]
 gi|148667869|gb|EDL00286.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1, isoform CRA_c [Mus
           musculus]
          Length = 910

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +  +      + D++    +        +      +   GL      +++VF  L+W+  
Sbjct: 709 QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTF-STADLVVFAELFWNPG 767

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                       R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 768 VLI-----QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 810


>gi|302690328|ref|XP_003034843.1| hypothetical protein SCHCODRAFT_81115 [Schizophyllum commune H4-8]
 gi|300108539|gb|EFI99940.1| hypothetical protein SCHCODRAFT_81115 [Schizophyllum commune H4-8]
          Length = 1215

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 23/162 (14%)

Query: 53   DEKIKALE-VIIEKANAAPIIVAYH------FNSD----LARLQKAFPQGRTLDKDPCTI 101
              K+  +   ++  +     ++         +  +    L      F       +    +
Sbjct: 962  SSKLNYVMNEVLRYSGDEKFLIFSESPLTLAYIEEALQLLEVRYMRFTTEAKPRQREQMV 1021

Query: 102  QEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              +    +  +          GLNL    + ++F          Q  +E   + R  + G
Sbjct: 1022 MTFETSDVYRVFLMELKYGARGLNLVS-ASRVIFCEP-----VWQADVESQAIKRVHRIG 1075

Query: 161  FKR-AVFVYYLIAQNTIDELVLQR---LRTK-STIQDLLLNA 197
             KR  V V  LI + T +E +L R   L  K       +L+ 
Sbjct: 1076 QKRSEVNVKTLIIRGTAEENMLSRRLELEGKHLAKMPKVLDE 1117


>gi|226947213|ref|YP_002802286.1| helicase, Snf2 family [Azotobacter vinelandii DJ]
 gi|226722140|gb|ACO81311.1| helicase, Snf2 family [Azotobacter vinelandii DJ]
          Length = 929

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 74  AYHFNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E     +     +   G+NLQ+  ++
Sbjct: 431 QAIYKDWLQRHEGSDRITGSKTADTRAALVEHFKERGT--IMIATEAGAEGINLQF-CSL 487

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTI 190
           ++ + L W+ +  +Q I R       + G K  V V   + + N  D  V Q L  K  +
Sbjct: 488 VINYDLPWNPQRIEQRIGRC-----HRYGQKHDVVVVNFVDRSNEADARVYQLLSQKFKL 542

Query: 191 QDLLLNA 197
            + +  A
Sbjct: 543 FEGVFGA 549


>gi|302035518|ref|YP_003795840.1| putative dEAD/DEAH box helicase, SNF2 family [Candidatus Nitrospira
           defluvii]
 gi|300603582|emb|CBK39912.1| putative DEAD/DEAH box helicase, SNF2 family [Candidatus Nitrospira
           defluvii]
          Length = 912

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R +          +     +   E +I ++ A   +   GLNLQ  G ++    L W+  
Sbjct: 734 RSRLYQRGDSVTCERETLKKMVAEHEIRIMVAT-DAACEGLNLQTLGTLINI-DLPWNPT 791

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNAL 198
             +Q I RI    Q++      V +  L+ + T+DE + +RL  +      +   + + +
Sbjct: 792 RLEQRIGRIKRFGQKR----ETVDMLNLVNEQTVDEKIYERLSERMRNRYDLFGSVPDTI 847

Query: 199 KKETIH 204
           K E I 
Sbjct: 848 KDEWIE 853


>gi|189198616|ref|XP_001935645.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187982744|gb|EDU48232.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1218

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 19/152 (12%)

Query: 53   DEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTI 101
              K+  L   + +      II+ Y  ++    + +         +              +
Sbjct: 947  SAKLTYLLDKVMQHQATDKIIIFYDGDNAAFYIAQCLELMYVNHRIYARTLENTLRSEYV 1006

Query: 102  QEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +NE   + +L    A    GLNL    ++++  +            E   + R  + G
Sbjct: 1007 RLFNEHPDVRVLLIDVACGALGLNL-NAASVVLIVNPINRPGL-----EAQAIKRSHRIG 1060

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              + V V  L+ +NTI+  +  R   K +  D
Sbjct: 1061 QTKEVIVETLVLENTIEHAIFNRA-KKMSRAD 1091


>gi|299115214|emb|CBN74047.1| Ci-SWI/SNF [Ectocarpus siliculosus]
          Length = 1074

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 42/223 (18%)

Query: 1   MKQYHKF---QRELYCDLQGENI---------EAFNSASKTVKCLQLANGAVYYDE---- 44
           +K Y      QR+ Y DL   ++         +     +  ++  ++ N    +D     
Sbjct: 480 VKLYIGMTPMQRKWYKDLLNRDVGNLNTLGGPDKMRLLNILMQLRKVCNHPYLFDGAEPG 539

Query: 45  ----EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP--------- 89
                      +  K+  L+ ++ K     + +++       L  L+             
Sbjct: 540 PPFVNGSHLWENAGKMVLLQKLLPKLRMQGSRVLLFCQMTRLLDILEDYMHLQGYDYCRI 599

Query: 90  -QGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +     + E+NE      L      + G G+NL    ++++ +   W+ +    
Sbjct: 600 DGSTDGESRDSQMDEFNEPGSSKFLFLLSTRAGGLGINL-ATADVVILYDSDWNPQRELM 658

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + + G     +    +       +   +IDE +L++   K+ 
Sbjct: 659 AMVKFGADEILRMDDSQG------LTDESIDE-LLRKGEEKTE 694


>gi|299748682|ref|XP_001839314.2| hypothetical protein CC1G_13355 [Coprinopsis cinerea okayama7#130]
 gi|298408087|gb|EAU82504.2| hypothetical protein CC1G_13355 [Coprinopsis cinerea okayama7#130]
          Length = 1191

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 22/175 (12%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
           AVY       +   D+K+     I ++      +V   F               +  +  
Sbjct: 377 AVYPPMPTSAQFTRDKKVI----IFQEFTYCMALVQNIFKLYGMNKPLIIQGRHSFKQRA 432

Query: 99  CTIQEWN-EGKIPLLFAHPASCGHGLNLQ-------------YGGNILVFFSLWWDLEEH 144
             + ++N +    +L         GLNL              +  +      L  +  + 
Sbjct: 433 SIVDKFNKDPNHRVLIFS-KVGSTGLNLTRASIVIFLVRTSLHFLSNAAIHPLNPNPPKD 491

Query: 145 QQM---IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q      E   + R  +    + V V  L+A NT D  +    R K  + D    
Sbjct: 492 QPWSAQDEWQIIGRAYRQRQSKPVTVIQLLAANTADITLSLLARGKKDMLDAFFG 546


>gi|303288742|ref|XP_003063659.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454727|gb|EEH52032.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 518

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN 105
           ++     +    A   +   H    L                             ++ + 
Sbjct: 375 VQEYLETLIDGGADKFLFFAHHAELLDAAAATLKKRKIQHIRIDGSTPSTARGKLVETFQ 434

Query: 106 E-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + +      + G GL L    + ++F  L W   E           R  + G   +
Sbjct: 435 TVDAVRVAVLSIKAAGVGLTLTA-ASAVIFGELSWTPGEIV-----QAEDRAHRIGQVNS 488

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           V V +L A+NT+D+++   ++ K      +
Sbjct: 489 VSVQFLCARNTVDDIMWGSVQNKLENLGQV 518


>gi|158285693|ref|XP_308421.4| AGAP007417-PA [Anopheles gambiae str. PEST]
 gi|157020116|gb|EAA04610.4| AGAP007417-PA [Anopheles gambiae str. PEST]
          Length = 1323

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 13/152 (8%)

Query: 41   YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-- 98
             +    ++     + ++    ++ +  +  I++  H+   L  +  A        ++   
Sbjct: 1144 MHKIRGNFSNKVSKIVQTALELVAEDPSVKIVIFSHWEPILTEVGVALAANDITLREKSA 1203

Query: 99   ---CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 + ++ + +  I  L         GLNL      +       +  E         +
Sbjct: 1204 KFYQCVADFKDPEKGITCLLLPLRFGSKGLNLTE-ATHVFLVEPILNPGEEM-----QAI 1257

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
             R  + G  R  FV+  I  NTI+  + + ++
Sbjct: 1258 GRVHRIGQTRPTFVHRFIMLNTIETTIHETIQ 1289


>gi|149409031|ref|XP_001506895.1| PREDICTED: similar to SNF2 histone linker PHD RING helicase
            [Ornithorhynchus anatinus]
          Length = 1042

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L+ I  K   A  +V   +   L  + KA      +      I ++ 
Sbjct: 865  GSHSTKVEAVVRTLKRIQFKCPGAKSLVFSTWQDVLDIISKALYDNNMVFAQINGIHKFQ 924

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + KI +L     +  +GLN+      ++      +     Q I R+      
Sbjct: 925  ENLSAFKYDPKINILLLPLHTGSNGLNI-IEATHVLLVEPILNPAHELQAIGRV-----H 978

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 979  RIGQTKPTIVHRFLIKTTIEERMQTMLK 1006


>gi|54027756|ref|YP_121997.1| hypothetical protein pnf11080 [Nocardia farcinica IFM 10152]
 gi|54019264|dbj|BAD60633.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 2153

 Score = 54.8 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G I  LF   +  G G+N+Q     ++     W   + +Q   R       Q      +
Sbjct: 1760 NGSIQFLFGSTSKMGVGVNIQDRMVAMLHVDCPWRPADIEQRDGRGIR----QGNQNEEI 1815

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             V  ++ + T D  +      K+ + +  +
Sbjct: 1816 AVGRVVTEGTFDARMWAAQARKAAMVNQFM 1845


>gi|39975031|ref|XP_368906.1| hypothetical protein MGG_00338 [Magnaporthe oryzae 70-15]
 gi|145018771|gb|EDK03050.1| hypothetical protein MGG_00338 [Magnaporthe oryzae 70-15]
          Length = 1151

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              L      + +    ++    +  +NE  K  ++         GLN+    + + F + 
Sbjct: 924  EILHIPHLIYAKNLKAERRAQYVATFNETSKFRVMLMDLKQAAFGLNM-NSASRIYFVNP 982

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              + +     +E   + R R+ G  + V V  L+ + T++EL+++R   K   Q+ 
Sbjct: 983  VLNPQ-----VEAQAIGRARRIGQSKDVTVETLVLRGTLEELIVER--KKKMTQEE 1031


>gi|220907512|ref|YP_002482823.1| helicase domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219864123|gb|ACL44462.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 1194

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   D+     + +  + K+ +L A  A+   G+NLQ   +++V + L W+    +Q 
Sbjct: 540 HGGMGRDERKKAEEGFKQDIKVEVLVATDAAG-EGINLQR-AHLMVNYDLPWNPNRLEQR 597

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A+ T +  V   L  K  I+   L  
Sbjct: 598 FGRI-----HRIGQTEVCHLWNLVAEETREGDVYLSLLKKLEIEQKALGG 642


>gi|156564053|ref|YP_001429796.1| RecQ helicase [Bacillus phage 0305phi8-36]
 gi|154622750|gb|ABS83630.1| RecQ helicase [Bacillus phage 0305phi8-36]
          Length = 624

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 36/226 (15%)

Query: 1   MKQYHK--FQRELYCDLQGENIEAFNSASKTVKCL----QLANGAVYYDEEKHWKEVHDE 54
           +KQY K     +      G  +EA     +    L    Q +     +   K+ K     
Sbjct: 375 LKQYQKDLISEKSDLLRAGRKVEAKAVGDRMKAVLNARIQGSCHPNLFQMSKNKKIRERN 434

Query: 55  KIKALEVIIEKA--------------NAAPIIVAYHFNSD----------LARLQKAFPQ 90
           K  A++ I +                N   +++                   R  +    
Sbjct: 435 KKYAVKNIYDIPKFQECIQRVQEIVDNGHKVVIFVESKRMTVMLHREISKFTRAVRYVGG 494

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +   ++   ++   +    +L A   +   GLNLQ  G  L+ + L  +    +Q   R
Sbjct: 495 LKDSVRERRKMKFNTDPSCRVLIAT-GAGSTGLNLQA-GRYLINYDLPHNPAIWEQRKYR 552

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I             V +  LI Q  +DE + +RL  K    D  L 
Sbjct: 553 IRRLDSTHDR----VHIINLINQGIVDEQMRERLDDKQASFDATLE 594


>gi|67479899|ref|XP_655331.1| helicase  [Entamoeba histolytica HM-1:IMSS]
 gi|56472459|gb|EAL49943.1| helicase domain-containing protein [Entamoeba histolytica
           HM-1:IMSS]
          Length = 858

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           Y+      +  +   + ++ +K        ++    +      +   GL  Q    + +F
Sbjct: 647 YNLQRKKVQFIRIDGETKSENKKELVDIFRDDDNCRVAVLSILAANCGLEFQKAA-LCIF 705

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + +   E  Q  +RI    Q       +V + YLIA  + DE +   +  K  +   +
Sbjct: 706 AEMTFVPGEMLQAEDRIHRIGQ----QADSVKIEYLIANKSYDEQIWNTIEKKLDVVGKV 761

Query: 195 LNALKKETIH 204
           L+   +E  H
Sbjct: 762 LDGKSRELDH 771


>gi|240147676|ref|ZP_04746277.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200114|gb|EEU98398.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 285

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 56  FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 115

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 116 REGRGIR----QGNENEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 162


>gi|323452688|gb|EGB08561.1| hypothetical protein AURANDRAFT_71563 [Aureococcus anophagefferens]
          Length = 1637

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L     + G GLNL  G  +L+     W+     Q   R+      + G  R   V  L
Sbjct: 1374 VLLLSSRAGGAGLNL-PGACVLILLEPDWNPAVDDQTCARVW-----RPGQGRRTRVLRL 1427

Query: 171  IAQNTIDELVLQRLRTKSTI 190
             A  T++E VL R   K  +
Sbjct: 1428 AAAGTLEETVLARQAEKQAL 1447


>gi|195114874|ref|XP_002001992.1| GI17136 [Drosophila mojavensis]
 gi|193912567|gb|EDW11434.1| GI17136 [Drosophila mojavensis]
          Length = 733

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                             +C  G+ L     I+VF  L W+             +R  + 
Sbjct: 564 VDTFQKSSSCRAAVLSLKACNSGITLTA-AEIIVFAELDWNPSTL-----AQAESRAHRI 617

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           G  + V   YL+A  T D+ +   L+ K  +   +
Sbjct: 618 GQTKPVVCRYLMANQTADDTIWNMLKNKQEVLSKV 652


>gi|330982918|gb|EGH81021.1| SNF2-related:helicase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 281

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 147 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 206

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 207 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 266

Query: 112 LFAHPASCGHGLNLQ 126
                 + G GLNL 
Sbjct: 267 FLISLKAGGTGLNLT 281


>gi|218191902|gb|EEC74329.1| hypothetical protein OsI_09617 [Oryza sativa Indica Group]
          Length = 661

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 54/230 (23%)

Query: 2   KQY-HKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDE-------EKHWKEV 51
           K Y    ++EL       G      +  +  ++  + ++    +         E      
Sbjct: 310 KLYLSVLRKELQTLLTFTGGLSRHQSLQNIVIQLRKASSHPYLFSGIEPEPYVEGEHLVQ 369

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD------------ 97
              K+  L++I++K +     +++       L  LQ      +   +             
Sbjct: 370 ASGKLVMLDLILKKLHEVGHRVLLFAQMTQTLDILQDFLELRQYTYERLDGSVRAEERFA 429

Query: 98  ----------PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                        +++ N+    +      + G GLNL  G + ++F+   W+ +     
Sbjct: 430 AIKSFSSQPTKGVVRDDNQSGAFVFMISTRAGGVGLNL-IGADTVIFYEQDWNPQA---- 484

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            ++  + R  + G    V              +++R   K  +   ++  
Sbjct: 485 -DKQALQRAHRIGQLNNV--------------IMRRAERKLKLSHSVIGE 519


>gi|119185176|ref|XP_001243398.1| hypothetical protein CIMG_07294 [Coccidioides immitis RS]
          Length = 1386

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 36/189 (19%)

Query: 1    MK--QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            MK   Y   + +   +++   I                           +    D   + 
Sbjct: 1111 MKNAIYSDIKSDDLEEIKDIEIS------------------------GSFGTKIDTLARH 1146

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            L  +      A  IV   + S L        +   +  + D      +   +  I     
Sbjct: 1147 LIWLRHHDPGAKSIVFSQYKSFLGILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLL 1206

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            H  +   GLNL      +       +       IE   + R  + G  R   V+  +  +
Sbjct: 1207 HAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLVSD 1260

Query: 175  TIDELVLQR 183
            +++E + Q 
Sbjct: 1261 SVEESIYQL 1269


>gi|75759222|ref|ZP_00739323.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74493285|gb|EAO56400.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 68

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E     R  + G KR V V+ LI   T++E + + L  K ++ + ++ +
Sbjct: 1   MENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLNNAVITS 50


>gi|195401136|ref|XP_002059170.1| GJ16178 [Drosophila virilis]
 gi|194156044|gb|EDW71228.1| GJ16178 [Drosophila virilis]
          Length = 714

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +  + +            SC  G+ L     ++VF  L W+             +R
Sbjct: 550 RAAYVDTFQKKSSCKAAVLSLKSCNAGITLTA-AEMIVFAELDWNPSTL-----AQAESR 603

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + G  + V   YL+A  T D+ +   LR K  +   +
Sbjct: 604 AHRIGQTKPVVCRYLMANQTADDTIWNMLRNKQEVLSKV 642


>gi|326675456|ref|XP_003200358.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Danio rerio]
          Length = 1644

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 28/176 (15%)

Query: 32   CLQLANGA-----VYYDEEKHWKEV-----HDEKIKALEVII----EKANAAPIIVAYHF 77
            C Q  + A              +++     H  K++A+  ++         A  +V   +
Sbjct: 1439 CRQTTSHAEISYVFTTQNNHQGQDIPVKGSHSTKVEAVVRVLKKVQMTDPGAKSLVFSTW 1498

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEG--------KIPLLFAHPASCGHGLNLQYGG 129
               L  + KA             I ++ E         KI +L     +  +GLN+    
Sbjct: 1499 QGVLDIIAKALFDNNMEFAQINGIHKFQENLSAFKYEEKINILLLPLHTGSNGLNI-IEA 1557

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              ++      +     Q I R+      + G  +  FV+  + ++TI+E +   L+
Sbjct: 1558 THVLLVEPILNPAHELQAIGRV-----HRIGQTKPTFVHRFLIKSTIEERMQAMLK 1608


>gi|6562295|emb|CAB62593.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 786

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDK 96
             +    +   +E+  ++       +  A+   ++     F  D                
Sbjct: 523 HPLLSGLDYTPEEIDGDRSSTKM--VVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRD 580

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +Q +    ++ +      + G GL+       +VF  L                 R
Sbjct: 581 RQLAVQSFQFSSEVKIAIIGVEAGGVGLDF-SAAQNVVFLELPKTPSLLL-----QAEDR 634

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G   AV VY   A++T+DE   Q L  K        + 
Sbjct: 635 AHRRGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISSTTDG 676


>gi|255014572|ref|ZP_05286698.1| SNF2-related protein [Bacteroides sp. 2_1_7]
          Length = 916

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 38/205 (18%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEKIKALEVIIE--KANAAPIIVAY 75
            N     +   +++     YD      +++       +++A    ++  K     +I+  
Sbjct: 698 PNMLVTIMNLREVSEHPYLYDSALTTHDINELVSTSARLQATIKFLDSIKEKEEKVIIFV 757

Query: 76  HFNSDLARLQ--------------------KAFPQGRTLDKDPCTIQEWNE-GKIPLLFA 114
                   LQ                                  +I E+       ++  
Sbjct: 758 ERKETQKMLQKLSNERYGIICKIINGDTPSIIKRHSFDRQTRQASINEFQAVDGFNVIIM 817

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ- 173
            P + G GLN+    N ++ +S  W+  +     E     R  + G  + V+VYY +A  
Sbjct: 818 SPVAAGMGLNVTA-ANHVIHYSRQWNPAK-----ESQATDRAYRIGQTKDVYVYYPMAVT 871

Query: 174 ---NTIDELVLQRLRTKSTIQDLLL 195
               T DE++   L  K+++    +
Sbjct: 872 SDIKTFDEILDDLLSRKTSLATSTI 896


>gi|326922946|ref|XP_003207703.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Meleagris gallopavo]
          Length = 760

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----------ARLQKAFP 89
           + +       ++H   I+ +  ++ ++     +V  H    L                  
Sbjct: 518 LLFYNRTAEAKIHS-VIEYILELL-ESGKDKFLVFAHHKVVLDAIVEELEKKHFDYIRID 575

Query: 90  QGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +     Q++   +   +      +   GL L    +++VF  L+W+        
Sbjct: 576 GSTPSAERQSLCQKFQLSEKQAVAVLSLTAANMGLTL-SAADLVVFAELFWNPGVLI--- 631

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V V+YL+A+ T D+ +   ++ K  +
Sbjct: 632 --QAEDRAHRIGQTSSVNVHYLVARGTADDFLWPMIQEKIKV 671


>gi|303313780|ref|XP_003066899.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106566|gb|EER24754.1| SNF2 family N-terminal domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1419

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 36/189 (19%)

Query: 1    MK--QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            MK   Y   + +   +++   I                           +    D   + 
Sbjct: 1144 MKNAIYSDIKSDDLEEIKDIEIS------------------------GSFGTKIDTLARH 1179

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            L  +      A  IV   + S LA       +   +  + D      +   +  I     
Sbjct: 1180 LIWLRHHDPGAKSIVFSQYKSFLAILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLL 1239

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            H  +   GLNL      +       +       IE   + R  + G  R   V+  +  +
Sbjct: 1240 HAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLVSD 1293

Query: 175  TIDELVLQR 183
            +++E + Q 
Sbjct: 1294 SVEESIYQL 1302


>gi|320032599|gb|EFW14551.1| SNF2 family helicase/ATPase [Coccidioides posadasii str. Silveira]
          Length = 1406

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 36/189 (19%)

Query: 1    MK--QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
            MK   Y   + +   +++   I                           +    D   + 
Sbjct: 1131 MKNAIYSDIKSDDLEEIKDIEIS------------------------GSFGTKIDTLARH 1166

Query: 59   LEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            L  +      A  IV   + S L        +   +  + D      +   +  I     
Sbjct: 1167 LIWLRHHDPGAKSIVFSQYKSFLGILASAFSRFRIEFSSFDSYNGIERFKQDPSIECFLL 1226

Query: 115  HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
            H  +   GLNL      +       +       IE   + R  + G  R   V+  +  +
Sbjct: 1227 HAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLVSD 1280

Query: 175  TIDELVLQR 183
            +++E + Q 
Sbjct: 1281 SVEESIYQL 1289


>gi|291570552|dbj|BAI92824.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1182

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--KAF 88
           +  Q+  G  +  +  +       K     VI  +       +     + L R +     
Sbjct: 488 QLSQVIEGEFFTPKPHNSDGEIAPKTLPKLVIFTEHRDTLNYLRDRIRTLLGRPEAVVTI 547

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   ++     + +  +  I +L A   + G G+NLQ    ++V + L W+    +Q 
Sbjct: 548 HGGMGREERKKAEEAFKQDVNIQVLVAT-DAAGEGINLQR-AYLMVNYDLPWNPNRLEQR 605

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A  T +  V   L  K  I+   L  
Sbjct: 606 FGRI-----HRIGQTEVCHLWNLVAGETREGDVYLSLLRKLEIEQKALGG 650


>gi|307191279|gb|EFN74926.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Camponotus
           floridanus]
          Length = 670

 Score = 54.8 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 17/163 (10%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           +   + N      E K    ++      L+ I   A +  I           +  +   +
Sbjct: 444 RLKAVCNYVTNLFENKRKCLLYAHHQNILDAICNVAESMKI-----------KYIRIDGK 492

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  +     Q               +   G+ L    N++VF  L+W+          
Sbjct: 493 TNSEQRKHQIDQFQERDDYLAAVLSITAANAGVTLTA-ANLVVFTELFWNPGILC----- 546

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R  + G    V + YL+A+NT D+ +   ++ K  + + 
Sbjct: 547 QAEDRVHRIGQNDNVIIQYLVARNTADDYIWPLIKNKLHVLNA 589


>gi|317145065|ref|XP_001819268.2| SNF2 family helicase/ATPase [Aspergillus oryzae RIB40]
          Length = 1472

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  +         ++   +   L         F  G +       I ++  +  I   
Sbjct: 1236 RHILWLRHHDPGGKSVIFSQYKDFLEVLAIAFHRFKIGFSSVDSKDGISKFKSDSSIECF 1295

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1296 FLHARAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1349

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +T++E + +   ++  +   ++   K E +
Sbjct: 1350 SDTVEESIYELSVSRR-LAH-IVQKEKAEPL 1378


>gi|302926211|ref|XP_003054249.1| hypothetical protein NECHADRAFT_30723 [Nectria haematococca mpVI
            77-13-4]
 gi|256735190|gb|EEU48536.1| hypothetical protein NECHADRAFT_30723 [Nectria haematococca mpVI
            77-13-4]
          Length = 1145

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEV-IIEKANAAPIIVAY------HFN----SDLARLQK 86
            GA+   E          K+  L   II+      I+V Y       +       L     
Sbjct: 860  GALGPLEAARITSTASSKLSYLIDGIIKYQEDEKIVVFYENENAAWYLASVLETLQIQHL 919

Query: 87   AFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             + +G T  +    ++ +       +L         GL++    + + F S   + +   
Sbjct: 920  IYARGLTNKRKGQYVKTFLVNPDFRVLLMDITQAAFGLDI-RVASRIYFISPVLNPQ--- 975

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
              +E   + R R+   ++ V V  L+  N+I+E++++R   K  +     +A K
Sbjct: 976  --VEAQAIGRARRISQQKPVSVETLVLSNSIEEIIIER---KQHMTQAEHDAAK 1024


>gi|71907843|ref|YP_285430.1| helicase, C-terminal [Dechloromonas aromatica RCB]
 gi|71847464|gb|AAZ46960.1| Helicase, C-terminal [Dechloromonas aromatica RCB]
          Length = 1669

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +     +   EG++ +L    A  G G N+Q     L      W   + +Q
Sbjct: 1308 FVHAAETDVQKATLFKAVREGRVRVLLGSTAKMGVGTNVQTRLTALHHLDAPWRPCDVEQ 1367

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      V ++  + + + D  + Q L TK+     ++
Sbjct: 1368 REGRILR----QGNECEEVEIFRYVTEGSFDSYMWQTLETKARFIAQVM 1412


>gi|310831496|ref|YP_003970139.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386680|gb|ADO67540.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 737

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 7/141 (4%)

Query: 45  EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGRTLDKDPCTI 101
                     KI  +  I+ +      I+   F     +L  +        T+ K    +
Sbjct: 598 NGADMFQTSSKISQIIKILNET-DEKFIIYTQFPEIVHNLVEILNKLNIKTTVLKKGSLV 656

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
                    ++ A   +   G++L Y  N+++F     +   + +  E+  + R  + G 
Sbjct: 657 DF--SVDTRVVVASSTTESSGIDLTYFNNMIIFEPYVHNY-LYMKSYEKQIIGRINRIGQ 713

Query: 162 KRAVFVYYLIAQNTIDELVLQ 182
            +   V+ LI+ +TI+  +  
Sbjct: 714 TKHCNVHRLISTDTIESDIYA 734


>gi|209963446|ref|YP_002296361.1| helicase, SNF2 family, putative [Rhodospirillum centenum SW]
 gi|209956912|gb|ACI97548.1| helicase, SNF2 family, putative [Rhodospirillum centenum SW]
          Length = 958

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + E    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 493 RSALVDYFREQG-RIMIAT-EAGAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC----- 544

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   +  +N  D+ V + L  K  + + +  A
Sbjct: 545 HRYGQKHDVVVVNFLNRKNEADQRVFRLLSEKFQLFEGVFGA 586


>gi|10176715|dbj|BAB09945.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1178

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDK 96
             +    +   +E+  ++       +  A+   ++     F  D                
Sbjct: 523 HPLLSGLDYTPEEIDGDRSSTKM--VVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRD 580

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +Q +    ++ +      + G GL+       +VF  L                 R
Sbjct: 581 RQLAVQSFQFSSEVKIAIIGVEAGGVGLDF-SAAQNVVFLELPKTPSLLL-----QAEDR 634

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G   AV VY   A++T+DE   Q L  K        + 
Sbjct: 635 AHRRGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISSTTDG 676


>gi|330464865|ref|YP_004377766.1| putative helicase [Verrucosispora maris AB-18-032]
 gi|328813847|gb|AEB48018.1| putative helicase [Verrucosispora maris AB-18-032]
          Length = 1923

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            DL   +++       D D      +     G + +L       G G N+Q     L    
Sbjct: 1263 DLGMPRESVRFIHEADSDKEKANLFAACRNGDVSVLIGSTGRMGTGTNIQNRAVALHHLD 1322

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              W   +  Q   RI      Q      V +Y  +   + D    Q +  K    D ++ 
Sbjct: 1323 CPWRPADITQRDGRILR----QGNQNDEVSIYRYVVTGSFDAFSWQTVARKGGFIDQMMR 1378

Query: 197  ALKKETIH 204
              +   I 
Sbjct: 1379 GTEAREIE 1386


>gi|322501081|emb|CBZ36158.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1230

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
           +V Y  +   A   +    G +  +   +++ +  +           + G G+NLQ   +
Sbjct: 771 LVDYLHSRGWADHAEVLTGGSSEAERLTSVRRFREDPACLFFLLSIKAGGCGINLQA-AH 829

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++V     +         E   + R  + G +  V   YL   +  ++ V QR   K+  
Sbjct: 830 MVVLVDRDYTATN-----EDQALARVYRIGQRHTVRAVYLATTDASEQRVAQRAAAKNKP 884

Query: 191 QDLLLNA 197
           +  ++N 
Sbjct: 885 RQAIIND 891


>gi|58269458|ref|XP_571885.1| DNA supercoiling [Cryptococcus neoformans var. neoformans JEC21]
 gi|57228121|gb|AAW44578.1| DNA supercoiling, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 585

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L            +      +  +    + +          GLNL    N ++F    W 
Sbjct: 459 LDIASTFVGHTLHVQNRRLALDYFETPGVRVCLMDLKLAARGLNLVS-ANRVIFLGPVWS 517

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           L+     ++   + R  + G  R   V  L+ + T +E + +R
Sbjct: 518 LD-----VQAQAIKRVHRIGQTRPTLVQILVTEGTFEEDIARR 555


>gi|15425711|dbj|BAB64333.1| hypothetical protein [Streptomyces griseus]
          Length = 724

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    +  ++      +       G         ++++               E   V
Sbjct: 589 PARRQELVDAFSAVDGHAVLLSQIQAGGTGLNMQAASVVILCEPQIKPTL-----EHQAV 643

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDEL 179
            R  + G  R V V+ L+A +++D+ 
Sbjct: 644 ARAHRMGQVRPVQVHRLLATDSVDQR 669


>gi|83767127|dbj|BAE57266.1| unnamed protein product [Aspergillus oryzae]
          Length = 1442

 Score = 54.8 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLA---RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  +         ++   +   L         F  G +       I ++  +  I   
Sbjct: 1206 RHILWLRHHDPGGKSVIFSQYKDFLEVLAIAFHRFKIGFSSVDSKDGISKFKSDSSIECF 1265

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1266 FLHARAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1319

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             +T++E + +   ++  +   ++   K E +
Sbjct: 1320 SDTVEESIYELSVSRR-LAH-IVQKEKAEPL 1348


>gi|256025065|ref|ZP_05438930.1| Helicase [Escherichia sp. 4_1_40B]
          Length = 949

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++++ +     L     +   G+NLQ+  ++L+ + L W+ +  +Q I R+     
Sbjct: 483 KAALVEKFRDEGT--LMICTEAGAEGINLQF-CSLLINYDLPWNPQRVEQRIGRV----- 534

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 535 HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 576


>gi|66807307|ref|XP_637376.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60465784|gb|EAL63860.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1872

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               Q   +  + +L       G+GLNL      +       +        E+  + R  +
Sbjct: 1740 AINQFRKDPNVNVLLLPLIKGGNGLNL-IEATHVFLVEPILNPAL-----EKQAINRVHR 1793

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             G  +   ++  I +NTI+E V+Q  + K  
Sbjct: 1794 FGQNKETNIHRFIIKNTIEEKVVQMNQLKEQ 1824


>gi|83646357|ref|YP_434792.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83634400|gb|ABC30367.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis
           KCTC 2396]
          Length = 1003

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 45/230 (19%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGA---VYYDEEKHWKEV---- 51
           +K Y +        + G  IE          +K             Y      KE     
Sbjct: 770 LKYYDEV----IASVHGRKIEDKRRIVLPSLLKLKIACIHHDIGSGYTPSNSPKEFLRHA 825

Query: 52  -HDEKIKALEVIIEKANAA-----------------PIIVAYHFNSDLARLQKAFPQGRT 93
            +  KI+A+  +++                        ++   F      +        T
Sbjct: 826 ENSIKIQAMLDVLKDIEKRQEKVLVFATSKAVQAYTSALITTLFKIQAPIVNGDTKAVAT 885

Query: 94  LDK---DPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     I  +   K   +L   P + G GL    G N ++     W+  +     E
Sbjct: 886 PKDDLTRKAIIDRFQSEKGFRVLIMSPIAAGVGLT-VVGANNVIHLERHWNPAK-----E 939

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
                R  + G K+ V VY  +A +    + D  +   L  K T+ D ++
Sbjct: 940 AQATDRVYRIGQKKNVNVYLPMALHPNLSSFDIQLNTLLNNKVTLSDAVV 989


>gi|328853096|gb|EGG02237.1| hypothetical protein MELLADRAFT_91569 [Melampsora larici-populina
           98AG31]
          Length = 244

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 74  AYHFNSDLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
              F   +         G         T ++     +  N+  I        + G GLN+
Sbjct: 61  WRCFMEWIKIALDCHSIGSGTLHGDMTTHERTCQLNRFKNDNNIEAFIVSIEAGGVGLNM 120

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               + +      W+ +  Q       +    + G    V VY+++A  ++++ +   
Sbjct: 121 T-CADEVYLMDAHWNPQIVQ-----QAIDCLHRIGQTHPVKVYHVVAGQSVEQHLFNV 172


>gi|255938726|ref|XP_002560133.1| Pc14g01390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584754|emb|CAP74280.1| Pc14g01390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1487

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 22/178 (12%)

Query: 35   LANGAVYYDEEKHWKEVHDEKI----KALEVIIEKANAAPIIVAYHFNSDLA----RLQK 86
            +++G +   +    +E +  KI    + +  + E    A  I+   + S L+        
Sbjct: 1231 ISSGHLNEIKNIDLEESYGSKIDTLVRHILWLREHDPGAKSIIFSQYGSFLSSLQAVFGV 1290

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T+D      +  ++  I     H  +   GLNL      +       +     Q
Sbjct: 1291 LEISSTTIDSPDGIEKFKSDPAIECFLLHGKAQASGLNLT-VATHVFLCEPLINTAIELQ 1349

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR--------LRTKSTIQDLLLN 196
            +I R+      + G  R   V+  +   T++E + +         +  K       L+
Sbjct: 1350 VIARV-----HRIGQHRPTTVWMYLVSGTVEESIYEISVTRRLTHITEKEKQAKAALS 1402


>gi|296205540|ref|XP_002749811.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1
           [Callithrix jacchus]
          Length = 957

 Score = 54.4 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN-------SDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R +    +  
Sbjct: 702 ILFFNRTAEAKIPS-VIEYIMDLL-ESGKEKFLVFAHHKVVLDAVMKELERKKVPHIRID 759

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 760 GSTSSAEREDLCQQFQLSQRHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 815

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 816 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 855


>gi|219116552|ref|XP_002179071.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409838|gb|EEC49769.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 233

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +        ++  + +      + G  + L    + + F  L+W               
Sbjct: 54  FRQEQITSFQSDPTVRVALLGITAAGVAVTLTA-SSTVWFAELFWTPALMI-----QAED 107

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R  + G +  V   Y +A+ T+D+++ + +  K       +   +K
Sbjct: 108 RCHRIGQQAQVKCLYFVAKGTLDDVLWKLIEKKFQDLGEFVEGKEK 153


>gi|291551202|emb|CBL27464.1| DNA methylase [Ruminococcus torques L2-14]
          Length = 2439

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +   ++  D +G  I A                   Y   +   +    ++   ++   
Sbjct: 1998 QRMLNDMLPDFEGSKINA--------------CVDNIYRIWEKNTDKKSAQLVFCDLSTP 2043

Query: 65   KANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            K +    +        + R       K   +  T  K     Q+  +G++ +L       
Sbjct: 2044 KNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMKKKELFQKTRKGEVRVLLGSTQKM 2103

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G N+Q     L      W   + +Q   RI      Q      V +Y  + + T D  
Sbjct: 2104 GAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIVR----QGNENPQVDIYRYVTEQTFDAY 2159

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 2160 LYQLVEGKQKFASQIMTS 2177


>gi|42567734|ref|NP_196398.2| SNF2 domain-containing protein / helicase domain-containing protein
           / HNH endonuclease domain-containing protein
           [Arabidopsis thaliana]
 gi|332003824|gb|AED91207.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 1190

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDK 96
             +    +   +E+  ++       +  A+   ++     F  D                
Sbjct: 535 HPLLSGLDYTPEEIDGDRSSTKM--VVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRD 592

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +Q +    ++ +      + G GL+       +VF  L                 R
Sbjct: 593 RQLAVQSFQFSSEVKIAIIGVEAGGVGLDF-SAAQNVVFLELPKTPSLLL-----QAEDR 646

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + G   AV VY   A++T+DE   Q L  K        + 
Sbjct: 647 AHRRGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISSTTDG 688


>gi|319936976|ref|ZP_08011386.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319807912|gb|EFW04491.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 2439

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +   ++  D +G  I A                   Y   K   +    ++   ++   
Sbjct: 1998 QRMLNDMLPDFEGSKINA--------------CVDNIYRIWKENADKKSAQLVFCDLSTP 2043

Query: 65   KANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            K +    +        + R       K   +  T  K     Q+  +G++ +L       
Sbjct: 2044 KNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMKKKELFQKTRKGEVRVLLGSTQKM 2103

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G N+Q     L      W   + +Q   RI      Q      V +Y  + + T D  
Sbjct: 2104 GAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIVR----QGNENPQVDIYRYVTEQTFDAY 2159

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q +  K      ++ +
Sbjct: 2160 LYQLVEGKQKFASQIMTS 2177


>gi|225155242|ref|ZP_03723736.1| helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224803997|gb|EEG22226.1| helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 1642

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +     ++   GK+ +L       G G N+Q            W   + +Q
Sbjct: 1256 FIQDYDTDAEKVSLFKDVRAGKVRVLLGSTQKMGAGTNVQSLLVAEHHLDAPWRPADIEQ 1315

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + + + D  + Q L TK+     ++  
Sbjct: 1316 REGRILR----QGNTNPVVKIFRYVTEGSFDAYMWQTLETKAKFISQVMQG 1362


>gi|209523622|ref|ZP_03272176.1| helicase domain protein [Arthrospira maxima CS-328]
 gi|209496027|gb|EDZ96328.1| helicase domain protein [Arthrospira maxima CS-328]
          Length = 1175

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 34/219 (15%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQL-------------A----------NGAVY 41
            K + E   DL   +       ++  +  QL                        N    
Sbjct: 440 EKIETE-VVDLATASRTVQELQTEIERLRQLEELAQRVRRSGKDCKWEQLSKVMENEIFA 498

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
           +   ++      +K     VI  +       +     + L R +       ++ +D    
Sbjct: 499 FPNPQNGDHEPGQKALRKLVIFTEHRDTLNYLRDRIKTLLGRPEAVVTIHGSMGRDERKK 558

Query: 102 ---QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                  +  + +L A   + G G+NLQ   +++V + L W+    +Q   RI      +
Sbjct: 559 AEEDFKQDVTVQVLVAT-DAAGEGINLQR-AHLMVNYDLPWNPNRLEQRFGRI-----HR 611

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            G      ++ L+A  T +  V   L  K  I+   L  
Sbjct: 612 IGQTEVCHLWNLVAGETREGDVYLSLLRKLEIEQNALGG 650


>gi|331028047|ref|YP_004421762.1| DNA methylase [Synechococcus phage S-CBS3]
 gi|294805660|gb|ADF42498.1| DNA methylase [Synechococcus phage S-CBS3]
          Length = 754

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G I +L + P+ CG G+N Q   + + F  L    E   Q I R     Q+Q     
Sbjct: 341 FQQGTIRVLVSKPSICGFGMNFQQ-CHNVAFVGLSHSYEAFYQAIRRCWRYGQQQPVQAH 399

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + Y +A+  + + + ++    + + + +++ +K+ T+ 
Sbjct: 400 ---IIYDVAEGAVVQNIRRKESESTAMAEAMVSIMKESTMQ 437


>gi|322815488|gb|EFZ24135.1| DNA repair protein, putative [Trypanosoma cruzi]
          Length = 142

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    +Q + ++  +  +     + G GLNLQ   N ++    WW+              
Sbjct: 27  QRQAVLQAFLHDPGVRAILISLKAGGEGLNLQ-VANHVILVDPWWNPAVEM-----QAAQ 80

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           R  + G  + V V   + + +++E ++     K  + +  ++ 
Sbjct: 81  RAHRIGQTKPVRVVRFVVERSVEERMMDLQDKKMLVIEGTIDG 123


>gi|70932532|ref|XP_737773.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56513438|emb|CAH86839.1| hypothetical protein PC302186.00.0 [Plasmodium chabaudi chabaudi]
          Length = 99

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           ++     +R    R  + G K+ V++Y L  +NTI+E V +  + K  +   
Sbjct: 1   QDWNPPNDRQAEDRVHRLGQKKEVYIYRLCCKNTIEETVFKCCKAKLHLDQA 52


>gi|300123786|emb|CBK25057.2| unnamed protein product [Blastocystis hominis]
          Length = 169

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +         + +I +L A    CGHG +L    ++++     ++       ++  
Sbjct: 50  CAEKRMEYVEHFQTDNEISILLATTGICGHGFSLTA-ASVVILVDHNFNP-----YVDVQ 103

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            + R  + G K AV VY L++    +E +++
Sbjct: 104 AIDRCHRIGQKNAVMVYRLVSNEPNEERLMK 134


>gi|146093740|ref|XP_001466981.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071345|emb|CAM70031.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 1230

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
           +V Y  +   A   +    G +  +   +++ +  +           + G G+NLQ   +
Sbjct: 771 LVDYLHSRGWADYAEVLTGGSSEAERLTSVRRFREDPACLFFLLSIKAGGCGINLQA-AH 829

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++V     +         E   + R  + G +  V   YL   +  ++ V QR   K+  
Sbjct: 830 MVVLVDRDYTATN-----EDQALARVYRIGQRHTVRAVYLATTDASEQRVAQRAAAKNKP 884

Query: 191 QDLLLNA 197
           +  ++N 
Sbjct: 885 RQAIIND 891


>gi|6693793|gb|AAF24985.1|AF088884_1 HepA-related protein Harp [Mus musculus]
          Length = 910

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   I+ A     +   +Q     G    +      Q +       +      
Sbjct: 684 EKFLVFAHHKVILDAVAKELERKNVQHIRIDGSRPTRARELKCQRFQLSKGHTVALLSIP 743

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D
Sbjct: 744 AANMGLTF-STADLVVFAELFWNPGVLI-----QAEDRVHRIGQTNSVSIHYLVAKGTAD 797

Query: 178 ELVLQRLRTKSTI 190
           + +   ++ K  +
Sbjct: 798 DYLWPLIQEKIKV 810


>gi|157157048|ref|YP_001464327.1| SNF2 family helicase [Escherichia coli E24377A]
 gi|157079078|gb|ABV18786.1| helicase, SNF2 family [Escherichia coli E24377A]
          Length = 951

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++++ +     L     +   G+NLQ+  ++L+ + L W+ +  +Q I R+     
Sbjct: 485 KAALVEKFRDEGT--LMICTEAGAEGINLQF-CSLLINYDLPWNPQRVEQRIGRV----- 536

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 537 HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 578


>gi|77163610|ref|YP_342135.1| Type III restriction enzyme, res subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254434998|ref|ZP_05048505.1| Type III restriction enzyme, res subunit family [Nitrosococcus
           oceani AFC27]
 gi|76881924|gb|ABA56605.1| Type III restriction enzyme, res subunit [Nitrosococcus oceani ATCC
           19707]
 gi|207088109|gb|EDZ65381.1| Type III restriction enzyme, res subunit family [Nitrosococcus
           oceani AFC27]
          Length = 962

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 72/207 (34%), Gaps = 33/207 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAF-----NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    +EL  +L   ++ A      +  +           A    E+       +  I
Sbjct: 434 ELYDMDGQELLDELLKSHVLALQSEGSHVETLL--------DAAVRCEQAGPDAKAEALI 485

Query: 57  KALEVIIEKAN--AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
           + +  +  + N     +++   F      L++                 ++        +
Sbjct: 486 EWIYELQAEENEPDLKVLIFTEFVPTQEMLKEFLEARGISVVTLNGSMDMEVRGAAQDTF 545

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            +    +L     + G GLNLQ+  ++++ + + W+    +Q I R+      + G  + 
Sbjct: 546 RKSH-RVLL-STDAGGEGLNLQF-AHVIINYDIPWNPMRLEQRIGRVD-----RIGQPKM 597

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           V     + +++++  V + L  K ++ 
Sbjct: 598 VRAINFVFEDSVEFRVREVLEQKLSVI 624


>gi|312377236|gb|EFR24119.1| hypothetical protein AND_11532 [Anopheles darlingi]
          Length = 185

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNEGK--IPL 111
           ++ +        I++  H+ S   +L  A  +     ++        + E+ +    +  
Sbjct: 31  VKELKAAEPDVKIVIFSHWESIQVKLAAALKENGVTYREKSQKFFLAVDEFKDYSAGVTC 90

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L         GLNL      +       +  E QQ I R+      + G  R   V+  I
Sbjct: 91  LLMPLRFGSKGLNLTE-ATHVFLVEPILNPGEEQQAIGRV-----HRIGQTRPTVVHRFI 144

Query: 172 AQNTIDELVLQRLRT 186
              TI+E + + ++ 
Sbjct: 145 VLRTIEEKIHETIQQ 159


>gi|159480590|ref|XP_001698365.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282105|gb|EDP07858.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1182

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ-YGGNILVFFSLWWDLEEHQQMIE 149
            G    +        ++ K  +L    ++ G    L     +         +        E
Sbjct: 1081 GNPEARQAALQTFLHDRKCRVLLLMKSTSGGAAGLTLTVAHTAFMLEPALNPGL-----E 1135

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
                 R  + G      V  +IA++T++E 
Sbjct: 1136 AQAAARICRLGQDWPTRVVRIIAKDTVEER 1165


>gi|220674521|emb|CAR69082.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae ATCC 700669]
          Length = 2088

 Score = 54.4 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + Q+
Sbjct: 1700 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQR 1759

Query: 147  MIERIGVTRQR------------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               +  + R+             Q    + V +Y+ I + + D  +      K      +
Sbjct: 1760 ASVKAVMVRRWVLSLQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQI 1819

Query: 195  LNALKKETIH 204
            + +  KE I 
Sbjct: 1820 MTS--KEPIR 1827


>gi|325833145|ref|ZP_08165693.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
 gi|325485701|gb|EGC88168.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1860

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G++ +L       G G N+Q     L      W   +  Q   RI      Q      V
Sbjct: 1280 SGEVRVLMGSTQKLGEGTNVQTRLVALHHLDCPWRPSDLAQREGRILR----QGNENGEV 1335

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +Y  + + T D  + Q +  K      +  
Sbjct: 1336 GIYRYVTKGTFDSYMYQTVENKQRFISQVFG 1366


>gi|325832284|ref|ZP_08165283.1| methyltransferase domain protein [Eggerthella sp. HGA1]
 gi|325486120|gb|EGC88574.1| methyltransferase domain protein [Eggerthella sp. HGA1]
          Length = 2013

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G + +L       G G N+Q     +      W   + QQ + RI      Q      
Sbjct: 1666 NAGAVRILMGSTQKMGAGTNVQRRLAAIHDLDCPWRPADLQQRLGRIER----QGNMNAE 1721

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y  + + T D  + Q +  K      ++ +
Sbjct: 1722 VEAYRYVTEGTFDAYLYQLVEGKQRFIAQVMTS 1754


>gi|317489197|ref|ZP_07947715.1| methyltransferase domain-containing protein [Eggerthella sp.
            1_3_56FAA]
 gi|316911705|gb|EFV33296.1| methyltransferase domain-containing protein [Eggerthella sp.
            1_3_56FAA]
          Length = 2013

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G + +L       G G N+Q     +      W   + QQ + RI      Q      
Sbjct: 1666 NAGAVRILMGSTQKMGAGTNVQRRLAAIHDLDCPWRPADLQQRLGRIER----QGNMNAE 1721

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V  Y  + + T D  + Q +  K      ++ +
Sbjct: 1722 VEAYRYVTEGTFDAYLYQLVEGKQRFIAQVMTS 1754


>gi|289764892|ref|ZP_06524270.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
 gi|289716447|gb|EFD80459.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
          Length = 1914

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 1584 FIHDANNEKQKDEIFSKVRSGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQ 1643

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + +NT D  + Q +  K      ++ +
Sbjct: 1644 RAGRIVR----QGNENKNVEVYRYVTENTFDAYLWQTIENKQKFISQIMTS 1690


>gi|289679709|ref|ZP_06500599.1| SNF2-related:helicase, C-terminal:SWIM Zn-finger [Pseudomonas
           syringae pv. syringae FF5]
          Length = 339

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 6   KFQRELYCDLQGENIEAFNS--ASKTVKCLQLANGAVYYDEEK--HWKEVHDEKIKALEV 61
              +++  ++  + +           +K  Q+       +++   + K+    K+ +L  
Sbjct: 206 AMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNQDMPVNSKQGTSGKLNSLME 265

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ--------GRTLDKDPCTIQEWNEGKIPL 111
           + E+  A    I++   F S L+ +++   Q          +       I ++  GK+P+
Sbjct: 266 MFEELLAEGRKILLFSQFTSMLSLIEEELKQRGIAYALLTGSTRDRRTPIHDFQSGKLPI 325

Query: 112 LFAHPASCGHGLNL 125
                 + G GLNL
Sbjct: 326 FLISLKAGGTGLNL 339


>gi|256026903|ref|ZP_05440737.1| helicase [Fusobacterium sp. D11]
          Length = 1923

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 1593 FIHDANNEKQKDEIFSKVRSGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQ 1652

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + +NT D  + Q +  K      ++ +
Sbjct: 1653 RAGRIVR----QGNENKNVEVYRYVTENTFDAYLWQTIENKQKFISQIMTS 1699


>gi|154498723|ref|ZP_02037101.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799]
 gi|150272263|gb|EDM99461.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC 29799]
          Length = 2062

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 1679 FIHEANTEVRKKELFAKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 1738

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 1739 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1785


>gi|323448194|gb|EGB04096.1| hypothetical protein AURANDRAFT_33074 [Aureococcus anophagefferens]
          Length = 79

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++  +  W+  +     +     R  + G  RA  V  L+ + TI+E ++ R   K 
Sbjct: 16  ANFMMLLNPSWNPAQ-----DEQAAMRIHRIGQSRACTVIRLVGRGTIEETIVGRQAEKD 70

Query: 189 TIQDLL 194
            +  +L
Sbjct: 71  GLCAIL 76


>gi|218696569|ref|YP_002404236.1| Helicase [Escherichia coli 55989]
 gi|218353301|emb|CAU99275.1| Helicase [Escherichia coli 55989]
          Length = 955

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++++ +     L     +   G+NLQ+  ++L+ + L W+ +  +Q I R+     
Sbjct: 489 KAALVEKFRDEGT--LMICTEAGAEGINLQF-CSLLINYDLPWNPQRVEQRIGRV----- 540

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   I +    D+ V + L  K  + + +  A
Sbjct: 541 HRYGQKHDVVVVNFINKGNRADQRVFELLSQKFQLFEGVFGA 582


>gi|315645020|ref|ZP_07898146.1| SNF2-related protein [Paenibacillus vortex V453]
 gi|315279441|gb|EFU42746.1| SNF2-related protein [Paenibacillus vortex V453]
          Length = 933

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 32/121 (26%), Gaps = 17/121 (14%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASK--TVKCLQLANGAVYYD--EEKHWKEVHDEKIKA 58
            Y     ++   ++     A          K  Q+ +        E +  +     K++ 
Sbjct: 802 MYQAVVDDMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDEGRAVRAESSGKMER 861

Query: 59  LEVIIEKAN--AAPIIVAYHF-------NSDLARLQ----KAFPQGRTLDKDPCTIQEWN 105
           +  I++  +      ++   +        S L R           G    +    ++ + 
Sbjct: 862 MLEILDSISDVGESALIFTQYVGMGELLVSMLGRKYGKRPYFLHGGVPKRERDEMVRAFQ 921

Query: 106 E 106
            
Sbjct: 922 A 922


>gi|154496923|ref|ZP_02035619.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
 gi|150273881|gb|EDN00994.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
          Length = 2317

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2166 FIHEANTEVRKKELFAKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2225

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2226 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2272


>gi|160914103|ref|ZP_02076325.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
 gi|158433914|gb|EDP12203.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
          Length = 2685

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2302 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2361

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2362 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2408


>gi|194706134|gb|ACF87151.1| unknown [Zea mays]
          Length = 139

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 26/49 (53%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +++  + R  + G  R V VY L    +++E ++++   K  ++ +++ 
Sbjct: 1   MDQQAMDRCHRIGQTRPVHVYRLATSYSVEERIIKKAFGKLKLEHVVIG 49


>gi|26335537|dbj|BAC31469.1| unnamed protein product [Mus musculus]
          Length = 263

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +  +      + D++    +        +      +   GL      +++VF  L+W+  
Sbjct: 62  QHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTF-STADLVVFAELFWNPG 120

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                       R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 121 VLI-----QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKV 163


>gi|321156809|emb|CBW38793.1| putative conjugative transposon DNA recombination protein
            [Streptococcus pneumoniae]
          Length = 2091

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + Q+
Sbjct: 1703 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQR 1762

Query: 147  MIERIGVTRQR------------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               +  + R+             Q    + V +Y+ I + + D  +      K      +
Sbjct: 1763 ASVKAVMVRRWVLSLQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQI 1822

Query: 195  LNALKKETIH 204
            + +  KE I 
Sbjct: 1823 MTS--KEPIR 1830


>gi|218199966|gb|EEC82393.1| hypothetical protein OsI_26740 [Oryza sativa Indica Group]
          Length = 1165

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 11/168 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDKD 97
                E      +  +     +  I  A+   ++     F ++            +  + 
Sbjct: 542 HFIMKEPADNGSLDSQ--SNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRIDGSTSPRER 599

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +    ++ +      + G GL+       +VF  L     E           R 
Sbjct: 600 KDAVDSFRLNPEVMVAIIGITAGGVGLDF-SSAQNVVFVELPKSASELL-----QAEDRA 653

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G   AV +Y   A+NT+DE     L         L+N  KK+ I 
Sbjct: 654 HRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNG-KKDAIR 700


>gi|149710126|ref|XP_001490055.1| PREDICTED: SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily a-like 1 [Equus
           caballus]
          Length = 948

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   ++ A     +   +Q     G T         Q++    +  +      
Sbjct: 727 EKFLVFAHHKVVLDAITKELERKHVQHIRIDGATSSADREALCQQFQLSERHAVAVLSIT 786

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G  R+V ++YL+A+ T D
Sbjct: 787 AANMGLTF-SSADLVVFAELFWNPGVLI-----QAEDRVHRIGQSRSVGIHYLVARGTAD 840

Query: 178 ELVLQRLRTKSTIQDL 193
           + +   ++ K  I   
Sbjct: 841 DYLWPLIQEKIKILSE 856


>gi|58260784|ref|XP_567802.1| DNA repair protein rad8 [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57229883|gb|AAW46285.1| DNA repair protein rad8, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1856

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 97   DPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM-IERIG 152
               T+  +   N     +L           +     N  +F    +         +E   
Sbjct: 1745 RANTLDRFQSTNADTARVLLLKMNDASAAGSNLTTANHAIFLGPLFTNSLFNYRAVETQA 1804

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVL--QRLRTKSTIQ 191
            + R R+ G ++ V ++ L+A +TID  +   +R   K    
Sbjct: 1805 IGRVRRYGQQKKVHIHRLLALDTIDMTIFNTRRAELKEKTD 1845


>gi|297736548|emb|CBI25419.3| unnamed protein product [Vitis vinifera]
          Length = 1635

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    + ++ E  G   +L A   +C  G++L    + ++     W+  +      +  
Sbjct: 1451 FERGRVMDQFEEPGGASKVLLASITACAEGISLTA-ASRVILLDTEWNPSKQ-----KQA 1504

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V R  + G +R V+VY L+  +T++E    R   K  +  ++ + 
Sbjct: 1505 VARAFRPGQERVVYVYQLLETDTLEEEKNSRTNWKEWVSSMIFSE 1549


>gi|298712931|emb|CBJ26833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1672

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 7/103 (6%)

Query: 91   GRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            GRT  +    +  + N+  I ++     S   GL      + +      W   +     E
Sbjct: 1388 GRTRVERSSAVSSFTNDPSIKVILLTTGSAAAGLT-LTAASTVYMLDPVWSAAD-----E 1441

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
               + R  + G    V       +++++E +L    +K     
Sbjct: 1442 AQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQ 1484


>gi|99035906|ref|ZP_01314955.1| hypothetical protein Wendoof_01000201 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 73

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +E     R  + G +R V VY L++  T +E + + +++K  + +L +++ +
Sbjct: 1   MEAQATDRAYRIGQERNVMVYRLLSTGTFEERIDEMIQSKKELANLTISSGE 52


>gi|74005708|ref|XP_536062.2| PREDICTED: similar to SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin a-like 1 [Canis
           familiaris]
          Length = 961

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 18/176 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL---- 81
            +   K  Q    A+     +  +      I+ +  ++ ++     +V  H    L    
Sbjct: 691 MTTMDKTKQQQKEALLLFFNRTAEAKIPSVIEYILDLL-ESGREKFLVFAHHKVVLSAVT 749

Query: 82  ------ARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVF 134
                            +        Q++   +   +      +   GL      +++VF
Sbjct: 750 RELEKKHVPHIHIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLTFTS-ADLVVF 808

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
             L+W+              R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 809 AELFWNPGVLL-----QAEDRVHRIGQSSSVSIHYLVAKGTADDYLWPLIQEKIKV 859


>gi|167518191|ref|XP_001743436.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778535|gb|EDQ92150.1| predicted protein [Monosiga brevicollis MX1]
          Length = 980

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 96  KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    I+ +    ++ LL A        ++L    + ++ F   WD       I RI   
Sbjct: 461 ERHQRIEAFSTSPRMGLLIACTKIGRLNIDLTT-ASRVIIFDAAWDALSDTSAIARI--- 516

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
              + G  R VF+Y L+A  T+D L+ +    K+ + + +    KK+++ 
Sbjct: 517 --YRYGQTRPVFIYRLVAAGTLDVLLHRPQSNKARLTNYV----KKDSLE 560


>gi|126727279|ref|ZP_01743115.1| helicase [Rhodobacterales bacterium HTCC2150]
 gi|126703488|gb|EBA02585.1| helicase [Rhodobacterales bacterium HTCC2150]
          Length = 963

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +      ++     S   G+NLQ+  ++L+ F L W+ +  +Q I R      
Sbjct: 501 KAALVEAFKSSNKSIMI-STESGAEGINLQF-CSVLINFDLPWNPQRIEQRIGRC----- 553

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V  ++  +N  +  + + L  K  + D +  +
Sbjct: 554 HRYGQKIDVTVVNMLNRKNHTEARIFELLNEKFKLFDGVFGS 595


>gi|134081676|emb|CAK46610.1| unnamed protein product [Aspergillus niger]
          Length = 1189

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 50   EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT 100
             +   K+  +  I+ +     +   I++   F   +  L        +P      K    
Sbjct: 974  HMPSAKLTKIREILTEWLAQDSPGKIVIFTQFLDFVQILATMCQAENWPYVLLTGKLSLA 1033

Query: 101  IQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ--MIERI 151
            ++E N       + +  ++ A   + G GL+L    N  +   LWW+    +Q   +   
Sbjct: 1034 VRENNMTLFSDKDSEKRIMIASLKAGGTGLDL-SAANKCILVDLWWNEAIQEQLLTLPFQ 1092

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R  + G +  V    LI +N+ID+ +L     K+ I    +  
Sbjct: 1093 AFCRLFRIGQESEVEFVKLIIENSIDDYLLNLQTHKTAIITGAMGE 1138


>gi|134117273|ref|XP_772863.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50255481|gb|EAL18216.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 2291

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 97   DPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM-IERIG 152
               T+  +   N     +L           +     N  +F    +         +E   
Sbjct: 2180 RANTLDRFQSTNADTARVLLLKMNDASAAGSNLTTANHAIFLGPLFTNSLFNYRAVETQA 2239

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVL--QRLRTKSTIQ 191
            + R R+ G ++ V ++ L+A +TID  +   +R   K    
Sbjct: 2240 IGRVRRYGQQKKVHIHRLLALDTIDMTIFNTRRAELKEKTD 2280


>gi|297607570|ref|NP_001060181.2| Os07g0598300 [Oryza sativa Japonica Group]
 gi|255677946|dbj|BAF22095.2| Os07g0598300 [Oryza sativa Japonica Group]
          Length = 1158

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 11/168 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDKD 97
                E      +  +     +  I  A+   ++     F ++            +  + 
Sbjct: 506 HFIMKEPADNGSLDSQ--SNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRIDGSTSPRER 563

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +    ++ +      + G GL+       +VF  L     E           R 
Sbjct: 564 KDAVDSFRLNPEVMVAIIGITAGGVGLDF-SSAQNVVFVELPKSASELL-----QAEDRA 617

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G   AV +Y   A+NT+DE     L         L+N  KK+ I 
Sbjct: 618 HRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNG-KKDAIR 664


>gi|222640173|gb|EEE68305.1| hypothetical protein OsJ_26567 [Oryza sativa Japonica Group]
          Length = 776

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N      +LF    + G G++L  G + +V   +  +         R  +   
Sbjct: 643 QLAMDQFNGSADAKVLFGSIKAFGEGISL-VGASRIVILDVHLNPSVT-----RQAIGST 696

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K+ VFVY L+A ++ +E   +    K  I
Sbjct: 697 FRPGQKKKVFVYRLVAADSPEEKAHETAFNKEVI 730


>gi|317482924|ref|ZP_07941929.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
            [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915613|gb|EFV37030.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
            [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1899

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            ++      G    +      +   G+I +L       G G N+Q     +      W   
Sbjct: 1532 QIAFVHDAGDNPARREQLFAKVRSGEIRVLMGSTQKLGTGTNVQERLAAIHDLDCPWRPA 1591

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +Q + RI    QRQ      V  Y  + + T D    Q +  K      L+++
Sbjct: 1592 DLEQRLGRI----QRQGNTYDHVRDYRYVTEGTFDAYSYQTVERKQRFISQLMSS 1642


>gi|89885953|ref|YP_516151.1| SNF2-related [Rhodoferax ferrireducens T118]
 gi|89347951|gb|ABD72153.1| SNF2-related [Rhodoferax ferrireducens T118]
          Length = 582

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 5/140 (3%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            + A E  +        +               +    +  +   T + +  G   ++  
Sbjct: 401 MLMASEEKVILFGWHREVYGIWLELLAEFKPMLYTGSESPKQKAATKEAFVNGDCRVMII 460

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +      LQ    + VF  L W    H+Q   R       + G       Y+L++++
Sbjct: 461 SLRAGAGLDGLQRVCKVGVFGELDWSPGVHEQCGGR-----YWRDGQDEPSLAYFLLSED 515

Query: 175 TIDELVLQRLRTKSTIQDLL 194
             D ++   L  K    D +
Sbjct: 516 GSDPVIADILGLKKGQIDGV 535


>gi|310827499|ref|YP_003959856.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
 gi|308739233|gb|ADO36893.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
          Length = 2497

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +     ++  +  + +L       G G+N Q     L      W   + +Q
Sbjct: 2131 FIHDAGTDKQKTALFKKVRKADVRVLMGSTEKMGAGMNAQDKLIALHHADCPWRPADLEQ 2190

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  I + T D    Q +  K      ++ +
Sbjct: 2191 QEGRIVR----QGNQYEEVNVYRYITEGTFDAYSWQVIEQKQQFISQIMTS 2237


>gi|291530979|emb|CBK96564.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2949

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2566 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2625

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2626 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2672


>gi|222637395|gb|EEE67527.1| hypothetical protein OsJ_24993 [Oryza sativa Japonica Group]
          Length = 1174

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 11/168 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDKD 97
                E      +  +     +  I  A+   ++     F ++            +  + 
Sbjct: 542 HFIMKEPADNGSLDSQ--SNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRIDGSTSPRER 599

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +    ++ +      + G GL+       +VF  L     E           R 
Sbjct: 600 KDAVDSFRLNPEVMVAIIGITAGGVGLDF-SSAQNVVFVELPKSASELL-----QAEDRA 653

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G   AV +Y   A+NT+DE     L         L+N  KK+ I 
Sbjct: 654 HRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNG-KKDAIR 700


>gi|157872353|ref|XP_001684725.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127795|emb|CAJ06200.1| hypothetical protein LMJF_30_1300 [Leishmania major strain
           Friedlin]
          Length = 1235

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
           +V Y ++   A   +    G +  +   +++ +  +           + G G+NLQ   +
Sbjct: 776 LVDYLYSRGWADHAEVLTGGSSEAERLTSVRRFREDPGCLFFLLSIKAGGCGINLQA-AH 834

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++V     + +       E   + R  + G +  V   YL   ++ ++ V QR   K+  
Sbjct: 835 MVVLVDRDYTVTN-----EDQALARVYRIGQRYTVRAVYLATTDSSEQHVAQRATAKNKP 889

Query: 191 QDLLLNA 197
           +  ++N 
Sbjct: 890 RQAIIND 896


>gi|206890396|ref|YP_002248483.1| swi/snf family helicase_2 [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742334|gb|ACI21391.1| swi/snf family helicase_2 [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 540

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM--IERIGVTRQRQAGFKRAVFVYYLIA 172
              +  H   L      +       +     +   +      R  + G K+ VFV  L  
Sbjct: 429 TSVTVQHIWALISKLKQICNLDPISNESCKLEYLPVAIQTEDRTHRIGQKKTVFVSSLFT 488

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNAL 198
            NTI+E +   L  K  +   +++ L
Sbjct: 489 VNTIEERIQNILNKKKQLFKEVIDHL 514


>gi|71029760|ref|XP_764523.1| DNA helicase [Theileria parva strain Muguga]
 gi|68351477|gb|EAN32240.1| DNA helicase, putative [Theileria parva]
          Length = 941

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 46/212 (21%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA 74
            +  +++  +  S   K  QL             +       K +E I+E  N   I   
Sbjct: 720 YKEGDVKRAH-MSLMAKLFQLT-----------GESKTKGVCKYIEEILENQNKFIIFAH 767

Query: 75  YHFNSDLARL--------QKAFPQGRTLDKDPCTIQEWN--------------------- 105
           + F  D                     ++     +  +                      
Sbjct: 768 HMFMMDAIEDTLRSKKVGYIRIDGSTKMNDRAKLVNLFQNTNESTKHEGKVDKVEDEDSP 827

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +      SCG GLNL    + ++F  L+W      Q  +R+             +
Sbjct: 828 DYTVRVALLSLTSCGVGLNLTS-SSTVIFAELYWVPGVLLQAEDRVHRI----GTKFNKI 882

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + YLIAQN+++E++ + +  K       L+ 
Sbjct: 883 NINYLIAQNSVEEVMWKVINKKYKTVTSTLDG 914


>gi|291227441|ref|XP_002733693.1| PREDICTED: RAD54 homolog B-like [Saccoglossus kowalevskii]
          Length = 921

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 80/251 (31%)

Query: 1   MKQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE--------- 50
           +K Y++         +   +              +L N  V+       ++         
Sbjct: 595 LKVYNQLISSSIIRSVLTSSYNGMTHLLCLSALKKLCNHPVFVYRHAKLQDETCVDGEEN 654

Query: 51  --------------------------VHDEKIKALEVIIEKANA----APIIVAYHFNSD 80
                                         K+  L  +++  +       ++V  ++   
Sbjct: 655 VQEILYRDVCSSFPERYRDESNAVDYTDSGKLIVLAAMLKSFHNDTPQQRVVVVSNYTQT 714

Query: 81  LARLQK-AFPQGRTLDK---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYG 128
           L  LQ+    +G T  +             +  +        +      + G GLNL  G
Sbjct: 715 LDLLQQLCDKEGYTYGRLDGSTPTATRQDIVNRFTSKYSDQFVFLLSCKAGGVGLNL-IG 773

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
              L+ + + W+     Q                            +I+E + QR  +K 
Sbjct: 774 AARLILYDIDWNPANDLQ---------------------------GSIEEKIYQRQISKQ 806

Query: 189 TIQDLLLNALK 199
            +   +++  K
Sbjct: 807 GLSGAVVDYRK 817


>gi|156031343|ref|XP_001584996.1| hypothetical protein SS1G_14093 [Sclerotinia sclerotiorum 1980]
 gi|154699495|gb|EDN99233.1| hypothetical protein SS1G_14093 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1098

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
               G         + ++     W+ +          + R  + G K    VY L++Q T
Sbjct: 445 ITEAGGLGLNLAAASEVILLDQDWNPQVT-----NQAICRAYRVGLKSPPIVYQLVSQGT 499

Query: 176 IDELVLQRLRTKSTIQDLLLNALK 199
           ++E ++ R+  K  +   +  +++
Sbjct: 500 VEEQMMPRIAKKPYLLAKVTESME 523


>gi|332112207|gb|EGJ12183.1| putative dEAD/DEAH box helicase, SNF2 family protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 911

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 20/211 (9%)

Query: 8   QRELYCDLQGENIEAFNSAS-KTVKCLQLANGA-----VYYDEEKHWKEV----HDEKIK 57
           + E Y +L  +      +      +  ++         +YY + + W E+      +   
Sbjct: 648 KDEGYAELAVDTSNEREALERLLNRLERIDADPKLAALLYYLDREKWLELGVIVFSQYYD 707

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               + E+        A    +   R +          +     +   E +I ++ A   
Sbjct: 708 TARWLAEQLARRYPAEAIGLYAGAGRSRLYQRGDSVSCERETLKKMVAEHQIRIMVAT-D 766

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GLNLQ  G ++    L W+    +Q I RI    Q++      V +  L+ + T+D
Sbjct: 767 AACEGLNLQTLGTLVN-VDLPWNPTRLEQRIGRIKRFGQKRD----TVDMLNLVNEQTVD 821

Query: 178 ELVLQRLRTKS----TIQDLLLNALKKETIH 204
           E +  RL  +      +   + + +K E I 
Sbjct: 822 EKIYDRLSERMRDRYDLFGSIPDTIKDEWID 852


>gi|302831485|ref|XP_002947308.1| hypothetical protein VOLCADRAFT_87560 [Volvox carteri f. nagariensis]
 gi|300267715|gb|EFJ51898.1| hypothetical protein VOLCADRAFT_87560 [Volvox carteri f. nagariensis]
          Length = 1951

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            +GK  +L       G GLNL      +V      D        E   V R  + G  R  
Sbjct: 1819 QGKPRVLLLQLKQGGAGLNLTE-AQHVVLVEPQLDPAA-----EAQAVGRVHRIGQCRPT 1872

Query: 166  FVYYLIAQNTIDELVLQRLRTK---STIQDLL 194
             V+  +  +T++E V +    +     +   +
Sbjct: 1873 HVHRFVVVHTVEEQVYKLATARARGMDLSSAV 1904


>gi|40253498|dbj|BAD05447.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
 gi|40253701|dbj|BAD05643.1| putative SNF2 domain/helicase domain-containing protein [Oryza
           sativa Japonica Group]
          Length = 769

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N      +LF    + G G++L  G + +V   +  +         R  +   
Sbjct: 636 QLAMDQFNGSADAKVLFGSIKAFGEGISL-VGASRIVILDVHLNPSVT-----RQAIGST 689

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K+ VFVY L+A ++ +E   +    K  I
Sbjct: 690 FRPGQKKKVFVYRLVAADSPEEKAHETAFNKEVI 723


>gi|159479316|ref|XP_001697739.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158274107|gb|EDO99891.1| SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 876

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 42/180 (23%)

Query: 24  NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR 83
            + +   + L+  +G        H +EV +   + L+ +                  L  
Sbjct: 609 EAKAFLTRLLERVSGPCKVLVFAHHQEVLNGLQEHLKQV---------------RVQLKV 653

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           +           +    +  +                          ++VF  L      
Sbjct: 654 MHMRIDGSTPAHERDKAVAAFQRLGPR---------------TPRVQVVVFVELDQSPSL 698

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-------TIDELVLQRLRTKSTIQDLLLN 196
                      R  + G    V VYYL+A+        T+DE +   L  K  + ++ L+
Sbjct: 699 LV-----QAEDRAHRVGQAAHVHVYYLMAKGYTLRHAGTLDEQIWAMLERKRFVCEVDLD 753


>gi|118088342|ref|XP_419651.2| PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus
            gallus]
          Length = 1681

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   +  ++ L+ I  K   A  +V   +   L  + KA             I ++ 
Sbjct: 1504 GSHSTKVEAVVRTLKRIQFKDPGAKSLVFSTWQDVLDIIAKALYDNNMTFSQINGISKFQ 1563

Query: 106  --------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    + KI +L     +  +GLN+      ++      +            + R  
Sbjct: 1564 ENLSAFKYDPKINILLLPLHTGSNGLNI-IEATHVLLVEPILNPAHEL-----QAIGRVH 1617

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  ++  V+  + + TI+E +   L+
Sbjct: 1618 RIGQTKSTIVHRFLIKATIEERMQTMLK 1645


>gi|213401273|ref|XP_002171409.1| E3 ubiquitin-protein ligase SHPRH [Schizosaccharomyces japonicus
            yFS275]
 gi|211999456|gb|EEB05116.1| E3 ubiquitin-protein ligase SHPRH [Schizosaccharomyces japonicus
            yFS275]
          Length = 1383

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                R            K   +IQ++       +L  H  S   GL L      ++    
Sbjct: 1238 HLSFRANDISFVKFDGRKRGKSIQDFVKNPTKQVLTLHAHSQSSGLTL-IAATHVILCEP 1296

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              +            ++R  + G  +   VY  +  N+I+E +L+    K  
Sbjct: 1297 LLNPSLEL-----QAISRVHRIGQTKPTSVYVYVTDNSIEEEILRLSIQKRQ 1343


>gi|188994741|ref|YP_001928993.1| SNF2-related helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188594421|dbj|BAG33396.1| SNF2-related helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 965

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + E+       +     +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 492 RAALVDEFRHRAT--IMIATEAAAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC----- 543

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V   + + N  D  V + L  K  + D +  A
Sbjct: 544 HRYGQRHDVVVINFLNKSNAADRRVYELLDEKFRLFDGVFGA 585


>gi|224147596|ref|XP_002336506.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
 gi|222835795|gb|EEE74230.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
          Length = 387

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 97  DPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++  +N      + F    +CG G++L  G + ++   +  +         R  + R
Sbjct: 207 REWSMDRFNNSIDAKVFFGSIKACGEGISL-VGASRIIILDVHLNPSVT-----RQAIGR 260

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G  + V+ Y L+A ++ +E        K  I  +
Sbjct: 261 AFRPGQTKKVYAYRLVAADSPEEEDHTTCFRKEAIAKM 298


>gi|323485276|ref|ZP_08090626.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
           WAL-14163]
 gi|323401454|gb|EGA93802.1| SNF2 family Superfamily II DNA/RNA helicase [Clostridium symbiosum
           WAL-14163]
          Length = 451

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +   NS +K +   QL              + H EK++ L  ++E      +I+ Y+F 
Sbjct: 284 ELVGDNSLTKMLYARQLCG------------QWHKEKLEGLRDLVESTED-RLIIFYNFT 330

Query: 79  SDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           ++L  +QK           ++     +  +++    + F    +   G N Q   N +++
Sbjct: 331 AELEAMQKKLADLNRPYSVVNGSKKDLTAYDQADDSITFIQYQAGAMGGNYQK-ANKVIY 389

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F+L                 R  + G  +  F YYL+ + T++E  L  L+    + D L
Sbjct: 390 FTLPLGKGSCDIWE--QSKKRIHRIGQAKPCFYYYLLVKGTVEEKNLAALKEGKELTDEL 447

Query: 195 L 195
            
Sbjct: 448 F 448


>gi|291524354|emb|CBK89941.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2929

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2546 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2605

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2606 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2652


>gi|325982151|ref|YP_004294553.1| SNF2-like protein [Nitrosomonas sp. AL212]
 gi|325531670|gb|ADZ26391.1| SNF2-related protein [Nitrosomonas sp. AL212]
          Length = 951

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + E    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 487 RSALVDYFREEG-RIMIAT-EAGAEGINLQF-CSLVVNYDLPWNPQRIEQRIGRC----- 538

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   +  +N  D+ V + L  K  + + +  A
Sbjct: 539 HRYGQKHDVVVVNFLNRKNAADKRVFELLAEKFKLFEGVFGA 580


>gi|313124725|ref|YP_004034984.1| hypothetical protein LDBND_1992 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281288|gb|ADQ62007.1| Hypothetical protein LDBND_1992 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 878

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  A+       GR+++     +  + E     +     +   GLNLQ+  N ++ + 
Sbjct: 464 YQAWQAKNYGNANYGRSVEYKHAIVDYFRENAK--ILICTDAGSEGLNLQF-CNTVINYD 520

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+  + +Q I R       + G +  V    L+  QN  D+ V + L  K  + + + 
Sbjct: 521 LPWNPMKIEQRIGRC-----HRYGQQNDVVAINLLNTQNEADKRVYEILSEKFKLFESVF 575

Query: 196 NA 197
            A
Sbjct: 576 GA 577


>gi|302414736|ref|XP_003005200.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356269|gb|EEY18697.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 381

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG-KIPLL 112
           E  +  ++I+   N             +      + +  T  +    I  +N   K  ++
Sbjct: 122 EHYEHEKIIVFYENENTAWYIASMLDVIQIEHLIYAKTLTQKRKAQYINTFNNNTKFRVI 181

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                   +GL++    + + F +   + +     +E   + R R+   ++AV V  L+ 
Sbjct: 182 LMDITQAAYGLDM-RAASRIYFLNPVLNPQ-----VEAQAIGRARRISQQKAVSVETLVL 235

Query: 173 QNTIDELVLQRLRTKSTIQDLL 194
           + +++E+++ R + K +  + +
Sbjct: 236 RGSLEEVIIMR-KHKMSQAEHI 256


>gi|291548670|emb|CBL24932.1| Superfamily II DNA/RNA helicases, SNF2 family [Ruminococcus torques
           L2-14]
          Length = 451

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +   NS +K +   QL              + H EK++ L  ++E      +I+ Y+F 
Sbjct: 284 ELVGDNSLTKMLYARQLCG------------QWHKEKLEGLRDLVESTED-RLIIFYNFT 330

Query: 79  SDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           ++L  +QK           ++     +  +++    + F    +   G N Q   N +++
Sbjct: 331 AELEAMQKKLADLNRPYSVVNGSKKDLTAYDQADDSITFIQYQAGAMGGNYQK-ANKIIY 389

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           F+L                 R  + G  +  F YYL+ + T++E  L  L+    + D L
Sbjct: 390 FTLPLGKGSCDMWE--QSKKRIHRIGQAKPCFYYYLLVKGTVEERNLAALKEGKELTDEL 447

Query: 195 L 195
            
Sbjct: 448 F 448


>gi|298286470|dbj|BAD92550.2| SWI/SNF-related matrix-associated actin-dependent regulator of
            chromatin a4 variant [Homo sapiens]
          Length = 1165

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 37/177 (20%)

Query: 3    QYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEKHWKEVH---- 52
             Y   Q +      G   +           +  ++  ++ N    +   +     H    
Sbjct: 965  LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT 1024

Query: 53   ------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ-------- 90
                          K + L+ I+ K  A    +++     S +  ++  F          
Sbjct: 1025 GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL 1084

Query: 91   --GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  +     ++ +NE      +      + G GLNLQ   + ++ F   W+  +
Sbjct: 1085 DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQ 1140


>gi|225388674|ref|ZP_03758398.1| hypothetical protein CLOSTASPAR_02410 [Clostridium asparagiforme
           DSM 15981]
 gi|225045272|gb|EEG55518.1| hypothetical protein CLOSTASPAR_02410 [Clostridium asparagiforme
           DSM 15981]
          Length = 657

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +      +   G++ +L       G G+++Q     L      W   + + 
Sbjct: 272 FIHDADTDARKKELFSKVRSGQVRVLMGSTQKMGAGMDVQDRLVALHDLDCPWRPGDLEL 331

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V +Y  + + T D  + Q +  K      ++ +
Sbjct: 332 RKGRIVR----QGNKNKKVHIYRYVTEGTFDSYLWQTVENKQKFISQIMTS 378


>gi|76156662|gb|AAX27825.2| SJCHGC07730 protein [Schistosoma japonicum]
          Length = 135

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                           +    I  +N+      L      +   G+NL  G N +V F  
Sbjct: 40  TRNVHYFRLDGSTNASEREKLINNFNDPKNPAKLFLMSTRAGCLGVNL-VGANRVVGFDA 98

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            W+              R  + G  +  ++Y L + NT+
Sbjct: 99  SWNPCHDC-----QSRCRVYRYGQVKPCYIYRLGSDNTM 132


>gi|196250353|ref|ZP_03149046.1| helicase domain protein [Geobacillus sp. G11MC16]
 gi|196210242|gb|EDY05008.1| helicase domain protein [Geobacillus sp. G11MC16]
          Length = 1057

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G ++D+    ++++    + ++ A   + G  +NLQ+  N ++ + + W+    +Q + R
Sbjct: 511 GFSMDQRRAEVEKFRN-HVQIMLAT-DAGGESINLQF-CNQMINYDIPWNPNRLEQRMGR 567

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           I      + G K  VFV+ L+A NT +  VL RL  K    
Sbjct: 568 I-----HRIGQKNEVFVFNLVAGNTREGDVLIRLLEKMEQM 603


>gi|291336801|gb|ADD96336.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C700]
          Length = 239

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           + A   A    K  Q+ NG V  +          +        I+      I + Y F +
Sbjct: 46  VVADTGAKVMSKLKQIYNGHVITERHGAIIFDKSK-----AEYIKNNFKGKIAILYCFIA 100

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +   L++ F      D+       +N     +      SC  G+NL  G + L+F  + +
Sbjct: 101 EGKMLREYF-----GDRATDDPDVFNAVSGSVFIGQVKSCREGVNL-SGADHLIFMGIDY 154

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
               + Q  ER     + +        V+Y+ A   I+  V   ++ K 
Sbjct: 155 SALSYLQGRERASFLGRDRKN-----KVHYIFADKGIELKVYDVVKLKE 198


>gi|229892402|gb|ACQ89838.1| helicase [Enterococcus faecalis]
          Length = 2727

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              +   +  T  +      +   G++ +L       G G N+Q     +      W   +
Sbjct: 2356 QVRFIHEATTDAQKKELFAKVRSGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSD 2415

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Q   RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 2416 LEQRQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2465


>gi|21229999|ref|NP_635916.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66766875|ref|YP_241637.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188989950|ref|YP_001901960.1| putative DNA-binding protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111516|gb|AAM39840.1| helicase [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66572207|gb|AAY47617.1| helicase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167731710|emb|CAP49888.1| putative DNA-binding protein [Xanthomonas campestris pv.
           campestris]
          Length = 967

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + +     +     + G G+NLQ+  ++LV + L W+ +  +Q I RI     
Sbjct: 512 KAAVVEAFRDH--RDVLITTEAGGEGINLQF-CSLLVNYDLPWNPQRVEQRIGRI----- 563

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   +  +N  D+LV + L  K  + D +  A
Sbjct: 564 HRYGQKSDVVVVNFVNRKNRADQLVFELLEKKFKLFDGVFGA 605


>gi|302416787|ref|XP_003006225.1| E3 ubiquitin-protein ligase SHPRH [Verticillium albo-atrum VaMs.102]
 gi|261355641|gb|EEY18069.1| E3 ubiquitin-protein ligase SHPRH [Verticillium albo-atrum VaMs.102]
          Length = 1401

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---A 87
            K  Q+ +      E        D  ++ L  + E    A  IV   +   L  +      
Sbjct: 1144 KLAQIRD---VDLEGPPLTTKVDSVVRHLLWLRESDPGAKSIVFSQYRDFLQVIGSALSR 1200

Query: 88   FPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G T    P  +Q +  +  +     H  +   GLNL    + +       +      
Sbjct: 1201 SRIGYTSIDKPNGVQRFKEDAGLECFLLHGRAQSSGLNLVN-ASHVFLCEPLLNTA---- 1255

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
             IE   + R  + G +    V+  + + T++E +   L  K  +Q 
Sbjct: 1256 -IELQAIARVDRIGQQHETTVWLYLIEGTVEESIYN-LSVKRRLQH 1299


>gi|308803538|ref|XP_003079082.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
            superfamily (ISS) [Ostreococcus tauri]
 gi|116057536|emb|CAL51963.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
            superfamily (ISS) [Ostreococcus tauri]
          Length = 2061

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 6/172 (3%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                + A +  ++      + +G V     K    V   K    +  I      P ++  
Sbjct: 1880 DSSVVTAVSLGTEVGAKAGMTDGGVGVHGSKIIDLVKHIKSVPDDERILVFVQFPDLMLQ 1939

Query: 76   HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGG 129
              N+      K      ++ +    + E+ +  +       LL         G NL    
Sbjct: 1940 VSNALNEAGIKTLKLKGSVHQQTGALDEFQKENLKKDDARVLLLLSRDESASGANLTTAN 1999

Query: 130  NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            + +    L  +  +     E   + R R+ G +R V ++  IA+++ID  +L
Sbjct: 2000 HAIFVHPLLTNSAQEYIASETQAIGRIRRYGQQREVRIWRFIARDSIDSEIL 2051


>gi|297810883|ref|XP_002873325.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319162|gb|EFH49584.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1194

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 8/161 (4%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
             +    +   +++  +       ++   +   +     F  D                 
Sbjct: 540 HPLLSGLDYTPEDIDGDTSSTKM-VVFAHHHKVLDGIQEFMCDKGIGFVRIDGMTLPRDR 598

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +Q +    ++ +      + G GL+       +VF  L                 R 
Sbjct: 599 QLAVQSFQFSSEVKVAIIGVEAGGVGLDF-SAAQNVVFLELPKTPSLLL-----QAEDRA 652

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G   AV VY   A++T+DE   Q L  K        + 
Sbjct: 653 HRRGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISSTTDG 693


>gi|160894868|ref|ZP_02075642.1| hypothetical protein CLOL250_02418 [Clostridium sp. L2-50]
 gi|156863299|gb|EDO56730.1| hypothetical protein CLOL250_02418 [Clostridium sp. L2-50]
          Length = 862

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ + +    +L     S   GLNLQ+  N ++ + 
Sbjct: 453 YKAWKARNYGKYVGSRNVELKNAIVEAFRDEY-KILLVT-DSGSEGLNLQF-CNTIINYD 509

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 510 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 564

Query: 196 NA 197
            A
Sbjct: 565 GA 566


>gi|108759757|ref|YP_629003.1| putative RNA polymerase-associated protein RapA [Myxococcus xanthus
           DK 1622]
 gi|108463637|gb|ABF88822.1| putative RNA polymerase-associated protein RapA [Myxococcus xanthus
           DK 1622]
          Length = 1022

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +     L +    +  + + + P +       G G N Q+  + LV + L W     +Q 
Sbjct: 546 YHGDLPLVERDRQVARFRDPEGPKVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQR 604

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKK 200
           I R+      + G    V ++      T+   VL  L     +        D +L  ++ 
Sbjct: 605 IGRLD-----RIGQTHPVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVEA 659

Query: 201 ETIHV 205
               +
Sbjct: 660 RLAEL 664


>gi|58803049|gb|AAW82648.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 1017

 Score = 54.0 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +     L +    +  + + + P +       G G N Q+  + LV + L W     +Q 
Sbjct: 541 YHGDLPLVERDRQVARFRDPEGPKVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQR 599

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKK 200
           I R+      + G    V ++      T+   VL  L     +        D +L  ++ 
Sbjct: 600 IGRLD-----RIGQTHPVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVEA 654

Query: 201 ETIHV 205
               +
Sbjct: 655 RLAEL 659


>gi|322689353|ref|YP_004209087.1| hypothetical protein BLIF_1168 [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460689|dbj|BAJ71309.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 2148

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            ++      G    +      +   G+I +L       G G N+Q     +      W   
Sbjct: 1418 QIAFVHDAGDNPARREQLFAKVRSGEIRVLMGSTQKLGTGTNVQERLAAIHDLDCPWRPA 1477

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + +Q + RI    QRQ      V  Y  + + T D    Q +  K      L+++
Sbjct: 1478 DLEQRLGRI----QRQGNTYDHVRDYRYVTKGTFDAYSYQTVERKQRFISQLMSS 1528


>gi|148656660|ref|YP_001276865.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568770|gb|ABQ90915.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 969

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 21/161 (13%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL-------------DK 96
           HD K++    +           I+   + +    +     +                 ++
Sbjct: 462 HDAKLRRAVELTRHLIDEGFHPILWCRYVATAEYVADQVQRDLPDGVQVACVTGRMGDEE 521

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I E +  +  +L A       G+NLQ     +V + L W+    +Q   R+    Q
Sbjct: 522 RQARIAELDADRPRVLVAT-DCLSEGVNLQSLFTAVVHYDLPWNPNRLEQREGRVDRYGQ 580

Query: 157 RQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLN 196
                   V V     ++  +D  VL  L  K+      L 
Sbjct: 581 PAPR----VRVIRFFGRDNPVDGAVLDVLLNKARTIHRTLG 617


>gi|77164070|ref|YP_342595.1| helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254435267|ref|ZP_05048774.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|76882384|gb|ABA57065.1| Helicase-like protein [Nitrosococcus oceani ATCC 19707]
 gi|207088378|gb|EDZ65650.1| Helicase conserved C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 910

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
           +          +     +   E ++ L+ A   +   GLNLQ  G ++    L W+    
Sbjct: 736 RLYHGGETVQMEREPLKRLVAEREVRLMVAT-DAACEGLNLQMLGTLIN-VDLPWNPTRL 793

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNALKK 200
           +Q + RI    Q +      V +  L+ Q T+DE + +RL  +      +   L + LK 
Sbjct: 794 EQRLGRIKRLGQLR----ENVDMLNLVYQGTVDETIYERLSERMRDRYDLFGALPDTLKD 849

Query: 201 ETIH 204
           E I 
Sbjct: 850 EWIE 853


>gi|297821869|ref|XP_002878817.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324656|gb|EFH55076.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 786

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 23/190 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +   E+  ++   +    N     VK     N  +    +     +  ++      ++ 
Sbjct: 548 DEM-DEIIKEIDVTDGVKTNFFMGLVKLCDYTNEKILVVSQYVIPLIFLQR------LVA 600

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           K              D               ++    Q  N     + F    +C   + 
Sbjct: 601 KIKGWK---------DGKETFMIKGDTSLSAREMSINQFNNSNDAKIFFVSIKACNEQIG 651

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L  G   ++   +  +       + R  +      G +  V+ Y L+A +T +E   + +
Sbjct: 652 LT-GATRVLMLDIIANP-----CMARQAIELAYHPGQQNKVYSYRLVAADTSEED-EEII 704

Query: 185 RTKSTIQDLL 194
             K  I   +
Sbjct: 705 AAKKEIISGI 714


>gi|295099470|emb|CBK88559.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2929

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2546 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2605

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2606 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2652


>gi|320009544|gb|ADW04394.1| SNF2-related protein [Streptomyces flavogriseus ATCC 33331]
          Length = 606

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +L ++PA+ G G++L    +  V+    +      Q ++RI              
Sbjct: 482 DPDCSVLISNPATLGEGISLHQVCHDAVYVDRDFQAGRFLQSLDRIHRLG---LAPDTET 538

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            V  L A  ++D++V  RL  K      +L+  + + +
Sbjct: 539 RVTVLTAMGSVDDVVSMRLAEKLEFMGSILDDPEVQQL 576


>gi|145610845|ref|XP_368376.2| hypothetical protein MGG_00868 [Magnaporthe oryzae 70-15]
 gi|145018188|gb|EDK02467.1| hypothetical protein MGG_00868 [Magnaporthe oryzae 70-15]
          Length = 861

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 94  LDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    I+ + +     ++F      G GLNLQ   N+++  ++WW      Q  E   
Sbjct: 747 PVERERVIRNFTDATGPRVMFVSRGVGGQGLNLQA-ANVVIQCNVWWK-----QSWEEHA 800

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             R  + G  R VFVY + A+  +D    +R   K+    +++  + +E I 
Sbjct: 801 WGRVHRPGQTRPVFVYQIEARCQVDAYKKERRDAKNETNSMIMERITREDID 852


>gi|119714054|ref|YP_919196.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525963|gb|ABL79333.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 1925

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 88   FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +             G + +L       G G N+Q     L      W   +  
Sbjct: 1514 RFMHEANNDRAKARLFEQARTGHVSVLIGSTEKMGVGTNVQRRAVALHHVDCPWRPADLA 1573

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q   RI      Q     +V VY  + +++ D  + Q +  K+   + L+
Sbjct: 1574 QRDGRIMR----QGNLNESVQVYRYVTESSFDTYLWQTVERKAKFINQLM 1619


>gi|126337900|ref|XP_001367889.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1
           [Monodelphis domestica]
          Length = 965

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 93  TLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGG-NILVFFSLWWDLEEHQQMIER 150
           +        Q++    K  +      +    + L +   +++VF  L+W+          
Sbjct: 777 SSSDRQTLCQQFQLSEKCAVAVLSITAAN--MGLTFSATDLVVFAELFWNPGVLI----- 829

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 830 QAEDRVHRIGQTSSVTIHYLVARGTADDYLWPLIQEKIKV 869


>gi|224107415|ref|XP_002314473.1| hypothetical protein POPTRDRAFT_229741 [Populus trichocarpa]
 gi|222863513|gb|EEF00644.1| hypothetical protein POPTRDRAFT_229741 [Populus trichocarpa]
          Length = 127

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 20/131 (15%)

Query: 54  EKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTI 101
            K++ L+ ++ K       ++        L  +++                +       I
Sbjct: 1   GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTWKQYRYLRLDGHTSGGDRGSLI 60

Query: 102 QEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             +N  +    +      + G G+NLQ   + ++ F   W+ +     ++     R  + 
Sbjct: 61  DRFNQQDSPYFIFLLSIRAGGVGVNLQA-ADTVIIFDTDWNPQ-----VDLQAQARAHRI 114

Query: 160 GFKRAVFVYYL 170
           G KR V V   
Sbjct: 115 GQKRDVLVLRF 125


>gi|56475781|ref|YP_157370.1| SNF2 family helicase [Aromatoleum aromaticum EbN1]
 gi|56311824|emb|CAI06469.1| helicase (Snf2 family) [Aromatoleum aromaticum EbN1]
          Length = 965

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +D+    I  + E     +     +   G+NLQ+  +++V + L W+ +  +Q I R
Sbjct: 489 SPAVDRRTALIDYFREHA--EILIATEAAAEGVNLQF-CSLVVNYDLPWNPQRVEQRIGR 545

Query: 151 IGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G +  V V   +  +N  D  VL+ L+ K  + D +  A
Sbjct: 546 C-----HRYGQRFDVVVINFLNQRNEADRRVLELLQDKFRLFDGVFGA 588


>gi|46139439|ref|XP_391410.1| hypothetical protein FG11234.1 [Gibberella zeae PH-1]
          Length = 909

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 23/105 (21%)

Query: 93  TLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
                   +  + N+  + ++    +    G                         +E  
Sbjct: 806 PQRSRQKVVDNFRNDLSVRVMLLTLSCGAAGN----------------------PTLEEQ 843

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            + R  + G  + V       +N+ +  V++R  +K  +  LLL+
Sbjct: 844 ALARIHRIGQTQEVTTVRFFMRNSFEHQVIKRQESKKYLAGLLLS 888


>gi|12043930|gb|AAG47648.1| HepA-related protein HARP [Mus musculus]
          Length = 900

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 54  EKIKALEVI---IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--PCTIQEWNEGK 108
            KI  +      +  +     +V  H    L  + K   +             +      
Sbjct: 666 AKIPCVVEYILDLLDSGREKFLVFAHHKVILDAVAKELERKNVQHIRIDGSCQRFQLSKG 725

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +      +   GL      +++VF  L+W+              R  + G   +V ++
Sbjct: 726 HTVALLSITAANMGLTF-STADLVVFAELFWNPGVLI-----QAEDRVHRIGQTNSVSIH 779

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
           YL+A+ T D+ +   ++ K  +
Sbjct: 780 YLVAKGTADDYLWPLIQEKIKV 801


>gi|116072526|ref|ZP_01469793.1| putative DEAD/H helicase [Synechococcus sp. BL107]
 gi|116065048|gb|EAU70807.1| putative DEAD/H helicase [Synechococcus sp. BL107]
          Length = 1076

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              T + + EG   +L     +   GLN Q+ G ++  + + W+    +Q I RI    Q
Sbjct: 817 REATKRGFKEGNAEILLCT-DAAAEGLNFQFCGALIN-YDMPWNPMRVEQRIGRIDRIGQ 874

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                     +  L    T++  V + L+ +  + + ++  L+
Sbjct: 875 THEQM----QIVNLHLDGTVEADVYRALKGRIAMFEQVVGKLQ 913


>gi|225448562|ref|XP_002273775.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1306

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 95   DKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +    + ++ E  G   +L A   +C  G++L    + ++     W+  +      +  
Sbjct: 1109 FERGRVMDQFEEPGGASKVLLASITACAEGISLTA-ASRVILLDTEWNPSKQ-----KQA 1162

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            V R  + G +R V+VY L+  +T++E    R   K  +  ++ + 
Sbjct: 1163 VARAFRPGQERVVYVYQLLETDTLEEEKNSRTNWKEWVSSMIFSE 1207


>gi|320104893|ref|YP_004180484.1| helicase domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319752175|gb|ADV63935.1| helicase domain protein [Isosphaera pallida ATCC 43644]
          Length = 1166

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 24/191 (12%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--- 85
             K  Q A   V   +++ W E+        ++  E      II+       L  L    
Sbjct: 460 LTKLEQQARAVVTSGQDRKWDELSKLLQNNPQMHDESGRQRKIIIFSEHRDTLNYLHAKI 519

Query: 86  ---------KAFPQGRTLDKDPCTIQ--EWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                         G     D   IQ    ++ ++ +L A  A+   G+NLQ   +++V 
Sbjct: 520 AGVLGNANAIVTIHGGINRDDRLRIQALFRSDPEVRVLVATDAAG-EGVNLQ-CAHLMVN 577

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           + L W+    +Q   RI      + G      ++ L+A+ T +  V  RL  K   +   
Sbjct: 578 YDLPWNPNRLEQRFGRI-----HRIGQTEVCHLWSLVAKETREGAVWYRLLEKIATEC-- 630

Query: 195 LNALKKETIHV 205
             ALK +  ++
Sbjct: 631 -EALKGKVFNI 640


>gi|288870537|ref|ZP_06114461.2| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
 gi|288866818|gb|EFC99116.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
          Length = 1435

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 15/178 (8%)

Query: 31   KCLQLA----NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY-------HFNS 79
            K  QL     +       +K  K++ +  +  LE  I      P    Y           
Sbjct: 985  KLTQLVFCDISTPQAAPYKKAAKQLDNPLLHGLEEAIPLDEPEPAFTIYEDIRQKLIAQG 1044

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
              A       +  T  +      +   G++ +L    A  G G N+Q     L      W
Sbjct: 1045 MPADQIAFIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPW 1104

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +  Q   RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 1105 RPGDLAQRKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1158


>gi|319938578|ref|ZP_08012968.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319806250|gb|EFW02933.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 968

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +      +   G++ +L       G G N Q     L      W   +  Q
Sbjct: 602 FIHDANTDARKQELFNKVRRGQVRVLIGSTQKMGAGTNCQDRLIALHDLDCPWRPSDLIQ 661

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 662 RSGRIIR----QGNKNPEVDIYRYVTEGTFDAYLYQLVENKQRFISQIMTS 708


>gi|311977748|ref|YP_003986868.1| putative ATP-dependent RNA helicase [Acanthamoeba polyphaga
           mimivirus]
 gi|82050866|sp|Q5UR22|YL364_MIMIV RecName: Full=Putative ATP-dependent RNA helicase L364
 gi|55416983|gb|AAV50633.1| SW1/SNF2 helicase (MSV224) [Acanthamoeba polyphaga mimivirus]
 gi|308204359|gb|ADO18160.1| putative ATP-dependent RNA helicase [Acanthamoeba polyphaga
           mimivirus]
          Length = 536

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 65/203 (32%), Gaps = 29/203 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y +   EL  +L+ +  +  N  +K  K  Q               E+    I   + 
Sbjct: 297 EAYEEI-AELMRELEEKKTQCKNHLAKIQKLKQ-------------EIELRKIPIFIEQT 342

Query: 62  IIEKANAAPIIVAYHFNSDLAR------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
            +       +I+  ++ + +        ++      +T D+   +I  +      ++   
Sbjct: 343 QLYLEQGKSVIIFVNYINTMNILSAQLNIKCRICGDQTQDQRQESIALFQANIEKIIICQ 402

Query: 116 PASCGHG---LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             + G G    +L  G   +   +      +         + R  ++G K  V    ++ 
Sbjct: 403 IRAGGVGISLHDLHGGHPRVTLLNFPDSASDLL-----QALGRAPRSGAKSPVLQRIILV 457

Query: 173 QN-TIDELVLQRLRTKSTIQDLL 194
            N   ++ +++ +  K      +
Sbjct: 458 ANVEYEKNIMRSINKKLANISAI 480


>gi|114583214|ref|XP_001153069.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 4 [Pan
           troglodytes]
          Length = 932

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 677 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 734

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 735 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 790

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 791 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 830


>gi|6693791|gb|AAF24984.1|AF082179_1 HepA-related protein HARP [Homo sapiens]
          Length = 954

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 699 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 756

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 757 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 813 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852


>gi|16741295|gb|AAH16482.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
 gi|123981668|gb|ABM82663.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [synthetic construct]
 gi|123996475|gb|ABM85839.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [synthetic construct]
          Length = 954

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 699 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 756

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 757 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 813 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852


>gi|21071060|ref|NP_054859.2| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Homo sapiens]
 gi|187761314|ref|NP_001120679.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Homo sapiens]
 gi|60390962|sp|Q9NZC9|SMAL1_HUMAN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; Short=hHARP;
           AltName: Full=Sucrose nonfermenting protein 2-like 1
 gi|18463933|gb|AAL73034.1|AF432223_1 SMARCAL1 [Homo sapiens]
 gi|7861961|gb|AAF70454.1| HARP [Homo sapiens]
 gi|27696616|gb|AAH43341.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
 gi|62702171|gb|AAX93097.1| unknown [Homo sapiens]
 gi|119590973|gb|EAW70567.1| SWI/SNF related, matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 [Homo sapiens]
          Length = 954

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 699 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 756

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 757 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 813 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852


>gi|121582883|ref|YP_973325.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
 gi|120596145|gb|ABM39583.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
          Length = 1649

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     ++   G+I +L       G G N+Q            W   + +Q
Sbjct: 1281 FAQDYKTTAQKGELHRKVRSGRIRILQGSTELMGFGTNVQDRLVAEHHLDAPWRPRDVEQ 1340

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               RI      Q      VF+Y  + ++T D  + Q L  K+     ++   K E   V
Sbjct: 1341 RDGRIIR----QGNLNEEVFIYRYVTESTFDAYMWQTLERKAGFIAQVMEG-KTEMRSV 1394


>gi|322693650|gb|EFY85503.1| SNF2 family helicase/ATPase, putative [Metarhizium acridum CQMa 102]
          Length = 1355

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 10/149 (6%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ- 102
            +   +    D  ++ L  + E    A  IV   +   L  L+ AF + R        +  
Sbjct: 1116 DGPSFTTKVDTLVRHLLWLRESDPGAKSIVFSQYRDFLHILRNAFRRFRIGHASIDDVNG 1175

Query: 103  ---EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +  + +   H  +   GLNL    + +       +     Q I R+      + 
Sbjct: 1176 IASFKEDPAVEVFLLHARAHSSGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RI 1229

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G +    V+  +   T++E +      + 
Sbjct: 1230 GQQHETTVWLYLVSGTVEESIYNLSVQRR 1258


>gi|218473432|emb|CAV31142.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 1315

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  + +K     ++ N G++ +L A     G GLN+Q     +    + W   + QQ
Sbjct: 1226 FVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQ 1285

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               RI      Q    + V +Y+ I + + D
Sbjct: 1286 RNGRIIR----QGNENKEVDIYHYITKGSFD 1312


>gi|326524448|dbj|BAK00607.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 77

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              WW+       +E     R  + G  + +     + ++T++E +LQ    K  + D  
Sbjct: 1   MDPWWNPA-----VESQAQDRIHRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFDGT 55

Query: 195 LNA 197
           +  
Sbjct: 56  VGD 58


>gi|310796548|gb|EFQ32009.1| SNF2 family domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 968

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 21/164 (12%)

Query: 49  KEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLD--------- 95
                 K+   + II    E+A    II+   F      +                    
Sbjct: 767 VPCPGTKLTVAKEIILQWQEEAPNDKIIIFVEFIKTAVLMGIMLNLEDIPFVYLNGKLTS 826

Query: 96  --KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K           ++ +L A     G  LNL    N ++    WW+     +       
Sbjct: 827 TEKLKAVDTFKTNPEVKILIASMKVGGQALNLT-CANRVIQVDSWWN-----EAAGEQAN 880

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G  +      +  + T+D+ +     +K+   + +L  
Sbjct: 881 GRVNRMGQLKPSHAVVIKVRGTVDDYITDLQDSKTKDIEHVLQD 924


>gi|212543375|ref|XP_002151842.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
 gi|210066749|gb|EEA20842.1| SNF2 family helicase/ATPase, putative [Penicillium marneffei ATCC
            18224]
          Length = 1479

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            + L  + E    A  IV   +   L  L      F  G +  +    IQ +  +      
Sbjct: 1238 RHLMWLREHDPGAKSIVFSQYRDFLGVLATAFSRFKIGYSSVEAKDGIQRFKEDPAAECF 1297

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1298 LLHARAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1351

Query: 173  QNTIDELVLQR 183
             +T++E + Q 
Sbjct: 1352 SDTVEESIYQI 1362


>gi|114583208|ref|XP_516076.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 6 [Pan
           troglodytes]
 gi|114583210|ref|XP_001153008.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 3 [Pan
           troglodytes]
 gi|114583212|ref|XP_001153124.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 5 [Pan
           troglodytes]
          Length = 954

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 699 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 756

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 757 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 813 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852


>gi|6102878|emb|CAB59251.1| hypothetical protein [Homo sapiens]
          Length = 808

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 553 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELERKHVQHIRID 610

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 611 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 666

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 667 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 706


>gi|284053397|ref|ZP_06383607.1| helicase domain protein [Arthrospira platensis str. Paraca]
          Length = 759

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ--KAF 88
           +  Q+  G  +  +  +       K     VI  +       +     + L R +     
Sbjct: 202 QLSQVIEGEFFTPKPHNSDGEIAPKTLPKLVIFTEHRDTLNYLRDRIRTLLGRPEAVVTI 261

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   ++     + +  +  I +L A  A+   G+NLQ    ++V + L W+    +Q 
Sbjct: 262 HGGMGREERKKAEEAFKQDVNIQVLVATDAAG-EGINLQR-AYLMVNYDLPWNPNRLEQR 319

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A  T +  V   L  K  I+   L  
Sbjct: 320 FGRI-----HRIGQTEVCHLWNLVAGETREGDVYLSLLRKLEIEQKALGG 364


>gi|34393589|dbj|BAC83216.1| putative DNA helicase [Oryza sativa Japonica Group]
          Length = 1029

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 11/168 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDKD 97
                E      +  +     +  I  A+   ++     F ++            +  + 
Sbjct: 377 HFIMKEPADNGSLDSQ--SNCQKTIIFAHHLKVLDGVQVFVTEQRIKYVRIDGSTSPRER 434

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              +  +    ++ +      + G GL+       +VF  L     E           R 
Sbjct: 435 KDAVDSFRLNPEVMVAIIGITAGGVGLDF-SSAQNVVFVELPKSASELL-----QAEDRA 488

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + G   AV +Y   A+NT+DE     L         L+N  KK+ I 
Sbjct: 489 HRRGQTNAVNIYIFCARNTLDESHWLHLNQSLFRVSSLMNG-KKDAIR 535


>gi|302501520|ref|XP_003012752.1| hypothetical protein ARB_01003 [Arthroderma benhamiae CBS 112371]
 gi|291176312|gb|EFE32112.1| hypothetical protein ARB_01003 [Arthroderma benhamiae CBS 112371]
          Length = 333

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 57  KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
           + L  + +    A  IV      F   L+ +   F  G +   DP  I+ +  +      
Sbjct: 64  RHLLWLRQHDPGAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECF 123

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 124 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 177

Query: 173 QNTIDELVLQR 183
            NT++E + Q 
Sbjct: 178 ANTVEESIYQI 188


>gi|324510004|gb|ADY44188.1| Chromodomain-helicase-DNA-binding protein 1-like protein [Ascaris
           suum]
          Length = 456

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 27/183 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDE 54
           K Y             +     +  +   +  + A     +D                  
Sbjct: 264 KNYRFLSAAGCAQGDHQGGSRNSLVNIMTQLRKCALHPYLFDGMEPEPFKEGEHLATSSG 323

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC----------TIQ 102
           K+  LE I+   + +   +++       L  +Q  F   R   +              I 
Sbjct: 324 KMMLLERILGFLRKHKHRVLLFSQMTRMLDIVQDYFNYRRWSFERLDGKLKADMRFTAID 383

Query: 103 EWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
            + +    +        + G GL L  G + ++F    ++ +      +     R  + G
Sbjct: 384 NFQKSDSDVFCFLLSTRAGGLGLTLT-GADTVIFIDSDFNPQN-----DIQAAARCHRIG 437

Query: 161 FKR 163
             +
Sbjct: 438 QTK 440


>gi|331090153|ref|ZP_08339041.1| hypothetical protein HMPREF1025_02624 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402099|gb|EGG81671.1| hypothetical protein HMPREF1025_02624 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 872

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +   +       GR+++     +  +       +     +   GLNLQ+  N ++ + 
Sbjct: 459 YKAWQVKNFGKANYGRSVEYKHAIVDYFRHNAK--ILICTDAGSEGLNLQF-CNTVINYD 515

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+  + +Q I R       + G    V    L+  QN  D+ V   L  K  + + + 
Sbjct: 516 LPWNPMKIEQRIGRC-----HRYGQDHDVVAINLLNTQNAADQRVYDILSKKFELFEGVF 570

Query: 196 NA 197
            A
Sbjct: 571 GA 572


>gi|317496497|ref|ZP_07954846.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
 gi|316913300|gb|EFV34797.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
          Length = 1714

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 1162 FIHEANSDKRKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 1221

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  I +NT D  + Q +  K      ++ +
Sbjct: 1222 RAGRIVR----QGNENKEVNIYRYITENTFDAYLWQTIENKQKFISQIMTS 1268


>gi|217978103|ref|YP_002362250.1| helicase domain protein [Methylocella silvestris BL2]
 gi|217503479|gb|ACK50888.1| helicase domain protein [Methylocella silvestris BL2]
          Length = 949

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 77  FNSDLARLQ--KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           + + + R +        RT D     +  + E     +     +   G+NLQ+  +++V 
Sbjct: 467 YKAWIERHKGTDRVTGSRTADIRAALVDYFREKAG--IMIATEAAAEGINLQF-CSMVVN 523

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDL 193
           F L W+ +  +Q I R       + G +  V V   + +N   D+ V + L  K  +   
Sbjct: 524 FDLPWNPQRIEQRIGRC-----HRYGQRYDVVVVNFLNKNNAADQRVYELLAEKFKLFSG 578

Query: 194 LLNA 197
           +  A
Sbjct: 579 VFGA 582


>gi|302660947|ref|XP_003022147.1| hypothetical protein TRV_03750 [Trichophyton verrucosum HKI 0517]
 gi|291186078|gb|EFE41529.1| hypothetical protein TRV_03750 [Trichophyton verrucosum HKI 0517]
          Length = 333

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 57  KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
           + L  + +    A  IV      F   L+ +   F  G +   DP  I+ +  +      
Sbjct: 64  RHLLWLRQHDPGAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECF 123

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
             H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 124 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 177

Query: 173 QNTIDELVLQR 183
            NT++E + Q 
Sbjct: 178 ANTVEESIYQI 188


>gi|256251590|emb|CAR63698.1| putative SNF2 family N-terminal domain containing protein
           [Angiostrongylus cantonensis]
          Length = 284

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G  + V++Y  IAQ T++E + +R  TK +    +++ 
Sbjct: 1   YRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 41


>gi|218134948|ref|ZP_03463752.1| hypothetical protein BACPEC_02853 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990333|gb|EEC56344.1| hypothetical protein BACPEC_02853 [Bacteroides pectinophilus ATCC
           43243]
          Length = 403

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ + +    +L     S   GLNLQ+  N ++ + 
Sbjct: 66  YKAWKARNYGKYVGSRNVELKNAIVEAFRDEY-KILLVT-DSGSEGLNLQF-CNTIINYD 122

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 123 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 177

Query: 196 NA 197
            A
Sbjct: 178 GA 179


>gi|210610976|ref|ZP_03288685.1| hypothetical protein CLONEX_00875 [Clostridium nexile DSM 1787]
 gi|210152201|gb|EEA83208.1| hypothetical protein CLONEX_00875 [Clostridium nexile DSM 1787]
          Length = 862

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +  AR    +   R ++     ++ + +    +L     S   GLNLQ+  N ++ + 
Sbjct: 453 YKAWKARNYGKYVGSRNVELKNAIVEAFRDEY-KILLVT-DSGSEGLNLQF-CNTIINYD 509

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V V  L+  QN  D+ V + L  K  +   + 
Sbjct: 510 LPWNPQKIEQRIGRC-----HRYGQKNDVVVINLLNTQNVADKRVYEILSEKFELFQGVF 564

Query: 196 NA 197
            A
Sbjct: 565 GA 566


>gi|309702945|emb|CBJ02276.1| putative phage protein [Escherichia coli ETEC H10407]
          Length = 286

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 36/46 (78%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
           +QY + ++E++ +L GE IEA N+A+KT+KCLQ+A+GAVY D+   
Sbjct: 241 QQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTDDTGS 286


>gi|310658941|ref|YP_003936662.1| helicase domain-containing protein [Clostridium sticklandii DSM
           519]
 gi|308825719|emb|CBH21757.1| Helicase domain protein [Clostridium sticklandii]
          Length = 856

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                   ++    ++ + E K+ +L  +P +    ++L +  +  ++F   ++L    Q
Sbjct: 719 CIYGSTDFEERDFLLKLFKEKKLDVLITNPHTLAESVSLHHTCHNAIYFEYSYNLVHLLQ 778

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ--------NTIDELVLQRLRTKSTIQDLLLNAL 198
             +RI           +    YYL  +         ++DE + +RL  K T     +   
Sbjct: 779 SKDRIHRLG---LPQDQYTQYYYLQNEFFTIDNDAYSLDERIYERLLEKETTMLQAIENN 835

Query: 199 KKETI 203
           K E +
Sbjct: 836 KLERV 840


>gi|154498713|ref|ZP_02037091.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
 gi|150272253|gb|EDM99451.1| hypothetical protein BACCAP_02704 [Bacteroides capillosus ATCC
           29799]
          Length = 943

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +  + +    ++ A   +   GLNLQ+  +++V + L W+ +  +Q I R    
Sbjct: 481 DRRAALVDYFRD-TAEVMIAT-EAAAEGLNLQF-CSLVVNYDLPWNPQRIEQRIGRC--- 534

Query: 155 RQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   I  +N  D  V   L  K  + D +  A
Sbjct: 535 --HRYGQKSDVVVVNFINQRNFADMRVFSLLSEKFKLFDDVFGA 576


>gi|307249912|ref|ZP_07531886.1| hypothetical protein appser4_7100 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858101|gb|EFM90183.1| hypothetical protein appser4_7100 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 955

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 494 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 547

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + +  + D+ VL+ L  K  +   +L A
Sbjct: 548 --HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 589


>gi|237742749|ref|ZP_04573230.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229430397|gb|EEO40609.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 768

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 400 FIHDANNEKQKDEMFSKVRNGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQ 459

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V VY  + +NT D  + Q +  K      ++ +
Sbjct: 460 RAGRIVR----QGNENKNVEVYRYVTENTFDAYLWQTIENKQKFISQIMTS 506


>gi|225430782|ref|XP_002267239.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 719

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                ++   + R  + G  + V VY L    +I+  +L+R  +K  ++ +++ 
Sbjct: 570 RQNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVIG 623


>gi|157817600|ref|NP_001101692.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Rattus norvegicus]
 gi|221222728|sp|B4F769|SMAL1_RAT RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|149016063|gb|EDL75309.1| Swi/SNF related matrix associated, actin dependent regulator of
           chromatin, subfamily a-like 1 (predicted) [Rattus
           norvegicus]
 gi|195540216|gb|AAI68154.1| Smarcal1 protein [Rattus norvegicus]
          Length = 910

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                      Q++       +      +   GL      +++VF  L+W+         
Sbjct: 714 STPSADREDLCQQFQLSKGHTVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI---- 768

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 769 -QAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLIQEKIKV 808


>gi|1932921|gb|AAB51700.1| putative helicase [Arabidopsis thaliana]
          Length = 117

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            VF Y L+A+ TI+E + +R  TK  +   +++         K+E +H+
Sbjct: 1   PVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHL 49


>gi|297669376|ref|XP_002812875.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 1 [Pongo abelii]
 gi|297669378|ref|XP_002812876.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 2 [Pongo abelii]
 gi|297669380|ref|XP_002812877.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           isoform 3 [Pongo abelii]
          Length = 954

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------NSDLARLQKAFPQ-- 90
           + +       ++    I+ +  ++ ++     +V  H          +L R      +  
Sbjct: 699 ILFFNRTAEAKIPS-VIEYILDLL-ESGREKFLVFAHHKVVLDAITQELGRKHVQHIRID 756

Query: 91  -GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  +     Q++    +  +      +   GL      +++VF  L+W+        
Sbjct: 757 GSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTF-SSADLVVFAELFWNPGVLI--- 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                 R  + G   +V ++YL+A+ T D+ +   ++ K  +
Sbjct: 813 --QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852


>gi|225868848|ref|YP_002744796.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702124|emb|CAW99793.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2916

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +         +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2364 FIHEANSDKQKDELFARVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2423

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2424 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2470


>gi|324500290|gb|ADY40142.1| E3 ubiquitin-protein ligase SHPRH [Ascaris suum]
          Length = 1245

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 13/139 (9%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLA------RLQKAFPQGRTLDKDPCTIQEWN- 105
            D  I+ L  I E+   A  +V     S +       +      +  ++ K   T+ E+  
Sbjct: 1069 DAVIRRLLSIHERDPWAKTLVFTSIPSIIPVISGLLQENNIPYRNYSVGKRQVTLAEFRL 1128

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            + KI +L         GLNL    N ++F     D  +  Q I RI      + G  R +
Sbjct: 1129 DPKIQVLVMPINQGARGLNLT-VANNIIFVEPQLDASQLAQAIGRID-----RIGQTRRM 1182

Query: 166  FVYYLIAQNTIDELVLQRL 184
             +++ +   +I+E +  R+
Sbjct: 1183 MIHHFVVYGSIEEHIHHRI 1201


>gi|219871484|ref|YP_002475859.1| superfamily II DNA/RNA helicase, SNF2 family, ATP-dependent
           [Haemophilus parasuis SH0165]
 gi|219691688|gb|ACL32911.1| superfamily II DNA/RNA helicase, SNF2 family, ATP-dependent
           [Haemophilus parasuis SH0165]
          Length = 950

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 25/164 (15%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           +ANG             H +  +  E  +   N A  I                      
Sbjct: 444 IANGYANQVVSFSGANHHTDAKRVYEQWLADENNAGRITGSPQVDM-------------- 489

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +      ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 490 --RTALIDHFKN-NAQIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 541

Query: 155 RQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   ++ +N  D+ VL+ L  K  + D +  A
Sbjct: 542 --HRYGQKFDVVVINFLSQRNEADQRVLELLSEKFKLFDGVFGA 583


>gi|161789119|ref|YP_001595675.1| SNF2 family protein [Vibrio sp. 0908]
 gi|161761405|gb|ABX77050.1| SNF2 family protein [Vibrio sp. 0908]
          Length = 2349

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 5/152 (3%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + K         + +    I+      D  ++           K       +N G I ++
Sbjct: 1652 NGKQIVFTEEKTQHHKLKRIIVNQLGVDEKQIGIINGSDAAGAKLQRIADSYNAGDIKIV 1711

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              +      G+NLQ G + +   +L W     QQ   R      RQ      V +YY + 
Sbjct: 1712 ICN-KKAEVGVNLQKGTSAIHHLTLPWTPASIQQRNGR----GVRQGNTASKVSLYYYLG 1766

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            + + D   L  L  K +    L N  + E ++
Sbjct: 1767 KGSFDGYRLDLLNKKKSWMRDLFNGTESEAVN 1798


>gi|331004417|ref|ZP_08327889.1| hypothetical protein HMPREF0491_02751 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411055|gb|EGG90475.1| hypothetical protein HMPREF0491_02751 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 903

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                R  +         +      +  +G+I +L       G G N Q     +    +
Sbjct: 315 MRIPEREIEFIHNSNNNREKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDV 374

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W   +  Q   RI      Q    + V+++  + +NT D  + Q L  K      ++ +
Sbjct: 375 PWRPADLSQRAGRIVR----QGNENKDVYIFRYVTENTFDAYLFQTLENKQKYISQIMTS 430


>gi|308271075|emb|CBX27685.1| hypothetical protein N47_H25070 [uncultured Desulfobacterium sp.]
          Length = 980

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ + +     +     +   G+NLQ+  ++++ + L W+ +  +Q I R      
Sbjct: 508 RTSLIEHFRDEGS--ILLATEAAAEGINLQF-CSLVINYDLPWNPQRIEQRIGRC----- 559

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V   + + N +D  VL+ L  K ++   +  A
Sbjct: 560 HRYGQRHDVVVINFLNERNEVDRRVLELLGEKFSLFSGVFGA 601


>gi|225017370|ref|ZP_03706562.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
 gi|224949780|gb|EEG30989.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
          Length = 2434

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +  +     +   +GK+ +L    +  G G+N+Q     +      W   +  Q
Sbjct: 2059 FVHDATSEAQRQELFERTRQGKVRILIGSTSKLGTGVNVQNKVISIDHLDCPWKPSDITQ 2118

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               R      RQ      + +   +A+ T D  + Q    K      +L
Sbjct: 2119 RNGR----GVRQGNENPEIMIKQFVAKGTFDAYLWQIQEQKLRYITQIL 2163


>gi|291392203|ref|XP_002712511.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 [Oryctolagus cuniculus]
          Length = 954

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   ++ A     +   +Q     G T         Q++    +  +      
Sbjct: 726 EKFLVFAHHKVVLDAITKELERKHVQHIRIDGSTSSADRDALCQQFQLSERHTVAVLSIT 785

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D
Sbjct: 786 AANMGLTF-SSADLVVFAELFWNPGVLI-----QAEDRVHRIGQTNSVGIHYLVAKGTAD 839

Query: 178 ELVLQRLRTKSTI 190
           + +   ++ K  +
Sbjct: 840 DYLWPLIQEKIKV 852


>gi|309791645|ref|ZP_07686137.1| helicase [Oscillochloris trichoides DG6]
 gi|308226267|gb|EFO80003.1| helicase [Oscillochloris trichoides DG6]
          Length = 1041

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 23/156 (14%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCTIQEWNEGK-- 108
             +       ++V   F   L  L +         +                 +   +  
Sbjct: 528 ETLAGEGPGKLLVFSFFIHTLNYLLQRLRTAGVRVELITGRVADEDREHLRDRFRLPRSH 587

Query: 109 ---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA- 164
              I +L +    C          + LV + + W+    +Q I RI      + G K   
Sbjct: 588 SKAIDVLLSSEVGCEGLDY--EFCDRLVNYDIPWNPMRIEQRIGRID-----RFGQKSPK 640

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V ++  +  +T++E V  R   +  I    L  L+ 
Sbjct: 641 VKIFNFVTPDTVEERVFFRCFERLDIFRHTLGDLEA 676


>gi|53729198|ref|ZP_00348337.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208183|ref|YP_001053408.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae L20]
 gi|126096975|gb|ABN73803.1| hypothetical ATP-dependent helicase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 956

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 494 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 547

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + +  + D+ VL+ L  K  +   +L A
Sbjct: 548 --HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 589


>gi|313895657|ref|ZP_07829213.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975783|gb|EFR41242.1| SNF2 family N-terminal domain protein [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 403

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K Y   +RE Y +L    +   N  +K ++  QL  G +  D++     +   K+ AL 
Sbjct: 272 VKVYKNLERESYAELACGEVSTVNVLTKLLRLSQLTGGFI-TDDDGSAHPISTAKLDALS 330

Query: 61  VIIE--KANAAPIIVAYHFNSDLA 82
            II+   ++   +++   F ++L 
Sbjct: 331 DIIDTVMSDGKKLVIMARFVAELD 354


>gi|23503224|gb|AAC43199.2| similar to Swiss-Prot Accession Number P32333, yeast helicase
           protein [Mycoplasma genitalium]
          Length = 72

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +E     R  + G  + V VY +IA+NTI+E V Q    K  +    L
Sbjct: 5   VENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTL 52


>gi|291240565|ref|XP_002740192.1| PREDICTED: Chromodomain-helicase-DNA-binding protein 1-like
           [Saccoglossus kowalevskii]
          Length = 938

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 28/179 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV------HDEK 55
           K Y    +       G         +  ++  +L N       E +             K
Sbjct: 768 KNYKALSK-------GLKGNLSGFLNIMMELKKLCNHPYLIRPEDNGITDLENLIRTSGK 820

Query: 56  IKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCTIQE 103
           +  L+ ++ + +     +++       L  L           +              +  
Sbjct: 821 VHLLDKLLTRLHETGHRVLIFSQMVRMLDILADYLSMKHWPFQRLDGSISSEVRKQALDH 880

Query: 104 WNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +N              + G G+NL    + ++ F   W+ +   Q   R     QR   
Sbjct: 881 FNAEGSMDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQNDLQAQARAHRIGQRNQN 938


>gi|89885781|ref|YP_515979.1| helicase-like [Rhodoferax ferrireducens T118]
 gi|89347779|gb|ABD71981.1| helicase-like [Rhodoferax ferrireducens T118]
          Length = 1726

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 82   ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    + +T         +   G I +L    + CG G N+Q     +   +  W  
Sbjct: 1322 HHEIAFIHEAQTHHAKSALFAKVRAGTIRVLIGSTSKCGMGTNVQTRLYAVHHLTTPWRP 1381

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + QQ   RI      Q     A+ ++  +   T D  + Q L  K+     +L+ 
Sbjct: 1382 SDLQQRDGRIER----QGNTCEAIEIWRYVTSGTFDAYMWQTLTAKAGFIAQVLSG 1433


>gi|86609161|ref|YP_477923.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557703|gb|ABD02660.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 964

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 35/198 (17%)

Query: 15  LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPII 72
           L   +     + ++  K LQ   G             HD K+     +++K        I
Sbjct: 440 LPDSDRRRLQALARLAKQLQ---GP-----------EHDTKLARAIELVKKLLQEGFHPI 485

Query: 73  VAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           +   + +                            ++    I      +  +L A     
Sbjct: 486 LWCRYVATAEYLDSYLRQQLGSPAQVACVTGRMGDEEREAKIANLEVDRPRVLVAT-DCL 544

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDE 178
             G+NLQ     ++ + L W+    +Q   R+    Q+ +     V V     ++  +D 
Sbjct: 545 SEGINLQEKFTAVIHYDLPWNPNRLEQREGRVDRYGQKASR----VKVIRFFGRDNPVDG 600

Query: 179 LVLQRLRTKSTIQDLLLN 196
           +VL+ L  K+      L 
Sbjct: 601 VVLEVLLNKAREIHRTLG 618


>gi|313224277|emb|CBY20066.1| unnamed protein product [Oikopleura dioica]
          Length = 817

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           R+ D+     Q  N   I        +   G+ L    + +VF  L +            
Sbjct: 527 RSDDRTTYVEQFQNNENIKCALLSITAVNMGVTLTK-ASTVVFAELHYTPGVMV-----Q 580

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              R  + G +  V + YLIA+NT DE + +
Sbjct: 581 AEDRAHRIGRETDVNIEYLIAKNTADEWIWR 611


>gi|256845761|ref|ZP_05551219.1| helicase [Fusobacterium sp. 3_1_36A2]
 gi|256719320|gb|EEU32875.1| helicase [Fusobacterium sp. 3_1_36A2]
          Length = 2122

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 1762 FIHDANDEKQKDEMFTKVRSGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQ 1821

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V VY  + +NT D  + Q +  K      ++ +
Sbjct: 1822 RAGRIVR----QGNENKNVEVYRYVTENTFDAYLWQTIENKQKFISQIMTS 1868


>gi|323449667|gb|EGB05553.1| hypothetical protein AURANDRAFT_17570 [Aureococcus anophagefferens]
          Length = 76

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +    +      S G GLNL    N+L       D        E   V R  + G  R V
Sbjct: 1   DPLTSVCLLTVRSAGVGLNLTN-ANVLCLCEPALDAA-----PEEQAVMRVHRIGQTRPV 54

Query: 166 FVYYLIAQNTIDELVLQRLRTK 187
            V    A  T+D  VL R   +
Sbjct: 55  TVLKFFAAGTVDARVLARRERR 76


>gi|303250388|ref|ZP_07336586.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252258|ref|ZP_07534155.1| hypothetical protein appser6_7760 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650714|gb|EFL80872.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860180|gb|EFM92196.1| hypothetical protein appser6_7760 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + +  + D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 590


>gi|189036176|gb|ACD75438.1| AMDV4_9 [uncultured virus]
          Length = 542

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           E  I        +V   +         A       +++    +  N+    +      + 
Sbjct: 404 EDKIVVFAHHHDVVDAIYEKFKDISVVATGNESLNERNDAVNKFQNDPSCKIFIGSIQAM 463

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G+ L    + ++F  + W   +           R  + G K  V V YL+  ++ID  
Sbjct: 464 GVGITLTA-SSTVIFTEIEWRPGDLT-----QAEDRLHRIGQKSTVLVQYLVVNDSIDSY 517

Query: 180 VLQ 182
           ++ 
Sbjct: 518 MID 520


>gi|322493527|emb|CBZ28815.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1232

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGN 130
           +V Y  +   A        G +  +   +++ +  +           + G G+NLQ   +
Sbjct: 772 LVDYLHSRGWANHAVVLTGGSSEAERLTSVRRFREDPACLFFLLSIKAGGCGINLQA-AH 830

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           ++V     +         E   + R  + G +  V   YL   +  ++ V QR   K+  
Sbjct: 831 MVVLVDRDYTATN-----EDQALARVYRIGQRYTVRAVYLATTDASEQRVAQRAAAKNKP 885

Query: 191 QDLLLNA 197
           +  ++N 
Sbjct: 886 RQAIIND 892


>gi|303252378|ref|ZP_07338544.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247677|ref|ZP_07529718.1| hypothetical protein appser2_6710 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648837|gb|EFL79027.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855845|gb|EFM88007.1| hypothetical protein appser2_6710 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + +  + D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 590


>gi|307245561|ref|ZP_07527648.1| hypothetical protein appser1_7650 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254516|ref|ZP_07536352.1| hypothetical protein appser9_7640 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258973|ref|ZP_07540704.1| hypothetical protein appser11_7700 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853620|gb|EFM85838.1| hypothetical protein appser1_7650 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862566|gb|EFM94524.1| hypothetical protein appser9_7640 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866997|gb|EFM98854.1| hypothetical protein appser11_7700 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQNTI-DELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + +  + D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNVADQRVLELLTEKFKLFQGVLGA 590


>gi|328848699|gb|EGF97901.1| hypothetical protein MELLADRAFT_84173 [Melampsora larici-populina
           98AG31]
          Length = 206

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +    ++     +  N   I        + G GLN+    + +      W+ +  QQ 
Sbjct: 83  HGEMTPQERILQLNRFQNNNNIEAFIVSIEAGGVGLNMT-CADEVYLMDAHWNSQIVQQA 141

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           I+R+      Q G    V VY+++A  ++++ +   
Sbjct: 142 IDRL-----HQIGQTHPVKVYHVVAGGSVEQHLFNV 172


>gi|296416157|ref|XP_002837747.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633630|emb|CAZ81938.1| unnamed protein product [Tuber melanosporum]
          Length = 2127

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 54   EKIKALEVIIEK--ANAAPIIVAYHFNSDLA---RLQKAFPQGRTLDK-----DPCTIQE 103
             K++ +  +I+K       I+V   F   +    ++ K +  G    K         +Q+
Sbjct: 1969 MKLEKMMHLIQKLIPVDEKILVFVQFTDLMEKVAQVLKEYKIGFLQIKGSAAAQSKALQQ 2028

Query: 104  WNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM-IERIGVTRQRQ 158
            + E      I +L  +              N  +F S      +++    E   + R R+
Sbjct: 2029 FQESAEKDNIKVLLLNVMDESASGANLTNANHAIFLSPLLTTTDYEYRSCETQAIGRVRR 2088

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQ 182
             G  + V V+  + +N+ID  + Q
Sbjct: 2089 YGQTKKVHVWRFLTENSIDVEIFQ 2112


>gi|224009261|ref|XP_002293589.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970989|gb|EED89325.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 83

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I ++  G++ +L     +   G NLQ     +V         EH   +E+  + R  +
Sbjct: 3   RAITDFTTGEVSILLLSAQAKASGANLQ-CATNVVLLDPAGSSAEHGATLEQQAIGRAVR 61

Query: 159 AGFKRAVFVYYLIAQNTIDE 178
            G + AV V   + +++I+E
Sbjct: 62  MGQENAVKVVRFLVKDSIEE 81


>gi|323948950|gb|EGB44844.1| hypothetical protein ERKG_04570 [Escherichia coli H252]
          Length = 2278

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 4    YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----------EVH 52
            Y      L   L  G+ I   +  ++  K  ++   A+   E++              + 
Sbjct: 1356 YAALIENLREGLKNGKQIVFIDEKAQHQKLRRIIASALQMPEQEIGIINATTVSQAGGIK 1415

Query: 53   DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             +K+          N          Y+          +      L+       ++NEG+ 
Sbjct: 1416 LKKVNKPTEPTPNKNGEYKEGAWETYYSKLAQYEDYLSAKNDAGLEGMEGIAADYNEGRT 1475

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++  +      G+NL  G   +   +L W      Q   R       Q      V V+Y
Sbjct: 1476 RIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGARVGSPQ----EKVNVHY 1530

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               + T D+  L  L+ K     +++ +   E 
Sbjct: 1531 YCGKGTFDDFRLDTLKRKKDWIKMVMTSDMSEI 1563


>gi|282900231|ref|ZP_06308184.1| Helicase-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194873|gb|EFA69817.1| Helicase-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 1019

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 19/180 (10%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
             + + E+        + ++  QLA   + + +      V + K+  L+ ++ +   +  
Sbjct: 521 LHEDEEEDSNFIADNGEILELTQLALELLSFSDANGQPGVENAKLDWLKGMLNRDPESKF 580

Query: 72  IVAY-------HFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-----GKIPLLFAHPASC 119
           ++              L           +L +   T+            I +L A  ++ 
Sbjct: 581 LIFTESLQTCEIIIKALPGYSGKLTGDMSLSQREDTVARLRGLGERGSNIRVLVAT-SAA 639

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
             G + Q   N ++ + L  +     Q   R+      + G    V  YYLI  +T +E 
Sbjct: 640 DEGFDFQT-ANRVIHWDLTPNPAVLMQRNGRVA-----RLGQISDVIAYYLIIADTHEEK 693


>gi|297259808|ref|XP_002808003.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
           protein 6-like [Macaca mulatta]
          Length = 2668

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               R  + G  +AV VY LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 934 QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 985


>gi|330844016|ref|XP_003293935.1| hypothetical protein DICPUDRAFT_99797 [Dictyostelium purpureum]
 gi|325075687|gb|EGC29545.1| hypothetical protein DICPUDRAFT_99797 [Dictyostelium purpureum]
          Length = 1247

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 20/151 (13%)

Query: 44   EEKHWKEVHDEKIKAL----EVIIEKANAAPIIVAYHFNSDLARLQK-----------AF 88
             ++  +E    K++ L    E +  K +    IV   FN  L  ++             +
Sbjct: 1000 HQQIQEEFKSCKLEYLIQRLEELDAKEDPIKTIVFTQFNETLYEIEWSLKFKTNLKYLVY 1059

Query: 89   PQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
               ++L +   TI  +       ++  +     +G+NL    N ++F             
Sbjct: 1060 NTHQSLRERSSTINSFQTNQDYKIIVMNVDLAAYGINLTA-ANHIIFVDPIP---IWNIS 1115

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
             ER  + R  + G  + V V  LI  N+I++
Sbjct: 1116 KERQAIKRAHRIGQTKPVTVEKLIINNSIEQ 1146


>gi|320530347|ref|ZP_08031412.1| protein, SNF2 family [Selenomonas artemidis F0399]
 gi|320137407|gb|EFW29324.1| protein, SNF2 family [Selenomonas artemidis F0399]
          Length = 1167

 Score = 53.2 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G   D      + +  + ++ +L A  A+   G+NLQ   +++V + L W+    +Q 
Sbjct: 532 HGGMLRDDRCKVEELFKQDKEVRILIATDAAG-EGINLQR-AHLMVNYDLPWNPNRLEQR 589

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+++ T + +V QRL  K   +   L+ 
Sbjct: 590 FGRI-----HRIGQTEVCHLWNLVSKETREGMVFQRLFDKLEQEREALHG 634


>gi|84997577|ref|XP_953510.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304506|emb|CAI76885.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 927

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 48/213 (22%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
           +  +++  +  S   K  QL             +       K +E I+E  N   I   +
Sbjct: 705 KDSDVKRAH-LSLMSKLFQLT-----------GESKTKGVCKYIEEILENNNKFIIFAHH 752

Query: 76  HFNSDLARL--------QKAFPQGRTLDKDPCTIQEWNEGK------------------- 108
            F  D                     ++     +  +                       
Sbjct: 753 MFMMDAIEDTLKSKKVGYIRIDGSTKINDRARLVNLFQNNSASNESKSDAKANKVEGDDS 812

Query: 109 ----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
               + +      SCG GLNL    + ++F  L+W      Q  +R+             
Sbjct: 813 PNNGVRVALLSLTSCGVGLNLTS-SSTVIFAELYWVPGVLLQAEDRVHRI----GTKFNK 867

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + + YLIAQN+++E++ + +  K       L+ 
Sbjct: 868 ININYLIAQNSVEEVMWKVINKKYKTVTSTLDG 900


>gi|322656978|gb|EFY53262.1| defense against restriction protein [Salmonella enterica subsp.
            enterica serovar Montevideo str. CASC_09SCPH15965]
          Length = 2278

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 4    YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----------EVH 52
            Y      L   L  G+ I   +  ++  K  ++   A+   E++              + 
Sbjct: 1356 YAALIENLREGLKNGKQIVFIDEKAQHQKLRRIIASALQMPEQEIGIINATTVSQAGGIK 1415

Query: 53   DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             +K+          N          Y+          +      L+       ++NEG+ 
Sbjct: 1416 LKKVNKPTEPTPNKNGEYKEGAWETYYSKLAQYEDYLSAKNDAGLEGMEGIAADYNEGRT 1475

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++  +      G+NL  G   +   +L W      Q   R       Q      V V+Y
Sbjct: 1476 RIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGARVGSPQ----EKVNVHY 1530

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               + T D+  L  L+ K     +++ +   E 
Sbjct: 1531 YCGKGTFDDFRLDTLKRKKDWIKMVMTSDMSEI 1563


>gi|307694006|ref|ZP_07636243.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 1320

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 937  FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 996

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 997  RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1043


>gi|289523749|ref|ZP_06440603.1| type III restriction enzyme, res subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503441|gb|EFD24605.1| type III restriction enzyme, res subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1137

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 21/195 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + ++        + +E     +K  +  ++             +    ++ +   +I  
Sbjct: 447 DEIEKLESLVAMAKEVEKKGVETKLNELKKV------------MESEKLQETETKLLIFT 494

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           ++      +     S    +           +        N+ +I +      + G G+N
Sbjct: 495 ESKDTLEYLVEKLKSWGYSVTYIHGGMNLDARIKAEADFKNQAQIMV---STEAGGEGIN 551

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           LQ+   ++V + + W+    +Q + R+      + G +  V +Y L+A +T +  +L RL
Sbjct: 552 LQF-CWLMVNYDIPWNPNRLEQRMGRV-----HRYGQRNEVHIYNLVAIDTREGQILSRL 605

Query: 185 RTKSTIQDLLLNALK 199
             K +     L + +
Sbjct: 606 FEKLSNIRSHLGSDR 620


>gi|291086755|ref|ZP_06571656.1| putative MutS domain I [Clostridium sp. M62/1]
 gi|291076845|gb|EFE14209.1| putative MutS domain I [Clostridium sp. M62/1]
          Length = 2973

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 13/179 (7%)

Query: 19   NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +I    +A       QL N  ++  E+    +  +      E I        +I      
Sbjct: 2531 DISTPQAAPPQKAAKQLDNPTLHALEDAIPLDKPEPAFTIYEDI-----RQKLIAQG--- 2582

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               A       +  T  +      +   G++ +L    +  G G N+Q     L      
Sbjct: 2583 -MPANQIAFIHEANTEVRKKELFAKVRTGQVRVLLGSTSKMGAGTNVQDRLVALHDLDCP 2641

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            W   +  Q   RI     +       V VY  + + T D  + Q +  K      ++ +
Sbjct: 2642 WRPGDLAQRKGRIERQGNKNPL----VHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2696


>gi|218133843|ref|ZP_03462647.1| hypothetical protein BACPEC_01732 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991218|gb|EEC57224.1| hypothetical protein BACPEC_01732 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1123

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +   ++  D +G  I A                   Y   K   +    ++   ++   
Sbjct: 682 QRMLNDMLPDFEGSKINA--------------CVDNIYRIWKENADKKSAQLVFCDLSTP 727

Query: 65  KANAAPIIVAYHFNSDLAR-----LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           K +    +        + R       K   +  T  K     Q+  +G++ +L       
Sbjct: 728 KNDGTFSVYNDIRKKLIERGIPESEVKFIHEADTDMKKKELFQKTRKGEVRVLLGSTQKM 787

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G N+Q     L      W   + +Q   RI      Q      V +Y  + + T D  
Sbjct: 788 GAGTNVQDKLIALHDVDCPWRPSDLEQRSGRIVR----QGNENPQVDIYRYVTEQTFDAY 843

Query: 180 VLQRLRTKSTIQDLLLNA 197
           + Q +  K      ++ +
Sbjct: 844 LYQLVEGKQKFASQIMTS 861


>gi|193698855|ref|XP_001947409.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
            pisum]
          Length = 1178

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNEGKIPL 111
              +I +     +++  +++  L  L +A  Q     +                +  KI  
Sbjct: 1023 IELITQDPNVKVLIFSNWDKALNLLGEALDQNSISYRILKPGTKYKKTLKDFKSNKKINA 1082

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L    +    GLNL      + F     +  +  Q I RI      + G  +  FV+  I
Sbjct: 1083 LLMKLSLGSKGLNLTE-ATRVFFMEPIINKADEHQAIGRI-----HRIGQTKPTFVHNFI 1136

Query: 172  AQNTIDELV 180
             +++I+E +
Sbjct: 1137 IRDSIEENI 1145


>gi|299067109|emb|CBJ38305.1| putative Helicase domain protein [Ralstonia solanacearum CMR15]
          Length = 461

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              L++    ++ ++EGK  ++   P+  GHGLN Q+    + F  +    E + Q + R
Sbjct: 325 SMDLEEKEDRLRAFSEGKARVIVTKPSIAGHGLNWQHAA-RMAFVGVTDSYEAYYQAVRR 383

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           I      + G KR   V+   ++   +  V+  L+ K      +  AL  ET
Sbjct: 384 IW-----RFGQKRDCHVHIFASK--AEGAVVANLKRKEREAAQMAEALSAET 428


>gi|189193863|ref|XP_001933270.1| ATP-dependent DNA helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978834|gb|EDU45460.1| ATP-dependent DNA helicase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1528

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 8/130 (6%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            + L  I +    A  I+   F   L  L+     +  G +   D   I+++   +     
Sbjct: 1260 RHLIWIRKNDPGAKSIIFSQFGDFLGVLRDALDKWKIGASSIADRNGIRKFKTDQSVECL 1319

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               A              +       +       IE   + R  + G +R   V+  +  
Sbjct: 1320 LLDAKTDSSGLTLVNATYVFLCEPLINPA-----IELQAINRVHRIGQQRPTTVFMYLIS 1374

Query: 174  NTIDELVLQR 183
            +T++E +   
Sbjct: 1375 DTVEEAIYDI 1384


>gi|167539868|ref|XP_001741391.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894093|gb|EDR22177.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 881

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 75  YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
           Y+      +  +   + ++ +K        ++    +      +   GL  Q    + +F
Sbjct: 670 YNLQRKKVQFIRIDGETKSENKKEFVDIFRDDDNCRVAVLSILAANCGLEFQKAA-LCIF 728

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + +   E  Q  +R+    Q       +V + YLIA  + DE +   +  K  +   +
Sbjct: 729 AEMTFVPGEMLQAEDRLHRIGQ----QADSVKIEYLIANKSYDEQIWNTIEKKLDVVGKV 784

Query: 195 LNALKKETIH 204
           L+   +E  H
Sbjct: 785 LDGKSRELDH 794


>gi|119952338|ref|YP_950158.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951468|gb|ABM10378.1| putative Helicase [Arthrobacter aurescens TC1]
          Length = 1884

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 88   FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   +             G I +L       G G N+Q     L      W   +  
Sbjct: 1472 RFMHEANNDRAKARLFEQARTGHIAVLIGSTEKMGVGTNVQRRAVALHHVDCPWRPADLA 1531

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            Q   RI      Q     +V VY  + +++ D  + Q +  K+   + L+
Sbjct: 1532 QRDGRIMR----QGNLNDSVRVYRYVTESSFDTYLWQTVERKAKFINQLM 1577


>gi|108756908|ref|YP_635362.1| SNF2 domain/helicase domain-containing protein [Myxococcus xanthus
           DK 1622]
 gi|108460788|gb|ABF85973.1| SNF2 domain/helicase domain protein [Myxococcus xanthus DK 1622]
          Length = 994

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                        +L   P + G GLN+    N ++ +  WW+  +     E     R  
Sbjct: 874 QNIDAFSRAKGFQVLILSPLAAGAGLNIVA-ANHVIHYGRWWNPAK-----EDQATDRAH 927

Query: 158 QAGFKRAVFVYY--LIAQN----TIDELVLQRLRTKSTIQDLLLNALKKET 202
           + G  R V VYY  L  Q       D  +   +  K  I    L+    +T
Sbjct: 928 RIGQVRPVHVYYPLLHRQGRPDMGFDLRLHDLVERKRAIARDFLSPTNDDT 978


>gi|307110374|gb|EFN58610.1| hypothetical protein CHLNCDRAFT_140806 [Chlorella variabilis]
          Length = 248

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + +  +L        +GLNL      +V      D       +E   V R  + G  RA
Sbjct: 88  QQRQPQVLLLLVKQGANGLNLTE-AQHVVLVEPQLDPA-----VEAQAVGRVDRIGQLRA 141

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             V+  + + T++E V +  + ++   DL   ++K
Sbjct: 142 THVHRFVVEKTVEENVHRLCQRRAAAMDLSAASVK 176


>gi|323179607|gb|EFZ65170.1| helicase conserved C-terminal domain protein [Escherichia coli 1180]
          Length = 2278

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 4    YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK----------EVH 52
            Y      L   L  G+ I   +  ++  K  ++   A+   E++              + 
Sbjct: 1356 YAALIENLREGLKNGKQIVFIDEKAQHQKLRRIIASALQMPEQEIGIINATTVSQAGGIK 1415

Query: 53   DEKIKALEVIIEKANAA---PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
             +K+          N          Y+          +      L+       ++NEG+ 
Sbjct: 1416 LKKVNKPTEPTPNKNGEYKEGAWETYYSKLAQYEDYLSAKNDAGLEGMEGIAADYNEGRT 1475

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++  +      G+NL  G   +   +L W      Q   R       Q      V V+Y
Sbjct: 1476 RIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGARVGSPQ----EKVNVHY 1530

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               + T D+  L  L+ K     +++ +   E 
Sbjct: 1531 YCGKGTFDDFRLDTLKRKKDWIKMVMTSDMSEI 1563


>gi|154279480|ref|XP_001540553.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412496|gb|EDN07883.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1296

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 51/191 (26%), Gaps = 64/191 (33%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN--AAPIIVAYHFNS 79
              + A    + LQ   G                K++ L+ ++ K        ++      
Sbjct: 983  RLSIAFPDKRLLQYDCG----------------KLQQLDKLLRKLQSGGHRALIFTQMTK 1026

Query: 80   DLARLQKAFPQGRTLD----------KDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYG 128
             L  L++                   +     + +N   +I        S          
Sbjct: 1027 MLDILEQFLNIHGHRYLRLDGATKVEQRQMLTERFNNDTRILAFILSSRS---------- 1076

Query: 129  GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                                      R  + G  R V +Y  I++ TI+  +L++   K 
Sbjct: 1077 -------------------------DRCHRIGQTRDVHIYRFISEYTIESNILRKANQKR 1111

Query: 189  TIQDLLLNALK 199
             + D+++   +
Sbjct: 1112 MLDDVIIQEGE 1122


>gi|220930539|ref|YP_002507448.1| helicase [Clostridium cellulolyticum H10]
 gi|220000867|gb|ACL77468.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 2077

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  +T  +          G+  ++       G G N+Q     L      W   + +
Sbjct: 1700 CIIHDAKTKKQKESMFSAMRTGEKRIILGSTPKMGTGTNIQNKLVALHHLDCPWRPADIE 1759

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   RI      Q      V ++  + ++T D  + Q +  K      ++ +
Sbjct: 1760 QRDGRILR----QGNENEKVEIFRYVTKDTFDGYLWQTVEQKQRFISQIMTS 1807


>gi|223985013|ref|ZP_03635111.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
 gi|223962985|gb|EEF67399.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
          Length = 2945

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 2562 FIHEANTEVRKKELFSKVRTGQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 2621

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 2622 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 2668


>gi|169852446|ref|XP_001832907.1| hypothetical protein CC1G_10583 [Coprinopsis cinerea okayama7#130]
 gi|116506042|gb|EAU88937.1| hypothetical protein CC1G_10583 [Coprinopsis cinerea okayama7#130]
          Length = 1280

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
               R  +   Q     ++   +      K  +          GLNL    + ++F     
Sbjct: 1077 IHVRFLRFTTQVSPQIREQLVLTFETSEKYRVFLMELKHGARGLNLVS-ASRVIFCEP-- 1133

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 Q  +E   + R  + G  R + V  L  + T +E ++ R
Sbjct: 1134 ---VWQADVESQAIKRVHRIGQTRPITVKTLAIKGTHEENMVAR 1174


>gi|307263345|ref|ZP_07544963.1| hypothetical protein appser13_7640 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306871407|gb|EFN03133.1| hypothetical protein appser13_7640 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DRRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNLADQRVLELLTEKFKLFQGVLGA 590


>gi|330892659|gb|EGH25320.1| SNF2-related:helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 64

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + VFVY +IA+ T++E + +  R KS +   +L+ 
Sbjct: 1   KPVFVYKMIARGTVEEKIQRLQREKSALASGVLDG 35


>gi|262113299|emb|CBH29315.1| superfamily II DNA/RNA helicase, SNF2 family [uncultured bacterium]
          Length = 129

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G+T ++     Q  N+ +I +      + G GLNL    + +     WW+       +E 
Sbjct: 21  GQTTNRSKVVEQFQNDDQIRVFLISLKAGGIGLNLTQ-ADYVYLIDPWWNPA-----VEN 74

Query: 151 IGVTRQRQAGFKRAVFVYYL 170
             + R  + G ++ V    L
Sbjct: 75  QAIDRVYRIGQQKNVVAVRL 94


>gi|258545975|ref|ZP_05706209.1| helicase/SNF2 domain protein [Cardiobacterium hominis ATCC 15826]
 gi|258518780|gb|EEV87639.1| helicase/SNF2 domain protein [Cardiobacterium hominis ATCC 15826]
          Length = 937

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I  +      ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 473 DKRAALIDRFRHDA-QIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 526

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G +  V V   + + N  D+ +L+ L  K  +   L  A
Sbjct: 527 --HRYGQESDVVVINFLNRRNEADKRILELLTEKFQLFSGLFGA 568


>gi|188591846|ref|YP_001796445.1| putative DNA/RNA helicase, SNF2 family [Cupriavidus taiwanensis]
 gi|170939241|emb|CAP64284.1| putative DNA/RNA helicase, SNF2 family [Cupriavidus taiwanensis LMG
           19424]
          Length = 948

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + +    ++ A   +   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 487 RAALVDYFRD-HATVMIAT-EAAAEGINLQF-CSMVVNYDLPWNPQRIEQRIGRC----- 538

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V   +  +N  D  V + L  K  +   +  A
Sbjct: 539 HRYGQRYDVVVVNFLNRKNEADRRVFELLSEKFRLFSGVFGA 580


>gi|225376799|ref|ZP_03754020.1| hypothetical protein ROSEINA2194_02441 [Roseburia inulinivorans DSM
           16841]
 gi|225211425|gb|EEG93779.1| hypothetical protein ROSEINA2194_02441 [Roseburia inulinivorans DSM
           16841]
          Length = 1077

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 694 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 753

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 754 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 800


>gi|121533618|ref|ZP_01665445.1| helicase domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307609|gb|EAX48524.1| helicase domain protein [Thermosinus carboxydivorans Nor1]
          Length = 1163

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G   ++     + +   K   +     + G G+NLQ   N+++ + L W+    +Q   R
Sbjct: 543 GMGREERKRVQELFTHDKHVHILIATDAAGEGINLQR-ANLMINYDLPWNPNRLEQRFGR 601

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I      + G      ++ ++A +T +  V  RL  K   +   L  
Sbjct: 602 I-----HRIGQTEVCHLWNMVAVDTREGEVYFRLLKKLEEEREALGG 643


>gi|317035065|ref|XP_003188905.1| hypothetical protein ANI_1_1382124 [Aspergillus niger CBS 513.88]
          Length = 282

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 50  EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCT 100
            +   K+  +  I+ +     +   I++   F   +  L        +P      K    
Sbjct: 74  HMPSAKLTKIREILTEWLAQDSPGKIVIFTQFLDFVQILATMCQAENWPYVLLTGKLSLA 133

Query: 101 IQEWN-------EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           ++E N       + +  ++ A   + G GL+L    N  +   LWW+     + I+    
Sbjct: 134 VRENNMTLFSDKDSEKRIMIASLKAGGTGLDL-SAANKCILVDLWWN-----EAIQEQAF 187

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            R  + G +  V    LI +N+ID+ +L     K+ I    +  
Sbjct: 188 CRLFRIGQESEVEFVKLIIENSIDDYLLNLQTHKTAIITGAMGE 231


>gi|319788873|ref|YP_004090188.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315450740|gb|ADU24302.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 2936

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                 ++  +G+   + A  +  G G N+Q     +    + W   +  Q   R      
Sbjct: 2550 RAEMFEQLRQGEKRFILASTSKLGTGANIQDRICAIHHLDIPWKPADLTQQDGR----GV 2605

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            RQ    + V +Y+ + +NT D  ++  +  K+   + ++ +  K+ + V
Sbjct: 2606 RQGNMFKEVGIYHYLTENTFDAYMMGIITNKAKFINQIMTS--KDPVRV 2652


>gi|302134007|ref|ZP_07259997.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 89

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G NL    N + F  L W               R  + G  R V V   +A++TID+
Sbjct: 3   AGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLAEDTIDQ 56

Query: 179 LVLQRLRTKSTIQDLLLN 196
            + Q L  K  +   L++
Sbjct: 57  QLWQMLMDKRALASDLID 74


>gi|324505946|gb|ADY42546.1| SMARCAL1-like protein [Ascaris suum]
          Length = 696

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R  +      +  ++        +  + +      + G G+ L     ++VF  L W+  
Sbjct: 551 RSIRIDGTTASKSREEQCRLFQEDDDVVVAILSMTAAGLGITLTA-ATVVVFAELHWNPG 609

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
                  +    R  + G   +VFV YL+A  T D+++   ++ K  +
Sbjct: 610 TL-----KQAEDRAHRVGQTDSVFVQYLLANRTADDVMWPLIQRKLDV 652


>gi|315045562|ref|XP_003172156.1| hypothetical protein MGYG_04745 [Arthroderma gypseum CBS 118893]
 gi|311342542|gb|EFR01745.1| hypothetical protein MGYG_04745 [Arthroderma gypseum CBS 118893]
          Length = 1517

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LL 112
            + L  + +    A  IV      F S L  +   F  G +   +   I+ + E       
Sbjct: 1246 RHLLWLRQHDPGAKSIVFSQNKSFLSTLRLVFYRFKIGHSSIDEQSGIERFKEDHTKECF 1305

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 1306 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 1359

Query: 173  QNTIDELVLQR 183
             NT++E + Q 
Sbjct: 1360 ANTVEETIYQI 1370


>gi|299144309|ref|ZP_07037389.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518794|gb|EFI42533.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 2878

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2326 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2385

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2386 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2432


>gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus equi
            subsp. equi 4047]
 gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi]
 gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi 4047]
          Length = 3975

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +      +  +G+I +L       G G N Q          + W   + +Q
Sbjct: 3394 FIHNAKNNKEKDKIFDKVRKGEIRVLLGSTQKMGAGTNAQNKLIATHDLDVPWRPADLEQ 3453

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  I +NT D  + Q L TK T    ++N+
Sbjct: 3454 RKGRIVR----QGNENDDVHIFRYITENTFDAYLFQTLETKQTYISQIMNS 3500


>gi|311274878|ref|XP_003134494.1| PREDICTED: hypothetical protein LOC100519806 [Sus scrofa]
          Length = 1369

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 24/169 (14%)

Query: 2    KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV-------H 52
            K Y     + +  L          N  +  ++  +  N     + +    +         
Sbjct: 1171 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGDPDAPDFQLQAMIQA 1230

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
              K+  ++ ++ K  A    +++       L  L+    Q R   +              
Sbjct: 1231 AGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAA 1290

Query: 101  IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            I  + +      +      + G G+NL    +  + F   W+ +   Q 
Sbjct: 1291 IDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQNDLQC 1338



 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEE-----HQQMIERIGVTRQRQAGFKRAVFV 167
            +   +      L     +  F   W             ++      R  + G  +AV V
Sbjct: 104 VSSAMTHNRTSQLLTPHAMQHFPVPWAAAIVSADMPCMVLLPAQAQARCHRIGQSKAVKV 163

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           Y LI +N+ +  +  +   K  +   +L  + ++ 
Sbjct: 164 YRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 198


>gi|307244223|ref|ZP_07526338.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492373|gb|EFM64411.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 2909

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2357 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2416

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2417 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2463


>gi|309799880|ref|ZP_07694085.1| helicase [Streptococcus infantis SK1302]
 gi|308116470|gb|EFO53941.1| helicase [Streptococcus infantis SK1302]
          Length = 869

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           + +   +       GR+++     +  + E    +L     +   GLNLQ+  N ++ + 
Sbjct: 455 YRAWQVKNFGKTNYGRSVEYKHAIVDYFKE-HSKVLIVT-DAGSEGLNLQF-CNTVINYD 511

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLL 195
           L W+ ++ +Q I R       + G K  V    L+   N  D  V + L  K  + D + 
Sbjct: 512 LPWNPQKIEQRIGRC-----HRYGQKYDVVAINLLNTGNEADRRVYEILSKKFELFDGIF 566

Query: 196 NA 197
            A
Sbjct: 567 GA 568


>gi|291541334|emb|CBL14445.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2753

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              +   +  T  +      +   G++ +L       G G N+Q     +      W   +
Sbjct: 2382 QVRFIHEATTDAQKKELFGKVRSGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSD 2441

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Q   RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 2442 LEQRQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2491


>gi|242051306|ref|XP_002463397.1| hypothetical protein SORBIDRAFT_02g043040 [Sorghum bicolor]
 gi|241926774|gb|EER99918.1| hypothetical protein SORBIDRAFT_02g043040 [Sorghum bicolor]
          Length = 1475

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N   + +L        +GLNL      ++      +        E   ++R  + G  ++
Sbjct: 1325 NMKPVQVLLMLIQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAISRIHRVGQDKS 1378

Query: 165  VFVYYLIAQNTIDELVLQR 183
             FV+  I + TI+E + + 
Sbjct: 1379 TFVHRFIVKKTIEESIYKL 1397


>gi|310792552|gb|EFQ28079.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
          Length = 1457

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 46/207 (22%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y  F  E    +    + + +  +K                           ++ +  +
Sbjct: 1214 IYSHFSSEKLAQINDVELGSLSFGTKVDTL-----------------------VRHVLWL 1250

Query: 63   IEKANAAPIIVAYHFNSDLARLQ---KAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPAS 118
             E    A  IV   + S L  L      +  G +    P  I  +  +  +     H  +
Sbjct: 1251 RESDPGAKSIVFTQYKSFLEILGAAFDRYKIGFSTIDRPNGITRFKEDPGVECFMLHGRA 1310

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GLNL    + +       +     Q I R+      + G K    V+  + + +++E
Sbjct: 1311 NSSGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RIGQKNETTVWLYLIEGSVEE 1364

Query: 179  LVLQRLRTKSTIQDLLLNALKKETIHV 205
             +                ++K+   H+
Sbjct: 1365 SIYNL-------------SVKRRMEHM 1378


>gi|295099158|emb|CBK88247.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2848

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++ +L       G G N+Q     L      W   +  Q
Sbjct: 2482 FIHDANTEARKKELFSKVRSGQVRILMGSTQKMGAGTNVQDRLIALHDLDCPWRPSDLAQ 2541

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             + R+      Q      V ++  + + T D  + Q +  K      ++ +
Sbjct: 2542 RLGRLVR----QGNQNPEVEIFRYVTEGTFDAYLYQLVENKQKFIAQIMTS 2588


>gi|225870148|ref|YP_002746095.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225699552|emb|CAW93149.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 2913

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2361 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2420

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2421 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|302676628|ref|XP_003027997.1| hypothetical protein SCHCODRAFT_78900 [Schizophyllum commune H4-8]
 gi|300101685|gb|EFI93094.1| hypothetical protein SCHCODRAFT_78900 [Schizophyllum commune H4-8]
          Length = 1442

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPC 99
             E  +       I+ L  I      A  IV   +   L      +++       +D+   
Sbjct: 1201 CEGDYGHKIQTLIRHLLYIQLGEEGAKSIVFSAWADSLYILQNAMKENDIPCLRIDQADA 1260

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +   +  I +L  H      GLN+    + +                E   + R  + 
Sbjct: 1261 ANKFRTDPNIQVLLLHGERENAGLNVT-CASRVFLLE-----SVVHHGFEIQAIARIDRM 1314

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            G +R   V+   A++T+++ +L     K
Sbjct: 1315 GQQRPTEVFCYYAEDTVEKNILDLAAKK 1342


>gi|225378233|ref|ZP_03755454.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
 gi|225209896|gb|EEG92250.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
          Length = 2481

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2101 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2160

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2161 REGRGIR----QGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 2207


>gi|224139696|ref|XP_002323232.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222867862|gb|EEF04993.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 803

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + R  Q G K  V +  LIA+N+I+E +L+    K    + 
Sbjct: 741 AINRVHQYGQKENVRIVRLIAKNSIEERILEMQERKKAANEA 782


>gi|330956047|gb|EGH56307.1| SNF2-related:helicase [Pseudomonas syringae Cit 7]
          Length = 90

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G NL    N + F  L W               R  + G  R V V   +A++TID+
Sbjct: 4   AGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRLVVVKIPLAEDTIDQ 57

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            + Q L  K  +   L++   +E
Sbjct: 58  QLWQMLMDKRALASDLIDPEAEE 80


>gi|229829842|ref|ZP_04455911.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
 gi|229791140|gb|EEP27254.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
          Length = 2869

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2375 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2434

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2435 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2481


>gi|158421592|ref|YP_001527819.1| helicase related protein [Deinococcus geothermalis DSM 11300]
 gi|158342835|gb|ABW35121.1| helicase related protein [Deinococcus geothermalis DSM 11300]
          Length = 1786

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 38   GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA---------- 87
             A             + K++ +  +         ++       +A L++           
Sbjct: 1555 HAAIGRVVNEHDPATNAKVQHVLNLAHARRGRGGVIFARNRRSIAMLKEQLEAQGHRVGV 1614

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                 T D      + ++ G + ++     +   G NLQ+ G  LV + L    +  +Q 
Sbjct: 1615 IDGSTTTDGKGKVRKAFDAGHVDIVLCS-DAGATGANLQHRGEWLVNYDLPLTQKTLEQR 1673

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
              RI      + G  + V +++L+     D   +QRL  K  +   +L    ++ 
Sbjct: 1674 NARID-----RLGQTKKVELHHLVTDTAYDRDNVQRLTRKREL-GSILQGEYRDM 1722


>gi|260438308|ref|ZP_05792124.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292809330|gb|EFF68535.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 2481

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 2101 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 2160

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 2161 REGRGIR----QGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 2207


>gi|67539206|ref|XP_663377.1| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4]
 gi|40743676|gb|EAA62866.1| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  + E    A  IV   +   L       ++      ++D+     +   +  I   
Sbjct: 2138 RHILWLREHDPGAQSIVFSQYKGFLDYLANAFRRFKIGYSSVDESDGIEKFKKDPGIECF 2197

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 2198 LLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLI 2251

Query: 173  QNTIDELVLQR 183
             +T+++ +   
Sbjct: 2252 SDTVEKSIYDI 2262


>gi|283769151|ref|ZP_06342055.1| N-6 DNA Methylase [Bulleidia extructa W1219]
 gi|283104127|gb|EFC05506.1| N-6 DNA Methylase [Bulleidia extructa W1219]
          Length = 2908

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2356 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2415

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2416 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2462


>gi|195015254|ref|XP_001984167.1| GH15153 [Drosophila grimshawi]
 gi|193897649|gb|EDV96515.1| GH15153 [Drosophila grimshawi]
          Length = 1285

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 50/168 (29%), Gaps = 22/168 (13%)

Query: 49   KEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP---CTI 101
                  KI  +  ++ K     +   +++   + + L  +  A        +       I
Sbjct: 1115 IGDFSTKIAYIVELVLKIKSGNDQEKVLIFSQWATILNYVAIALRHNGIEHRSKFTNRDI 1174

Query: 102  QEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
             E+ +  + +             L       +                E   + R  + G
Sbjct: 1175 DEFKDSALNVTCLLLPLARGAKGLNLIEATHVFLIEPILTPG-----EELQAIGRVHRFG 1229

Query: 161  FKRAVFVYYLIAQNTIDELVLQR---------LRTKSTIQDLLLNALK 199
              +   V+  I   TI+E +++          L +   + ++ L++L+
Sbjct: 1230 QTKPTTVHRFIVNGTIEENIMKLIKSADDKSTLSSHWDLDNMTLDSLR 1277


>gi|266619865|ref|ZP_06112800.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
 gi|288868574|gb|EFD00873.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM 13479]
          Length = 1389

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +     ++   G+I +L       G G+N+Q     L    + W   +  Q
Sbjct: 1022 FIHDYNTDIQRAELFEKVKTGEIRILIGSTEKMGAGMNVQDKLIALHHLDVPWRPADLTQ 1081

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               RI      Q      + ++  I + T D  + Q L  K      ++
Sbjct: 1082 RNGRILR----QGNENEEISIFNYITEQTFDAYLWQILEQKQKYISQIM 1126


>gi|323448154|gb|EGB04056.1| hypothetical protein AURANDRAFT_33115 [Aureococcus anophagefferens]
          Length = 114

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +LF              G N L+     W+      + +   + R ++ G  R  
Sbjct: 22  DSDLRVLFLSKRCTEGIT--CVGANHLIELGPSWNP-----VTDVQALGRIQRFGQTRPC 74

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            V  ++   +I+EL+L R   KS + +L+
Sbjct: 75  HVVRVVICGSIEELILLRQADKSGLVELV 103


>gi|237742424|ref|ZP_04572905.1| helicase [Fusobacterium sp. 4_1_13]
 gi|229430072|gb|EEO40284.1| helicase [Fusobacterium sp. 4_1_13]
          Length = 436

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 76  FIHDANNEKQKDEMFSKVRSGEIRVLIGSTQKMGAGTNVQTKLIALHDLDVPWRPADLEQ 135

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V VY  + +NT D  + Q +  K      ++ +
Sbjct: 136 RAGRIVR----QGNENKNVEVYRYVTENTFDAYLWQTIENKQKFISQIMTS 182


>gi|118575361|ref|YP_875104.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
 gi|118193882|gb|ABK76800.1| superfamily II DNA/RNA helicase, SNF2 family [Cenarchaeum symbiosum
           A]
          Length = 1016

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K    + I+    +   +       +          G    ++    +   + K  ++ A
Sbjct: 400 KDHPGKKILVFTESKDTLDYLMGKMEKWGYLANTIHGGMGLEERVEAERVFKNKTDVMVA 459

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             A+   G+NLQ+  ++++ + L W+    +Q + R+      + G +  V V+ LIA N
Sbjct: 460 TEAAG-EGINLQF-CHLMINYDLPWNPNRLEQRMGRV-----HRYGQQYPVTVFNLIASN 512

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKET 202
           T +  + ++L  +       L ++K++ 
Sbjct: 513 TREGEIFKKLFER-------LESIKRDV 533


>gi|147860973|emb|CAN82939.1| hypothetical protein VITISV_013126 [Vitis vinifera]
          Length = 2416

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +   A   G+T  + P    E+    + +L        +GLNL      +V     
Sbjct: 2251 HFRRQRTSAEGNGQTHAQQPEPEPEF----VQVLLLLIQHGANGLNLLE-AQHVVLVEPL 2305

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             +        E   ++R  + G +    V+  I ++T++E + + 
Sbjct: 2306 LNPAA-----EAQAISRVHRIGQENRTLVHRFIVKDTVEESIYKL 2345


>gi|78183618|ref|YP_376052.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78167912|gb|ABB25009.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 531

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 33/198 (16%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVA 74
           GE        +      Q+A                  K+ A E ++ +       +++ 
Sbjct: 345 GEVRSDAEPLAVLTAMRQIAAEF---------------KLSAAEQLLYQLHQQGHAVVLF 389

Query: 75  YHFNSDLARLQKA-----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             F + L  L +          +   +   ++  + +GK   L A   +   G  L    
Sbjct: 390 SAFVAPLQLLHQRIGGELMTGRQRPLERQQSVDRFQQGKSNCLLATYGTGSLGFTLHR-A 448

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             +V     W   + +Q  +R                 ++L      D+LV   L +K+ 
Sbjct: 449 RHVVLLERPWTPGDLEQAEDRCHRLGMGDGL-----TCHWLQL-GPADQLVDGLLASKAE 502

Query: 190 IQDLLL----NALKKETI 203
             ++LL     +L+++++
Sbjct: 503 RIEVLLGPRRQSLERQSL 520


>gi|50548151|ref|XP_501545.1| YALI0C07150p [Yarrowia lipolytica]
 gi|49647412|emb|CAG81848.1| YALI0C07150p [Yarrowia lipolytica]
          Length = 1756

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPL 111
            D  IK ++++  +A    I++   +   L  L  A  + +    +P T+  +    ++  
Sbjct: 1578 DHVIKYIKMLTHRAPGTQIVIFSQWAEILTLLASALTENKIAYAEPKTLMSFLQSEEVTC 1637

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
               +      GL L      ++      +        E   ++R  + G  +   V    
Sbjct: 1638 FLLNAKFQSTGLTLVN-ATHVILCEPILNAAL-----EAQAISRIHRMGQTQTTHVTIFT 1691

Query: 172  AQNTIDELVLQRLRTKS 188
              +T++E VL+    K 
Sbjct: 1692 MADTVEEEVLRLAINKR 1708


>gi|291166691|gb|EFE28737.1| superfamily II DNA and RNA helicase [Filifactor alocis ATCC 35896]
          Length = 2944

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2392 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2451

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2452 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2498


>gi|83956079|ref|ZP_00964561.1| hypothetical protein NAS141_02761 [Sulfitobacter sp. NAS-14.1]
 gi|83839645|gb|EAP78824.1| hypothetical protein NAS141_02761 [Sulfitobacter sp. NAS-14.1]
          Length = 972

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 23/151 (15%)

Query: 67  NAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKDPCTIQEWNEGKIP 110
           N   +IV   +   L  L+K                 F      ++       +N     
Sbjct: 426 NQRRVIVFSEYRDTLDWLRKQLLEELSLSPEDDRIAEFHGSTQPNERERIKARFNADPDQ 485

Query: 111 L---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
               +     +   G+NLQ+    L  F L W+    +Q   RI      +      +F 
Sbjct: 486 EPLRILLCTDAAREGINLQHRCYDLFHFDLPWNPSRLEQRNGRIDR----RLQPAPEIFC 541

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            Y   +N   + +LQ L  K+   +  L  +
Sbjct: 542 RYFTYKNRSSDRILQALFKKTERINSELGEV 572


>gi|158317173|ref|YP_001509681.1| helicase domain-containing protein [Frankia sp. EAN1pec]
 gi|158112578|gb|ABW14775.1| helicase domain protein [Frankia sp. EAN1pec]
          Length = 1046

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              G    +    + ++     P+ L         G+NL    + LV   + W L   +Q
Sbjct: 485 MHGGLPDVEQERIVDDFKTTASPVRLLITGDVASEGVNLHAQCHHLVHVDIPWSLIRIEQ 544

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQN---TIDELVLQRLRTKSTIQDLLLNA 197
              RI    Q+      A+    L+  +   + D  VLQRL  K  +    L  
Sbjct: 545 RNGRIDRYGQKHPPQIAALA---LVPSDDRFSGDVRVLQRLLAKEHLAHTTLGD 595


>gi|67539812|ref|XP_663680.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|40738861|gb|EAA58051.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|259479739|tpe|CBF70236.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_2G09120)
            [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  T  K    I+++ +   G   +L  +  +           N ++F S +    +
Sbjct: 2238 HIIITPTDQKTSSKIEKFQKEGFGDTKVLILNLGNEMAAGLNLQCANHVIFLSPFLAETQ 2297

Query: 144  H-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +    +    V R R+ G  R V +Y+L+A+ TID  V Q
Sbjct: 2298 YDYDSVMIQAVGRSRRYGQTRHVHIYHLLAKMTIDVNVFQ 2337


>gi|254516162|ref|ZP_05128222.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR5-3]
 gi|219675884|gb|EED32250.1| Type III restriction enzyme, res subunit family [gamma
           proteobacterium NOR5-3]
          Length = 961

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +DK    I  + +    +L A   +   G+NLQ+  ++++ + L W+ +  +Q I R
Sbjct: 489 SPAVDKRTALIDRFRDDA-EVLIAT-EAAAEGVNLQF-CSLVINYDLPWNPQRVEQRIGR 545

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
                  + G +  V V   + + N  D  VL+ L  K  + D L  A
Sbjct: 546 C-----HRYGQRFDVVVINFLNKRNDADRRVLELLSEKFHLFDGLFGA 588


>gi|299471940|emb|CBN79620.1| harp (smarcal1)-related [Ectocarpus siliculosus]
          Length = 1197

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                K    +  +     + ++     + G G+ L    +  VF  L+W      Q  +
Sbjct: 821 STAQKKRQPIVDRFQGSASVSVILLSITAAGVGITLTA-ASCAVFAELYWTPGSMAQAED 879

Query: 150 RIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           RI      + G K + V + YL+ + T+D+ V+  +  K T     + 
Sbjct: 880 RI-----HRIGQKAKTVLIRYLVGRGTMDDGVISTIHRKQTTLRSTVG 922


>gi|154500303|ref|ZP_02038341.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
 gi|150271035|gb|EDM98309.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
          Length = 1182

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 22/193 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +   +   +++   ++       T     LA   +   E     +   E +  +    +
Sbjct: 632 EQIWDDPDFEIEDSGMDDKEV---TGTLQSLAADILKLAEVLPEDDPKFEAMLRVIEEKQ 688

Query: 65  KANAAPIIVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQ--EWNEGKIPL-- 111
             +   +I+   F   LA L++             G   D+D   ++     +   P   
Sbjct: 689 AESNNKVIIFSSFKHTLAYLRRKLESQGLRVSQIDGSVRDEDRVLLRDRFKQDRDCPEAL 748

Query: 112 -LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +         GL+ Q+  ++++ + L W+    +Q I RI      +      V +Y +
Sbjct: 749 DILLFTEVGCEGLDYQF-CDMMINYDLPWNPMRIEQRIGRIDR----RGQKSEVVNIYNM 803

Query: 171 IAQNTIDELVLQR 183
           I   TID  +  R
Sbjct: 804 ITSGTIDADIYSR 816


>gi|301755790|ref|XP_002913754.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1-like
           [Ailuropoda melanoleuca]
          Length = 959

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLN 124
              +V      +L R      +     +        Q++   +   +      +   GL 
Sbjct: 738 HHKVVLSAITRELERKHVPHIRIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLT 797

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                +++VF  L+W+              R  + G   +V ++YL+A+ T D+ +   +
Sbjct: 798 F-SSADLVVFAELFWNPGVLL-----QAEDRVHRIGQASSVSIHYLVARGTADDYLWPLI 851

Query: 185 RTKSTI 190
           + K  +
Sbjct: 852 QEKIKV 857


>gi|281340244|gb|EFB15828.1| hypothetical protein PANDA_001570 [Ailuropoda melanoleuca]
          Length = 957

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ---GRTLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLN 124
              +V      +L R      +     +        Q++   +   +      +   GL 
Sbjct: 736 HHKVVLSAITRELERKHVPHIRIDGSTSSADREDLCQQFQLFEKHAVAVLSITAANMGLT 795

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                +++VF  L+W+              R  + G   +V ++YL+A+ T D+ +   +
Sbjct: 796 F-SSADLVVFAELFWNPGVLL-----QAEDRVHRIGQASSVSIHYLVARGTADDYLWPLI 849

Query: 185 RTKSTI 190
           + K  +
Sbjct: 850 QEKIKV 855


>gi|229829879|ref|ZP_04455948.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
 gi|229791177|gb|EEP27291.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
          Length = 2913

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2361 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2420

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2421 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|170109825|ref|XP_001886119.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639049|gb|EDR03323.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1192

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              ++   +         +          GLNL    + ++F          Q  +E   +
Sbjct: 999  QFREQLVLTFETSPTYRVFLMELKHGARGLNL-ISASRVIFCEP-----VWQADVESQAI 1052

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             R  + G  R + V  L  + T +E ++ R
Sbjct: 1053 KRAHRIGQTRPITVKTLAIRGTAEENMVAR 1082


>gi|115443362|ref|XP_001218488.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188357|gb|EAU30057.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 2106

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 87   AFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  T       ++++ +   G   +L     S           N ++F S    L +
Sbjct: 1966 HIAISATDRTSAQKVEQFQKTSFGDNKVLILTLGSEMAAGLNVQCANHVIFLSP--MLAQ 2023

Query: 144  HQQMIE---RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             Q   +      + R R+ G  + V +Y+L+A+ TID  + Q  R+K
Sbjct: 2024 TQYDYDSAMTQAIGRCRRYGQNKHVHIYHLLAKRTIDVNIFQERRSK 2070


>gi|323456692|gb|EGB12558.1| hypothetical protein AURANDRAFT_17580 [Aureococcus anophagefferens]
          Length = 68

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               +      +   G+NL    N  V      ++       +R  + R  + G +R V 
Sbjct: 1   PPTTIFLLSIRAGACGINLTQ-ANHCVMVEPCTNVAL-----DRQAIGRVHRMGQQRDVT 54

Query: 167 VYYLIAQNTIDELV 180
           ++ L+ +++++  +
Sbjct: 55  IHRLVLRDSVESRM 68


>gi|312127367|ref|YP_003992241.1| helicase domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777386|gb|ADQ06872.1| helicase domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 889

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +     +   +GKI L+     +   GLNLQ  G ++    L W+    +Q   RI
Sbjct: 730 YSKVERDEIKELVLDGKIKLMIGT-DAAAEGLNLQTLGALIN-VDLPWNPIRLEQRQGRI 787

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL----KKETIHV 205
               Q        V+VY L  +++I++ +   L  +  +   ++ +L    K E + +
Sbjct: 788 RRIGQ----QFDKVYVYNLRYKDSIEDRIHAVLSGRIKLTYDMIGSLPEIIKDEWMEI 841


>gi|195127015|ref|XP_002007964.1| GI12091 [Drosophila mojavensis]
 gi|193919573|gb|EDW18440.1| GI12091 [Drosophila mojavensis]
          Length = 1284

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 18/165 (10%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVII-------EKANAAPIIVAYHFNSDLARLQK 86
            QL                   KI  +  ++          N   I++   + + L  +  
Sbjct: 1095 QLYYSVRKGVNSSEVVGDFSTKITYIVDLVLKIKSESSDKNQEKILIFSQWPTILNHIAS 1154

Query: 87   AFPQGRTLDKDP---CTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            A  Q     +       I E+ +    +  L    A    GLNL      +         
Sbjct: 1155 ALSQNSIEYRSKFTNRDIDEFKDADRNVTCLLMPIARGSKGLNL-IEATHVFLVEPILTP 1213

Query: 142  EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                   E   + R  + G  +   V+  I   TI+E +++ +++
Sbjct: 1214 G-----EELQAIGRVHRFGQTKPTTVHRFIVNGTIEENIMKLIKS 1253


>gi|154278960|ref|XP_001540293.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412236|gb|EDN07623.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1538

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      L R    F  G +       ++ +  +  +   
Sbjct: 1165 RHLIWLRQHDPGAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVERFKTDPSVECF 1224

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G K+   V+  + 
Sbjct: 1225 LLHAKAHSSGLNL-INATHVFLCEPLINTA-----IELQAIARVHRIGQKQETTVWMYLV 1278

Query: 173  QNTIDELVLQR 183
             ++++E +   
Sbjct: 1279 SDSVEESIYDI 1289


>gi|300114480|ref|YP_003761055.1| SNF2-like protein [Nitrosococcus watsonii C-113]
 gi|299540417|gb|ADJ28734.1| SNF2-related protein [Nitrosococcus watsonii C-113]
          Length = 1145

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 69/226 (30%), Gaps = 42/226 (18%)

Query: 6   KFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEK 55
           +F+      ++  + ++  + +   K   ++                            K
Sbjct: 757 QFESYNTILMRASSSDSNAALAALQKLRDVSLHPRLVFGGGLDTPRPLADLVNLTDESGK 816

Query: 56  IKALEVIIEK--ANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTL 94
           I++L  I+++        I+                        S +    KA  +    
Sbjct: 817 IRSLLPILDQIRDRGEKCIIFVINKKLQAFLALTLAKIYLLPPVSVINGDAKAVAKRAAS 876

Query: 95  DKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                 I+ + E     ++   P + G GL    G N ++     W+  +     E    
Sbjct: 877 PTRQSMIRAFEERDGFNVIIMSPIAAGVGLT-VVGANNVIHLERHWNPAK-----EAQAT 930

Query: 154 TRQRQAGFKRAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
            R  + G KR V V+  +  +    + D  + Q L  K  ++D ++
Sbjct: 931 DRVYRIGQKRKVNVFIPLIHHPEYQSFDVNLHQLLSRKGQLKDAVV 976


>gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896]
          Length = 3918

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   +      +  +G++ +L      CG G N Q     +    + W   +  Q
Sbjct: 3336 FIHIAKNNKEKDAIFDKVRKGEVRVLLGSTGKCGAGTNCQDKLIAIHDLDIPWRPADLSQ 3395

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  I +NT D  + Q L  K      ++ +
Sbjct: 3396 RAGRIVR----QGNENSDVRIFRYITENTFDAYLFQTLENKQKYISQIMTS 3442


>gi|301115138|ref|XP_002905298.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110087|gb|EEY68139.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 855

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           +  ++ G I +L  +  +   G+NLQ   +++    + +   +    +E+  + R  + G
Sbjct: 629 VSSFHSGDIQVLILNSLTSASGINLQVASHLIFLDPVGYSPMQA-NTLEQQAIGRVLRMG 687

Query: 161 FKRA-VFVYYLIAQNTID----ELVLQRLRTKSTIQDLLLNALKKE 201
                V V  LIA++T++    + + +  +      D   +  +++
Sbjct: 688 QTNDLVTVVRLIAEDTVEATLYDDIHEATQKTIAADDSFFDGERED 733


>gi|224127900|ref|XP_002329205.1| hypothetical protein POPTRDRAFT_266879 [Populus trichocarpa]
 gi|222870986|gb|EEF08117.1| hypothetical protein POPTRDRAFT_266879 [Populus trichocarpa]
          Length = 166

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           Q+     I +L        +GLNL      +V      +        E   V+R  + G 
Sbjct: 23  QQQETKSIQVLLLLIQHGANGLNLLE-AQHVVLVEPLLNPAA-----EAQAVSRVHRIGQ 76

Query: 162 KRAVFVYYLIAQNTIDELVLQR 183
           ++   V+  I ++T++E + + 
Sbjct: 77  EQRTLVHRFIVKDTVEESIYKL 98


>gi|291563865|emb|CBL42681.1| hypothetical protein CK3_32610 [butyrate-producing bacterium SS3/4]
          Length = 416

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 12  FIHDANTELRKAELFAKVRSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQ 71

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V ++  + + T D    Q +  K      ++ +
Sbjct: 72  QEGRILR----QGNQNDKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 118


>gi|114583218|ref|XP_001152878.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 2 [Pan
           troglodytes]
          Length = 556

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   ++ A     +   +Q     G T   +     Q++    +  +      
Sbjct: 328 EKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSIT 387

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D
Sbjct: 388 AANMGLTF-SSADLVVFAELFWNPGVLI-----QAEDRVHRIGQTSSVGIHYLVAKGTAD 441

Query: 178 ELVLQRLRTKSTI 190
           + +   ++ K  +
Sbjct: 442 DYLWPLIQEKIKV 454


>gi|67591480|ref|XP_665565.1| DNA repair protein rhp16 [Cryptosporidium hominis TU502]
 gi|54656315|gb|EAL35335.1| DNA repair protein rhp16 [Cryptosporidium hominis]
          Length = 1236

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 21/148 (14%)

Query: 40   VYYDEEKHWKEVHDEKIKALEV----IIEKANAAPIIVAYHFNSDLARLQK--------- 86
                + K        KI  L      ++++   +  IV   F + L  +           
Sbjct: 1095 FITRQIKTQGFESSTKIDTLLEEVNKMMQEDPESKGIVFSQFTNMLDLVSYRLKKANIGC 1154

Query: 87   -AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   ++ +    +  +N+   + ++     + G GLNLQ   N +     WW+    
Sbjct: 1155 VMLAGSMSILQRNSILYSFNKFPDLKIILISLKAGGEGLNLQ-VANYVFLLDPWWNPAAE 1213

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                      R  + G K+ V     I 
Sbjct: 1214 L-----QAFQRAHRIGQKKKVTALRFIT 1236


>gi|145604058|ref|XP_360412.2| hypothetical protein MGG_11047 [Magnaporthe oryzae 70-15]
 gi|145012150|gb|EDJ96806.1| hypothetical protein MGG_11047 [Magnaporthe oryzae 70-15]
          Length = 873

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 28/99 (28%), Gaps = 14/99 (14%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    +         +L    ++   G         +      W+        E+  
Sbjct: 748 PKKRSNILLNFQTRQACTVLLITFSTGAVG---------VHILEPQWNPAA-----EKQA 793

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           + R  +    R V +     + +I++ V +R   K  + 
Sbjct: 794 IGRLLRLDQSRKVTIVRYAMEKSIEQAVQKRQLRKFQLA 832


>gi|320581003|gb|EFW95225.1| Putative helicase [Pichia angusta DL-1]
          Length = 1498

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 63/189 (33%), Gaps = 11/189 (5%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y      +  ++    ++    +   +   Q+         E   + +   +      
Sbjct: 1251 RLYQSLDPTMLKEISSIELKKNYGSKVDMIVRQII---YLKQMEPDVQILVYSQWTDFLK 1307

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
             + +A     I     +SD+   +    +GR+        +   + +I     +  +   
Sbjct: 1308 FLGRALRQNGISFLS-SSDVTHGEPNTKKGRSTFGSKEIDKFKRDPRITCFLLNAKAQAA 1366

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL L    + +       +L      +E   ++R  + G  +   V+  + +N+++E + 
Sbjct: 1367 GLTLTN-ASHVFLCEPLVNL-----PLELQAISRIHRIGQSQETKVWNFVIENSVEESI- 1419

Query: 182  QRLRTKSTI 190
              L TK  +
Sbjct: 1420 AILSTKKRM 1428


>gi|307261168|ref|ZP_07542844.1| hypothetical protein appser12_7310 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869150|gb|EFN00951.1| hypothetical protein appser12_7310 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNLADQRVLELLTEKFKLFQGVLGA 590


>gi|116071773|ref|ZP_01469041.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116065396|gb|EAU71154.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 538

 Score = 52.1 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 33/198 (16%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVA 74
           GE        +      Q+A                  K+ A E ++ +       +++ 
Sbjct: 352 GEVRSDAEPLAVLTAMRQIAAEF---------------KLSAAEQLLYQLHQQGHAVVLF 396

Query: 75  YHFNSDLARLQKA-----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             F + L  L +          +   +   ++  + +GK   L A   +   G  L    
Sbjct: 397 SAFIAPLQLLHQRIGGELMTGRQRPLERQQSVDRFQQGKSNCLLATYGTGSLGFTLHR-A 455

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             +V     W   + +Q  +R                 ++L      D+LV   L +K+ 
Sbjct: 456 RHVVLLERPWTPGDLEQAEDRCHRLGMGDGL-----TCHWLQL-GPADQLVDGLLASKAE 509

Query: 190 IQDLLL----NALKKETI 203
             ++LL     +L+++++
Sbjct: 510 RIEVLLGPRRQSLERQSL 527


>gi|330929262|ref|XP_003302572.1| hypothetical protein PTT_14447 [Pyrenophora teres f. teres 0-1]
 gi|311321978|gb|EFQ89337.1| hypothetical protein PTT_14447 [Pyrenophora teres f. teres 0-1]
          Length = 1529

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 8/130 (6%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWNEGKIPLLF 113
            + L  I +    A  ++   F   LA L+     +  G +   D   I+++   +     
Sbjct: 1259 RHLIWIRKNDPGAKSVIFSQFGDFLAVLRNALDKWKIGASSIADKDGIRKFKTDQSVECL 1318

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
               A              +       +       IE   + R  + G +R   V+  +  
Sbjct: 1319 LLDAKTDSSGLTLVNATYVFLCEPLINPA-----IELQAINRVHRIGQQRPTTVFMYLIS 1373

Query: 174  NTIDELVLQR 183
            +T++E +   
Sbjct: 1374 DTVEEAIYDI 1383


>gi|297827713|ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297327578|gb|EFH57998.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1635

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +K+     +  E  I +L        +GLNL      ++      +        E   V 
Sbjct: 1469 EKETQKTNQKEENPIQVLLLLVQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAVG 1522

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R  + G ++   V+  +   T++E + +  R K
Sbjct: 1523 RVHRIGQEKPTLVHRFLVTGTVEESIYKLNRNK 1555


>gi|167855922|ref|ZP_02478671.1| hypothetical ATP-dependent helicase [Haemophilus parasuis 29755]
 gi|167852959|gb|EDS24224.1| hypothetical ATP-dependent helicase [Haemophilus parasuis 29755]
          Length = 950

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           +ANG             H +  +  E  +   N A  I                      
Sbjct: 444 IANGYANQVVSFSGANHHTDAKRVYEQWLADENNAGRITGSPQVDM-------------- 489

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                 I  +      ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 490 --RTALIDHFKN-NAQIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 541

Query: 155 RQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   +  +N  D+ VL+ L  K  + D +  A
Sbjct: 542 --HRYGQKFDVVVINFLNQRNEADQRVLELLSEKFKLFDGVFGA 583


>gi|300779250|ref|ZP_07089108.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504760|gb|EFK35900.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
          Length = 1702

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  ++N GKI ++    A    G+NLQ     L   SL ++    +Q+  R      
Sbjct: 1400 RLKIQDDFNSGKIKIIIGSEAI-QEGMNLQENTTDLYMLSLPYNFTTLRQVEGRAWR--- 1455

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q      V + +++  ++ID  +LQ+L++K   Q   L A+KK
Sbjct: 1456 -QGNKFENVRINFMLTNDSIDVFMLQKLQSK---QARYLEAMKK 1495


>gi|222529584|ref|YP_002573466.1| helicase domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456431|gb|ACM60693.1| helicase domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 889

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +     +   +GKI L+     +   GLNLQ  G ++    L W+    +Q   RI
Sbjct: 730 YSKVERDEIKELVLDGKIKLMIGT-DAAAEGLNLQTLGALIN-VDLPWNPIRLEQRQGRI 787

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL----KKETIHV 205
               Q        V+VY L  +++I++ +   L  +  +   ++ +L    K E + +
Sbjct: 788 RRIGQ----QFDKVYVYNLRYKDSIEDRIHAVLSGRIKLTYDMIGSLPEIIKDEWMEI 841


>gi|190150014|ref|YP_001968539.1| ATP-dependent helicase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189915145|gb|ACE61397.1| hypothetical ATP-dependent helicase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 957

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNLADQRVLELLTEKFKLFQGVLGA 590


>gi|238925906|ref|YP_002939424.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
 gi|238877583|gb|ACR77290.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
          Length = 2560

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 2166 FIHDANTEAKKTELFGKVKSGQVRFLIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQ 2225

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + ++T D  + Q +  K      ++ +
Sbjct: 2226 REGRIIR----QGNHNKKVHIFRYVTESTFDSYMWQLIENKQKFISQIMTS 2272


>gi|46126071|ref|XP_387589.1| hypothetical protein FG07413.1 [Gibberella zeae PH-1]
          Length = 1422

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 10/149 (6%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCT 100
            +   +    D  +K L  + E    A  IV   +   L  L+     F  G     D   
Sbjct: 1203 DGPSFTTKVDTLVKHLMWLRESDPGAKSIVFSQYKGFLEILRNAFARFGIGHVSIDDSGG 1262

Query: 101  IQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            I+ +  +  +     H  +   GLNL    + +       +     Q I R+      + 
Sbjct: 1263 IRRFKEDASVECFLLHARAHSSGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RI 1316

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G      V+  +   T++E +      + 
Sbjct: 1317 GQTHETTVWLYLVSGTVEESIYNLSVQRR 1345


>gi|239827429|ref|YP_002950053.1| SNF2-related protein [Geobacillus sp. WCH70]
 gi|239807722|gb|ACS24787.1| SNF2-related protein [Geobacillus sp. WCH70]
          Length = 964

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + E K  ++ A   S   G+NLQ+  +++V + L W+ +  +Q I R      
Sbjct: 499 RAALVEHFRE-KAEIMIAT-ESAAEGVNLQF-CSLVVNYDLPWNPQRIEQRIGRC----- 550

Query: 157 RQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V   +  +N  D+ V + L  K  +   +L A
Sbjct: 551 HRYGQKHDVVVINFLNQRNEADQRVYELLEQKFNLFTGVLGA 592


>gi|323136362|ref|ZP_08071444.1| hypothetical protein Met49242DRAFT_0831 [Methylocystis sp. ATCC
           49242]
 gi|322398436|gb|EFY00956.1| hypothetical protein Met49242DRAFT_0831 [Methylocystis sp. ATCC
           49242]
          Length = 459

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE---EKHWKEVHDEKIKA 58
           + Y   + E   +L+   ++        ++C Q+     Y+ +        ++  E+   
Sbjct: 240 RLYDTLKDEAILELERFFVDGTLPGVAFIRCRQILEHPNYFPDLTMPGTTVDIIPERRPG 299

Query: 59  LEVII------EKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPCTIQ 102
              ++        AN  P++V                +     +      +  +     +
Sbjct: 300 KLELLDLHFENHAANKQPLVVFASLIPQERQILELSREHGLRFEILNGEVSHAESSQISK 359

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGG----NILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +  G +  L   P     G N Q+ G    +  ++ SL +      Q   R       +
Sbjct: 360 AFETGALDGLVCSPLVADAGFNWQFSGGKEVSHAIYASLDFRDTSFVQSYGRF-----LR 414

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              + A+ +  L  +N++D+ +   +  KS     +
Sbjct: 415 GKRESALRLTILKYRNSLDDRIAYLVNKKSRDAQKV 450


>gi|170027903|ref|XP_001841836.1| DNA repair protein RAD16 [Culex quinquefasciatus]
 gi|167868306|gb|EDS31689.1| DNA repair protein RAD16 [Culex quinquefasciatus]
          Length = 1276

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-----IQEWNEGK-- 108
            ++ +  +        II+  H++  L  L +A        +         I+E+ +    
Sbjct: 1112 VETVLKLKLDEPDVKIIIFSHWDPILFYLAQALDTNSVTYRLKSAKFYKHIEEFKDYTNG 1171

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I  L     +   GLNL      +       +  E         V R  + G  +  FV+
Sbjct: 1172 ITCLLLPLKAGSKGLNLTE-ATHVFLVEPILNPGEEL-----QAVGRVHRIGQTKPTFVH 1225

Query: 169  YLIAQNTIDELVLQRLR 185
              I QNTI+E + + ++
Sbjct: 1226 RFIVQNTIEETIHRTVQ 1242


>gi|255088523|ref|XP_002506184.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226521455|gb|ACO67442.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1741

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
               +  ++    +L  H  S   GL L    +++V    +    +     E     R  +
Sbjct: 1567 AIARFRDDPATQVLLLHAGSAAAGLTLTQ-ADLVVLLEPFLSPGD-----EAQAANRVHR 1620

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQ 182
             G  R V       + T++E +L 
Sbjct: 1621 IGQTRPVRCVTYFVEGTVEERLLA 1644


>gi|281419823|ref|ZP_06250822.1| helicase [Prevotella copri DSM 18205]
 gi|281406123|gb|EFB36803.1| helicase [Prevotella copri DSM 18205]
          Length = 966

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           F    + +K    +  + + +  ++ A   +   G+NLQ+  +++V + L W+ +  +Q 
Sbjct: 490 FTPSLSANKRQAIVDYFRD-EAEIMIAT-EAASEGINLQF-CSLIVNYDLPWNPQRVEQR 546

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
           I R       + G K  V V+  I + N  D  V Q L  K  + D +  +
Sbjct: 547 IGRC-----HRYGQKNDVVVFNFINKANAADVRVFQLLSEKFHLFDGVFGS 592


>gi|310824775|ref|YP_003957133.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397847|gb|ADO75306.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1010

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +     L +    +  + + + P +       G G N Q+  + LV + L W     +Q 
Sbjct: 539 YHGDLPLVERDRQVARFRDPEGPQVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQR 597

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKK 200
           I R+      + G  + V ++      T+   VL  L     +        D +L  ++ 
Sbjct: 598 IGRLD-----RIGQSKPVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVED 652

Query: 201 ETIHV 205
               +
Sbjct: 653 RLAEL 657


>gi|115377394|ref|ZP_01464599.1| type III restriction enzyme, res subunit family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365605|gb|EAU64635.1| type III restriction enzyme, res subunit family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1102

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +     L +    +  + + + P +       G G N Q+  + LV + L W     +Q 
Sbjct: 631 YHGDLPLVERDRQVARFRDPEGPQVLLCTEVGGEGRNFQF-AHHLVHYDLPWSPATVEQR 689

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ-------DLLLNALKK 200
           I R+      + G  + V ++      T+   VL  L     +        D +L  ++ 
Sbjct: 690 IGRLD-----RIGQSKPVEIHVFDPAGTLASDVLMLLADAVGVFGETVGGLDAVLEEVED 744

Query: 201 ETIHV 205
               +
Sbjct: 745 RLAEL 749


>gi|321264055|ref|XP_003196745.1| DNA repair protein rad8 [Cryptococcus gattii WM276]
 gi|317463222|gb|ADV24958.1| DNA repair protein rad8, putative [Cryptococcus gattii WM276]
          Length = 1919

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 97   DPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM-IERIG 152
               T+  +   N     +L           +     N  +F    +         +E   
Sbjct: 1745 RANTLDRFQSTNAATARVLLLKMNDASAAGSNLTTANHAIFLGPLFTNSLFNYRAVETQA 1804

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQR----LRTKST 189
            + R R+ G ++ V ++ L+A +TID  +       LR K+ 
Sbjct: 1805 IGRVRRYGQQKKVHIHRLLALDTIDMTIFNTRRAELREKTD 1845


>gi|323451563|gb|EGB07440.1| hypothetical protein AURANDRAFT_27712 [Aureococcus anophagefferens]
          Length = 205

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    + ++  G   +L A   S G GLN+      +VF   W++ + H+Q ++R    
Sbjct: 19  DERGAVLDDFRAGGADVLLATVHSGGTGLNITR-ATTVVFTDRWFNPQVHEQAVDRC--- 74

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
              + G  + V   +  A  TID+ +      K    
Sbjct: 75  --HRIGQTKPVAAAFYDAALTIDDCMRHVNDIKLDNA 109


>gi|257451832|ref|ZP_05617131.1| helicase [Fusobacterium sp. 3_1_5R]
 gi|317058387|ref|ZP_07922872.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684063|gb|EFS20898.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 2244

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 1864 FIHDANNEKQKEELFAKVRSGEIRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 1923

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  I + T D  + Q +  K      ++ +
Sbjct: 1924 RAGRIVR----QGNENEKVEVYRYITEGTFDAYLWQTIENKQKFISQIMTS 1970


>gi|76802571|ref|YP_327579.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
 gi|76558436|emb|CAI50027.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
          Length = 958

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +     +E+ +    +L A       G+NLQ+  N ++ + L W+    +Q  
Sbjct: 537 HGSLNEAQRKERFKEFEDSTRGVLIAT-DVISEGMNLQHAANQIIHYELPWNPNRLEQRN 595

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI--------------QDLL 194
            RI    Q+       V +  ++ ++ +D  +L++L  K+                 + +
Sbjct: 596 GRIDRYGQK----NDEVVIRTMVVEDQMDVAILEKLVQKANNIRQEYGFSPPYFGDDEGI 651

Query: 195 LNALKKETIH 204
           L  LK E I 
Sbjct: 652 LELLKDEGID 661


>gi|307256725|ref|ZP_07538504.1| hypothetical protein appser10_7280 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864773|gb|EFM96677.1| hypothetical protein appser10_7280 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           DK    I+ + E K  ++ A   +   G+NLQ+  ++L+ + L W+ +  +Q I R    
Sbjct: 495 DKRSALIEHFKE-KAQIMIAT-EAASEGVNLQF-CSLLINYDLPWNPQRVEQRIGRC--- 548

Query: 155 RQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
              + G K  V V   + + N  D+ VL+ L  K  +   +L A
Sbjct: 549 --HRYGQKFDVVVINFLNKRNLADQRVLELLTEKFKLFQGVLGA 590


>gi|289621334|emb|CBI52117.1| unnamed protein product [Sordaria macrospora]
          Length = 1142

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++   N             L      + +G T  +    +  +  + +  ++    +   
Sbjct: 850 LVFYENDNVAYYLAEVLEVLGIQHLIYAKGITSARKNQYLATFTLKQQFRVMLMDISQAA 909

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GL++    + + F +   + +     +    + R R+    + V V  L+ + +IDE++
Sbjct: 910 YGLDM-KTASRIYFINPVLNPQ-----VGAQAIGRARRISQHKPVTVETLVLRGSIDEVI 963

Query: 181 LQRLRT 186
           ++R   
Sbjct: 964 VRRREE 969


>gi|331002100|ref|ZP_08325619.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330411194|gb|EGG90610.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2661

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2114 FIHEANSDKQKDELFSKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2173

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2174 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2220


>gi|299471834|emb|CBN77004.1| chromatin remodeling complex subunit [Ectocarpus siliculosus]
          Length = 1297

 Score = 52.1 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 97  DPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               + E+N   +  +L     + G GL+     + +VF  L            R    R
Sbjct: 92  RASRLSEFNTNERCRVLVVSITAGGQGLDFTA-ASNVVFVELPESPAWL-----RQAEDR 145

Query: 156 QRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTKSTIQDLLLNA-LKKETIHV 205
             +   +++V VY  ++   + D+     L  K T Q  ++N  L  E I V
Sbjct: 146 LHRRRQEKSVNVYLTVLPTGSHDDTRWLSLSEKLTTQTSVMNGTLYAENIDV 197


>gi|255719067|ref|XP_002555814.1| KLTH0G18150p [Lachancea thermotolerans]
 gi|238937198|emb|CAR25377.1| KLTH0G18150p [Lachancea thermotolerans]
          Length = 1554

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            L +            K    ++++     +  L  +      GL L      +       
Sbjct: 1383 LKQHSVLHCNTAGAGKFSKMVEKFKKNPDVTCLLLNVTRQATGLTLVN-ATHVFIMDPIM 1441

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            +  + Q       + R  + G  R   V+  + +NT+++ +++ 
Sbjct: 1442 NTSDEQ-----QAINRTHRIGQTRETHVWNFVVRNTVEQNIVRL 1480


>gi|222612948|gb|EEE51080.1| hypothetical protein OsJ_31779 [Oryza sativa Japonica Group]
          Length = 1417

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + G  + V+ Y L+A  T++E + +R  TK  +   +++         K+E +H+
Sbjct: 1182 RYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHL 1236


>gi|326472754|gb|EGD96763.1| SNF2 family helicase/ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1510

 Score = 51.7 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            + L  + +    A  IV      F   L+ +   F  G +   DP  I+ +  +      
Sbjct: 1239 RHLLWLRQHDPGAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECF 1298

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 1299 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 1352

Query: 173  QNTIDELVLQR 183
             NT++E + Q 
Sbjct: 1353 ANTVEESIYQI 1363


>gi|331004670|ref|ZP_08328131.1| hypothetical protein HMPREF0491_02993 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409495|gb|EGG88937.1| hypothetical protein HMPREF0491_02993 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 909

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R  +         +      +  +G+I +L       G G N Q     +    + W   
Sbjct: 326 REIEFIHNANNNSEKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPA 385

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  Q   RI      Q      V+++  + +NT D  + Q L  K      ++ +
Sbjct: 386 DLSQRAGRIVR----QGNENEDVYIFRYVTENTFDAYLFQTLENKQKYISQIMTS 436


>gi|291530112|emb|CBK95697.1| SNF2 family N-terminal domain [Eubacterium siraeum 70/3]
          Length = 1171

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G I +L       G G+N+Q     L    + W   +  Q
Sbjct: 829 FVHDAETETKRSLLFAKVRSGDIRILIGSTYKLGLGVNVQERLIALHHIDVPWRPADMTQ 888

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V++Y  I + + D    Q L TK      LL+ 
Sbjct: 889 REGRILR----QGNTNSKVYIYRYITEGSFDAYSWQLLETKQRFISELLSG 935


>gi|303280403|ref|XP_003059494.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226459330|gb|EEH56626.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1776

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L        +GLNL      ++      D        E   + R  + G  +   V+ 
Sbjct: 1670 RVLLMPLRRGANGLNLTE-AQHVILLEPVLDPGA-----EAQAMKRVDRIGQTKPTCVHR 1723

Query: 170  LIAQNTIDELVLQRLRTKST 189
             +   T++E V +  R +  
Sbjct: 1724 FLLSGTVEENVHELSRRRRE 1743


>gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga
            sputigena Capno]
 gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga
            sputigena Capno]
          Length = 2020

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            ++     +++N GKI ++    A    G+NLQ     +   +L ++    +Q   R+   
Sbjct: 1708 NQRLDIQEKFNAGKIKIVIGSEAI-QEGMNLQENTTDMYLLTLPYNFTSLRQTEGRMWR- 1765

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
               Q      V V Y++  ++ID  +LQ+L+ K   Q   + A+KK
Sbjct: 1766 ---QGNKWENVRVNYMLTNDSIDVFMLQKLQAK---QSRYMEAIKK 1805


>gi|156344365|ref|XP_001621159.1| hypothetical protein NEMVEDRAFT_v1g145813 [Nematostella vectensis]
 gi|156206838|gb|EDO29059.1| predicted protein [Nematostella vectensis]
          Length = 223

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 42/184 (22%)

Query: 22  AFNSASKTVKCLQLANGAVYYDEEKHWKEVH---------------------DEKIKALE 60
           + +S        +L N      E+   ++                         K++ L+
Sbjct: 46  STSSLGFITSLKKLCNHPELIYEKAQMEDEGFEGVREMFPQKFDLKNVQPELSGKMQVLD 105

Query: 61  VII---EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG 107
            I+   +  +   +++  ++   L   +K   Q            ++ K    +  +N+ 
Sbjct: 106 YILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDGSMSIKKRQKIVDRFNDP 165

Query: 108 K--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           K    +      + G GLNL  G N LV F   W+        +   + R  + G K+  
Sbjct: 166 KGGDFIFMLSSKAGGCGLNL-IGANRLVMFDPDWNPAN-----DDQAMARVWRDGQKKKA 219

Query: 166 FVYY 169
               
Sbjct: 220 SYRR 223


>gi|331231674|ref|XP_003328500.1| homeotic regulator [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307490|gb|EFP84081.1| homeotic regulator [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 53

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                +E   V R  + G  + V+V++ +  NTI+E ++     K  +  
Sbjct: 4   HWNPTVEAQAVDRLHRIGQTKKVWVFHFVTPNTIEEKIIHVQNKKKQLAQ 53


>gi|291535497|emb|CBL08609.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2587

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                +  T  +      +   G++ +LF      G G N+Q     +      W   + +
Sbjct: 2218 CFIHEATTDAQKKELFGKVRSGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLE 2277

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 2278 QRQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2325


>gi|303276775|ref|XP_003057681.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226460338|gb|EEH57632.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 509

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 46/193 (23%), Gaps = 49/193 (25%)

Query: 2   KQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           + Y +F +   +   L        ++ S      ++ +                      
Sbjct: 317 RLYQQFLKSGPVRAALNK----TGSALSAINVLKKICDHPALCCAITGASAADAAASSTF 372

Query: 53  ----------------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------ 82
                                   K   L  ++    +N    +V     + L       
Sbjct: 373 TRSPSKSPGGSKSADLGGDPSASGKAAFLMDMLRHLASNGHRTLVFSQSRAMLDVLEKAA 432

Query: 83  ----RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                           D+    ++ +  +  IPL        G GL L    + +V +  
Sbjct: 433 AAEGHKLVRIDGNVPADERHARVERFQSDASIPLALLTSQVGGLGLTLTA-ADRVVIYDP 491

Query: 138 WWDLEEHQQMIER 150
            W+     Q ++R
Sbjct: 492 SWNPASDSQSVDR 504


>gi|327304455|ref|XP_003236919.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
 gi|326459917|gb|EGD85370.1| SNF2 family helicase/ATPase [Trichophyton rubrum CBS 118892]
          Length = 1515

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            + L  + +    A  IV      F   L+ +   F  G +   DP  I+ +  +      
Sbjct: 1246 RHLLWLRQHDPGAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECF 1305

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 1306 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 1359

Query: 173  QNTIDELVLQR 183
             NT++E + Q 
Sbjct: 1360 ANTVEESIYQI 1370


>gi|323693253|ref|ZP_08107471.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
 gi|323502736|gb|EGB18580.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
          Length = 2971

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 2528 FIHNANTETRKAELFAKVRSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQ 2587

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + + T D    Q +  K      ++ +
Sbjct: 2588 QEGRILR----QGNMNDKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 2634


>gi|256544790|ref|ZP_05472162.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399679|gb|EEU13284.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 3649

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + +   +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 3091 FIHKAKNNMEKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQ 3150

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3151 RAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3197


>gi|154502921|ref|ZP_02039981.1| hypothetical protein RUMGNA_00741 [Ruminococcus gnavus ATCC 29149]
 gi|153796460|gb|EDN78880.1| hypothetical protein RUMGNA_00741 [Ruminococcus gnavus ATCC 29149]
          Length = 479

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 96  FIHEANTEVRKKELFSKVRTGQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 155

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V VY  + + T D  + Q +  K      ++ +
Sbjct: 156 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 202


>gi|326484972|gb|EGE08982.1| SNF2 family helicase/ATPase [Trichophyton equinum CBS 127.97]
          Length = 1517

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLL 112
            + L  + +    A  IV      F   L+ +   F  G +   DP  I+ +  +      
Sbjct: 1246 RHLLWLRQHDPGAKSIVFSQNKSFLVTLSHVFYWFKIGHSSIDDPSGIERFKEDHTTECF 1305

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 1306 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 1359

Query: 173  QNTIDELVLQR 183
             NT++E + Q 
Sbjct: 1360 ANTVEESIYQI 1370


>gi|218133897|ref|ZP_03462701.1| hypothetical protein BACPEC_01786 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991272|gb|EEC57278.1| hypothetical protein BACPEC_01786 [Bacteroides pectinophilus ATCC
           43243]
          Length = 743

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 307 FIHDANTELRKAELFAKVRSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQ 366

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V ++  + + T D    Q +  K      ++ +
Sbjct: 367 QEGRILR----QGNQNDKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 413


>gi|126326253|ref|XP_001370015.1| PREDICTED: similar to zinc finger, RAN-binding domain containing 3,
           [Monodelphis domestica]
          Length = 959

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                       +    + ++  +    +      + G GL        ++F  L+WD  
Sbjct: 115 RYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTA-ATHVIFAELYWDPG 173

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                  +    R  + G   +V ++YLIA  T+D L+   L  
Sbjct: 174 HI-----KQAEDRAHRIGQSSSVNIHYLIANGTLDSLMWGMLNR 212


>gi|326387304|ref|ZP_08208914.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208485|gb|EGD59292.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 874

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +   +  +L A   S   G+NLQ+  ++LV F L W+ +  +Q I R      
Sbjct: 400 KAAIVEAFKSDEKAILIAT-ESGAEGINLQF-CSLLVNFDLPWNPQRVEQRIGRC----- 452

Query: 157 RQAGFKRAVFVYYLI--AQNTIDELVLQRLRTKSTIQDLLLNA 197
            + G K  V V  ++     T ++ + + L  K  + + +  A
Sbjct: 453 HRYGQKIDVTVVNMLDLTNQT-EQRIHELLSEKFHLFEGVFGA 494


>gi|298241002|ref|ZP_06964809.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297554056|gb|EFH87920.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 949

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    I E       +L         G+NLQ   N ++ + L W+   H+Q   R+ 
Sbjct: 522 PPVERENRIAELGAHPQRVLVCT-DCLSEGINLQEHFNAVIHYDLSWNPTRHEQREGRVD 580

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              Q  A   R V  Y   + ++ID++VL  L  K  
Sbjct: 581 RFGQP-AKDVRVVTYYDG-SSDSIDQIVLDVLLRKHN 615


>gi|171920945|ref|ZP_02696009.2| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
            13 str. ATCC 33698]
 gi|171903181|gb|EDT49470.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
            13 str. ATCC 33698]
          Length = 1871

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +  +G+I +L       G G N+Q     +    + W   + +Q
Sbjct: 1317 FIHEANTDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQ 1376

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1377 RSGRIVR----QGNENKEVSIYRYVTENTFDSYLWQTIENKQKFISQIMTS 1423


>gi|159481869|ref|XP_001698997.1| SWI/SNF2 superfamily protein [Chlamydomonas reinhardtii]
 gi|158273260|gb|EDO99051.1| SWI/SNF2 superfamily protein [Chlamydomonas reinhardtii]
          Length = 531

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 41/172 (23%), Gaps = 10/172 (5%)

Query: 4   YHKFQRELYCDLQGENIE------AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           Y   + E    +              +     ++  Q+A+                 +  
Sbjct: 360 YDALELEARRIISHALATDELLDHYISVLEIILRLRQVADAGCLPRTAAPSAWTISPRTH 419

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFA 114
           A            + +                           ++ +     G   +  +
Sbjct: 420 ASLAANTCTANRMLNLVGRALEAEGISYVRLDGSTPAKARAERLRRFASREPGSPLVFLS 479

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
              + G G+NL    + +     WW+    +Q ++R+    Q +      V 
Sbjct: 480 SLKAGGVGMNLTA-ASAVHLMDPWWNPAVEEQAMDRVHRLGQTRDVENGPVV 530


>gi|328725886|ref|XP_003248657.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 185

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCTIQEWNEGKIPL 111
             +I +     +++  +++  L  L +A  Q     +                 +  I  
Sbjct: 36  MELISQDPNVKVLIFSNWDKALNLLGEALDQNSISYRILKTGTKYKKTLKDFKLKKNINA 95

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L    +    GLNL      + F     +  +     E   +    + G  +  FV+  I
Sbjct: 96  LLVKLSVGSKGLNLTE-ATRIFFMDPIINKAD-----EHQAIGTIHRLGQTKPTFVHNFI 149

Query: 172 AQNTIDELV 180
            +++I+E +
Sbjct: 150 IRDSIEENI 158


>gi|297736470|emb|CBI25341.3| unnamed protein product [Vitis vinifera]
          Length = 1717

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                +   A   G+T  + P    E+    + +L        +GLNL      +V     
Sbjct: 1552 HFRRQRTSAEGNGQTHAQQPEPEPEF----VQVLLLLIQHGANGLNLLE-AQHVVLVEPL 1606

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             +        E   ++R  + G +    V+  I ++T++E + + 
Sbjct: 1607 LNPAA-----EAQAISRVHRIGQENRTLVHRFIVKDTVEESIYKL 1646


>gi|114583216|ref|XP_001152818.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a-like 1 isoform 1 [Pan
           troglodytes]
          Length = 575

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   ++ A     +   +Q     G T   +     Q++    +  +      
Sbjct: 347 EKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSIT 406

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D
Sbjct: 407 AANMGLTF-SSADLVVFAELFWNPGVLI-----QAEDRVHRIGQTSSVGIHYLVAKGTAD 460

Query: 178 ELVLQRLRTKSTI 190
           + +   ++ K  +
Sbjct: 461 DYLWPLIQEKIKV 473


>gi|260948488|ref|XP_002618541.1| hypothetical protein CLUG_02000 [Clavispora lusitaniae ATCC 42720]
 gi|238848413|gb|EEQ37877.1| hypothetical protein CLUG_02000 [Clavispora lusitaniae ATCC 42720]
          Length = 980

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 96  KDPCTIQEWNEGKIP-----LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           +    + ++++  +       L        HGL +      + F S  W      + +E 
Sbjct: 768 QRANNLSDFDDHDVEKNGGITLIMDLRLAAHGLTI-ISATRVYFTSPVWS-----RSVEA 821

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             + R  + G K  VFV  L+ + T++E + +R +T +     +++ LK
Sbjct: 822 QAIKRAHRIGQKNEVFVETLVLKGTLEEEIYKRRQTDNAADSSVVDDLK 870


>gi|218134672|ref|ZP_03463476.1| hypothetical protein BACPEC_02575 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990057|gb|EEC56068.1| hypothetical protein BACPEC_02575 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1200

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 820 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 879

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 880 REGRGIR----QGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 926


>gi|46108188|ref|XP_381152.1| hypothetical protein FG00976.1 [Gibberella zeae PH-1]
          Length = 1107

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 16/178 (8%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
            +RE         + +    +   K           +++         K    E      
Sbjct: 804 MERERMLASDDPEMNSQT-LAGNTKL---------GNDQHPSIRARSTKDAKPEAEAILD 853

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR-TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
            A   +      S  +              +D   +  +    I    A           
Sbjct: 854 GALGPLEEARITSTASIKLSYLIDNILRYQEDEKILIFYENDNIAWYLAGMLEVAAFGLD 913

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
               + + F S   + +     +E   + R R+   K+AVFV  L+ +++I+E++L+R
Sbjct: 914 MREASRIFFISPVLNPQ-----VEAQAIGRARRISQKKAVFVETLVLKDSIEEVILER 966


>gi|113477685|ref|YP_723746.1| helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168733|gb|ABG53273.1| helicase-like [Trichodesmium erythraeum IMS101]
          Length = 1138

 Score = 51.7 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 19/186 (10%)

Query: 11  LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
           L  +L+   IE     SK VK  ++      + + K    +  E    L+ ++ K     
Sbjct: 462 LALELEKREIE-----SKLVKLKEIITSKGIFQDRKMKLLIFTEHKDTLDYLVGKLRGWK 516

Query: 71  IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           + V           +       T        +E+ E    +L A  A+   G+NLQ+   
Sbjct: 517 LSVTQIHGGMKIGDR------DTPQTRIYAEREFREDA-QILVATEAAG-EGINLQF-CW 567

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           + + + + W+    +Q + R       + G ++   ++  +A NT +  VL +L  +   
Sbjct: 568 LTINYDIPWNPVRLEQRMGR-----THRYGQEKDCLIFNFVATNTREGRVLWKLFERIYA 622

Query: 191 QDLLLN 196
            +  L+
Sbjct: 623 IEADLD 628


>gi|332075663|gb|EGI86131.1| helicase conserved C-terminal domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 784

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 232 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 291

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 292 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 338


>gi|299883434|ref|YP_003738986.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|300712780|ref|YP_003738592.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|299126464|gb|ADJ16801.1| helicase domain protein [Halalkalicoccus jeotgali B3]
 gi|299126860|gb|ADJ17195.1| helicase domain protein [Halalkalicoccus jeotgali B3]
          Length = 980

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 22/194 (11%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            +      ++  +  QL        +        +   + +E I+ +     I++   + 
Sbjct: 438 TLNRSQIDAELGRVKQL----WRQAKAIETDSKAELLREFVERILAEDPDEKILIFTEYT 493

Query: 79  SDLARLQKAFPQGRTLDK---------DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129
             L  L+        + +             ++++       L     +   GLNLQ+  
Sbjct: 494 DTLKYLRDTVFPEHDIAQVYGDLEQERRRREMEKFENEAN--LMLATDAAQEGLNLQF-A 550

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +I+V + L W+     Q + R+      + G  R V +  L   NT +  +L+ L  K+ 
Sbjct: 551 HIMVNYDLPWNPIRIDQRMGRL-----HRYGQDRTVEIRNLFFDNTRESDILELLLEKTD 605

Query: 190 IQDLLLNALKKETI 203
             +  L  ++ + +
Sbjct: 606 QIEADLG-MRSDVL 618


>gi|322411801|gb|EFY02709.1| SNF2 family protein [Streptococcus dysgalactiae subsp. dysgalactiae
            ATCC 27957]
          Length = 1826

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1730 FVHDANTDEKKNSLSRKVNSGEVRILIASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1789

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               R+      Q      V +Y+ I + + D
Sbjct: 1790 RNGRLIR----QGNMHNEVDIYHYITKGSFD 1816


>gi|218184670|gb|EEC67097.1| hypothetical protein OsI_33891 [Oryza sativa Indica Group]
          Length = 1143

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL-------KKETIHV 205
            + G  + V+ Y L+A  T++E + +R  TK  +   +++         K+E +H+
Sbjct: 1035 RYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHL 1089


>gi|313888375|ref|ZP_07822043.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845572|gb|EFR32965.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 3466

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + +   +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 2912 FIHKAKNNMEKDAIFDKVRKGEIRVLIGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQ 2971

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 2972 RAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3018


>gi|242243119|ref|ZP_04797564.1| phage helicase [Staphylococcus epidermidis W23144]
 gi|242233467|gb|EES35779.1| phage helicase [Staphylococcus epidermidis W23144]
          Length = 413

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K+Y +F RE    L+   + A  ++  T+    L                +  K+  L+ 
Sbjct: 232 KEYDEFIREGIVQLKDRKLIAETASVGTMNARLLC------------TAFNQNKLSMLKD 279

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           ++E      +I+ Y +N +   ++            ++ D      +   K  +      
Sbjct: 280 LLESTED-RLIIFYQYNLEKEAIENVVKELNKPISYINGDLVDKNAYENKKSSITLVQYQ 338

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           S   G NLQ   N ++FF L   +   +         R  + G +R  F YY++   T +
Sbjct: 339 SGSFGHNLQK-ANKIIFFGLPNRVSFFE-----QSRKRTHRIGQERPCFYYYMLTLGTYE 392

Query: 178 ELVLQRL 184
               Q L
Sbjct: 393 WKNYQTL 399


>gi|255547283|ref|XP_002514699.1| ATP binding protein, putative [Ricinus communis]
 gi|223546303|gb|EEF47805.1| ATP binding protein, putative [Ricinus communis]
          Length = 1229

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 11/135 (8%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-DPCTIQEWNEGK----IPL 111
              + +I  A+   ++           +      G TL +     ++ +        + +
Sbjct: 546 CISQKMIIFAHHHKVLDGVQELIFEKGIGFVRIDGNTLPRDRQSAVRSFQSSNEASIVKI 605

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GL+       +VF  L                 R  + G   AV +Y   
Sbjct: 606 AIIGVTAGGVGLDF-SSAQNVVFLELPQSSSLML-----QAEDRAHRRGQTNAVNIYIFC 659

Query: 172 AQNTIDELVLQRLRT 186
           A++T+DE   Q L  
Sbjct: 660 AKDTVDERHWQYLNK 674


>gi|256544992|ref|ZP_05472360.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
 gi|256399288|gb|EEU12897.1| SNF2 family prophage LambdaSa04, helicase [Anaerococcus vaginalis
          ATCC 51170]
          Length = 78

 Score = 51.7 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 1/75 (1%)

Query: 11 LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP 70
          +   ++ ++I+A NSA+ + K LQ+A+G+V YDE+K+   +HD KI ALE +IE AN  P
Sbjct: 1  MVVSIKEKDIDAVNSAALSNKLLQMASGSV-YDEDKNMIRIHDRKIDALENLIEGANGKP 59

Query: 71 IIVAYHFNSDLARLQ 85
          + +AY + SDL R++
Sbjct: 60 VPIAYWYKSDLKRIK 74


>gi|304439303|ref|ZP_07399219.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372222|gb|EFM25812.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 3645

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + +   +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 3091 FIHKAKNNMEKDAIFDKVRKGEIRVLIGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQ 3150

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3151 RAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3197


>gi|317481229|ref|ZP_07940300.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
 gi|316902562|gb|EFV24445.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
          Length = 1662

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T       I++ N G I +LF   +  G G+N Q     +    + W   + +
Sbjct: 1292 QFIQTAKTEKARKRMIEDMNNGTIRVLFGSTSMLGTGVNAQKRAVAVHHIDIPWRPADLE 1351

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V V     + T+D      L+ K    + +
Sbjct: 1352 QRNGRAVRKGNTVKLWGNNTVDVIIYGTEKTLDAYKFNLLKNKQMFINQI 1401


>gi|224010774|ref|XP_002294344.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969839|gb|EED88178.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1504

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 22/172 (12%)

Query: 22   AFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL 81
            A  +     K LQL N     +  ++  E+                    IV   F    
Sbjct: 1281 ASKAKYTIDKLLQLRN-----ESSRNVSELAVRMFSKSSTHSSSHRPLKAIVFSQFRPIY 1335

Query: 82   ARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                                 T  ++    +   + +  ++        HGL+L      
Sbjct: 1336 EYFGDRLIREFGGACVADFSFTKTRNEELKKFRLDPQCFIMLLS-KQGSHGLDL-SFCTH 1393

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            + F    +D    QQ++ R       + G    V+V  L A+++I+E++ + 
Sbjct: 1394 IFFLDTIYDKSLEQQVVAR-----AYRMGATGPVYVEQLTAKDSIEEVMNEM 1440


>gi|317033838|ref|XP_001395547.2| C-5 cytosine-specific DNA methylase [Aspergillus niger CBS 513.88]
          Length = 2044

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 22/172 (12%)

Query: 54   EKIKALEVIIEKAN-AAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE 103
             K+  L  I+         ++   +           DLA+++                Q 
Sbjct: 1862 SKLDKLIEILNGIPSNERALIFIQYPELIEVASKALDLAKIKHTAILTTDRKSMQKIEQF 1921

Query: 104  WNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI--ERIGVTRQRQA 159
                 G+   L  +              N ++F S   + E            + R R+ 
Sbjct: 1922 QQTSFGEDKALILNLGGEMAAGLNLQSANHVIFLS-PMNAETQYDYESAMIQAIGRSRRY 1980

Query: 160  GFKRAVFVYYLIAQNTID-----ELVLQRLRTKSTIQDLLL--NALKKETIH 204
            G  R V VY+L+A+++ID     E   Q L  ++   +L+    AL  E I 
Sbjct: 1981 GQTRRVHVYHLLAKHSIDVNIFQERRHQVLIERNGKAELVAHGEALDGEWIR 2032


>gi|315652657|ref|ZP_07905634.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485101|gb|EFU75506.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 833

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 254 FIHNANNNREKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLSQ 313

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V+++  + +NT D  + Q L  K      ++ +
Sbjct: 314 RAGRIVR----QGNENEDVYIFRYVTENTFDAYLFQTLENKQKYISQIMTS 360


>gi|226334820|ref|YP_002784492.1| hypothetical protein ROP_pKNR-00480 [Rhodococcus opacus B4]
 gi|226246040|dbj|BAH56140.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 2889

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G++ +L     + G G+N+Q     L      W   + +Q   RI      Q    + V 
Sbjct: 2323 GEVKVLIGSSETMGTGMNVQKRATALYHVDCPWRPADLEQREGRIIR----QGNQNKTVE 2378

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLL----LNALKKETI 203
            +  ++ + + D    Q +  KS   + L    ++  + E I
Sbjct: 2379 IINIVGERSYDTTKWQTVEKKSAYIEQLRRGAIDFSEAEDI 2419


>gi|7019996|dbj|BAA90955.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWN-EGKIPLLFAHPA 117
           E  +  A+   ++ A     +   +Q     G T   +     Q++    +  +      
Sbjct: 391 EKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSIT 450

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           +   GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D
Sbjct: 451 AANMGLTF-SSADLVVFAELFWNPGVLI-----QAEDRVHRIGQTSSVGIHYLVAKGTAD 504

Query: 178 ELVLQRLRTKSTI 190
           + +   ++ K  +
Sbjct: 505 DYLWPLIQEKIKV 517


>gi|240047625|ref|YP_002961013.1| hypothetical protein MCJ_005050 [Mycoplasma conjunctivae HRC/581]
 gi|239985197|emb|CAT05210.1| HYPOTHETICAL PROTEIN MCJ_005050 [Mycoplasma conjunctivae]
          Length = 400

 Score = 51.3 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 15/191 (7%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           +K+Y             E I   NS           +LA+G +   E +    V + KI 
Sbjct: 197 VKEYKYMVEAPQEYFAKEKITFNNSKLEMQDLTNLRKLASG-ILIGENRKATIVSNYKIN 255

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLFA 114
            ++ +I+        + Y+FN +L  ++++  + +  + +   ++           ++  
Sbjct: 256 YIKKLIQ--PKTNYCIFYNFNEELEMIKESLSKFKIFEINKTKVELQEALKYEDNFIIAI 313

Query: 115 HPASCGHGLN-LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                  G   L+      ++FS   + E+  Q   RI      + G K+ V  YY+  +
Sbjct: 314 QYKWGARGFKGLENKVFNQIYFSPSLNKEDFWQSYIRI-----YRPGQKQEVNFYYIAGK 368

Query: 174 NTIDELVLQRL 184
           N+I+  +   L
Sbjct: 369 NSIELAIYHHL 379


>gi|307104958|gb|EFN53209.1| hypothetical protein CHLNCDRAFT_137064 [Chlorella variabilis]
          Length = 2583

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                   T ++    +Q++  G+  +      +  HG+NL     I+V    W       
Sbjct: 1936 CKIEGSTTDNQRTQYVQDFEGGRYQVFLLS-KAGTHGINLVSCRRIVVLEEPWN------ 1988

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN--ALKK 200
             +     + R  + G     FVY +     +   V  R   K  +   +++  ++K+
Sbjct: 1989 PVYNLQAIARLFRYGQAHGTFVYRMYFNGAVQYNVYLRNVNKVMLFKRVIDRQSVKR 2045


>gi|240147471|ref|ZP_04746072.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
 gi|257200333|gb|EEU98617.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
          Length = 1446

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 1066 FIHDAKTDAQRDALFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQ 1125

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D      +  K      ++ +
Sbjct: 1126 REGRGIR----QGNKNDEVAIYRYVTKQTFDAYNWSLVENKQRFISQVMTS 1172


>gi|117924655|ref|YP_865272.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117608411|gb|ABK43866.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 954

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 22/201 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KEVHDEKIKALE 60
            + +++   DLQ E+I      ++  +  Q+        +            D K  A  
Sbjct: 393 RQLEKQENPDLQ-EDIGVLKVLAE--EVRQITPEHFTKYQRLVQAIRRDFGWDGKNTADR 449

Query: 61  VIIE-KANAAPIIVAYHFNSDLARLQKAF---PQGRTLDKDPCTIQEWNEGKIPL-LFAH 115
           +++  +       +A H   DL    K         +  +    ++ + + + P+ L   
Sbjct: 450 LVLFTERIETLKFLAEHLPRDLKLKDKQVEILHGSMSDVEQQQVVEAFGKDEEPVRLLIA 509

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-- 173
                 G+NL Y  + ++ F + W L   QQ   RI      + G ++   + YL     
Sbjct: 510 SDVASEGINLHYLCHRMIHFDIPWSLMVFQQRNGRID-----RYGQEQTPHIVYLTTNSQ 564

Query: 174 -NTI--DELVLQRLRTKSTIQ 191
            + I  D  +L+ L  K    
Sbjct: 565 NDKIRGDMRILELLIQKDEQA 585


>gi|159038639|ref|YP_001537892.1| helicase domain-containing protein [Salinispora arenicola CNS-205]
 gi|157917474|gb|ABV98901.1| helicase domain protein [Salinispora arenicola CNS-205]
          Length = 956

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 88  FPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
              G   D+    +  + +    I +L         G+NL    + L+ + + W L   +
Sbjct: 483 MHGGLPDDEQQQIVDAFKQEHAAIRVLV-TGDVASEGVNLHAQCHHLIHYDIPWSLIRIE 541

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT----IDELVLQRLRTKSTIQDLLLNAL 198
           Q   RI   RQRQ        +  L+  ++     D  +L +L  K       L  +
Sbjct: 542 QRNGRIDRYRQRQP----PRIIALLLDPDSGRFAGDIRILAKLVDKENEAHRALGDV 594


>gi|78190607|gb|ABB29625.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Priapulus caudatus]
          Length = 429

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 53/194 (27%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF-------NSASKTVKCLQLANGAVYYDEEKH------ 47
           ++ Y  F +        E + A        +         ++ N  +   +  H      
Sbjct: 236 VQLYEDFAKSRARVDAEEQMGASEAARPHSHVFQCLQYLRKVCNHPLLVLQPDHPLYRQI 295

Query: 48  -----------WKEVHDEKIKALEVIIEKAN--------------AAPIIVAYHFNSDLA 82
                          H  K+ AL  +++                     +V   F S L 
Sbjct: 296 ADQLDRTATSLCSLQHSGKLVALRQLLQDCGIGVGERAPAEAVVGEHRALVFCQFKSMLD 355

Query: 83  RLQKA----FPQGRTLDK---------DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYG 128
            ++K          T  +             +  + N+  I +L       G GLNL  G
Sbjct: 356 IVEKHLLKPHMPSLTYLRLDGSIPAGSRHSIVNRFNNDPSIDVLLLTTHVGGLGLNLT-G 414

Query: 129 GNILVFFSLWWDLE 142
            + ++F    W+  
Sbjct: 415 ADTVIFVEHDWNPM 428


>gi|85089833|ref|XP_958131.1| hypothetical protein NCU07358 [Neurospora crassa OR74A]
 gi|28919457|gb|EAA28895.1| predicted protein [Neurospora crassa OR74A]
          Length = 1085

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
           ++   N             L      + +G T ++    +  +  + KI ++    +   
Sbjct: 797 LVFYENDNVAYYLAEVLEVLGIQHLIYAKGITSERKNHHLATFTLKPKIRVMLMDVSQAA 856

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +GL++    + + F +   + +     +    + R R+   ++ V V  L+ + +IDE++
Sbjct: 857 YGLDM-KTASRIYFINPVLNPQ-----VGAQAIGRARRISQQKPVTVETLVLRGSIDEVI 910

Query: 181 LQRLRT 186
           ++R   
Sbjct: 911 VRRREE 916


>gi|145225878|ref|YP_001136532.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145218341|gb|ABP47744.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 1594

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            + +   +  T            +G++ +L       G G N+Q   + L      W    
Sbjct: 1244 MIRFAHEATTPKAREALFAGCRDGRVAVLIGSTPKVGIGTNIQNRLHSLHHVDPTWTAAA 1303

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKE 201
             +Q   R      R       V +Y  + + T D  +   +  K+   + L  ++   +E
Sbjct: 1304 WEQRNGR----AVRNGNQHDVVDIYSYVTEGTFDAYMFGIVERKARGFEQLYRVDGQARE 1359

Query: 202  T 202
             
Sbjct: 1360 I 1360


>gi|116198109|ref|XP_001224866.1| hypothetical protein CHGG_07210 [Chaetomium globosum CBS 148.51]
 gi|88178489|gb|EAQ85957.1| hypothetical protein CHGG_07210 [Chaetomium globosum CBS 148.51]
          Length = 1480

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 10/149 (6%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPC 99
            +   +    D   + L  + +    A  IV   +   L       ++      + DK   
Sbjct: 1237 DGPSFTTKVDMLTRHLMWLRDFDPGAKSIVFSQYKEFLDVLALAFRRYRIGYTSFDKAHG 1296

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +    +   H  +   GLNL    N +       +     Q I R+      + 
Sbjct: 1297 IAIFKEDPGTEVFLLHARAHASGLNLVN-ANHVFLCEPLLNTALELQAIARVD-----RI 1350

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G +    V+  I   T++E +      + 
Sbjct: 1351 GQQHGTTVWLYIVDGTVEESIHDLSVQRR 1379


>gi|269839175|ref|YP_003323867.1| helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790905|gb|ACZ43045.1| helicase domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 1160

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G + +      +E+ +   + +L A  A+   G+NLQ   N+LV + L W+    +Q 
Sbjct: 535 HGGMSREDRMRCQEEFVHNPDVHVLVATDAAG-EGINLQR-ANLLVNYDLPWNPNRLEQR 592

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      + G      ++ L+A+ T +  V   L TK   Q   L  
Sbjct: 593 FGRI-----HRIGQTEVCHMWNLVAKGTREGEVYLTLLTKLDQQSKALGG 637


>gi|218200743|gb|EEC83170.1| hypothetical protein OsI_28396 [Oryza sativa Indica Group]
          Length = 848

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 98  PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + ++N      +LF    + G G++L  G + +V   +  +L        R  +   
Sbjct: 653 QLAMDQFNGSADAKVLFGSIKAFGEGISL-VGASRIVILDIHLNLSVT-----RQAIGST 706

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            + G K+ VFVY L+A ++ +E   +    K  I
Sbjct: 707 FRPGQKKKVFVYRLVAADSPEEKTHETAFNKEVI 740


>gi|315040573|ref|XP_003169664.1| hypothetical protein MGYG_08572 [Arthroderma gypseum CBS 118893]
 gi|311346354|gb|EFR05557.1| hypothetical protein MGYG_08572 [Arthroderma gypseum CBS 118893]
          Length = 1256

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 26/187 (13%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVA--YHFNSDLARLQKAF-------- 88
                E   +      K+  L  ++ +      +V         LA L            
Sbjct: 791 PASRAEMALYLARSAPKLCYLVKLLTQKKGKKCLVFLKSPMTLWLALLLLDLLEFKALVI 850

Query: 89  PQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             G   D+     + +N+      +L    A  G GLNL    N ++          +  
Sbjct: 851 HAGMDADEREQAARNFNDPAHDCQVLLTTYACGGVGLNLHGDCNTVILVE----PALNVN 906

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS---------TIQDLLLNA 197
            I    + R  + G ++   V+ L  Q++ D  +      K           + D  L  
Sbjct: 907 TII-QAIGRLHRLGQQQEQEVFILFLQHSWDRFIEHNSAKKMVGQIVADNADMFDKFLAE 965

Query: 198 LKKETIH 204
           ++    H
Sbjct: 966 IQARVEH 972


>gi|312877476|ref|ZP_07737438.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795732|gb|EFR12099.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 337

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
           +          G  +D+      E+   K  ++ A  A+   G+NLQ+   ++V + + W
Sbjct: 204 EWGYAVVTIHGGMNMDERIRAEHEFKN-KAQVMVATEAAG-EGINLQF-CWLMVNYDIPW 260

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +    +Q + RI      + G +  V +Y L++ +T +  +LQ+L  K       L + +
Sbjct: 261 NPNRLEQRMGRI-----HRYGQQSEVHIYNLVSGDTKEGQILQKLFQKLEAMRAHLGSDR 315


>gi|225562273|gb|EEH10552.1| ATP-dependent DNA helicase [Ajellomyces capsulatus G186AR]
          Length = 1468

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      L R    F  G +       ++++  +  +   
Sbjct: 1199 RHLIWLRQHDPGAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVEQFKTDPSVECF 1258

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G K+   V+  + 
Sbjct: 1259 LLHAKAHSSGLNL-INATHVFLCEPLINTA-----IELQAIARVHRIGQKQETTVWMYLV 1312

Query: 173  QNTIDELVLQR 183
             ++++E +   
Sbjct: 1313 SDSVEESIYDI 1323


>gi|303233580|ref|ZP_07320238.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495324|gb|EFL55072.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 3641

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + +   +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 3087 FIHKAKNNREKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDVPWRPADLAQ 3146

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 3147 RAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 3193


>gi|134299055|ref|YP_001112551.1| helicase domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051755|gb|ABO49726.1| helicase domain protein [Desulfotomaculum reducens MI-1]
          Length = 456

 Score = 51.3 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                     + ++  G I  L +  + CG G+N Q   N + F  L    E+       
Sbjct: 316 SHKPAYKEKAMLDFAAGDIKRLVSKSSICGFGMNFQ-VCNRMAFVGLSDSFEQIF----- 369

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + R  + G  + V VY +I   T +  VL+ ++ K      +++ + +
Sbjct: 370 QAIRRCWRFGQTKPVDVY-IITAET-EGAVLENIKRKEQDFKNMVDEMVR 417


>gi|195569075|ref|XP_002102537.1| GD19450 [Drosophila simulans]
 gi|194198464|gb|EDX12040.1| GD19450 [Drosophila simulans]
          Length = 85

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++   L W+ +      ER    R  + G  +  F+Y  + Q+T+++ +      K  I 
Sbjct: 1   MLIVDLHWNPQL-----ERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIA 55

Query: 192 DLLL 195
            ++L
Sbjct: 56  KVVL 59


>gi|169602036|ref|XP_001794440.1| hypothetical protein SNOG_03896 [Phaeosphaeria nodorum SN15]
 gi|160706060|gb|EAT89101.2| hypothetical protein SNOG_03896 [Phaeosphaeria nodorum SN15]
          Length = 1444

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  I      A  I+   F      L    + +  G +   D   IQ +  +  I   
Sbjct: 1213 RHLLWIRANDPGAKSIIFSQFGDFLEVLREALRKWRIGVSGIIDKEGIQRFKSDAGIECF 1272

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 S   GLNL      +       +       IE   + R  + G +R   V+  + 
Sbjct: 1273 LLDAKSDSSGLNLVN-ATYVFLCEPLINPA-----IELQAIARVHRIGQQRPTTVFMYLI 1326

Query: 173  QNTIDELVLQR 183
             +T++E +   
Sbjct: 1327 SDTVEEAIYDI 1337


>gi|302509586|ref|XP_003016753.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291180323|gb|EFE36108.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 2114

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 18/174 (10%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLA-----RLQKA 87
              +  +       +    K  A+  ++E     P    +++   F   +          +
Sbjct: 1902 CHSERHTPTDKLAKYGSSKFTAVIDLLEDTEKVPADDQVLLFIQFPELMDAASKALQSVS 1961

Query: 88   FPQGRTLDKDP---CTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             P       D      I E+  GK      +L  +              N ++FF     
Sbjct: 1962 IPHTVIQPGDRTPTSKISEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVS 2021

Query: 141  LEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              ++         + R R+ G  + V +Y+++A  T++  + +  R K  +   
Sbjct: 2022 RSQYDYDSGMAQAIGRSRRYGQLKHVHIYHVLALRTVEVNIFE-QRRKQYLAKR 2074


>gi|240254615|ref|NP_181609.4| ATP binding / DNA binding / helicase/ nucleic acid binding / protein
            binding / zinc ion binding [Arabidopsis thaliana]
 gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing
            protein [Arabidopsis thaliana]
          Length = 1664

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 102  QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  E  I +L        +GLNL      ++      +        E   V R  + G 
Sbjct: 1505 HQKEEKSIQVLLLLVQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAVGRVHRIGQ 1558

Query: 162  KRAVFVYYLIAQNTIDELVLQRLRTK 187
            ++   V+  +   T++E + +  R K
Sbjct: 1559 EKPTLVHRFLVSGTVEESIYKLNRNK 1584


>gi|224543131|ref|ZP_03683670.1| hypothetical protein CATMIT_02331 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523918|gb|EEF93023.1| hypothetical protein CATMIT_02331 [Catenibacterium mitsuokai DSM
           15897]
          Length = 517

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
             +   +  T  +      +   G++ +L       G G N+Q     +      W   +
Sbjct: 146 QVRFIHEATTDAQKKELFAKVRSGEVRVLLGSTPKMGAGTNVQDRLIAIHNLDCPWRPSD 205

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            +Q   RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 206 LEQRQGRIER----QGNMFLEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 255


>gi|168028268|ref|XP_001766650.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
 gi|162682082|gb|EDQ68503.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
           patens]
          Length = 1180

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 8/137 (5%)

Query: 60  EVIIEKANAAPIIVAYH-FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IPLLFAHPA 117
           E II  A+   ++     F                       +  +   + + +      
Sbjct: 428 EKIIIFAHHLKVLDTIQTFVQSKGVEYVRIDGSTLPQDRLKNVNRFRSQREVKVAIVGLQ 487

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G GL+       +VF  L     E           R  + G K +V +Y  +A+ T D
Sbjct: 488 AGGVGLDF-SAAQSVVFVELPKSASEML-----QAEDRAHRRGQKNSVNIYIFVAKGTAD 541

Query: 178 ELVLQRLRTKSTIQDLL 194
           +   Q L         +
Sbjct: 542 DRHWQSLSRSLERVSTM 558


>gi|229827047|ref|ZP_04453116.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
            49176]
 gi|229788665|gb|EEP24779.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
            49176]
          Length = 2218

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 1768 FIHDAGNDIQKEKVFSKVRTGEVRILMGSTHKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 1827

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V++Y  + +NT D  + Q +  K      ++ +
Sbjct: 1828 RAGRIVR----QGNENSDVYIYRYVTENTFDAYLWQTIENKQKFISQIMTS 1874


>gi|226322846|ref|ZP_03798364.1| hypothetical protein COPCOM_00618 [Coprococcus comes ATCC 27758]
 gi|225208827|gb|EEG91181.1| hypothetical protein COPCOM_00618 [Coprococcus comes ATCC 27758]
          Length = 720

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 326 FIHDANTEAKKTELFGKVKSGQVRFLIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQ 385

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V ++  + ++T D  + Q +  K      ++ +
Sbjct: 386 REGRIIR----QGNHNKKVHIFRYVTESTFDSYMWQLIENKQKFISQIMTS 432


>gi|300777180|ref|ZP_07087038.1| res subunit family type III restriction enzyme [Chryseobacterium
            gleum ATCC 35910]
 gi|300502690|gb|EFK33830.1| res subunit family type III restriction enzyme [Chryseobacterium
            gleum ATCC 35910]
          Length = 1345

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 39/230 (16%)

Query: 2    KQYH----KFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE----- 50
            K+Y         E Y  L    +  E     +  +    +A                   
Sbjct: 904  KEYKIEQNDLTEEQYEQLTDNFDENEKGAILTHILNARLIAISPYLSPYYYGEFPSVDEF 963

Query: 51   -VHDEKIKALEVIIEKANA---------APIIVAYHFNSDLARLQKAFPQGR-------- 92
              +  K+     +I +               +    F      L                
Sbjct: 964  IENSPKLNETMNLIRQNKRDIPEAGQIIYSELAVAEFPRMKEYLVTNIGYKPEEIGIITG 1023

Query: 93   --TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              T  +      ++N GKI ++    A    G+NLQ     L   SL ++    +Q+  R
Sbjct: 1024 ATTKSQRISIQNDFNIGKIKVIIGSEAI-QEGMNLQENTTDLYLLSLPYNFTTLRQVEGR 1082

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
                   Q      V V +++  ++ID  +LQ+L++K   Q   L A+KK
Sbjct: 1083 AWR----QGNRHENVRVNFMLTNDSIDVFMLQKLQSK---QARYLEAMKK 1125


>gi|121698875|ref|XP_001267835.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
            NRRL 1]
 gi|119395977|gb|EAW06409.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
            NRRL 1]
          Length = 2150

 Score = 51.3 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 54   EKIKALEVIIEKANA-APIIVAYHFNSDLARLQKAFP-----QGRTLDKDPCTIQEWNEG 107
             K+  L  I+         I+   +   +    KAF             D   I+E+ + 
Sbjct: 1971 SKLDKLIEIVRSIPKEDRAILFIQYKELIEIASKAFDLAKITHTVISAGDSKKIEEFKKP 2030

Query: 108  KI---PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKR 163
                  +L  +  S           N + F S      ++         + R R+ G  +
Sbjct: 2031 SFGNNRILILNLGSEMAAGLNLQCANHVFFLSPMLTQTQYDYDSSMTQAIGRARRYGQIK 2090

Query: 164  AVFVYYLIAQNTIDELVLQRLRTKS 188
             V VY+L+ + TID  + Q  R K 
Sbjct: 2091 HVHVYHLLVKRTIDVNIFQDRRGKI 2115


>gi|126697994|ref|YP_001086891.1| putative helicase [Clostridium difficile 630]
 gi|115249431|emb|CAJ67246.1| putative DNA/RNA helicase Tn1549-like,CTn2-Orf18 [Clostridium
            difficile]
          Length = 2907

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2355 FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2414

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2415 RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2461


>gi|254228180|ref|ZP_04921609.1| helicase [Vibrio sp. Ex25]
 gi|262394013|ref|YP_003285867.1| helicase putative [Vibrio sp. Ex25]
 gi|151939253|gb|EDN58082.1| helicase [Vibrio sp. Ex25]
 gi|262337607|gb|ACY51402.1| helicase putative [Vibrio sp. Ex25]
          Length = 1149

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ +     ++ +  ++    +      D  +     +            KI +L   +
Sbjct: 771 QLENKE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKIVSLLETL 827

Query: 64  EK--ANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           ++  +     I+                        S +    KA  + ++       I 
Sbjct: 828 DRVRSKHEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSAPTRKSMIS 887

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V     W+  +     E     R  + G +
Sbjct: 888 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERHWNPAK-----EAQATDRVYRIGQE 942

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 943 KDVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|296280707|gb|ADH04649.1| unknown [Chondromyces crocatus]
          Length = 993

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                + +N    P++         GL+L      +V   L W+  + +Q + R+     
Sbjct: 851 RERLREAFNTPLYPMILVANEVMQEGLDLHRHCRRIVHHDLAWNPAQLEQRVGRVDRIGS 910

Query: 157 ------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  +    +   +Y L+ + TIDE + + ++++    + LL A
Sbjct: 911 LTTKLLARDPSTKLDILYPLVHR-TIDERLFRTVKSREKWLEFLLGA 956


>gi|218200266|gb|EEC82693.1| hypothetical protein OsI_27351 [Oryza sativa Indica Group]
          Length = 1547

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                         +L        +GLNL      ++      +        E   ++R  
Sbjct: 1388 KAKKSFSKMQPAQVLLMLIQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAISRIH 1441

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQR 183
            + G  ++ F++  I +NTI+E + + 
Sbjct: 1442 RVGQDKSTFIHRFIVKNTIEESIYKL 1467


>gi|227500577|ref|ZP_03930626.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217318|gb|EEI82655.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 449

 Score = 50.9 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              + +   +      +  +G+I +L       G G N Q     +    + W   +  Q
Sbjct: 147 FIHKAKNNMEKDAIFDKVRKGEIRVLLGSTQKMGAGTNAQDKLIAIHDLDIPWRPADLSQ 206

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V ++  + +NT D  + Q L  K      ++ +
Sbjct: 207 RAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQIMTS 253


>gi|323452538|gb|EGB08412.1| hypothetical protein AURANDRAFT_64133 [Aureococcus anophagefferens]
          Length = 1459

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 17/171 (9%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQG 91
            L    +        +     K+  L   +E          +V   +   L  +  A  Q 
Sbjct: 1271 LCRQPLADARHDRSRVDFGAKLDELADDVEAHVTRKGLKCLVFSSWTDALDLVAVALKQR 1330

Query: 92   RTL-------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                       + P  ++ +  +  +  L  + ++   GLNL      +       D   
Sbjct: 1331 GVASLALKGGKQAPKILEAFKADPHVSALLMNISTNNAGLNL-SEATHVFLLDTNLDHAR 1389

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
                 E   + R ++   K    V+  +   +I++ + Q   +K+T    L
Sbjct: 1390 -----ETQALARVQRLDSKSETTVHRYVTGGSIEDAIWQLRLSKATAAGEL 1435


>gi|302653761|ref|XP_003018701.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291182365|gb|EFE38056.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 519

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 27/147 (18%)

Query: 61  VIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
             ++++    I +   F   ++                            I+ + E  + 
Sbjct: 274 NWLKESPDIKITIFTQFLGMISAIASVCEAEGWRYTTLCGKLHHRTRHANIKRFREENVS 333

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L +   + G GL+L    +  +   LWW+                     +  V +  +
Sbjct: 334 ILISSLKAGGVGLDLT-MASKCILVDLWWNEA----------------IEQQNDVEIIRI 376

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +NT+D+ +      KS      + +
Sbjct: 377 CVENTVDDRLQLIQSRKSEHIRKAMGS 403


>gi|261366396|ref|ZP_05979279.1| helicase [Subdoligranulum variabile DSM 15176]
 gi|282571656|gb|EFB77191.1| helicase [Subdoligranulum variabile DSM 15176]
          Length = 650

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 267 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 326

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI     +       V VY  + + T D  + Q +  K      ++ +
Sbjct: 327 RKGRIERQGNKNPL----VHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 373


>gi|117922220|ref|YP_871412.1| SNF2-like protein [Shewanella sp. ANA-3]
 gi|117614552|gb|ABK50006.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 1148

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 46/229 (20%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK----------HWKEV 51
           K Y      +   L+ E     +  +  ++    +      D  +               
Sbjct: 762 KVYEG---SIESQLENEE---SHVLTTLMRMRDTSLHPRLADGGRLDAPSSKNDLKQIFA 815

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFN-------------------SDLARLQKAFPQ 90
              K+K +  ++          I+                          +    KA  +
Sbjct: 816 ESAKLKKMIEVLTDIQSRREKCIIFAINKRLQRFLSIALGNYFGLGPLHVINGDTKAVVK 875

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +        I E+   +   L               G N +V F   W+  +     E 
Sbjct: 876 NKNTANRKSMIAEFEAKEGFNLIIFSPVAAGVGLTVVGANNVVHFERHWNPAK-----EA 930

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQN-TIDE---LVLQRLRTKSTIQDLLL 195
               R  + G  + V VY  I  + TI+     + + L  KS ++D ++
Sbjct: 931 QATDRVYRIGQTKDVNVYVPILHHPTIESFDVNLHRLLSQKSMLKDAVV 979


>gi|242786466|ref|XP_002480811.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218720958|gb|EED20377.1| SNF2 family helicase/ATPase, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1481

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDL----ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + L  + E    A  IV   +   L        +      +++      +   +      
Sbjct: 1241 RHLMWLREHDPGAKSIVFSQYRDFLGVLANAFSRFKIGFSSVEAKNGIQKFKEDAAAECF 1300

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1301 LLHARAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1354

Query: 173  QNTIDELVLQR 183
             +T++E + Q 
Sbjct: 1355 SDTVEESIYQI 1365


>gi|307108726|gb|EFN56965.1| hypothetical protein CHLNCDRAFT_21780 [Chlorella variabilis]
          Length = 119

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 17/115 (14%)

Query: 70  PIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPAS 118
             ++   + + +  L           +       L +    I     +    +      S
Sbjct: 9   KALIFSQYVTTIEWLKTRLTQAGFGYRFISGSMPLKQRAKAINAFQQDPPTTVFLLSMRS 68

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              G+NL    + +       +        E   + R  + G +R V V     +
Sbjct: 69  GSVGINLTA-ASHVFLMEPALNPAL-----EEQAIGRAWRMGQQRTVTVKKFYVK 117


>gi|258564666|ref|XP_002583078.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237908585|gb|EEP82986.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1355

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + L  +      A  IV   + S L       ++   +  ++D      +   E  +   
Sbjct: 1111 RHLIWLRHHDPGAKSIVFSQYKSFLGILANAFKRFKIEFSSIDSPDGIERFKKEPSVECF 1170

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1171 LLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLV 1224

Query: 173  QNTIDELVLQR 183
             ++++E + Q 
Sbjct: 1225 SDSVEESIYQI 1235


>gi|218297000|ref|ZP_03497686.1| helicase domain protein [Thermus aquaticus Y51MC23]
 gi|218242703|gb|EED09239.1| helicase domain protein [Thermus aquaticus Y51MC23]
          Length = 923

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++   E    +L A       G+NLQ G + +V + L W+    +Q   R+    Q
Sbjct: 523 RREAVEALMEESPRILVAT-DCVSEGVNLQEGFSAVVHYDLPWNPNRLEQREGRVDRYGQ 581

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           ++    + V V Y    N +DE V++ L  K+      L 
Sbjct: 582 KRP---KVVAVRYRGLDNPVDEKVVEVLLKKAERIREALG 618


>gi|115474095|ref|NP_001060646.1| Os07g0680500 [Oryza sativa Japonica Group]
 gi|33146657|dbj|BAC80003.1| SNF2/SWI2 family transcription factor-like protein [Oryza sativa
           Japonica Group]
 gi|50509527|dbj|BAD31220.1| SNF2/SWI2 family transcription factor-like protein [Oryza sativa
           Japonica Group]
 gi|113612182|dbj|BAF22560.1| Os07g0680500 [Oryza sativa Japonica Group]
 gi|215687240|dbj|BAG91805.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 184

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                        +L        +GLNL      ++      +        E   ++R  
Sbjct: 25  KAKKSFSKMQPAQVLLMLIQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAISRIH 78

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQR 183
           + G  ++ F++  I +NTI+E + + 
Sbjct: 79  RVGQDKSTFIHRFIVKNTIEESIYKL 104


>gi|302063935|ref|ZP_07255476.1| SNF2-related:helicase, C-terminal [Pseudomonas syringae pv. tomato
           K40]
          Length = 89

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G NL    N + F  L W               R  + G  R V V   +A +TID+
Sbjct: 3   AGTGYNLTA-ANYVFFLGLPWTPGLQD-----QAEDRAYRNGQLRMVVVKIPLADDTIDQ 56

Query: 179 LVLQRLRTKSTIQDLLLNALKKE 201
            + Q L  K  +   L++   +E
Sbjct: 57  QLWQMLMDKRALASDLIDLEAEE 79


>gi|169835045|ref|YP_001715648.1| superfamily II DNA/RNA helicase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409152|gb|ACA57562.1| superfamily II DNA and RNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 826

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +T  K    I  + EG I +L    +    G+N Q          + W   E  Q+ 
Sbjct: 473 HNAKTPAKKQKLINAFKEGDIRILIGSISKMAEGMNAQDRIIATHELDVPWKPAEIIQLE 532

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            R+      Q      V +Y  + + T D    Q +  K+   +  +
Sbjct: 533 GRMLR----QGNINSKVRIYRYVCKGTFDAFAWQTISRKANFIEQFM 575


>gi|167526014|ref|XP_001747341.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774176|gb|EDQ87808.1| predicted protein [Monosiga brevicollis MX1]
          Length = 951

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 46/152 (30%), Gaps = 14/152 (9%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLF 113
           +++   +A ++V   ++  L    K                          ++ +I +L 
Sbjct: 656 LVKHEPSAKVLVFSQWHEVLQLFCKFAEHNGVQTLLMKSGQQGANEVQHFQHDAQIKVLC 715

Query: 114 AHPASCGHGLNLQ-YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              +  G    L     N ++      +       +    + R ++ G  R   V+ L+ 
Sbjct: 716 LRLSLHGGANGLTLTAANHIILLDAELNPA-----MRAQALARVQRVGQARETHVHQLLI 770

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           +++I+  +             ++   K   + 
Sbjct: 771 EDSIEMGIFTAAEELHGRGSEVMEGQKTNELE 802


>gi|317496319|ref|ZP_07954676.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
 gi|316913565|gb|EFV35054.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
          Length = 1714

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 1162 FIHEANSDKQKDELFAKVRKGDVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 1221

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1222 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 1268


>gi|254241158|ref|ZP_04934480.1| helicase-like protein [Pseudomonas aeruginosa 2192]
 gi|126194536|gb|EAZ58599.1| helicase-like protein [Pseudomonas aeruginosa 2192]
          Length = 910

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R +          +     +   + K+ L+ A   +   GLNLQ  G ++    L W+  
Sbjct: 734 RSRLYRQGDSVAIERETLKRMVADRKLRLMIAT-DAACEGLNLQTLGTLIN-VDLPWNPT 791

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNAL 198
           + +Q I RI    Q +      V +  L+ + T+DE V  RL  +      +   L + +
Sbjct: 792 KLEQRIGRIKRFGQTRDK----VDMLNLVNEQTVDEKVYDRLSERMKDRFDLFGSLPDTI 847

Query: 199 KKETIH 204
           K E I 
Sbjct: 848 KDEWID 853


>gi|294950395|ref|XP_002786608.1| snf2 histone linker phd ring helicase, putative [Perkinsus marinus
            ATCC 50983]
 gi|239900900|gb|EER18404.1| snf2 histone linker phd ring helicase, putative [Perkinsus marinus
            ATCC 50983]
          Length = 1367

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 99   CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              ++ + +G++  L    AS G GLNL    + ++        +            R  +
Sbjct: 1263 KMVERFFDGRVRTLLCPLASAGQGLNLTVASHAILLEPPPKYSQTA------QAAARIWR 1316

Query: 159  AGFKRAVFVYYLIAQNTIDELVLQR-----LRTKSTIQDLLLNALKKETI 203
             G ++   V++ ++  T++E +            + +   + + L  E +
Sbjct: 1317 LGQQKEATVWHFVSCRTVEEAMWTLSRRADQEEDAELLRDIFSGLTGERV 1366


>gi|291544286|emb|CBL17395.1| Helicase conserved C-terminal domain [Ruminococcus sp. 18P13]
          Length = 390

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
             ++ N GK  ++ A  ++ G G N+Q     +    + W   + +Q   RI      Q 
Sbjct: 5   IFRDINAGKYRVVIASTSTLGTGANVQERLAAVHHVDIPWKPSDFEQREGRILR----QG 60

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                V ++  I + T+D  + Q +  K+     LL+ 
Sbjct: 61  NSFSEVQIFNYITEGTMDSYLYQVVTDKARFIAQLLDD 98


>gi|253578091|ref|ZP_04855363.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850409|gb|EES78367.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39BFAA]
          Length = 2587

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +LF      G G N+Q     +      W   + +Q
Sbjct: 2219 FIHEATTDAQKKELFGKVRSGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQ 2278

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 2279 RQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 2325


>gi|257125725|ref|YP_003163839.1| helicase [Leptotrichia buccalis C-1013-b]
 gi|257049664|gb|ACV38848.1| helicase domain protein [Leptotrichia buccalis C-1013-b]
          Length = 2131

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +  +      +   G + +L       G G N+Q     L    + W   + +Q
Sbjct: 1767 FIHNANSEKQKDELFAKVRTGDVRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQ 1826

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1827 RAGRIVR----QGNENKKVEIYRYVTENTFDAYLWQTIENKQKFISQIMTS 1873


>gi|302908977|ref|XP_003049971.1| hypothetical protein NECHADRAFT_106359 [Nectria haematococca mpVI
            77-13-4]
 gi|256730908|gb|EEU44258.1| hypothetical protein NECHADRAFT_106359 [Nectria haematococca mpVI
            77-13-4]
          Length = 1287

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEW-NEGK 108
            D  +K L  + E    A  I+   +   LA L+        G T   D   I  +  +  
Sbjct: 1053 DTLVKHLLWLRESDPGAKSIIFSQYKGFLAILRNAFSRSRIGFTSIDDANGITRFKEDPS 1112

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +     H  +   GLNL    + +       +     Q I R+      + G +    V+
Sbjct: 1113 VECFLLHARAHSSGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RIGQQHETTVW 1166

Query: 169  YLIAQNTIDELVLQRLRTKS 188
              +   T++E +      + 
Sbjct: 1167 LYLVTGTVEESIYNLSVQRR 1186


>gi|226355509|ref|YP_002785249.1| hypothetical protein Deide_06480 [Deinococcus deserti VCD115]
 gi|226317499|gb|ACO45495.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 916

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +         T  +      +  +G + LL     +   GLNLQ   N++    L W+  
Sbjct: 731 QSGFYDNGDFTGCERQALKDQVRDGTVTLLVGT-DAASEGLNLQRLSNLINI-DLPWNPT 788

Query: 143 EHQQMIERIGVTRQRQAGFKR-AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             +Q   RI     ++ G K   + +Y +  Q +I++ V QRL  +      L  
Sbjct: 789 RLEQRKGRI-----QRIGQKHSTIRIYNMRYQGSIEDRVHQRLSERFGDIAALFG 838


>gi|154321994|ref|XP_001560312.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
 gi|150850391|gb|EDN25584.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
          Length = 730

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 21/167 (12%)

Query: 45  EKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFN-----------SDLARLQKAFP 89
            +        ++  L  +            +++   F             D       + 
Sbjct: 534 RRPNIVKESGRLSKLMELYRHLTITYPERKMVMFSCFLKFLDVVEEGLLRDYKIQPLRYD 593

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                D+ P   + + E K  +     A            +I++    WW+     + +E
Sbjct: 594 GTTPTDQRPKIEEAYGESKSNVPLLMTAGSSSIGLNITSASIVIMCEPWWN-----RNLE 648

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLL 195
           +  + R  + G ++ V +Y     N+ ID+ VL     K  + + L+
Sbjct: 649 KQAIARVYRQGQQKNVLLYRFFGLNSEIDQEVLSVAEAKVAVNEDLM 695


>gi|239826792|ref|YP_002949416.1| helicase [Geobacillus sp. WCH70]
 gi|239807085|gb|ACS24150.1| helicase domain protein [Geobacillus sp. WCH70]
          Length = 1062

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 8/102 (7%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            ++++    ++ + + + P++ A   + G  +NLQ+  N ++ + + W+  + +Q + RI
Sbjct: 518 FSMEERRKQVERF-KHECPIMLAT-DAGGESINLQF-CNQMINYDIPWNPNKLEQRMGRI 574

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 + G +  VFV+ L+A NT +  VL  L TK      
Sbjct: 575 -----HRIGQRNEVFVFNLVAGNTREGDVLLTLMTKMEQMRK 611


>gi|284924503|emb|CBG37639.1| putative helicase [Escherichia coli 042]
          Length = 963

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 19/174 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +++++  Q     +  +  +             +                   +  + 
Sbjct: 427 IFTESMRTQQYLAHFLENNGYQGKVVTFSGTNNTPQANKIYQQW----------REEYQG 476

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +DK    I  + +    ++ A   +   G+NLQ+  ++L+ +   W+ +  
Sbjct: 477 SSRITGSAQIDKRSALIDHFKD-HAEIMIAT-EAAAEGVNLQF-CSLLINYDFPWNPQRI 533

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q I R       + G K  V V   +  +N  D+ VL+ L  K ++ D +  A
Sbjct: 534 EQRIGRC-----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|295672956|ref|XP_002797024.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb01]
 gi|226282396|gb|EEH37962.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb01]
          Length = 1480

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGK 108
            D   + L  + +    A  IV   +   L               ++D    T +   +  
Sbjct: 1221 DNLARHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFRIGFSSIDYHDGTERFKRDPS 1280

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I     H  +   GLNL      +       +       IE   + R  + G  R   V+
Sbjct: 1281 IECFLLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVW 1334

Query: 169  YLIAQNTIDELVLQR 183
              +  ++++E +   
Sbjct: 1335 MYLVSDSVEESIYDI 1349


>gi|159124104|gb|EDP49222.1| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus A1163]
          Length = 1483

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  + E    A  I+   + + L  L      F  G +   +   I+ +  +  +   
Sbjct: 1255 RHILWLREHDPGAKSIIFSQYKTFLEVLGTAFSRFKIGYSSIDNADGIERFKSDPAVECF 1314

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1315 FLHAKAQSSGLNLVN-ATHVFLCEPLVNTA-----IELQAIARVHRIGQHRPTTVWMYLV 1368

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +T+++ + +   ++  +  ++     KE + 
Sbjct: 1369 SDTVEQSIYELSVSRR-LAHIVQKEKVKEALD 1399


>gi|146324369|ref|XP_750547.2| SNF2 family helicase/ATPase [Aspergillus fumigatus Af293]
 gi|129557212|gb|EAL88509.2| SNF2 family helicase/ATPase, putative [Aspergillus fumigatus Af293]
          Length = 1461

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  + E    A  I+   + + L  L      F  G +   +   I+ +  +  +   
Sbjct: 1233 RHILWLREHDPGAKSIIFSQYKTFLEVLGTAFSRFKIGYSSIDNADGIERFKSDPAVECF 1292

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1293 FLHAKAQSSGLNLVN-ATHVFLCEPLVNTA-----IELQAIARVHRIGQHRPTTVWMYLV 1346

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +T+++ + +   ++  +  ++     KE + 
Sbjct: 1347 SDTVEQSIYELSVSRR-LAHIVQKEKVKEALD 1377


>gi|119467932|ref|XP_001257772.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
 gi|119405924|gb|EAW15875.1| SNF2 family helicase/ATPase, putative [Neosartorya fischeri NRRL 181]
          Length = 1509

 Score = 50.9 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  + E    A  I+   + + L  L      F  G +   +   I+ +  +  +   
Sbjct: 1281 RHILWLREHDPGAKSIIFSQYKTFLEVLGTAFSRFKIGYSSIDNADGIERFKSDPAVECF 1340

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1341 FLHAKAQSSGLNLVN-ATHVFLCEPLVNTA-----IELQAIARVHRIGQHRPTTVWMYLV 1394

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
             +T+++ + +   ++  +  ++     KE + 
Sbjct: 1395 SDTVEQSIYELSVSRR-LAHIVQKEKVKEALD 1425


>gi|148654631|ref|YP_001274836.1| helicase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566741|gb|ABQ88886.1| helicase domain protein [Roseiflexus sp. RS-1]
          Length = 986

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 4/121 (3%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F    A    +    R+ ++    I E       +L A       G+NLQ+  + +V +
Sbjct: 525 QFERIPAVRVMSVTGERSEEERDMMIAELERSPRRILVAT-DCLSEGINLQHSFDAVVHY 583

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+    +Q   R+    Q ++   R V +Y     N +DE V++ L  K+      L
Sbjct: 584 DLPWNPNRLEQREGRVDRYGQ-RSAVVRTVLIY--GQDNPMDEAVMKVLLRKAVRIHKTL 640

Query: 196 N 196
            
Sbjct: 641 G 641


>gi|21754110|dbj|BAC04459.1| unnamed protein product [Homo sapiens]
          Length = 131

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                    + +I +L     +  +GL +      ++      +     Q I R+     
Sbjct: 13  QENLSAFKRDPQINILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHELQAIGRV----- 66

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            + G  +   V+  + + TI+E +   L+
Sbjct: 67  HRIGQTKPTIVHRFLIKATIEERMQAMLK 95


>gi|306821025|ref|ZP_07454644.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550966|gb|EFM38938.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 2662

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G + +L       G G N+Q     L    + W   + +Q
Sbjct: 2114 FIHEANSDKQKDELFAKLRKGDVRILIGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2173

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2174 RSGRIIR----QGNENEEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2220


>gi|225680757|gb|EEH19041.1| DNA repair protein rad5 [Paracoccidioides brasiliensis Pb03]
          Length = 1432

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGK 108
            D   + L  + +    A  IV   +   L               ++D    T +   +  
Sbjct: 1173 DNLARHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFKIGFSSIDYHDGTERFKRDPS 1232

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I     H  +   GLNL      +       +       IE   + R  + G  R   V+
Sbjct: 1233 IECFLLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVW 1286

Query: 169  YLIAQNTIDELVLQR 183
              +  ++++E +   
Sbjct: 1287 MYLVSDSVEESIYDI 1301


>gi|261329152|emb|CBH12131.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1612

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              +  +LF        GLNL    N L+F     +  +HQQ + RI           +  
Sbjct: 1497 NNRGHVLFLSSRVACSGLNL-VFANRLIFMEPNLNPAQHQQAVGRIDRCG-----QLKRT 1550

Query: 166  FVYYLIAQNTIDELVLQR 183
            +VY + A  TI+E ++ R
Sbjct: 1551 YVYVMYAPRTIEERIMNR 1568


>gi|119596380|gb|EAW75974.1| chromodomain helicase DNA binding protein 6, isoform CRA_a [Homo
           sapiens]
          Length = 952

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 50/186 (26%), Gaps = 37/186 (19%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 744 KYYRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSP 803

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 804 DAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 863

Query: 97  ---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 864 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQNDL 922

Query: 146 QMIERI 151
           Q+  R+
Sbjct: 923 QVTTRM 928


>gi|72390878|ref|XP_845733.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175831|gb|AAX69958.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802269|gb|AAZ12174.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1541

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
              +  +LF        GLNL    N L+F     +  +HQQ + RI           +  
Sbjct: 1426 NNRGHVLFLSSRVACSGLNL-VFANRLIFMEPNLNPAQHQQAVGRIDRCG-----QLKRT 1479

Query: 166  FVYYLIAQNTIDELVLQR 183
            +VY + A  TI+E ++ R
Sbjct: 1480 YVYVMYAPRTIEERIMNR 1497


>gi|310831061|ref|YP_003969704.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386245|gb|ADO67105.1| putative superfamily II helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 773

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARL---------QKAFPQGRTLDKDPCTIQEWN 105
           KI  +  II+K   +  I+  H++     +         +    +G          +   
Sbjct: 643 KISYVMDIIKKEPDSRFIIFSHWDKMFKMISQVFDTNNIKYVNIKGNMHKIANSIRKFKI 702

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +I ++         G NL    N ++F   ++   +  +      V R  + G  + +
Sbjct: 703 DNEIKVIMLSSDKANSGCNLTE-ANHIIFLDNYYLTNDTIK----QSVGRAHRIGQTKKL 757

Query: 166 FVYYLIAQNTIDEL 179
            V  LI +NT+++ 
Sbjct: 758 KVTRLIMENTLEDK 771


>gi|87198378|ref|YP_495635.1| helicase-like [Novosphingobium aromaticivorans DSM 12444]
 gi|87134059|gb|ABD24801.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
          Length = 933

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 19/179 (10%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN--------- 78
           +  +  QL + A   +          E +  ++ +  K  A P+I    F          
Sbjct: 437 EIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPVI-FCRFIATAEAVGEA 495

Query: 79  ---SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                 +   +      T ++    ++   +    +L A       G+NLQ   N +V +
Sbjct: 496 LRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVAT-DCLSEGINLQSLFNAVVHY 554

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDL 193
            L W+   HQQ   R+    Q        V+   +   N+ ID  V++ +  K      
Sbjct: 555 DLNWNPTRHQQRDGRVDRFGQ----QAERVWSVMMFGANSIIDGAVIKVITEKMKRIQK 609


>gi|301057976|ref|ZP_07199033.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
 gi|300447943|gb|EFK11651.1| helicase C-terminal domain protein [delta proteobacterium NaphS2]
          Length = 164

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+ + +     +     +   G+NLQ+  ++++ F L W+ +  +Q I R      
Sbjct: 81  RTAIIEHFRDNAS--ILIATEAAAEGINLQF-CSLVINFDLPWNPQRIEQRIGRC----- 132

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRT 186
            + G K  V V   + + N  D  V + L  
Sbjct: 133 HRYGQKHDVVVINFLNERNAADRRVYELLNE 163


>gi|54026418|ref|YP_120660.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54017926|dbj|BAD59296.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1136

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 28/198 (14%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           +   +L+           +    +QLA       +++ W E+                  
Sbjct: 442 QTVAELE-------TELRELAGLIQLAKQVRDRGDDRKWSELSRILQDEGLTNDSSGRPR 494

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--------------QEWNEGKIPLLFAH 115
            +I+       L  L+               I              +        +L A 
Sbjct: 495 KLIIFTEHRDTLEYLRGRIGSLLGRPDAVQVIHGGVRRGERRRITEEFTKNRDCRILLAT 554

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            A+   GLNLQ   +++V + L W+    +Q   RI      + G +    ++ L+A NT
Sbjct: 555 DAAG-EGLNLQA-AHLMVNYDLPWNPNRIEQRFGRI-----HRIGQEEVCRLWNLVALNT 607

Query: 176 IDELVLQRLRTKSTIQDL 193
            +  V  RL  K   Q  
Sbjct: 608 REGEVFARLLEKIEEQRK 625


>gi|320527864|ref|ZP_08029032.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
 gi|320131801|gb|EFW24363.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
          Length = 2915

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2363 FIHEANSDKQKEELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2422

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2423 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2469


>gi|317055081|ref|YP_004103548.1| SNF2-like protein [Ruminococcus albus 7]
 gi|315447350|gb|ADU20914.1| SNF2-related protein [Ruminococcus albus 7]
          Length = 305

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
           + Y + +R+L       +I+A N+AS + K LQ+ANGAV     + 
Sbjct: 259 RLYDQMKRDLIIPTDDGDIDAANAASLSNKLLQMANGAVMQGWNQP 304


>gi|268611923|ref|ZP_06145650.1| putative helicase [Ruminococcus flavefaciens FD-1]
          Length = 628

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T  +      +   G+I +L    A  G G N+Q     +    + W   + +Q
Sbjct: 233 YIHDAKTEQQKADLFDKVRSGEILVLLGSTAKMGTGTNVQKKLIAVHDLDIPWRPADLEQ 292

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + V ++  + + T D    Q L  K      ++ +
Sbjct: 293 RAGRIIR----QGNENKQVQIFRYVTKGTFDAYSYQTLENKQKFISQIMTS 339


>gi|76154388|gb|AAX25878.2| SJCHGC08203 protein [Schistosoma japonicum]
          Length = 190

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 43/187 (22%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDE----------------------------EKH 47
           +          +  ++  ++ N    +                              E  
Sbjct: 1   KKGKGGCRTLMNTIMQLRKICNHPFMFPHIEMAIAEQNFLNIHNGNPPPSLPVPTQVEGK 60

Query: 48  WKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD---------- 95
                  K + L+ I+   K     +++     S +  +Q  F                 
Sbjct: 61  ILYRSSGKFELLDRILPKLKCCGHRVLIFCQMTSLMTIMQDYFDYRNFRYLRLDGTTRSE 120

Query: 96  KDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                + ++N+    I +      + G GLNLQ   + ++ F   W+  +  Q  +R   
Sbjct: 121 DRGELLVKFNDTSEDIFIFLLSTRAGGLGLNLQA-ADTVIIFDSDWNPHQDLQAQDRAHR 179

Query: 154 TRQRQAG 160
             Q+   
Sbjct: 180 IGQQMRF 186


>gi|322780853|gb|EFZ10082.1| hypothetical protein SINV_14375 [Solenopsis invicta]
          Length = 244

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 49/189 (25%), Gaps = 38/189 (20%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y   ++       G         +  ++  +  N A      +  +E  +E      +
Sbjct: 69  KNYEALRK-------GVKGSTTTFLNIVIELKKCCNHAFLTKPIEAEREKTNEDYLQQLI 121

Query: 62  -------------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------P 98
                        +  +     +++       L  L +   +     +            
Sbjct: 122 RGSGKLVLLDKLLVRLRDTGHRVLIFSQMVKMLDILGEYLQRRHFPFQRLDGSIKGELRK 181

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +  +N              + G G+NL    + ++ F   W+ +      +     R 
Sbjct: 182 QALDHFNAEGSQDFCFLLSTRAGGLGINL-ATADTVIIFDSDWNPQN-----DLQAQARA 235

Query: 157 RQAGFKRAV 165
            + G K  V
Sbjct: 236 HRIGQKNKV 244


>gi|290969266|ref|ZP_06560791.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780772|gb|EFD93375.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 2905

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2353 FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2412

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2413 RAGRIVR----QGNENKEVSIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2459


>gi|160946660|ref|ZP_02093863.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
 gi|158447044|gb|EDP24039.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
          Length = 2913

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2361 FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2420

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2421 RAGRIVR----QGNENKEVSIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2467


>gi|219117189|ref|XP_002179389.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409280|gb|EEC49212.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1843

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT-------IQEWNEGKIPLL 112
            +++  +      IV   +   +   Q+A            +       +++       +L
Sbjct: 1678 DIMDVQDKGEKSIVFSQWEDMIDICQQALEDNAVGYTRARSLKDLSGSVRDLQSVGCDVL 1737

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              +      GL +    + +       +        +   + R  + G  R  +V+  I 
Sbjct: 1738 LLNVKKAAEGLTILE-ASHVFLVEPLLNHSL-----DSQALARINRIGQTRKTYVHRYIM 1791

Query: 173  QNTIDELV 180
            ++TI+  +
Sbjct: 1792 EDTIEVKI 1799


>gi|145345811|ref|XP_001417393.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577620|gb|ABO95686.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 2017

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 95   DKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +    + E+ +  +       LL         G NL    + +    L  +  +     
Sbjct: 1915 HQQTGALDEFQKENLKKDDARVLLLLSRDESASGANLTTANHAIFVHPLLTNTAQEYIAS 1974

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            E   + R R+ G +R V ++  IA++++D  +L
Sbjct: 1975 ETQAIGRIRRYGQQREVRIWRFIARDSVDSEIL 2007


>gi|301623129|ref|XP_002940874.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Xenopus
            (Silurana) tropicalis]
          Length = 1954

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 22/48 (45%)

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            I     +R  + G    V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1100 IFSQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1147


>gi|222637695|gb|EEE67827.1| hypothetical protein OsJ_25598 [Oryza sativa Japonica Group]
          Length = 1663

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             +L        +GLNL      ++      +        E   ++R  + G  ++ F++ 
Sbjct: 1516 QVLLMLIQHGANGLNLLE-AQHVILVEPLLNPAA-----EAQAISRIHRVGQDKSTFIHR 1569

Query: 170  LIAQNTIDELVLQR 183
             I +NTI+E + + 
Sbjct: 1570 FIVKNTIEESIYKL 1583


>gi|108802453|ref|YP_642649.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119855279|ref|YP_935882.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|108772872|gb|ABG11593.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119697996|gb|ABL95067.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 1069

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           + +   ++        + +  G   ++     +   G++LQ   ++LV + + W L   +
Sbjct: 490 QMYSGRQSKPDRDEVRKAFMRGDFQIIV-TTDAGNEGIDLQA-AHVLVNYDIPWSLVRLE 547

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRT 186
           Q + RI      + G +R V +Y L+A +T + E +L+ L  
Sbjct: 548 QRMGRI-----HRVGQQREVHLYNLVATDTREGETLLRLLDN 584


>gi|254523728|ref|ZP_05135783.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
 gi|219721319|gb|EED39844.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
          Length = 4560

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              + +K        N  +I ++    AS G G+N+Q     +      W   + +Q   R
Sbjct: 2616 STSKEKRKEVADRMNRSEIRVVIGSTASLGVGVNMQRNLRAMHHLDAPWMPGDLEQRNGR 2675

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                   Q      V  Y  +  + +D    Q L  K       L
Sbjct: 2676 GHR----QGNQWNTVLEYRYLT-DRLDGRRWQVLAVKDRFIKAFL 2715


>gi|323448985|gb|EGB04877.1| hypothetical protein AURANDRAFT_1482 [Aureococcus anophagefferens]
          Length = 411

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F                  +    I+ +  +    +      +C +GLN+    + ++F 
Sbjct: 306 FQKIKGATTIRVDGSVPGAQREERIKRFKTDATCRVALLSMGTCSNGLNMTE-ASTILFA 364

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + W   +H Q  +RI      +     A  +YY +  N++   + +RL+ K
Sbjct: 365 EMTWSPTDHMQAEDRI-----HRVSQTNACNIYYAMLPNSLGSFMFRRLQAK 411


>gi|284005657|ref|YP_003391477.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283820841|gb|ADB42678.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 1674

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 53/184 (28%), Gaps = 4/184 (2%)

Query: 16   QGENIEAFN-SASKTVKCLQLANGAVYYD-EEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
            + E     N +A++ ++  QL++             +         +  +       +  
Sbjct: 1225 EDEPGSKLNRAAAEILRLYQLSDSYKGTQLVFADVYQSPANLFADEDERLCVGARFNLFD 1284

Query: 74   AYHFN--SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                   ++     +        DK      +   G++ ++       G G+N+Q     
Sbjct: 1285 DLKMKLVAEGIPACEVAVCPAEADKREAVFAKVRTGEVRVMLGTSERMGVGVNVQERLVG 1344

Query: 132  LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            L          + +Q   RI       A +   + +       T+D     RL  K    
Sbjct: 1345 LHHLDAPNRPTDFEQRNGRIIRQGNAHAAWNMPIEILTYGVDKTLDATAYGRLAIKQKFI 1404

Query: 192  DLLL 195
            + +L
Sbjct: 1405 NQVL 1408


>gi|134084700|emb|CAK47319.1| unnamed protein product [Aspergillus niger]
          Length = 1485

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 11/149 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  + E    A  +V   + + L  L            ++D         ++  +   
Sbjct: 1247 RHILWLREHDPGAKSVVFSQYKNFLEILANALSRFKIGFSSVDAKDGIQNFKSDPAVECF 1306

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1307 LLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1360

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +T+++ +     ++  +  ++    K+E
Sbjct: 1361 SDTVEQSIYDLSVSRR-LAHIVQKEKKQE 1388


>gi|94985644|ref|YP_605008.1| helicase-like protein [Deinococcus geothermalis DSM 11300]
 gi|94555925|gb|ABF45839.1| helicase-like protein [Deinococcus geothermalis DSM 11300]
          Length = 933

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGR------------TLDKDPCTIQEWNEGKIPLLFA 114
           +    IV   F +    + +A   G             + ++    + +    +  +L A
Sbjct: 476 SGHHPIVFCRFIATAEYVAQALRSGLDGVEVRAVTGRLSPEEREAVVADLATAERRILVA 535

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI-AQ 173
                  G+NLQ   + ++ + L W+    +Q   R+    Q      +AV V  L  A 
Sbjct: 536 T-DCLSEGINLQQDFSAVIHYDLPWNPTRLEQREGRVDRYGQP----SKAVKVVTLYGAD 590

Query: 174 NTIDELVLQRLRTKSTIQDLLLN 196
           N ID ++L+ L  K       L 
Sbjct: 591 NRIDRIILEVLVRKHRTIRGTLG 613


>gi|325089460|gb|EGC42770.1| ATP-dependent DNA helicase [Ajellomyces capsulatus H88]
          Length = 1490

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      L R    F  G +       ++++  +  +   
Sbjct: 1240 RHLIWLRQHDPGAKSIVFSQYKPFLGILGRAFSHFKIGYSSIDSSDGVEQFKTDPSVECF 1299

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G K+   V+  + 
Sbjct: 1300 LLHAKAYSSGLNL-INATHVFLCEPLINTA-----IELQAIARVHRIGQKQETTVWMYLV 1353

Query: 173  QNTIDELVLQR 183
             ++++E +   
Sbjct: 1354 SDSVEESIYDI 1364


>gi|307244421|ref|ZP_07526532.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
 gi|306492240|gb|EFM64282.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
          Length = 2967

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2415 FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2474

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2475 RSGRIVR----QGNENNEVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2521


>gi|289423014|ref|ZP_06424834.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289156588|gb|EFD05233.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2659

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     +    + W   + +Q
Sbjct: 2229 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQ 2288

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2289 RSGRIVR----QGNENKEVSIYRYVTENTFDSYLWQTIENKQKFISQIMTS 2335


>gi|312966020|ref|ZP_07780246.1| putative helicase [Escherichia coli 2362-75]
 gi|312289263|gb|EFR17157.1| putative helicase [Escherichia coli 2362-75]
          Length = 963

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 19/174 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +++++  Q     +  +  +             +                   +  + 
Sbjct: 427 IFTESMRTQQYLAHFLENNGYQGKVVTFSGTNNTPQANKIYQQW----------REEYQG 476

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +DK    I  + +    ++ A   +   G+NLQ+  ++L+ + L W+ +  
Sbjct: 477 SSRITGSAQIDKRSALIDHFKD-HAEIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRI 533

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q I R       + G K  V V   +  +N  D+ VL+ L  K ++ D +  A
Sbjct: 534 EQRIGRC-----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|255102544|ref|ZP_05331521.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-63q42]
          Length = 2872

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2318 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2377

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  I +NT D  + Q +  K      ++ +
Sbjct: 2378 RSGRIVR----QGNENNEVNIYRYITENTFDAYLWQTIENKQKFISQIMTS 2424


>gi|322412357|gb|EFY03265.1| helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1998

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T DK     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDDKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               R+      Q    + V +Y+ I + + D
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFD 1988


>gi|310792778|gb|EFQ28239.1| DNA repair protein RAD8 [Glomerella graminicola M1.001]
          Length = 1481

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 14/154 (9%)

Query: 45   EKHWKEVHDEKIKALEVIIEKANAA--PIIVAYHFNSDLARLQKAFPQGRTL-------- 94
            +   + V   KI  +E II         +++   +    + +      G           
Sbjct: 1273 DTDLEAVPSSKILEIENIILDEVGDDEKVLIFAAYAGIKSEIHTQLFDGVDDSIGVYMTD 1332

Query: 95   --DKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              D+D  TI  + + +   +L     S           N ++F  + +   ++  M    
Sbjct: 1333 GGDQDSQTIDSFKKHQGKAVLIQSLMSSESAGTNLTEANHVIFAGVLFTDSDNYTMYMNQ 1392

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVL-QRL 184
               R  + G  R V +Y+L++  T++  +  QR 
Sbjct: 1393 AKGRVIRQGQTRKVAIYHLVSPGTLEFDIFNQRQ 1426


>gi|38491999|gb|AAM03043.3| hypothetical protein [Helicobacter pylori]
          Length = 2879

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     +  N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2373 FIHDAKTEEQKQDLFKRVNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2432

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2433 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2488


>gi|240144863|ref|ZP_04743464.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257203086|gb|EEV01371.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 641

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  +      +   G++  L    A  G G N+Q     L    + W   + +Q
Sbjct: 193 FIHDANTEKRKAELFAKVRSGQVRFLLGSTAKMGAGTNVQDRLIALHHLDVPWRPSDIEQ 252

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V ++  + + T D    Q +  K      ++ +
Sbjct: 253 QEGRILR----QGNMNDKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 299


>gi|317009412|gb|ADU79992.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
          Length = 2866

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G+I +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2360 FIHDAKTEEQKQDLFKKLNRGEIRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2419

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2420 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2475


>gi|157158933|ref|YP_001465831.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300938291|ref|ZP_07153056.1| protein, SNF2 family [Escherichia coli MS 21-1]
 gi|157080963|gb|ABV20671.1| type III restriction enzyme, res subunit [Escherichia coli E24377A]
 gi|300456746|gb|EFK20239.1| protein, SNF2 family [Escherichia coli MS 21-1]
          Length = 963

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 19/174 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +++++  Q     +  +  +             +                   +  + 
Sbjct: 427 IFTESMRTQQYLAHFLENNGYQGKVVTFSGTNNTPQANKIYQQW----------REEYQG 476

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +DK    I  + +    ++ A   +   G+NLQ+  ++L+ + L W+ +  
Sbjct: 477 SSRITGSAQIDKRSALIDHFKD-HAEIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRI 533

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q I R       + G K  V V   +  +N  D+ VL+ L  K ++ D +  A
Sbjct: 534 EQRIGRC-----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|75759221|ref|ZP_00739322.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74493284|gb|EAO56399.1| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 824

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 17/120 (14%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV--HDEKIKA 58
            Y +  ++   +++G               K  Q+ N    Y +E+  + V     K K 
Sbjct: 695 LYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQNVVERSMKTKT 754

Query: 59  LEVII--EKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWN 105
           L  +I   K      ++   +      L++                         I+E+ 
Sbjct: 755 LMELIENIKDQNESCLIFTQYIGMGNMLKRVLEEQFGQRVLFLNGSVPKKNRDKMIEEFQ 814


>gi|226292448|gb|EEH47868.1| ATP-dependent DNA helicase [Paracoccidioides brasiliensis Pb18]
          Length = 1440

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 53   DEKIKALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGK 108
            D   + L  + +    A  IV   +   L               ++D    T +   +  
Sbjct: 1181 DNLARHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFKIGFSSIDYHDGTERFKRDPS 1240

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            I     H  +   GLNL      +       +       IE   + R  + G  R   V+
Sbjct: 1241 IECFLLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVW 1294

Query: 169  YLIAQNTIDELVLQR 183
              +  ++++E +   
Sbjct: 1295 MYLVSDSVEESIYDI 1309


>gi|319744479|gb|EFV96836.1| SNF2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1998

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 1902 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 1961

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               R+      Q    + V +Y+ I + + D
Sbjct: 1962 RNGRLIR----QGNMHQEVDIYHYITKGSFD 1988


>gi|18390848|ref|NP_563806.1| MOM (MORPHEUS MOLECULE) [Arabidopsis thaliana]
 gi|30680475|ref|NP_849608.1| MOM (MORPHEUS MOLECULE) [Arabidopsis thaliana]
 gi|75185434|sp|Q9M658|MOM1_ARATH RecName: Full=Helicase protein MOM1; AltName: Full=Protein
           MAINTENANCE OF METHYLATION; AltName: Full=Protein
           MORPHEUS MOLECULE 1
 gi|8132770|gb|AAF73381.1| MOM [Arabidopsis thaliana]
 gi|332190115|gb|AEE28236.1| ATP-dependent helicase family protein [Arabidopsis thaliana]
 gi|332190116|gb|AEE28237.1| ATP-dependent helicase family protein [Arabidopsis thaliana]
          Length = 2001

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 29/193 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH------------- 76
             QL    +   E    +     K+  L+ ++     N    +V Y              
Sbjct: 537 LKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQATQTPEGLLLGNI 596

Query: 77  ---FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              F       +       +  K+        E +  +L     +C   + L    +  +
Sbjct: 597 LEDFVGQRFGPKSYEHGIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLLR-ADAFI 655

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL--VLQRLRTKSTIQ 191
            F    +     + +E+I +    +        ++ L +  T++E   +L R   +   Q
Sbjct: 656 LFGSSLNPSHDVKHVEKIKIESCSER-----TKIFRLYSVCTVEEKALILARQNKR---Q 707

Query: 192 DLLLNALKKETIH 204
           +  +  L +   H
Sbjct: 708 NKAVENLNRSLTH 720


>gi|327348280|gb|EGE77137.1| hypothetical protein BDDG_00074 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1438

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 21/161 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      LAR    F  G +       ++ +  +  I   
Sbjct: 1174 RHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECF 1233

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1234 LLHAKAHASGLNL-INATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLV 1287

Query: 173  QNTIDELVLQR--------LRTKSTIQDLLLNALKKETIHV 205
             ++++E +           +  K           + E + +
Sbjct: 1288 SDSVEECIYDISVSRRLAHIAQKRKQDG---EKFRGEDLEM 1325


>gi|326426459|gb|EGD72029.1| hypothetical protein PTSG_00045 [Salpingoeca sp. ATCC 50818]
          Length = 1978

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 16/153 (10%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR------- 92
                     + V     +  + +  +     +IV   F   L  +  A  +         
Sbjct: 1744 FELKMNTKAQHVLKRLREWQDELEPENKQLKVIVFSQFRDTLNIIGDAIIRTYGSQSVAE 1803

Query: 93   --TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +  +     +   +    +L         GL+L +  ++++        E   +  E 
Sbjct: 1804 YWSSYRVGELERFRTQAACKVLLLSTD-GAVGLDLHFVTHLVLMD------EIFDRAKEE 1856

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
              + R  + G  R+V V  LI + T++E + + 
Sbjct: 1857 QVIARAWRLGNDRSVVVEQLILRGTVEETLHEL 1889


>gi|302339016|ref|YP_003804222.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636201|gb|ADK81628.1| DNA methylase N-4/N-6 domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 837

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQ------KAFPQGRTLDKDPCTIQEWNEGK 108
           ++  +  II+    +  I+ +   ++   ++      +     +  ++       +++GK
Sbjct: 301 RVAKMREIIDADPDSHYIIWHDLEAERHAIKKALPESRWIYGSQKEEERAENAIGFSDGK 360

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L   P   G G N QY  +  +F  + +   +  Q + RI      +      V ++
Sbjct: 361 FKYLSTKPEISGSGANFQYHCHKAIFLGIGYKFNDFIQAVHRI-----YRFLQSEQVEIH 415

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +  ++  +  + + L  K      L++ +
Sbjct: 416 IIYTES--ERSIYETLMHKWEQHRRLVDMM 443


>gi|224077876|ref|XP_002305447.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222848411|gb|EEE85958.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 630

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             +  ++    +  N     + F    +CG G++L  G + ++   +  +          
Sbjct: 491 SSSDHREWSMERFNNSMDAKVFFGSIKACGEGISL-VGASRIIILDVHLNPSVTC----- 544

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + R  + G  + V+ Y L+A ++ +E        K  I  +
Sbjct: 545 QAIGRAFRPGQTKKVYAYRLVAADSPEEEDHTTCFRKEAIAKM 587


>gi|28603792|ref|NP_788839.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Bos taurus]
 gi|60390964|sp|Q9TTA5|SMAL1_BOVIN RecName: Full=SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A-like protein 1;
           AltName: Full=HepA-related protein; AltName:
           Full=Sucrose nonfermenting protein 2-like 1
 gi|6651385|gb|AAF22285.1|AF173643_1 DNA-dependent ATPase A [Bos taurus]
 gi|296490282|gb|DAA32395.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A-like protein 1 [Bos taurus]
          Length = 941

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-KDPCTIQEWNEGKIPLLFAHPAS 118
           E  +  A+   ++ A     +  R+Q     G T       +   ++  +         +
Sbjct: 723 EKFLVFAHHKVVLDAITKELERKRVQHIRIDGSTSSADRETSASSFSCPRALRGVLSITA 782

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL      +++VF  L+W+              R  + G   +V ++YL+A+ T D+
Sbjct: 783 ANMGLTF-SSADLVVFGELFWNPGVLM-----QAEDRVHRIGQLSSVSIHYLVARGTADD 836

Query: 179 LVLQRLRTKSTI 190
            +   ++ K  +
Sbjct: 837 YLWPLIQEKIKV 848


>gi|164660184|ref|XP_001731215.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
 gi|159105115|gb|EDP44001.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
          Length = 713

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 40/176 (22%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVH-------------------DEKIKALEVIIEKA 66
                   +L N     +     +                        K+  LE  +   
Sbjct: 534 LKAIGILKKLCNHPDLLNLPADLEGSEELYPEGYRPGDRRNVAVGLSGKLAVLERFLTSM 593

Query: 67  ---NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIP--L 111
                  I++  ++   L   ++                 ++K    +  +N  +    +
Sbjct: 594 RAKTDDKIVLISNYTQTLDLFERLCRSRRWGFFRLDGTMNINKRQNLVDRFNNPEGSEFI 653

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
                 + G GLNL  G N LV F   W+    Q       + R  + G K++   
Sbjct: 654 FLLSSKAGGCGLNL-IGANRLVLFDPDWNPASDQ-----QALARVWRDGQKKSCTY 703


>gi|255657327|ref|ZP_05402736.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-23m63]
          Length = 2995

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2441 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2500

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  I +NT D  + Q +  K      ++ +
Sbjct: 2501 RSGRIVR----QGNENNEVNIYRYITENTFDAYLWQTIENKQKFISQIMTS 2547


>gi|156054460|ref|XP_001593156.1| hypothetical protein SS1G_06078 [Sclerotinia sclerotiorum 1980]
 gi|154703858|gb|EDO03597.1| hypothetical protein SS1G_06078 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1270

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 11/138 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  + E    +  IV   F   L       +       ++DK        N+  I + 
Sbjct: 1045 RHILYLRESDPGSKSIVFSQFAEFLPILARAFRVFRIGHASIDKPNGIEIFKNDPNIEVF 1104

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GL L    + +       +        E   V R  + G      VY  I 
Sbjct: 1105 LLHSRAHSAGLTLVN-ASHVFICEPLLNTAL-----EIQAVARVDRIGQLVDTNVYLHII 1158

Query: 173  QNTIDELVLQRLRTKSTI 190
             NT+++ + + L  K  +
Sbjct: 1159 GNTVEQSIYE-LSVKRRL 1175


>gi|293476568|ref|ZP_06664976.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
 gi|291321021|gb|EFE60463.1| SNF2 family Superfamily II DNA/RNA helicase [Escherichia coli B088]
          Length = 963

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 19/174 (10%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
             +++++  Q     +  +  +             +                   +  + 
Sbjct: 427 IFTESMRTQQYLAHFLENNGYQGKVVTFSGTNNTPQANKIYQQW----------REEYQG 476

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                    +DK    I  + +    ++ A   +   G+NLQ+  ++L+ + L W+ +  
Sbjct: 477 SSRITGSAQIDKRSALIDHFKD-HAEIMIAT-EAAAEGVNLQF-CSLLINYDLPWNPQRI 533

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA-QNTIDELVLQRLRTKSTIQDLLLNA 197
           +Q I R       + G K  V V   +  +N  D+ VL+ L  K ++ D +  A
Sbjct: 534 EQRIGRC-----HRYGQKFDVVVINFLNQRNQADQRVLELLTEKFSLFDGVFGA 582


>gi|315222575|ref|ZP_07864464.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188261|gb|EFU21987.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 2924

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2372 FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2431

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2432 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2478


>gi|312793798|ref|YP_004026721.1| helicase domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180938|gb|ADQ41108.1| helicase domain protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 889

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +     +   +GKI L+     +   GLNLQ  G ++    L W+    +Q   RI
Sbjct: 730 YSKVERDEIKELVLDGKIRLMIGT-DAAAEGLNLQTLGTLIN-VDLPWNPIRLEQRQGRI 787

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL----KKETIHV 205
               Q        V+VY L  +++I++ +   L  +      ++ +L    K E + +
Sbjct: 788 RRIGQ----QFDKVYVYNLRYKDSIEDKIHAVLSGRIKATYDMIGSLPEIIKDEWMEI 841


>gi|295835438|ref|ZP_06822371.1| helicase [Streptomyces sp. SPB74]
 gi|295825492|gb|EDY43404.2| helicase [Streptomyces sp. SPB74]
          Length = 1741

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T +K     Q  N G I +L       G G N Q     L+     W      
Sbjct: 215 QFAQDNATPEKKAAMSQAANHGGIAVLMGSTEVLGTGFNGQNRAYALMHLDQDWTPASMI 274

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q   RI             V VY+L  + ++D   +  L +K+ 
Sbjct: 275 QRNGRIVRP----GNQHEEVNVYFLATKGSMDAWQVGLLTSKAE 314


>gi|203454739|ref|YP_002225055.1| gp176 [Mycobacterium phage Myrna]
 gi|197311787|gb|ACH62145.1| gp176 [Mycobacterium phage Myrna]
          Length = 618

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 18/171 (10%)

Query: 34  QLANGAVYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFN-------SDLARL 84
           Q+A  A    E  H  E H  KI  L  +++         +   H+        S   R+
Sbjct: 424 QIA--ADIMAEHPHLAEGHAPKIDLLNEMLDGIAEQYDQAVCFVHWTTGGLHLISPKLRV 481

Query: 85  QKAFPQGRTLDKD--PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           +     G    +      +  +      + F    +   GL+ Q     ++      D +
Sbjct: 482 RHVKHWGTGQSRRLSQKAVDTFKAQPNVVAFLSSDAGALGLSFQN-ARYVINIDPIRDYD 540

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              Q  +RI        G    V    +I +++++E +    + +  +   
Sbjct: 541 LLTQRNKRIDRADSYLEGLTSYV----MITEDSVEERIWHICQARMRLSAA 587


>gi|154483947|ref|ZP_02026395.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560]
 gi|149734989|gb|EDM50875.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC 27560]
          Length = 2219

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +     +E   GK  +L      CG G+N+Q     +      W     +Q
Sbjct: 1833 FIHDAKTDAQRDILFKEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHIDCPWKPSSIEQ 1892

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V VY  + + T D      +  K      ++ +
Sbjct: 1893 REGRGIR----QGNLNEEVAVYRYVTKETFDAYSWSLVENKQRFISQVMTS 1939


>gi|15611993|ref|NP_223645.1| hypothetical protein jhp0928 [Helicobacter pylori J99]
 gi|4155507|gb|AAD06506.1| putative [Helicobacter pylori J99]
          Length = 2231

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 1886 FIHDAKTEEQKQDLFKKLNRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 1945

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 1946 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2001


>gi|19115578|ref|NP_594666.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe
            972h-]
 gi|74698449|sp|Q9UTL9|YIV5_SCHPO RecName: Full=Uncharacterized ATP-dependent helicase C144.05
 gi|6138896|emb|CAB59685.1| ATP-dependent DNA helicase (predicted) [Schizosaccharomyces pombe]
          Length = 1375

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +   E  + +L  H  S   GL L      +       +       IE   ++R  + 
Sbjct: 1243 LKRFKEERSLQVLTLHARSQSSGLTLTN-ATHVFMCEPLLN-----SGIEMQAISRVHRI 1296

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            G  R  FVYY I ++T++  +L    TK    D L
Sbjct: 1297 GQTRPTFVYYYIVEDTVEGHILNLSLTKHEQLDKL 1331


>gi|294656835|ref|XP_459156.2| DEHA2D15488p [Debaryomyces hansenii CBS767]
 gi|199431779|emb|CAG87327.2| DEHA2D15488p [Debaryomyces hansenii]
          Length = 1346

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 42/124 (33%), Gaps = 9/124 (7%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
              L      +       +    + E++     +                    + F +  
Sbjct: 1088 EVLGIKYILYATFINPSQRTNNLAEFSNFPGGVTLIMDLRLASHGLTIISATRVYFINP- 1146

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                  Q+ IE   + R  + G  + V+V  L+ + T++E + +R     ++ +  ++  
Sbjct: 1147 ----VWQRSIEAQAIKRAHRIGQTKDVYVETLVLKGTLEEEIYRR----RSVDEESVDFG 1198

Query: 199  KKET 202
            +++T
Sbjct: 1199 REDT 1202


>gi|193210307|ref|NP_001024706.2| hypothetical protein F53H4.6 [Caenorhabditis elegans]
 gi|154147305|emb|CAD89731.2| C. elegans protein F53H4.6, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 933

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 61/197 (30%), Gaps = 29/197 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-----DEK 55
           +K Y +       ++QG   ++  +     K   + +    +       +         K
Sbjct: 485 LKIYKR-----SDEVQGILRQSSAACVGLKKLTDICDHPGIHKGVTPETKKFGSIEDSGK 539

Query: 56  IKALEVIIEK---ANAAPIIVAY----------HFNSDLARLQKAFPQGRTLDKDPCTIQ 102
           ++ +  +++       A +++            HF         +F + +        + 
Sbjct: 540 VRIVFQLLDMWLGTPGAKVVIFTQRRQVAVMLEHFMKQKRIAYCSFLKAKNAYDRENVVN 599

Query: 103 EW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
            + N   + +L A       G+ L    N ++ F   W+ +   +               
Sbjct: 600 YFENTTDVQILLAPSIMFKLGMQL-KKANKVIIFDPEWNPDSDVKH----TREMSFLTKK 654

Query: 162 KRAVFVYYLIAQNTIDE 178
              V V  L+++ T+++
Sbjct: 655 VEDVTVVRLVSEGTVED 671


>gi|282601441|ref|ZP_05981716.2| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
            15176]
 gi|282569100|gb|EFB74635.1| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
            15176]
          Length = 2002

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T  +      +   G + +L    A  G G N+Q     L    + W   + +
Sbjct: 1628 QFIHDANTEARKADLFAKVRSGTVRVLMGSTAKMGAGTNVQRKLIALHHLDVPWRPSDIE 1687

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q   R+      Q    + V +Y  + + T D    Q +  K      ++ +
Sbjct: 1688 QREGRMVR----QGNENKEVAIYRYVTEATFDAYSWQLIENKQRFIGQVMTS 1735


>gi|312877331|ref|ZP_07737297.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795894|gb|EFR12257.1| helicase domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 889

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +     +   +GKI L+     +   GLNLQ  G ++    L W+    +Q   RI
Sbjct: 730 YSKVERDEIKELVLDGKIRLMIGT-DAAAEGLNLQTLGTLIN-VDLPWNPIRLEQRQGRI 787

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL----KKETIHV 205
               Q        V+VY L  +++I++ +   L  +      ++ +L    K E + +
Sbjct: 788 RRIGQ----QFDKVYVYNLRYKDSIEDKIHAVLSGRIKATYDMIGSLPEIIKDEWMEI 841


>gi|164660106|ref|XP_001731176.1| hypothetical protein MGL_1359 [Malassezia globosa CBS 7966]
 gi|159105076|gb|EDP43962.1| hypothetical protein MGL_1359 [Malassezia globosa CBS 7966]
          Length = 1126

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 21/160 (13%)

Query: 39   AVYYDEEKHWKEVH---DEKIKALE-VIIEKANAAPIIVAYHFNSDLAR----------- 83
             +   +      VH     K+  +   II+      ++V    ++ L             
Sbjct: 891  PIVLPDGFDDVRVHTSTSTKLNMMLSEIIDAVQDEKVLVFSTLDNVLYELANALELLRIP 950

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                        ++       ++  I  L    +  G GL+L    + ++F    W  + 
Sbjct: 951  FLFYVSGMPQHLRNAYANMFMHKSNIRCLLMTTSVGGRGLDLH-CASRVIFAEPVWHWDL 1009

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
                 E   V R  + G  R V V   + ++T +E + +R
Sbjct: 1010 -----ESQAVKRAWRMGQTRRVLVSTYVMRHTFEERITER 1044


>gi|134080265|emb|CAK97168.1| unnamed protein product [Aspergillus niger]
          Length = 2138

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 15/143 (10%)

Query: 54   EKIKALEVIIEKAN-AAPIIVAYHFNS---------DLARLQKAFPQGRTLDKDPCTIQE 103
             K+  L  I+         ++   +           DLA+++                Q 
Sbjct: 1959 SKLDKLIEILNGIPSNERALIFIQYPELIEVASKALDLAKIKHTAILTTDRKSMQKIEQF 2018

Query: 104  WNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI--ERIGVTRQRQA 159
                 G+   L  +              N ++F S   + E            + R R+ 
Sbjct: 2019 QQTSFGEDKALILNLGGEMAAGLNLQSANHVIFLS-PMNAETQYDYESAMIQAIGRSRRY 2077

Query: 160  GFKRAVFVYYLIAQNTIDELVLQ 182
            G  R V VY+L+A+++ID  + Q
Sbjct: 2078 GQTRRVHVYHLLAKHSIDVNIFQ 2100


>gi|261201348|ref|XP_002627074.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
 gi|239592133|gb|EEQ74714.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis SLH14081]
          Length = 1503

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 21/161 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      LAR    F  G +       ++ +  +  I   
Sbjct: 1239 RHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECF 1298

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1299 LLHAKAHASGLNL-INATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLV 1352

Query: 173  QNTIDELVLQR--------LRTKSTIQDLLLNALKKETIHV 205
             ++++E +           +  K           + E + +
Sbjct: 1353 SDSVEECIYDISVSRRLAHIAQKRKQDG---EKFRGEDLEM 1390


>gi|218297348|ref|ZP_03497964.1| DEAD-like helicase [Thermus aquaticus Y51MC23]
 gi|218242337|gb|EED08881.1| DEAD-like helicase [Thermus aquaticus Y51MC23]
          Length = 680

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           ++  R           ++    ++   E    +L  HP     GL+L     ++ +    
Sbjct: 474 AEDFRPIVLRADTVRPEEREAWLKAQVEKGGDVLLCHPRVVQTGLDLVEFSTLIFY---- 529

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL----VLQRLRTKSTIQDLL 194
              E     + R    R  + G K  V V Y+  + T+ E     + Q+ R+   ++  L
Sbjct: 530 -QPEYSVYTL-RQAARRSWRIGQKEPVRVVYMAYRGTLQEAALVLIAQKARSSLALEGEL 587

Query: 195 LNA 197
           +  
Sbjct: 588 VEG 590


>gi|239611704|gb|EEQ88691.1| SNF2 family helicase/ATPase [Ajellomyces dermatitidis ER-3]
          Length = 1503

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 21/161 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + L  + +    A  IV   +      LAR    F  G +       ++ +  +  I   
Sbjct: 1239 RHLIWLRQHDPGAKSIVFSQYKPFLGILARAFSHFKIGFSSIDSHDGVERFKSDPSIECF 1298

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1299 LLHAKAHASGLNL-IDATHVFLCEPLINTA-----IELQAIARVHRIGQHRETTVWMYLV 1352

Query: 173  QNTIDELVLQR--------LRTKSTIQDLLLNALKKETIHV 205
             ++++E +           +  K           + E + +
Sbjct: 1353 SDSVEECIYDISVSRRLAHIAQKRKQDG---EKFRGEDLEM 1390


>gi|317013330|gb|ADU83938.1| adenine specific DNA methyltransferase [Helicobacter pylori
            Lithuania75]
          Length = 2866

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N GK+ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2360 FIHDAKTEEQKQDLFKKLNRGKVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2419

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2420 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2475


>gi|92116907|ref|YP_576636.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91799801|gb|ABE62176.1| helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 928

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +   E  I L+ A   +   GLNLQ  G ++    L W+    +Q I RI    
Sbjct: 749 EREQIKRAVKERTIRLIVAT-DAACEGLNLQTLGTLIN-VDLPWNPSRLEQRIGRIKRFG 806

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           QR+        +Y+  AQ T+DE V  +L ++  
Sbjct: 807 QRRDRVDMLNLLYHGSAQPTVDEKVYAKLSSRMK 840


>gi|145347265|ref|XP_001418094.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578322|gb|ABO96387.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1594

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 84   LQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             +     G++       ++ + N+    +L  +  +   GL+L    + +       ++ 
Sbjct: 1022 HESITRIGQSRYDREQALKNFKNDPDCAVLLLN-RAAAEGLDL-SFVSYVFLMEPLSNMS 1079

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT------KSTIQDLLLN 196
              QQ+I R       + G K  V V      NT +E++L           K ++    L+
Sbjct: 1080 LEQQVISR-----AHRMGQKDTVRVKVFAMANTAEEIMLDVQSELARNGTKMSLDS--LD 1132

Query: 197  ALKKETI 203
            A  +  +
Sbjct: 1133 ATTRHDV 1139


>gi|8778840|gb|AAF79839.1|AC026875_19 T6D22.14 [Arabidopsis thaliana]
          Length = 2254

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 30/194 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH------------- 76
             QL    +   E    +     K+  L+ ++     N    +V Y              
Sbjct: 769 LKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQQATQTPEGLLLGN 828

Query: 77  ----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
               F       +       +  K+        E +  +L     +C   + L    +  
Sbjct: 829 ILEDFVGQRFGPKSYEHGIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLLR-ADAF 887

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL--VLQRLRTKSTI 190
           + F    +     + +E+I +    +        ++ L +  T++E   +L R   +   
Sbjct: 888 ILFGSSLNPSHDVKHVEKIKIESCSER-----TKIFRLYSVCTVEEKALILARQNKR--- 939

Query: 191 QDLLLNALKKETIH 204
           Q+  +  L +   H
Sbjct: 940 QNKAVENLNRSLTH 953


>gi|114567522|ref|YP_754676.1| hypothetical protein Swol_2010 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338457|gb|ABI69305.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1144

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 73/210 (34%), Gaps = 26/210 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + Q E+   L+         A   + ++  +L N A+  ++ +   ++   K   ++  
Sbjct: 432 EEEQAEIIAQLEDIVASVDPVALQEEIIQLGRLINQALDLEKREAESKLIKLKDTLIQHG 491

Query: 63  IEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPC------TIQEWNE 106
           +       +++                D          G  +             +E+ E
Sbjct: 492 LFDDPKMKLLIFTEHKDTLTYLVGKLQDWGLTVTQIHGGMKIGDRDAPGTRIYAEREFRE 551

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++ A  A+   G+NLQ+    ++ + + W+    +Q + RI      + G  +   
Sbjct: 552 D-CQVMVATEAAG-EGINLQF-CWFMINYDIPWNPVRLEQRMGRI-----HRYGQGKDCL 603

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   ++ NT +  VL +L  +    +  L+
Sbjct: 604 ILNFVSTNTREGRVLNKLFERIHKIEDDLD 633


>gi|320321569|gb|EFW77678.1| helicase domain-containing protein [Pseudomonas syringae pv. glycinea
            str. B076]
          Length = 1592

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              +   +  T  +      E N G + +L       G G N+Q     L      W   +
Sbjct: 1200 QVRFIHEANTDLQKSKLFDEMNRGDVRVLLGSTTKMGAGTNVQRRLVALHHVDAPWRPSD 1259

Query: 144  HQQM---IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD-------- 192
             +Q    IER G     Q      + +     + T D  + Q +  K+   +        
Sbjct: 1260 LEQRDGRIERQGNMFYEQDPDGFEIEILRYATKQTYDSRMWQTIEYKAAGIEQFRKGDGL 1319

Query: 193  -LLLNALKKE 201
              +++ +  E
Sbjct: 1320 QRVIDDVASE 1329


>gi|114320694|ref|YP_742377.1| helicase domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227088|gb|ABI56887.1| helicase domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 963

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + +    ++ A   +   G+NLQ+  ++++ + L W+ +  +Q I R      
Sbjct: 492 RLALVEHFRD-NAKIMIAT-EAAAEGVNLQF-CSLVINYDLPWNPQRIEQRIGRC----- 543

Query: 157 RQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTKSTIQDLLLNA 197
            + G +  V V   + + N  D+ V + L  K ++ + L  A
Sbjct: 544 HRYGQQHDVIVVNFLNERNEADQRVHELLTEKFSLFNGLFGA 585


>gi|330933825|ref|XP_003304312.1| hypothetical protein PTT_16857 [Pyrenophora teres f. teres 0-1]
 gi|311319144|gb|EFQ87589.1| hypothetical protein PTT_16857 [Pyrenophora teres f. teres 0-1]
          Length = 605

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             ++  + +L     S G GLNL    ++++  +  W+     Q   R       + G  
Sbjct: 431 FLSDSIVDILLMTIRSGGVGLNL-PVASVVIHLTPCWNPALTVQCNSR-----AIRPGQL 484

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           + V V Y  + ++++ ++     +K+     +++
Sbjct: 485 KFVQVVYFHSTDSLERVIRDIANSKAVKASEVID 518


>gi|302554851|ref|ZP_07307193.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472469|gb|EFL35562.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 984

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  +  +         G+NLQ+  + +V + L W+   H Q   R+    Q++      V
Sbjct: 549 DPAVRRVLIATDCLSEGVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQKRDQ----V 604

Query: 166 FVYYLIAQN-TIDELVLQRLRTKSTIQDL 193
            V  +  ++  ID  VL+ L  K      
Sbjct: 605 RVITMYGEDNGIDGKVLEVLFKKHRQIKK 633


>gi|92109603|ref|YP_571890.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91802685|gb|ABE65058.1| helicase-like [Nitrobacter hamburgensis X14]
          Length = 1703

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 13/191 (6%)

Query: 16   QGENIEAFNSA-SKTVKCLQLANGA-VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV 73
              E     N+  +   +  Q          + + +++    ++   ++      A+    
Sbjct: 1260 DNEEGNKLNALIANAFRVWQETGHHTFRLKDGQPFEKPGAGQLIFSDLGTISVEASRGFS 1319

Query: 74   AYHF-NSDLARLQK------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
            AY +  ++L RL             +  +       ++N GK+ +L     + G G+N+Q
Sbjct: 1320 AYRWIRNELVRLGVPAPEIAYMQDHKKSEAKQRLFNDFNAGKVRILLGSSDTMGTGVNVQ 1379

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 L    + W   + +Q   RI      Q      V V+      ++D  + Q    
Sbjct: 1380 LRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDVFAYATLGSLDATMWQNNER 1435

Query: 187  KSTIQDLLLNA 197
            K+      L+ 
Sbjct: 1436 KARFIAAALSG 1446


>gi|146324153|ref|XP_753558.2| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|129558042|gb|EAL91520.2| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159126710|gb|EDP51826.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 1167

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 19/154 (12%)

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQEWNEGKI 109
              + +   A ++V   F   +        +                +D    +   + ++
Sbjct: 975  NWVREDPDAKVVVFTQFLDFVRIFSSICAKEGWAHCRLTGKMSVGARDLSMNEFREKQEV 1034

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
             ++ A   + G G+++    N  +   LWW+    Q         R  + G ++ V V  
Sbjct: 1035 KVMIASLMAGGTGIDM-SMANKCILVDLWWNEAVQQ-----QAFCRLYRIGQEKVVEVVK 1088

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLL--NALKKE 201
            +I QNTID+ +LQ    KS   +  +   AL+K 
Sbjct: 1089 IIVQNTIDDYILQLQTKKSVNINKAIGEEALQKR 1122


>gi|86609185|ref|YP_477947.1| SNF2 family helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557727|gb|ABD02684.1| helicase, Snf2 family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 903

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +   E  I  L     +   GLNLQ  G ++    L W+    +Q I RI    
Sbjct: 740 EREDIKRAVRERTIR-LVVATDAACEGLNLQTLGTLINI-DLPWNPSRLEQRIGRIKRFG 797

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNALKKETIH 204
           Q +      V +  L+   T DE V + L  +      +   L + ++ E I 
Sbjct: 798 QTRDR----VDMLNLVYHGTHDEKVYEVLSQRMKDRYDLFGSLPDTIEDEWIE 846


>gi|114567585|ref|YP_754739.1| hypothetical protein Swol_2075 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338520|gb|ABI69368.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 835

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 73/210 (34%), Gaps = 26/210 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSA--SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + Q E+   L+         A   + ++  +L N A+  ++ +   ++   K   ++  
Sbjct: 432 EEEQAEIIAQLEDIVASVDPVALQEEIIQLGRLINQALDLEKREAESKLIKLKDTLIQHG 491

Query: 63  IEKANAAPIIVAYHFN----------SDLARLQKAFPQGRTLDKDPC------TIQEWNE 106
           +       +++                D          G  +             +E+ E
Sbjct: 492 LFDDPKMKLLIFTEHKDTLTYLVGKLQDWGLTVTQIHGGMKIGDRDAPGTRIYAEREFRE 551

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++ A  A+   G+NLQ+    ++ + + W+    +Q + RI      + G  +   
Sbjct: 552 D-CQVMVATEAAG-EGINLQF-CWFMINYDIPWNPVRLEQRMGRI-----HRYGQGKDCL 603

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +   ++ NT +  VL +L  +    +  L+
Sbjct: 604 ILNFVSTNTREGRVLNKLFERIHKIEDDLD 633


>gi|308185126|ref|YP_003929259.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061046|gb|ADO02942.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 2834

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2328 FIHDAKTEEQKQDLFKKINRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2387

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2388 MEGRGVRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2443


>gi|289423818|ref|ZP_06425612.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289155755|gb|EFD04426.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2917

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2365 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2424

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2425 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2471


>gi|217032758|ref|ZP_03438241.1| hypothetical protein HPB128_26g4 [Helicobacter pylori B128]
 gi|298736002|ref|YP_003728527.1| hypothetical protein HPB8_506 [Helicobacter pylori B8]
 gi|216945521|gb|EEC24178.1| hypothetical protein HPB128_26g4 [Helicobacter pylori B128]
 gi|298355191|emb|CBI66063.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 2518

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2046 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2105

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2106 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2161


>gi|259484742|tpe|CBF81224.1| TPA: ATP-dependent DNA helicase (Eurofung) [Aspergillus nidulans FGSC
            A4]
          Length = 1415

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  + E    A  IV   +   L       ++      ++D+     +   +  I   
Sbjct: 1174 RHILWLREHDPGAQSIVFSQYKGFLDYLANAFRRFKIGYSSVDESDGIEKFKKDPGIECF 1233

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1234 LLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLI 1287

Query: 173  QNTIDELVLQR 183
             +T+++ +   
Sbjct: 1288 SDTVEKSIYDI 1298


>gi|118382598|ref|XP_001024455.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89306222|gb|EAS04210.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 413

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 6/191 (3%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  +EL   ++ + I+      + +K L++ +       +   KEV   +    +VII 
Sbjct: 156 KEESKELEAKIKQQVIQQVKDKKEKLKILKVLSPDNSSKLQIIVKEVKKVQQMKEKVIIY 215

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
               + +       +D                    I+ ++E             G    
Sbjct: 216 SQFLSFLTYLQKVLNDRDVRYTRLDGTMNKKDRATAIKTFSEQSEFTAILISLKAGAFGL 275

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                N +     W++      +               + V V   I +++I+E +LQ  
Sbjct: 276 NLVAANHVFICDPWYNPAIEVFLSANNI------IRQTKRVQVINFIMESSIEERILQCQ 329

Query: 185 RTKSTIQDLLL 195
           + K ++    L
Sbjct: 330 KKKRSLIQNTL 340


>gi|304399085|ref|ZP_07380953.1| SNF2-related protein [Pantoea sp. aB]
 gi|304353325|gb|EFM17704.1| SNF2-related protein [Pantoea sp. aB]
          Length = 2289

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 4    YHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEE-------KHWKEVHDEK 55
            Y      L   L  G+ I   +  S+  K  ++   A+   E+           +    K
Sbjct: 1362 YAALIENLKAGLPDGKQIIFMDEKSQHNKLRRIIASALGLAEQQIGIINATTVSKASGVK 1421

Query: 56   IKALEVIIEKANA----APIIVAYHFNSDLARLQKAF--PQGRTLDKDPCTIQEWNEGKI 109
            +K ++  +E                +  DLAR +         +L        ++NEG+ 
Sbjct: 1422 LKPVKKPVEPVEKADGSFKDGAWDKYYQDLARYEDYQAAMSDASLAGMEGIAADYNEGRT 1481

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            P++  +      G+NL  G       +L W      Q   R       +        V+Y
Sbjct: 1482 PIIICN-KKAEVGINLHKGTADSHHLTLPWTPASIDQRNGRGARVGSERDTM----RVHY 1536

Query: 170  LIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               + + DE  L+ L+ K    + ++ +
Sbjct: 1537 YCGKGSFDEFRLETLQRKKNWINDVMKS 1564


>gi|238614560|ref|XP_002398709.1| hypothetical protein MPER_00645 [Moniliophthora perniciosa FA553]
 gi|215475799|gb|EEB99639.1| hypothetical protein MPER_00645 [Moniliophthora perniciosa FA553]
          Length = 75

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +   +E   + R  + G  R V    L+ +++I+  ++Q    KS + D  L+
Sbjct: 3   IYSPKVEFQAMDRIHRLGQHRPVKAIKLVVEDSIESRIVQLQEKKSAMIDATLS 56


>gi|210134644|ref|YP_002301083.1| DNA methylase [Helicobacter pylori P12]
 gi|210132612|gb|ACJ07603.1| DNA methylase [Helicobacter pylori P12]
          Length = 2808

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2336 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2395

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2396 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2451


>gi|149199530|ref|ZP_01876564.1| putative ATP-dependent helicase [Lentisphaera araneosa HTCC2155]
 gi|149137326|gb|EDM25745.1| putative ATP-dependent helicase [Lentisphaera araneosa HTCC2155]
          Length = 956

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F  G+T  +    I ++   +  I +L     +   G+NL +  N +  + + W L   +
Sbjct: 489 FHGGQTDTEQQAIIDDFGKKDSDIRVLITS-DAGSQGVNLHFYCNRMFNYDIPWSLITLE 547

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-----LVLQRLRTKST 189
           Q   RI      + G  +  ++YY+IA++ +D       +++ L  K  
Sbjct: 548 QRNGRID-----RYGQSKTPYIYYMIAKSDLDGLKTDLHIIENLTKKEE 591


>gi|255941182|ref|XP_002561360.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585983|emb|CAP93720.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2162

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 26/177 (14%)

Query: 36   ANGAVYYDEE-------KHWKEVHDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA 87
             +G +   +           + +   K+  L  II        +I+    N  L     A
Sbjct: 1954 CSGHIVQSKIVPGEILVSEDQAIQSTKLDKLVEIIRNVPEDELVIIFVQINHLLPVASNA 2013

Query: 88   FPQGRTLDKDP-----CTIQEWNEGK------------IPLLFAHPASCGHGLNLQYGGN 130
                    +         I E+ +                 L  +  +           N
Sbjct: 2014 LKAANIDHRMVTQTNLKGIDEFKDSPKPKKGTIQPPSRPKALILNLGTSMAAGLNLQCAN 2073

Query: 131  ILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             ++F S ++    H         + R R+ G +R V+VY+L+ +NT D  + Q+ ++
Sbjct: 2074 HVIFLSPYFTTSHHDYDSGMTQAIGRARRFGQEREVYVYHLLVKNTYDVNIFQKAQS 2130


>gi|307694007|ref|ZP_07636244.1| SNF2-related protein [Ruminococcaceae bacterium D16]
          Length = 1314

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 937  FIHEANTEVRKKELFSKVRTGQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 996

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI             V VY  + + T D  + Q +  K      ++ +
Sbjct: 997  RKGRIERQGNSNPL----VHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 1043


>gi|211906285|gb|ACJ11660.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211906292|gb|ACJ11664.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 3   QFNARLHRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKDI 54


>gi|211906290|gb|ACJ11663.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 3   QFNARLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKDI 54


>gi|266625261|ref|ZP_06118196.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
 gi|288862841|gb|EFC95139.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
          Length = 634

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 529 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 588

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              RI      Q      V VY  + + T D  + Q +  K  
Sbjct: 589 RKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQK 627


>gi|317011733|gb|ADU85480.1| hypothetical protein HPSA_07665 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2330 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQARLVAMHELDCPWRPDELLQ 2389

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2390 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2445


>gi|121709908|ref|XP_001272570.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
 gi|119400720|gb|EAW11144.1| SNF2 family helicase/ATPase, putative [Aspergillus clavatus NRRL 1]
          Length = 1473

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK---AFPQGRTLDKDPCTIQEWN-EGKIPLL 112
            + +  + E    A  I+   + + L  L      F  G +       I+ +  +  I   
Sbjct: 1246 RHILWLREHDPGAKSIIFSQYKTFLEVLGTAFARFKIGYSSIDYADGIERFKSDPAIECF 1305

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            F H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 1306 FLHAKAQSSGLNLVN-ATHVFLCEPLVNTA-----IELQAIARVHRIGQHRPTTVWMYLV 1359

Query: 173  QNTIDELVLQR----------LRTKSTIQDL---LLNALKKETIH 204
             +T+++ +              + K+  Q     +++ L +  I 
Sbjct: 1360 SDTVEQSIYDLSVSRRLSHIFQKEKTEAQGAARPVIDDLTETAID 1404


>gi|328887631|emb|CAJ68736.2| putative DNA/RNA helicase Tn1549-like,CTn5-Orf21 [Clostridium
            difficile]
          Length = 2993

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2441 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2500

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2501 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2547


>gi|300814911|ref|ZP_07095142.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511001|gb|EFK38270.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2848

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2296 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2355

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2356 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2402


>gi|126699473|ref|YP_001088370.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile 630]
          Length = 3011

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2459 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2518

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2519 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2565


>gi|328854882|gb|EGG04012.1| hypothetical protein MELLADRAFT_89725 [Melampsora larici-populina
           98AG31]
          Length = 145

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 6/107 (5%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
           F +   R  +      T ++         +  +        + G GLN+    + +    
Sbjct: 3   FEASGIRFCQLHGNMSTFERTCQLNPFTKDPVVEAFVVLIEAGGVGLNMT-CADEVYLMD 61

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
             W+ +  Q       V      G  R V  ++++   +I++ +   
Sbjct: 62  AHWNPQVVQ-----QAVDHLHHIGQTRPVRAFHVVTGQSIEQHLYNV 103


>gi|317011160|gb|ADU84907.1| hypothetical protein HPSA_04625 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2330 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQARLVAMHELDCPWRPDELLQ 2389

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2390 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2445


>gi|254976974|ref|ZP_05273446.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255651892|ref|ZP_05398794.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260687151|ref|YP_003218285.1| putative helicase [Clostridium difficile R20291]
 gi|260213168|emb|CBE04620.1| putative helicase [Clostridium difficile R20291]
          Length = 2909

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2357 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 2416

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 2417 RAGRIVR----QGNENEKVNIYRYVTENTFDAYLWQTIENKQKFISQIMTS 2463


>gi|193297458|gb|ACF17793.1| putative helicase/DNA methylase [Helicobacter pylori]
          Length = 2609

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2094 FIHDAKTEEQKQDLFKKINRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2153

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2154 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2209


>gi|296391289|ref|ZP_06880764.1| putative DNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 84

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            A+ G G NL    N + F  L W   + +         R  + G  R V V   + + T
Sbjct: 1   TAAAGTGNNLTA-ANYVFFLGLPWTPGQQE-----QAEDRAYRNGQLRMVVVKIPLVEAT 54

Query: 176 IDELVLQRLRTKSTIQDLLLN 196
           IDE + Q L  K  +   L+ 
Sbjct: 55  IDEQLWQLLNAKRQVAQDLIE 75


>gi|25029457|ref|NP_739511.1| putative ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|259508359|ref|ZP_05751259.1| ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|23494746|dbj|BAC19711.1| putative ATP-dependent helicase [Corynebacterium efficiens YS-314]
 gi|259164029|gb|EEW48583.1| ATP-dependent helicase [Corynebacterium efficiens YS-314]
          Length = 941

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 1/111 (0%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              G   +K    + ++     PL +         G+NL    + LV + + W L   QQ
Sbjct: 474 MHGGLPDEKQMQLVDDFKRTDSPLRILVTGDVASEGVNLHTLCHHLVHYDIPWSLIRIQQ 533

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI    QR       + +    ++   +  VL RL  +    + LL  
Sbjct: 534 RNGRIDRYGQRNNPQITTLLLEPSDSEGIGEIKVLTRLMEREYEANKLLGD 584


>gi|225155638|ref|ZP_03724127.1| DNA or RNA helicase of superfamily II-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803611|gb|EEG21845.1| DNA or RNA helicase of superfamily II-like protein [Opitutaceae
           bacterium TAV2]
          Length = 541

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWK--EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA 82
           ++  K  Q+A G  Y   E   K   +   K   +  ++ KA      ++V   F+ +  
Sbjct: 346 AQRGKLSQIAKGFRYEGGESSRKVTPIKSLKPTVVGALVRKAAAEGRQVLVWCVFDEEAK 405

Query: 83  RLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
            + +                  K    ++++  GKI +L       G+GLN  +   ++ 
Sbjct: 406 IVGRHLKGVKGVAQLHGDTPEGKRERILEDFRHGKIRVLVGKAGMLGYGLNFPFVETMV- 464

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           F       E          V R  + G  + + V+       +++ + + +  K +  + 
Sbjct: 465 FSGYDDSFERFY-----QAVRRAYRYGATKRLTVHLPYIPG-LEDHIWENILRKKSQWEE 518


>gi|237741482|ref|ZP_04571963.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429130|gb|EEO39342.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 2036

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  +  +      +   G I +L       G G N+Q     L    + W   + +Q
Sbjct: 1677 FIHSANSEQQKDEMFAKVRSGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQ 1736

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + ++T D  + Q +  K      ++ +
Sbjct: 1737 RAGRIVR----QGNENEKVEVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1783


>gi|330948217|gb|EGH48477.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 98

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 91  GRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +  K    I     +    +     ++ G G NL    N + F  L W          
Sbjct: 19  SDSPKKRQKAIDAFQQDPDCRVFIGTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD---- 73

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNT 175
                R  + G  R V V   +A++T
Sbjct: 74  -QAEDRAYRNGQLRMVVVKIPLAEDT 98


>gi|303312199|ref|XP_003066111.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240105773|gb|EER23966.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 2149

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 99   CTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++ ++  G   +     + A       GLNLQ   +I+ F  L    +   +      +
Sbjct: 2007 KSLADFQNGTEEVKSKALILALGDVTASGLNLQAANHIVFFHPLIARSQYDYESGMSQAM 2066

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT----KSTIQDLLLNALKKET 202
             R R+ G ++ V +Y+ +A  T++  + +R R     K     + ++ LK E 
Sbjct: 2067 GRSRRYGQQKHVHIYHFLALKTVEVNIFERRRRECLVKRD--KIFVSLLKNEI 2117


>gi|224139698|ref|XP_002323233.1| hypothetical protein POPTRDRAFT_576142 [Populus trichocarpa]
 gi|222867863|gb|EEF04994.1| hypothetical protein POPTRDRAFT_576142 [Populus trichocarpa]
          Length = 97

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                 WW+  +     E   +    + G K  V +  LIAQN+I+E +L+    K    
Sbjct: 16  HSCLEPWWNSAD-----EEQAINCVHRYGQKENVRIVRLIAQNSIEERILEMQERKKLAS 70

Query: 192 DL 193
           + 
Sbjct: 71  EA 72


>gi|242210723|ref|XP_002471203.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729762|gb|EED83631.1| predicted protein [Postia placenta Mad-698-R]
          Length = 2759

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR-----TLDKDPCTIQEWNEGKIP 110
            ++ L  +      +  IV   +   L  L+               K+    +   +  I 
Sbjct: 1329 VRHLLYLELSDPGSKTIVFSAWADSLLMLKLWSGISCLRIDQHSGKENAAKRFRTDSSIS 1388

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L  H      GLN+    + +       +     Q I RI      + G  R   VY  
Sbjct: 1389 VLLLHGERENAGLNVT-CASRVFLVESVVNHAFELQAIARID-----RMGQLRPTEVYCY 1442

Query: 171  IAQNTIDELVLQRLRT 186
              ++T+++ +L     
Sbjct: 1443 YTEDTVEKSILDLAAK 1458


>gi|119479149|ref|XP_001259603.1| helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119407757|gb|EAW17706.1| helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 565

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D    +   + ++ ++ A   + G GL++    N  +   LWW+    Q         R
Sbjct: 385 RDSSMNEFREKREVKVMIASLMAGGTGLDM-SMANKCILVDLWWNEAVQQ-----QAFCR 438

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL--NALKKE 201
             + G ++ V V  +I QNTID+ +LQ    KS   +  +   AL+K 
Sbjct: 439 LYRIGQEKVVEVVKIIVQNTIDDYILQLQTKKSANINSTIGEEALQKR 486


>gi|53718402|ref|YP_107388.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           K96243]
 gi|52208816|emb|CAH34755.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           K96243]
          Length = 1060

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 23/126 (18%)

Query: 67  NAAPIIVAYHFNSDLAR--------------LQKAFPQGRTLDKDPCTIQEWN----EGK 108
           N   +I+   + +                         G   D        +     +  
Sbjct: 518 NGERVIIFTEYRATQKWLQGLLAFNGFTGEDRVMTMYGGMHSDDRERVKAAFQTSPEKSP 577

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +L A   S   G++LQ   + LV + + W+    +Q   RI    QRQ      V +Y
Sbjct: 578 VRILLAT-DSASEGIDLQNYCSRLVHYEIPWNPNRMEQRNGRIDRHGQRQPQ----VMIY 632

Query: 169 YLIAQN 174
           + + + 
Sbjct: 633 HFVGKG 638


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 21/190 (11%)

Query: 31   KCLQLA-NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA-PIIVAYHFNSDLARLQKAF 88
            +   +    A   D+       H  K+  +  +++       ++V   F   LA++    
Sbjct: 2181 RLHSVVPCAAFAADDGATVAAPHGAKLAQIVDLVKSLPGDERVLVFVQFADLLAKVDGVL 2240

Query: 89   PQGRTL--------DKDPCTIQEWNE-----GKIPLLFAHPAS-CGHGLNLQYGGNILVF 134
                           +    +  +           +L     +    G NL    + +  
Sbjct: 2241 NDSGIKTLKIKGSAHQMMNAMTAFQAETLAKDDPRVLLLELHNESASGANLTTANHAIFV 2300

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ--- 191
              L  D  +     E   + R R+ G KR V +Y  +A +T+D  + +    +  +    
Sbjct: 2301 HPLHVDKLQTYMACETQAIGRVRRYGQKRTVNLYRFLAADTVDSRLFE--SRRDELAPTP 2358

Query: 192  DLLLNALKKE 201
              + + L  E
Sbjct: 2359 QAMADDLAAE 2368


>gi|188527680|ref|YP_001910367.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
 gi|188143920|gb|ACD48337.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
          Length = 2803

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G + +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2331 FIHDAKTEEQKQDLFKKINRGGVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2390

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2391 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2446


>gi|257052779|ref|YP_003130612.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691542|gb|ACV11879.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 952

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +++ +    +L         G+NLQY  N ++ + L W+    +Q   R+    
Sbjct: 540 ERDERFEQFADADRGVLV-STDVISEGMNLQYAANQVIHYELPWNPNRLEQRNGRVDRYG 598

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q++      VF+  ++  + +D  VL +L  K+ 
Sbjct: 599 QKRDK----VFIRTMVVDDPMDRTVLTKLIKKAQ 628


>gi|317181593|dbj|BAJ59377.1| hypothetical protein HPF57_0303 [Helicobacter pylori F57]
          Length = 2818

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2346 FIHDAKTEEQKQDLFKKINRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 2405

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2406 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2461


>gi|253999373|ref|YP_003051436.1| DNA methylase N-4/N-6 domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986052|gb|ACT50909.1| DNA methylase N-4/N-6 domain protein [Methylovorus sp. SIP3-4]
          Length = 838

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 13/148 (8%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD------KDPCTIQEWNE 106
             +I     I+ +      IV +    +   +QKA P   ++       +    I E+++
Sbjct: 298 SARIAKAAEIVAQDPDDHFIVWHDLEDERHAIQKAIPNAVSVYGSQDLDEREKRIVEFSD 357

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L   P   G G N Q   +  +F  + +   +         + R ++      V 
Sbjct: 358 GKFSVLSTKPIIAGSGCNFQRHCHREIFAGIGFKFNDFI-----QAIYRVQRFQQTHQVR 412

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           +  + ++   +  VL  L+ K  +   +
Sbjct: 413 IDIIYSE--AEREVLASLKQKWELDKQM 438


>gi|66822083|ref|XP_644396.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|66823325|ref|XP_645017.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60472519|gb|EAL70471.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
 gi|60473216|gb|EAL71164.1| SNF2-related domain-containing protein [Dictyostelium discoideum AX4]
          Length = 1518

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 28   KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
              ++  ++        E      V       L+ I+   +  P         +L+R+ K 
Sbjct: 1254 LIMRLKEIV-------EIGEKCIVFSAFNDTLKDIVWTVSRIP---------ELSRVYKI 1297

Query: 88   FPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +    TL +    + ++   + +  ++  +     +GLN+    N ++F    W   + Q
Sbjct: 1298 YMTELTLKQRANIVSDFQTKDSEFNIIIMNSDLAAYGLNITA-ANHIIFVDPIWFASKEQ 1356

Query: 146  QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            Q I+R       + G  + VFV  LI +N+ ++
Sbjct: 1357 QSIKR-----SHRIGQTKPVFVEKLIIENSCEQ 1384


>gi|211906288|gb|ACJ11662.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 72

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
               R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 3   QFNARLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKDI 54


>gi|320593748|gb|EFX06157.1| DNA repair protein rad5 [Grosmannia clavigera kw1407]
          Length = 457

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 37/152 (24%), Gaps = 23/152 (15%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDK 96
               +  +    L  +         ++   +   L                F        
Sbjct: 283 DVVRLPSKVEALLLDLKSLPPNTKCLIFSAWRLTLDVIQKGLDQASIQSTRFDGEIPQKG 342

Query: 97  DPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER----- 150
               + ++ N+  I ++    +    G   Q       F S    L   Q    R     
Sbjct: 343 RQAVVDKFRNDQNISVMLLTLSCGAVG---QVVFCSPTFCSRMLTLCTLQSESNRRDPNP 399

Query: 151 ----IGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
                 + R  + G  + V      A+NT +E
Sbjct: 400 TLEEQALARIHRLGQTKEVTTVRFFARNTFEE 431


>gi|297718581|gb|ADI50196.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2934

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                   ++   +G+I +L       G GLN+Q     +V    
Sbjct: 2334 RGMKPEEIAFMHDYDNPKAKAKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLDP 2393

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             W   + +Q I RI      Q      V V  ++A+ + D ++ Q +  K
Sbjct: 2394 AWTAADMEQRIGRIIR----QGNVNETVSVVNMVARRSYDAMMYQYVARK 2439


>gi|197313568|ref|YP_002149612.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092610|emb|CAQ30352.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                   ++   +G+I +L       G GLN+Q     +V    
Sbjct: 2335 RGMKPEEIAFMHDYDNPKAKAKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLDP 2394

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             W   + +Q I RI      Q      V V  ++A+ + D ++ Q +  K
Sbjct: 2395 AWTAADMEQRIGRIIR----QGNVNETVSVVNMVARRSYDAMMYQYVARK 2440


>gi|197313499|ref|YP_002149544.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092541|emb|CAQ30280.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                   ++   +G+I +L       G GLN+Q     +V    
Sbjct: 2335 RGMKPEEIAFMHDYDNPKAKAKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLDP 2394

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             W   + +Q I RI      Q      V V  ++A+ + D ++ Q +  K
Sbjct: 2395 AWTAADMEQRIGRIIR----QGNVNETVSVVNMVARRSYDAMMYQYVARK 2440


>gi|10956643|ref|NP_066779.1| putative methylase [Rhodococcus equi]
 gi|31983873|ref|NP_858481.1| hypothetical protein pREAT701_27 [Rhodococcus equi]
 gi|10657890|gb|AAG21729.1| putative methylase [Rhodococcus equi]
 gi|10801081|dbj|BAB16635.1| Putative methylase (or helicase) [Rhodococcus equi]
          Length = 3229

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                                   ++   +G+I +L       G GLN+Q     +V    
Sbjct: 2615 RGMKPEEIAFMHDYDNPKAKAKLVEACADGRIRVLITSTKKGGTGLNVQRALKQMVNLDP 2674

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             W   + +Q I RI      Q      V V  ++A+ + D ++ Q +  K
Sbjct: 2675 AWTAADMEQRIGRIIR----QGNVNETVSVVNMVARRSYDAMMYQYVARK 2720


>gi|331243368|ref|XP_003334327.1| hypothetical protein PGTG_16196 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313317|gb|EFP89908.1| hypothetical protein PGTG_16196 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 55

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
                +E     R  + G K+ V V++ I   TI+E +L     K  + D
Sbjct: 4   HWNPTVEAQAFDRLHRIGQKKTVQVFHFITPKTIEEKILIVQNRKKQLTD 53


>gi|225027237|ref|ZP_03716429.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
 gi|224955437|gb|EEG36646.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
          Length = 2685

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++  L    +  G G N+Q     L    + W   + +Q
Sbjct: 2325 FIHDANTDVQKARLFSKVRSGQVRFLLGSTSKMGAGTNVQDRLIALHHLDVPWRPADIEQ 2384

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V ++  I +NT D    Q +  K      ++ +
Sbjct: 2385 QEGRILR----QGNKNKKVKIFRYITENTFDAYSWQLIENKQKFIGQIMTS 2431


>gi|258514692|ref|YP_003190914.1| helicase domain-containing protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778397|gb|ACV62291.1| helicase domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 945

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 96  KDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +    ++ + +   P+ L         G+NL +  + L+ F + W L   QQ   RI   
Sbjct: 486 EQQAVVESFGQENSPVRLLIASDVASEGINLHFLSHRLIHFDIPWSLMTFQQRNGRID-- 543

Query: 155 RQRQAGFKRAVFVYYLIAQNT-----IDELVLQRLRTK 187
              + G +    +YYL+ + +      D  +L+ L  K
Sbjct: 544 ---RYGQECTPEIYYLVTETSNPKIRGDVRILEVLIQK 578


>gi|255089038|ref|XP_002506441.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226521713|gb|ACO67699.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2616

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 15/148 (10%)

Query: 50   EVHDEKIKA-LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCT 100
             VH  K+   ++ I +      I+V   F   + ++     +             +    
Sbjct: 2460 GVHGTKMAHLVQRIKDTPADERILVFVQFPDLMKQIADVLQEANIKTLKLKGSVHQQTGA 2519

Query: 101  IQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            + E+ +  +       LL         G NL    + +    L    +   +  E   + 
Sbjct: 2520 LDEFQKEDLRKGDARVLLLLSRDESASGANLTTANHAIFVHPLLTTTQYEYEASETQAIG 2579

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            R R+ G  + V ++ +I +++ID  +++
Sbjct: 2580 RIRRYGQTKMVKIWRMIVRDSIDAEIIE 2607


>gi|320531413|ref|ZP_08032379.1| protein, SNF2 family [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136366|gb|EFW28348.1| protein, SNF2 family [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 996

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +  +    ++++ +   P+ +         G+NL    + L+ + + W L   +Q
Sbjct: 478 MHGSLSDVEQQEIVEQFRQAHTPVRVLVTGDVASEGVNLHAQCHELIHYDIPWSLIRIEQ 537

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI    Q  +     + +     + + D  VL RL  K       L  
Sbjct: 538 RNGRIDRYGQSVSPQITTLLLSPSDPRFSGDVRVLTRLMEKEDQAHRALGD 588


>gi|320040099|gb|EFW22033.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 2095

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 99   CTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++ ++  G   +     + A       GLNLQ   +I+ F  L    +   +      +
Sbjct: 1953 KSLADFQNGTEEVKSKALILALGDVTASGLNLQAANHIVFFHPLIARSQYDYESGMSQAM 2012

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             R R+ G ++ V +Y+ +A  T++  + +R R 
Sbjct: 2013 GRSRRYGQQKHVHIYHFLALKTVEVNIFERRRR 2045


>gi|167832513|gb|ACA01823.1| hypothetical protein VPI2_0006c [Vibrio cholerae]
          Length = 1041

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------HDEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +                  K+ +L   +
Sbjct: 771 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGKSGKLVSLLETL 827

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 828 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 887

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 888 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 942

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 943 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|320176448|gb|EFW51499.1| N-6 DNA methylase [Shigella dysenteriae CDC 74-1112]
          Length = 2280

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                 ++NEG+  ++  +      G+NL  G   +   +L W      Q   R       
Sbjct: 1464 EGIAADYNEGRTQIIICN-KKAEVGINLHIGTTDIHHLTLPWTPASIDQRNGRGARVGSP 1522

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            Q      V V+Y   + T D+  L  L+ K     +++ +   E 
Sbjct: 1523 Q----EKVNVHYYCGKGTFDDFRLDTLKRKKDWIKMVMTSDMSEI 1563


>gi|119193294|ref|XP_001247253.1| hypothetical protein CIMG_01024 [Coccidioides immitis RS]
          Length = 2097

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 99   CTIQEWNEGKIPL-----LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             ++ ++  G   +     + A       GLNLQ   +I+ F  L    +   +      +
Sbjct: 1955 KSLADFQNGTEEVKSKALILALGDVTASGLNLQAANHIVFFHPLIARSQYDYESGMSQAM 2014

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             R R+ G ++ V +Y+ +A  T++  + +R R 
Sbjct: 2015 GRSRRYGQQKHVHIYHFLALKTVEVNIFERRRR 2047


>gi|218132347|ref|ZP_03461151.1| hypothetical protein BACPEC_00206 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992685|gb|EEC58687.1| hypothetical protein BACPEC_00206 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +E   GK  +L      CG G+N+Q     +      W     +Q   R       Q   
Sbjct: 9   KEMRTGKKKVLIGSTDKCGTGVNVQTHLVAMHHVDCPWKPSSIEQREGRGIR----QGNE 64

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              V +Y  + + T D      +  K      ++ +
Sbjct: 65  NEEVAIYRYVTKGTFDAYNWSLVENKQRFISQVMTS 100


>gi|211997722|gb|ACJ14807.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHITQKALLDALKKDI 51


>gi|207108246|ref|ZP_03242408.1| hypothetical protein HpylH_00918 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 504

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 159 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 218

Query: 147 MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 219 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 274


>gi|110669157|ref|YP_658968.1| ATP-dependent helicase HepA [Haloquadratum walsbyi DSM 16790]
 gi|109626904|emb|CAJ53373.1| ATP-dependent helicase HepA [Haloquadratum walsbyi DSM 16790]
          Length = 959

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 53  DEKIKALEV--IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD----------PCT 100
           D K++ L    + ++   + +I+   +   L  L+    + +    D             
Sbjct: 486 DAKLQRLLDETLPQRFQYSRVIIFTKYVDTLEYLKDQIEESQGERTDVFTLHGSLNEAQR 545

Query: 101 IQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            + +NE  G    +         G+NLQ+  N ++ + L W+    +Q   RI    Q  
Sbjct: 546 KERFNEFEGSDRAVLIATDVISEGMNLQHAANQIIHYELPWNPNRLEQRNGRIDRYGQ-- 603

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +  V +  ++ ++ +D  +L+ L  K+     
Sbjct: 604 --EEDEVVIRTMVVEDQMDVAILKTLVKKADQIRR 636


>gi|211997714|gb|ACJ14802.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
 gi|211997717|gb|ACJ14804.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDLTVLEALENKHITQKALLDALKKDI 51


>gi|296805275|ref|XP_002843462.1| ATP-dependent DNA helicase [Arthroderma otae CBS 113480]
 gi|238844764|gb|EEQ34426.1| ATP-dependent DNA helicase [Arthroderma otae CBS 113480]
          Length = 1469

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 10/131 (7%)

Query: 57   KALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP-LL 112
            + L  + +    A  IV      F   L++    F  G +    P  I+ + E       
Sbjct: 1208 RHLLWLRQHDPGAKSIVFSQDKEFLGILSQAFYRFKIGYSSIDTPFGIERFKEDHTKECF 1267

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  +   V+  + 
Sbjct: 1268 LLHAKAHASGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHQDTTVWMYLV 1321

Query: 173  QNTIDELVLQR 183
             NT++E + Q 
Sbjct: 1322 ANTVEESIYQI 1332


>gi|312622196|ref|YP_004023809.1| helicase domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202663|gb|ADQ45990.1| helicase domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 888

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            +  +     +   +GKI L+     +   GLNLQ  G  L+   L W+    +Q   RI
Sbjct: 730 YSKVERDEIKELVLDGKIKLMIGT-DAAAEGLNLQTLG-ALINVDLPWNPIRLEQRQGRI 787

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL----KKETIHV 205
               Q        V+VY L  +++I++ +   L  +      ++ +L    K E + +
Sbjct: 788 KRIGQ----QFDKVYVYNLRYKDSIEDKIHAVLSGRIKATYDMIGSLPEIIKDEWMEI 841


>gi|331226118|ref|XP_003325729.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309304719|gb|EFP81310.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 76

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
               W+       +E   +    + G  + V VY      T++  + Q  R K  + 
Sbjct: 1   MEPSWNPA-----MEAQAIDCLYRLGQVKPVNVYRYYVHGTLETNIYQIQRRKGELA 52


>gi|327303100|ref|XP_003236242.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
 gi|326461584|gb|EGD87037.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
          Length = 2122

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 101  IQEWNEGK----IPLLFAHP-ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            I E+  GK      +L  +       GLNLQ   +I+ F  L    +          + R
Sbjct: 1986 ISEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVARSQYDYDSGMAQAIGR 2045

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+ G  + V +Y+++A  T++  + +  R K  +   
Sbjct: 2046 SRRYGQLKHVHIYHVLALKTVEVNIFE-QRKKQYLAKR 2082


>gi|18254358|gb|AAL66728.1|AF459401_1 putative helicase [Vibrio cholerae]
          Length = 507

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 134 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 190

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 191 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 250

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 251 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 305

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 306 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 342


>gi|225457289|ref|XP_002281382.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1252

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPL 111
           +       +I  A+   ++           +      G TL +D     +   +  ++ +
Sbjct: 530 DMKPRCLKMIIFAHHLKVLDGIQEFICKKGIGFVRIDGNTLARDRQSAVLSFRSSTEVKI 589

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GL+       +VF  L          I      R  + G   AV +Y   
Sbjct: 590 AIIGITAGGFGLDF-SSAQNVVFLELPQSPS-----IMLQAEDRAHRRGQTNAVNIYIFC 643

Query: 172 AQNTIDELVLQRLRT 186
           A++T+DE   Q L  
Sbjct: 644 AKDTMDESHWQNLNK 658


>gi|260497888|ref|ZP_05816007.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196554|gb|EEW94082.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 2036

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G I +L       G G N+Q     L    + W   + +Q
Sbjct: 1677 FIHSAGNEQQKDEMFAKVRSGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQ 1736

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + ++T D  + Q +  K      ++ +
Sbjct: 1737 RAGRIVR----QGNENEKVEVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1783


>gi|26348885|dbj|BAC38082.1| unnamed protein product [Mus musculus]
          Length = 891

 Score = 49.4 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 37/181 (20%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y     + +  L          N  +  ++  +  N     +  +             
Sbjct: 708 KYYRAILEKNFSFLTKGANQHNVPNLINTMMELRKCCNHPYLINGAEEKILEDFRKAHSS 767

Query: 53  -------------DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK- 96
                          K+  ++ ++ K  A    +++       L  L+    Q R   + 
Sbjct: 768 EASDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER 827

Query: 97  ---------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                        I  + +      +      + G G+NL    +  + F   W+ +   
Sbjct: 828 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTA-ADTCIIFDSDWNPQNDL 886

Query: 146 Q 146
           Q
Sbjct: 887 Q 887


>gi|229508136|ref|ZP_04397641.1| hypothetical protein VCF_003370 [Vibrio cholerae BX 330286]
 gi|229511625|ref|ZP_04401104.1| hypothetical protein VCE_003034 [Vibrio cholerae B33]
 gi|229518764|ref|ZP_04408207.1| hypothetical protein VCC_002789 [Vibrio cholerae RC9]
 gi|229343453|gb|EEO08428.1| hypothetical protein VCC_002789 [Vibrio cholerae RC9]
 gi|229351590|gb|EEO16531.1| hypothetical protein VCE_003034 [Vibrio cholerae B33]
 gi|229355641|gb|EEO20562.1| hypothetical protein VCF_003370 [Vibrio cholerae BX 330286]
          Length = 932

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 554 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 610

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 611 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 670

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 671 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 725

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 726 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 762


>gi|15641763|ref|NP_231395.1| helicase, putative [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|9656282|gb|AAF94909.1| helicase, putative [Vibrio cholerae O1 biovar El Tor str. N16961]
          Length = 940

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 562 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 618

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 619 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 678

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 679 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 733

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 734 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 770


>gi|313890685|ref|ZP_07824311.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313120933|gb|EFR44046.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1628

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 1076 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 1135

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V +Y  + +NT D  + Q +  K      ++ +
Sbjct: 1136 RAGRIVR----QGNENEKVNIYRYVTENTFDSYLWQTIENKQKFISQIMTS 1182


>gi|242762226|ref|XP_002340333.1| chromodomain-helicase-DNA-binding protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218723529|gb|EED22946.1| chromodomain-helicase-DNA-binding protein, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 203

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
               ++ A   + G GL++    N  +    WW+    Q     +      + G  RAV 
Sbjct: 88  PISKIMIAALKAGGTGLDITA-ANKCILVEPWWNYAVQQ-----LAFCLLFRIGQTRAVE 141

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +  L+A N +D+ +++  + K    +  +  
Sbjct: 142 IVKLVASNAVDDHMMELQKLKLRNFEGAIGD 172


>gi|145608510|ref|XP_370061.2| hypothetical protein MGG_12793 [Magnaporthe oryzae 70-15]
 gi|145015982|gb|EDK00472.1| hypothetical protein MGG_12793 [Magnaporthe oryzae 70-15]
          Length = 550

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 62/208 (29%), Gaps = 27/208 (12%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS------ASKTVKCLQLANGAVYYDEEK-HWKEVHDE 54
           +QY +  +E    ++ +  E              ++   + N   Y    K   ++   E
Sbjct: 339 EQYDRTVQETAEIIRQKTWERTGKGNHFGLFQAQLQLRLICNHGTYQVPLKLSRRDRRTE 398

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL-- 112
           +   L+ I   A+         F++  A                  +++ N         
Sbjct: 399 REAMLQAIGLGADTICSGCGAPFSAFEALSSTLCKHKFC----AECMEDNNAPCPLCHAR 454

Query: 113 --------FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
                     +       LNL    + +  F   W+       +E   + R ++ G  + 
Sbjct: 455 TRVDELDEVPNAGMGLPLLNLT-VASHIFIFEPQWNPS-----VESQAIGRAQRLGQDQQ 508

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQD 192
           VFV   +   T++  +  + + K  +  
Sbjct: 509 VFVTRYLVAGTVENRMHSQQKRKVELAK 536


>gi|145609289|ref|XP_367576.2| hypothetical protein MGG_07487 [Magnaporthe oryzae 70-15]
 gi|145016677|gb|EDK01107.1| hypothetical protein MGG_07487 [Magnaporthe oryzae 70-15]
          Length = 1514

 Score = 49.0 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 14/170 (8%)

Query: 31   KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL----ARLQK 86
            K  Q+            +    D  ++ +  +      A  I+   +        A   K
Sbjct: 1259 KLAQI---QSVELVHPSFTTKVDAIVRHILWLRLSEPGAKSIIFSQYTGFFGVLSAAFTK 1315

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++ +     +   E  I   F H  +   GLNL    N ++      +     Q
Sbjct: 1316 YQIGFSSIGEHNGIERFKQEAGIECFFLHARAQSSGLNLVN-ANHVILCEPLLNTALELQ 1374

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR-LRTKSTIQDLLL 195
             I R+      + G K+   V+  + + T++  +    ++ +    D ++
Sbjct: 1375 AIARVD-----RIGQKQDTTVWLYMVEGTVEPTIYNLSVQRRLEHMDRVM 1419


>gi|261195100|ref|XP_002623954.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587826|gb|EEQ70469.1| SNF2 family helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1894

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I ++  G    K  +L  H              N ++FF   +   ++         + R
Sbjct: 1764 IAQFQTGTEKVKSKVLILHLGDVSASGLNLQNANHVIFFHPLFAKSQYDYNSGMAQAIGR 1823

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ--RLRT--KST 189
             R+ G ++ V +Y+ +A  TI+  + +  R     K  
Sbjct: 1824 SRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLVKRD 1861


>gi|134288138|ref|YP_001110302.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134132788|gb|ABO60414.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 599

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
            ++LA  +     GR  +      +E + +G+  L      +      LQ    + VF  
Sbjct: 439 QAELADFRPVLITGRQTEDQKWIAKESFIKGESLLCIVALRAATGIDGLQSRARVAVFAE 498

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           L W        I +    R  + G +  V  YYL++   +D  +L+ L  K+     L+ 
Sbjct: 499 LDWSPA-----IHKQAEDRLHRDGQQNPVLCYYLVSDAGVDPDMLENLGAKAQQFIGLMG 553

Query: 197 A 197
            
Sbjct: 554 D 554


>gi|210612840|ref|ZP_03289493.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
 gi|210151393|gb|EEA82401.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
          Length = 997

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 66/202 (32%), Gaps = 18/202 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAF-NSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           +K++ K +R+ +   +    +A      + +  L++        E    +     K    
Sbjct: 753 IKEFDKIRRKYFVACKNARKDAMFRILQQLMLLLKICADPSLAYEYNSNEPPTKVKKAIH 812

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGK 108
            + + +     I V     ++                    +     +    ++E  + +
Sbjct: 813 LLQMWEKERVAIGVRKIEVAESYYHYLKQAFPKRPIFMITGKKNPCKQRQRIVEELRKTE 872

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L +   S    +N+    + ++   L ++    +Q   R      +         V 
Sbjct: 873 NGILLSTQQSLSESMNI-DDVDKIILPELHYNHAAMEQYYFRFIRYTSQNFKQ-----VV 926

Query: 169 YLIAQNTIDELVLQRLRTKSTI 190
           +LI +N+I+  +L+ +  K  I
Sbjct: 927 FLIYENSIEVNLLKMILAKEKI 948


>gi|195146790|ref|XP_002014367.1| GL18989 [Drosophila persimilis]
 gi|194106320|gb|EDW28363.1| GL18989 [Drosophila persimilis]
          Length = 168

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 27/101 (26%)

Query: 100 TIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            I+ +N     +  +      + G G+NL  G N ++     W+    QQ I R      
Sbjct: 1   MIKRFNSEVNKRARVFLISARAGGQGINL-IGANRVIILDTSWNPSNDQQNIFR------ 53

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                             T++E V  R  TK  +   +++ 
Sbjct: 54  -----------------GTMEEKVYSRSVTKQAMSFRVVDE 77


>gi|298528754|ref|ZP_07016158.1| helicase domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512406|gb|EFI36308.1| helicase domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 955

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            R  +    G +  +    ++++   + PL L         G+NL Y  + L+ F + W 
Sbjct: 479 DRHVERLHGGLSDIEQQRVVEDFGRDESPLRLLIASDVASEGINLHYLCHRLIHFDIPWS 538

Query: 141 LEEHQQMIERIGVTRQRQAG-------FKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           L   QQ   RI    Q +           R   ++        D  +L+ L +K  
Sbjct: 539 LMVFQQRNGRIDRYGQERTPLISYLAIQSREPKIH-------GDMRILELLISKDE 587


>gi|294785906|ref|ZP_06751194.1| helicase [Fusobacterium sp. 3_1_27]
 gi|294487620|gb|EFG34982.1| helicase [Fusobacterium sp. 3_1_27]
          Length = 2042

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G I +L       G G N+Q     L    + W   + +Q
Sbjct: 1683 FIHSAGNEQQKDEMFAKVRSGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQ 1742

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + ++T D  + Q +  K      ++ +
Sbjct: 1743 RAGRIVR----QGNENEKVEVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1789


>gi|297733908|emb|CBI15155.3| unnamed protein product [Vitis vinifera]
          Length = 1201

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPL 111
           +       +I  A+   ++           +      G TL +D     +   +  ++ +
Sbjct: 532 DMKPRCLKMIIFAHHLKVLDGIQEFICKKGIGFVRIDGNTLARDRQSAVLSFRSSTEVKI 591

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 + G GL+       +VF  L          I      R  + G   AV +Y   
Sbjct: 592 AIIGITAGGFGLDF-SSAQNVVFLELPQSPS-----IMLQAEDRAHRRGQTNAVNIYIFC 645

Query: 172 AQNTIDELVLQRLRT 186
           A++T+DE   Q L  
Sbjct: 646 AKDTMDESHWQNLNK 660


>gi|237745126|ref|ZP_04575607.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432355|gb|EEO42567.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 2042

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                     +      +   G I +L       G G N+Q     L    + W   + +Q
Sbjct: 1683 FIHSAGNEQQKDEMFAKVRSGDIRILLGSTQKMGAGTNVQTKLIALHDLDVPWRPSDLEQ 1742

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V VY  + ++T D  + Q +  K      ++ +
Sbjct: 1743 RAGRIVR----QGNENEKVEVYRYVTESTFDAYLWQTIENKQKFISQVMTS 1789


>gi|323454234|gb|EGB10104.1| hypothetical protein AURANDRAFT_15050 [Aureococcus anophagefferens]
          Length = 80

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     S G GLN+    N +VF   W++ + H          R  + G  + V V + 
Sbjct: 1   VLLMTVHSGGTGLNITR-ANHVVFLDRWFNPQVHF-----QAQARCHRIGQDKEVDVSFF 54

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL 195
            A  T+DE++ +  + K    D++L
Sbjct: 55  DATCTLDEVMAEINKLKEGNADVVL 79


>gi|317037762|ref|XP_001399104.2| SNF2 family helicase/ATPase [Aspergillus niger CBS 513.88]
          Length = 1156

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 11/149 (7%)

Query: 57   KALEVIIEKANAAPIIVAYHFNSDLARLQK----AFPQGRTLDKDPCTIQEWNEGKIPLL 112
            + +  + E    A  +V   + + L  L            ++D         ++  +   
Sbjct: 918  RHILWLREHDPGAKSVVFSQYKNFLEILANALSRFKIGFSSVDAKDGIQNFKSDPAVECF 977

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
              H  +   GLNL      +       +       IE   + R  + G  R   V+  + 
Sbjct: 978  LLHAKAHSSGLNLVN-ATHVFLCEPLINTA-----IELQAIARVHRIGQHRPTTVWMYLV 1031

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             +T+++ +     ++  +  ++    K+E
Sbjct: 1032 SDTVEQSIYDLSVSRR-LAHIVQKEKKQE 1059


>gi|242051685|ref|XP_002454988.1| hypothetical protein SORBIDRAFT_03g002565 [Sorghum bicolor]
 gi|241926963|gb|EES00108.1| hypothetical protein SORBIDRAFT_03g002565 [Sorghum bicolor]
          Length = 104

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 97  DPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++++N   ++ ++     +    LN+    ++L+ +  W          E   + R
Sbjct: 11  RHKAVKDFNMVPEVTIIIMSLKAASLSLNMVAACHVLMLYLWWNS------TTEDQAMDR 64

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + G    V V  L  ++T+++ +L     K
Sbjct: 65  AHRIGQTWVVMVSQLTIKDTLEDCILGLQEKK 96


>gi|211997720|gb|ACJ14806.1| putative phage-associated helicase [Candidatus Hamiltonella
           defensa]
          Length = 69

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           R  + G  R VF+++L+  ++ID  VL+ L  K   Q  LL+ALKK+ 
Sbjct: 4   RLHRQGQTRPVFIHHLVMNDSIDITVLEALENKHINQKALLDALKKDI 51


>gi|78190661|gb|ABB29652.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Suberites fuscus]
          Length = 439

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 51/177 (28%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-----------------VHDEKIKA 58
           Q +N    +         ++ N         H                     H  K++A
Sbjct: 263 QKKNKPVTHVFQALQYLRKVCNHPSLVVSPDHPMYSKVQDYLHQTSSTIRDIKHASKLQA 322

Query: 59  LEVIIEKA-------------------NAAPIIVAYHFNSDLARLQKAFPQGRTLD---- 95
           L+ ++                      +    ++   + S L  +++   +G        
Sbjct: 323 LKQLLHDCGIGVSGDGGVSSEGVGSAVSQHRALLFCQYKSMLDIIERDLFKGHMPSVTYL 382

Query: 96  ---------KDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                         +Q++N+   I +L       G GLNL  G + ++FF   W+  
Sbjct: 383 RLDGSVAAGNRHSVVQKFNDDPSIDVLLLTTHVGGLGLNLT-GADTVIFFEHDWNPM 438


>gi|307109751|gb|EFN57988.1| hypothetical protein CHLNCDRAFT_142147 [Chlorella variabilis]
          Length = 944

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +      + G G+ L  G + ++      +        E+  + R  + G  + + V  +
Sbjct: 826 VFLLTYRAGGAGITLTAGTH-IILCEPTLNPS-----FEKQAIGRSHRMGQTKPLTVTRM 879

Query: 171 IAQNTIDELVLQRLRT 186
           +   TI+E V + +  
Sbjct: 880 LMLGTIEEKVAEFVER 895


>gi|302838767|ref|XP_002950941.1| hypothetical protein VOLCADRAFT_104918 [Volvox carteri f.
            nagariensis]
 gi|300263636|gb|EFJ47835.1| hypothetical protein VOLCADRAFT_104918 [Volvox carteri f.
            nagariensis]
          Length = 1284

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 88   FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ- 145
             P   T  K    I  +    K  +      S   G+NL    N +       +    + 
Sbjct: 1087 HPCDMTQKKRTEAIDSFQRNPKTCVFLLSMRSGAVGINLTA-ANYVFLLEPCMNPAMEEH 1145

Query: 146  -------------QMIERIGVTRQRQAGFKRA---VFVYYLIAQNTIDELVLQRLRTKS 188
                         + I    + R  + G +R       +  ++  +++E V++ ++T+ 
Sbjct: 1146 GSHTATLKSARLPRHIVFRAIGRAWRMGQQRPVVVKRFFVKVSPGSVEERVMEVVKTRR 1204


>gi|239610686|gb|EEQ87673.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 1945

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I ++  G    K  +L  H              N ++FF   +   ++         + R
Sbjct: 1815 IAQFQTGTEKVKSKVLILHLGDVSASGLNLQNANHVIFFHPLFAKSQYDYNSGMAQAIGR 1874

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ--RLRT--KST 189
             R+ G ++ V +Y+ +A  TI+  + +  R     K  
Sbjct: 1875 SRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLVKRD 1912


>gi|194337018|ref|YP_002018812.1| SNF2-related protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309495|gb|ACF44195.1| SNF2-related protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 966

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T D     +  +       +     +   G+NLQ+  +++V + + W+ +  +Q I R
Sbjct: 486 SPTADMRQALVDYFRHEAT--IMIATEAAAEGINLQF-CSLVVNYDMPWNPQRIEQRIGR 542

Query: 151 IGVTRQRQAGFKRAVFVYYLI-AQNTIDELVLQRLRTKSTIQDLLLNA 197
                  + G +  V V   +   N  D  V Q L  K  +   +  A
Sbjct: 543 C-----HRYGQRFDVVVVNFLNMANEADNRVFQLLDQKFRLFSGVFGA 585


>gi|327348877|gb|EGE77734.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 2158

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I ++  G    K  +L  H              N ++FF   +   ++         + R
Sbjct: 2028 IAQFQTGTEKVKSKVLILHLGDVSASGLNLQNANHVIFFHPLFAKSQYDYNSGMAQAIGR 2087

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ--RLRT--KST 189
             R+ G ++ V +Y+ +A  TI+  + +  R     K  
Sbjct: 2088 SRRYGQQKHVHIYHFLALKTIEVNIFEQRRQERLVKRD 2125


>gi|311741611|ref|ZP_07715434.1| helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303275|gb|EFQ79355.1| helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1702

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             D  R++         +K      + N GK+ +L A+    G G N+Q  G  +    + 
Sbjct: 1212 MDKDRIRFIHDW---DNKRTQLFDDCNNGKVDVLIANTTKLGTGANIQSRGVAIHHVDVP 1268

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            W   + +Q   R       Q      V  Y  + + T D      +  K    +   NA 
Sbjct: 1269 WRPADLEQQDGRFFR----QGNQNDEVARYTYVGRGTYDGHSWATIERKGRFTNQFWNAD 1324

Query: 199  K 199
            +
Sbjct: 1325 R 1325


>gi|302797112|ref|XP_002980317.1| hypothetical protein SELMODRAFT_6818 [Selaginella moellendorffii]
 gi|300151933|gb|EFJ18577.1| hypothetical protein SELMODRAFT_6818 [Selaginella moellendorffii]
          Length = 89

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++        +GLNL      ++      +       +E   + R  + G +    V+  
Sbjct: 1   VMLLPTQHGANGLNL-IEAQHVILVEPLLNPA-----VEAQAINRVHRIGQRLKTLVHRF 54

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           I +NT++E + +  + K+ +
Sbjct: 55  IIRNTVEENIYKMSQQKTNL 74


>gi|225375025|ref|ZP_03752246.1| hypothetical protein ROSEINA2194_00648 [Roseburia inulinivorans DSM
            16841]
 gi|225213097|gb|EEG95451.1| hypothetical protein ROSEINA2194_00648 [Roseburia inulinivorans DSM
            16841]
          Length = 1472

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                         T  K      +   G++ +L    A  G G N+Q     L      W
Sbjct: 1082 MPPEQIAFIHDANTEVKKRELFAKVRSGQVRVLMGSTAKMGAGTNVQDRLVALHDLDCPW 1141

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               +  Q   RI      Q    + V V   + + T D  + Q +  K      ++ +
Sbjct: 1142 RPRDLTQRKGRIER----QGNQNKLVHVCRYVTEGTFDAYLWQTVENKQKFISQIMTS 1195


>gi|154795688|gb|ABS86814.1| putative helicase/DNA methyltransferase [Helicobacter cetorum]
          Length = 4043

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++ ++     +  N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 3520 FIHDAKSEEQKQDLFKRVNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 3579

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +      ++ +Y    + T D  + Q + TKS   +   NA K
Sbjct: 3580 MEGRGIRQGNLLHQADPENFSMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 3635


>gi|326522272|dbj|BAK07598.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 178

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L        +GLNL      ++      +        E   ++R  + G  ++ F+
Sbjct: 35  PVQVLLMLIQHGANGLNLLE-AQHVILLEPLLNPSA-----EAQAISRIHRVGQDKSTFI 88

Query: 168 YYLIAQNTIDELVLQR 183
           +  I + TI++ + + 
Sbjct: 89  HRFIVKKTIEDSIYKM 104


>gi|318043006|ref|ZP_07974962.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. CB0101]
          Length = 515

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           +   +    +  +  G+  LL A     G G  L      +V     W   + +      
Sbjct: 403 QPPHERQAIVDRFQAGEASLLIASFGVGGLGFTLHR-ARHVVLLERPWTPGDAE-----Q 456

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              R  + G +  +  ++L      D++V   + +K+   + LL+
Sbjct: 457 AEDRCHRIGMQGTLHCHWLQL-GVADQMVDDLIASKAARIEQLLS 500


>gi|121585835|ref|ZP_01675629.1| hypothetical protein VC274080_1814 [Vibrio cholerae 2740-80]
 gi|121727705|ref|ZP_01680800.1| hypothetical protein VCV52_1735 [Vibrio cholerae V52]
 gi|153819628|ref|ZP_01972295.1| hypothetical protein A5C_1794 [Vibrio cholerae NCTC 8457]
 gi|153821151|ref|ZP_01973818.1| hypothetical protein A5E_2062 [Vibrio cholerae B33]
 gi|227081906|ref|YP_002810457.1| putative helicase [Vibrio cholerae M66-2]
 gi|255744824|ref|ZP_05418774.1| helicase putative [Vibrio cholera CIRS 101]
 gi|262161893|ref|ZP_06030911.1| helicase putative [Vibrio cholerae INDRE 91/1]
 gi|262169761|ref|ZP_06037452.1| helicase putative [Vibrio cholerae RC27]
 gi|298498169|ref|ZP_07007976.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121549973|gb|EAX59991.1| hypothetical protein VC274080_1814 [Vibrio cholerae 2740-80]
 gi|121630002|gb|EAX62410.1| hypothetical protein VCV52_1735 [Vibrio cholerae V52]
 gi|126509832|gb|EAZ72426.1| hypothetical protein A5C_1794 [Vibrio cholerae NCTC 8457]
 gi|126521347|gb|EAZ78570.1| hypothetical protein A5E_2062 [Vibrio cholerae B33]
 gi|227009794|gb|ACP06006.1| putative helicase [Vibrio cholerae M66-2]
 gi|255737295|gb|EET92690.1| helicase putative [Vibrio cholera CIRS 101]
 gi|262021995|gb|EEY40705.1| helicase putative [Vibrio cholerae RC27]
 gi|262028625|gb|EEY47280.1| helicase putative [Vibrio cholerae INDRE 91/1]
 gi|297542502|gb|EFH78552.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 1149

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 771 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 827

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 828 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 887

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 888 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 942

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 943 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 979


>gi|240145260|ref|ZP_04743861.1| putative Helicase [Roseburia intestinalis L1-82]
 gi|257202614|gb|EEV00899.1| putative Helicase [Roseburia intestinalis L1-82]
          Length = 702

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +LF      G G N+Q     +      W   + +Q
Sbjct: 334 FIHEATTDAQKKELFGKVRSGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQ 393

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 394 RQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 440


>gi|71007686|ref|XP_758137.1| hypothetical protein UM01990.1 [Ustilago maydis 521]
 gi|46097419|gb|EAK82652.1| hypothetical protein UM01990.1 [Ustilago maydis 521]
          Length = 1751

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              ++  + ++  H  +   GLNL    + +       +  +         + R  + G  
Sbjct: 1524 FRSDPNVHVMLLHSEAQSSGLNLLA-ASHIHILEPLLNTSQEL-----QAIGRVHRIGQT 1577

Query: 163  RAVFVYYLIAQNTIDELVLQRLRTK 187
            +   ++    ++T++E +L     K
Sbjct: 1578 KETRIWCYYVKDTVEERILALSAYK 1602


>gi|302793320|ref|XP_002978425.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
 gi|300153774|gb|EFJ20411.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
          Length = 508

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 89  PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    +  +N    +  +  A   +C  G+ L  G + +V     W+  +   
Sbjct: 350 HGALVTEERHELMDRFNAEGSEARVCLASIRACAEGITL-VGASRVVLLHPVWNPAQT-- 406

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 ++R  + G KR VFVY L+ +  ++ +   R + K    + +  
Sbjct: 407 ---NQAISRAFRLGQKRKVFVYRLVTE--VERVKNSRTKWKDFCSEAIFE 451


>gi|254430801|ref|ZP_05044504.1| SWI/SNF family helicase_2 [Cyanobium sp. PCC 7001]
 gi|197625254|gb|EDY37813.1| SWI/SNF family helicase_2 [Cyanobium sp. PCC 7001]
          Length = 528

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 29/208 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           +   K +       +GE        +      Q+A+               D K+ A   
Sbjct: 327 RLQRKVEDYRRRAARGEVRRDAEVLAVLTALRQIAS---------------DYKLPAART 371

Query: 62  IIEK--ANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFA 114
           +I    A   P++V   F S  + L                +    +  +  G+ PLL A
Sbjct: 372 LISTLLARGEPVVVFTAFRSTASLLHAQLGGVLLTGALPPAQRQGLVDGFQAGRQPLLVA 431

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              + G G  L      +V     W   + +         R  + G    +  ++L    
Sbjct: 432 TFGTGGLGFTLHR-ARHVVLIERPWTPGDAE-----QAEDRCHRIGMGAPLCCHWLQL-G 484

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKET 202
             D+LV   + +K+    LLL   +++ 
Sbjct: 485 VADQLVDGLIASKAERIALLLQRGEQQL 512


>gi|195867544|ref|ZP_03079547.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195867982|ref|ZP_03079979.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660378|gb|EDX53638.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660788|gb|EDX54042.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
          Length = 2547

 Score = 49.0 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +  +G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRKGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|227484741|ref|ZP_03915057.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
 gi|227237263|gb|EEI87278.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
          Length = 2547

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|147675032|ref|YP_001217302.1| hypothetical protein VC0395_A1359 [Vibrio cholerae O395]
 gi|146316915|gb|ABQ21454.1| hypothetical protein VC0395_A1359 [Vibrio cholerae O395]
 gi|227013661|gb|ACP09871.1| putative helicase [Vibrio cholerae O395]
          Length = 1146

 Score = 48.6 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 768 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 824

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 825 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 884

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 885 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 939

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 940 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 976


>gi|302773700|ref|XP_002970267.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
 gi|300161783|gb|EFJ28397.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
          Length = 1029

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 89  PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 ++    +  +N    +  +  A   +C  G+ L  G + +V     W+  +   
Sbjct: 871 HGALVTEERHELMDRFNAEGSEARVCLASIRACAEGITL-VGASRVVLLHPVWNPAQT-- 927

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 ++R  + G KR VFVY L+ +
Sbjct: 928 ---NQAISRAFRLGQKRKVFVYRLVTE 951


>gi|291541420|emb|CBL14530.1| Helicase conserved C-terminal domain [Ruminococcus bromii L2-63]
          Length = 515

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +LF      G G N+Q     +      W   + +Q
Sbjct: 147 FIHEATTDAQKKELFGKVRSGEVRVLFGSTPKMGAGTNVQDRLIAIHNLDCPWRPSDLEQ 206

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V VY  + + T D  + Q + +K      ++ +
Sbjct: 207 RQGRIER----QGNMFPEVEVYRYVTEQTFDAYLYQLVESKQKFISQIMTS 253


>gi|254524909|ref|ZP_05136964.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219722500|gb|EED41025.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 759

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|254521296|ref|ZP_05133351.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219718887|gb|EED37412.1| Helicase conserved C-terminal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 771

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 649 RREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 702

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 703 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 752


>gi|163858602|ref|YP_001632900.1| hypothetical protein Bpet4284 [Bordetella petrii DSM 12804]
 gi|163262330|emb|CAP44633.1| conserved plasmid related protein [Bordetella petrii]
          Length = 644

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 522 RREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 575

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 576 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 625


>gi|160899595|ref|YP_001565177.1| helicase domain-containing protein [Delftia acidovorans SPH-1]
 gi|160365179|gb|ABX36792.1| helicase domain protein [Delftia acidovorans SPH-1]
          Length = 600

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 478 RREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 531

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 532 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 581


>gi|8132768|gb|AAF73380.1| MOM [Arabidopsis thaliana]
          Length = 2001

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 29/193 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH------------- 76
             QL    +   E    +     K+  L+ ++     N    +V Y              
Sbjct: 537 LKQLLTKNLELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQATQTPEGLLLGNI 596

Query: 77  ---FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              F       +       +  K+        E +  +L     +C   + L    +  +
Sbjct: 597 LEDFVGQRFGPKSYEHGIYSSKKNSAINNFNKESQCCVLLLETRACSQTIKLLR-ADAFI 655

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL--VLQRLRTKSTIQ 191
            F    +     + +E+I +    +        ++ L +  T++E   +L R   +   Q
Sbjct: 656 LFGSSLNPSHDVKHVEKIKIESCSER-----TKIFRLYSVCTVEEKALILARQNMR---Q 707

Query: 192 DLLLNALKKETIH 204
           +  +  L +   H
Sbjct: 708 NKAVENLNRSLTH 720


>gi|299471730|emb|CBN76951.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 708

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           +   R  + G K  V V+ L+  + ++E ++ R   K  +  L++ A K
Sbjct: 196 MTRDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGK 244



 Score = 34.7 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 3   QYHKFQREL---YCDLQGENIEAFNSASKT-VKCLQLANGAVYYDEEKHWKEVH----DE 54
            Y + Q          QG  + +    +   ++  ++ N    + +++   ++       
Sbjct: 112 LYKQIQESGAFGIAQEQGIGMASGKGLNNVFMQLRKVCNHPYLFFDDRWPSDLDLIRSSG 171

Query: 55  KIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFP 89
           K + L+ ++ K       I++      D A       
Sbjct: 172 KFELLDRMLPKLKAGGHRILMFTQMTRDRAHRIGQKH 208


>gi|297567701|ref|YP_003686672.1| hypothetical protein Mesil_3352 [Meiothermus silvanus DSM 9946]
 gi|296852150|gb|ADH65164.1| hypothetical protein Mesil_3352 [Meiothermus silvanus DSM 9946]
          Length = 919

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 53  DEKIKALEVIIEKA---NAAPIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDP 98
           D K++AL  +++         ++V   +   L            +         +  +  
Sbjct: 462 DSKLEALIELLKDPLRLGQGRVLVFTRYKDTLEHLLQSLPLALSQPVFGVHGEMSERERE 521

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             +  +++ K  +L A       GLNLQ+    LV + L W+    +Q   RI    Q +
Sbjct: 522 EVLLAFSQQKQAVLVATDVF-SEGLNLQHYAARLVHYDLPWNPNRLEQRNGRIDRFGQPE 580

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                 V +  L  Q + D  V + L  K+     
Sbjct: 581 P----TVRLRTLYYQRSFDVAVFKLLLEKAERIRQ 611


>gi|254848876|ref|ZP_05238226.1| helicase [Vibrio cholerae MO10]
 gi|254844581|gb|EET22995.1| helicase [Vibrio cholerae MO10]
          Length = 718

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 340 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 396

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 397 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 456

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 457 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 511

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 512 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 548


>gi|241589875|ref|YP_002979900.1| helicase domain protein [Ralstonia pickettii 12D]
 gi|240868587|gb|ACS66246.1| helicase domain protein [Ralstonia pickettii 12D]
          Length = 1055

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 24/208 (11%)

Query: 16   QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA--APIIV 73
            +G+        ++  K +++AN    + +          K +     +E+        I+
Sbjct: 815  EGKRNNLVTILARI-KAVEIANNFPQHPKATKGYAPLTSKQRFCIDKLEELVDLRRRPIM 873

Query: 74   AYHF--------NSDLARLQK--AFPQGRTLDKD-PCTIQEWNEGKIPLLFAHPASCGHG 122
               +             R         G+T+ +        + +G +P+      S G G
Sbjct: 874  FTGYPGNAELVARHLAKRHIDSVVIHGGKTIKRRNAEFEARFRKGTVPVALVTYGSIGEG 933

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             N+    + ++     W   +  Q I R              V V++ + +++ID  + Q
Sbjct: 934  TNIPQ-CSDVLLADKSWSARKESQAIARALRDE----NEWDEVKVHHALTEHSIDSYMQQ 988

Query: 183  RLRTKSTIQDLLLN-----ALKKETIHV 205
             +  K+   +   +        +E +H+
Sbjct: 989  VVSYKADSFNAGFDWGTPTTFNQEFLHM 1016


>gi|300813792|ref|ZP_07094099.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300512082|gb|EFK39275.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2547

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|94995094|ref|YP_603192.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
 gi|94548602|gb|ABF38648.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
          Length = 2547

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|313107526|ref|ZP_07793713.1| hypothetical protein PA39016_001010066 [Pseudomonas aeruginosa
           39016]
 gi|310880215|gb|EFQ38809.1| hypothetical protein PA39016_001010066 [Pseudomonas aeruginosa
           39016]
          Length = 759

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|163855369|ref|YP_001629667.1| hypothetical protein Bpet1064 [Bordetella petrii DSM 12804]
 gi|163259097|emb|CAP41396.1| conserved plasmid related protein [Bordetella petrii]
          Length = 770

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 648 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 701

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 702 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 751


>gi|154253841|ref|YP_001414665.1| helicase domain-containing protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157791|gb|ABS65008.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 759

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|94311266|ref|YP_584476.1| helicase-like protein [Cupriavidus metallidurans CH34]
 gi|218891399|ref|YP_002440266.1| hypothetical protein PLES_26731 [Pseudomonas aeruginosa LESB58]
 gi|254241417|ref|ZP_04934739.1| conserved hypothetical plasmid protein [Pseudomonas aeruginosa
           2192]
 gi|24461594|gb|AAN62165.1|AF440523_72 conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
 gi|93355118|gb|ABF09207.1| Putative plasmid-related DNA/RNA helicase [Cupriavidus
           metallidurans CH34]
 gi|126194795|gb|EAZ58858.1| conserved hypothetical plasmid protein [Pseudomonas aeruginosa
           2192]
 gi|218771625|emb|CAW27398.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 759

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|242222623|ref|XP_002477023.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723649|gb|EED77778.1| predicted protein [Postia placenta Mad-698-R]
          Length = 353

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                  +      +  +    + ++   +   + +L                 NIL+  
Sbjct: 143 QMYGIEYETLTGTMSGRRRAEALHKFMQSDAKGVRVLILSNVGAVGFNI--ACANILIII 200

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W  ++  Q+I R+   R       + V VY LIA+NT D  +      KS + +  +
Sbjct: 201 DTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDKSIMHNAFM 255

Query: 196 NALKK 200
            + + 
Sbjct: 256 GSSRA 260


>gi|313667221|ref|YP_004049622.1| helicase domain protein [Oceanithermus profundus DSM 14977]
 gi|313153852|gb|ADR37702.1| helicase domain protein [Oceanithermus profundus DSM 14977]
          Length = 695

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R +  +    +  K    IQ+     + +L  HP     GL+L     ++ +     + 
Sbjct: 479 FRARALYSSTASARKREAWIQKAVREGLDVLILHPRLVQTGLDLIDFPTLVYY---QVEP 535

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +     R    R  + G K  V V Y + + T+    L  L  K+     +
Sbjct: 536 SVYVL---RQAARRSWRIGQKHPVRVVYFVYRATLQTKALGLLAAKAQASHAI 585


>gi|87123312|ref|ZP_01079163.1| possible helicase [Synechococcus sp. RS9917]
 gi|86169032|gb|EAQ70288.1| possible helicase [Synechococcus sp. RS9917]
          Length = 522

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 32/199 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII- 63
             ++R +   L   + EA    +      Q+A                  K+ A E +I 
Sbjct: 327 DDYRRRVRAGLVRSDAEA---FALLTALRQIAAEF---------------KLPAAEQLIR 368

Query: 64  -EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPA 117
              A +  +++   F   L  LQ+         +         +  +  G I LL +   
Sbjct: 369 DCCAESGTVVLFSTFVEPLHLLQQRLGGAVLSGRLRPSERQAVVDRFQAGGIDLLLSTYG 428

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           + G G  L      ++     W               R  + G +  +  ++L      D
Sbjct: 429 TGGLGFTLHR-ARHIILLERPWTPGAVD-----QAEDRCHRIGMEGELISHWLQL-GVAD 481

Query: 178 ELVLQRLRTKSTIQDLLLN 196
           +LV   + +K+   ++LL 
Sbjct: 482 QLVDGLVASKAKQIEVLLG 500


>gi|297588629|ref|ZP_06947272.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
 gi|297574002|gb|EFH92723.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
          Length = 2556

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|325849331|ref|ZP_08170748.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480193|gb|EGC83262.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|18381045|gb|AAH22153.1| Ep400 protein [Mus musculus]
          Length = 1185

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I        S   G+NL    + +VF+    +      +++        + G  + + +
Sbjct: 1   RIFCALLSTHSRATGINL-VEADTVVFYDNDLNP-----VMDAKAQEWCDRIGRCKDIHI 54

Query: 168 YYLIAQNTIDELVLQ 182
           Y L++ N+I+E +L+
Sbjct: 55  YRLVSGNSIEEKLLK 69


>gi|302380800|ref|ZP_07269264.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311400|gb|EFK93417.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 2547

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|327479865|gb|AEA83175.1| Helicase conserved C-terminal domain protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 759

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLVTNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|313888230|ref|ZP_07821902.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845761|gb|EFR33150.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 2547

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|328871058|gb|EGG19429.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
          Length = 830

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 34/168 (20%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y     E       ++       S  +   +L N                 K+  +  
Sbjct: 521 KIYQ----ETINSFAEKDFS----LSNIILLKKLCNS------------KDSGKLLFVGD 560

Query: 62  IIEKAN-AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEG--K 108
           +I+       I++  ++   L   +    +              D     I ++N+   +
Sbjct: 561 LIKSLPRGEKIVLVSNYTQTLDIFETLCKELSFGFLRLDGQVEADSRQFLITKFNDPADQ 620

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +      + G G+NL  G N +V F   W+     Q +ER+    Q
Sbjct: 621 HKVFLLSAKAGGVGINL-IGANHIVLFDPDWNPAVDLQAMERVWRQGQ 667


>gi|282883052|ref|ZP_06291653.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297109|gb|EFA89604.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
          Length = 2539

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 1994 FIHEADTDKQKDELFSKVRRGEVRILLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2053

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2054 RSGRIVR----QGNENNKVNIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2100


>gi|325478350|gb|EGC81465.1| helicase C-terminal domain protein [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 2252

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|315123583|ref|YP_004065588.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018838|gb|ADT66930.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 1935

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1515 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1574

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1575 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1624


>gi|237708935|ref|ZP_04539416.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
 gi|229456997|gb|EEO62718.1| helicase domain-containing protein [Bacteroides sp. 9_1_42FAA]
          Length = 959

 Score = 48.6 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T +     I+E  +    +L         G+NLQ G N ++ + L W+    +Q   RI 
Sbjct: 523 TDEDRKMKIEELAKAPRHVLVCT-DCLSEGVNLQTGFNCVIHYDLPWNPNRMEQRNGRID 581

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT--IDELVLQRLRTKSTIQDLLLN 196
              Q     ++ V ++ L  ++T  +D+++++ L  K       L 
Sbjct: 582 RFGQT----EKEVAIFTLFDEDTNPVDKIIMKVLYRKQNQIRKSLG 623


>gi|255588846|ref|XP_002534737.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223524658|gb|EEF27647.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 1167

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 22/173 (12%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
                 K   + +D ++               I+A H              G   D+   
Sbjct: 430 WLTANLKTDGQWNDRRVILFTEYRTTHQWMHEILASH--DFGGDRLAILHGGMAQDEREK 487

Query: 100 TIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               +     +  + +L A   +   G++LQ   N L+   + ++    +Q   RI    
Sbjct: 488 VKAAFQTSPKDSAVRILLAT-DAASEGIDLQNHCNCLIHLEIPYNPNVMEQRNGRIDRHG 546

Query: 156 QRQAGFKRAVFVYYLI-----AQNTI----DELVLQRLRTKSTIQDLLLNALK 199
           QRQ    + V +++ +      ++TI    D+++  R   K       + ++ 
Sbjct: 547 QRQ----KEVLIWHPVDGGEQGKSTIGGHGDDII--RALRKLESMRADMGSVN 593


>gi|57505091|ref|ZP_00371038.1| helicase, Snf2 family [Campylobacter coli RM2228]
 gi|57019134|gb|EAL55847.1| helicase, Snf2 family [Campylobacter coli RM2228]
          Length = 1854

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1438 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1497

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1498 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1547


>gi|326479420|gb|EGE03430.1| cytosine-specific DNA methylase [Trichophyton equinum CBS 127.97]
          Length = 2106

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 2/158 (1%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
              +  +       +    K  A+  ++E A   P       ++ +              K
Sbjct: 1910 CHSERHTPTDKLAKYGGSKFTAVIELLEDAKRVPADDQALESARIPHTVIQPGDRTPTSK 1969

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
                       K  +L  +              N ++FF       ++         + R
Sbjct: 1970 TSEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVARSQYDYNSGMAQAIGR 2029

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+ G  + V +Y+++A  T++  + ++ R K  +   
Sbjct: 2030 SRRYGQLKHVHIYHVLALRTVEVNIFEK-RRKQYLAKR 2066


>gi|325846329|ref|ZP_08169319.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325481593|gb|EGC84632.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|256544755|ref|ZP_05472127.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399644|gb|EEU13249.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 2547

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDAYLWQTIENKQKFISQIMTS 2108


>gi|169824650|ref|YP_001692261.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
 gi|167831455|dbj|BAG08371.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
          Length = 2547

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 2108


>gi|255604124|ref|XP_002538172.1| ATP-dependent helicase, putative [Ricinus communis]
 gi|223513471|gb|EEF24211.1| ATP-dependent helicase, putative [Ricinus communis]
          Length = 319

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               G   +        +      L+     + G G+NLQ   N++V + L W+    +Q
Sbjct: 40  QIHGGIKREDRLHVQGLFRNDANTLVLLATDAAGEGVNLQN-ANLMVNYDLPWNPNRLEQ 98

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      + G      ++ ++A  T +  V QRL  K  ++   L  
Sbjct: 99  RFGRI-----HRIGQTEVCHLWNMVAAETREGDVFQRLFAKLEVERDALGG 144


>gi|78047942|ref|YP_364117.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|121593812|ref|YP_985708.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|78036372|emb|CAJ24063.1| putative helicase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|120605892|gb|ABM41632.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 759

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|237751872|ref|ZP_04582352.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
            BAA-430]
 gi|229376705|gb|EEO26796.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
            BAA-430]
          Length = 1935

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1515 FIHDAKTDLQKSQLFADMNTGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1574

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1575 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1624


>gi|255084481|ref|XP_002508815.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524092|gb|ACO70073.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1733

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            E     L        +GLNL      ++      D        E   + R  + G     
Sbjct: 1604 EPSPKALLMPLRRGANGLNLTE-AQHVILLEPVLDPGA-----EAQAMKRVDRIGQTMPT 1657

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQ 191
             V+  + Q T++E V +  R +    
Sbjct: 1658 CVHRFLLQGTVEENVQELSRRRREAA 1683


>gi|83318951|emb|CAJ38813.1| Lodestar protein [Platynereis dumerilii]
          Length = 1130

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 25/136 (18%)

Query: 52   HDEKIKALEVIIEKA-------NAAPIIVAYHFNSDLARLQKA----------FPQGRTL 94
               KI+ +   I++        N +  ++   +   L  ++                   
Sbjct: 1001 PSTKIQNILEKIKEIKKESPPGNPSKCVIVSQWTKMLDVIEYHLKSEGVQCCSIRGDMPP 1060

Query: 95   DKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             K    +  +N       ++     + G GLNL  GGN L+   L W+     Q  +RI 
Sbjct: 1061 KKRSEIVDLFNTPSSGPEVMLLSLRAGGVGLNL-IGGNHLIMVDLHWNPALEAQACDRI- 1118

Query: 153  VTRQRQAGFKRAVFVY 168
                 + G K+ VF++
Sbjct: 1119 ----YRVGQKKDVFIH 1130


>gi|291544389|emb|CBL17498.1| SNF2 family N-terminal domain [Ruminococcus sp. 18P13]
          Length = 790

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  K     ++   G + +L       G G N+Q            W   + +Q
Sbjct: 424 FIHEADTEAKKLELFKKVRRGDVRILMGSTQKMGAGTNVQNKLAASSDLDCPWRPSDLEQ 483

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            + R       Q      V +Y  + + T D  + Q +  K      ++ +
Sbjct: 484 RLGRSIR----QGNENAEVHIYRFVTEETFDAYLYQLVEGKQKFASQIMTS 530


>gi|237750669|ref|ZP_04581149.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373759|gb|EEO24150.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
          Length = 2282

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 3/118 (2%)

Query: 90   QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                  K     Q+ N G+I +L    +  G G N Q     +    L W     +Q   
Sbjct: 1376 HDFEGIKKETLSQKINSGEIRVLIGSTSKMGAGSNFQERLAAIHHLDLDWTPANMEQREG 1435

Query: 150  RIGV--TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN-ALKKETIH 204
            RI     R           +Y  + +   D L+LQ L  K+ I   + +  LK   I 
Sbjct: 1436 RIIRQGNRLMDLVPDFEARIYTYVTEQMSDSLMLQTLEQKTKIIKQIQDPNLKTRVIE 1493


>gi|170289581|ref|YP_001739819.1| helicase domain-containing protein [Thermotoga sp. RQ2]
 gi|222100561|ref|YP_002535129.1| Helicase domain protein [Thermotoga neapolitana DSM 4359]
 gi|170177084|gb|ACB10136.1| helicase domain protein [Thermotoga sp. RQ2]
 gi|221572951|gb|ACM23763.1| Helicase domain protein [Thermotoga neapolitana DSM 4359]
          Length = 1013

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 34/216 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCL--QLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y + + E   ++        NS +K       Q+ N      +       +D K+K L  
Sbjct: 343 YDEMELEENSEIDDLISSIINSVAKRYPLDKGQI-NALEKILKIGKAIGKNDSKLKTLAE 401

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAF--------------------PQGRTLDKDPC 99
           ++         +IV   F   L  L+                         G   ++   
Sbjct: 402 VLAYHLKKNEKVIVFTEFKDTLEYLRNNLPTLLEQEGIHLSEEKDISVLHGGMKSEEIEK 461

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++       L         GLNLQ   NIL+ + + W   + +Q + RI      + 
Sbjct: 462 QVEKFANDGK--LLISTDVASEGLNLQ-VANILINYEIPWSPIKLEQRVGRIW-----RL 513

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
              +    Y L+  +  D  +L+ L  K   I D +
Sbjct: 514 NQTKETIAYTLLLNHEADLQILESLYQKILNITDAV 549


>gi|51209527|ref|YP_063459.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121999261|ref|YP_001004014.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|39979705|gb|AAR29548.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87248838|gb|EAQ71802.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 48.6 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1516 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1575

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1576 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1625


>gi|229607712|ref|YP_002878360.1| hypothetical protein VCD_002624 [Vibrio cholerae MJ-1236]
 gi|229370367|gb|ACQ60790.1| hypothetical protein VCD_002624 [Vibrio cholerae MJ-1236]
          Length = 746

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 368 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETL 424

Query: 64  E--KANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           +  ++     I+                        S +    KA  + +++      I 
Sbjct: 425 DRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIS 484

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V    +W+  +     E     R  + G +
Sbjct: 485 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAK-----EAQATDRVYRIGQE 539

Query: 163 RAVFVYYLIAQN----TIDELVLQRLRTKSTIQDLLL 195
           + V +Y  +  +    + D  + + L  K+ ++D ++
Sbjct: 540 KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVV 576


>gi|155676733|dbj|BAF75717.1| hypothetical protein [Streptococcus thermophilus]
          Length = 349

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A     G GLN+Q     +    + W   +  Q   R+      Q    + V +Y+ 
Sbjct: 1   ILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNGRLIR----QGNMHQEVDIYHY 56

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNA 197
           I + + D  + Q    K      ++ +
Sbjct: 57  ITKGSFDNYLWQTQENKLKYITQIMTS 83


>gi|68164395|ref|YP_247529.1| hypothetical protein pTet_01 [Campylobacter jejuni subsp. jejuni
            81-176]
 gi|60617801|gb|AAX31282.1| pTet01 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1516 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1575

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1576 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1625


>gi|188991828|ref|YP_001903838.1| conserved hypothetical plasmid protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733588|emb|CAP51793.1| conserved hypothetical plasmid protein [Xanthomonas campestris pv.
           campestris]
          Length = 759

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKEPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|66768365|ref|YP_243127.1| plasmid-related protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|66573697|gb|AAY49107.1| plasmid-related protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 768

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 646 RREDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 699

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 700 SWRIGQKEPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 749


>gi|296270691|ref|YP_003653323.1| helicase domain-containing protein [Thermobispora bispora DSM
           43833]
 gi|296093478|gb|ADG89430.1| helicase domain protein [Thermobispora bispora DSM 43833]
          Length = 945

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I++  +     +         G+NLQ     ++ + L W+   H+Q   R+    Q
Sbjct: 510 RQQVIEDLGKESGRRVLVATDCLSEGVNLQELFQAVIHYDLAWNPTRHEQREGRVDRFGQ 569

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +    RAV +Y L   N ID +VL  L  K      
Sbjct: 570 -RKEIVRAVTLYGL--DNGIDGVVLDVLIRKHQTIAR 603


>gi|295829290|gb|ADG38314.1| AT2G46020-like protein [Neslia paniculata]
          Length = 201

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 41/158 (25%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
           +      + +      +L+     I ++N+      +      + G GLNLQ   + +V 
Sbjct: 11  YLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-ADTVVI 69

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--------------------- 173
           +    + +      E   V R  + G  R V V Y+ A                      
Sbjct: 70  YDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRTGGSVDL 124

Query: 174 -----------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                       +I+ L+     + K  + D ++NA +
Sbjct: 125 EDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 162


>gi|295829278|gb|ADG38308.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829280|gb|ADG38309.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829282|gb|ADG38310.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829284|gb|ADG38311.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829286|gb|ADG38312.1| AT2G46020-like protein [Capsella grandiflora]
 gi|295829288|gb|ADG38313.1| AT2G46020-like protein [Capsella grandiflora]
          Length = 201

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 41/158 (25%)

Query: 77  FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVF 134
           +      + +      +L+     I ++N+      +      + G GLNLQ   + +V 
Sbjct: 11  YLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQT-ADTVVI 69

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--------------------- 173
           +    + +      E   V R  + G  R V V Y+ A                      
Sbjct: 70  YDPDPNPKN-----EEQAVARAHRIGQTREVKVIYMEAVVEKISSHQKEDELRSGGSVDL 124

Query: 174 -----------NTIDELVL-QRLRTKSTIQDLLLNALK 199
                       +I+ L+     + K  + D ++NA +
Sbjct: 125 EDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 162


>gi|300726698|ref|ZP_07060130.1| helicase domain protein [Prevotella bryantii B14]
 gi|299776007|gb|EFI72585.1| helicase domain protein [Prevotella bryantii B14]
          Length = 901

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 91  GRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +  +    + ++   + KI +  +   S   G+NL Y  +I+  + + W L   +Q  
Sbjct: 432 SLSDTEQEDMVNDFAKEDSKIRVFISS-DSGSQGVNLHYFCHIMFNYDIPWSLITLEQRN 490

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTI-----DELVLQRLRTK-STIQDLLLNAL 198
            RI      + G K+   +YYL+A++       D  ++ +LR K   + D L +A+
Sbjct: 491 GRID-----RYGQKQTPVIYYLVAKSNRQDLKTDFRIIDKLRDKEQEVHDTLGDAM 541


>gi|269793671|ref|YP_003313126.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269095856|gb|ACZ20292.1| DNA/RNA helicase, superfamily II, SNF2 family [Sanguibacter
           keddieii DSM 10542]
          Length = 1028

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 15/119 (12%)

Query: 91  GRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++   T   +N       + +L A  A+   G++LQ   + LV F + ++    +Q
Sbjct: 535 SSPAEERELTRARFNADPSREPVRVLVATDAAG-EGIDLQAHCHRLVNFDVPFNPSRLEQ 593

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQ---NTI--DELVLQRLRTKSTIQDLLLNALKK 200
            I RI    Q QA       V+  + +    T   D   ++R+  K       L ++ +
Sbjct: 594 RIGRIDRYGQTQAPQ-----VFQFLPEKDSGTYGADMEFMRRIAEKVATVADDLGSVNQ 647


>gi|168698695|ref|ZP_02730972.1| putative helicase SNF2 family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 1047

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 86  KAFPQGRTLDKDPCTIQEWNE--GKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                G   ++       +       P+ L     +   GLNLQ     L+ + + W+  
Sbjct: 542 MTMYGGMDSEEREEVKAAFQSAPDISPVRLLLATDAAAEGLNLQNHCYRLIHYEIPWNPN 601

Query: 143 EHQQMIERIGVTRQRQA---GFKRAVFVYYLIAQN 174
             +Q   RI    Q+       +R VFVY+ + Q 
Sbjct: 602 RLEQRNGRIDRHGQKGFLADSGERQVFVYHFVGQG 636


>gi|291549550|emb|CBL25812.1| hypothetical protein RTO_11420 [Ruminococcus torques L2-14]
          Length = 756

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K      +   G++  +    A  G G N+Q     L    + W   + +Q
Sbjct: 362 FIHDANTEAKKTELFGKVKSGQVRFMIGSTAKMGAGTNVQDRLIALHHLDIGWKPSDLEQ 421

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q    + + ++  + ++T D  + Q +  K      ++ +
Sbjct: 422 REGRIIR----QGNHNKKIHIFRYVTESTFDSYMWQLIENKQKFISQIMTS 468


>gi|325914675|ref|ZP_08177016.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325539177|gb|EGD10832.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1048

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 21/213 (9%)

Query: 4    YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV-- 61
            Y + + +   +    ++      ++    L+  N   Y +E          K + L    
Sbjct: 803  YRRMKAD--AEQGRSSLNMVALLARISAVLKAGNQPSYKNEYFGSYMPMTSKERYLIERA 860

Query: 62   -----------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
                       +          +A   N           +     +      E+  G   
Sbjct: 861  SNLAAAGRKILLYVDGPEMSERIAAELNHRGVHAVPFHGKSSIKSRTRRMNSEFRYGPAS 920

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L A   +   GLNL Y  N ++     W+        ER  + R  +      V V ++
Sbjct: 921  VLVASYGTGQTGLNL-YQANYVLLAVRAWN-----SKTERQAIARTLRPQQTSEVHVEFV 974

Query: 171  IAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                ++DE   Q  + K   +   ++ L+ E +
Sbjct: 975  HLGGSLDEYQAQVCQWKQVSEFEAIDLLEPEEV 1007


>gi|261369092|ref|ZP_05981975.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
 gi|282568780|gb|EFB74315.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
          Length = 2744

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   GK+ +L       G G N+Q     L    + W   + +Q
Sbjct: 2124 FIHDANTDAKKATLFAKVRAGKVRILMGSTQKMGAGTNVQTKLIALHHLDVPWRPSDIEQ 2183

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q     +V +Y    + + D    Q +  K      ++ +
Sbjct: 2184 REGRILR----QGNENPSVQIYRYATEGSFDAYSWQLIENKQKFISQIMTS 2230


>gi|242207817|ref|XP_002469761.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731181|gb|EED85028.1| predicted protein [Postia placenta Mad-698-R]
          Length = 525

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                  +      +  +    ++++   +   + +L                 NIL+  
Sbjct: 379 QMYGIEYETLTGTMSGRQRAEALRKFMQSDAKGVRVLVLSNVGAVGFNI--ACANILIII 436

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W  ++  Q+I R+   R       + V VY LIA+NT D  +      KS + +  +
Sbjct: 437 DTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDKSIMHNAFM 491

Query: 196 NALKK 200
            + + 
Sbjct: 492 GSSRA 496


>gi|212695553|ref|ZP_03303681.1| hypothetical protein ANHYDRO_00070 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677431|gb|EEB37038.1| hypothetical protein ANHYDRO_00070 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 801

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 256 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 315

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V ++  + +NT D  + Q +  K      ++ +
Sbjct: 316 RSGRIVR----QGNENDKVNIFRYVTENTFDSYLWQTIENKQKFISQIMTS 362


>gi|315059225|gb|ADT73553.1| cpp14 [Campylobacter jejuni subsp. jejuni S3]
          Length = 1932

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1516 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1575

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1576 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1625


>gi|51209446|ref|YP_063409.1| cpp14 [Campylobacter coli]
 gi|39979654|gb|AAR29498.1| cpp14 [Campylobacter coli]
          Length = 1932

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1516 FIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1575

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1576 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1625


>gi|169600707|ref|XP_001793776.1| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
 gi|160705497|gb|EAT89929.2| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
          Length = 2117

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVF 134
            D   +     +G         I+++      + +  +L  +  S           N L+F
Sbjct: 1924 DSHGVAYHSLRGCRGATSAKIIEDFKTNDDPDDQSKVLILNMGSESAAGANLVNANHLIF 1983

Query: 135  FSLWWDLEEHQQMIE---RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             +    L + Q   +      + R R+    + V +Y++IAQ TID  +L+  R K 
Sbjct: 1984 VAP--LLAKTQYEYDSAMAQAIARLRRYMQTKTVHIYHVIAQRTIDVDILE-HRHKR 2037


>gi|77404497|ref|YP_345073.1| hypothetical protein pREC1_0012 [Rhodococcus erythropolis PR4]
 gi|77019878|dbj|BAE46253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 2936

 Score = 48.2 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                A          +       ++   +G+I +L       G GLN+Q     LV    
Sbjct: 2317 RGMKAEEIAFMHNHNSPKAKAKLMEACRDGRIRVLLTSTKKGGTGLNVQRALKQLVNLDP 2376

Query: 138  WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             W   + +Q I RI      Q      V V  ++A+ + D ++ Q +  K       +  
Sbjct: 2377 AWTAADMEQRIGRIIR----QGNTFDKVSVVNVVARRSYDAMMYQYVARK----SAFVAQ 2428

Query: 198  LKKETI 203
            L++E +
Sbjct: 2429 LRREDL 2434


>gi|296421314|ref|XP_002840210.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636424|emb|CAZ84401.1| unnamed protein product [Tuber melanosporum]
          Length = 1119

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I  ++      +A                  + +K    +         +     +    
Sbjct: 841 IFYESEDVAFYIAQGLEIIGVEYLGYQKNLPSHEKAKYLVTFQFSQTFRVFLMDLSQAAF 900

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLN+    + + F +        Q  +E   + R  + G KR V+   LI  +TI+  + 
Sbjct: 901 GLNI-SAASRIFFVNP-----VWQPSVEHQALARAHRIGQKRPVYAETLILNHTIEREMW 954

Query: 182 QRLR 185
            R +
Sbjct: 955 DRRQ 958


>gi|281358272|ref|ZP_06244755.1| type III restriction protein res subunit [Victivallis vadensis ATCC
            BAA-548]
 gi|281315362|gb|EFA99392.1| type III restriction protein res subunit [Victivallis vadensis ATCC
            BAA-548]
          Length = 1610

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  +        N G + ++       G G+N+Q    +       +   + +Q   R+ 
Sbjct: 1290 TDKQRQEVFDMVNSGDVRVIMGSTQKLGTGVNMQERLAVEHDLDAPFRPADAEQRTGRLV 1349

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 Q      V V       T+D  + Q L  K    +  L   ++    +
Sbjct: 1350 R----QGNILPEVEVIRYGMAETLDAGMYQILTRKQKFINDALKGKRRNMDEI 1398


>gi|121593689|ref|YP_985585.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120605769|gb|ABM41509.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 759

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVRVIYLGYSGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|329940571|ref|ZP_08289852.1| helicase SNF2 family protein [Streptomyces griseoaurantiacus M045]
 gi|329300632|gb|EGG44529.1| helicase SNF2 family protein [Streptomyces griseoaurantiacus M045]
          Length = 1067

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 91  GRTLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               ++       +    ++  + +L A  ++   G++LQ   + LV F + ++    +Q
Sbjct: 574 STPTEEREKIRARFTESPDKHPVRVLLATDSAG-EGIDLQTHCHRLVNFDIPFNPSRLEQ 632

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLI---AQNTIDELV--LQRLRTKSTIQ-------DLL 194
            I RI      + G  +   +++ +   +  T D  +  +  + TK           + +
Sbjct: 633 RIGRID-----RYGQTKHPEIFHFVPVSSSTTYDADMKFMGIIATKVGQATEDLGKVNQV 687

Query: 195 LNALKKE 201
           ++A  +E
Sbjct: 688 IDAEVQE 694


>gi|325093103|gb|EGC46413.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 2239

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+       +  +L  H              N ++FF   +   ++         + R
Sbjct: 2086 IAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYNSGMAQAIGR 2145

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+ G ++ V +Y+ +A  TI+  + +  R +  +   
Sbjct: 2146 SRRYGQQKHVHIYHFLALKTIEVNIFE-QRRRERLVKR 2182


>gi|317157659|ref|XP_001826363.2| C-5 cytosine-specific DNA methylase [Aspergillus oryzae RIB40]
          Length = 2165

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 54   EKIKALEVIIEKAN-AAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
             K+  +  II+       I++   F         +      K      T  +    +Q +
Sbjct: 1982 SKLDKMIEIIQAVPTGDRILLFIQFPELIDVTSKALELAKIKYIAIIATDRRAAQKVQHF 2041

Query: 105  NE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQA 159
             E    G+  +L  +  S           N ++F S  +   ++         + R R+ 
Sbjct: 2042 QEAGGFGENKVLILNLGSEMAAGLNLQCANHVIFLSPMFAQTQYDYDSSMTQAIGRARRY 2101

Query: 160  GFKRAVFVYYLIAQNTID 177
            G  + V++Y+L+A+ TID
Sbjct: 2102 GQTKHVYIYHLLARMTID 2119


>gi|157118619|ref|XP_001659181.1| snf2 histone linker phd ring helicase [Aedes aegypti]
 gi|108883243|gb|EAT47468.1| snf2 histone linker phd ring helicase [Aedes aegypti]
          Length = 1114

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-----CTIQEWNE--GK 108
            ++ +  +  +     II+  H++  L  L +A  Q     +         ++E+ +   +
Sbjct: 953  VETILQLKHQEPQVKIIIFSHWDPILTMLARALDQNDITYRAKTSKFYKGVEEFKDYSKE 1012

Query: 109  IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            +  +         GLNL      +       +        E   V R  + G  +  FV+
Sbjct: 1013 LTCMLLPLKYGSKGLNLTE-ATHVFLVEPILNPG-----EELQAVGRVHRIGQTKPTFVH 1066

Query: 169  YLIAQNTIDELVLQRLRT 186
              I Q TI+E + + ++ 
Sbjct: 1067 RFIVQQTIEETIHRTIQN 1084


>gi|156044490|ref|XP_001588801.1| hypothetical protein SS1G_10348 [Sclerotinia sclerotiorum 1980]
 gi|154694737|gb|EDN94475.1| hypothetical protein SS1G_10348 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 98

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               N +      W+      ++E   + R ++ G  R V ++  I ++T+++ +  R  
Sbjct: 26  LTISNYVYILEPQWNP-----IVESQAIARVQRIGQNRNVKIFRYIVEDTVEKGIQNRQS 80

Query: 186 TKSTIQDL 193
            K     +
Sbjct: 81  RKLNFAKM 88


>gi|303274797|ref|XP_003056713.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461065|gb|EEH58358.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 81

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  + +L  H  +   GL L    ++++    +    +     E     R  + G  R V
Sbjct: 1   DPDVKVLLLHAGTAAAGLTLTQ-ADLVILLEPFLSPGD-----EAQAANRVHRIGQTRPV 54

Query: 166 FVYYLIAQNTIDELVLQ 182
                   +T++E +L 
Sbjct: 55  RCVTYYVSDTVEERLLA 71


>gi|222778489|ref|YP_002576126.1| DNA methylase/helicase [Campylobacter lari RM2100]
 gi|222539774|gb|ACM64874.1| DNA methylase/helicase [Campylobacter lari RM2100]
          Length = 1934

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N GK  +L       G G N+Q     L      W   + +Q
Sbjct: 1514 FIHDAKTDLQKGQLFSDMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQ 1573

Query: 147  MIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               R+         +      V  +    + T D  + Q + +K+   + 
Sbjct: 1574 RSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQ 1623


>gi|254582851|ref|XP_002499157.1| ZYRO0E05192p [Zygosaccharomyces rouxii]
 gi|238942731|emb|CAR30902.1| ZYRO0E05192p [Zygosaccharomyces rouxii]
          Length = 1520

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 61/203 (30%), Gaps = 26/203 (12%)

Query: 5    HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +  + +  +  G  I+        +K            E +  +E   + +   +    
Sbjct: 1305 EEVHKMVIKESFGAKIDFVIKLILFLKLK---------SESESDQEDPPQILMYSQSFEF 1355

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                + ++  Y                          +      I  L  +  S G GLN
Sbjct: 1356 LKVISKVLNIYEIKHLSCWANVTNVG-------EAISKFKRNTSITCLLLNVKSLGAGLN 1408

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-- 182
            L      +       +     +  E   ++R  + G  +  +V+  + +N+++E + +  
Sbjct: 1409 LLN-ARHVFLLDPIIN-----RGDELQAMSRNNRIGQTKETYVWNFMIKNSVEENIFKYK 1462

Query: 183  -RLRTKSTIQDLLLNALKKETIH 204
              L  +  +    L  +K+E + 
Sbjct: 1463 CVLEGRRRLLGEKLK-VKQENLD 1484


>gi|242226668|ref|XP_002477623.1| predicted protein [Postia placenta Mad-698-R]
 gi|220722552|gb|EED77178.1| predicted protein [Postia placenta Mad-698-R]
          Length = 620

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                  +      +  +    +  +   +   + +L                 NIL+  
Sbjct: 362 QMYGIEYETLTGTMSGRRRAEALHNFMQSDAKGVRVLVLSNVGAVGFNI--ACANILIII 419

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W  ++  Q+I R+   R       + V VY LIA+NT D  +      KS + +  +
Sbjct: 420 DTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDKSIMHNAFM 474

Query: 196 NALKK 200
            + + 
Sbjct: 475 GSSRA 479


>gi|238493629|ref|XP_002378051.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220696545|gb|EED52887.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 2055

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 54   EKIKALEVIIEKAN-AAPIIVAYHF--------NSDLARLQKAFPQGRTLDKDPCTIQEW 104
             K+  +  II+       I++   F         +      K      T  +    +Q +
Sbjct: 1872 SKLDKMIEIIQAVPTGDRILLFIQFPELIDVASKALELAKIKYIAIIATDRRAAQKVQHF 1931

Query: 105  NE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQA 159
             E    G+  +L  +  S           N ++F S  +   ++         + R R+ 
Sbjct: 1932 QEAGGFGENKVLILNLGSEMAAGLNLQCANHVIFLSPMFAQTQYDYDSSMTQAIGRARRY 1991

Query: 160  GFKRAVFVYYLIAQNTID 177
            G  + V++Y+L+A+ TID
Sbjct: 1992 GQTKHVYIYHLLARMTID 2009


>gi|121608160|ref|YP_995967.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121552800|gb|ABM56949.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 1031

 Score = 48.2 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 57/155 (36%), Gaps = 31/155 (20%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN----EG 107
           + N   +I+   + +    +Q+                 G   ++       +     + 
Sbjct: 516 EWNDRRVILFTEYRTTHQWMQQILASHGFGSERLGLLHGGLPQEEREPIKAAFQASPQDS 575

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L A   +   G++LQ   N+L+   + ++    +Q   RI    QR    ++ V +
Sbjct: 576 PVRILLAT-DAASEGIDLQNHCNLLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLI 630

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++ +      E +L+ LR         L++++ + 
Sbjct: 631 WHPV-DGGHGEDILRALRK--------LDSMRADM 656


>gi|325272684|ref|ZP_08139038.1| helicase domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324102195|gb|EGB99687.1| helicase domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 1671

 Score = 48.2 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      E N G++ ++    A  G G+N+Q     L      W   + +Q
Sbjct: 1282 YIHEANTDLQKAKLFAEMNAGEVRIILGSTAKMGAGMNVQRRLVALHHLDAPWRPSDLEQ 1341

Query: 147  M---IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR---------TKSTIQDLL 194
                IER G            + +     + T D  + Q +           K      +
Sbjct: 1342 RDGRIERQGNLFYEMDPDGFEIEILRYATKQTYDSRMWQTIEFKAAGIEQFRKGDSLQRV 1401

Query: 195  LNALKKE 201
            +  +  E
Sbjct: 1402 IEDVASE 1408


>gi|239612021|gb|EEQ89008.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 433

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R   +R  +   +R V    ++ QN+ID+ +      K+   + ++ +
Sbjct: 226 PWSNRHAFSRIFRIRQQRNVEFVRIVVQNSIDDRIQLIQNEKTDGIEQVIGS 277


>gi|206600246|ref|YP_002241852.1| gp65 [Mycobacterium phage Ramsey]
 gi|206287334|gb|ACI12677.1| gp65 [Mycobacterium phage Ramsey]
          Length = 446

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 D+    +  + +G+  +L   P+    GLN Q+  + + F  +    E++    
Sbjct: 335 HGSLDPDEKAQLLLGFADGQFEVLVTKPSIASQGLNYQH-CHRMAFVGMGDSYEQYY--- 390

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               + R  + G  + V+ + ++++  ++  +   +  K      +  AL +E   V
Sbjct: 391 --QAIRRCYRYGQTKVVYAHVIVSE--LESQIAANVARKEQQAGDITRALVEEMRRV 443


>gi|326777771|ref|ZP_08237036.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
 gi|326658104|gb|EGE42950.1| SNF2-related protein [Streptomyces cf. griseus XylebKG-1]
          Length = 973

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +     +         G+NLQ+  + +V + L W+   H Q   R+    Q++      V
Sbjct: 540 DPAARRVLVATDCLSEGVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQKRDK----V 595

Query: 166 FVYYLI-AQNTIDELVLQRLRTK 187
            V  L    N ID  VL+ L  K
Sbjct: 596 RVITLYGIDNGIDGKVLEVLIAK 618


>gi|242055593|ref|XP_002456942.1| hypothetical protein SORBIDRAFT_03g046010 [Sorghum bicolor]
 gi|241928917|gb|EES02062.1| hypothetical protein SORBIDRAFT_03g046010 [Sorghum bicolor]
          Length = 1175

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 18/128 (14%)

Query: 70   PIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             +I+   F   +                 +       K    ++   +     L     +
Sbjct: 1014 KVIIFSQFLEHIHVIQQQLTIAGIIYAGMYSPMPLASKRSALMKFQEDPTCMALVM-DGT 1072

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  ++ +   +W       + +E   ++R  + G  R + V  L  + T++E
Sbjct: 1073 AALGLDLSFVTHVFLMEPIWD------RSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1126

Query: 179  LVLQRLRT 186
             +L+ L+ 
Sbjct: 1127 QMLRLLQD 1134


>gi|254384442|ref|ZP_04999783.1| helicase domain containing protein [Streptomyces sp. Mg1]
 gi|194343328|gb|EDX24294.1| helicase domain containing protein [Streptomyces sp. Mg1]
          Length = 976

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A       G+NLQ+  + ++ + L W+   H Q   R+    Q++      V V  
Sbjct: 555 RVLIAT-DCLSEGVNLQHYFDAVLHYDLAWNPTRHDQREGRVDRYGQKRD----EVRVIT 609

Query: 170 LIAQN-TIDELVLQRLRTKSTIQDL 193
           L   +  ID  VL+ L  K      
Sbjct: 610 LYGDDNGIDGKVLEVLIKKHRQIKK 634


>gi|326471326|gb|EGD95335.1| hypothetical protein TESG_02821 [Trichophyton tonsurans CBS 112818]
          Length = 2122

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 101  IQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+  GK      +L  +              N ++FF       ++         + R
Sbjct: 1986 ISEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVARSQYDYNSGMAQAIGR 2045

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+ G  + V +Y+++A  T++  + ++ R K  +   
Sbjct: 2046 SRRYGQLKHVHIYHVLALRTVEVNIFEK-RRKQYLAKR 2082


>gi|29841251|gb|AAP06283.1| similar to XM_051720 TBP associated factor in Homo sapiens
           [Schistosoma japonicum]
          Length = 106

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           + R  + G  R V VY LI +N+++E ++     K  +   +L
Sbjct: 1   MDRAHRIGQLRTVNVYRLITENSVEEQIMNLQAFKLYLATTVL 43


>gi|15643750|ref|NP_228798.1| hypothetical protein TM0990 [Thermotoga maritima MSB8]
 gi|4981530|gb|AAD36069.1|AE001761_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 967

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 34/216 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCL--QLANGAVYYDEEKHWKEVHDEKIKALEV 61
           Y + + E   ++        NS +K       Q+ N      +       +D K+K L  
Sbjct: 297 YDEMELEENSEIDDLISSIINSVAKRYPLDKGQI-NALEKILKIGKAIGKNDSKLKTLAE 355

Query: 62  II--EKANAAPIIVAYHFNSDLARLQKAF--------------------PQGRTLDKDPC 99
           ++         +IV   F   L  L+                         G   ++   
Sbjct: 356 VLAYHLKKNEKVIVFTEFKDTLEYLRNNLPTLLEQEGIHLSEEKDISVLHGGMKSEEIEK 415

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++       L         GLNLQ   NIL+ + + W   + +Q + RI      + 
Sbjct: 416 QVEKFANDGK--LLISTDVASEGLNLQ-VANILINYEIPWSPIKLEQRVGRIW-----RL 467

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
              +    Y L+  +  D  +L+ L  K   I D +
Sbjct: 468 NQTKETIAYTLLLNHEADLQILESLYQKILNITDAV 503


>gi|296163358|ref|ZP_06846116.1| helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295886390|gb|EFG66250.1| helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 1676

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 3/110 (2%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +   +  T  +      + N G   ++    A  G G N+Q            W   
Sbjct: 1281 HEIRFIHEATTDLQKAKLFDDMNRGHSRIMLGSTAKMGAGTNVQRRLVAEHHLDAPWRPS 1340

Query: 143  EHQQMIERIGVTRQR---QAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +Q   RI         +      V +     + T D  + Q +  K+ 
Sbjct: 1341 DLEQREGRILRQGNLFYEEDPDGFEVEILRYATKQTYDSRMWQTIEYKAA 1390


>gi|134287795|ref|YP_001109960.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132445|gb|ABO60428.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 1853

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 3/110 (2%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +   +  T  +      + N G   ++    A  G G N+Q            W   
Sbjct: 1458 HEIRFIHEATTDLQKAKLFDDMNRGHSRIMIGSTAKMGAGTNVQRRLVAEHHLDAPWRPS 1517

Query: 143  EHQQMIERIGVTRQR---QAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + +Q   RI         +      V +     + T D  + Q +  K+ 
Sbjct: 1518 DLEQREGRILRQGNLFYEEDPDGFEVEILRYATKQTYDSRMWQTIEYKAA 1567


>gi|120536967|ref|YP_957025.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326801|gb|ABM21110.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 2570

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T         +   G+I  L       G G N+Q     L      W   + +Q
Sbjct: 2131 FIHSAKTDADKEEMFAKCRSGEIRFLLGSTQKMGVGTNVQERLVALHELDPPWKPADIEQ 2190

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             + R+      Q       + Y  +  ++ D  + + L  K  + +  +
Sbjct: 2191 RLGRMDR----QGNSFETAYSYRYVTVDSFDLFMWETLNRKLKMVNQAM 2235


>gi|312222342|emb|CBY02282.1| hypothetical protein [Leptosphaeria maculans]
          Length = 2343

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIP------LLFAHPASCGHGLNLQYGGNILV 133
            D   +    P      +    I+++   + P      ++    +    G+NL    +I+ 
Sbjct: 2155 DHFEIPYYSPTRCRAAQSAKIIEDFKNNENPDERRKLVILNLGSESAAGINLTNANHIIF 2214

Query: 134  FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               L    +          + R R+ G K+ V++Y+++A+ TID  +++  R K  
Sbjct: 2215 VSPLAAKTQYEYDSAMVQAIARSRRYGQKKKVYIYHVVAERTIDVDIME-HRHKRN 2269


>gi|225430368|ref|XP_002282890.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 502

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 42/157 (26%), Gaps = 22/157 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           + Y       Y  L        +  +  ++  +L       +  +   E           
Sbjct: 347 EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDATEAYKLLLE 406

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------KDPCTIQ 102
              K++ L+ ++   K     +++   F   L  L+                 +    I 
Sbjct: 407 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKYERIDGKVGGAERQVRID 466

Query: 103 EWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137
            +N              + G G+NL    + ++ +  
Sbjct: 467 RFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDR 502


>gi|162453805|ref|YP_001616172.1| SNF2/RAD54 family helicase [Sorangium cellulosum 'So ce 56']
 gi|161164387|emb|CAN95692.1| putative SNF2/RAD54 family helicase [Sorangium cellulosum 'So ce
           56']
          Length = 563

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 39/219 (17%)

Query: 2   KQYHK----FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y +    F+RE+  DL  +     ++ +  ++  Q          +     V      
Sbjct: 358 ELYAQAWTAFRREM--DLLPKGANPKSALAAMLRLRQ----------KSSLIRVGSTVEL 405

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLA---------RLQKAFPQGRTLDKDPCTIQ-EWNEG 107
             E++    N   + V+  F   L          R+  A   G     +    +  +  G
Sbjct: 406 VRELL---DNGHQVAVSVAFMETLEAVEAALARERVPCALIHGALPAGEKEAERLRFQRG 462

Query: 108 KIPLLFAHPASCGHGLNLQYGG--NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +  ++             ++       V   L W   +  Q+  R     +         
Sbjct: 463 EPRVVLFTVEEGISLHQGEHNEVPRSAVIHDLRWSAIQMAQIEGRCHRNGRFA------- 515

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            VY+  A +T+++ +   +  +      ++     ET+H
Sbjct: 516 QVYWAYADDTVEDKIAAIVCRRIRSMKAMVGDDV-ETMH 553


>gi|10957432|ref|NP_051666.1| ATP-dependent helicase HepA [Deinococcus radiodurans R1]
 gi|6460861|gb|AAF12565.1|AE001826_34 ATP-dependent helicase HepA [Deinococcus radiodurans R1]
          Length = 941

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T D+    ++E    +  +L A       G+NLQ   + ++ + L W+     Q   R+
Sbjct: 515 HTPDERVDRVEELARAERRVLVAT-DCLSEGINLQAAFSAVIHYDLPWNPTRLDQREGRV 573

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDLLLN 196
               Q        V V  +  ++  ID L+L+ L  K  +    L 
Sbjct: 574 DRYGQASP----EVRVLTIYGEDNRIDTLILEVLVRKHRLIRATLG 615


>gi|154281551|ref|XP_001541588.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411767|gb|EDN07155.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 550

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 101 IQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
           I E+          +L  H              N ++FF   +   ++           R
Sbjct: 420 IAEFQTRAEKVGSKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYNSGMAQATGR 479

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R+ G ++ V +Y+ +A  TI+  + +  R +  +   
Sbjct: 480 SRRYGQQKHVHIYHFLALKTIEVNIFE-QRRRERLVKR 516


>gi|240147298|ref|ZP_04745899.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
 gi|257200514|gb|EEU98798.1| putative superfamily II DNA and RNA helicase [Roseburia intestinalis
            L1-82]
          Length = 1438

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++  L       G G N+Q     L    + W   + +Q
Sbjct: 1299 FIHDANTELRKAELFGKVRSGQVRFLLGSTQKMGAGTNVQDRLIALHHLDVPWRPSDIEQ 1358

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      V ++  + + T D    Q +  K      ++ +
Sbjct: 1359 QEGRILR----QGNLNPKVKIFRYVTEGTFDSYSWQLIENKQKFIGQIMTS 1405


>gi|182676880|ref|YP_001831027.1| helicase domain-containing protein [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182636510|gb|ACB97283.1| helicase domain protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1693

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                  + N GK+  L     + G G+N Q     L    + W   + +Q   RI     
Sbjct: 1339 KQRLFNDVNAGKVRFLIGSTQTMGTGVNAQQRLIALHHLDVPWLPSDIEQREGRIER--- 1395

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
             Q      + ++  +A+ ++D    Q L  K+   D+ ++  +
Sbjct: 1396 -QGNQNAEIRLFAYVAKGSVDATGWQLLERKARFIDMAMSGDR 1437


>gi|315043012|ref|XP_003170882.1| hypothetical protein MGYG_06873 [Arthroderma gypseum CBS 118893]
 gi|311344671|gb|EFR03874.1| hypothetical protein MGYG_06873 [Arthroderma gypseum CBS 118893]
          Length = 1118

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
             A  G    L       VF     +       IE   + R  +    R V+V  L+ ++
Sbjct: 889 SVAKVGASHGLHIAAASRVFI---VNP-IWDPNIESQAIKRAHRISQTRPVYVETLVLKD 944

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           T+++ +L+R   +  +    +   +K+ + 
Sbjct: 945 TLEDKMLRR---RKAMTSTEMQHAEKDMLD 971


>gi|291614396|ref|YP_003524553.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584508|gb|ADE12166.1| DNA methylase N-4/N-6 domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 843

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 55/152 (36%), Gaps = 13/152 (8%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ------KAFPQGRTLDKDPCTIQEWNE 106
             ++     ++ +A     +V +    +   +Q       +    + LD     I ++++
Sbjct: 302 SARVAKAAELVNEAPDDHFVVWHDLEDERREIQTVLPEAMSVWGSQDLDAREQRIIDFSD 361

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK  +L   P   G G N Q   +  +F  + +   +         + R ++   +  V 
Sbjct: 362 GKYRILSTKPIIAGSGCNFQRHCHREIFSGIGFKFNDFI-----QAIHRVQRFQQEFEVR 416

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +  +  +   +  +L+ L  K      ++N +
Sbjct: 417 IDIIHTE--AEREILRTLLAKWEQHKDMVNKV 446


>gi|4140506|gb|AAD04088.1| active gene-repairing helicase [Chlamydia trachomatis]
          Length = 79

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 3/66 (4%)

Query: 23 FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSD 80
           +  +   +  Q+      +  +   +     K   L  ++     +    +V   +   
Sbjct: 3  IHVLATLTRLKQICCHPAIFA-KDTPEPGDSAKYDMLMDLLSSLVDSGHKTVVFSQYTKM 61

Query: 81 LARLQK 86
          L  +++
Sbjct: 62 LGIIRQ 67


>gi|160934679|ref|ZP_02082065.1| hypothetical protein CLOLEP_03552 [Clostridium leptum DSM 753]
 gi|156866132|gb|EDO59504.1| hypothetical protein CLOLEP_03552 [Clostridium leptum DSM 753]
          Length = 1014

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFN---SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
           E+ D KI + E +I       +      +   ++         Q     K    + +  +
Sbjct: 760 ELVDRKIASGERVIIYTAWTRLDTQSKLHKLLTERGIRTAVLDQKVPTTKREAWVDKRIQ 819

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA-V 165
               +L  +P     GL+L      L+F+++ ++L      I R    R  +       V
Sbjct: 820 EDTKVLIVNPMLVETGLDL-NAFTTLIFYNVAYNL-----YIFRQASRRSWRINQTAPKV 873

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
            VY    Q+T+ +  L+ + +K +   ++   + +E +
Sbjct: 874 EVYMFYYQDTMQQRALRLMASKLSAATVIEGNVSEEGL 911


>gi|322708293|gb|EFY99870.1| putative protein RIS1 [Metarhizium anisopliae ARSEF 23]
          Length = 897

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 6/124 (4%)

Query: 74  AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
                         F       K              +  +   + G  LN+    N ++
Sbjct: 758 GSMLKHARIGFVYYFGSMGDKKKKKALEMFKKSPTTNVFLSGLMAGGQSLNIT-CANRII 816

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               WW++             R  + G  +  +V  +      D  V +  ++KS   D 
Sbjct: 817 IIDPWWNVTSEL-----QAAGRTSRIGQTKKCYVVRIFTSAATDARVAELQKSKSEEVDH 871

Query: 194 LLNA 197
            L  
Sbjct: 872 ALQD 875


>gi|308080914|ref|NP_001183699.1| hypothetical protein LOC100502292 [Zea mays]
 gi|238013978|gb|ACR38024.1| unknown [Zea mays]
          Length = 265

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                +     R  + G +R V V+ L+   +++EL+  R   K  + ++ ++ 
Sbjct: 11  WNPAQDLQAQDRSFRYGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLSNIAVSG 64


>gi|302824252|ref|XP_002993771.1| hypothetical protein SELMODRAFT_431801 [Selaginella moellendorffii]
 gi|300138421|gb|EFJ05190.1| hypothetical protein SELMODRAFT_431801 [Selaginella moellendorffii]
          Length = 412

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 32/151 (21%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--------DEKIKALEVIIEKAN----- 67
             F   S  ++  Q+ +       E  ++  +         +  +AL+ +  +A      
Sbjct: 258 NRFKILSMLLRLRQMCDHPALLKSEDLFQGDNLDNDDEDQKQMRQALKKLQLEAQEKQHD 317

Query: 68  -------AAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWN-EGKI 109
                      +V   + S L  ++                  + K    I  +N + ++
Sbjct: 318 FERDDSLGEKSLVFSQWTSMLDLIELELECSGIKFARIDGSMNMTKREAAIGRFNKDPEV 377

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            +L     + G GLNL    + ++   +WW+
Sbjct: 378 MVLLLSLRAAGCGLNLVA-ASRVLLIDMWWN 407


>gi|291530019|emb|CBK95604.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2877

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  K     ++   G++ +L       G G N+Q            W   + +Q
Sbjct: 2509 FIHEADTEAKKQELFKKVRRGEVRILMGSTQKMGAGTNVQNKIIASHDLDCPWRPADLEQ 2568

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R       Q      V +Y  + + T D    Q +  K      ++ +
Sbjct: 2569 RAGRTVR----QGNENPKVGLYRYVTEGTFDAYCWQLVEGKQKFSSQIMTS 2615


>gi|239835171|ref|ZP_04683497.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
 gi|239821147|gb|EEQ92718.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
          Length = 3526

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 3/108 (2%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            R         T  +      +   G+I +L       G G N+Q     L      W   
Sbjct: 1835 REIAFIHDANTDLQKQELFGKVRSGQIRVLIGSTPKMGAGTNVQNRLVALHHLDAPWRPS 1894

Query: 143  EHQQMIERIGVTR---QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + +Q   RI                V ++    + T+D    Q +  K
Sbjct: 1895 DLEQREGRIIRQGNELYAADPDGFEVEIHRYGTERTLDAKQWQTIEQK 1942


>gi|91974494|ref|YP_567153.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
 gi|91680950|gb|ABE37252.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
          Length = 924

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     +   E  I  L     +   GLNLQ  G ++    L W+    +Q I RI    
Sbjct: 749 EREQIKKAVKERTIR-LVVATDAACEGLNLQTLGTLIN-VDLPWNPSRLEQRIGRIKRFG 806

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           QR+        VY+   Q T+DE V Q+L ++  
Sbjct: 807 QRRERVDMLNLVYHGSQQLTVDEKVYQKLSSRMK 840


>gi|326915689|ref|XP_003204146.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like, partial
           [Meleagris gallopavo]
          Length = 118

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              + KI +L     +  +GLN+      ++      +     Q I R+      + G  
Sbjct: 6   FKYDPKINILLLPLHTGSNGLNI-IEATHVLLVEPILNPAHELQAIGRV-----HRIGQT 59

Query: 163 RAVFVYYLIAQNTIDELVLQRLR 185
           ++  V+  + + TI+E +   L+
Sbjct: 60  KSTIVHRFLIKATIEERMQTMLK 82


>gi|119952794|ref|YP_950168.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951924|gb|ABM10833.1| putative helicase [Arthrobacter aurescens TC1]
          Length = 1829

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G N+Q     LV     W   + +Q   RI      Q      V
Sbjct: 1432 SGQIAVLVGSTSKMGVGTNIQKRAVHLVDMDAPWRPADVEQRHGRILR----QGNQNPEV 1487

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  ++ + + D  + Q L  KS   + ++
Sbjct: 1488 RISQVVTKESFDSFMWQGLERKSRFINQIM 1517


>gi|302797434|ref|XP_002980478.1| hypothetical protein SELMODRAFT_6816 [Selaginella moellendorffii]
 gi|300152094|gb|EFJ18738.1| hypothetical protein SELMODRAFT_6816 [Selaginella moellendorffii]
          Length = 89

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           ++        +GLNL      ++      +       +E   + R  + G +    V+  
Sbjct: 1   VMLLPIQHGANGLNL-IEAQHVILVEPLLNPA-----VEAQAINRVHRIGQRLKTLVHRF 54

Query: 171 IAQNTIDELVLQRLRTKSTI 190
           I  NT++E + +  + K+ +
Sbjct: 55  IICNTVEENIYKMSQQKTNL 74


>gi|290956132|ref|YP_003487314.1| helicase SNF2 family protein [Streptomyces scabiei 87.22]
 gi|260645658|emb|CBG68749.1| putative helicase SNF2 family protein [Streptomyces scabiei 87.22]
          Length = 988

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A       G+NLQ+  + +V + L W+   H Q   R+    QR    K  V V  
Sbjct: 558 RVLIAT-DCLSEGVNLQHHFDAVVHYDLAWNPTRHDQREGRVDRYGQR----KDQVRVIT 612

Query: 170 LIAQN-TIDELVLQRLRTKSTIQDL 193
           L   +  ID  VL+ L  K      
Sbjct: 613 LYGDDNGIDGKVLEVLIKKHRQIKK 637


>gi|129282387|gb|ABO30185.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282389|gb|ABO30186.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282391|gb|ABO30187.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282393|gb|ABO30188.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282395|gb|ABO30189.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282397|gb|ABO30190.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282399|gb|ABO30191.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282401|gb|ABO30192.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282403|gb|ABO30193.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282405|gb|ABO30194.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282407|gb|ABO30195.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282409|gb|ABO30196.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282411|gb|ABO30197.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282413|gb|ABO30198.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282415|gb|ABO30199.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282417|gb|ABO30200.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282419|gb|ABO30201.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282421|gb|ABO30202.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282423|gb|ABO30203.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282425|gb|ABO30204.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282427|gb|ABO30205.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282429|gb|ABO30206.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282431|gb|ABO30207.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282433|gb|ABO30208.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282435|gb|ABO30209.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282437|gb|ABO30210.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282439|gb|ABO30211.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282441|gb|ABO30212.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282443|gb|ABO30213.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282445|gb|ABO30214.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282447|gb|ABO30215.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282449|gb|ABO30216.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282451|gb|ABO30217.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282453|gb|ABO30218.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282455|gb|ABO30219.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282457|gb|ABO30220.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccoides]
 gi|129282459|gb|ABO30221.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282461|gb|ABO30222.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282463|gb|ABO30223.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282465|gb|ABO30224.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282467|gb|ABO30225.1| SNF2 family N-terminal domain protein [Triticum timopheevii subsp.
           armeniacum]
 gi|129282469|gb|ABO30226.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282471|gb|ABO30227.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282473|gb|ABO30228.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282475|gb|ABO30229.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282477|gb|ABO30230.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282479|gb|ABO30231.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282481|gb|ABO30232.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282483|gb|ABO30233.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282485|gb|ABO30234.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282487|gb|ABO30235.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282489|gb|ABO30236.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282491|gb|ABO30237.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282493|gb|ABO30238.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282495|gb|ABO30239.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282497|gb|ABO30240.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282499|gb|ABO30241.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282501|gb|ABO30242.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282503|gb|ABO30243.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282505|gb|ABO30244.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282507|gb|ABO30245.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282509|gb|ABO30246.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282511|gb|ABO30247.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282513|gb|ABO30248.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282515|gb|ABO30249.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282517|gb|ABO30250.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282519|gb|ABO30251.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282521|gb|ABO30252.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282523|gb|ABO30253.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282527|gb|ABO30255.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282529|gb|ABO30256.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282531|gb|ABO30257.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282533|gb|ABO30258.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282535|gb|ABO30259.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282537|gb|ABO30260.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282539|gb|ABO30261.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282541|gb|ABO30262.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           dicoccon]
 gi|129282543|gb|ABO30263.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282545|gb|ABO30264.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282547|gb|ABO30265.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282549|gb|ABO30266.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282551|gb|ABO30267.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282553|gb|ABO30268.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282555|gb|ABO30269.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282557|gb|ABO30270.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282559|gb|ABO30271.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282561|gb|ABO30272.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282563|gb|ABO30273.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282565|gb|ABO30274.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282567|gb|ABO30275.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282569|gb|ABO30276.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282571|gb|ABO30277.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282573|gb|ABO30278.1| SNF2 family N-terminal domain protein [Triticum turgidum subsp.
           durum]
 gi|129282575|gb|ABO30279.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282577|gb|ABO30280.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282579|gb|ABO30281.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282581|gb|ABO30282.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282583|gb|ABO30283.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282585|gb|ABO30284.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282587|gb|ABO30285.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282589|gb|ABO30286.1| SNF2 family N-terminal domain protein [Triticum aestivum]
 gi|129282591|gb|ABO30287.1| SNF2 family N-terminal domain protein [Triticum aestivum]
          Length = 69

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E     R  + G  + +     + ++T++E +LQ    K  + D  +  
Sbjct: 1   VESQAQDRIHRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFDGTVGD 50


>gi|242316276|ref|ZP_04815292.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           1106b]
 gi|242139515|gb|EES25917.1| putative helicase SNF2 family protein [Burkholderia pseudomallei
           1106b]
          Length = 1064

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 57/161 (35%), Gaps = 38/161 (23%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN----EGKI 109
           N   +I+   + +    + +                 G + ++       +     +  +
Sbjct: 539 NDRRVILFTEYRTTHQWMHQILASHGFGGERLGLLHGGLSQEEREPIKAAFQASPQDSPV 598

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +++
Sbjct: 599 RILLAT-DAASEGIDLQNHCNRLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWH 653

Query: 170 LI--------AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +        +   + E +L+ LR         L++++ + 
Sbjct: 654 PVDGGGANGASVGGLGEDILRALRK--------LDSMRADM 686


>gi|119508908|ref|ZP_01628060.1| putative ATP-dependent helicase [Nodularia spumigena CCY9414]
 gi|119466437|gb|EAW47322.1| putative ATP-dependent helicase [Nodularia spumigena CCY9414]
          Length = 958

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 91  GRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
           G         ++++ + K P+ +         GLNL Y  + L+ F + W L   QQ   
Sbjct: 486 GMADVDQVKIVEQFGQEKSPVRILIATEVASEGLNLHYLSHKLIHFDIPWSLMTLQQRNG 545

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTID-----ELVLQRLRTKSTIQ 191
           RI      + G  R   + YL+ ++T++     + ++Q L  K    
Sbjct: 546 RID-----RYGQTRQPEIRYLLTRSTLERMDEVKRIIQVLLVKDEQA 587


>gi|126452260|ref|YP_001067911.1| SNF2-related:helicase, C-terminal [Burkholderia pseudomallei 1106a]
 gi|126225902|gb|ABN89442.1| SNF2-related:Helicase, C-terminal [Burkholderia pseudomallei 1106a]
          Length = 1045

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 57/161 (35%), Gaps = 38/161 (23%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN----EGKI 109
           N   +I+   + +    + +                 G + ++       +     +  +
Sbjct: 520 NDRRVILFTEYRTTHQWMHQILASHGFGGERLGLLHGGLSQEEREPIKAAFQASPQDSPV 579

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +++
Sbjct: 580 RILLAT-DAASEGIDLQNHCNRLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWH 634

Query: 170 LI--------AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +        +   + E +L+ LR         L++++ + 
Sbjct: 635 PVDGGGANGASVGGLGEDILRALRK--------LDSMRADM 667


>gi|254197563|ref|ZP_04903985.1| dead/deah box helicase [Burkholderia pseudomallei S13]
 gi|169654304|gb|EDS86997.1| dead/deah box helicase [Burkholderia pseudomallei S13]
          Length = 755

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 633 RREDWIAEQLDRGIDVLITNPDLVKTGLDLLDFPTIVFMQSGYNVYTLQ------QAARR 686

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V YL   +T     L  +  K  +   
Sbjct: 687 SWRIGQKQPVKVIYLGYADTSQMHCLTLMAKKIAVSQS 724


>gi|300174909|dbj|BAJ10682.1| hypothetical protein [Streptococcus thermophilus]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L A     G GLN+Q     +    + W   +  Q   R+      Q    + V +Y+ I
Sbjct: 2   LMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQRNGRLIR----QGNMHQEVDIYHYI 57

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            + + D  + Q    K      ++ +
Sbjct: 58  TKGSFDNYLWQTQENKLKYITQIMTS 83


>gi|308804449|ref|XP_003079537.1| RING finger-like protein (ISS) [Ostreococcus tauri]
 gi|116057992|emb|CAL54195.1| RING finger-like protein (ISS) [Ostreococcus tauri]
          Length = 1539

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 84   LQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             +     G+T  +    ++ + N+  + +L  +  +   GL+L    + +       ++ 
Sbjct: 1022 HESITRIGQTRFEREEALKTFKNDPDVAVLLLN-RAAAEGLDL-SFVSYVFLMEPLSNMS 1079

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              +Q++ R       + G    V V  L  +NT +E +L     
Sbjct: 1080 LEEQVVSR-----AHRMGQMDTVHVEVLAMENTAEETMLDVQAE 1118


>gi|32470929|ref|NP_863922.1| DEAH ATP-dependent helicase [Rhodopirellula baltica SH 1]
 gi|32443074|emb|CAD71596.1| probable DEAH ATP-dependent helicase [Rhodopirellula baltica SH 1]
          Length = 901

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +         + ++ LL A   +   GLNLQ  G ++    L W+    +Q + RI    
Sbjct: 737 EREELKHAVKKRELRLLVAT-DAACEGLNLQTLGTLIN-VDLPWNPSRLEQRLGRIKRFN 794

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           Q +    R V +  L+  +T DE V Q L  +  
Sbjct: 795 QAR----RTVDMLNLVYHDTQDERVYQVLSRRMK 824


>gi|312139080|ref|YP_004006416.1| helicase and type iii restriction enzyme [Rhodococcus equi 103S]
 gi|311888419|emb|CBH47731.1| putative helicase and type III restriction enzyme [Rhodococcus equi
           103S]
          Length = 959

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               G +  +    +  +     P+ +         G+NL    + L+ + + W L   +
Sbjct: 480 MLHGGLSDVEQQEIVDSFKLETSPIRVLVTGDVASEGVNLHAQCHHLIHYDIPWSLIRIE 539

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNAL 198
           Q   R+      + G K    +  LI +      + D  VL RL  +       L  +
Sbjct: 540 QRNGRVD-----RYGQKHPPVISSLILEPSDPEFSGDLRVLSRLLERENQAHGTLGDV 592


>gi|254423590|ref|ZP_05037308.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
 gi|196191079|gb|EDX86043.1| Helicase conserved C-terminal domain protein [Synechococcus sp. PCC
           7335]
          Length = 1054

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNE----GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                G    +       +        + +L A   +   GL+LQ   + L+ + + W+ 
Sbjct: 559 MTLYGGMDSKEREQAKAAFQAKPEISPVRILLAT-DAASEGLDLQNHCSRLIHYEIPWNP 617

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +Q   R+    QR       V +Y+ +A  
Sbjct: 618 NRMEQRNGRVDRHGQR----ADEVSIYHFVAAG 646


>gi|156053363|ref|XP_001592608.1| hypothetical protein SS1G_06849 [Sclerotinia sclerotiorum 1980]
 gi|154704627|gb|EDO04366.1| hypothetical protein SS1G_06849 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 2003

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 92   RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               +     ++E+    K  +L       G GLNL    N  +   LWW+     Q   R
Sbjct: 1856 MKSNDQAHILREFETNPKFTILIIGLKVGGVGLNL-AFANRAIMVDLWWNAATESQANGR 1914

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            I      + G ++       + + ++D  +L+    K
Sbjct: 1915 I-----FRIGQEKETNFARFMMRESVDIRLLRMQVEK 1946


>gi|71003830|ref|XP_756581.1| hypothetical protein UM00434.1 [Ustilago maydis 521]
 gi|46096112|gb|EAK81345.1| hypothetical protein UM00434.1 [Ustilago maydis 521]
          Length = 1828

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKD 97
              W       I  L+  + +      +V  H+   L   ++A           G    K 
Sbjct: 1479 GDWSGKISGLIVDLKERLAQDPTHKAVVFSHWPKMLTFAREALVQNGVSAVVFGGNETKQ 1538

Query: 98   PCTIQEWNEG-KIPLLFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++   +   + ++     +      L     ++        D     Q + RI    
Sbjct: 1539 AEALRAMRDDDHVHVILVPFRASAGAAGLSLTSCDLAYLLEPALDTALEAQAVARI---- 1594

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G +R   +  +  ++TI++ V++    +
Sbjct: 1595 -HRIGQRRETTIIRVKMKDTIEDAVMRIADER 1625


>gi|313897139|ref|ZP_07830684.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
 gi|312958067|gb|EFR39690.1| helicase C-terminal domain protein [Clostridium sp. HGF2]
          Length = 461

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
               R         T +     +  +  G +  L   P+ CG G+N Q   + ++F  L 
Sbjct: 314 HKAIRESVEVKGSDTPEHKEKAMMGFASGDVKYLVTKPSICGFGMNWQN-CHDMIFCGLS 372

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              E+         + R  + G K  V V+ +I++   +  VL  ++ K T  +     +
Sbjct: 373 DSYEQFY-----QAIRRCYRFGQKHEVNVHVIISEK--EMNVLNNIKRKQTDHER----M 421

Query: 199 KKETIHV 205
             E + V
Sbjct: 422 SAEMVKV 428


>gi|150863827|ref|XP_001382433.2| DNA-dependent ATPase of the nucleotide excision repair factor 4
            complex [Scheffersomyces stipitis CBS 6054]
 gi|149385083|gb|ABN64404.2| DNA-dependent ATPase of the nucleotide excision repair factor 4
            complex [Scheffersomyces stipitis CBS 6054]
          Length = 1343

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGL +      + F S        Q+ IE   + R  + G  + V V  L+
Sbjct: 1127 LIMDLRLAAHGLTI-VEATHVYFMSP-----VWQRSIEAQAIKRAHRIGQTKDVHVETLV 1180

Query: 172  AQNTIDELVLQR 183
             + T++E + +R
Sbjct: 1181 LRGTLEEEIYKR 1192


>gi|116662342|ref|YP_829395.1| helicase domain-containing protein [Arthrobacter sp. FB24]
 gi|116613121|gb|ABK05814.1| helicase domain protein [Arthrobacter sp. FB24]
          Length = 1575

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G N+Q     LV     W   + +Q   RI      Q      V
Sbjct: 1178 SGQIAVLMGSTSKMGVGTNIQKRAVHLVDMDAPWRPSDVEQRHGRILR----QGNQNSEV 1233

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  ++ + + D  + Q L  KS   + ++
Sbjct: 1234 RISQVVTKESFDSFMWQGLERKSRFINQIM 1263


>gi|15227191|ref|NP_179232.1| DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding /
           DNA binding / helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|4544390|gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251398|gb|AEC06492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
          Length = 888

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 93  TLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           + ++   +++ +N      + F    +CG G++L  G + ++   +  +         R 
Sbjct: 750 SSEQREWSMETFNSSPDAKIFFGSIKACGEGISL-VGASRILILDVPLNPSVT-----RQ 803

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + R  + G K+ V  Y LIA ++ +E        K  I  +
Sbjct: 804 AIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKM 845


>gi|78211593|ref|YP_380372.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78196052|gb|ABB33817.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 534

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 26/190 (13%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
              L     +A +  +      Q+A     +      + V   +               +
Sbjct: 344 RARLGEVRRDAEH-LALLTSMRQIA---AEFKLPAAQQLVESLR----------RQGEAV 389

Query: 72  IVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++   F + L  LQ+          +   +   ++  + +G+   L A   +   G  L 
Sbjct: 390 VLFSGFVAPLHLLQQTLGGELLTGRQRPAERQESVDRFQQGQNDCLLATFGTGALGFTLH 449

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                +V     W   +  Q  +R                 ++L      D+LV   L +
Sbjct: 450 R-ARHVVLLERPWTPGDLDQAEDRCHRLGMGDGL-----TCHWLQL-GAADQLVDGLLAS 502

Query: 187 KSTIQDLLLN 196
           K+   ++LL 
Sbjct: 503 KAERIEVLLG 512


>gi|208434933|ref|YP_002266599.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208432862|gb|ACI27733.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 2808

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 2336 FIHDAKTEEQKQDLFKKLNRGEVRVLLGSPAKMGVGTNVQERLVAMHELDCPWRSDELLQ 2395

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 2396 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 2451


>gi|148241137|ref|YP_001226294.1| SNF2 family DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147849447|emb|CAK26941.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp.
           RCC307]
          Length = 532

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 28/195 (14%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             +++     L   + E     +      QL++              H        +   
Sbjct: 338 DAYRKRAAAGLVRSDAER---LALLTALRQLSS-------------FHKLAALQQLLDQL 381

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQG-----RTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           + +  P++V   F   L +L +              +    +Q + +G   LL A     
Sbjct: 382 QVSGDPVVVFSGFRGPLLQLHRLRGGELLTGLVDPAERLERLQRFQQGDSNLLLATYGVA 441

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G GL LQ   + ++     W   + +         R  + G +R V  ++L      D L
Sbjct: 442 GLGLGLQR-ASQVILLERPWTPGDAE-----QAEDRCHRFGTRRTVECHWLQL-GGADAL 494

Query: 180 VLQRLRTKSTIQDLL 194
           V   + +KS   +++
Sbjct: 495 VDGLILSKSERIEVV 509


>gi|219849463|ref|YP_002463896.1| helicase domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219543722|gb|ACL25460.1| helicase domain protein [Chloroflexus aggregans DSM 9485]
          Length = 957

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 77  FNSDLARLQKAFPQGRT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           F   L+ +      GR   ++    I      +  +L A       G+NL    N  + +
Sbjct: 505 FRHHLSGVHVTCVTGRMGEEERRAVIAAAPVDQPRVLVAT-DCISEGINLHERYNAAIHY 563

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            L W+    +Q   R+    Q        V V Y    N +D +V+  L  K+      L
Sbjct: 564 DLPWNPNRLEQREGRVDRYGQTAPTV---VTVRYYGLNNEVDTVVIDVLLRKAREIRRAL 620

Query: 196 NA 197
            A
Sbjct: 621 GA 622


>gi|106364397|dbj|BAE95223.1| ATP-dependent RNA helicase [unclutured Candidatus Nitrosocaldus
           sp.]
          Length = 589

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G   ++    ++ +  G+  +L A  +    GL++    N+++F+          Q   
Sbjct: 446 YGLRQEEQVEVVERFRAGEYSILVAT-SVGEEGLDI-AECNLVIFYDNVPSAIRFVQRKG 503

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           R G              V  L+A++TIDE      R K      +++ + +
Sbjct: 504 RTGRR--------MPGKVIVLVAKDTIDEAYHWISRKKVRQVRSIVSIVNR 546


>gi|317180791|dbj|BAJ58577.1| hypothetical protein HPF32_0995 [Helicobacter pylori F32]
          Length = 1183

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +T ++     ++ N G++ +L   PA  G G N+Q     +      W  +E  Q
Sbjct: 667 FIHDAKTEEQKQDLFKKLNRGEVMVLLGSPAKMGVGTNVQERLVAMHELDCPWRPDELLQ 726

Query: 147 MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           M  R    G    +       + +Y    + T D  + Q + TKS   +   NA K
Sbjct: 727 MEGRGIRQGNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHK 782


>gi|254884184|ref|ZP_05256894.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013702|ref|ZP_05285828.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|254836977|gb|EET17286.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1659

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERTRKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V V     + T+D      L+ K    + +
Sbjct: 1346 QRNGRAIRKGNTVKLWGGNVVDVVIYGTEKTLDAYKFNLLKNKQMFINQI 1395


>gi|323449101|gb|EGB04992.1| hypothetical protein AURANDRAFT_17564 [Aureococcus anophagefferens]
          Length = 76

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +  +L    A+ G GLN+    N +V    +          E     R  + G  R V
Sbjct: 1   DPETSVLLLTLATAGVGLNITN-ANKVVILEPFRFGSN-----EAQAAMRVHRIGQSRDV 54

Query: 166 FVYYLIAQNTIDELVLQRLRTKS 188
            +     + T+DE +L+ LR K 
Sbjct: 55  EIIKFFTRGTMDERLLK-LRHKR 76


>gi|302554146|ref|ZP_07306488.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471764|gb|EFL34857.1| helicase domain-containing protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1072

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           +D     + +   +           +   +  ++     +   G++LQ   ++LV + + 
Sbjct: 482 ADEGYSARMYSGRQRSADRDEARSAFMRSEYQIIV-TTDAGNEGIDLQA-AHVLVNYDIP 539

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRT 186
           W L   +Q + RI      + G  R VF+Y L+A +T + E +   L  
Sbjct: 540 WSLVRLEQRMGRI-----HRVGQTRDVFLYNLVAVDTREGETLHTLLER 583


>gi|27375975|ref|NP_767504.1| hypothetical protein blr0864 [Bradyrhizobium japonicum USDA 110]
 gi|27349114|dbj|BAC46129.1| blr0864 [Bradyrhizobium japonicum USDA 110]
          Length = 1073

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 95  DKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           DK     + +N       + +L     +   G+NLQ   + L+ F L W+    +Q   R
Sbjct: 563 DKREAVKRAFNTDPAIEPVRILLCT-DAAREGINLQTYCSDLIHFDLPWNPSRLEQRNGR 621

Query: 151 IGVT---------RQRQAGFKRAVFVYYLIAQNT-------------IDELVLQRLRT 186
           I            R  +   + A  V   + + T             I+E V +RL  
Sbjct: 622 IDRKLQPAKLIICRYFKYEQREADIVLDALVRKTESIRNQLGSVGQLIEERVTKRLAE 679


>gi|257440757|ref|ZP_05616512.1| ATP-dependent helicase [Faecalibacterium prausnitzii A2-165]
 gi|257196731|gb|EEU95015.1| ATP-dependent helicase [Faecalibacterium prausnitzii A2-165]
          Length = 961

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 91  GRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           G +  +    ++++   E    +L A       GLNL Y  + L+ F + W L   QQ  
Sbjct: 492 GMSDAEQQRIVEDFGRTESSTRILVAS-DVASEGLNLHYLSHRLIHFDIPWSLMVFQQRN 550

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNT----IDELVLQRLRTKSTIQ 191
            RI    Q     KR    Y LI  N      D  +++ L  K    
Sbjct: 551 GRIDRYGQ----QKRPDIRYLLIESNNKQIKGDMRIIEILIQKEEQA 593


>gi|311104291|ref|YP_003977144.1| helicase [Achromobacter xylosoxidans A8]
 gi|310758980|gb|ADP14429.1| helicase conserved C-terminal domain protein [Achromobacter
           xylosoxidans A8]
          Length = 759

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|126667783|ref|ZP_01738750.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
 gi|126627731|gb|EAZ98361.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
          Length = 2567

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 4/110 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T         +   G++  L       G G N+Q     +      W   + +Q
Sbjct: 2115 FIHDAKTDADKEKLFAQVRSGEVRFLLGSTQKMGVGTNVQERLIAIHQLDPPWKPSDIEQ 2174

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             + R  + RQ         F Y  + +++ D  + + L  K  +    + 
Sbjct: 2175 RLGR--MDRQGNMFETAHNFTY--VTEDSFDLFMWETLNRKLKMIRQAMQ 2220


>gi|281355130|ref|ZP_06241624.1| type III restriction protein res subunit [Victivallis vadensis ATCC
            BAA-548]
 gi|281318010|gb|EFB02030.1| type III restriction protein res subunit [Victivallis vadensis ATCC
            BAA-548]
          Length = 1689

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 92   RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             T  +     +  N G++ ++       G G+N+Q    +       +   + +Q   RI
Sbjct: 1282 NTDKQKADLFERVNSGEVRIIIGSTMKLGTGVNIQERLAVEHDLDCPFRPADVEQRKGRI 1341

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
                  Q      V +     + T+D  +   L  K    +   +A+K  
Sbjct: 1342 VR----QGNILEEVEIIRYGIEQTLDAGMYAILERKQKFIN---DAMKGR 1384


>gi|302802608|ref|XP_002983058.1| hypothetical protein SELMODRAFT_155610 [Selaginella moellendorffii]
 gi|300149211|gb|EFJ15867.1| hypothetical protein SELMODRAFT_155610 [Selaginella moellendorffii]
          Length = 1114

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 22/164 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAA------PIIVAYHFNSDLARLQKAFPQG- 91
             +  D    W+     K+  L   +              IV   F   ++ ++    +G 
Sbjct: 926  YIQEDWHSEWQATSSSKVSYLVERLRGLQQENGKLPEKAIVFSQFLEHISAIEMQLTKGG 985

Query: 92   ---------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                             +++ + E    ++    +S   GL+L +  ++ +   +W    
Sbjct: 986  IEHAGMYSPMPAASKMKSLRTFQENPKCVVLLMDSSSALGLDLSFVTHVFLMEPIWD--- 1042

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + IE   V+R  + G  R V V  L    TI+E +L  L+ 
Sbjct: 1043 ---RSIEEQVVSRAHRMGATRPVLVETLAMAGTIEEQMLGFLQR 1083


>gi|302665555|ref|XP_003024387.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291188439|gb|EFE43776.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 2047

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLA-----RLQKA 87
                ++ +     +    K  A+  ++E     P    +++   F   +          +
Sbjct: 1835 CHPEWHTQTDKLAKYGSSKFTAVIELLEDTEKVPADDQVLLFIQFPELMDAASKALEAAS 1894

Query: 88   FPQGRTLDKDP---CTIQEWNEGK----IPLLFAHP-ASCGHGLNLQYGGNILVFFSLWW 139
             P       D      I E+  GK      +L  +       GLNLQ   +I+ F  L  
Sbjct: 1895 IPHTVIQPGDRTPTSKISEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVA 1954

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +          + R R+ G  + V +Y+++A   ++  + +  R K  +   
Sbjct: 1955 RSQYDYDSGMAQAIGRSRRYGQLKHVHIYHVLALRRVEVNIFE-QRRKQYLAKR 2007


>gi|302822214|ref|XP_002992766.1| hypothetical protein SELMODRAFT_430934 [Selaginella moellendorffii]
 gi|300139411|gb|EFJ06152.1| hypothetical protein SELMODRAFT_430934 [Selaginella moellendorffii]
          Length = 208

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 23/60 (38%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I  +  + +   G  + V +   I +++++E + Q    K  +    L   +  +  +
Sbjct: 141 SNIPAVAPSSESSIGQTKNVSIKRFIVKDSVEERMQQVQARKQGLIARALTDEEVRSARI 200


>gi|240169377|ref|ZP_04748036.1| helicase domain-containing protein [Mycobacterium kansasii ATCC
           12478]
          Length = 955

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    +        P L         G+NLQ G   +V + L W+   H+Q   RI  
Sbjct: 526 PEEREERVDALTAHDGPRLLIATDCLSEGINLQEGFTAVVHYDLAWNPTRHEQREGRID- 584

Query: 154 TRQRQAGFKRAV--FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               + G    V   V Y    N ID +VL+ L  +      
Sbjct: 585 ----RFGQGAPVVRTVTYFGEDNGIDGIVLEVLIRRHKNIQR 622


>gi|315187180|gb|EFU20937.1| helicase domain protein [Spirochaeta thermophila DSM 6578]
          Length = 87

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +++ + +  +    +Q I R+      + G    V     + +++++  VL+ L  K  +
Sbjct: 1   MIINYDIPCNPMRLEQRIGRVD-----RIGQTHTVRAINFVFEDSVEHRVLEVLEEKLAV 55

Query: 191 Q 191
            
Sbjct: 56  I 56


>gi|242216384|ref|XP_002474000.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726865|gb|EED80801.1| predicted protein [Postia placenta Mad-698-R]
          Length = 349

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                  +      +  +    +  +   +   + +L                 NIL+  
Sbjct: 150 QMYGIEYETLTGTMSGRQRAEALHNFMQSDAKGVRVLVLSNVGAVGFNI--ACANILIII 207

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              W  ++  Q+I R+   R       + V VY LIA+NT D  +      KS + +  +
Sbjct: 208 DTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFDKSIMHNAFM 262

Query: 196 NALKK 200
            + + 
Sbjct: 263 GSSRA 267


>gi|159469426|ref|XP_001692864.1| SNF2 family chromodomain-helicase [Chlamydomonas reinhardtii]
 gi|158277666|gb|EDP03433.1| SNF2 family chromodomain-helicase [Chlamydomonas reinhardtii]
          Length = 3365

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 47/181 (25%), Gaps = 38/181 (20%)

Query: 22   AFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
            A N      +   QLA        ++        K   +               Y   + 
Sbjct: 1289 ASNKLVVLDRMLRQLA-----ARGQRVIVLSQSAKTLDVLE------------QYASRAF 1331

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--------------LLFAHPASCGHGLNLQ 126
                               TI  +N                   L+     S G G NL 
Sbjct: 1332 GPGAAVRIDSSTPSAARHATIAAFNAAVSRADAANGPAADAAPFLVLMTTRSFGLGTNLP 1391

Query: 127  YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                 ++F S W         ++   + R  + G    + VY L A+ T++E +L     
Sbjct: 1392 AVSAAVIFDSDWH------PRLDMQALRRAYRLGESGRLAVYRLYARGTVEERLLTLAER 1445

Query: 187  K 187
            +
Sbjct: 1446 R 1446


>gi|159898481|ref|YP_001544728.1| helicase domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891520|gb|ABX04600.1| helicase domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 968

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            + ++    I E +     LL A       G+NLQ   N ++ + L W+    +Q   R+
Sbjct: 536 HSEEERESLIAELSASPRRLLVAT-DCLSEGINLQEAFNAVIHYDLPWNPNRLEQREGRV 594

Query: 152 GVTRQRQAGFKRAVFVYYLI--AQNTIDELVLQRLRTKSTIQDLLLN 196
                 + G    V    L+    N IDE V++ L  K+      L 
Sbjct: 595 D-----RYGQPAPVVRMALVRGEDNPIDEAVMRVLLRKAVTIHRTLG 636


>gi|38637975|ref|NP_942949.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527313|gb|AAP86063.1| putative helicase superfamily II [Ralstonia eutropha H16]
          Length = 1037

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 24/208 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           + Y   ++     ++G++       ++       AN   +  +          K +A+  
Sbjct: 797 QWYRDVRK-----VEGKSNNLIAILARIRAVHFAANYPQHGVDGVGALGQLTSKQRAVIE 851

Query: 62  -------------IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
                        +  +      ++A    +                +     + +  G 
Sbjct: 852 RLEAIAGEGKQAILFAENPGVINLIASQLKAKGVETVPFHGGIPIAKRVADKDKRFVGGT 911

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              L    AS   G NL    + ++F+   W        IE   + R  +   K  + V 
Sbjct: 912 ATGLLCTKASGRAGYNLPN-ADYVLFYDRSWTW-----RIEYQAMRRALRWNRKGQLKVV 965

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Y     ++D    Q +  K    +  L+
Sbjct: 966 YFHLPGSLDIYQDQMVAHKRDAMEAGLD 993


>gi|323507972|emb|CBQ67843.1| related to SNF2 family helicase/ATPase [Sporisorium reilianum]
          Length = 1877

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--------FPQGRTLDKD 97
              W       I  L+  + +      +V  H+   L  ++ A           G    + 
Sbjct: 1527 GDWSGKISGLIVDLKARLSQDATHKAVVFSHWPKMLTFVRDALVQNDVTAVVFGGNEARQ 1586

Query: 98   PCTIQE-WNEGKIPLLFAHPASCGHGLNLQ-YGGNILVFFSLWWDLEEHQQMIERIGVTR 155
               ++   ++  + ++     +      L     ++        D        E   V R
Sbjct: 1587 AEALRAIRDDDHVHVILVPFRASAGAAGLTLTSCDLAYLMEPALDAAL-----EAQAVGR 1641

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              + G +R   +  +  ++TI++ V++    +
Sbjct: 1642 IHRIGQRRETTIIRVKMKDTIEDAVMRIADER 1673


>gi|240276209|gb|EER39721.1| SNF2 family helicase [Ajellomyces capsulatus H143]
          Length = 1198

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 10/140 (7%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPAS 118
            ++II                 L    + +            +  +NE   + +L      
Sbjct: 933  KIIIFYEGNNTGFYIAEGLELLGVEFRIYANTLKTKTRSEYLSLFNETETVRVLLMDLRQ 992

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              HGL++    + +   +  WD        E   + R  +    + V+V  L+ ++ ++ 
Sbjct: 993  AAHGLHI-ACASRVFIVNPIWDP-----NFESQAIKRAHRISQNKPVYVETLVLKD-VEC 1045

Query: 179  LVLQRLRTKSTIQDLLLNAL 198
             +  R   K  + D  ++ +
Sbjct: 1046 RIATR--EKDPLDDRTMSDI 1063


>gi|260101489|ref|ZP_05751726.1| Snf2 family protein [Lactobacillus helveticus DSM 20075]
 gi|260084703|gb|EEW68823.1| Snf2 family protein [Lactobacillus helveticus DSM 20075]
          Length = 411

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 21/137 (15%)

Query: 2   KQYHKFQRELYCDL---QGENIEAFN--SASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y    ++L  +L        +  +    ++  K  ++        E  H    +  K+
Sbjct: 277 ELYKLQTQKLIAELSCQGDAEFKRAHFEIFAQITKLREICCDPHLLYENYH---GNSGKL 333

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW 104
            A   +I+    N   I++   F S L  +Q    +               +    I ++
Sbjct: 334 IATIDLIKANLENGHKILLFSQFTSMLEIIQNKLRKLKVPIFVITGATAKKERQDKIHQF 393

Query: 105 NEGKIP-LLFAHPASCG 120
           N    P +      + G
Sbjct: 394 NSLDKPAIFLISLKAGG 410


>gi|225563147|gb|EEH11426.1| DNA repair protein rad8 [Ajellomyces capsulatus G186AR]
          Length = 2156

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+       +  +L  H              N ++FF   +   ++         + R
Sbjct: 2026 IAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYNSGMAQAIGR 2085

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R+ G ++ V +Y+ +A  TI+  + +
Sbjct: 2086 SRRYGQQKHVHIYHFLALKTIEVNIFE 2112


>gi|238588204|ref|XP_002391661.1| hypothetical protein MPER_08877 [Moniliophthora perniciosa FA553]
 gi|215456617|gb|EEB92591.1| hypothetical protein MPER_08877 [Moniliophthora perniciosa FA553]
          Length = 249

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 38/151 (25%)

Query: 50  EVHDEKIKALEVII--EKANAAPIIVAYHFNS----------DLARLQKAFPQGRTLDKD 97
            +   K++AL  ++   +     ++V   F            +             +D  
Sbjct: 31  FLDSGKVQALLKLLKIYEDEGRKVLVFSQFTQVLDILELILKERNIKYLMLTGSTPVDVR 90

Query: 98  PCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              + E+  +  I        + G G+NL                            +  
Sbjct: 91  QSLVDEFTEDQSISAFLLSTKAGGMGINLT-------------------------AASVV 125

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              G KR V V  LI + TI+E + +    K
Sbjct: 126 IMIGQKRDVDVVKLITRXTIEEDITELGEMK 156


>gi|300865065|ref|ZP_07109891.1| Helicase domain protein [Oscillatoria sp. PCC 6506]
 gi|300336929|emb|CBN55041.1| Helicase domain protein [Oscillatoria sp. PCC 6506]
          Length = 1050

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 13/136 (9%)

Query: 47  HWKEVHDEKIKALEVIIEKANAAPIIVAYHF----NSDLARLQKAFPQGRTLDKDPCTIQ 102
           H +   + K     VII     A     Y+                  G   +       
Sbjct: 512 HTQIKPNGKWSKERVIIFTEYRATQKWLYNLLAAERLIEGDRLMTLYGGMVSEDREKVKA 571

Query: 103 EWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +        + +L A   +   GL+LQ   + L+ + + W+    +Q   RI    Q+ 
Sbjct: 572 AFQTDPDISPVRILLAT-DAASEGLDLQNYCSKLIHYEIPWNPNRMEQRNGRIDRHGQK- 629

Query: 159 AGFKRAVFVYYLIAQN 174
               + V VY+ + ++
Sbjct: 630 ---AQEVLVYHFVGKD 642


>gi|324502242|gb|ADY40988.1| DNA repair and recombination protein RAD54B [Ascaris suum]
          Length = 415

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 44/176 (25%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKE-----------------------------VHDEKI 56
            +      +L N      +    K                              V   K+
Sbjct: 228 LAIIDMLRKLCNHPSILYQSLTSKHGAFNSCESTLNATVLRAFPSSFEPNCSTIVDSGKL 287

Query: 57  KALEVIIE--KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEW 104
                ++   +     ++V  +F   L  L +                   +    + E+
Sbjct: 288 SVFVKMMVSLRETNEKVVVVSNFTKTLDMLSEVCKGIFCTVTRLDGSVVPHRRMQLVDEF 347

Query: 105 NEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
           N   +P  +      + G GLNL  G + LV F   W+     Q + RI    Q+ 
Sbjct: 348 NTSSLPNHVFLLSTKAVGVGLNL-IGASRLVLFDSDWNPAFDVQAMARIWRDGQKN 402


>gi|328949537|ref|YP_004366873.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328449861|gb|AEB15576.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2135

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 92   RTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T +K      E+N+ K PL +     +   G++L     ++   SL W+  E  Q   R
Sbjct: 1431 NTPEKKEKITAEFNDPKNPLKIIIGGKNTSEGIDLNGNSFVMYNCSLGWNPSETIQAEGR 1490

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            I      Q      V + Y +  ++ID L+ Q+   K +  + L
Sbjct: 1491 IWRQGNMQG----HVHIVYPVMTDSIDSLLYQKHDEKRSRINDL 1530


>gi|167519020|ref|XP_001743850.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777812|gb|EDQ91428.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1673

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Query: 3    QYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +Y +   +R+L   L        + A       ++ANG V        K +  E+    +
Sbjct: 1427 EYSQLLMRRDLEDRLGQAEGSDLSGA-------RVANGGVLGAGVPEAKRLMREQHMPYK 1479

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
             I+  A     +   +F        KA    R+  KD   I+ + +              
Sbjct: 1480 AIVYSAQRN-TLDNTYFRLRSFFGDKACAMYRSQQKDVHEIRRFRQDDQCAFLCLAQEGA 1538

Query: 121  HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
             GL+L +  +I +            + +E   + R  + G  + V V  L+   T+D+L+
Sbjct: 1539 VGLDLHFVTHIFLLEEP------VDKSLEAQVIARAWRIGCNQVVHVQKLVMAETVDDLL 1592

Query: 181  LQR 183
             + 
Sbjct: 1593 WRI 1595


>gi|115812720|ref|XP_782461.2| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
 gi|115976089|ref|XP_001191838.1| PREDICTED: similar to MGC81081 protein [Strongylocentrotus
           purpuratus]
          Length = 361

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 21/152 (13%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +RE+Y  +  +      +       +Q                +   KIK +   +E+ +
Sbjct: 181 EREIYDQVVQQYRSTPKTLIILQHLMQCCGHLSLVQPSYQPSFL-STKIKFVIDQLEEIH 239

Query: 68  A-------APIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWNEGK-- 108
                      ++   F   L               +  +     K    + ++N     
Sbjct: 240 DEGPADSPMKSVIVSQFTEMLDVVASHLSWAGFEYWSIRRAIPPKKRSEAMDDFNNNPRG 299

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             ++     +   GLNL  GGN L F  +   
Sbjct: 300 REVMLVSLKAGRVGLNL-IGGNHLFFLDMHCS 330


>gi|3599409|gb|AAC62714.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
          Length = 502

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K   T+ ++ +G   +L         GL++    N+++F+        + Q   R
Sbjct: 383 GLKQRKQVETVAKFRDGGYDVLV-STRVGEEGLDI-SEVNLVIFYDNVPSSIRYVQRRGR 440

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G     +           L+A+ TIDE      R K +    +   + +
Sbjct: 441 TGRKDAGRL--------IVLMAKGTIDEAYYWIGRRKMSAAKGMGERMNR 482


>gi|77407164|ref|ZP_00784151.1| SNF2 family protein [Streptococcus agalactiae H36B]
 gi|77174227|gb|EAO77109.1| SNF2 family protein [Streptococcus agalactiae H36B]
          Length = 769

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T +K     ++ N G++ +L A     G GLN+Q     +    + W   +  Q
Sbjct: 684 FVHDANTDEKKNSLSRKVNSGEVRILMASTEKGGTGLNVQSRMKAVHHLDVPWRPSDIVQ 743

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              R+      Q    + V +Y+ I + 
Sbjct: 744 RNGRLIR----QGNMHQEVDIYHYITKG 767


>gi|325266725|ref|ZP_08133401.1| type III restriction enzyme [Kingella denitrificans ATCC 33394]
 gi|324981834|gb|EGC17470.1| type III restriction enzyme [Kingella denitrificans ATCC 33394]
          Length = 432

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 14/73 (19%)

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI--------- 190
           +    +Q I R+      + G K  V     + ++T++  V Q L  K  +         
Sbjct: 52  NPMRIEQRIGRVD-----RIGQKHVVRAINFVLEDTVEHRVRQVLEAKLEVIAQEFGVDK 106

Query: 191 QDLLLNALKKETI 203
              ++++++ + I
Sbjct: 107 AADVMDSVEADPI 119


>gi|303241343|ref|ZP_07327847.1| helicase domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591076|gb|EFL60820.1| helicase domain protein [Acetivibrio cellulolyticus CD2]
          Length = 939

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G +  +    ++++   + P+ +         G+NL Y  + L+ F + W L   QQ 
Sbjct: 476 YGGMSDSEQQKVVEDFGRVEAPVRILVASDVASQGINLHYLSHRLIHFDIPWSLMVFQQR 535

Query: 148 IERIGVTRQRQAGFKRAVFV--YYLIAQNTIDELVLQRLRTKSTIQ 191
             RI    Q +    R + +       +   D  V++ L  K    
Sbjct: 536 NGRIDRYGQHEKPDIRYMTINSKNYKVKG--DMRVIEILVKKEEQA 579


>gi|86605043|ref|YP_473806.1| helicase [Synechococcus sp. JA-3-3Ab]
 gi|86553585|gb|ABC98543.1| putative helicase [Synechococcus sp. JA-3-3Ab]
          Length = 964

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 13/137 (9%)

Query: 68  AAPIIVAYHFNSDLARLQ-------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
               +    + +D  R                  ++    I E    +  +L A      
Sbjct: 489 WCRYVATAEYLADHLRQHLGSATQVACVTGRMGDEEREAKIAEMAVDQPRVLVAT-DCLS 547

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDEL 179
            G+NLQ     ++ + L W+    +Q   R+    QR       V V     ++  +D +
Sbjct: 548 EGINLQEKLTAVIHYDLPWNPNRLEQREGRVDRYGQRAPR----VKVIRFFGRDNPVDGV 603

Query: 180 VLQRLRTKSTIQDLLLN 196
           VL+ L  K       L 
Sbjct: 604 VLKVLLNKVREIRRTLG 620


>gi|254561064|ref|YP_003068159.1| DNA adenine methyltransferase; methylase and helicase domains
            [Methylobacterium extorquens DM4]
 gi|254268342|emb|CAX24284.1| putative DNA adenine methyltransferase; putative methylase and
            helicase domains [Methylobacterium extorquens DM4]
          Length = 1698

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  +       ++N GK+ +L     + G G+N+Q     L    + W   + +Q
Sbjct: 1339 YMQDHKKSEAKQRLFNDFNAGKVRILLGSSETMGTGVNVQLRLKALHHLDVPWLPSQIEQ 1398

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q      + ++      ++D  + Q    K+      L+ 
Sbjct: 1399 REGRIVR----QGNQHDEIDIFAYATLGSLDATMWQNNERKARFIAAALSG 1445


>gi|296813227|ref|XP_002846951.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
 gi|238842207|gb|EEQ31869.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
          Length = 1955

 Score = 46.7 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 37   NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAP----IIVAYHFNSDLA-----RLQKA 87
                Y  +++   +    K  A+  +++     P    +++   F   +           
Sbjct: 1744 CHFDYNAQDRELAKYGSSKFTAVINLLQDTKKIPGDDQVLLFIQFPELMDAAATALQLAN 1803

Query: 88   FPQGRTLDKDPC---TIQEWNEGK----IPLLFAHP-ASCGHGLNLQYGGNILVFFSLWW 139
             P       D      I E+  GK      +L  +       GLNLQ   +I+ F  L  
Sbjct: 1804 IPHIVVQPGDRTPGGKISEFQNGKETVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVA 1863

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              +          + R R+ G  + V +Y+++A  T++  + +  R +  +   
Sbjct: 1864 RSQYDYDSGMAQAIGRSRRYGQLKHVHIYHVLALRTVEVNIFE-QRRRQYLAKR 1916


>gi|270001791|gb|EEZ98238.1| hypothetical protein TcasGA2_TC000677 [Tribolium castaneum]
          Length = 1345

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 14/146 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PC 99
             ++    +  ++ +  +  +     I++   +   L+ +++A  +     +         
Sbjct: 1168 GNYSTKVESIVRLILKLRLEDEDVKILLFSTWIPVLSYIREALTKNSVTSELITSGNLEK 1227

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+++ +    I +L       G GLNL      ++      +        E   + R  
Sbjct: 1228 QIEKFKDADQNITVLLLPINLGGKGLNL-IEATHVILTEPLLNPG-----EELQAIGRVH 1281

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQR 183
            + G  R   V+    ++TI+E + + 
Sbjct: 1282 RIGQTRPTVVHKFFIKHTIEESIQKA 1307


>gi|256819717|ref|YP_003140996.1| DNA methylase N-4/N-6 domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256581300|gb|ACU92435.1| DNA methylase N-4/N-6 domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 753

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +  G+  +L         G+N Q   +  +F SL +  E          V R  + G  +
Sbjct: 336 FANGEFRVLVTKKKIAQFGMNFQN-CHNQIFASLDFSFEGTY-----QAVRRSYRFGQTK 389

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V +Y  I  +T++  V Q    K      + + + K
Sbjct: 390 EVNIY-FITTDTME-NVKQTRERKEQQFKEMQDQMNK 424


>gi|302764302|ref|XP_002965572.1| hypothetical protein SELMODRAFT_143427 [Selaginella moellendorffii]
 gi|300166386|gb|EFJ32992.1| hypothetical protein SELMODRAFT_143427 [Selaginella moellendorffii]
          Length = 1112

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 22/164 (13%)

Query: 39   AVYYDEEKHWKEVHDEKIKALEVIIEKANAA------PIIVAYHFNSDLARLQKAFPQG- 91
             +  D    W+     K+  L   +              IV   F   ++ ++    +G 
Sbjct: 926  YIQEDWHSEWQATSSSKVSYLVERLRGLQQENGKLPEKAIVFSQFLEHISAIEMQLTKGG 985

Query: 92   ---------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
                             +++ + E    ++    +S   GL+L +  ++ +   +W    
Sbjct: 986  IEHAGMYSPMPAASKMKSLRTFQENPKCVVLLMDSSSALGLDLSFVTHVFLMEPIWD--- 1042

Query: 143  EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               + IE   V+R  + G  R V V  L    TI+E +L  L+ 
Sbjct: 1043 ---RSIEEQVVSRAHRMGATRPVLVETLAMAGTIEEQMLGFLQR 1083


>gi|91202107|emb|CAJ75167.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 918

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
           +  G    K    I++    +   L     +   GLNLQ  G ++    L W+    +Q 
Sbjct: 744 YENGIYHRKSKEDIKKMVRTRQIKLLFGTDAASEGLNLQTLGTLIN-LDLPWNPTRLEQR 802

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             RI    Q +      V++Y +  ++++++ V + L  +      L  
Sbjct: 803 KGRIQRIGQERD----EVWIYNMRYKDSVEDKVHRLLSNRLKNIQDLFG 847


>gi|257093732|ref|YP_003167373.1| helicase domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046256|gb|ACV35444.1| helicase domain protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 946

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFP------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              I   H+ +D  R                  +    +    E +  +L A       G
Sbjct: 487 CRYIATAHYVADALRKAHKSHLVQAITGEFAASEREAAVDAMGEAEKRILVAT-DCLSEG 545

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVL 181
           +NLQ     +V + L W+   H+Q   R+    Q+     R V    L  ++  +D  VL
Sbjct: 546 VNLQNLFTAVVHYDLSWNPTRHEQREGRVDRFGQK----AREVRTTMLYGRDNPVDGAVL 601

Query: 182 QRLRTKST 189
             +  K+ 
Sbjct: 602 HVILRKAE 609


>gi|269957110|ref|YP_003326899.1| helicase domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305791|gb|ACZ31341.1| helicase domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 1095

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 95  DKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           ++   T   +N       I +L A  A+   G++LQ   + LV F + ++    +Q I R
Sbjct: 605 EERELTRARFNADPAKESIRVLVATDAAG-EGIDLQAFCHRLVNFDVPFNPSRLEQRIGR 663

Query: 151 IGVTRQRQAGFKRAVFVYYLI---AQNTI--DELVLQRLRTKSTIQDLLLNALK 199
           I      + G + A  V+  +      T   D   ++R+  K       L ++ 
Sbjct: 664 ID-----RYGQQHAPEVFQFLPDATSGTFAGDMDFMRRIAEKVANVADDLGSVN 712


>gi|254572662|ref|XP_002493440.1| Putative helicase [Pichia pastoris GS115]
 gi|238033239|emb|CAY71261.1| Putative helicase [Pichia pastoris GS115]
 gi|328354735|emb|CCA41132.1| Uncharacterized ATP-dependent helicase YLR247C [Pichia pastoris CBS
            7435]
          Length = 1548

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 12/186 (6%)

Query: 3    QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
             Y     E   ++Q   I+    +   +   Q        ++  + + V   +   L  +
Sbjct: 1310 IYKPMNDETLQEIQDIPIQKMYGSKVDLIVKQA---LWLKNKISNVQIVVFSQWLELLEV 1366

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
            +  A     +      + L   + +   GR  +K        ++  I     +  +   G
Sbjct: 1367 LAIALKQNGLKCIGAKNSLKLEKGS---GRNKEKLTDVELFKSDPSITCFLLNARAQAAG 1423

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            L L    + +       +     Q I RI      + G +    ++    ++T++E VL+
Sbjct: 1424 LTLVN-ASHVFLCEPLVNTALELQAISRI-----HRIGQQHKTTIWMFTIKDTVEESVLR 1477

Query: 183  RLRTKS 188
                K 
Sbjct: 1478 LSTRKR 1483


>gi|168244020|ref|ZP_02668952.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451781|ref|YP_002048512.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410085|gb|ACF70304.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337051|gb|EDZ23815.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 952

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKSQSPLRLLICSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|302852672|ref|XP_002957855.1| hypothetical protein VOLCADRAFT_48760 [Volvox carteri f.
           nagariensis]
 gi|300256834|gb|EFJ41092.1| hypothetical protein VOLCADRAFT_48760 [Volvox carteri f.
           nagariensis]
          Length = 52

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
            N +       D    Q       V R  + G  R V V  L+   T++E+V++ L+
Sbjct: 1   ANHVFLLEPSLDPAIEQ-----QAVARVHRIGQTREVTVTRLLVDGTVEEVVMRMLK 52


>gi|303285868|ref|XP_003062224.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226456635|gb|EEH53936.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 625

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/185 (7%), Positives = 48/185 (25%), Gaps = 41/185 (22%)

Query: 2   KQYHKF---QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------ 52
           + Y++    ++        ++       +  ++  ++ N     D               
Sbjct: 442 RAYYRMIYEKQVHVLMEGNKSKNVPQLRNLCMELRKVCNHPFLCDGAAAKAAADAAAAGV 501

Query: 53  ------------------DEKIKALEVIIE--KANAAPIIVAYHFN----------SDLA 82
                               K+  +  ++   K+    +++   F             + 
Sbjct: 502 APPTPPAPPTSLDLLTGASGKMVLVAKLLAKLKSEGKKVLIFSQFTIVLDILEDYLGMMK 561

Query: 83  RLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
              +      +       I  +N +G+  +      + G G+ L    +  + +   W+ 
Sbjct: 562 YEYERLDGSTSQADRQAGIDRFNQDGQGFVYLLSTRAGGMGITLTA-ADTAIIYDSDWNP 620

Query: 142 EEHQQ 146
           +   Q
Sbjct: 621 QNDLQ 625


>gi|298383565|ref|ZP_06993126.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263169|gb|EFI06032.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1657

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1278 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1337

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V V     + T+D      L+ K    + +
Sbjct: 1338 QRNGRAVRKGNTVKLWGGNVVDVVIYGTEKTLDAYKFNLLKNKQMFINQI 1387


>gi|258513251|ref|YP_003189507.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635154|dbj|BAI01128.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256638209|dbj|BAI04176.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-03]
 gi|256641263|dbj|BAI07223.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-07]
 gi|256644318|dbj|BAI10271.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-22]
 gi|256647373|dbj|BAI13319.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-26]
 gi|256650426|dbj|BAI16365.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-32]
 gi|256653417|dbj|BAI19349.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256656470|dbj|BAI22395.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-12]
          Length = 1708

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +L    A+ G G+N Q     L    + W + +  Q   RI      Q      
Sbjct: 1345 NAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLVADIMQREGRIVR----QGNQHDE 1400

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +Y    Q ++D    Q L  K     L ++  +
Sbjct: 1401 VEIYAYAQQGSVDATNWQLLERKMRFIGLAMSGDR 1435


>gi|115442277|ref|NP_001045418.1| Os01g0952200 [Oryza sativa Japonica Group]
 gi|57899941|dbj|BAD87853.1| putative rad8 [Oryza sativa Japonica Group]
 gi|113534949|dbj|BAF07332.1| Os01g0952200 [Oryza sativa Japonica Group]
 gi|218189747|gb|EEC72174.1| hypothetical protein OsI_05224 [Oryza sativa Indica Group]
 gi|222619881|gb|EEE56013.1| hypothetical protein OsJ_04781 [Oryza sativa Japonica Group]
          Length = 1298

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 20/136 (14%)

Query: 63   IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD-----------KDPCTIQEWNEGKIPL 111
            +       +I+   F   +  +++    G               K     +  ++     
Sbjct: 1121 LPHTMPDKVIIFSQFLEHIHVIEQQLTIGGITYAGMYSPMPLGSKRSSLTKFKDDPACMA 1180

Query: 112  LFAHPASCGHGLNL-QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            L          L L     + +             + +E   ++R  + G  R +FV  L
Sbjct: 1181 LVM---DGTAALGLDLSFVSYVFLMEP-----IWDRSMEEQVISRAHRMGATRPIFVETL 1232

Query: 171  IAQNTIDELVLQRLRT 186
              + TI+E +L+ L+ 
Sbjct: 1233 AMRGTIEEQMLKLLQD 1248


>gi|254885063|ref|ZP_05257773.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837856|gb|EET18165.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1665

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V V     + T+D      L+ K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDVVIYGTEKTLDAYKFNLLKNKQMFINQI 1395


>gi|170021860|ref|YP_001726814.1| helicase domain-containing protein [Escherichia coli ATCC 8739]
 gi|169756788|gb|ACA79487.1| helicase domain protein [Escherichia coli ATCC 8739]
          Length = 952

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++++ + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 KTVEDFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|325680385|ref|ZP_08159938.1| helicase C-terminal domain protein [Ruminococcus albus 8]
 gi|324107908|gb|EGC02171.1| helicase C-terminal domain protein [Ruminococcus albus 8]
          Length = 943

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSL 137
               +       G T  +    ++E+   + P+ +         GLNL Y  + L+ F +
Sbjct: 466 HMSDKQVVEISGGMTDMEQQRVVEEFGRTEAPVRILVASDVASEGLNLHYLSHRLIHFDI 525

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA------QNTIDELVLQRLRTKSTIQ 191
            W L   QQ   RI    Q     KR    Y LI+      +   D  +++ L  K    
Sbjct: 526 PWSLMVFQQRNGRIDRYGQ----EKRPDIRYMLISSKNERIKG--DMRIIRILVEKEEQA 579


>gi|218191620|gb|EEC74047.1| hypothetical protein OsI_09041 [Oryza sativa Indica Group]
          Length = 952

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 51/191 (26%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------------ 45
           +    L  E  +     +      +L N      +                         
Sbjct: 512 KNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFS 571

Query: 46  ----------KHWKEVHDEKIKALEVIIEKAN---AAPIIVAYHFNSDLARLQKAFPQ-- 90
                       W E+   K+  L  ++   +      I++  ++   L    +   +  
Sbjct: 572 GRSGSWTGGGGMWVEL-SGKMHVLARLLGHLHLKTDDRIVLVSNYTQTLDLFAQLCRERR 630

Query: 91  --------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
                     +++K    + ++N+      +      + G GLNL  GGN L+ F   W+
Sbjct: 631 YPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWN 689

Query: 141 LEEHQQMIERI 151
               +Q+ +R 
Sbjct: 690 PANDKQVYQRQ 700


>gi|319644055|ref|ZP_07998614.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317384403|gb|EFV65371.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1665

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        ++ N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKRLFEDMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V V     + T+D      L+ K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDVVIYGTEKTLDAYKFNLLKNKQMFINQI 1395


>gi|315050244|ref|XP_003174496.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
 gi|311339811|gb|EFQ99013.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
          Length = 2118

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 101  IQEWNEGK----IPLLFAHP-ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            I E+  GK      +L  +       GLNLQ   +I+ F  L    +          + R
Sbjct: 1982 ISEFQNGKESVKSKVLILNLGDVTASGLNLQNANHIIFFGPLVAQSQYDYDSGMAQAIGR 2041

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             R+ G  + V +Y+++A  T++  + +  R +  +   
Sbjct: 2042 SRRYGQLKHVHIYHVLALKTVEVNIFE-QRRRQYLAKR 2078


>gi|91076936|ref|XP_975165.1| PREDICTED: similar to DNA repair protein RAD16 [Tribolium castaneum]
          Length = 1188

 Score = 46.3 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 14/146 (9%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD------PC 99
             ++    +  ++ +  +  +     I++   +   L+ +++A  +     +         
Sbjct: 1008 GNYSTKVESIVRLILKLRLEDEDVKILLFSTWIPVLSYIREALTKNSVTSELITSGNLEK 1067

Query: 100  TIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+++ +    I +L       G GLNL      ++      +        E   + R  
Sbjct: 1068 QIEKFKDADQNITVLLLPINLGGKGLNL-IEATHVILTEPLLNPG-----EELQAIGRVH 1121

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQR 183
            + G  R   V+    ++TI+E + + 
Sbjct: 1122 RIGQTRPTVVHKFFIKHTIEESIQKA 1147


>gi|255656169|ref|ZP_05401578.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 60

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            K +V V  LIA+ TI+E +++   +K  + +  +N 
Sbjct: 3   QKNSVQVIKLIAKGTIEEKIIKLQESKKELINQFING 39


>gi|325104318|ref|YP_004273972.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973166|gb|ADY52150.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 1812

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +   + +   +    I   N+GKI +LF   +  G G+N Q     +      W   
Sbjct: 1405 HEVRFIQEAKNDKQRRELINGMNDGKIRVLFGSTSMLGTGVNAQKRAVAVHHLDTPWRPS 1464

Query: 143  EHQQMIERIGVTRQ--RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            +  Q   R         +   +  V V     + ++D      L  K    D L
Sbjct: 1465 DLAQRDGRAIRKGNEIAKFFAENKVAVIIYAVEKSLDSYKFNLLYNKQLFIDQL 1518


>gi|219883306|ref|YP_002478467.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
 gi|219862151|gb|ACL42491.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
          Length = 1606

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G N+Q     LV     W   + +Q   RI      Q      V
Sbjct: 1208 SGQIAVLMGSTSKMGVGTNIQKRAVHLVDMDAPWRPSDVEQRHGRILR----QGNQNPEV 1263

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             +  ++ + + D  + Q L  KS   + ++
Sbjct: 1264 RISQVVTKESFDSFMWQGLERKSRFINQIM 1293


>gi|129282525|gb|ABO30254.1| SNF2 family N-terminal domain protein [Triticum aestivum]
          Length = 69

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 21/50 (42%)

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +E     +  + G  + +     + ++T++E +LQ    K  + D  +  
Sbjct: 1   VESQAQDQIHRIGQFKPIRSTRFVIKDTVEERILQLQEKKQLVFDGTVGD 50


>gi|108797789|ref|YP_637986.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119866881|ref|YP_936833.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|108768208|gb|ABG06930.1| helicase-like protein [Mycobacterium sp. MCS]
 gi|119692970|gb|ABL90043.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 1201

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 91  GRTLDKDPCTIQ-EWNEGKIPL---LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           G T  +    I+  +N         +     + G G++LQ   + LV F + ++    +Q
Sbjct: 711 GSTDGEQREVIRARFNTDPSREKLRILLATDAAGEGIDLQDYCHRLVNFDIPFNPNRLEQ 770

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQN-----TIDELVLQRLRTK 187
            I RI      + G      + +    +     T D  +L R+  K
Sbjct: 771 RIGRID-----RYGQTHDPEIRHFATDDEKSQLTRDVDLLARVAKK 811


>gi|254773730|ref|ZP_05215246.1| helicase domain-containing protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1136

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G    +     +E+ + +   +     + G GLNLQ   +++V + L W+    +Q  
Sbjct: 527 HGGVRRLERRVITEEFTKNRGCQILLATDAAGEGLNLQA-AHLMVNYDLPWNPNRIEQRF 585

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            RI      + G +    ++ L+A NT +  V 
Sbjct: 586 GRI-----HRIGQEEVCRLWNLVASNTREGDVF 613


>gi|147858109|emb|CAN81394.1| hypothetical protein VITISV_043258 [Vitis vinifera]
          Length = 203

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 43/160 (26%), Gaps = 25/160 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV---------- 51
           + Y       Y  L        +  +  ++  +L       +  +   E           
Sbjct: 45  EYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDATEAYKLLLE 104

Query: 52  HDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPC 99
              K++ L+ ++   K     +++   F   L  L+      +             +   
Sbjct: 105 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQV 164

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSL 137
            I  +N              + G G+NL    + ++ +  
Sbjct: 165 RIDRFNAKNSSRFCFLLSTRAGGLGINL-ATADTVIIYDR 203


>gi|329113910|ref|ZP_08242678.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
 gi|326696776|gb|EGE48449.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
          Length = 1708

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 105  NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            N G+  +L    A+ G G+N Q     L    + W + +  Q   RI      Q      
Sbjct: 1345 NAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLVADIMQREGRIVR----QGNQHDE 1400

Query: 165  VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            V +Y    Q ++D    Q L  K     L ++  +
Sbjct: 1401 VEIYAYAQQGSVDATNWQLLERKMRFIGLAMSGDR 1435


>gi|240275731|gb|EER39244.1| DNA repair protein RAD8 [Ajellomyces capsulatus H143]
          Length = 219

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 101 IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
           I E+       +  +L  H              N ++FF   +   ++         + R
Sbjct: 89  IAEFQTRAEKVESKVLILHLGDVSASGLNLQNANHVIFFHPLFTKSQYDYNSGMAQAIGR 148

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            R+ G ++ V +Y+ +A  TI+  + +  R +  +   
Sbjct: 149 SRRYGQQKHVHIYHFLALKTIEVNIFE-QRRRERLVKR 185


>gi|119855183|ref|YP_935786.1| helicase domain-containing protein [Mycobacterium sp. KMS]
 gi|119697900|gb|ABL94971.1| helicase domain protein [Mycobacterium sp. KMS]
          Length = 976

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T            +G++ +L       G G N+Q   + L      W     +Q
Sbjct: 631 FVHEATTAKAREALFAACRDGRVAVLLGSTPKVGIGTNVQNRLHSLHHVDPTWTAAAWEQ 690

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKETIH 204
              RI    QR         ++  +A+ T D  +   +  K+     L  ++   +E   
Sbjct: 691 RNGRI----QRNGNQHATAEIHSHVARGTFDAFMFGTVERKARGFAQLYRMDGQAREIED 746

Query: 205 V 205
           +
Sbjct: 747 I 747


>gi|225681023|gb|EEH19307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 2092

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+ +G    K  +L  H  +           N ++FF   +   ++         + R
Sbjct: 1962 ITEFQKGTEKVKSKVLILHLGNVSASGLNLQNANHVIFFHPLFAKSQYDYTSGMAQAIGR 2021

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R+ G ++ V +Y  +A  TI+  + +
Sbjct: 2022 SRRYGQQKHVHIYQFLALKTIEVNIFE 2048


>gi|322705986|gb|EFY97568.1| SNF2 family helicase/ATPase, putative [Metarhizium anisopliae ARSEF
            23]
          Length = 1444

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                  +    +   H  +   GLNL    + +       +     Q I R+      + 
Sbjct: 1264 IANFKEDPATEVFLLHARAHSSGLNLVN-ASHVFLCEPLLNTALELQAIARVD-----RI 1317

Query: 160  GFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G +    V+  +   T++E +      + 
Sbjct: 1318 GQQHETTVWLYLVSGTVEESIYNLSVQRR 1346


>gi|159482010|ref|XP_001699066.1| hypothetical protein CHLREDRAFT_177665 [Chlamydomonas reinhardtii]
 gi|158273129|gb|EDO98921.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 874

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 6/107 (5%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                     K    ++           A     G GLNL      +V      D     
Sbjct: 535 MCPIWTSYGSKVEAVVRRIKFVLGEDAAAKLKQGGAGLNLTE-AQHVVLVEPQLDPAA-- 591

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              E   V R  + G  R   V+  +  +T++E V +    ++   D
Sbjct: 592 ---EAQAVGRVHRIGQARPTHVHRFVVAHTVEEQVHRLADNRARGMD 635


>gi|302770637|ref|XP_002968737.1| hypothetical protein SELMODRAFT_440558 [Selaginella moellendorffii]
 gi|300163242|gb|EFJ29853.1| hypothetical protein SELMODRAFT_440558 [Selaginella moellendorffii]
          Length = 2037

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 26/165 (15%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           I A        K L       Y +++K    V + + K L  II+            +  
Sbjct: 771 IRASGKLELMHKML----SHFYLNKKKTLIIVQNTRSKQLMNIIDD-----------YLK 815

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     +G        ++  +N  +     L     +     N     + +  +  
Sbjct: 816 QQFGSYGRIERGMDAQVRQASLTRFNSQDSSCFALLLERGAATSIPNQLTAVDAVFIYDS 875

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            W+        +    T   +      V VY L +  T++E +L 
Sbjct: 876 DWNP-----WSD----TTCIRKLGLNNVTVYRLYSCLTVEEKILD 911


>gi|302797110|ref|XP_002980316.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
 gi|300151932|gb|EFJ18576.1| hypothetical protein SELMODRAFT_420032 [Selaginella moellendorffii]
          Length = 1527

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L+  G+ ++ F            +E   +    + G +    V+  I +NT++E + +  
Sbjct: 678 LRQMGSSILEFKENIQP-LLTPAVEAQAINLVHRIGQRLKTLVHRFIIRNTVEENIYKMN 736

Query: 185 RTKSTI 190
           + K+ +
Sbjct: 737 QQKTNL 742


>gi|47177046|ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5]
 gi|47115437|emb|CAG28490.1| putative methylase protein [Oligotropha carboxidovorans OM5]
          Length = 1550

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             GK+  L     + G G+N Q     L    + W   + +Q   RI      Q      V
Sbjct: 1213 AGKVRFLLGSSDTMGTGVNAQLRLRALHHLDVPWLPSQIEQREGRIVR----QGNQNDEV 1268

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             +Y    + ++D  + Q    K+      L+ 
Sbjct: 1269 DIYAYATEGSLDAQMWQNNERKARFIAAALSG 1300


>gi|56476788|ref|YP_158377.1| SNF2 family helicase [Aromatoleum aromaticum EbN1]
 gi|56312831|emb|CAI07476.1| helicase (Snf2 family) [Aromatoleum aromaticum EbN1]
          Length = 959

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 74  AYHFNSDLARLQKAFPQ--GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
              +   L R +        +T D     ++ + E    ++ A   +   G+NLQ+  ++
Sbjct: 468 QAIYKDWLKRHEGTDRITGSKTADTRAALVEHFKERG-KVMIAT-EAGAEGINLQF-CSL 524

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++ + L W+ +  +Q I R     Q+                N  D+ V + L  K  + 
Sbjct: 525 VINYDLPWNPQRIEQRIGRCHRYGQKFDVVVVNFV----DLGNEADKRVYELLSQKFQLF 580

Query: 192 DLLLNA 197
           + +  A
Sbjct: 581 EGVFGA 586


>gi|260434755|ref|ZP_05788725.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
           8109]
 gi|260412629|gb|EEX05925.1| superfamily II DNA/RNA helicase, SNF2 family [Synechococcus sp. WH
           8109]
          Length = 507

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 26/190 (13%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
              L     +A +  +      Q+A     +      + V   +               +
Sbjct: 317 RAQLGKVRRDAEH-LALLTSIRQIA---AEFKLPAAQQLVESLR----------RQGEAV 362

Query: 72  IVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++   F + L  LQ+          +   +   ++  + +G+   L A   +   G  L 
Sbjct: 363 VLFSGFVAPLQLLQQTLGGELLTGRQRPAERQASVDRFQQGQNDCLLATFGTGALGFTLH 422

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
                +V     W   +  Q  +R                 ++L      D+LV   L +
Sbjct: 423 R-ARHVVLLERPWTPGDLDQAEDRCHRLGMGDGL-----TCHWLQL-GAADQLVDGLLAS 475

Query: 187 KSTIQDLLLN 196
           K+   ++LL 
Sbjct: 476 KAERIEVLLG 485


>gi|224026703|ref|ZP_03645069.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
            18228]
 gi|224019939|gb|EEF77937.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
            18228]
          Length = 1659

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERTRKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V +     + T+D      LR K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 1395


>gi|119181862|ref|XP_001242109.1| hypothetical protein CIMG_06005 [Coccidioides immitis RS]
          Length = 832

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 20/131 (15%)

Query: 50  EVHDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQGRTLD----------- 95
           E    KI+AL  I+        +  +V   + S L  ++    +                
Sbjct: 645 EESSSKIQALIKILTAHGQAPGSKTVVFSQWTSFLDLIEPQLVKHNITFTRIDGKMSSTK 704

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +D       N+    ++ A    C  GLNL    N ++    WW        IE   V R
Sbjct: 705 RDVAMATLTNDPNCTVMLASLNVCSVGLNLVA-ANQVILTDSWWAPA-----IEDQAVDR 758

Query: 156 QRQAGFKRAVF 166
             + G KR   
Sbjct: 759 VYRLGQKRPTT 769


>gi|120610429|ref|YP_970107.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588893|gb|ABM32333.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 46.3 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              + LD+    I  + +G   LL   P   G G N Q   +  VF  + +   +     
Sbjct: 341 WGTQDLDEREDRIVGFGDGAFRLLSTKPVIAGAGCNFQRHCHREVFAGIGFKFRDFI--- 397

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               + R  + G  + V +  +  +   +  VL+ L+ K    D +
Sbjct: 398 --QAIHRVHRFGQTKPVRIDIIHTE--AEREVLRTLQEKWRQHDEV 439


>gi|154335774|ref|XP_001564123.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061157|emb|CAM38179.1| SNF2/RAD54 related DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 958

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +  D  +          + +    +  ++ G+  +      +C  G++L       VF 
Sbjct: 480 QWTRDHRKHAVRIDGRVPVQQRGDLLDAFHRGEARIAIIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D         R    R  + G +  V VYYL+
Sbjct: 539 ELPPDAA-----WMRQAEDRLHRPGQRDEVVVYYLL 569


>gi|56476802|ref|YP_158391.1| hypothetical protein ebA2431 [Aromatoleum aromaticum EbN1]
 gi|56312845|emb|CAI07490.1| conserved plasmid related protein [Aromatoleum aromaticum EbN1]
          Length = 757

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL   N+     L  +  K  +       + +  + V
Sbjct: 689 SWRIGQKQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDV 738


>gi|110347115|ref|YP_665933.1| methyltransferase type 11 [Mesorhizobium sp. BNC1]
 gi|110283226|gb|ABG61286.1| Methyltransferase type 11 [Chelativorans sp. BNC1]
          Length = 1516

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 11/169 (6%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----LARLQKAFPQG 91
            A       + K ++     ++   ++       +    AY +  D    +          
Sbjct: 1099 AGHPYVRHDGKPFELPGAAQMIFSDLGTISVEKSRGFSAYRWIRDELIRMGVPAGEIAFM 1158

Query: 92   RTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            +   K     + +     GK+  L     + G G+N Q     L    + W   + +Q  
Sbjct: 1159 QDYKKSEAKQRLFGDVRAGKVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQIEQRE 1218

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             RI      Q      V ++    + ++D  + Q    K+      L+ 
Sbjct: 1219 GRIVR----QGNQHDEVDIFAYATEGSLDATMWQNNERKARFIAAALSG 1263


>gi|224003263|ref|XP_002291303.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973079|gb|EED91410.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 69

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK-RAVFVYYLIAQNTIDELVLQRLRTK 187
            + +     WW+     Q + RI      + G K   V V   +  ++++E ++     K
Sbjct: 13  ASSVFILDPWWNASVEDQCVNRI-----HRIGQKAEVVRVRKFVVTDSVEEKIVSLQGKK 67

Query: 188 S 188
            
Sbjct: 68  K 68


>gi|119383720|ref|YP_914776.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119373487|gb|ABL69080.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 883

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 14/153 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLA--------RLQKAFPQGRTLDKDPCTIQEWN 105
            +I+ L  I  +  AA  I+ +    +           +       + LD+    I ++ 
Sbjct: 320 ARIEKLMEIRAEDPAAHRIIWHDLEDERRALEKAVPGIVTITGNGSQKLDRREELIGDFA 379

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +G++  L A P   G G NLQ      VF  +     +  Q I R+    Q        V
Sbjct: 380 DGRVQELGAKPVMLGSGTNLQRHCAWHVFLGIGHKFNDFIQAIHRLLRFGQPADS----V 435

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            +  +  +   +  + + L  K    + ++  +
Sbjct: 436 RLDLIYTE--AEREIRRSLERKWRQHNEMVQKM 466


>gi|241568989|ref|XP_002402624.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215500065|gb|EEC09559.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 1081

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 65/193 (33%), Gaps = 14/193 (7%)

Query: 10  ELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEE--KHWKEVHDEKIKALEVIIEKA 66
           ELY DL+    + +     K +K  ++         +  +    +  +   +++ I    
Sbjct: 411 ELYTDLKERLGVSSVVGHPKLIKLEEIVLDHFKNFGKSAETRVMIFSQYRDSVKEISSYL 470

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           N    ++    N      +    +G T  +    ++ + +G   +L         GL++ 
Sbjct: 471 NRHRPLIKA-MNFMGQNQKTGTARGFTQKEQLLVVKRFRDGGYNVLV-STCVGEEGLDIG 528

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
               I+  +          Q + R G  R  +        +  L+++   ++   +    
Sbjct: 529 EIDLIVC-YDAPKSPIRLVQRMGRTGRKRAGR--------IVVLLSEGKEEQAYRESNSK 579

Query: 187 KSTIQDLLLNALK 199
           K T+   +LN  +
Sbjct: 580 KQTVHRAILNGGR 592


>gi|167851584|ref|ZP_02477092.1| helicase domain protein [Burkholderia pseudomallei B7210]
          Length = 763

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 642 RREDWIAEQLDRGIDVLITNPDLVKTGLDLLEFPTIVFMQSGFNVYTLQ------QAARR 695

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V YL   NT     L  +  K T+   
Sbjct: 696 SWRIGQKQPVKVIYLGYANTSQMTCLSLMAKKITVSQS 733


>gi|241664254|ref|YP_002982614.1| helicase domain-containing protein [Ralstonia pickettii 12D]
 gi|240866281|gb|ACS63942.1| helicase domain protein [Ralstonia pickettii 12D]
          Length = 949

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              I   H+ ++  RL     Q           +    +    E +  +L A       G
Sbjct: 489 CRYIATAHYVAEQLRLVFPDHQVTAVTGEFAPTEREAAVDAMGEAEQRILVAT-DCLSEG 547

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVL 181
           +NLQ     +V + L W+   H+Q   R+    Q+     R V    L  Q+  +D  VL
Sbjct: 548 INLQNLFTAVVHYDLSWNPTRHEQREGRVDRFGQK----AREVRTTLLYGQDNPVDGAVL 603

Query: 182 QRLRTKST 189
           Q +  K+ 
Sbjct: 604 QVILRKAE 611


>gi|226292283|gb|EEH47703.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb18]
          Length = 2038

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+ +G    K  +L  H  +           N ++FF   +   ++         + R
Sbjct: 1908 ITEFQKGTEKVKSKVLILHLGNVSASGLNLQNANHVIFFHPLFAKSQYDYTSGMAQAIGR 1967

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             R+ G ++ V +Y  +A  TI+  + +
Sbjct: 1968 SRRYGQQKHVHIYQFLALKTIEVNIFE 1994


>gi|255559737|ref|XP_002520888.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
 gi|223540019|gb|EEF41597.1| snf2 histone linker phd ring helicase, putative [Ricinus communis]
          Length = 1588

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 108  KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             I +L        +GLNL      +V      +        E   ++R  + G +    V
Sbjct: 1451 PIQVLMLLVQHGANGLNLLE-AQHVVLVEPLLNPAA-----ETQAISRVHRIGQENRTLV 1504

Query: 168  YYLIAQNTIDELVLQR 183
            +  + +NT++E + + 
Sbjct: 1505 HRFMVKNTVEESIYKL 1520


>gi|317132847|ref|YP_004092161.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470826|gb|ADU27430.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
          Length = 2462

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K      +   G++ +L    A  G G+N+Q            W   + +Q
Sbjct: 2079 FIHDADTEVKKKELFAKVRAGQVRVLMGSTAKMGAGMNVQDLLIASHDLDCPWRPGDLEQ 2138

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q        ++  + + T D  + Q +  K      ++ +
Sbjct: 2139 RSGRIIR----QYNTNPEGHIFRYVTEGTFDSYLWQTVENKQKFISQIMTS 2185


>gi|330824360|ref|YP_004387663.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329309732|gb|AEB84147.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 756

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRCIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V YL   N+     L  +  K  +   
Sbjct: 689 SWRIGQKQPVRVIYLGYANSSQMTCLGLMARKIMVSQS 726


>gi|255009084|ref|ZP_05281210.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146833|ref|ZP_07809026.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135600|gb|EFR52960.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1659

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V +     + T+D      L+ K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLKNKQMFINQI 1395


>gi|293369550|ref|ZP_06616128.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635254|gb|EFF53768.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1659

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V +     + T+D      LR K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 1395


>gi|327261911|ref|XP_003215770.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
            SHPRH-like [Anolis carolinensis]
          Length = 1698

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
               + KI +L     +  +GLN+      ++      +            + R  + G  
Sbjct: 1586 FKYDPKINILLLPLHTGSNGLNI-IEATQVLLVEPILNPAHEL-----QAIGRVHRIGQT 1639

Query: 163  RAVFVYYLIAQNTIDELV 180
            +   V+  + + TI+E +
Sbjct: 1640 KPTIVHRFLIKATIEERM 1657


>gi|297561671|ref|YP_003680645.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846119|gb|ADH68139.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1057

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 18/124 (14%)

Query: 89  PQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G + ++       +     E  + +L A   +   G++LQ   + LV + + ++  + 
Sbjct: 555 HGGMSTEEREALRVAFQKDPGEHPLRILIAT-DAASEGIDLQRHCHRLVNYDIPFNPNKL 613

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLI------AQNTIDELV--LQRLRTKSTIQDLLLN 196
           +Q I RI      + G +    V++ +      A ++ +  +  L R+ TK    +  L 
Sbjct: 614 EQRIGRID-----RYGQENPPEVFHFVGTGWEKATDSYEADLEFLSRVATKVARMEEDLG 668

Query: 197 ALKK 200
           ++  
Sbjct: 669 SVNA 672


>gi|242063764|ref|XP_002453171.1| hypothetical protein SORBIDRAFT_04g001085 [Sorghum bicolor]
 gi|241933002|gb|EES06147.1| hypothetical protein SORBIDRAFT_04g001085 [Sorghum bicolor]
          Length = 78

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL------- 198
              +   + +  +    + V+ Y L+A  T++E + +R  TK  +   +++         
Sbjct: 2   PTHDLQAIYQVWRYSQTKLVYAYRLMAHRTMEEKIYKRRVTKEGLAARVVDRQQVSRTIS 61

Query: 199 KKETIH 204
           K+ET+H
Sbjct: 62  KEETLH 67


>gi|53714149|ref|YP_100141.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|52217014|dbj|BAD49607.1| putative DNA methylase [Bacteroides fragilis YCH46]
          Length = 1659

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 1286 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 1345

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V +     + T+D      LR K    + +
Sbjct: 1346 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 1395


>gi|303271539|ref|XP_003055131.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226463105|gb|EEH60383.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 1408

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLL-FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                +    +  + + +  +       + G GL  Q   +++VF  L     + +    
Sbjct: 731 STPNAERGEAVDRFRDDERCVAALISIKAGGTGLEFQK-ASVVVFAELPESAADVE---- 785

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNT----IDELVLQRLRT 186
                R  + G K +V VY+L+A  +    ID+     +  
Sbjct: 786 -QAEDRVHRRGQKGSVNVYFLVAHGSALARIDDARWNSIER 825


>gi|238490554|ref|XP_002376514.1| DNA repair helicase rad5,16, putative [Aspergillus flavus NRRL3357]
 gi|220696927|gb|EED53268.1| DNA repair helicase rad5,16, putative [Aspergillus flavus NRRL3357]
          Length = 878

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 51  VHDEKIKALEVIIEKA---NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKD 97
               K++A+  ++      +    +V   F ++               + F  G T D+ 
Sbjct: 664 KGSPKMRAMLPVLRDQVIVHGEKAMVWTQFPAEQIYVAAILKEANIDAEVFHAGLTRDER 723

Query: 98  PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +     +  +L         G+NLQ     +   ++        + +    + R
Sbjct: 724 MKLVERFTQKHDECMVLICAYNVNAAGMNLQNLCRNVHILTMSLS-----KSVVNQAIGR 778

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + G +R  FVY    +++ DE ++ R   K
Sbjct: 779 VSRLGQERMTFVYEYRLRSSFDEDLVSRSERK 810


>gi|190015965|ref|YP_001965173.1| putative helicase [Rhodococcus sp. NS1]
 gi|114796805|gb|ABI79398.1| putative helicase [Rhodococcus sp. NS1]
          Length = 1102

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                + +    + +L    +    GLNLQ  G ++  + + W+L   +Q I R+     
Sbjct: 833 KAEIKERFRNRDLTVLIGTDSM-SEGLNLQTCGRLIN-YDMPWNLMRVEQRIGRVDRIGA 890

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQ 182
                   + V      +T+++ V +
Sbjct: 891 S----YEHIQVTNYFYADTVEQRVYE 912


>gi|320665547|gb|EFX32593.1| Helicase family protein [Escherichia coli O157:H7 str. LSU-61]
          Length = 952

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|224121478|ref|XP_002318592.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222859265|gb|EEE96812.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 726

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 8/96 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N   + +      + G GL+       +VF  L                 R  + G 
Sbjct: 109 DRQNA--VKIAIIGITAGGVGLDF-SSAQNVVFLELPQSPSLML-----QAEDRAHRRGQ 160

Query: 162 KRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             AV +Y   A++T+DE   Q L         + + 
Sbjct: 161 SNAVNIYIFCAKDTMDETCWQNLNKSLHRVSSITDG 196


>gi|320660619|gb|EFX28080.1| Helicase family protein [Escherichia coli O55:H7 str. USDA 5905]
          Length = 952

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|258646416|ref|ZP_05733885.1| conserved hypothetical protein [Dialister invisus DSM 15470]
 gi|260403819|gb|EEW97366.1| conserved hypothetical protein [Dialister invisus DSM 15470]
          Length = 482

 Score = 45.9 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           ++ G +  L   P+  G G+N Q     ++F  L    E+         V R  + G K+
Sbjct: 357 FSVGLLKCLITKPSIAGFGMNWQN-CRNVIFVGLSDSYEQFY-----QAVRRCWRFGQKK 410

Query: 164 AVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLL----NALKKET 202
           AV VY +I+  +  + E + ++      ++D ++     A+K+E 
Sbjct: 411 AVDVYIIISAKEGCVKENIERKEADSRKMRDAMITLTKQAVKEEL 455


>gi|331028076|ref|YP_004421790.1| helicase [Roseobacter phage RDJL Phi 1]
 gi|301341539|gb|ADK73423.1| helicase [Roseobacter phage RDJL Phi 1]
          Length = 512

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 25/208 (12%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-DEEKHWKEVHDEKIKALEV 61
            Y         ++  + I         VK  Q+ +G +     ++H     + ++ AL  
Sbjct: 300 VYRDLIASTILEVGDQEISLGEYPPGLVKFQQIVSGYLVDEFGDEHTIPGGNPRLDALVD 359

Query: 62  IIEKANAAPIIVAYHFNSDLA----------RLQKAFPQGRTLDKDPCTIQEWN----EG 107
            +E+ N    +V   F  D+           R    +    T  +     +E+     + 
Sbjct: 360 EVERTNG-RTVVWCAFRRDMDQVVAALKATGRKVLTYHGRSTDAEKALARKEFAPDKLDS 418

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K   L  HP S G GLNL  G + ++++S   D     Q  ER            + V V
Sbjct: 419 KYDDLVGHPKSGGRGLNL-SGADKIIWYSHTTDAVVRFQADERATEVGG------QNVPV 471

Query: 168 YYLIAQNTIDELVL-QRLRTKSTIQDLL 194
              IA   +DE +L   L  K+   + +
Sbjct: 472 VNFIAPG-VDEYILDDILAPKAETAEDV 498


>gi|320644400|gb|EFX13465.1| Helicase family protein [Escherichia coli O157:H- str. 493-89]
 gi|320649718|gb|EFX18242.1| Helicase family protein [Escherichia coli O157:H- str. H 2687]
          Length = 952

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|251773068|gb|EES53624.1| DNA/RNA helicase, SNF2 family [Leptospirillum ferrodiazotrophum]
          Length = 733

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 3   QYHKFQRELYCDLQGENI--EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y K  +EL   L             +  ++  Q+ N    +  +  W      K + L 
Sbjct: 659 LYQKAVKELEETLSEAEGIGRKGKVLAFLMRFKQICNHPSQWRGDGEWAPEESGKFQRLG 718

Query: 61  VI 62
            I
Sbjct: 719 EI 720


>gi|237719902|ref|ZP_04550383.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229450454|gb|EEO56245.1| helicase domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 651

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 278 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 337

Query: 146 QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Q   R        +      V +     + T+D      L+ K    + +
Sbjct: 338 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLKNKQMFINQI 387


>gi|15804878|ref|NP_290919.1| putative ATP-dependent helicase [Escherichia coli O157:H7 EDL933]
 gi|168749544|ref|ZP_02774566.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754866|ref|ZP_02779873.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760541|ref|ZP_02785548.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168766575|ref|ZP_02791582.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168773995|ref|ZP_02799002.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168782811|ref|ZP_02807818.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168784937|ref|ZP_02809944.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|168797866|ref|ZP_02822873.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|170683792|ref|YP_001746739.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|195937309|ref|ZP_03082691.1| helicase domain-containing protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806552|ref|ZP_03248889.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811987|ref|ZP_03253316.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818305|ref|ZP_03258625.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398792|ref|YP_002273828.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326570|ref|ZP_03442654.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254796304|ref|YP_003081141.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226661|ref|ZP_05940942.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256952|ref|ZP_05949485.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285686|ref|YP_003502504.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|12519307|gb|AAG59485.1|AE005661_1 putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|170521510|gb|ACB19688.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|187770256|gb|EDU34100.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016143|gb|EDU54265.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999742|gb|EDU68728.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189357770|gb|EDU76189.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189363963|gb|EDU82382.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189368951|gb|EDU87367.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189375059|gb|EDU93475.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|189379473|gb|EDU97889.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208726353|gb|EDZ75954.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733264|gb|EDZ81951.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738428|gb|EDZ86110.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160192|gb|ACI37625.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322791|gb|EEC31215.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254595704|gb|ACT75065.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765559|gb|ADD59520.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|320190583|gb|EFW65233.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639030|gb|EFX08676.1| Helicase family protein [Escherichia coli O157:H7 str. G5101]
 gi|320654766|gb|EFX22735.1| Helicase family protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|326345385|gb|EGD69128.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1125]
 gi|326346760|gb|EGD70494.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1044]
          Length = 952

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|302413908|ref|XP_003004786.1| hypothetical protein VDBG_04392 [Verticillium albo-atrum VaMs.102]
 gi|261355855|gb|EEY18283.1| hypothetical protein VDBG_04392 [Verticillium albo-atrum VaMs.102]
          Length = 81

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               ++     Q ++R+      + G KR V     I +N+ +E +++    K  +  L 
Sbjct: 1   MEPQYNPAAEAQAVDRV-----HRLGQKRPVQTVRYIMRNSFEEKMIELQDKKKKLASLS 55

Query: 195 LNA 197
           ++ 
Sbjct: 56  MDG 58


>gi|300928441|ref|ZP_07143973.1| protein, SNF2 family [Escherichia coli MS 187-1]
 gi|300463558|gb|EFK27051.1| protein, SNF2 family [Escherichia coli MS 187-1]
          Length = 952

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|217969400|ref|YP_002354634.1| DEAD-like helicase [Thauera sp. MZ1T]
 gi|217506727|gb|ACK53738.1| DEAD-like helicase [Thauera sp. MZ1T]
          Length = 756

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL   N+     L  +  K  +       + +  + V
Sbjct: 689 SWRIGQKQPVRVIYLGYANSSQMTCLGLMARKIMVSQSTSGDVPESGLDV 738


>gi|15834515|ref|NP_313288.1| ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai]
 gi|13364739|dbj|BAB38684.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           Sakai]
          Length = 943

 Score = 45.9 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 482 ETVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 536

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 537 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 577


>gi|328948587|ref|YP_004365924.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328448911|gb|AEB14627.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2901

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 92   RTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             T +K       +N+ K P  +     +   G++L     ++   SL W+  E  Q   R
Sbjct: 1995 NTPEKKEKITSCFNDEKNPCKIIIGGKNTSEGIDLNGNSFVMYNCSLGWNPSETIQAEGR 2054

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            I      Q      V + Y +  ++ID ++ Q+   K +  + L N  K ++++V
Sbjct: 2055 IWRQGNLQG----NVHIVYPVMNDSIDSVLYQKHDEKRSRINELWN-YKGDSLNV 2104


>gi|331665952|ref|ZP_08366846.1| ATP-dependent helicase [Escherichia coli TA143]
 gi|331057003|gb|EGI28997.1| ATP-dependent helicase [Escherichia coli TA143]
          Length = 952

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + ++ F + W L   QQ   RI      
Sbjct: 491 KTVEAFGKTQSPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQNT-----IDELVLQRLRTKSTIQDL 193
           + G K    + YL+ + +      D  VL+ L  K      
Sbjct: 546 RYGQKHQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQK 586


>gi|325003374|ref|ZP_08124486.1| helicase domain protein [Pseudonocardia sp. P1]
          Length = 1005

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 26/131 (19%)

Query: 91  GRTLDKDPCTIQEWNEGK--------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
             + D+       +            + +L A  ++   G++LQ   + L+ F + ++  
Sbjct: 510 STSSDEREDIRAAFTSPVTEPPGRSAVRVLLATDSAG-EGIDLQDHCHRLINFDVPFNPS 568

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-----IDELVLQRLRTK-------STI 190
             +Q I RI      + G +    +Y+    +T      D   ++R+  K          
Sbjct: 569 RLEQRIGRID-----RYGQQEVPEIYHFAPDSTSSTYAADMDFMRRIAEKVGTVANDLGS 623

Query: 191 QDLLLNALKKE 201
            + +++A  +E
Sbjct: 624 VNQIIDADVQE 634


>gi|271969042|ref|YP_003343238.1| helicase domain-containing protein [Streptosporangium roseum DSM
           43021]
 gi|270512217|gb|ACZ90495.1| helicase domain protein [Streptosporangium roseum DSM 43021]
          Length = 941

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+E        +         G+NLQ     +V + L W+   H+Q   R+    Q
Sbjct: 520 RLAAIEELGAEPGRHVLVATDCLSEGVNLQEHFQAVVHYDLAWNPTRHEQREGRVDRFGQ 579

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            +    RAV +Y L   N ID +VL  L  K      
Sbjct: 580 -RKQTVRAVTMYGL--DNGIDGVVLDVLIRKHRTIAK 613


>gi|198475821|ref|XP_002132503.1| GA27713 [Drosophila pseudoobscura pseudoobscura]
 gi|198137974|gb|EDY69905.1| GA27713 [Drosophila pseudoobscura pseudoobscura]
          Length = 163

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 27/101 (26%)

Query: 100 TIQEWN---EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            I+ +N     +  +      + G G+NL  G N ++     W+    QQ I R      
Sbjct: 1   MIKRFNSEVNKRARVFLISARAGGQGINL-IGANRVIILDTSWNPSNDQQNIFR------ 53

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                             T++E V  R  TK  +   +++ 
Sbjct: 54  -----------------GTMEEKVYSRSVTKQAMSFRVVDE 77


>gi|91784597|ref|YP_559803.1| putative, plasmid-related, DNA/RNA helicase [Burkholderia
           xenovorans LB400]
 gi|91688551|gb|ABE31751.1| Putative, plasmid-related, DNA/RNA helicase [Burkholderia
           xenovorans LB400]
          Length = 768

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 646 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 699

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 700 SWRIGQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 749


>gi|40019205|emb|CAE92929.1| putative DNA/RNA helicase [Pseudomonas putida]
          Length = 759

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|222634806|gb|EEE64938.1| hypothetical protein OsJ_19808 [Oryza sativa Japonica Group]
          Length = 1922

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 44/153 (28%), Gaps = 10/153 (6%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA 87
             +  +     D+           +  +  I            I+  +          + 
Sbjct: 604 LRKCCDHPYLVDQSLQSSLTKGHSLTDILDIGSGGGAGNPMGDILDDFVRQRFGFESYER 663

Query: 88  FPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             +G  + K    +  +N+      +F   +            + ++ +   W+     +
Sbjct: 664 VERGLLVPKKQTALNMFNDKTKGRFIFLIDSRACVPSIKLSSVDAIIIYCSDWNPTNDLR 723

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           +++RI +           V ++ L +  T++E 
Sbjct: 724 VLQRISIE-----SQSECVPIFRLYSSCTVEEK 751


>gi|71004104|ref|XP_756718.1| hypothetical protein UM00571.1 [Ustilago maydis 521]
 gi|46095987|gb|EAK81220.1| hypothetical protein UM00571.1 [Ustilago maydis 521]
          Length = 1605

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 12/125 (9%)

Query: 54   EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----------GRTLDKDPCTIQ 102
             K+       +       +V   +   L R+QK+                  D+      
Sbjct: 1470 GKLDQSLEAYDSYEPVKSVVFSQWTKMLDRIQKSLNITGIRYTRLDGTMSRPDRTAALEA 1529

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
               +  I +L     + G GLNL            +W+     Q ++RI    Q +    
Sbjct: 1530 FKRDAGIEVLLVSLRAGGTGLNLVSAC-RAYLMDPYWNPAVENQGLDRIHRMGQTRPHRG 1588

Query: 163  RAVFV 167
            +   +
Sbjct: 1589 KHAEI 1593


>gi|88706065|ref|ZP_01103773.1| helicase SNF2 family protein [Congregibacter litoralis KT71]
 gi|88699779|gb|EAQ96890.1| helicase SNF2 family protein [Congregibacter litoralis KT71]
          Length = 643

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 89  PQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G   ++       +     +  + +L A   +   G++LQ   N L+   + ++    
Sbjct: 522 HGGMDQEEREDVKAAFQTNPKDADVRILLAT-DAASEGIDLQNYCNCLMHLEIPYNPNVM 580

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--LNALKKET 202
           +Q   RI    Q+    +  V +++ +     D         K  I   L  L +++++ 
Sbjct: 581 EQRNGRIDRHGQK----ESEVLIWHPVDAGDSDGK--AVGGHKEDIIRALRKLESMREDM 634


>gi|124267554|ref|YP_001021558.1| plasmid-like protein [Methylibium petroleiphilum PM1]
 gi|124260329|gb|ABM95323.1| conserved plasmid-related protein [Methylibium petroleiphilum PM1]
          Length = 757

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL   N+     L  +  K  +       + +  + V
Sbjct: 689 SWRIGQKQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDV 738


>gi|121594565|ref|YP_986461.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606645|gb|ABM42385.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 756

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL   N+     L  +  K  +       + +  + V
Sbjct: 689 SWRIGQKQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDV 738


>gi|254884231|ref|ZP_05256941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837024|gb|EET17333.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1658

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 1/109 (0%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      + N G + +LF   +  G G+N Q     +    + W   + +Q
Sbjct: 1290 FIQTAKTEQERKKLFTDMNNGTVRVLFGSTSMLGTGVNAQQRAVAVHHLEVPWRPADLEQ 1349

Query: 147  MIERIGVTRQRQAG-FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R               V +     + T+D      LR K    + +
Sbjct: 1350 RNGRAVRKGNTVKFWGGNVVDIIIYGTEKTLDAYKFNLLRNKQLFINQI 1398


>gi|163855783|ref|YP_001630081.1| hypothetical protein Bpet1476 [Bordetella petrii DSM 12804]
 gi|163259511|emb|CAP41811.1| conserved plasmid related protein [Bordetella petrii]
          Length = 615

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 493 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 546

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L+ +  K  +       + +  + V
Sbjct: 547 SWRIGQKLHVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 596


>gi|218197392|gb|EEC79819.1| hypothetical protein OsI_21272 [Oryza sativa Indica Group]
          Length = 2036

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 44/153 (28%), Gaps = 10/153 (6%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKA 87
             +  +     D+           +  +  I            I+  +          + 
Sbjct: 698 LRKCCDHPYLVDQSLQSSLTKGHSLTDILDIGSGGGAGNPMGDILDDFVRQRFGFESYER 757

Query: 88  FPQGRTLDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             +G  + K    +  +N+      +F   +            + ++ +   W+     +
Sbjct: 758 VERGLLVPKKQTALNMFNDKTKGRFIFLIDSRACVPSIKLSSVDAIIIYCSDWNPTNDLR 817

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           +++RI +           V ++ L +  T++E 
Sbjct: 818 VLQRISIE-----SQSECVPIFRLYSSCTVEEK 845


>gi|189192276|ref|XP_001932477.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187974083|gb|EDU41582.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 2299

 Score = 45.5 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGRTLDKD-- 97
            E     ++  +K+ A+  +I +                 S + R+   +       +   
Sbjct: 2063 ESHDPDQIFGKKLHAIVQLISEMPPADQGIIFAPNDDLMSVIERVLDHYKIRYATIRQTR 2122

Query: 98   -PCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE-- 149
                I+E+           LL  +  +           N + F S      + Q   +  
Sbjct: 2123 IAQVIEEFKTNKKPATMKKLLILNLGNPSAAGINLINANHVFFVSPLH--ADDQYKYDSA 2180

Query: 150  -RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                + R R+ G  + V +Y+++A  TID  +L+  R K 
Sbjct: 2181 MAQAIARSRRHGQGKTVHIYHVVALRTIDVDILE-HRHKR 2219


>gi|317126187|ref|YP_004100299.1| helicase [Intrasporangium calvum DSM 43043]
 gi|315590275|gb|ADU49572.1| helicase domain protein [Intrasporangium calvum DSM 43043]
          Length = 1068

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQ-EWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFS 136
            R + A  QG T  +     +  +        + +L A  ++   G++LQ   + LV F 
Sbjct: 565 YRDRIATIQGSTDAETRELTRARFTADPAQEPVRVLVATDSAG-EGIDLQTHCHRLVNFD 623

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL--IAQNT---IDELVLQRLRTKSTIQ 191
           + ++    +Q I RI      + G K    +++   I++ T    D   ++R+  K    
Sbjct: 624 IPFNPSRLEQRIGRID-----RYGQKYTPEIFHFAPISKATTFDADMDFMRRIAEKIGQV 678

Query: 192 DLLLNALKK 200
              L ++ +
Sbjct: 679 AQDLGSVNQ 687


>gi|219115954|ref|XP_002178772.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409539|gb|EEC49470.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 51

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 19/51 (37%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           +     +     R  + G  + V +Y L+   + ++ +  R   K  ++  
Sbjct: 1   DWNPQNDVQAQARCHRIGQTKDVRIYRLVTSRSFEQEMFDRASRKLGLEQA 51


>gi|154149046|ref|YP_001405769.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
 gi|153805055|gb|ABS52062.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
          Length = 2117

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 G +  K     Q+ N G+I +L    A  G G N+Q     +  F + W   +  
Sbjct: 1688 FIHDTGGSNAKKQELFQKVNSGEIRVLIGSTAKMGAGTNVQERVTAIHHFDVPWRPSDFI 1747

Query: 146  QMIERIGVTRQ---RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            Q   R+        ++      +  +  + +NT D +  Q + TKS 
Sbjct: 1748 QRNGRVIRQGNVLFQKDPDNFKIKEFRYVTENTYDAVSWQIIETKSN 1794


>gi|76157733|gb|AAX28568.2| SJCHGC04949 protein [Schistosoma japonicum]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +L        +GLNL    N ++F           Q + RI      + G  R   ++
Sbjct: 50  VWILLMPVQLGANGLNLTS-ANHVLFIDPVLSHAREAQAVARI-----HRIGQTRPGIIH 103

Query: 169 YLIAQNTIDELVLQRLRTKSTIQ 191
             + +++I+  +       + + 
Sbjct: 104 RFLVKDSIEAALHASQSRNTDLS 126


>gi|317139207|ref|XP_001817347.2| hypothetical protein AOR_1_462174 [Aspergillus oryzae RIB40]
          Length = 620

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                 GLNLQ   N +      W+       +E   + R  + G ++ V V     +N+
Sbjct: 525 LDEGAFGLNLQSV-NRVFIVEPQWNPS-----VESQAIARAIRLGQEQQVLVTRYRVENS 578

Query: 176 IDELVLQRLRTKSTIQDL 193
           I+E +  +   K  I  +
Sbjct: 579 IEEAMCSQQTHKLKISQM 596


>gi|57209106|emb|CAI41121.1| SNF2 histone linker PHD RING helicase [Homo sapiens]
          Length = 129

 Score = 45.5 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     +  +GL +      ++      +            + R  + G  +   V+  
Sbjct: 1   ILLLPLHTGSNGLTI-IEATHVLLVEPILNPAHEL-----QAIGRVHRIGQTKPTIVHRF 54

Query: 171 IAQNTIDELVLQRLR 185
           + + TI+E +   L+
Sbjct: 55  LIKATIEERMQAMLK 69


>gi|219883155|ref|YP_002478317.1| helicase domain protein [Cyanothece sp. PCC 7425]
 gi|219867280|gb|ACL47618.1| helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 1049

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                G   D        +        + +L A   +   GL+LQ   + L+ + + W+ 
Sbjct: 552 MMLYGGMNSDDREAVKAAFQTHPDLSPVRILLAT-DAASEGLDLQNYCSRLIHYEIPWNP 610

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
              +Q   R+    QR A     V +Y+ + + 
Sbjct: 611 NRMEQRNGRVDRHGQRAA----EVLIYHFVGKG 639


>gi|294644985|ref|ZP_06722718.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292639676|gb|EFF57961.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 765

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 392 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 451

Query: 146 QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Q   R        +      V +     + T+D      LR K    + +
Sbjct: 452 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 501


>gi|289619832|emb|CBI54115.1| unnamed protein product [Sordaria macrospora]
          Length = 623

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 133 VFFSLWWDLE---EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             +      E        +ER    R  + G  +   +  ++ +++ID  +    + K  
Sbjct: 491 AIYDFDDKPEIKVLWNSQLERQAFARVYRIGQLKRTHMVRILTKSSIDLRLDAIQKLKEE 550

Query: 190 IQDLLLNALK 199
           I D  LN  K
Sbjct: 551 ICDKALNGDK 560


>gi|41057508|ref|NP_957981.1| transcription termination factor NPH-I [Bovine papular stomatitis
           virus]
 gi|41018824|gb|AAR98429.1| transcription termination factor NPH-I [Bovine papular stomatitis
           virus]
          Length = 638

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                 RT D     +  +N        +I +     +       L    N +    + W
Sbjct: 410 HVEFSSRTRDTRAKLVDAFNACDNTDGERIKVCVFSLSGTEGLSFL--SINDIFILDMTW 467

Query: 140 DLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQD 192
           +    +Q++ R       +     +R V V++++A+      T+DE +L  ++ KS    
Sbjct: 468 NEASLRQIVGRAVRLNSHEMTPAERRYVNVHFVVARQDSGAATVDEDLLDLIKDKSRQFT 527

Query: 193 LLLNALKKETIH 204
            L   LK+ ++ 
Sbjct: 528 QLFRVLKRSSLE 539


>gi|294810382|ref|ZP_06769041.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442419|gb|EFG11227.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 350 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 409

Query: 146 QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Q   R        +      V +     + T+D      LR K    + +
Sbjct: 410 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 459


>gi|253567328|ref|ZP_04844777.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251943897|gb|EES84425.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 830

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           +      T        +E N GK+ +LF      G G+N Q     +    + W   + +
Sbjct: 457 QFIQCATTERARKKLFEEMNNGKVRVLFGSTTMLGTGVNAQQRAVAVHHLEIPWRPADME 516

Query: 146 QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
           Q   R        +      V +     + T+D      LR K    + +
Sbjct: 517 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 566


>gi|254297099|ref|ZP_04964552.1| dead/deah box helicase [Burkholderia pseudomallei 406e]
 gi|157807295|gb|EDO84465.1| dead/deah box helicase [Burkholderia pseudomallei 406e]
          Length = 755

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 633 RREDWIAEQLDRGIDVLITNPDLVKTGLDLLEFPTIVFMQSGYNVYTLQ------QAARR 686

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ + V YL   +T     L  +  K  +   
Sbjct: 687 SWRIGQKQPIKVIYLGYADTSQMHCLTLMAKKIAVSQS 724


>gi|134095189|ref|YP_001100264.1| putative helicase from plasmid origin [Herminiimonas
           arsenicoxydans]
 gi|133739092|emb|CAL62140.1| Conserved hypothetical protein, putative helicase [Herminiimonas
           arsenicoxydans]
          Length = 759

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K +V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLSVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|107102061|ref|ZP_01365979.1| hypothetical protein PaerPA_01003109 [Pseudomonas aeruginosa PACS2]
          Length = 759

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K +V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLSVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|328773083|gb|EGF83120.1| hypothetical protein BATDEDRAFT_85764 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1198

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                     G +     +  S   GL L    ++++            + IE+  +TR  
Sbjct: 1069 QSVTTFSESGDVVAFMLNAKSHSSGLTLVCAMHVILIEP------LLNRSIEQQAITRVH 1122

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            + G +    V+  I  NTI++ +++    + ++ + +
Sbjct: 1123 RIGQQNETHVWRYIVHNTIEKQIVKLADQRMSVSNQI 1159


>gi|302822210|ref|XP_002992764.1| hypothetical protein SELMODRAFT_430932 [Selaginella moellendorffii]
 gi|300139409|gb|EFJ06150.1| hypothetical protein SELMODRAFT_430932 [Selaginella moellendorffii]
          Length = 253

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 20/50 (40%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
             I  +  + +   G  + V +   I +++++E + Q    K  +    L
Sbjct: 186 SNIPAVAPSSESSIGQTKNVSIKRFIVKDSVEERMQQVQARKQRLIAGAL 235


>gi|222623720|gb|EEE57852.1| hypothetical protein OsJ_08484 [Oryza sativa Japonica Group]
          Length = 952

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 53/190 (27%), Gaps = 49/190 (25%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE------------------------ 45
           +    L  E  +     +      +L N      +                         
Sbjct: 512 KNVKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFS 571

Query: 46  ----------KHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQKAFPQ--- 90
                       W E+  +      ++  +       I++  ++   L    +   +   
Sbjct: 572 GRSGSWTGGGGMWVELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTLDLFAQLCRERRY 631

Query: 91  -------GRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                    +++K    + ++N+      +      + G GLNL  GGN L+ F   W+ 
Sbjct: 632 PYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNL-VGGNRLILFDPDWNP 690

Query: 142 EEHQQMIERI 151
              +Q+ +R 
Sbjct: 691 ANDKQVYQRQ 700


>gi|38638515|ref|NP_943101.1| putative RNA polymerase [Pseudomonas sp. ND6]
 gi|237797144|ref|YP_002887434.1| putative RNA/DNA helicase [Pseudomonas fluorescens]
 gi|34335303|gb|AAP44201.1| putative RNA polymerase [Pseudomonas sp. ND6]
 gi|229424281|gb|ACQ63505.1| putative RNA/DNA helicase [Pseudomonas fluorescens]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ  G ++    L W+     Q I RI    QR+      V +  L+ + T+DE + 
Sbjct: 6   GLNLQTLGTLIN-VDLPWNPTRLGQRIGRIKRFGQRR----ETVDMLNLVFEQTVDEKIY 60

Query: 182 QRLRTKS----TIQDLLLNALKKETIH 204
           +RL  +      +   L + +K E I 
Sbjct: 61  ERLSERMKNRYDLFGSLADTIKDEWID 87


>gi|302838632|ref|XP_002950874.1| SNF2 family Chromodomain-helicase protein [Volvox carteri f.
            nagariensis]
 gi|300263991|gb|EFJ48189.1| SNF2 family Chromodomain-helicase protein [Volvox carteri f.
            nagariensis]
          Length = 3332

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            ++ A     G G NL    + ++ F   W        ++   + R  + G    + V+ L
Sbjct: 1325 IVLATSRILGLGTNLPSVRS-VIIFDSDWHP-----RLDMQALRRAFRLGEPGQLAVFRL 1378

Query: 171  IAQNTIDELVLQRLRTKSTIQDL 193
              + T++E +LQ +  +  ++  
Sbjct: 1379 YVRGTVEERLLQLVDRRRGLEQA 1401


>gi|302343997|ref|YP_003808526.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640610|gb|ADK85932.1| helicase domain protein [Desulfarculus baarsii DSM 2075]
          Length = 1065

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 22/125 (17%)

Query: 67  NAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWNEGK----I 109
           N   +I+   + +  +                         D+       +        +
Sbjct: 524 NGKRVILFTEYRATHSWLHQILTANGYGGDRLMYLHGSMPPDEREPVKAAFQAHPDISPV 583

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   +   G++LQ   N L+   + W+    +Q   RI    Q+    +  VF+++
Sbjct: 584 RILLAT-DAASEGIDLQNHCNYLIHVEIPWNPNVMEQRNGRIDRHGQK----EDTVFIWH 638

Query: 170 LIAQN 174
            + + 
Sbjct: 639 PVGKG 643


>gi|126664931|ref|ZP_01735914.1| helicase [Marinobacter sp. ELB17]
 gi|126630301|gb|EBA00916.1| helicase [Marinobacter sp. ELB17]
          Length = 186

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +   K  +L     + G G+NLQ+  ++L+ + L W+ ++ +Q I R+    Q
Sbjct: 2   KAALVDCFKSDKADILV-STEAGGEGINLQF-CSVLINYDLPWNPQKVEQRIGRVHRYGQ 59

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +               +N  D+ V Q L  K  + + +  A
Sbjct: 60  KNDVVVVNFVNR----KNPADQRVFQLLNEKLKLFEGVFGA 96


>gi|295673276|ref|XP_002797184.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
 gi|226282556|gb|EEH38122.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
          Length = 2095

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 101  IQEWNEG----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-IGVTR 155
            I E+       K  +L  H              N ++FF   +   ++         + R
Sbjct: 1965 ITEFQTETEKVKSKVLILHLGDVSASGLNLQNANHVIFFHPLFAKSQYDYTSGMAQAIGR 2024

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQ--RLRTKSTIQDLLLNALKKETI 203
             R+ G ++ V +Y  +A  TI+  + +  R           ++  + E +
Sbjct: 2025 SRRYGQQKHVHIYQFLALKTIEVNIFEHRRRERLVKRDGQFISLPRTEML 2074


>gi|37676486|ref|NP_936882.1| hypothetical protein VVA0828 [Vibrio vulnificus YJ016]
 gi|37201028|dbj|BAC96852.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 4392

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 55/204 (26%), Gaps = 29/204 (14%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
            +   ++    +    +  + V+           +      E+  +K + LE  I + NA+
Sbjct: 2566 DSRLEIHEGEMPYSTTLQELVE---------RINTMADTGEIDADKYEKLEETIRELNAS 2616

Query: 70   PIIVAYHF------------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             +     F                           T  K      +  +G + +L     
Sbjct: 2617 TLTADTGFSVYDDLKAALIEKGIPEDQIAFIHDYNTTKKKEALFDQVRDGDVRVLIGSSM 2676

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--------QAGFKRAVFVYY 169
              G G N+Q     L      W   + +Q   RI                     V +  
Sbjct: 2677 KMGAGTNVQDRLVALHHMDAPWRPSDMEQREGRIVRQGNTFYERAAKAGKPEDFEVELVA 2736

Query: 170  LIAQNTIDELVLQRLRTKSTIQDL 193
               Q + D ++ Q L  K+   + 
Sbjct: 2737 YTTQGSSDPVMWQILERKAGAIEQ 2760


>gi|222083249|ref|YP_002542652.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738629|gb|ACM39467.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1697

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 16/200 (8%)

Query: 10   ELYCDLQGENIEAFNSASKTVK----CLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IE 64
            +L   +     E  N  +  ++      Q  + + Y   +    ++          +   
Sbjct: 1255 DLRLVMPVMEDEPDNKLNLLIRNAYRIWQETSHSTYIRPDGKPYDLPGAAQMIFSDLGTI 1314

Query: 65   KANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPA 117
                +    AY +  D    L          +   K     + +     GK+  L     
Sbjct: 1315 NVEKSRGFSAYRWIRDELIRLGVPASEIAFMQEYKKTEAKQRLFGDVRAGKVRFLIGSSE 1374

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+N Q     L    + W   + +Q   RI      Q      V ++    Q ++D
Sbjct: 1375 TMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHNEVDIFAYATQGSLD 1430

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
              + Q    K+      L+ 
Sbjct: 1431 ATMWQNNERKARFIAAALSG 1450


>gi|123428290|ref|XP_001307448.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121889077|gb|EAX94518.1| hypothetical protein TVAG_219240 [Trichomonas vaginalis G3]
          Length = 1188

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 22/188 (11%)

Query: 9   RELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVH-------------DE 54
           +E    L     +A       +K   +  +     D   H + +               +
Sbjct: 313 KEFVSKLSENKGDAHEKTCGIIKFLRECGDHPSLVDSSIHSELISMSGKTSILSRLLSSQ 372

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
           K    + I+  ++    I+   F+ +         +    D +    Q  +E    +L  
Sbjct: 373 KTDKRKSILVASDENSKIIETMFSDNRVSYVCINTEDSKADVEEKVKQFESEDFSRVLLI 432

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +P +  + +       I+  + L W   +    I  +   +            Y L+ Q+
Sbjct: 433 NPENMNYAVANTKSQTIIS-YDLSWTPVDSGSEII-LWNAKVPNTQQ------YRLVTQD 484

Query: 175 TIDELVLQ 182
           TI++++ +
Sbjct: 485 TIEQIMFE 492


>gi|320355158|ref|YP_004196497.1| hypothetical protein Despr_3073 [Desulfobulbus propionicus DSM
           2032]
 gi|320123660|gb|ADW19206.1| hypothetical protein Despr_3073 [Desulfobulbus propionicus DSM
           2032]
          Length = 535

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 16/181 (8%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA 82
            N  +K  + L++             +     K+          +  P +V    +   A
Sbjct: 220 INLLAKEKRLLEI----------LTTERKQGRKVAVFLEHTGTRDLVPTLVDKLHHHGFA 269

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            L       +  +++         G+   L  +P     GL+L     I+ F   +    
Sbjct: 270 PLVLRGQAVKPENRESWLKDHLETGQYDCLLCNPNLVKTGLDLLDFPTIVFFQCGYSVFT 329

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
                  R    R  + G    V V+YL    T+ +  L  +  K      +   L  + 
Sbjct: 330 L------RQASRRSWRIGQNLPVRVFYLAYAETMQDKALSLMAQKMETSLAVEGELSGQG 383

Query: 203 I 203
           +
Sbjct: 384 L 384


>gi|228988765|ref|ZP_04148841.1| hypothetical protein bthur0001_54110 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770945|gb|EEM19435.1| hypothetical protein bthur0001_54110 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1116

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 6/113 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               D+    I++       ++         G++L     I+ +   W   +        
Sbjct: 843 SCKTDRRTEWIEKKVSEGYNVIITSIKLVKVGVDLLITPTIMFYQYCWSMFDMI------ 896

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               R  + G  +   V+Y   + T  E +   +  K+     +   +  + +
Sbjct: 897 QAKNRAFRIGQTQECRVFYFAYKGTFQEYMALIIAKKNKASQAIGGEVTSDGL 949


>gi|296811861|ref|XP_002846268.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238841524|gb|EEQ31186.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1040

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
           L    + +    T  +    ++E+        +L    +    G+NLQ     +  F   
Sbjct: 854 LNIDSRVYHAALTTKERAELVREFCTSSTSAMVLVCSYSVNSAGMNLQAKCRNIHLFDAA 913

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                 +Q I R     Q +      V VY
Sbjct: 914 MSEAITRQAIGRCARLGQTRI-----VKVY 938


>gi|163801697|ref|ZP_02195595.1| helicase, putative [Vibrio sp. AND4]
 gi|159174614|gb|EDP59416.1| helicase, putative [Vibrio sp. AND4]
          Length = 1149

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 51/186 (27%), Gaps = 39/186 (20%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH----------DEKIKALEVII 63
            L+ E     ++ +  ++    +      D  +     +            K+ +L   +
Sbjct: 771 QLENEE---SHALTTLMRLRDSSLHPRLSDGGRLDIPKNAKSARVLYGESGKLASLLETL 827

Query: 64  EK--ANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
           ++  +     I+                        S +    KA  + +++      I 
Sbjct: 828 DRVRSKHEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMIA 887

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++   +   L               G N +V     W+  +     E     R  + G +
Sbjct: 888 DFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERHWNPAK-----EAQATDRVYRIGQE 942

Query: 163 RAVFVY 168
           + V +Y
Sbjct: 943 KEVHIY 948


>gi|322489205|emb|CBZ24460.1| putative SNF2/RAD54 related DNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 958

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +  D  +          + +    +  ++ G   +      +C  G++L       VF 
Sbjct: 480 QWTRDHCKRAVRIDGRVPVQQRGDLLHTFHRGDARIAVIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D         R    R  + G +  V VYYL+
Sbjct: 539 ELPPDAA-----WMRQAEDRLHRPGQRDEVVVYYLL 569


>gi|114050465|dbj|BAF30951.1| putative RNA polymerase [uncultured bacterium]
          Length = 145

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           GLNLQ  G ++    L W+     Q I RI    QR+      V +  L+ + T+DE + 
Sbjct: 6   GLNLQTLGTLIN-VDLPWNPTRLGQRIGRIKRFGQRR----ETVDMLNLVFEQTVDEKIY 60

Query: 182 QRLRTKS----TIQDLLLNALKKETIH 204
           +RL  +      +   L + +K E I 
Sbjct: 61  ERLSERMKNRYDLFGSLADTIKDEWID 87


>gi|319764667|ref|YP_004128604.1| dead-like helicase [Alicycliphilus denitrificans BC]
 gi|317119228|gb|ADV01717.1| DEAD-like helicase [Alicycliphilus denitrificans BC]
          Length = 759

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    T     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKQHVRVIYLGYAATSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|228949844|ref|ZP_04112054.1| hypothetical protein bthur0007_59330 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809902|gb|EEM56313.1| hypothetical protein bthur0007_59330 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 1116

 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 6/113 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               D+    I++       ++         G++L     I+ +   W   +        
Sbjct: 843 SCKTDRRTEWIEKKVSEGYNVIITSIKLVKVGVDLLITPTIMFYQYCWSMFDMI------ 896

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
               R  + G  +   V+Y   + T  E +   +  K+     +   +  + +
Sbjct: 897 QAKNRAFRIGQTQECRVFYFAYKGTFQEYMALIIAKKNKASQAIGGEVTSDGL 949


>gi|119383095|ref|YP_914151.1| DNA methylase N-4/N-6 domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119372862|gb|ABL68455.1| DNA methylase N-4/N-6 domain protein [Paracoccus denitrificans
           PD1222]
          Length = 881

 Score = 44.7 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF------PQGRTLDKDPCTIQEWNEG 107
            +I+ L  I  +  AA  I+ +   ++ A L+K           + LD+    I ++ +G
Sbjct: 320 GRIEKLMEIRAEDPAAHRIIWHDLEAERAALEKTVPGIATVYGSQDLDQREELIGDFADG 379

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           ++  L A P   G G NLQ      VF  +     +  Q I R+    Q        V +
Sbjct: 380 RVQELGAKPVMLGSGTNLQRHCAWHVFLGIGHKFNDFIQAIHRLLRFGQPADS----VRL 435

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
             +  +   +  + + L  K    + ++  +
Sbjct: 436 DLIYTE--AEREIRRSLERKWRQHNEMVQKM 464


>gi|326774108|ref|ZP_08233390.1| helicase SNF2 family protein [Actinomyces viscosus C505]
 gi|326636247|gb|EGE37151.1| helicase SNF2 family protein [Actinomyces viscosus C505]
          Length = 1078

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 16/119 (13%)

Query: 91  GRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             + D+       +N       + +L A  A+   G++LQ   + LV F + ++    +Q
Sbjct: 587 STSADEREDIRARFNADPTEEDVRVLVATDAAG-EGIDLQTYCHRLVNFDVPFNPSRLEQ 645

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTID------ELVLQRLRTKSTIQDLLLNALK 199
            + RI      + G +    ++YL    + +      +  L RL  K   +   L A+ 
Sbjct: 646 RVGRID-----RYGQRETPTIFYLAPVASGEGLYAGHQDFLGRLAEKIATETRDLGAVN 699


>gi|301116782|ref|XP_002906119.1| F-box protein, putative [Phytophthora infestans T30-4]
 gi|262107468|gb|EEY65520.1| F-box protein, putative [Phytophthora infestans T30-4]
          Length = 1126

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +     +   +  + +L        HGL+L +  +I +   +W       + +ER  
Sbjct: 883 PEIRMKQLTRFRKDPNVNVLLLT-EVGSHGLDLSFVTHIFLMDEIWD------KSLERQV 935

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           ++R  + G   AV V  L  + +++  +L+
Sbjct: 936 ISRAHRMGANHAVVVEQLWMRGSVESHMLK 965


>gi|242787021|ref|XP_002480920.1| DNA repair helicase rad5,16, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218721067|gb|EED20486.1| DNA repair helicase rad5,16, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1135

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 51   VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKI 109
            +H+  ++  + II     A  I       +     + F       +    I  + N  + 
Sbjct: 926  IHNCLVRKEKQIIWCNFPANQIHVAAVLKECGIDARIFHAKLDYRQRDILIHSFTNTDEC 985

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L    A    GLNL    NI+ F+ L        + +    + R R+ G +  V VY
Sbjct: 986  QILIMSLAVNALGLNLHPRCNIMHFYDLPI-----TKAVMDQAIGRLRRFGQQLVVIVY 1039


>gi|237809165|ref|YP_002893605.1| helicase domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237501426|gb|ACQ94019.1| helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S W                R
Sbjct: 639 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGWNIYTLQ------QAARR 692

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    T     L  +  K  +       + +  + V
Sbjct: 693 SWRIGQKQHVKVIYLGYAATSQMTCLALMAKKILVSQSTSGDVPESGLDV 742


>gi|116751263|ref|YP_847950.1| helicase domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700327|gb|ABK19515.1| helicase domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1058

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 22/125 (17%)

Query: 67  NAAPIIVAYHFNSDLAR-------------LQKAFPQGRTLDKDPCTIQEWNEGK----I 109
           N   +I+   + +  +                         D+       +        +
Sbjct: 524 NGKRVILFTEYRATHSWLHQILTANGYGGDRLMYLHGSMLPDERESVKAAFQAHPDISPV 583

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   +   G++LQ   N L+   + W+    +Q   RI    Q+    + +VF+++
Sbjct: 584 RILLAT-DAASEGIDLQNHCNYLIHVEIPWNPNVMEQRNGRIDRHGQK----EDSVFIWH 638

Query: 170 LIAQN 174
            + + 
Sbjct: 639 PVGKG 643


>gi|322798230|gb|EFZ20022.1| hypothetical protein SINV_13561 [Solenopsis invicta]
          Length = 135

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           + G K+  +VY  +A  T++E +  R  TK ++   +++ 
Sbjct: 22  RFGQKKPCYVYRFLAAKTMEEKIYNRQVTKLSLSCRVVDE 61


>gi|114631893|ref|XP_001150418.1| PREDICTED: helicase, lymphoid-specific isoform 1 [Pan troglodytes]
          Length = 718

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 37/134 (27%), Gaps = 24/134 (17%)

Query: 29  TVKCLQLANGAVYYDEEKHWKE----------VHDEKIKALEVIIEKAN--AAPIIVAYH 76
            +   +  N     +                  +  K   L+ ++ +       +++   
Sbjct: 564 MMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623

Query: 77  FNSDLARLQKAFP----------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNL 125
             S L  L                  +  +    +  +N + ++ +      + G G+NL
Sbjct: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 683

Query: 126 QYGGNILVFFSLWW 139
               + ++ +   W
Sbjct: 684 TA-ADTVIIYDSDW 696


>gi|170110062|ref|XP_001886237.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164638821|gb|EDR03096.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 210

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                +         +   + +I +L  H      GLN+    + +              
Sbjct: 7   CLRIDQNSKGQSAAKKFKTDPEILVLLLHGERENAGLNVT-CASRVFLLE-----SVVHH 60

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
             E   + R  + G  RA  VY   A++T++  +L     
Sbjct: 61  SFEIQAIARIDRMGQTRATEVYCYYAEDTVERNILDLAAR 100


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 52/188 (27%), Gaps = 31/188 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E + A        +  Q+            +   ++EKI  L  +
Sbjct: 250 AYEHMNHPRLVKIETEQVTAD-------RVRQVC-----------YMTANEEKIPLLLGL 291

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           I       IIV  +   +  R+                     K    ++++  G +P+L
Sbjct: 292 IRGWPDGRIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVL 351

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +             +V + L  D E++   I R                 Y    
Sbjct: 352 VGTDVAARGLHI--PDVTHVVNYDLPEDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCL 409

Query: 173 QNTIDELV 180
            + I++ +
Sbjct: 410 LD-IEQYI 416


>gi|315222612|ref|ZP_07864501.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188298|gb|EFU22024.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 2325

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +  +G+I +L       G G N+Q     +    + W   + +Q
Sbjct: 2229 FIHEANTDKQKDELFAKVRKGEIRILIGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQ 2288

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               RI      Q    + V +Y  I +NT D  +  R  
Sbjct: 2289 RSGRIVR----QGNENKEVNIYRYITENTFDAYLWVRHE 2323


>gi|289183836|ref|YP_003457377.1| NPH-1 [Pseudocowpox virus]
 gi|288804308|gb|ADC53973.1| NPH-1 [Pseudocowpox virus]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 91  GRTLDKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            RT D     +  +N        +I +     +       L    N +    + W+    
Sbjct: 415 SRTRDTRAKLVDAFNACDNTDGERIKVCVFSLSGSEGLSFL--SINDIFILDMTWNEASL 472

Query: 145 QQMIERIGVTRQRQA--GFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNA 197
           +Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   
Sbjct: 473 RQIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLDLIRDKSRQFTQLFRV 532

Query: 198 LKK 200
           LK+
Sbjct: 533 LKR 535


>gi|288804176|gb|ADC53842.1| NPH-1 [Pseudocowpox virus]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 91  GRTLDKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            RT D     +  +N        +I +     +       L    N +    + W+    
Sbjct: 415 SRTRDTRAKLVDAFNACDNTDGERIKVCVFSLSGSEGLSFL--SINDIFILDMTWNEASL 472

Query: 145 QQMIERIGVTRQRQA--GFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNA 197
           +Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   
Sbjct: 473 RQIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLDLIRDKSRQFTQLFRV 532

Query: 198 LKK 200
           LK+
Sbjct: 533 LKR 535


>gi|238892834|ref|YP_002917568.1| putative ATP-dependent helicase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545150|dbj|BAH61501.1| putative ATP-dependent helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1046

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 52/226 (23%)

Query: 14  DLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEKHWKEVHDEK--IKALEVIIEKA 66
           +++    EA   A+      T +  Q+ +    + +    +     K  +  +   ++  
Sbjct: 457 EIENAQSEAVEEATHYTQPLTNEQKQILDVLRQWAQVAKNQVDSKAKAILDWINTNLKTN 516

Query: 67  NAAPIIVAYHFNSDLARLQKAF----------------PQGRTLDKDPCTIQEWN----E 106
           N         F       Q                         ++       +      
Sbjct: 517 NQWNEYRVILFTEYRTTHQWMHEILASHGLAGERLAVLHGSMPQEEREKVKAAFQTSPKA 576

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A   +   G++LQ   N L+   + ++    +Q   RI    QRQ    + V 
Sbjct: 577 SAVRILLAT-DAASEGIDLQNYCNYLIHLEIPYNPNVMEQRNGRIDRHGQRQ----KEVV 631

Query: 167 VYYLIAQNTID----------ELVLQRLRTKSTIQDLLLNALKKET 202
           +++ +  + +D          + +L+ LR         L +++ + 
Sbjct: 632 IWHPV--DGVDKVNARIGGHGDDILRALRK--------LESMRADM 667


>gi|148664593|gb|EDK97009.1| mCG1031601 [Mus musculus]
          Length = 76

 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +     R  + G +  V V  L   N+++E +L+  + K  +   ++ 
Sbjct: 1   DLQAQDRAHRIGQQNEVQVLRLCTVNSVEEKILEAAKYKLNVDQKVIQ 48


>gi|315639417|ref|ZP_07894576.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480480|gb|EFU71125.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 2533

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 93   TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
            T  +      + N GKI +L       G G N+Q     L      W   + +Q   R+ 
Sbjct: 2050 TDKQKQDLFDKVNAGKIRILIGSTMKMGAGTNVQKKNVALHELDCPWRPCDLEQRQGRVI 2109

Query: 153  VTR--QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
                   +      +  Y    + T D  + Q    K  
Sbjct: 2110 RQGNEWFEKDKNFCIAHYRYSTEQTYDARMFQVNEQKLK 2148


>gi|120610367|ref|YP_970045.1| DNA methylase N-4/N-6 domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588831|gb|ABM32271.1| DNA methylase N-4/N-6 domain protein [Acidovorax citrulli AAC00-1]
          Length = 835

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK------AFPQGRTLDKDPCTIQEWNEG 107
            +I  +  I++       ++ +    +   LQ       +    + LD+    I  + +G
Sbjct: 300 ARIDKVREIVDADPRDSFVIWHDLEDERHALQDAIPEAVSVWGTQDLDEREDRIVGFGDG 359

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL   P   G G N Q   +  VF  + +   +         + R  + G  + V +
Sbjct: 360 AFRLLSTKPVIAGAGCNFQRHCHREVFAGIGFKFRDFI-----QAIHRVHRFGQTKPVRI 414

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLL 194
             +  +   +  VL++++ K    D +
Sbjct: 415 DIIHTE--AEREVLRKMQEKWRQHDEV 439


>gi|330508278|ref|YP_004384706.1| helicase domain-containing protein [Methanosaeta concilii GP-6]
 gi|328929086|gb|AEB68888.1| helicase domain protein [Methanosaeta concilii GP-6]
          Length = 1149

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           SK  +  ++      + + K    +  E    LE +         +       +      
Sbjct: 475 SKLQRLKEVLKEQGVFADPKMKLLLFTEHKDTLEYLAGDGKDGRPLGK---LREWGLSVT 531

Query: 87  AFPQGRTLDKDPCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               G  +          N  +I      ++ A  A+   G+NLQ+    ++ + + W+ 
Sbjct: 532 QIHGGMKIGDRDTAGTRINAERIFKEDCQVMAATEAAG-EGINLQF-CWFMINYDIPWNP 589

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +Q + RI      + G ++   +   ++  T +  VLQ+L  +    +  L+
Sbjct: 590 MRLEQRMGRI-----HRYGQEKDCLILNFVSIKTREGRVLQKLFQRIEQIEKDLD 639


>gi|300725811|ref|ZP_07059279.1| helicase domain protein [Prevotella bryantii B14]
 gi|299776911|gb|EFI73453.1| helicase domain protein [Prevotella bryantii B14]
          Length = 948

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +     +   GLNLQ+  ++++ + L W+ +  +Q I R       + G K  V V   +
Sbjct: 500 IMIATEAAAEGLNLQF-CSLVINYDLPWNPQRIEQRISRC-----HRYGQKYDVVVVNFL 553

Query: 172 -AQNTIDELVLQRLRTKSTIQDLLLNA 197
             +N  D  V Q L TK  + + +  A
Sbjct: 554 NMRNYADVRVFQLLSTKFKLFNDVFGA 580


>gi|311977958|ref|YP_003987078.1| putative ATP-dependent RNA helicase [Acanthamoeba polyphaga
           mimivirus]
 gi|82057245|sp|Q7T6X3|YR563_MIMIV RecName: Full=Putative ATP-dependent RNA helicase R563
 gi|55664873|gb|AAQ09587.2| helicase conserved C-terminal domain protein [Acanthamoeba
           polyphaga mimivirus]
 gi|308204910|gb|ADO18711.1| putative ATP-dependent RNA helicase [Acanthamoeba polyphaga
           mimivirus]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 29/215 (13%)

Query: 1   MKQYHKFQRE--LYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 58
           +K Y+    E      ++  + +      K  +     NG V+           + K   
Sbjct: 349 LKGYNSLTDEDLTIAKIREYSPKFLKILRKIKR----CNGTVFVY--------SNFKEYG 396

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE------GKIPLL 112
              +  +         Y FN    R    +   +           +N        KI ++
Sbjct: 397 GIRVFARLLEFHRFKNYEFNGSGPRRFAIWSGDQDPIYKEEVKAVFNNKDNEFGSKIKVI 456

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA----GFKRAVFVY 168
               +       L      +     +W+    +Q+I R       +          V++Y
Sbjct: 457 LGSSSIKEGVSFL--RVQEVHIMEPYWNFSRMEQIIGRAIRFCSHKDVELDRQLVKVYIY 514

Query: 169 YLIAQN---TIDELVLQRLRTKSTIQDLLLNALKK 200
             +  +   +IDE +++    K  I      ALK+
Sbjct: 515 LAVHPDIKMSIDERMMKMALDKKMINSAFEKALKE 549


>gi|319955980|ref|YP_004167243.1| hypothetical protein Nitsa_0222 [Nitratifractor salsuginis DSM
           16511]
 gi|319418384|gb|ADV45494.1| hypothetical protein Nitsa_0222 [Nitratifractor salsuginis DSM
           16511]
          Length = 404

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 30/184 (16%)

Query: 5   HKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
              +R+    L G  +  A         C QL  G +                     + 
Sbjct: 235 EMLKRDRVLRLPGGVVFAADTPIGLVNGCYQLECGCLKVG------------------LD 276

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
                   +  Y           A        +       +       +     +   G+
Sbjct: 277 YHDTGEREMAEYIKKRWGDSEDVAIMCRWVGQRRI-----FEREFKKAMILSSHAHAEGV 331

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            L +  +++V  SL +     QQ   R    ++     K  + V+ L+++  + E V Q 
Sbjct: 332 ELSHIEHLIV-ASLDYSTARFQQRNARQASKQR-----KSPINVHILLSRGNVSEAVYQA 385

Query: 184 LRTK 187
           +  K
Sbjct: 386 VALK 389


>gi|154294191|ref|XP_001547538.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150845033|gb|EDN20226.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 1150

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 53/182 (29%), Gaps = 21/182 (11%)

Query: 2    KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
            K Y    +  E    +      A  + +K+ K   L              +V + K K  
Sbjct: 941  KFYKSRPKGAEYIPSIANRLQMAQITLAKSEKLRAL------------IVQVDEWKSKGE 988

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPA 117
              ++               + L     +     T +     I ++N+    + +L     
Sbjct: 989  RCLVFVNWPISQWACEQVLTLLEYKVMSLLSSHTSEDRRRIIAQFNDPNHKVDVLLIGFK 1048

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               +GLN       ++       ++   Q+  R+      + G K+   +     +++ D
Sbjct: 1049 LGSYGLNFHGCCCKMIIMEYPSSIDILLQVFGRL-----HRLGQKKEQEIIIFFLEDSFD 1103

Query: 178  EL 179
              
Sbjct: 1104 GK 1105


>gi|312374467|gb|EFR22018.1| hypothetical protein AND_15887 [Anopheles darlingi]
          Length = 606

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +R  + G    V V YL+A  T D+++   L+ K  I   +
Sbjct: 472 QAESRAHRIGQMDNVTVRYLLAHKTADDIIWAMLQRKQDILTKV 515


>gi|304310353|ref|YP_003809951.1| Superfamily II DNA/RNA helicases, SNF2 family [gamma
           proteobacterium HdN1]
 gi|301796086|emb|CBL44290.1| Superfamily II DNA/RNA helicases, SNF2 family [gamma
           proteobacterium HdN1]
          Length = 926

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 69  APIIVAYHFNSDLARLQKAFPQ------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              I   H+ +D  R               T ++    ++   EG   +L A       G
Sbjct: 480 CRYIATAHYVADHLRKALPKATIESITGEYTPEERRERVEAMEEGDTRILVAT-DCLSEG 538

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVL 181
           +NLQ+    ++ + L W+   H+Q   R+    Q        V    L  Q+  +D  VL
Sbjct: 539 INLQHLFTAVIHYDLAWNPTRHEQREGRVDRFGQ----QAAEVRCTMLYGQDNPVDGFVL 594

Query: 182 QRLRTK 187
             +  K
Sbjct: 595 NVILRK 600


>gi|238596081|ref|XP_002393956.1| hypothetical protein MPER_06230 [Moniliophthora perniciosa FA553]
 gi|215462197|gb|EEB94886.1| hypothetical protein MPER_06230 [Moniliophthora perniciosa FA553]
          Length = 277

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 50/188 (26%), Gaps = 42/188 (22%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-- 83
           A++  +        +     +    V  +    ++ ++  +     ++       LA   
Sbjct: 36  ATRESRLANPCLHPI-----RISSSVSSKLNYIIDDVLRHSADEKYLIFSESELTLAHVA 90

Query: 84  ---------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                      +   Q     ++ C +         +          GLNL    + ++F
Sbjct: 91  EGLQLAGVKFLRFTTQVPQQVREQCVLTFETSDLYRVFLMELKHGARGLNL-ITASRVIF 149

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF--------------------VYYLIAQN 174
                     Q  +E   + R  + G  R V                     V  L  + 
Sbjct: 150 CEP-----VWQADVESQAIKRAHRIGQTRPVHGEIIVHLQIWFSGDVHVNPLVKTLAIRG 204

Query: 175 TIDELVLQ 182
           T ++ +L+
Sbjct: 205 TAEDKMLE 212


>gi|190344733|gb|EDK36473.2| hypothetical protein PGUG_00571 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1263

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGLN+      + F S  W      + +E   + R  + G  +AV V  LI
Sbjct: 1058 LIMDINLAAHGLNITA-ATHVYFTSPVWS-----RSVEAQAIKRAHRIGQTKAVRVETLI 1111

Query: 172  AQNTIDELVLQRLRT 186
             +NT++E + ++   
Sbjct: 1112 LKNTLEEEIYRKRSQ 1126


>gi|86741418|ref|YP_481818.1| helicase-like protein [Frankia sp. CcI3]
 gi|86568280|gb|ABD12089.1| helicase-like [Frankia sp. CcI3]
          Length = 1165

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 54/135 (40%), Gaps = 26/135 (19%)

Query: 89  PQGRTLDKDPCTIQEWNEGKI----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G ++D+       +          +L A   +   G++LQ   + LV + + ++  + 
Sbjct: 658 HGGLSVDEREQLRLAFQAEPSEHPMRVLLAT-DAASEGIDLQNHCHRLVNYDIPFNPNKL 716

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA---QNTID---------ELVLQRLRT-KSTI- 190
           +Q I RI    QR++       + + +      ++D           V++++   K+ + 
Sbjct: 717 EQRIGRIDRYGQRRSP-----EIRHFVGSGWSGSVDSFEADLEFLSRVVKKVAQMKADLG 771

Query: 191 -QDLLL-NALKKETI 203
             + +L + +++  +
Sbjct: 772 SVNAVLSDRVQRRML 786


>gi|325073684|gb|ADY76737.1| PP62 [Orf virus]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 91  GRTLDKDPCTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            RT D     +  +N         I +     +       L    N +    + W+    
Sbjct: 415 SRTRDTRAKLVDAFNACDNTDGEKIKVCVFSLSGSEGLSFL--SINDIFILDMTWNEASL 472

Query: 145 QQMIERIGVTRQRQA--GFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNA 197
           +Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   
Sbjct: 473 RQIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLALIRDKSRQFTQLFRV 532

Query: 198 LKK 200
           LK+
Sbjct: 533 LKR 535


>gi|41057135|ref|NP_957849.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|41018559|gb|AAR98167.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|41018692|gb|AAR98297.1| ORF072 transcription termination factor NPH-I [Orf virus]
 gi|74230784|gb|ABA00589.1| NPH-1 [Orf virus]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 91  GRTLDKDPCTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            RT D     +  +N         I +     +       L    N +    + W+    
Sbjct: 415 SRTRDTRAKLVDAFNACDNTDGEKIKVCVFSLSGSEGLSFL--SINDIFILDMTWNEASL 472

Query: 145 QQMIERIGVTRQRQA--GFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDLLLNA 197
           +Q++ R       +     +R V V++++A+      T+DE +L  +R KS     L   
Sbjct: 473 RQIVGRAVRLNSHEMTPPDRRYVNVHFVVARQDSGAATVDEDLLALIRDKSRQFTQLFRV 532

Query: 198 LKK 200
           LK+
Sbjct: 533 LKR 535


>gi|14521088|ref|NP_126563.1| putative deah atp-dependent helicase [Pyrococcus abyssi GE5]
 gi|5458305|emb|CAB49794.1| Putative DEAH ATP-dependent helicase [Pyrococcus abyssi GE5]
          Length = 973

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 16/197 (8%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +++Y    +E       E ++         K   +AN    + E      +  E    LE
Sbjct: 353 IEEYSAVLQESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLE 412

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            + +   +   +                  G    K    I+++ +     L        
Sbjct: 413 YLRKNLPSLAGLS--------DEDVSILHGGMPSGKVEEEIRKFEKHGK--LLISTDVAS 462

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GLNLQ   N+L+ +   W   + +Q + R+      +   KR V  Y +     +D  V
Sbjct: 463 EGLNLQ-VANVLINYEAPWTPIKLEQRVGRVW-----RINQKRDVKAYTIFLDTEVDMYV 516

Query: 181 LQRLRTKSTIQDLLLNA 197
           L  L  K       +  
Sbjct: 517 LNNLYRKIMNIKEAIGG 533


>gi|242210463|ref|XP_002471074.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729864|gb|EED83731.1| predicted protein [Postia placenta Mad-698-R]
          Length = 833

 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 92  RTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K    ++++  G      LL    A    G+NL     IL+     W  ++ QQ+I
Sbjct: 344 MPPAKRAAMLKQFARGGRDGARLLILS-AVGLVGVNL-AIACILIIVDTLWSAQQDQQLI 401

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            R+      +    + V VY LIA+NT D
Sbjct: 402 GRLW-----RDPQAKQVLVYRLIARNTSD 425


>gi|254003169|ref|YP_003052635.1| N-6 DNA methylase [Methylovorus sp. SIP3-4]
 gi|253987252|gb|ACT52108.1| N-6 DNA methylase [Methylovorus sp. SIP3-4]
          Length = 1798

 Score = 44.4 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 12/131 (9%)

Query: 83   RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
               +     +T  +      E N G   +L    A  G G N+Q            W   
Sbjct: 1306 HQIRFIHDAKTDLQKSKLFDEMNRGVARILLGSTAKMGAGTNVQKKLVAEHHLDAPWRPS 1365

Query: 143  EHQQMIERIGVTR---QRQAGFKRAVFVYYLIAQNTIDELVLQRLR---------TKSTI 190
            + +Q   RI         +      V +     + T D  + Q +           K   
Sbjct: 1366 DLEQREGRIIRQGNEFYEEDPDGFEVQLLRYATEKTYDGRMWQTIEVKASGIEQFRKGDA 1425

Query: 191  QDLLLNALKKE 201
               ++  +  E
Sbjct: 1426 LQRVIEDISSE 1436


>gi|229021209|ref|ZP_04177848.1| hypothetical protein bcere0030_56290 [Bacillus cereus AH1273]
 gi|229027226|ref|ZP_04183496.1| hypothetical protein bcere0029_54620 [Bacillus cereus AH1272]
 gi|228734077|gb|EEL84801.1| hypothetical protein bcere0029_54620 [Bacillus cereus AH1272]
 gi|228740103|gb|EEL90461.1| hypothetical protein bcere0030_56290 [Bacillus cereus AH1273]
          Length = 560

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 286 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 339

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 340 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|190015064|ref|YP_001966555.1| conserved hypothetical protein [Bacillus cereus]
 gi|190015330|ref|YP_001966881.1| hypothetical protein pPER272_0010 [Bacillus cereus]
 gi|218848219|ref|YP_002454899.1| hypothetical protein BCAH820_B0012 [Bacillus cereus AH820]
 gi|116584740|gb|ABK00855.1| conserved hypothetical protein [Bacillus cereus]
 gi|116585011|gb|ABK01120.1| conserved hypothetical protein [Bacillus cereus]
 gi|218540270|gb|ACK92666.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 562

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 286 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 339

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 340 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|330468260|ref|YP_004406003.1| helicase SNF2 family protein [Verrucosispora maris AB-18-032]
 gi|328811231|gb|AEB45403.1| helicase SNF2 family protein [Verrucosispora maris AB-18-032]
          Length = 939

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             G     +   +QE+      + L         G+NL    + L+ + + W L   +Q 
Sbjct: 475 HGGVADSDEQQILQEFELAGSGVRLLFTGDVASEGVNLHQQCHHLIHYDIPWSLIRIEQR 534

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIA---QNTIDEL-VLQRLRTKSTIQDLLLNALKKETI 203
             RI    QR     RA+    L+    ++  D+  V + L  +       L +++  T 
Sbjct: 535 NGRIDRYGQRHQPQFRAL----LLTSAREDAKDDRTVSEVLLRREETAHRTLGSVEAATG 590

Query: 204 H 204
           H
Sbjct: 591 H 591


>gi|206601479|gb|EDZ37964.1| superfamily II DNA/RNA helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 957

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             +++   +    + +   +         G+NLQ   + ++ + L W+   H+Q   R+ 
Sbjct: 527 PEEREERIMDLGEKSQGSRILVATDCLSEGINLQQYFDAVIHYDLSWNPTRHEQREGRVD 586

Query: 153 VTRQRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTKSTIQDL 193
              Q     K +V V  Y  A N +D  VL+ +  K+     
Sbjct: 587 RFGQP----KSSVRVILYYGANNPVDGAVLKVILRKANQIRK 624


>gi|323455802|gb|EGB11670.1| hypothetical protein AURANDRAFT_9232 [Aureococcus anophagefferens]
          Length = 63

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
              GL L +  N  V              IE     R  + G  +A  V  LI  +T++E
Sbjct: 1   GAAGLTLTH-ANTAVILEPSLTPG-----IEAQAAGRISRIGQTKAAKVIRLIVADTVEE 54

Query: 179 LVLQRLRTK 187
            +L+    +
Sbjct: 55  KILEWQARR 63


>gi|147834946|emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera]
          Length = 985

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 53/197 (26%), Gaps = 56/197 (28%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE------------------------- 44
           +    +  E ++     +      +L N      +                         
Sbjct: 459 KNVKKVINEEMKQSKILAYITALKKLCNHPKLIYDTVKSGNPGTSGFEDCMRFFPPEMFS 518

Query: 45  ----------------EKHWKEVHDEKIKALEVI--IEKANAAPIIVAYHFNSDLARLQK 86
                           E  W E+  +      ++  + +     I++  ++   L    +
Sbjct: 519 GRLLFLCVRSGAWTGGEGIWVELSGKMHVLARLLAHLRQKTDDRIVLVSNYTQTLDLFAQ 578

Query: 87  AFPQGRTLD----------KDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVF 134
              + R             K    +  +N+      +      + G GLNL  GGN LV 
Sbjct: 579 LCRERRYPYLRLDGTTSINKRQKLVNRFNDPLKDEFVFLLSSKAGGCGLNL-IGGNRLVL 637

Query: 135 FSLWWDLEEHQQMIERI 151
           F   W+    +Q+ +R 
Sbjct: 638 FDPDWNPANDKQVFQRQ 654


>gi|124021752|ref|YP_001016059.1| superfamily II DNA/RNA helicases, SNF2 family protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962038|gb|ABM76794.1| Superfamily II DNA/RNA helicases, SNF2 family protein
           [Prochlorococcus marinus str. MIT 9303]
          Length = 542

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +      Q+A                  K+ A+E ++    A    +++   F   L  
Sbjct: 359 LAVLTALRQIAAEF---------------KLPAVETVVAALLAEGQAVVLFSSFVGPLLL 403

Query: 84  LQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           LQ+         +         +  +  G   LL A  A  G G  L      +V     
Sbjct: 404 LQQRLGGELLTGRQRPGQRQEAVNRFQSGLSSLLLATYAVGGLGYTLHR-ARHVVLLERH 462

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA- 197
           W   +  Q  +R                 ++       D+LV   + +K+   ++LL + 
Sbjct: 463 WTPGDVDQAEDRCHRLGMDGGLTS-----HWFQL-GFADQLVDALIASKAERIEVLLGSR 516

Query: 198 ---LKKETIHV 205
              LK++ + V
Sbjct: 517 RVGLKRQPLPV 527


>gi|197286326|ref|YP_002152198.1| plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
 gi|194683813|emb|CAR44896.1| putative plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
          Length = 987

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 100 TIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++E+ +    L L         G+NL +  + +V F + W L   QQ   RI      +
Sbjct: 520 VVEEFGKENSKLRLLVCSDVASEGINLHHLSHKMVHFDVPWSLMVFQQRNGRI-----DR 574

Query: 159 AGFKRAVFVYYLIAQN-----TIDELVLQRLRTKSTIQDL 193
            G K    + YL+ Q+     + D  VL+ L  K      
Sbjct: 575 YGQKHQPEIRYLLTQSDNPRISGDTRVLEVLINKDDQAQK 614


>gi|208702017|ref|YP_002267502.1| hypothetical protein BCH308197_A0251 [Bacillus cereus H3081.97]
 gi|208657872|gb|ACI30242.1| conserved hypothetical protein [Bacillus cereus H3081.97]
          Length = 560

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 286 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 339

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 340 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 381


>gi|325678768|ref|ZP_08158368.1| hypothetical protein CUS_4284 [Ruminococcus albus 8]
 gi|324109537|gb|EGC03753.1| hypothetical protein CUS_4284 [Ruminococcus albus 8]
          Length = 87

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L    A  G G N+Q     +    + W   + +Q   RI      Q    + V ++  +
Sbjct: 2   LLGSTAKMGTGTNVQKKLIAVHDLDIPWRPADLEQRAGRIIR----QGNENKQVQIFRYV 57

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
            + T D    Q L  K      ++ +
Sbjct: 58  TKGTFDAYSYQTLENKQKFISQIMTS 83


>gi|212528896|ref|XP_002144605.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074003|gb|EEA28090.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 2140

 Score = 44.4 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM-IE 149
            G T  +    I+ +      +   H  +           N ++FF+ +     ++     
Sbjct: 2009 GTTGRRGRNRIKTFAGHDKKVAILHLGTENAAGLNLQNANHVIFFAPFAAKSHYEYQSTI 2068

Query: 150  RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 R  + G K+ V ++ L+  NT++  +LQ
Sbjct: 2069 TQSSGRVIRFGQKKEVHIWNLVTLNTLEVGILQ 2101


>gi|167851521|ref|ZP_02477029.1| SNF2-related:Helicase, C-terminal [Burkholderia pseudomallei B7210]
          Length = 995

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 56/163 (34%), Gaps = 38/163 (23%)

Query: 65  KANAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN----EG 107
           + N   +I+   + +    + +                   + ++       +     + 
Sbjct: 469 EWNDRRVILFTEYRTTHQWMHQILASHGFGGERLGLLHGSLSQEEREPIKAAFQASPQDS 528

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + +L A   +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +
Sbjct: 529 PVRILLAT-DAASEGIDLQNHCNRLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLI 583

Query: 168 YYLI--------AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           ++ +        +     E +L+ LR         L++++ + 
Sbjct: 584 WHPVDGGDASGASVGGHGEDILRALRK--------LDSMRADM 618


>gi|325300601|ref|YP_004260518.1| helicase domain-containing protein [Bacteroides salanitronis DSM
            18170]
 gi|324320154|gb|ADY38045.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1671

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T        +  N G I +LF   +  G G+N Q     +    + W   + +
Sbjct: 1296 QFIQTAKTEKARKKIFEGMNNGTIRVLFGSTSMLGTGVNAQQRAVAVHHLEIPWRPADLE 1355

Query: 146  QMIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R        +      V +     + T+D      LR K    + +
Sbjct: 1356 QRNGRAVRKGNTVKLWGGNVVDIIIYGTEKTLDAYKFNLLRNKQLFINQI 1405


>gi|70607084|ref|YP_255954.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
 gi|68567732|gb|AAY80661.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
          Length = 467

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 29/209 (13%)

Query: 2   KQYHKFQR--ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           K+Y + ++  EL    +  + +A  +        +L N             +  +KI A+
Sbjct: 281 KKYSRSRKVSELLMLAKKGDSDAIEALKIYNDMRKLVN-------------LAKQKIDAV 327

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-----GRTLDKDPCTIQEWNEGKIPLLFA 114
           + I+EK     I++   +      + +           +  +    +  +   K  +L  
Sbjct: 328 KRIVEKEKGNKILIFTQYVDQAEEIARTINGLLITGKISKSERERILNIFKSMKSGVLVL 387

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
                     L      +             +      + R  + G  +   +Y ++ + 
Sbjct: 388 TTV---GDEGLDIPDANVGIIVT----GTGSRRQFIQRLGRLLRPGVDKKARLYEIMVRG 440

Query: 175 TIDELVLQRLRTKSTIQDLLLNALKKETI 203
           T +E   Q L+ K T  D+ L++ + + I
Sbjct: 441 TAEE--YQALKRKETQMDMFLSSAEDDDI 467


>gi|33862310|ref|NP_893870.1| SNF2/helicase domain-containing protein [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640423|emb|CAE20212.1| SWI/SNF family helicase_2 [Prochlorococcus marinus str. MIT 9313]
          Length = 542

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLAR 83
            +      Q+A                  K+ A+E ++    A    +++   F   L  
Sbjct: 359 LAVLTALRQIAAEF---------------KLPAVETVVAALLAEGQAVVLFSSFVGPLLL 403

Query: 84  LQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           LQ+         +         +  +  G   LL A  A  G G  L      +V     
Sbjct: 404 LQQRLGGELLTGRQRPGQRQEAVNRFQSGMSSLLLATYAVGGLGYTLHR-ARHVVLLERH 462

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA- 197
           W   +  Q  +R                 ++       D+LV   + +K+   ++LL + 
Sbjct: 463 WTPGDVDQAEDRCHRLGMDGGLTS-----HWFQL-GFADQLVDSLIASKAERIEVLLGSR 516

Query: 198 ---LKKETIHV 205
              LK++ + V
Sbjct: 517 RVGLKRQPLPV 527


>gi|297580117|ref|ZP_06942044.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535763|gb|EFH74597.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 4236

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2483 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2542

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2543 REGRIVRQGNEFYQRAANAGKPENFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2597


>gi|126433431|ref|YP_001069122.1| putative helicase [Mycobacterium sp. JLS]
 gi|126233231|gb|ABN96631.1| putative helicase [Mycobacterium sp. JLS]
          Length = 565

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +V + L W+    +Q   RI      + G K    ++ ++A++T +  V +RL  K   Q
Sbjct: 1   MVNYDLPWNPNRIEQRFGRI-----HRIGQKNVCQLWNMVARDTREGEVFRRLLDKIQEQ 55

Query: 192 DL 193
             
Sbjct: 56  RA 57


>gi|220936000|ref|YP_002514899.1| DEAD-like helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997310|gb|ACL73912.1| DEAD-like helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 756

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    T     L  +  K T+       + +  + V
Sbjct: 689 SWRIGQKQPVRVIYLGYAATSQMTCLGLMAKKITVSQSTSGDVPESGLDV 738


>gi|149240015|ref|XP_001525883.1| hypothetical protein LELG_02441 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146450006|gb|EDK44262.1| hypothetical protein LELG_02441 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1729

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 8/113 (7%)

Query: 78   NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFF 135
               L R +       +       ++ +      +        +   GL L      +   
Sbjct: 1557 TKQLKRPRGGQGAMHSASTRTDPVELFKNPANKITCFLLDANAQASGLTLTN-ATHIFLC 1615

Query: 136  SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                +            ++R  + G  R   V+     NT++E V+     K 
Sbjct: 1616 EPLINTSLEL-----QAISRVHRIGQTRPTTVWMFTIANTVEESVVLTATRKR 1663


>gi|269126774|ref|YP_003300144.1| helicase domain-containing protein [Thermomonospora curvata DSM
           43183]
 gi|268311732|gb|ACY98106.1| helicase domain protein [Thermomonospora curvata DSM 43183]
          Length = 1038

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 92  RTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            T          +     E  + +L A   +   G++LQ   + LV + + ++  + +Q 
Sbjct: 549 MTAQDREKLRLAFQKSPAEHPVRILLAT-DAASEGIDLQNHCHRLVNYDIPFNPNKLEQR 607

Query: 148 IERIGVTRQRQAGFKRAVFVYYLI------AQNTIDELV--LQRLRTKSTIQDLLLNALK 199
           I RI      + G K    + + +      A ++ +  +  L R+  K    +  L  + 
Sbjct: 608 IGRID-----RYGQKHTPEIRHFVGTGWDKAVDSYEADLEFLSRVAKKVAQMEEDLGQVN 662

Query: 200 K 200
            
Sbjct: 663 A 663


>gi|169609236|ref|XP_001798037.1| hypothetical protein SNOG_07705 [Phaeosphaeria nodorum SN15]
 gi|111064051|gb|EAT85171.1| hypothetical protein SNOG_07705 [Phaeosphaeria nodorum SN15]
          Length = 822

 Score = 44.4 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGG 129
           +    +          F    +  +      ++        ++ A P + G+GL L    
Sbjct: 678 LYRSKWAHKAGVEVLRFDGTTSSQERADRKLQFETKTTFTKIMLATPGAGGYGLEL-STA 736

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKS 188
             ++    WW+        ER   +R  + G    V V+   A N+ ID L L     K+
Sbjct: 737 QHVLQLEPWWN-----HNKERQAWSRTHRQGNLNPVTVWRFSASNSLIDSLFLAIAGKKT 791

Query: 189 TIQDLLLNALK 199
            + + ++  L+
Sbjct: 792 IVNESVMKYLR 802


>gi|190404406|ref|YP_001961037.1| rcorf62 [Agrobacterium rhizogenes]
 gi|158322202|gb|ABW33619.1| rcorf62 [Agrobacterium rhizogenes]
          Length = 1702

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)

Query: 10   ELYCDLQGENIEAFNSASKTVK--CL--QLANGAVYYDEEKHWKEVHDEKIKALEVI-IE 64
            +L   +   + E  N  +  V+      Q  +   Y   +    ++          +   
Sbjct: 1254 DLRLVIPANDNEEDNKLNLLVRNAFRIWQETSDDTYVRPDGKPFDLPGAAQMIFSDLGTI 1313

Query: 65   KANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPA 117
                     AY +  D    L          +   K     + +     G+I  L     
Sbjct: 1314 NVEKTRGFSAYRWIRDEFVRLGVPPSEIAFMQDYKKTEAKQRLFADVRAGRIRFLIGSSE 1373

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+N Q     L    + W     +Q   RI      Q      V ++    + ++D
Sbjct: 1374 TMGTGVNAQARLKALHHLDVPWLPSHIEQREGRIVR----QGNQHDVVDIFAYATEGSLD 1429

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
              + Q    K+      L+ 
Sbjct: 1430 ASMWQNNERKARFIAAALSG 1449


>gi|161528452|ref|YP_001582278.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339753|gb|ABX12840.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 502

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 26/177 (14%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------- 87
           AV+  +E   + +   KI  L+ IIE       ++   +   +  +              
Sbjct: 318 AVHLAKEAQSRGIEHSKIPKLKDIIESVPG-KALIFTSYRDSVDLIHSKLTELGVSAGIL 376

Query: 88  ----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  G    K    +Q++ +G   +L A       GL++    N ++F+        
Sbjct: 377 IGKAGETGLKQKKQIEIVQKFRDGIFDVLIAT-RVGEEGLDI-AEVNQVIFYDNVPS--- 431

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             + I+R     + + G K    +  LIA+NTIDE      + K +    + + + K
Sbjct: 432 SVRFIQR-----RGRTGRKDTGKLVVLIAKNTIDETYYWIGKRKMSASKAMGDKMTK 483


>gi|255725018|ref|XP_002547438.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240135329|gb|EER34883.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 1667

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 11/148 (7%)

Query: 46   KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ--- 102
            K    +  +      +I  +      I+      +               +    I+   
Sbjct: 1444 KQVSFLKSKDPNVQIIIFSQWQDMLFIIGNALKDNRISYMGMNSSVNPDHRRKQLIEDEA 1503

Query: 103  --EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
                    +        +   GL L      +       ++    Q I RI      + G
Sbjct: 1504 SYFKRHNGVTCFLLDAKAQASGLTLTN-ATHIFLCEPLVNISLELQAISRI-----HRIG 1557

Query: 161  FKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             K+   V+    +NTI+E ++     K 
Sbjct: 1558 QKKKTTVWMFAIENTIEESIIITSTDKR 1585


>gi|84516121|ref|ZP_01003481.1| ATP-dependent helicase HepA [Loktanella vestfoldensis SKA53]
 gi|84509817|gb|EAQ06274.1| ATP-dependent helicase HepA [Loktanella vestfoldensis SKA53]
          Length = 823

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++    ++E    +  +L A       G+NLQ   + ++ + L W+   HQQ   R
Sbjct: 391 SIPSEEREIRVEELGGHENRILVAT-DCLSEGINLQGWFDAVIHYDLSWNPTRHQQREGR 449

Query: 151 IGVTRQRQAGFKRAVFVYYLIA--QNTIDELVLQRLRTKST 189
           I      + G K  V    L+    N +D  VL+ +  K+ 
Sbjct: 450 ID-----RFGQKAPVVRSILMYGENNPVDGAVLEVIIRKAE 485


>gi|229528263|ref|ZP_04417654.1| DNA methylase [Vibrio cholerae 12129(1)]
 gi|229334625|gb|EEO00111.1| DNA methylase [Vibrio cholerae 12129(1)]
          Length = 3368

 Score = 44.4 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2487 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2546

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2547 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2601


>gi|221635687|ref|YP_002523563.1| helicase, Snf2 family [Thermomicrobium roseum DSM 5159]
 gi|221157442|gb|ACM06560.1| helicase, Snf2 family [Thermomicrobium roseum DSM 5159]
          Length = 900

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T        +    G++ +L     +   GLNLQ  G ++    L W+    +Q   RI 
Sbjct: 736 TRVGRDVLKERVQRGELRILVGT-DAASEGLNLQRLGTLIN-VDLPWNPTRLEQRKGRIQ 793

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
              Q +A     VF+  L  + ++++ V Q L  +      +   L
Sbjct: 794 RIGQPRAV----VFLCNLRYRGSVEDRVHQLLSARFRAIHDMFGQL 835


>gi|116255163|ref|YP_770997.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259811|emb|CAK02905.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1696

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 12/170 (7%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSD----LARLQKAFPQ 90
               AVY   +    E+          +            AY F  D    L         
Sbjct: 1280 TGDAVYRRPDGKDFELPGAAQMIFSDLGTMNVEKTRGFSAYRFIRDELIRLGVPAAEIAF 1339

Query: 91   GRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +   K     + +     GK+  L     + G G+N Q     L    + W   + +Q 
Sbjct: 1340 MQDYKKTEAKQRLFGDVRAGKVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQIEQR 1399

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
              RI      Q      V ++    + ++D  + Q    K+      L+ 
Sbjct: 1400 EGRIVR----QGNQHDEVDIFAYATEGSLDASMWQNNERKARFIAAALSG 1445


>gi|220930423|ref|YP_002507332.1| helicase [Clostridium cellulolyticum H10]
 gi|220000751|gb|ACL77352.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 460

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           +++G++  L   P+  G G+N Q   + ++F  L    E++        V R  + G K+
Sbjct: 331 FSKGEVKDLVTKPSIAGFGMNWQT-CSDMIFVGLSDSYEQYY-----QAVRRCYRFGQKK 384

Query: 164 AVFVYYLIA--QNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V V+ +I+  +  + + + ++      +Q+ ++   K+
Sbjct: 385 PVNVHIVISAKEGCVKDNIERKTSDSLKMQNAMIEYTKE 423


>gi|70732026|ref|YP_261773.1| hypothetical protein PFL_4690 [Pseudomonas fluorescens Pf-5]
 gi|68346325|gb|AAY93931.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 749

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L     I+ F    +++   Q         R
Sbjct: 627 RREDWILDQVDRGIDVLITNPELVKTGLDLLDFPTIV-FLQTGYNVYTLQ-----QAARR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +L    +     LQ +  K  +            L++L ++   V
Sbjct: 681 SWRIGQKHPVRVIFLGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 738


>gi|22331785|ref|NP_680129.1| SNF2 domain-containing protein / helicase domain-containing protein /
            F-box family protein [Arabidopsis thaliana]
 gi|75181828|sp|Q9M1I1|FB304_ARATH RecName: Full=F-box protein At3g54460
 gi|7258349|emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana]
 gi|20259494|gb|AAM13867.1| unknown protein [Arabidopsis thaliana]
 gi|28393845|gb|AAO42330.1| unknown protein [Arabidopsis thaliana]
 gi|110742559|dbj|BAE99194.1| RING finger -like protein [Arabidopsis thaliana]
          Length = 1378

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 70   PIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
             +++   F   +  +++            +   ++ +K        N+     L     S
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLM-DGS 1253

Query: 119  CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
               GL+L +  ++ +   +W       + +E   ++R  + G KR +FV  L  + TI+E
Sbjct: 1254 GALGLDLSFVTHVFLMEPIWD------KSLEEQVISRAHRMGAKRPIFVETLTMRGTIEE 1307

Query: 179  LVLQRLR--TKST--IQDLLLNALKKETIH 204
             +++ L    KS   +    + A K+ET  
Sbjct: 1308 QMMRFLEDAEKSDRLLSGDYIEA-KQETTR 1336


>gi|328541568|ref|YP_004301678.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
 gi|326415710|gb|ADZ72772.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
          Length = 1713

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 12/166 (7%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSD----LARLQKAFPQGRTL 94
            +Y   +    E+          +            AY +  D    +          +  
Sbjct: 1299 IYLRPDGKPYELPGAAQMIFSDLGTINVEKTRGFSAYRWIRDELIRMGVPATEIAFMQDF 1358

Query: 95   DKDPCTIQEW---NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             K     + +     GK+  L     + G G+N Q     L    + W   + +Q   RI
Sbjct: 1359 KKTEAKQRLFGDVRAGKVRFLIGSSETMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRI 1418

Query: 152  GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                  Q      V +Y    Q ++D  + Q    K+      L+ 
Sbjct: 1419 VR----QGNQHDEVDIYAYATQGSLDATMWQNNERKARFIAAALSG 1460


>gi|242216380|ref|XP_002473998.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726863|gb|EED80799.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1043

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 92  RTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               K    ++++  G      LL    A    G+NL     IL+     W  ++ QQ+I
Sbjct: 598 MPPAKRAAMLKQFARGGRDGARLLILS-AVGLVGVNL-AIACILIIVDTLWSAQQDQQLI 655

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            R+      +    + V VY LIA+NT D
Sbjct: 656 GRLW-----RDPQAKQVLVYRLIARNTSD 679


>gi|331213411|ref|XP_003319387.1| DNA repair and recombination protein RAD5C [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309298377|gb|EFP74968.1| DNA repair and recombination protein RAD5C [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 669

 Score = 44.0 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 19/133 (14%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEV----IIEKANAAPIIV 73
           ++ +   + V   QL N     ++EK           KI  L       +   N A  ++
Sbjct: 499 DSSHFFGELVNLRQLCNHPALIEKEKGTGGYFWNQSSKIVHLLKDLSLFLASGNQARAVI 558

Query: 74  AYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              F   L            +    + +     +         +    +L A   + G G
Sbjct: 559 FSEFKRFLQIIEIALNERGIQFTTHYGKMDNDTRRKNLEYFRRDVSCKVLLATIKTAGVG 618

Query: 123 LNLQYGGNILVFF 135
           ++L    + +   
Sbjct: 619 IDL-RCAHKVYLM 630


>gi|169615006|ref|XP_001800919.1| hypothetical protein SNOG_10656 [Phaeosphaeria nodorum SN15]
 gi|111060930|gb|EAT82050.1| hypothetical protein SNOG_10656 [Phaeosphaeria nodorum SN15]
          Length = 682

 Score = 44.0 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 11/155 (7%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI--QEWNEG 107
           E  D       +I++++     +V   F +    ++     GR   +    I  +    G
Sbjct: 524 ECRDRDPDCSVIIMDESVYFLDVVQIAFEAMYDPIECLRYDGREFAERRPAIQAEFDKSG 583

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              ++       G GLN+    N+++    WW  E          + R  + G KRAV  
Sbjct: 584 GHKVMLMSRGVGGLGLNIPS-ANVIIQCCPWWKREWEV-----QAMGRAYREGQKRAVTY 637

Query: 168 YYLIAQNTIDELVL--QRLRTKSTIQDLLLNALKK 200
             L A N+  E +   +    K T    ++ AL +
Sbjct: 638 IKLTATNSHAE-IYKTKTRDRKHTYNSRVVKALTR 671


>gi|33864575|ref|NP_896134.1| helicase [Synechococcus sp. WH 8102]
 gi|33632098|emb|CAE06554.1| possible helicase [Synechococcus sp. WH 8102]
          Length = 539

 Score = 44.0 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 33/200 (16%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
             F+R     L+GE        +      ++A                  K+ A E ++ 
Sbjct: 343 DDFRRRA---LKGEVRSDAEPLAVLTALRRVAAEF---------------KLPAAETLVR 384

Query: 65  K--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPA 117
                   +++   F   L  LQ+         +         +  + +G   LL A   
Sbjct: 385 TLLQAGEAVVLFSGFVEPLQLLQQRLGGALLTGRQRPVERQQAVDCFQQGGEDLLLATFG 444

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV-FVYYLIAQNTI 176
           +   G  L      +V     W   +           R  + G +  V   ++L      
Sbjct: 445 TGALGFTLHR-ARHVVLLERPWTPGDV-----AQAEDRCHRLGMEDEVLTCHWLQL-GPA 497

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           D+LV   + +K+   ++LL 
Sbjct: 498 DQLVDGLVASKAERIEILLG 517


>gi|169825485|ref|YP_001695660.1| putative helicase [Lysinibacillus sphaericus C3-41]
 gi|168994762|gb|ACA42301.1| putative helicase [Lysinibacillus sphaericus C3-41]
          Length = 998

 Score = 44.0 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 21/181 (11%)

Query: 25  SASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARL 84
              +    L+       ++E +  +     K   +  +I+K +   I+        + R 
Sbjct: 779 IIQQLNSLLKACVNPQEFNEYRSHQMP--SKAVKMLDMIQKWSNDYIVFGCTHIKTVERY 836

Query: 85  QKAFPQGRTL-------------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +                      ++    I+E  + K  +L     S    +N+ +  NI
Sbjct: 837 EAYIRNAFPDRPLFVITGDKTSLNRRKAIIKELKQSKRGILICTQQSLSSSMNIDFVNNI 896

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +    + W+     Q   R       +      V V     +N+I+  +LQ +  K  + 
Sbjct: 897 V-LLEMLWNFASMHQFFARFIRYTSTEQKEVHFVTV-----ENSIESNMLQLIIAKEKLN 950

Query: 192 D 192
           +
Sbjct: 951 N 951


>gi|158294994|ref|XP_315948.4| AGAP005917-PA [Anopheles gambiae str. PEST]
 gi|157015824|gb|EAA11913.5| AGAP005917-PA [Anopheles gambiae str. PEST]
          Length = 1566

 Score = 44.0 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  + + +  G    +       +  G++ ++ A  A              ++ +++  +
Sbjct: 1093 LNYVAEPYHAGMPASRRRTIQNAFMSGELRIVVATIAFGMGINK--ADIRAIIHYNMPKN 1150

Query: 141  LEEHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             E + Q + R G                     +   I  N+ID  V+++L  K 
Sbjct: 1151 FESYVQEVGRAGRDGLLSHCHLFLDGKGTDRNELRRFIYANSIDRHVIRKLLQKI 1205


>gi|153011948|ref|YP_001373160.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563836|gb|ABS17331.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1702

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 64   EKANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHP 116
                      AY +  D    L          +   K     + +     G++  L    
Sbjct: 1313 MNVEKTRGFSAYRWIRDELIRLGVPASEIAYMQDYKKTEAKQRLFGDVRAGRVRFLLGSS 1372

Query: 117  ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
             + G G+N Q     L    + W   + +Q   RI      Q      V ++    + ++
Sbjct: 1373 ETMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSL 1428

Query: 177  DELVLQRLRTKSTIQDLLLNA 197
            D  + Q    K+      L+ 
Sbjct: 1429 DASMWQNNERKARFIAAALSG 1449


>gi|325297578|ref|YP_004257495.1| helicase domain-containing protein [Bacteroides salanitronis DSM
            18170]
 gi|324317131|gb|ADY35022.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1657

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 1/110 (0%)

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +     +T         + N G++ +LF   +  G G+N Q     +    + W   + +
Sbjct: 1284 QFIQCAQTERARKKLFADMNSGRVRVLFGSTSMLGTGVNAQQRAVAVHHLEVPWRPADLE 1343

Query: 146  QMIERIGVTRQRQAG-FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
            Q   R               V +     + T+D      LR K    + +
Sbjct: 1344 QRNGRAVRKGNTVKLWGGNVVDIVIYGTEKTLDAYKFNLLRNKQMFINQI 1393


>gi|260940072|ref|XP_002614336.1| hypothetical protein CLUG_05822 [Clavispora lusitaniae ATCC 42720]
 gi|238852230|gb|EEQ41694.1| hypothetical protein CLUG_05822 [Clavispora lusitaniae ATCC 42720]
          Length = 1704

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 15/188 (7%)

Query: 2    KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            + Y +   E   D+Q   +     +   +   Q+    +   +      +  +    L +
Sbjct: 1446 QIYKQVDAETLQDIQRMKLSNSYGSKVDMIVKQVL--HLRGQDPNVQIVIFSQWRDLLVI 1503

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            +    + A I       S +A             KD   I+            +  +   
Sbjct: 1504 LASAFDKAKITYVSAKGSHVAASTSKLSDPVEAFKDQNNIK-------TCFLLNAQAQAS 1556

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GL L    +I +   L           E   + R  + G K+   V+    +NT++E ++
Sbjct: 1557 GLTLINATHIFLCEPLVNTPT------ELQAINRIHRIGQKKVTTVWMFAIENTVEENIV 1610

Query: 182  QRLRTKST 189
                 K  
Sbjct: 1611 ALGTRKRQ 1618


>gi|326955269|gb|AEA28964.1| helicase domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 2082

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
              +   + R   +     +    G++ +L       G G N+Q     L      W   +
Sbjct: 1639 RVRFIHEARNDREKAELFEACRNGEVAVLIGSTGKMGVGTNVQARAIALHHLDCPWRPAD 1698

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
              Q   R      RQ      + +Y  + + + D    Q +  K++    ++
Sbjct: 1699 LAQRDGR----ALRQGNAYAEIGIYRYVTEGSFDAYSWQTVARKASFIAQVM 1746


>gi|116194552|ref|XP_001223088.1| hypothetical protein CHGG_03874 [Chaetomium globosum CBS 148.51]
 gi|88179787|gb|EAQ87255.1| hypothetical protein CHGG_03874 [Chaetomium globosum CBS 148.51]
          Length = 143

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            +    G         N +      W+       +E   +    + G  RAV +   + +
Sbjct: 82  LNHMKHGSKRPALSAANYVHIVEPQWNPS-----VEEQAIAGAVRMGQTRAVTIIRYVVK 136

Query: 174 NTIDE 178
           N+++E
Sbjct: 137 NSVEE 141


>gi|225465878|ref|XP_002266009.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1397

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 9/179 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            ++  Y   +  +I+  +      +  Q    A+   +     +          +I  +  
Sbjct: 1181 RKSGYAMDEDSDIKDIDELVSLSE--QNNCNALLQQDYTRLNDETSHISPEKVLIFSQFL 1238

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                ++         +    +    + +K        ++     L     S   GL+L +
Sbjct: 1239 EHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLM-DGSAALGLDLSF 1297

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++ +   +W       + +E   ++R  + G  R + V  L  + TI+E +L+ L+ 
Sbjct: 1298 VTHVFLMEPIWD------RSMEEQVISRAHRMGATRPIRVETLAMRGTIEEQMLEFLQD 1350


>gi|163846418|ref|YP_001634462.1| helicase domain-containing protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524187|ref|YP_002568658.1| helicase domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667707|gb|ABY34073.1| helicase domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448066|gb|ACM52332.1| helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++    I      +  +L A       G+NL    N  + + L W+    +Q   R+   
Sbjct: 524 EERRAVIAAAPLDRPRVLVAT-DCISEGINLHERYNAAIHYDLPWNPNRLEQREGRVDRY 582

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q+       V V Y    N +D +V+  L  K+      L A
Sbjct: 583 GQQAPTV---VTVRYYGLNNEVDGVVIDVLLRKAREIRRALGA 622


>gi|44004463|ref|NP_982131.1| hypothetical protein BCE_A0124 [Bacillus cereus ATCC 10987]
 gi|42741529|gb|AAS44974.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 502

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 228 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 281

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 282 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 323


>gi|134291641|ref|YP_001115410.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134134830|gb|ABO59155.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 1155

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 36/117 (30%)

Query: 80   DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
            D     +        ++       +N    P +    +    G++L      ++   L W
Sbjct: 984  DDDFAVQTLYGAIKPNRRVVLCAAFNSPLAPDILICTSIGSEGIDLHKECAEVIHHDLPW 1043

Query: 140  DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            +  + +Q I R+           + V V     + + +      L  ++    +LL 
Sbjct: 1044 NPAKLEQRIGRVDRVGSLAETSGQWVRVGIPFQEQSYERFQYSVLLARAQRFQVLLG 1100


>gi|83768649|dbj|BAE58786.1| unnamed protein product [Aspergillus oryzae]
          Length = 889

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 51  VHDEKIKALEVIIEKA---NAAPIIVAYHFNSDL----------ARLQKAFPQGRTLDKD 97
               K++A+  ++      +    +V   F ++               + F  G T D+ 
Sbjct: 675 KGSPKMRAMLPVLRDQVIVHGEKAMVWTQFPAEQIYVAAILKEANIDAEVFHAGLTRDER 734

Query: 98  PCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
              ++ +     +  +L         G+NLQ     +   ++        + +    + R
Sbjct: 735 MNLVERFTQKHDECMVLICAYNVNAAGMNLQNLCRNVHILTMGLS-----KSVVNQAIGR 789

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             + G +R  FVY    +++ DE ++ R   K
Sbjct: 790 VSRLGQERMTFVYEYRLRSSFDEDLVSRSERK 821


>gi|325068189|ref|ZP_08126862.1| helicase domain protein [Actinomyces oris K20]
          Length = 798

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 16/119 (13%)

Query: 91  GRTLDKDPCTIQEWNEGKI----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             + D+       +N         +L A  A+   G++LQ   + LV F + ++    +Q
Sbjct: 307 STSADEREDIRARFNADPAEEDMRVLVATDAAG-EGIDLQTYCHRLVNFDVPFNPSRLEQ 365

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTID------ELVLQRLRTKSTIQDLLLNALK 199
            + RI      + G +    ++YL    + +      +  L RL  K   +   L A+ 
Sbjct: 366 RVGRID-----RYGQRETPTIFYLAPVASGEGLYAGHQDFLGRLAEKIATETRDLGAVN 419


>gi|57640956|ref|YP_183434.1| Hef nuclease [Thermococcus kodakarensis KOD1]
 gi|57159280|dbj|BAD85210.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus kodakarensis KOD1]
          Length = 804

 Score = 44.0 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 73/215 (33%), Gaps = 40/215 (18%)

Query: 9   RELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           R     L+ +     +    +  +  ++    +Y   +     +   K++ L+ ++++  
Sbjct: 299 RAYLKKLKEDKRTKSSKELMEDPRMRKV----IYLLVQAKESGLDHPKMEKLKELVKEQL 354

Query: 68  AAPI----IVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWN 105
                   IV  ++                     + +  +   +G +  +    +  ++
Sbjct: 355 GKKPSSKIIVFTNYRDTGKKIVEELRSMGITAERFIGQASRKDDRGMSQREQKEVLDRFS 414

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G+  +L A  +    GL++    +++VF+          Q   R G  R  +       
Sbjct: 415 RGEFNVLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRSIQRRGRTGRHRPGR------- 465

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            V  L+A+ T DE      R K      + +A+KK
Sbjct: 466 -VVILMAKGTRDEAYYWASRRKEK---GMFDAIKK 496


>gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 438

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 45/181 (24%), Gaps = 12/181 (6%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        K  Q        ++      +  ++      I
Sbjct: 207 AYEHLNDPEVVRIESEQITAD-------KVRQKLYHVSKDEKIPLLLGLIRQEEAMNRSI 259

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           I             +                  K    ++ + +G++  L A   +    
Sbjct: 260 IFVNTKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGELRFLVATDVAARGL 319

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT---IDEL 179
                  + ++ + L  D E++   I R             A   Y     +    I++ 
Sbjct: 320 HI--EDVSHVINYDLPQDPEDYVHRIGRTARAGASGDAISFACEEYVFSLPDIESFIEQR 377

Query: 180 V 180
           +
Sbjct: 378 I 378


>gi|302817901|ref|XP_002990625.1| hypothetical protein SELMODRAFT_450676 [Selaginella moellendorffii]
 gi|300141547|gb|EFJ08257.1| hypothetical protein SELMODRAFT_450676 [Selaginella moellendorffii]
          Length = 1228

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 26/165 (15%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS 79
           I A        K L       Y +++K    V + + K L  II+            +  
Sbjct: 575 IRASGKLELMHKML----SHFYLNKKKTLIIVQNTRSKQLMNIIDD-----------YLK 619

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                     +G        ++  +N  +     L     +     N     + +  +  
Sbjct: 620 QQFGSYGRIERGMDAQVRQASLTRFNSQDSSCFALLLERGAATSIPNQLTAVDAVFIYDS 679

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            W+        +    T   +      V VY L +  T++E +L 
Sbjct: 680 DWNP-----WSD----TTCIRKLGLNNVTVYRLYSGLTVEEKILD 715


>gi|315231610|ref|YP_004072046.1| DNA/RNA helicase [Thermococcus barophilus MP]
 gi|315184638|gb|ADT84823.1| DNA/RNA helicase [Thermococcus barophilus MP]
          Length = 952

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 22/192 (11%)

Query: 5   HKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++     +L  +  E  +      K ++      Y+ +      +  E +  LE + 
Sbjct: 367 RQIEKLRGILELARKAQEKDSKIKNVAKLVK------YHLDRGEKIVIFTEYLDTLEYLK 420

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
                   I      +           G+         + + +     +       G GL
Sbjct: 421 NNLPKYLGINETDIVTI---------SGKNKGDVHNIKERFEQENGAKILIATDVAGEGL 471

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NLQ   N+L+ +   W   + +Q + RI      + G K+  +VY +   N +D  VL+ 
Sbjct: 472 NLQ-VANVLINYEAPWSPIKLEQRMGRIW-----RLGQKKESYVYTVFLSNKMDRDVLEN 525

Query: 184 LRTKSTIQDLLL 195
           L  K    D  +
Sbjct: 526 LYHKLMNIDKAM 537


>gi|146422514|ref|XP_001487194.1| hypothetical protein PGUG_00571 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1263

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 112  LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L        HGLN+      + F S         + +E   + R  + G  +AV V  LI
Sbjct: 1058 LIMDINLAAHGLNITA-ATHVYFTSP-----VWLRSVEAQAIKRAHRIGQTKAVRVETLI 1111

Query: 172  AQNTIDELVLQRLRT 186
             +NT++E + ++   
Sbjct: 1112 LKNTLEEEIYRKRSQ 1126


>gi|327409762|ref|YP_004347182.1| D6/D11-like helicase [Lausannevirus]
 gi|326784936|gb|AEA07070.1| D6/D11-like helicase [Lausannevirus]
          Length = 804

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK------IPLLFAHPASCGHGLNLQYGGNI 131
             D       F    T ++    ++ +N  K      I ++    +       L      
Sbjct: 406 TKDKKPKYALFTGSETKEERERVVRAFNRPKNVDGSVIQVMIGSKSIAEGVSLL--RVRQ 463

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVFVYYLIAQNT-----IDELVL-QR 183
           +     +++     Q I R      ++     +R V V+   A+       +D+ +  + 
Sbjct: 464 VHIIDPFFNSSTIDQAIGRAVRFCSQKDLPEGERDVEVWLYRARGEHGRKLVDDKIYDEI 523

Query: 184 LRTKSTIQDLLLNALKK 200
           +  K  + +  L ALK+
Sbjct: 524 VEPKKVVAEGFLQALKE 540


>gi|322497195|emb|CBZ32268.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 958

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +  D  +          + +    +  ++ G+  +      +C  G++L       VF 
Sbjct: 480 QWARDHCKRAVRIDGRVPVQQRGDLLHAFHRGEARIAVIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D         R    R  + G +  V VYYL+
Sbjct: 539 ELPPDAA-----WMRQAEDRLHRPGQRDEVVVYYLL 569


>gi|241765453|ref|ZP_04763421.1| helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241364792|gb|EER59776.1| helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 384

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
            R                  +   EG + LL     +   GLNLQ  G ++    L W+ 
Sbjct: 209 NRSGFWRDGRFQRCDRNVLKKRVREGDLKLLLGT-DAASEGLNLQRLGTLINI-DLPWNP 266

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +Q   RI    Q ++     +++  L  ++++++ V Q L  +      L  
Sbjct: 267 TRLEQRKGRIQRIGQARS----EIWIANLRYRDSVEDRVHQVLADRLEAIHGLFG 317


>gi|146079608|ref|XP_001463808.1| SNF2/RAD54 related DNA helicase [Leishmania infantum JPCM5]
 gi|134067896|emb|CAM66177.1| putative SNF2/RAD54 related DNA helicase [Leishmania infantum
           JPCM5]
          Length = 958

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +  D  +          + +    +  ++ G+  +      +C  G++L       VF 
Sbjct: 480 QWARDHCKRAVRIDGRVPVQQRGDLLHAFHRGEARIAVIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D         R    R  + G +  V VYYL+
Sbjct: 539 ELPPDAA-----WMRQAEDRLHRPGQRDEVVVYYLL 569


>gi|87301587|ref|ZP_01084427.1| possible helicase [Synechococcus sp. WH 5701]
 gi|87283804|gb|EAQ75758.1| possible helicase [Synechococcus sp. WH 5701]
          Length = 538

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 25/198 (12%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + +       +GE      S +      Q+              +V   +    ++++ 
Sbjct: 340 QRVENYRLRAARGEVRRDAESLAMLTALRQI----------GAAYKVPAAQALVTQLLV- 388

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHPASC 119
               A ++V   F +   RL  +        +         ++ +  G++PLL A  A  
Sbjct: 389 --GGAAVVVFTAFVAPAERLAASLGGAVLTGRLKPPERQRQVERFQAGRVPLLVATFAVA 446

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
           G G  L    + +V     W   + +         R  + G    +  ++L      D+L
Sbjct: 447 GLGFTLHR-ASHVVLLERPWTPGDTE-----QAEDRAHRIGMAGPLTAHWLQL-GVADQL 499

Query: 180 VLQRLRTKSTIQDLLLNA 197
           V   + +K+    L L  
Sbjct: 500 VDGLIASKAERIALALGG 517


>gi|134111228|ref|XP_775756.1| hypothetical protein CNBD4850 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258420|gb|EAL21109.1| hypothetical protein CNBD4850 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1656

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 18/184 (9%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQL----ANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            E   D   E  E    A+   +   +        +  D    +    +  IK L      
Sbjct: 1428 EAEEDTTPEEQEQLRRAADLERLRMMDVERRRAVMMMDMMGEYGSKINFLIKHLLYYKST 1487

Query: 66   ANAAPIIVAYHF-------NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
                  ++  ++          L     +F       K    + ++  +  I +   H  
Sbjct: 1488 EPDTRHVIFSNWSDSLNIVMQALRLNGISFASFDQGKKQKDVVDQFLRDESISVFLLHAE 1547

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                GL L    +++            +   E   + R  + G ++   V+     +T++
Sbjct: 1548 RESSGLTLTS-CHVVHLLEP-----VLRHSFELQAIGRVDRLGQEKETSVFCYATMDTVE 1601

Query: 178  ELVL 181
              +L
Sbjct: 1602 SRIL 1605


>gi|153817056|ref|ZP_01969723.1| helicase conserved C- domain protein [Vibrio cholerae NCTC 8457]
 gi|126512466|gb|EAZ75060.1| helicase conserved C- domain protein [Vibrio cholerae NCTC 8457]
          Length = 4732

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2979 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 3038

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 3039 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 3093


>gi|261212877|ref|ZP_05927161.1| DNA methylase [Vibrio sp. RC341]
 gi|260837942|gb|EEX64619.1| DNA methylase [Vibrio sp. RC341]
          Length = 4620

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2871 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2930

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2931 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2985


>gi|152973179|ref|YP_001338325.1| putative ATP-dependent helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958028|gb|ABR80058.1| putative ATP-dependent helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 1046

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 52/226 (23%)

Query: 14  DLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEKHWKEVHDEK--IKALEVIIEKA 66
           +++    EA   A+      T +  Q+ +    + +    +     +  +  +   ++  
Sbjct: 457 EIENAQSEAVEEATHYTQPLTNEQKQILDVLRQWAQVAKNQVDSKARAILDWINTNLKTN 516

Query: 67  NAAPIIVAYHFNSDLARLQKAF----------------PQGRTLDKDPCTIQEWN----E 106
           N         F       Q                         ++       +      
Sbjct: 517 NQWNEYRVILFTEYRTTHQWMHEILASHGLAGERLAVLHGSMPQEEREKVKAAFQTSPKA 576

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
             + +L A   +   G++LQ   N L+   + ++    +Q   RI    QRQ    + V 
Sbjct: 577 SAVRILLAT-DAASEGIDLQNYCNYLIHLEIPYNPNVMEQRNGRIDRHGQRQ----KEVV 631

Query: 167 VYYLIAQNTID----------ELVLQRLRTKSTIQDLLLNALKKET 202
           +++ +  + +D          + +L+ LR         L +++ + 
Sbjct: 632 IWHPV--DGVDKVNTRIGGHGDDILRALRK--------LESMRADM 667


>gi|153216704|ref|ZP_01950579.1| helicase conserved C- domain protein [Vibrio cholerae 1587]
 gi|124114154|gb|EAY32974.1| helicase conserved C- domain protein [Vibrio cholerae 1587]
          Length = 4231

 Score = 44.0 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2979 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 3038

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 3039 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 3093


>gi|330947467|gb|EGH48088.1| SNF2-related:helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 133

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 91  GRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +  K    I     +    +     ++ G G NL    N + F  L W          
Sbjct: 54  SDSPKKRQKAIDAFQQDQDCRIFIGTRSAAGTGYNLTA-ANYVFFLGLPWTPGLQD---- 108

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNT 175
                R  + G  R V V   +A +T
Sbjct: 109 -QAEDRAYRNGQLRMVVVKIPLADDT 133


>gi|153800504|ref|ZP_01955090.1| helicase conserved C- domain protein [Vibrio cholerae MZO-3]
 gi|124123948|gb|EAY42691.1| helicase conserved C- domain protein [Vibrio cholerae MZO-3]
          Length = 4610

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2857 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2916

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2917 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2971


>gi|67920660|ref|ZP_00514180.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858144|gb|EAM53383.1| SNF2-related:Helicase, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 959

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I+E+ + K  L L         G+NL +  + L+ F + W L   QQ   RI    Q 
Sbjct: 496 EVIEEFGDEKSKLRLLIATDVASEGINLHFLCHRLIHFDIPWSLMALQQRNGRIDRYGQE 555

Query: 158 QAGFKRAVFVYYLIAQNT---IDE--LVLQRLRTKSTIQ 191
           Q        + YL+ +     +DE   +++ L  K    
Sbjct: 556 QQPQ-----IRYLLTRCQNAQMDEAERIIRVLIKKDEQA 589


>gi|328708028|ref|XP_003243578.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 706

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
              N   I  +  +     + L L      + F     D     Q+++ I      ++  
Sbjct: 602 NFQNSENITTILINYNIGLNNLKL-NFATRVFFMEPIMDKSFENQIVDNI------RSKQ 654

Query: 162 KRAVFVYYLIAQNTIDELV 180
            +  +V++ I +++I+E +
Sbjct: 655 TKPTYVHHFIIKDSIEEKI 673


>gi|50311213|ref|XP_455630.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644766|emb|CAG98338.1| KLLA0F12166p [Kluyveromyces lactis]
          Length = 1528

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                    +     L  +  S   GL L    ++++   +           E   ++R  
Sbjct: 1389 KAVDTFRKDPNCTCLLLNVHSQSTGLTLVNARHLILLEPIMDSST------EAQAISRIH 1442

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQ 182
            + G K   +V+  + +NT++E +++
Sbjct: 1443 RIGQKDVTYVWNFMVRNTVEESIMK 1467


>gi|260789510|ref|XP_002589789.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
 gi|229274972|gb|EEN45800.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
          Length = 987

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDP 98
           +   K + L+ ++ +       +++       L  ++    + +           + +  
Sbjct: 855 LDSGKFRLLDRLLPEMAERGDRVLLFSQLTMMLDIVEPYLKRRKYKYVRLDGQTPVTERL 914

Query: 99  CTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
             I ++N    I +      + G G+NL    N ++   + ++    +Q  +R     Q 
Sbjct: 915 QLIDQYNNNTDIFIFLLSTRAGGLGINLTS-ANTVILHDIDFNPYNDKQAEDRCHRVGQT 973

Query: 158 QAGFKRAVFVYYLI 171
           +    +       +
Sbjct: 974 KYDGCKIALYTVFL 987


>gi|296157098|ref|ZP_06839934.1| DEAD-like helicase [Burkholderia sp. Ch1-1]
 gi|295892434|gb|EFG72216.1| DEAD-like helicase [Burkholderia sp. Ch1-1]
          Length = 761

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 639 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 692

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    T     L  +  K  +       + +  + V
Sbjct: 693 SWRIGQKQPVKVIYLGYAATSQMTCLTLMAKKIMVSQSTSGDVPESGLDV 742


>gi|111219743|ref|YP_710537.1| hypothetical protein FRAAL0248 [Frankia alni ACN14a]
 gi|111147275|emb|CAJ58925.1| conserved hypothetical protein; putative ATP dependent helicase
           domain [Frankia alni ACN14a]
          Length = 1159

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 93  TLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             D+       +        + +L A   +   G++LQ   + LV + + ++  + +Q I
Sbjct: 643 PTDEREQLRLAFQADPSEHPVRILLAT-DAASEGIDLQNHCHRLVNYDIPFNPNKLEQRI 701

Query: 149 ERIGVTRQRQAGFKRAVFVYYLI------AQNTIDELV--LQRLRTKSTIQDLLLNALKK 200
            RI    QRQ+       + + +      A ++ +  +  L R+  K       L ++  
Sbjct: 702 GRIDRYGQRQSP-----EIRHFVGSGWTGAVDSYEADLEFLSRVVKKVAQMKADLGSVNA 756


>gi|58266262|ref|XP_570287.1| hypothetical protein CND01470 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226520|gb|AAW42980.1| hypothetical protein CND01470 [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1586

 Score = 43.6 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 50/184 (27%), Gaps = 18/184 (9%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--- 66
            E   D   E  E    A+   +   +                +  KI  L   +      
Sbjct: 1358 EAEEDTTPEEQEQLRRAADLERLRMMDVERRRAVMMMDMMGEYGSKINFLIKHLLYYKST 1417

Query: 67   -NAAPIIVAYHF-------NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
                  ++  ++          L     +F       K    + ++  +  I +   H  
Sbjct: 1418 EPDTRHVIFSNWSDSLNIVMQALRLNGISFASFDQGKKQKDVVDQFLRDESISVFLLHAE 1477

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                GL L    +++            +   E   + R  + G ++   V+     +T++
Sbjct: 1478 RESSGLTLTS-CHVVHLLEP-----VLRHSFELQAIGRVDRLGQEKETSVFCYATMDTVE 1531

Query: 178  ELVL 181
              +L
Sbjct: 1532 SRIL 1535


>gi|262402926|ref|ZP_06079486.1| DNA methylase [Vibrio sp. RC586]
 gi|262350425|gb|EEY99558.1| DNA methylase [Vibrio sp. RC586]
          Length = 4236

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2483 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2542

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2543 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2597


>gi|255577062|ref|XP_002529415.1| mom(plant), putative [Ricinus communis]
 gi|223531092|gb|EEF32941.1| mom(plant), putative [Ricinus communis]
          Length = 1982

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 50/202 (24%), Gaps = 47/202 (23%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR--------- 83
            +  +     D         D K+  +  I  KA+    ++         R         
Sbjct: 459 RKCCDHPYLMDPSPEDILTKDAKVVDILDIGIKASGKLQLLQAMLIEIRNRGSRVIVLFQ 518

Query: 84  ----------------------------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                                         +         +    +  +N  K   +F  
Sbjct: 519 VYALHRNSWKDKIGDILDDFVRQRFGQDSYERIDGCVNQKRKQAALNNFNNQKTRFVFLL 578

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            +            + ++ F   W      + + +I +           + V+ L +  T
Sbjct: 579 ESCACLPSIKLSSVDTVIIFGSDWIPANDLRNLRKITLD-----SQFEQLKVFRLYSSFT 633

Query: 176 IDELVLQRLRTKSTIQDLLLNA 197
           ++E VL   +      D +L++
Sbjct: 634 VEENVLILAKH-----DKILDS 650


>gi|229526604|ref|ZP_04416008.1| helicase Snf2 family [Vibrio cholerae bv. albensis VL426]
 gi|229336762|gb|EEO01780.1| helicase Snf2 family [Vibrio cholerae bv. albensis VL426]
          Length = 1032

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 T  K          G++ +L       G G N+Q     L      W   + +Q
Sbjct: 863 FIHDYNTTLKKEALFDRVRRGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 922

Query: 147 MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
              RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 923 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 977


>gi|221064761|ref|ZP_03540866.1| DEAD-like helicase [Comamonas testosteroni KF-1]
 gi|220709784|gb|EED65152.1| DEAD-like helicase [Comamonas testosteroni KF-1]
          Length = 759

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K +V V YL    +     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLSVRVMYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|256271747|gb|EEU06784.1| Irc20p [Saccharomyces cerevisiae JAY291]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|118576367|ref|YP_876110.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
 gi|118194888|gb|ABK77806.1| ERCC4-like helicase [Cenarchaeum symbiosum A]
          Length = 558

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K   T+ ++ +G   +L         GL++    N++VF+        + Q   R
Sbjct: 438 GLKQKKQVETVAKFRDGGYDVLV-STRVGEEGLDI-SEVNLVVFYDNVPSSIRYVQRRGR 495

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G     +           L+A+ TIDE      R K T    + + + K
Sbjct: 496 TGRKDAGKL--------VVLMAKGTIDEAYYWIGRRKITAARGMGDRMNK 537


>gi|222109151|ref|YP_002551416.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738425|gb|ACM39290.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1701

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 16/193 (8%)

Query: 17   GENIEAFNSASKTV----KCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPI 71
              + E  N  +  V    +  Q  +   Y   +    E+          +       +  
Sbjct: 1259 DNDNEPDNKLNLLVENAFRLWQDTSQNTYLKPDGKPYELPGAAQMIFSDLGTINVEKSRG 1318

Query: 72   IVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHGLN 124
              AY +  D    +          +   K     + +     GK+  L     + G G+N
Sbjct: 1319 FSAYRWIRDELIRMGVPPAEIAYMQDYKKTEAKQRLFGDVRAGKVRFLIGSSETMGTGVN 1378

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
             Q     L    + W   + +Q   RI      Q      V ++    Q ++D  + Q  
Sbjct: 1379 AQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATQGSLDASMWQNN 1434

Query: 185  RTKSTIQDLLLNA 197
              K+      L+ 
Sbjct: 1435 ERKARFIAAALSG 1447


>gi|326427519|gb|EGD73089.1| hypothetical protein PTSG_04803 [Salpingoeca sp. ATCC 50818]
          Length = 1649

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 22/144 (15%)

Query: 49   KEVHDEKIKALEVIIEKA------NAAPIIVAYHFNSDLARLQK---------AFPQGRT 93
            +  H  K+  +   + +       +   +++   F+  L  ++                T
Sbjct: 1473 EGGHSSKVCEVLRALRRVFSKPTGHWNKVVIFSQFSDMLRLIRIGARENDIRVFEAYEST 1532

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
              K     +     +   L     S   GLN+      +            Q       V
Sbjct: 1533 QFKR-ALDEFKKATEHCALLLDIKSGSQGLNILE-AQHVFLLEPILHPGVEQ-----QAV 1585

Query: 154  TRQRQAGFKRAVFVYYLIAQNTID 177
             R  + G K    V++ I  ++I+
Sbjct: 1586 ARVHRIGQKHPTCVHHFIVTDSIE 1609


>gi|190405309|gb|EDV08576.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|147863931|emb|CAN81112.1| hypothetical protein VITISV_032626 [Vitis vinifera]
          Length = 1208

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 9/179 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            ++  Y   +  +I+  +      +  Q    A+   +     +          +I  +  
Sbjct: 992  RKSGYAMDEDSDIKDIDELVSLSE--QNNCNALLQQDYTRLNDETSHISPEKVLIFSQFL 1049

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                ++         +    +    + +K        ++     L     S   GL+L +
Sbjct: 1050 EHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLM-DGSAALGLDLSF 1108

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++ +   +W       + +E   ++R  + G  R + V  L  + TI+E +L+ L+ 
Sbjct: 1109 VTHVFLMEPIWD------RSMEEQVISRAHRMGATRPIRVETLAMRGTIEEQMLEFLQD 1161


>gi|6323276|ref|NP_013348.1| Irc20p [Saccharomyces cerevisiae S288c]
 gi|74676414|sp|Q06554|IRC20_YEAST RecName: Full=Uncharacterized ATP-dependent helicase IRC20; AltName:
            Full=Increased recombination centers protein 20
 gi|662344|gb|AAB67400.1| Ylr247cp [Saccharomyces cerevisiae]
 gi|285813665|tpg|DAA09561.1| TPA: Irc20p [Saccharomyces cerevisiae S288c]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|83646526|ref|YP_434961.1| SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83634569|gb|ABC30536.1| Superfamily II DNA/RNA helicase, SNF2 family [Hahella chejuensis
           KCTC 2396]
          Length = 947

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 17/171 (9%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDL------------ARLQ 85
              +  KH K  +D K++ L+ II+         ++   + +               R  
Sbjct: 450 RLIERAKHLKSGNDPKLQTLKQIIKPVLDEGYNPVIFCRYIATAEYLADELNSAFPQREV 509

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                  T  +    I++  E     L         G+NLQ   N ++ + L W+   H+
Sbjct: 510 IHVTGDLTPTERLERIEQLKESDKAPLLVATDCLSEGVNLQEQFNAVIHYDLSWNPTRHE 569

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           Q   R+    Q+    K    + Y   +N +D  VLQ +  K+      L 
Sbjct: 570 QREGRVDRFGQKAKNVK---ALMYYGEENPVDGAVLQVILRKAESIRKALG 617


>gi|255025985|ref|ZP_05297971.1| hypothetical protein LmonocytFSL_05850 [Listeria monocytogenes FSL
           J2-003]
          Length = 907

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            K Q +L         E     +   +  Q+      + E    +     K+  L   I+
Sbjct: 828 EKIQADLEASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGE---SGKLLQLFDTIQ 884

Query: 65  --KANAAPIIVAYHFNSDLARLQ 85
             + N   I++   F   L  ++
Sbjct: 885 TARENGKRILLFSQFTGMLGIIR 907


>gi|151941083|gb|EDN59463.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|312115548|ref|YP_004013144.1| DEAD-like helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220677|gb|ADP72045.1| DEAD-like helicase [Rhodomicrobium vannielii ATCC 17100]
          Length = 1713

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +     K         E ++ +L    A  G G N+Q     +      W   + +Q
Sbjct: 1298 FIHEADNDIKKARLFAAVREAQVRILIGSTAKMGVGTNVQRQLVAMHHLDAPWRPADVEQ 1357

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               RI      Q      V +   +   ++D    Q L  K+     L
Sbjct: 1358 RDGRILR----QGNLNSEVEIIRYVTLRSLDAYRWQTLTRKANFIAQL 1401


>gi|259148229|emb|CAY81476.1| Irc20p [Saccharomyces cerevisiae EC1118]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|207342903|gb|EDZ70527.1| YLR247Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1556

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
            L  ++       T +          +  +  L  +  + G GLNL      +       +
Sbjct: 1401 LYHIEHLACLSNTANVGETINNFKRQPSVTCLLLNVKTLGAGLNL-INAKHIFLLDPILN 1459

Query: 141  LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              +         + R  + G     FV+  + +NT++E +L+
Sbjct: 1460 NSDEL-----QAMGRNNRIGQDEETFVWNFMIRNTVEENILR 1496


>gi|254442024|ref|ZP_05055500.1| Helicase conserved C-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256332|gb|EDY80640.1| Helicase conserved C-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 959

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 25/177 (14%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF---------- 77
           +  K  Q           ++  ++    +   + +    N    +V   +          
Sbjct: 444 ELRKLRQFERELTDLQGVENDYKLEAAHMVITDWL---ENGYSPVVFCRYIPTANYVGEQ 500

Query: 78  ------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                  +      +        +     I+     K  +L A       G+NL    + 
Sbjct: 501 LKPILEKAFKDITVQVVTSEDPDELRRERIEAMGSSKRRVLIAT-DCLSEGINLHAHFSA 559

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTK 187
           ++ + L W+    +Q   R+    Q +      V  Y L +++  +D +VL  +  K
Sbjct: 560 VLHYDLPWNPNRLEQREGRVDRFGQTR----DEVKAYLLFSKDNPVDGVVLNVILRK 612


>gi|297849100|ref|XP_002892431.1| hypothetical protein ARALYDRAFT_470861 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338273|gb|EFH68690.1| hypothetical protein ARALYDRAFT_470861 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 2034

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 30/193 (15%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYH------------- 76
             QL    +   +    +     K++ L+ ++     N    +V Y              
Sbjct: 563 LKQLLTKNLELHKILDVEVKASGKLQLLDEMLTHIKKNGLKAVVFYQAAQTPEGLLLGNI 622

Query: 77  ---FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 133
              F       +     G    K         E +  +L     +C   + L     + +
Sbjct: 623 LEDFVGHRFGPKSYEH-GIYSSKKNAINNFNKESQCCVLLLETRACSQTIKLLR-AEVFI 680

Query: 134 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL--VLQRLRTKSTIQ 191
            F    +     + +E+I +    +        ++ L +  T++E   +L R   +    
Sbjct: 681 LFGSSLNPSHDVKHLEKIKIESCSER-----TKIFRLYSVCTVEEKALILARQNKR---H 732

Query: 192 DLLLNALKKETIH 204
              +  L +   H
Sbjct: 733 HKAVENLSRSLTH 745


>gi|91784931|ref|YP_560137.1| hypothetical protein Bxe_A0849 [Burkholderia xenovorans LB400]
 gi|91688885|gb|ABE32085.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 1062

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 40/158 (25%), Gaps = 7/158 (4%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
                E    L   N  A ++A       Q     +     +               I +
Sbjct: 795 QALLDEYAHILFESNGLADHAA-------QDGCETLADAMYEAMSLRSAPLQPDELQIRD 847

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +  +              R      +   + +       +N    P + A  +    GL+
Sbjct: 848 EQLSIKPFETRVRTHFALRFGNQRGEDGAVARRKVVQAAFNSPFWPFVLASTSVGQEGLD 907

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                + +V ++L  +  + +Q   R+   +       
Sbjct: 908 FHNWCHSVVHWNLPSNPVDMEQREGRVHRYKGYAVRKN 945


>gi|319892532|ref|YP_004149407.1| hypothetical protein SPSINT_1243 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162228|gb|ADV05771.1| hypothetical protein SPSINT_1243 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 383

 Score = 43.6 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 18/190 (9%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
            E  E +N   +     ++ +G +  +   + + +     K  + I        I+   +
Sbjct: 201 DETSEKYNVLKE-EFLQKIKDGELLLNTLVNMQYLMFTDEKRCKEIAASLKGQQIVYCCY 259

Query: 77  FNSDLARLQKAFPQGRT--LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                   +       T   D     ++ +     P L         G NLQ+  N + F
Sbjct: 260 LKEVEQISKHCDCYVITGDTDNRSEVLKRFKGDDKP-LIMTYGVGSFGHNLQF-CNRITF 317

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF----VYYLIAQNTIDELVLQRLRTKSTI 190
            S+ +D  + +Q + RI    Q +    R +     +Y L         +   L  KS +
Sbjct: 318 ASITFDYAKVEQAMYRIKRLGQERIIHYRYIRSDLGIYNL---------MYDNLTKKSNL 368

Query: 191 QDLLLNALKK 200
            DL++  L+K
Sbjct: 369 HDLIIRDLEK 378


>gi|329765288|ref|ZP_08256868.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138194|gb|EGG42450.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 505

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA---------------R 83
           A++  ++   K +   KI  L+ IIE       ++   +   +                 
Sbjct: 321 AIHLAKDAQSKGIEHSKILKLKEIIESVPG-KALIFTSYRDSVDVIFNKLTEMGISAAIL 379

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
           + K+   G    K   T+Q + +G   +L A       GL++    N ++F+        
Sbjct: 380 IGKSGDTGLKQKKQIETVQNFRDGLFRVLVAT-RVGEEGLDI-SEVNQVIFYDNVPSSIR 437

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             Q        R+ + G K    +  LIA+NTIDE      + K T    +   + K
Sbjct: 438 FVQ--------RRGRTGRKDTGKLVVLIAKNTIDETYYWIGKRKMTAAKSMGEKMTK 486


>gi|3599385|gb|AAC62691.1| ATP-dependent RNA helicase [Cenarchaeum symbiosum]
          Length = 503

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    K   T+ ++ +G   +L         GL++    N++VF+        + Q   R
Sbjct: 383 GLKQKKQVETVAKFRDGGYDVLV-STRVGEEGLDI-SEVNLVVFYDNVPSSIRYVQRRGR 440

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G     +           L+A+ TIDE      R K T    + + + K
Sbjct: 441 TGRKDAGKL--------VVLMAKGTIDEAYYWIGRRKITAARGMGDRMNK 482


>gi|296090335|emb|CBI40154.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 9/179 (5%)

Query: 8    QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
            ++  Y   +  +I+  +      +  Q    A+   +     +          +I  +  
Sbjct: 939  RKSGYAMDEDSDIKDIDELVSLSE--QNNCNALLQQDYTRLNDETSHISPEKVLIFSQFL 996

Query: 68   AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                ++         +    +    + +K        ++     L     S   GL+L +
Sbjct: 997  EHIHVIEQQLTVAGIKFSGMYSPMHSSNKMKSLSTFQHDADCMALLM-DGSAALGLDLSF 1055

Query: 128  GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              ++ +   +W       + +E   ++R  + G  R + V  L  + TI+E +L+ L+ 
Sbjct: 1056 VTHVFLMEPIWD------RSMEEQVISRAHRMGATRPIRVETLAMRGTIEEQMLEFLQD 1108


>gi|254500027|ref|ZP_05112180.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222441494|gb|EEE48171.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 1702

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 26/198 (13%)

Query: 17   GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD----------EKIKALEVIIEKA 66
            GE  E  N  +K      + N    + E      +             ++   ++     
Sbjct: 1262 GEENEPDNKLNKL-----IENSFRIWKETGDNTYLTREGKTFDLPGAAQMIFSDLGTINV 1316

Query: 67   NAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    +          +   K     + +   N GK+  L     + 
Sbjct: 1317 EKTRGFSAYRWIRDELIRRGVPASEIAFMQDYKKTEAKQRLFADVNAGKVRFLIGSSETM 1376

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI      Q      + ++    + ++D  
Sbjct: 1377 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIER----QGNQHDEIDIFAYATEGSMDAQ 1432

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1433 MWQNNERKARFIAAALSG 1450


>gi|10954739|ref|NP_066674.1| hypothetical protein pRi1724_p094 [Agrobacterium rhizogenes]
 gi|10567403|dbj|BAB16212.1| riorf93 [Agrobacterium rhizogenes]
          Length = 1693

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    L          +   K     + +     G++  L     + 
Sbjct: 1307 EKTRGFSAYRWIRDELVRLGVPPSQIAFMQDYKKTEAKQRLFADVRAGRVRFLIGSSETM 1366

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W     +Q   RI      Q     AV ++    + ++D  
Sbjct: 1367 GTGVNAQARLKALHHLDVPWLPSHIEQREGRIVR----QGNQHDAVDIFAYATEGSLDAS 1422

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1423 MWQNNERKARFIAAALSG 1440


>gi|262191610|ref|ZP_06049789.1| DNA methylase [Vibrio cholerae CT 5369-93]
 gi|262032498|gb|EEY51057.1| DNA methylase [Vibrio cholerae CT 5369-93]
          Length = 4238

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 8/115 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +     ++   G++ +L       G G N+Q     L      W   + +Q
Sbjct: 2485 FIHDANTTKQKEALFEQVRNGEVRVLIGSSMKMGAGTNVQNRLVALHHMDAPWRPSDMEQ 2544

Query: 147  MIERIGVTRQ--------RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
               RI                     V +     Q + D ++ Q L  K+   + 
Sbjct: 2545 REGRIVRQGNEFYQRAANAGKPEDFEVELIAYTTQGSSDPVMWQILERKAGAIEQ 2599


>gi|262118169|ref|YP_003275939.1| helicase domain protein [Gordonia bronchialis DSM 43247]
 gi|262088079|gb|ACY24046.1| helicase domain protein [Gordonia bronchialis DSM 43247]
          Length = 1956

 Score = 43.6 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               + R+  +     ++   GKI +L     + G G+N+Q     L    + W   + +Q
Sbjct: 1436 FIHEARSPQQKLALQEDARTGKIAVLIGSTKTMGTGMNVQDRMIALHHMDVPWRPADLEQ 1495

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               RI      Q      + +   + + T D ++ Q++  K
Sbjct: 1496 REGRIIR----QGNQNPRIEICGYVTEGTTDTVMWQKVERK 1532


>gi|316932252|ref|YP_004107234.1| helicase domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315599966|gb|ADU42501.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
          Length = 921

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 93  TLDKDPCTIQEW----NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
           T D+    + +      E  +  +         G+NLQ   + +V + L W+   HQQ  
Sbjct: 496 TPDERRDRVADMAPADEEKPVQRILVATDCLSEGINLQQLFDTVVHYDLSWNPTRHQQRE 555

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
            R+    Q        V    + + ++ ID  VL  +  K+ 
Sbjct: 556 GRVDRFGQPAEL----VRSIMMFSPDSAIDGAVLDVILRKAE 593


>gi|156847230|ref|XP_001646500.1| hypothetical protein Kpol_1048p73 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117177|gb|EDO18642.1| hypothetical protein Kpol_1048p73 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1549

 Score = 43.6 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
              +   +     L  +  + G GLNL      +       +  +          +R  + 
Sbjct: 1416 IEKFKEDYSYTCLLLNVKTLGAGLNLLN-ARHIFLLDPIINNNDEL-----QAKSRNNRI 1469

Query: 160  GFKRAVFVYYLIAQNTIDELVLQ---RLRTKST 189
            G  +  FV+  + +N+++E +++    L  K  
Sbjct: 1470 GQTKTTFVWNFMIRNSVEENIMRYKCMLDGKRK 1502


>gi|254565729|ref|XP_002489975.1| hypothetical protein [Pichia pastoris GS115]
 gi|238029771|emb|CAY67694.1| Hypothetical protein PAS_chr1-1_0318 [Pichia pastoris GS115]
 gi|328350386|emb|CCA36786.1| hypothetical protein PP7435_Chr1-0638 [Pichia pastoris CBS 7435]
          Length = 1169

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 84   LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                    + +++    ++         L        HG  L       V+F    +   
Sbjct: 945  YFMYASYKKPIERAENLVKFTEIESGAALIMDLKLASHG--LTIIAATRVYF---INP-V 998

Query: 144  HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
             ++ +E   + R  + G ++ V V  LI + TI+E +LQ
Sbjct: 999  WRRDLEAQAIKRAHRIGQQKEVKVETLILRGTIEEEMLQ 1037


>gi|86753176|gb|ABD14718.1| pXO1-8-like hypothetical protein [Bacillus cereus]
          Length = 995

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 824 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 877

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 878 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|187940163|gb|ACD39293.1| SNF2 family-related helicase [Pseudomonas aeruginosa]
          Length = 927

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    + +  + +  +L A       G+NLQ+    +V + L W+   H+Q   R+ 
Sbjct: 512 TPEERRERVDDMEDAEQRILVAT-DCLSEGINLQHLFTAVVHYDLAWNPTRHEQREGRVD 570

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTK 187
              Q        V    L  Q+  +D  VL  +  K
Sbjct: 571 RFGQH----AEEVRCTMLYGQDNPVDGFVLNVILKK 602


>gi|308808864|ref|XP_003081742.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
 gi|116060208|emb|CAL56267.1| Vacuolar H+-ATPase V1 sector, subunit A (ISS) [Ostreococcus tauri]
          Length = 1791

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 18/124 (14%)

Query: 91  GRTLDKDPCTIQEWNEG---------KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               D+    + ++ EG          + +      + G GL+     + +VF  L  D 
Sbjct: 585 STPSDERKVLVDKFREGAAVGADGVVSVRIALLSVKAAGTGLDF-STASCVVFAELPDDA 643

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---TIDELVLQRLRTKSTIQDLLLNAL 198
              +         R  + G    V VY+L A+    + DE   QRL ++  +    ++  
Sbjct: 644 SLLE-----QAEARVHRRGNDSGVNVYFLCARGGACSHDEDRWQRLESQLDVCKEAIDGD 698

Query: 199 KKET 202
               
Sbjct: 699 DARV 702


>gi|317145448|ref|XP_001820788.2| hypothetical protein AOR_1_372144 [Aspergillus oryzae RIB40]
          Length = 583

 Score = 43.2 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           +     + F  G T D+    ++ +     +  +L         G+NLQ     +   ++
Sbjct: 411 EANIDAEVFHAGLTRDERMNLVERFTQKHDECMVLICAYNVNAAGMNLQNLCRNVHILTM 470

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                   + +    + R  + G +R  FVY    +++ DE ++ R   K
Sbjct: 471 GLS-----KSVVNQAIGRVSRLGQERMTFVYEYRLRSSFDEDLVSRSERK 515


>gi|320584136|gb|EFW98347.1| DNA-dependent ATPase of the nucleotide excision repair factor 4
           complex [Pichia angusta DL-1]
          Length = 1082

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L        HGL +      + F +  W+     + +E   + R  + G  + V+V  L
Sbjct: 880 VLVMDVKLASHGLTI-ISATNVFFLNPIWN-----KTVEAQAIKRSHRIGQTKEVYVETL 933

Query: 171 IAQNTIDELVL-QRLRTKSTIQDLLLN 196
           I  NTI++ +  +R +TK      L++
Sbjct: 934 ILDNTIEKEMYLKRSQTKVDETKELID 960


>gi|170696668|ref|ZP_02887785.1| helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138411|gb|EDT06622.1| helicase domain protein [Burkholderia graminis C4D1M]
          Length = 1081

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 26/95 (27%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
                          R      +   L +       +N    P + A  +    GL+   
Sbjct: 851 DIKPFETRIRTHFALRFGNQQGEDGALARRKVVQAAFNSPFWPFVLASTSVGQEGLDFHN 910

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
             + +V ++L  +  + +Q   R+   +       
Sbjct: 911 WCHSVVHWNLPSNPVDMEQREGRVHRYKGYAVRKN 945


>gi|207343185|gb|EDZ70726.1| YLR032Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1126

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 19/152 (12%)

Query: 21   EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD 80
               +  +  +K LQL    +          +  +       I+EK       + + F+ D
Sbjct: 992  SKSSKITALLKELQL----LQDSSAGEQVVIFSQ-FSTYLDILEKE------LTHTFSKD 1040

Query: 81   LARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +A++ K   +    ++         +      +L     + G GLNL    +       W
Sbjct: 1041 VAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLT-CASHAYMMDPW 1099

Query: 139  WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            W        +E   + R  + G   +V V   
Sbjct: 1100 WSPS-----MEDQAIDRLHRIGQTNSVKVMRF 1126


>gi|294789356|ref|ZP_06754594.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
 gi|294482781|gb|EFG30470.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
          Length = 2270

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 14/204 (6%)

Query: 6    KFQRELYCD-----LQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            + Q E   D     +  +      +  + VK  Q      Y D     K    ++I  +E
Sbjct: 1709 QMQLENMLDAANVHIGNKISPKVAALLENVKKEQA--HIRYKDASGSLKNKFAKQIIFVE 1766

Query: 61   VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPA 117
             +         IV             +       D+     + +N        ++     
Sbjct: 1767 SLAMHTKIKRAIVQNCGIPASKITFISGKFNSDPDEIIDVQERFNSDDEENGYVIVIANK 1826

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                G+NLQ G   +    L W  +   Q   R       Q      V VY+  A  T D
Sbjct: 1827 KAEVGINLQKGCQAIHHLELNWTPDSITQRNGRGIR----QGNTAEKVNVYFYEADGTFD 1882

Query: 178  ELVLQRLRTKSTIQDLLLNALKKE 201
                  +  KS   + +++  + E
Sbjct: 1883 TYRRTTIDRKSNWIESVMSKAENE 1906


>gi|40643146|emb|CAE14681.1| unnamed protein product [Leptospira phage LE1]
          Length = 1971

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 95   DKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +      ++N       +         G++L     +     + W+     Q   R   
Sbjct: 1626 KRFTEITNDFNNINGKCKIIIGTDVIKEGVDLNGNTAVAYNSCIDWNPTTEVQKRGRHHR 1685

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
                 +     V    ++ +++ID  + Q+   K +  + +      + I +
Sbjct: 1686 PGNLLS----NVMWVDVLMEDSIDSKLYQKQGEKISRINQVFEKDGSKAIDI 1733


>gi|196010716|ref|XP_002115222.1| hypothetical protein TRIADDRAFT_59182 [Trichoplax adhaerens]
 gi|190581993|gb|EDV22067.1| hypothetical protein TRIADDRAFT_59182 [Trichoplax adhaerens]
          Length = 974

 Score = 43.2 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 41/172 (23%), Gaps = 42/172 (24%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDEEK---------------------------HWKEVH 52
           + + +  ++     ++ +                                          
Sbjct: 358 MSSHSPLTELTVLKKICDHPRLLSSHACSELGLEEDDDDEVVEYKDFARSLPAIRVLLEE 417

Query: 53  DEKIKALEVII--EKANAAPIIVAYHFNSDLAR-----------LQKAFPQGRTLDKDPC 99
             K++ L  ++   + N    ++       L             + +         +   
Sbjct: 418 AGKLQLLADLLENFEINGHRCLIFSQSRKMLNIIQKVVTERGYKMLRIDGTVTKPGRRME 477

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +QE+                G GLNL    + ++ F   W+     Q ++R
Sbjct: 478 LVQEFQTNSSYLCFLLTTQVGGVGLNLTA-ADRVIIFDPSWNPATDAQAVDR 528


>gi|190015603|ref|YP_001967159.1| hypothetical protein BcAH187_pCER270_0012 [Bacillus cereus]
 gi|217956928|ref|YP_002336024.1| hypothetical protein BCAH187_C0012 [Bacillus cereus AH187]
 gi|116584510|gb|ABK00627.1| conserved hypothetical protein [Bacillus cereus]
 gi|217068442|gb|ACJ82690.1| conserved hypothetical protein [Bacillus cereus AH187]
          Length = 1098

 Score = 43.2 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 824 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 877

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 878 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|213972112|ref|ZP_03400204.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213923150|gb|EEB56753.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 72

 Score = 43.2 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               ++     R  + G  R V V   +A +TID+ + Q L  K  +   L++   +E
Sbjct: 5   WTPGLQDQAEDRAYRNGQLRMVVVKIPLADDTIDQQLWQMLMDKRALASDLIDLEAEE 62


>gi|221067005|ref|ZP_03543110.1| SNF2-related protein [Comamonas testosteroni KF-1]
 gi|220712028|gb|EED67396.1| SNF2-related protein [Comamonas testosteroni KF-1]
          Length = 797

 Score = 43.2 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K    + +  E  I +L  +P     GL+L     I    S +                R
Sbjct: 674 KREDWVADQVERGIDVLITNPELVKTGLDLLEFPTIAFMQSGFNVYTML------QAARR 727

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V +L    T     L+ +  K  +       + +  + V
Sbjct: 728 SWRIGQKHDVRVIFLGYAGTSQMECLRLMAKKIAVSQSTSGDMPESGLDV 777


>gi|229113041|ref|ZP_04242541.1| hypothetical protein bcere0018_52550 [Bacillus cereus Rock1-15]
 gi|228670434|gb|EEL25777.1| hypothetical protein bcere0018_52550 [Bacillus cereus Rock1-15]
          Length = 1098

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 824 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 877

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 878 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|241662280|ref|YP_002980640.1| DEAD-like helicase [Ralstonia pickettii 12D]
 gi|240864307|gb|ACS61968.1| DEAD-like helicase [Ralstonia pickettii 12D]
          Length = 760

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 638 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 691

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    +     L  +  K  +       + +  + V
Sbjct: 692 SWRIGQKQPVRVIYLGYAASSQMTCLGLMARKIMVSQSTSGDVPESGLDV 741


>gi|296131125|ref|YP_003638375.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022940|gb|ADG76176.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
          Length = 946

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    I+         +         G+NLQ     +V + L W+   H+Q   R+ 
Sbjct: 519 PPAERQERIRALTSTDARHVLVATDCLSEGVNLQDAFQAVVHYDLAWNPTRHEQREGRVD 578

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              Q  A   RAV +Y     N+ID LVL  L  +  
Sbjct: 579 RFGQT-APTVRAVTIY--GKDNSIDGLVLDVLIRRHQ 612


>gi|229142277|ref|ZP_04270799.1| hypothetical protein bcere0013_53620 [Bacillus cereus BDRD-ST26]
 gi|228641215|gb|EEK97524.1| hypothetical protein bcere0013_53620 [Bacillus cereus BDRD-ST26]
          Length = 1086

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 824 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 877

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 878 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|168183745|ref|ZP_02618409.1| helicase, Snf2 family [Clostridium botulinum Bf]
 gi|182673113|gb|EDT85074.1| helicase, Snf2 family [Clostridium botulinum Bf]
          Length = 900

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    +    I+   +     +     +   GLNLQ  G ++  F L W+    +Q   R
Sbjct: 733 GIYSKRTKEEIKSMVKRYEIKILLGTDAASEGLNLQTLGTLIN-FDLPWNPTRLEQRKGR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I    Q        V++Y +  ++++++ V   L  +      +  
Sbjct: 792 IQRIGQVNDV----VYIYNMRYKDSVEDRVHSMLSERLENIHNMFG 833


>gi|8188|emb|CAA44496.1| lodestar protein [Drosophila melanogaster]
          Length = 974

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA-----VYYDEEKHWKEVHDEKIKA 58
           Y   ++        + +++ +     ++  Q+         +   EE      H      
Sbjct: 767 YKMHEKFARMAGSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDT 826

Query: 59  LE-VIIEKANA 68
            E  ++ + N 
Sbjct: 827 PEIDLLAQLNK 837


>gi|241765668|ref|ZP_04763619.1| DEAD-like helicase [Acidovorax delafieldii 2AN]
 gi|241364481|gb|EER59578.1| DEAD-like helicase [Acidovorax delafieldii 2AN]
          Length = 759

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K +V V YL    T     L+ +  K  +       + +  + V
Sbjct: 691 SWRIGQKLSVRVIYLGYAATSQMTCLELMAKKIMVSQSTSGDVPESGLDV 740


>gi|237795505|ref|YP_002863057.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
 gi|229260745|gb|ACQ51778.1| helicase, Snf2 family [Clostridium botulinum Ba4 str. 657]
          Length = 900

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    +    I+   +     +     +   GLNLQ  G ++  F L W+    +Q   R
Sbjct: 733 GIYSKRTKEEIKSMVKRYEIKILLGTDAASEGLNLQTLGTLIN-FDLPWNPTRLEQRKGR 791

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
           I    Q        V++Y +  ++++++ V   L  +      +  
Sbjct: 792 IQRIGQVNDV----VYIYNMRYKDSVEDRVHSMLSERLENIHNMFG 833


>gi|167841314|ref|ZP_02467998.1| helicase domain protein [Burkholderia thailandensis MSMB43]
          Length = 936

 Score = 43.2 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           K   L +      ++     V    I     +                       +    
Sbjct: 456 KLRLLGSHLKQLIDDGFNPVVFCRYIATARYLHNHLTG----------RFRGVTVEVVTG 505

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
               ++    +    E +  LL A       G+NLQ   + +V + L W+   H+Q   R
Sbjct: 506 EFPAEERERRVDALGEAERRLLIAT-DCLSEGINLQENLDAVVHYDLSWNPTRHEQREGR 564

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
           +    Q  +   RA  +Y   A N +D  VLQ +  K+ 
Sbjct: 565 VDRFGQT-SPRVRATLIY--GANNPVDGAVLQVILRKAE 600


>gi|328859650|gb|EGG08758.1| hypothetical protein MELLADRAFT_84282 [Melampsora larici-populina
           98AG31]
          Length = 112

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            +        + G GLN+    + +      W+ +  QQ ++R+      + G    V  
Sbjct: 1   MVEAFVVLIEAGGVGLNMT-CADEVYSMDAHWNPQVVQQAVDRL-----YRIGQTMPVRA 54

Query: 168 YYLIAQNTIDELVLQR 183
           ++++   +I++ +   
Sbjct: 55  FHVVTGQSIEQHLYNV 70


>gi|40445356|ref|NP_954816.1| helicase [Gordonia westfalica]
 gi|40217386|emb|CAE09137.1| putative helicase; putative methylase [Gordonia westfalica]
          Length = 1630

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             G+I +L    +  G G+N+Q     L    + W   + +Q   RI      Q      +
Sbjct: 1170 AGRIAVLVGSTSKMGTGMNVQGRLIGLHHMDVPWRPADLEQREGRIIR----QGNQNPRI 1225

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             +   +   T D ++  ++ +K+   + 
Sbjct: 1226 EILNYVTAGTTDTVMWSKVESKAAFIEQ 1253


>gi|316974660|gb|EFV58143.1| domain protein, SNF2 family [Trichinella spiralis]
          Length = 737

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
               R  + G   +V + YL+A+ T D+ +   ++ K  I
Sbjct: 629 QAEDRAHRVGQLNSVLIIYLVAKGTADDNIWTMIKKKLEI 668


>gi|147920338|ref|YP_685889.1| Hef nuclease [uncultured methanogenic archaeon RC-I]
 gi|110621285|emb|CAJ36563.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 792

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 38/220 (17%)

Query: 1   MKQY-HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI-KA 58
           +++Y  + + E          +A     +  +       A+    E        EK+ + 
Sbjct: 308 LRRYFERMKEEAST---KGGSKATRRLFEDARLQ----HAMRVTNETDEVNPKTEKVAEI 360

Query: 59  LEVIIEKANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPC 99
           +   ++   A+ +IV  ++                      + +  K   +G +  K   
Sbjct: 361 VLEQLQANPASKVIVFTNYRDTADVVAKRLAEVEGIKPVRFVGQASKLNDKGLSQKKQVE 420

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +  G+   L A  +    GL++    ++++F+          Q   R G     + 
Sbjct: 421 ILDRFRAGEYNTLIAT-SVAEEGLDIPST-DLVLFYEPVPSEIRSIQRRGRTGRNTVGR- 477

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  V  LI++ T DE   +  ++K       +  +K
Sbjct: 478 -------VVVLISKGTRDEAAYRSSQSKERKMYKTMQNMK 510


>gi|295701500|ref|YP_003610501.1| helicase [Burkholderia sp. CCGE1002]
 gi|295441823|gb|ADG20990.1| helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            +       +A   +SD         +     +     + +  G+   L +  AS   G N
Sbjct: 877  ENPGVLNAIARELSSDGVDTVLFHGEIPISKRVADKDRRFITGRATGLLSTKASGRAGYN 936

Query: 125  LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
            L    + ++F+   W        IE   + R  +   K  + V Y     +IDE   Q +
Sbjct: 937  LPN-ADYVLFYDRSWTW-----RIEYQAMRRALRWNRKGMLNVEYFHLPGSIDEYQAQMV 990

Query: 185  RTKSTIQDLLLN 196
              K       L+
Sbjct: 991  AHKRDSMQAGLD 1002


>gi|169601474|ref|XP_001794159.1| hypothetical protein SNOG_03602 [Phaeosphaeria nodorum SN15]
 gi|111067687|gb|EAT88807.1| hypothetical protein SNOG_03602 [Phaeosphaeria nodorum SN15]
          Length = 986

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 53  DEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPC 99
             K++AL  I++   +  +   IV   + S L  L+     G           T  +   
Sbjct: 780 SSKVEALLDILKATSQDPSNKTIVFSQWTSFLDLLEPHLTAGGLTFTRIDGSMTAPQRDT 839

Query: 100 TIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +          ++ A  A C  GLNL    N ++    WW        IE   V R  +
Sbjct: 840 ALDALESNPNCTIMLASLAVCSVGLNLVA-ANHVIMADSWWAPA-----IEDQAVDRVHR 893

Query: 159 AGFKRAVFVY 168
            G KR   V+
Sbjct: 894 LGQKRETKVF 903


>gi|255089767|ref|XP_002506805.1| predicted protein [Micromonas sp. RCC299]
 gi|226522078|gb|ACO68063.1| predicted protein [Micromonas sp. RCC299]
          Length = 1263

 Score = 43.2 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 110  PLLFAHPASCGHGLNLQYGGNILVFFS----------LWWDLEEHQQMIERIGVTRQRQA 159
             ++     S   GLNL    ++++                         ER  V R  + 
Sbjct: 1176 RVMCLAFGSHASGLNLHRANHVVIVHPFAAKSVCPGAPDLTPLAQAAAYERQAVGRIARY 1235

Query: 160  GFKRAVFVYYLIAQNTIDELVLQR 183
              ++    Y + A  T++E +   
Sbjct: 1236 PQRKTCHAYRMFAVGTVEEELYAV 1259


>gi|228969844|ref|ZP_04130581.1| hypothetical protein bthur0004_64810 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228789869|gb|EEM37714.1| hypothetical protein bthur0004_64810 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1096

 Score = 43.2 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 824 TPPKRSAWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 877

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 878 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 919


>gi|307111221|gb|EFN59456.1| hypothetical protein CHLNCDRAFT_138032 [Chlorella variabilis]
          Length = 1211

 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 96   KDPCTIQEWNEGKI-----PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            +    +Q +N           LF              G +  +F    W         + 
Sbjct: 980  ERQQAVQRFNAAAGAGGAQRWLFLQHTRSCGVGTDLPGIDAAIFLDSDWSA-----RKDA 1034

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
              ++   + G    + VY L  + T +E +LQ       +  
Sbjct: 1035 QALSHALRVGSPDRLRVYRLYCRRTCEERLLQLSDRMRGLDA 1076


>gi|229164867|ref|ZP_04292685.1| hypothetical protein bcere0009_55430 [Bacillus cereus R309803]
 gi|228618588|gb|EEK75596.1| hypothetical protein bcere0009_55430 [Bacillus cereus R309803]
          Length = 1108

 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  K    ++E     + ++         GL+L      L+F+ L + L           
Sbjct: 834 TPPKRSEWLKEQVNSGVNVIICSQELVKVGLDLLAT-PTLIFYQLSFSLFTL-----NQA 887

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             R  + G  +    +YL  + T  E + Q +  K+   + +
Sbjct: 888 ARRHWRIGQTKQCRTFYLGYRETFQEQMAQLIAQKNKAAEAM 929


>gi|145351304|ref|XP_001420022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580255|gb|ABO98315.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1148

 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 91  GRTLDKDPCTIQEWNEGK---------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
               D+    + ++ EG          + +      + G GL+     + ++F  L  D 
Sbjct: 583 STPSDERKVLVDKFREGAQTREDGVVGVRVALLSVKAAGTGLDF-STASCVIFAELPDDA 641

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI---DELVLQRLRTKSTIQDLLLNAL 198
              +         R  + G    V VY+L A+      DE    RL ++  +    L+  
Sbjct: 642 SLLE-----QAEDRAHRRGNDSGVNVYFLCARGGACAHDEDRWARLESQLDLCREALDGD 696

Query: 199 KKET 202
            +  
Sbjct: 697 GERV 700


>gi|308051050|ref|YP_003914616.1| SNF2-related protein [Ferrimonas balearica DSM 9799]
 gi|307633240|gb|ADN77542.1| SNF2-related protein [Ferrimonas balearica DSM 9799]
          Length = 956

 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  + L+ F L  + +  +
Sbjct: 524 FHEGMSILERDKAAAFFAQQEGGAQVLICS-EIGSEGRNFQF-AHHLIMFDLPQNPDLLE 581

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  + V ++    + +
Sbjct: 582 QRIGRLD-----RIGQTQDVQIHVPYIEGS 606


>gi|28199206|ref|NP_779520.1| hypothetical protein PD1321 [Xylella fastidiosa Temecula1]
 gi|182681936|ref|YP_001830096.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|28057312|gb|AAO29169.1| phage-related protein [Xylella fastidiosa Temecula1]
 gi|182632046|gb|ACB92822.1| hypothetical protein XfasM23_1406 [Xylella fastidiosa M23]
 gi|307578194|gb|ADN62163.1| hypothetical protein XFLM_00705 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 55

 Score = 42.8 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 29/38 (76%)

Query: 164 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            VF+++++A +T+DELV+ R  +K  +QDLLL A+K+ 
Sbjct: 4   PVFIHHIVAADTVDELVMVRRESKREVQDLLLEAVKRR 41


>gi|299531101|ref|ZP_07044514.1| helicase domain-containing protein [Comamonas testosteroni S44]
 gi|298721058|gb|EFI62002.1| helicase domain-containing protein [Comamonas testosteroni S44]
          Length = 797

 Score = 42.8 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           K    + +  E  I +L  +P     GL+L     I    S +                R
Sbjct: 674 KREDWVADQVERGIDVLITNPELVKTGLDLLEFPTIAFMQSGFNVYTML------QAARR 727

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V +L    T     L+ +  K  +       + +  + V
Sbjct: 728 SWRIGQKHDVRVIFLGYAGTSQMECLRLMAKKIAVSQSTSGDMPESGLDV 777


>gi|10954867|ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens]
 gi|6498220|dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens]
          Length = 1693

 Score = 42.8 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    L          +   K     + +     G++  L     + 
Sbjct: 1312 EKTRGFSAYRWIRDELIRLGVPASEIAFMQDFKKSEAKQRLFGDVRAGRVRFLIGSSETM 1371

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N+Q     L    + W   + +Q   RI      Q      V ++    + ++D  
Sbjct: 1372 GTGVNVQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSLDAT 1427

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1428 MWQNNERKARFIAAALSG 1445


>gi|108763517|ref|YP_632454.1| putative helicase [Myxococcus xanthus DK 1622]
 gi|108467397|gb|ABF92582.1| putative helicase [Myxococcus xanthus DK 1622]
          Length = 993

 Score = 42.8 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            D  R           +      + +N    P++         GL+L +    +V   L 
Sbjct: 830 DDAVRAGALVRHTVEGESRERLREAFNTPLYPMVLVANEVMQEGLDLHHHCRRVVHHDLA 889

Query: 139 WDLEEHQQMIERIGVT----RQRQAGFKRAV-FVYYLIAQNTIDELVLQRLRTKSTIQDL 193
           W+  + +Q + R+       ++ +A        V+  +  NTIDE + + +R +    + 
Sbjct: 890 WNPAQLEQRVGRVDRLGSLVQRLRARQPDTTLDVHLPLIANTIDERLERTVRLRERWLEF 949

Query: 194 LLNA 197
           LL A
Sbjct: 950 LLGA 953


>gi|325853894|ref|ZP_08171410.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
 gi|325484231|gb|EGC87161.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 542

 Score = 42.8 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I+  N+G++ +LF   +  G G+N Q     +      W   +  Q   R      
Sbjct: 151 KKAVIEAMNDGRVRVLFGSTSMLGTGVNAQQRAVAVHHLDTPWRPSDLAQRDGRAVRKGN 210

Query: 157 --RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
              +      V V     + ++D      L  K T    L
Sbjct: 211 EIARLYADNKVDVIIYAVEKSLDSYKFNLLHCKQTFISQL 250


>gi|304395575|ref|ZP_07377458.1| helicase domain protein [Pantoea sp. aB]
 gi|304356869|gb|EFM21233.1| helicase domain protein [Pantoea sp. aB]
          Length = 954

 Score = 42.8 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 99  CTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
            T++ + + + PL L         G+NL +  + +V F + W L   QQ   RI      
Sbjct: 491 ETVEAFGKQQSPLRLLICSDVASEGINLHHLSHKMVHFDIPWSLMVFQQRNGRID----- 545

Query: 158 QAGFKRAVFVYYLIAQ------NTIDELVLQRLRTKSTIQDL 193
           + G K    + YL+ +      N  D  VLQ L  K      
Sbjct: 546 RYGQKHVPQIRYLLTEANEPQING-DMRVLQVLINKDEQAQK 586


>gi|313105927|ref|ZP_07792189.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa 39016]
 gi|310878691|gb|EFQ37285.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa 39016]
          Length = 749

 Score = 42.8 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 627 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 681 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 738


>gi|186687127|ref|YP_001870270.1| helicase domain-containing protein [Nostoc punctiforme PCC 73102]
 gi|186469430|gb|ACC85229.1| helicase domain protein [Nostoc punctiforme PCC 73102]
          Length = 946

 Score = 42.8 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 14/138 (10%)

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKI 109
           +  +        I   ++ +D  R +      +          + D+    ++E      
Sbjct: 484 KDEMNPIVWCRYIATANYVADALRQKLQKKGSQIRVIAITGELSEDEREIRLEELKSYPQ 543

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A       G+NLQ   + ++ + L W+    +Q   RI    Q     K  +    
Sbjct: 544 RVLVAT-DCLSEGVNLQTHFSAVIHYDLPWNPNRLEQREGRIDRYGQTATKVKACLLYGR 602

Query: 170 LIAQNTIDELVLQRLRTK 187
               N +D  VL  L  K
Sbjct: 603 ---DNPVDGAVLDVLIRK 617


>gi|251788102|ref|YP_003002823.1| DEAD-like helicase [Dickeya zeae Ech1591]
 gi|247536723|gb|ACT05344.1| DEAD-like helicase [Dickeya zeae Ech1591]
          Length = 759

 Score = 42.8 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYTLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G  + V V YL    T     L  +  K  +       + +  + V
Sbjct: 691 SWRIGQTQPVKVIYLGYAATSQMTCLALMAKKILVSQSTSGDVPESGLDV 740


>gi|209886780|ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209874976|gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 1700

 Score = 42.8 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 70   PIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASCGHG 122
                AY +  D    +          +   K     + +     GK+  L     + G G
Sbjct: 1319 RGFSAYRWVRDELIRMGVPASEIAFMQEFKKSEAKQRLFGDVRAGKVRFLIGSSETMGTG 1378

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            +N Q     L    + W   + +Q   RI      Q      V ++    + ++D  + Q
Sbjct: 1379 VNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSLDAQMWQ 1434

Query: 183  RLRTKSTIQDLLLNA 197
                K+      L+ 
Sbjct: 1435 NNERKARFIAAALSG 1449


>gi|88809325|ref|ZP_01124833.1| possible helicase [Synechococcus sp. WH 7805]
 gi|88786544|gb|EAR17703.1| possible helicase [Synechococcus sp. WH 7805]
          Length = 502

 Score = 42.8 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----RTLDKDPCTIQEWNEG 107
           K+ A E ++++  A    +++   F + LA LQ+          +  ++    +  + +G
Sbjct: 339 KLPAAERLVQQLRAQGESVVLFSSFVAPLALLQQRLGGELLSGRQKPEERQMAVDRFQDG 398

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL A   + G G  L      +V     W   +           R  + G    +  
Sbjct: 399 STDLLLATFGAGGLGFTLHR-ARQVVLLERPWTPGDVD-----QAEDRCHRLGMDGELMS 452

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKETI 203
           ++L      D+LV   + +K++  +LL+     +++++++
Sbjct: 453 HWLQL-GPADQLVDGLVASKASRIELLMGPRRVSVERQSL 491


>gi|332159200|ref|YP_004424479.1| ATP-dependent RNA helicase HepA, putative [Pyrococcus sp. NA2]
 gi|331034663|gb|AEC52475.1| ATP-dependent RNA helicase HepA, putative [Pyrococcus sp. NA2]
          Length = 1029

 Score = 42.8 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 22/200 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            + ++    ++    I      +K  + L++ +  +   E+ +   +  E +      + 
Sbjct: 370 ERLKK--LIEMGESIIRRERIDTKAKELLKIVDEHL---EKGNKVIIFTEYLD-TLFYLN 423

Query: 65  KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
           +                 R+   +   +  +KD    + W E    +L A  A+    L+
Sbjct: 424 EILGEKYGP--------ERVTLIYGSMKPEEKDESVRKLWAEDGASILIATDAAG-ESLD 474

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV-FVYYLIAQNTIDELVLQR 183
           LQ   N+++ + + W+   + Q I R+      + G K+ V F+Y ++    ++  VL+ 
Sbjct: 475 LQA-ANVVINYEIPWNPVVYIQRIGRV-----YRYGQKKPVIFIYGILPVFKVERRVLEV 528

Query: 184 LRTKSTIQDLLLNALKKETI 203
           +  K        +    E +
Sbjct: 529 VLDKINKIKTDFDLGSAEIV 548


>gi|261820937|ref|YP_003259043.1| DEAD/DEAH box helicase [Pectobacterium wasabiae WPP163]
 gi|261604950|gb|ACX87436.1| DEAD-like helicase [Pectobacterium wasabiae WPP163]
          Length = 759

 Score = 42.8 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 637 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYTLQ------QAARR 690

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K+ V V YL    T     L  +  K  +       + +  + V
Sbjct: 691 SWRIGQKQPVKVIYLGYTATSQMTCLALMAKKILVSQSTSGDVPESGLDV 740


>gi|328885780|emb|CCA59019.1| helicase [Streptomyces venezuelae ATCC 10712]
          Length = 1082

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 89  PQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G   ++       +        + +L A   +   G++LQ   + LV + + ++  + 
Sbjct: 583 HGGMNAEERERLRLAFQAEPAENDVRILLAT-DAASEGIDLQRHCHRLVNYDIPFNPNKL 641

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174
           +Q I RI    Q  A       + + I   
Sbjct: 642 EQRIGRIDRYGQTTAPQ-----IVHFIGSG 666


>gi|121594543|ref|YP_986439.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606623|gb|ABM42363.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 1046

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 38/161 (23%)

Query: 67  NAAPIIVAYHFNSDLARLQKAF-------------PQGRTLDKDPCTIQEWN----EGKI 109
           N   +I+   + +    + +                 G T D+       +     +  +
Sbjct: 520 NDRRVILFTEYRTTHQWMHEILASHGFGGERLGLLHGGLTQDEREPIKAAFQASPKDSPV 579

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A   +   G++LQ   N L+   + ++    +Q   RI    QR    ++ V +++
Sbjct: 580 RILLAT-DAASEGIDLQNHCNCLIHLEIPYNPNVMEQRNGRIDRHGQR----EKEVLIWH 634

Query: 170 LI--------AQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            +        +     + +L+ LR         L +++ + 
Sbjct: 635 PVDGGDKSHASVGGHGDDILRALRK--------LESMRADM 667


>gi|148807330|gb|ABR13404.1| putative helicase [Pseudomonas aeruginosa]
          Length = 749

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 627 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 681 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 738


>gi|298251768|ref|ZP_06975571.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297546360|gb|EFH80228.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 1065

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 89  PQGRTLDKDPCTIQEWN----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
             G            +     +  + +L A   +   G++LQ   + L+ + + W+    
Sbjct: 566 YGGMDTKDREEVKAAFQADPDDASVRILLAT-DAASEGIDLQNHCSRLIHYEIPWNPNRL 624

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIA 172
           +Q   R+    Q +A     V +Y+ ++
Sbjct: 625 EQRNGRVDRHGQ-RAPQ---VDIYHFVS 648


>gi|254238747|ref|ZP_04932070.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170678|gb|EAZ56189.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 751

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 629 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 682

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 683 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 740


>gi|297820192|ref|XP_002877979.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297323817|gb|EFH54238.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1370

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 12/173 (6%)

Query: 36   ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLD 95
             +G     E                +I  +      ++     +   +  K +    + +
Sbjct: 1164 TSGTFLGKESHGQDCGSQMVFVDKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMHSCN 1223

Query: 96   KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
            K        N+     L     S   GL+L +  ++ +   +W       + +E   ++R
Sbjct: 1224 KMKSLAMFQNDADCMALLM-DGSAALGLDLSFVTHVFLMEPIWD------KSLEEQVISR 1276

Query: 156  QRQAGFKRAVFVYYLIAQNTIDELVLQRLR--TKST--IQDLLLNALKKETIH 204
              + G KR +FV  L    TI+E +++ L    KS   +    + A K+ET  
Sbjct: 1277 AHRMGAKRPIFVETLTMCGTIEEQMMRFLEDAEKSDRLLSGDYIEA-KQETTR 1328


>gi|116052629|ref|YP_792944.1| hypothetical protein PA14_59540 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481674|gb|AAP84188.1| plasmid related protein [Pseudomonas aeruginosa PA14]
 gi|115587850|gb|ABJ13865.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 749

 Score = 42.8 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 627 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 681 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 738


>gi|152986816|ref|YP_001349842.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa PA7]
 gi|150961974|gb|ABR83999.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa PA7]
          Length = 749

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 627 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 680

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 681 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 738


>gi|47079403|gb|AAT10146.1| ATP-dependent RNA helicase [uncultured marine group II
           euryarchaeote DeepAnt-JyKC7]
          Length = 878

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             + + +K+   G T  +    I+E+  G   +L A  +    GL++    ++++F+   
Sbjct: 393 QFIGQSRKSSAGGLTPKQQVARIEEFRSGSANVLIAT-SVGEEGLDIPT-ADLVIFYEPV 450

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                     E   + R+ + G  R   V  LIA++T DE        K       +  +
Sbjct: 451 PS--------EIRTIQRRGRTGRHRDGDVVVLIAEDTRDEGARAAALRKEENMHRAVQRV 502

Query: 199 KK 200
           ++
Sbjct: 503 RR 504


>gi|29376809|ref|NP_815963.1| hypothetical protein EF2307 [Enterococcus faecalis V583]
 gi|29344274|gb|AAO82033.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 3173

 Score = 42.8 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++ +L    A  G G N+Q            W   + +Q
Sbjct: 2770 FIHDANTETQKAELFAKVRRGQVRVLIGSTAKMGAGTNVQNRIVASHDLDCPWRPADLEQ 2829

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R      RQ     +V ++  + + T D      +  K      ++ +
Sbjct: 2830 RAGR----SLRQGNMNASVKMFKYVTKGTFDAYNWGLVENKQKFIGQIMTS 2876


>gi|255544007|ref|XP_002513066.1| conserved hypothetical protein [Ricinus communis]
 gi|223548077|gb|EEF49569.1| conserved hypothetical protein [Ricinus communis]
          Length = 1322

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 7/153 (4%)

Query: 34   QLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT 93
            Q+        +         +K     +I  +      ++         +    +    +
Sbjct: 1130 QIGESNALLQDCSRQSSESYKKAPEKVLIFSQFLEHIHVIEQQLTFAGIKFAGLYSPMHS 1189

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +K        ++     L     S   GL+L +  ++ +   +W       + +E   +
Sbjct: 1190 SNKMKSLATFQHDATCLALLM-DGSAALGLDLSFVTHVFLMEPIWD------RSMEEQVI 1242

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            +R  + G  R V V  L  + TI+E +L+ L+ 
Sbjct: 1243 SRAHRMGATRPVQVETLAMRGTIEEQMLEFLQD 1275


>gi|171685256|ref|XP_001907569.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942589|emb|CAP68241.1| unnamed protein product [Podospora anserina S mat+]
          Length = 255

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 41/174 (23%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD- 97
            +        + V   ++  +       N +P IV   +   L  +     + + L +  
Sbjct: 86  HLQQTPRDTKRYVGSARLAEVLENQAYIN-SPSIVFSCWTKTLDLVALHLTRMKILHQRI 144

Query: 98  ---PCTIQEWNEGK---------IPLLFAHPASCGHGL---------------------- 123
                  +  +            +P+L         G                       
Sbjct: 145 DGRQKLAERQHNMSRFVSDEGTSVPVLLTTTGVGAFGYVPSPPTPRYPNLANHPTSRVSR 204

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                 N +      W+       +E   ++R  + G K+ V V   +   T++
Sbjct: 205 LNLTAANHVYILEPQWNPS-----VESQALSRVARRGQKKTVLVTRYLVHGTVE 253


>gi|159472472|ref|XP_001694375.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
 gi|158277038|gb|EDP02808.1| SWI/SNF chromatin remodeling complex component [Chlamydomonas
           reinhardtii]
          Length = 837

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 26/130 (20%)

Query: 68  AAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNE--GKIPLLFAH 115
              +I+   F   L  L++                +  +    I  +N+           
Sbjct: 452 GHRLIIFSQFTRTLDLLEEWLNGRGLGYMRIDGTVSGSERQRRIDRFNQQPDAYFAFLLS 511

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER------------IGVTRQRQAGFKR 163
             + G G+NL    + ++ F   W+     Q + R            I V    Q     
Sbjct: 512 TRAGGLGINL-ATADTVIIFDSDWNPHNDLQ-VSRKKMMLEHLVLWLIAVHDLDQRDLCV 569

Query: 164 AVFVYYLIAQ 173
             +VY ++ +
Sbjct: 570 PAWVYRIVCE 579


>gi|254244594|ref|ZP_04937916.1| hypothetical protein PA2G_05460 [Pseudomonas aeruginosa 2192]
 gi|126197972|gb|EAZ62035.1| hypothetical protein PA2G_05460 [Pseudomonas aeruginosa 2192]
          Length = 751

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 629 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 682

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 683 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 740


>gi|310831120|ref|YP_003969763.1| putative superfamily II helicase/VV D11-like transcription factor
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386304|gb|ADO67164.1| putative superfamily II helicase/VV D11-like transcription factor
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 570

 Score = 42.4 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 22/188 (11%)

Query: 29  TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
             K  Q          E       + K         +         +    +  R    +
Sbjct: 374 LKKLKQ---------SEGPCFVYSNFKTYGGIDCFIRVLKKHGWKDFKKQGEGTRRFAIW 424

Query: 89  PQGRTLDKDPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
               T++        +N      G    L     S   G+ L      +     +W+L  
Sbjct: 425 SGDETMEYKSLVKSTFNQPNNHNGSKLHLILGSPSIKEGVTL-KRLEQMHILEPYWNLSR 483

Query: 144 HQQMIERIGVTRQRQ--AGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQDLLLN 196
             Q+I R             KR V +Y  +A+      ++DE + +  + K+ + +    
Sbjct: 484 MLQIIGRGVRYCSHADLPKRKRKVDIYLYLAKTPDNRESVDEYIWKLAKQKAKLINQFEK 543

Query: 197 ALKKETIH 204
            +K+  I 
Sbjct: 544 TMKEHAID 551


>gi|307580244|gb|ADN64213.1| SNF2-related protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)

Query: 2   KQYHKFQRELYCDLQ-GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV 51
           + Y   +++++  L+ G  +EAFN+ASKT+KCLQLANGA+Y D+ +   EV
Sbjct: 257 RLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDDTRQAWEV 307


>gi|170068621|ref|XP_001868938.1| rothmund-thomson syndrome DNA helicase recq4 [Culex
           quinquefasciatus]
 gi|167864601|gb|EDS27984.1| rothmund-thomson syndrome DNA helicase recq4 [Culex
           quinquefasciatus]
          Length = 1093

 Score = 42.4 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 13/158 (8%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
           + Y   +   E     ++      ++ + A    A      +    + +  G    +   
Sbjct: 583 IVYCTRRDECERISGFLRTCFQDAQRESEAKEGAASKKRKRVNYTAEPYHAGMPSSRRRT 642

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER--------- 150
               +  G++ ++ A  A              ++ +++  + E + Q + R         
Sbjct: 643 IQNAFMSGELRIVVATIAFGMGINK--SDIRAIIHYNMPRNFESYVQEVGRAGRDGKPSH 700

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             V    + G +  +     I  N+ID  V+++L  K 
Sbjct: 701 CHVFLDNRGGDRNELR--RHIYANSIDRHVIRKLLQKI 736


>gi|107099832|ref|ZP_01363750.1| hypothetical protein PaerPA_01000852 [Pseudomonas aeruginosa PACS2]
 gi|37955709|gb|AAP22548.1| putative helicase [Pseudomonas aeruginosa]
          Length = 751

 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 629 RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 682

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 683 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 740


>gi|298254935|ref|ZP_06978521.1| Snf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 1203

 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 8/90 (8%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 5   HKFQRELYCDLQGEN--IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            + +      +  +          S  ++  Q+ +    + E+         K+ +L  +
Sbjct: 813 QQMRDH-LAQVSEQEFQRSRVEILSGLMRLRQICDTPALFMEDYQGA---SGKLDSLRDL 868

Query: 63  IEK--ANAAPIIVAYHFNSDLARLQKAFPQ 90
           + +       +++   F   L ++++A+  
Sbjct: 869 LVQVADGGHRVLIFSQFKGMLEKIEQAYTY 898


>gi|331230449|ref|XP_003327889.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309306879|gb|EFP83470.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 299

 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEVH---DEKIKALEV----IIEKANAAPIIV 73
           ++ +   + V   QL N     ++EK           KI  L       +   N A  ++
Sbjct: 156 DSSHFFGELVNLRQLCNHPALIEKEKGTGGYFWNQSSKIVHLLKDLSLFLASGNQARAVI 215

Query: 74  AYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
              F   L            +    + +     +         +    +L A   + G G
Sbjct: 216 FSEFKRFLQIIEIALNERGIQFTTHYGKMDNDTRRKNLEYFRRDVSCKVLLATIKTAGVG 275

Query: 123 LNLQYGGNILVFFSLWW 139
           ++L    + +       
Sbjct: 276 IDL-RCAHKVYLMLEDQ 291


>gi|327409943|ref|YP_004347363.1| putative helicase [Lausannevirus]
 gi|326785117|gb|AEA07251.1| putative helicase [Lausannevirus]
          Length = 587

 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-------DPCTIQEWNEG 107
           KI+ ++ II+  NA  +I + H +S     +     G                I E+  G
Sbjct: 470 KIEHIQEIIKDENAHVLIFSSHESSFEGVERILNEMGIKFGMIKGHKSVRERVIAEFMTG 529

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           K+ ++  +      G++LQ   ++++           +  I R  + R ++ G    V V
Sbjct: 530 KLRVVLVNAKFNASGIDLQKANHVVLLH-------AMKDYIRRQAIGRAQRLGRNEPVLV 582

Query: 168 YYLI 171
           +  +
Sbjct: 583 HSFL 586


>gi|168004101|ref|XP_001754750.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
 gi|162693854|gb|EDQ80204.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
            patens]
          Length = 1128

 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 69   APIIVAYHFNSDLA-----------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               IV   F   +            +    +    +++K         +    +L     
Sbjct: 1003 CKAIVFSQFLEHINVIEEQLNGAGIQHVGIYSPMHSMNKMKSLATFRKDPGCTVLVM-DG 1061

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            +   GL+L +  ++ +   +W         +E   V+R  + G  R V V  L  + TI+
Sbjct: 1062 TAALGLDLSFVTHVYLMEPIWDG------SVEEQVVSRAHRMGATRPVLVETLAMRGTIE 1115

Query: 178  ELVLQRLR 185
            + +L+ L+
Sbjct: 1116 QQMLEYLQ 1123


>gi|118468269|ref|YP_885588.1| SNF2 domain-containing protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118169556|gb|ABK70452.1| SNF2 domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 663

 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 54  EKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK------AFPQGRTLDKDPCTIQEWN 105
            K+  L  +I +   N A ++V  HF   L  ++K        P   ++      +  + 
Sbjct: 501 AKLDRLIELISEAHINGARVVVLSHFPGVLETIRKALPGTVFGPLDESVPDRQAMLDAFA 560

Query: 106 EGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             + P  L A        L       + +         + Q   ER  + R ++      
Sbjct: 561 TARGPATLLAQLDVGPLDLRRLSMPLVAIVTEP-----QWQPRAERRMIGRTQRLSDLHT 615

Query: 165 VFVYYLIAQNTIDELVLQRL 184
           V V+ L+A+ +IDE + +  
Sbjct: 616 VRVHRLLARGSIDEPIRRLA 635


>gi|296163999|ref|ZP_06846624.1| helicase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900651|gb|EFG80032.1| helicase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 1750

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
            G + +L       G G+N+Q     L    + W   + +Q   RI     +       + 
Sbjct: 1329 GDVSVLIGSTEKIGAGVNVQARAAALHHVDVPWRPRDLEQREGRIQRQGNQNLDG---ID 1385

Query: 167  VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK-ETIHV 205
            ++  + + + D ++ Q+++ K+    L +  +++ E + +
Sbjct: 1386 IFIYVTEGSYDTVMWQKVQAKT----LFIEQMRRNEVLDI 1421


>gi|256960869|ref|ZP_05565040.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256951365|gb|EEU67997.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 2586

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++ +L    A  G G N+Q            W   + +Q
Sbjct: 2183 FIHDANTETQKAELFAKVRRGQVRVLIGSTAKMGAGTNVQNRIVASHDLDCPWRPADLEQ 2242

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R      RQ     +V ++  + + T D      +  K      ++ +
Sbjct: 2243 RAGR----SLRQGNMNASVKMFKYVTKGTFDAYNWGLVENKQKFIGQIMTS 2289


>gi|307267227|ref|ZP_07548731.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917751|gb|EFN48021.1| helicase domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 903

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 90  QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            G    K    I++  +     +     +   GLNLQ  G ++    L W+    +Q   
Sbjct: 734 NGIYERKSKEEIKQMVKRHELRILVGTDAASEGLNLQTLGTLIN-LDLPWNPTRLEQRKG 792

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS----TIQDLLLNALKKETIHV 205
           RI    Q        V++Y +  + ++++ V Q L  +      +   + + L+   +HV
Sbjct: 793 RIQRIGQV----YDKVYIYNMRYKGSVEDRVHQLLSQRLANIYDMFGQIPDVLEDVWVHV 848


>gi|326204934|ref|ZP_08194787.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
 gi|325984983|gb|EGD45826.1| SNF2-related protein [Clostridium papyrosolvens DSM 2782]
          Length = 1125

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           +EV   KI       E       +   +FN +            + ++    +  +    
Sbjct: 580 QEVIKGKIVVFTKYEETFTKYKEVFEVYFNQECCAFFNKKM---STEELELNVFRFQNDT 636

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
              +     S G G N Q   + ++   L WD    +Q I R+    +      ++V +Y
Sbjct: 637 SCFIMLCDESGGEGRNFQ-CADSVLHIDLPWDANAIEQRIGRLDRIGRDLNRDVKSVVIY 695

Query: 169 YLIAQNTIDELVLQ 182
                +TI+E + +
Sbjct: 696 ---THDTIEEQLFR 706


>gi|170042657|ref|XP_001849034.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
 gi|167866161|gb|EDS29544.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
          Length = 1527

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 19/161 (11%)

Query: 40   VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC 99
            + Y   +   E     ++      ++ + A    A      +    + +  G    +   
Sbjct: 1055 IVYCTRRDECERISGFLRTCFQDAQRESEAKEGAASKKRKRVNYTAEPYHAGMPSSRRRT 1114

Query: 100  TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
                +  G++ ++ A  A              ++ +++  + E + Q + R       + 
Sbjct: 1115 IQNAFMSGELRIVVATIAFGMGINK--SDIRAIIHYNMPRNFESYVQEVGR-----AGRD 1167

Query: 160  GFKRAVFVY------------YLIAQNTIDELVLQRLRTKS 188
            G      V+              I  N+ID  V+++L  K 
Sbjct: 1168 GKPSHCHVFLDNKGGDRNELRRHIYANSIDRHVIRKLLQKI 1208


>gi|237716188|ref|ZP_04546669.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262407797|ref|ZP_06084345.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|294644813|ref|ZP_06722556.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|229443835|gb|EEO49626.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           D1]
 gi|262354605|gb|EEZ03697.1| DNA methylase N-4/N-6 domain-containing protein [Bacteroides sp.
           2_1_22]
 gi|292639846|gb|EFF58121.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
          Length = 839

 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  ++    I ++  G++  L A P   G GLN QY  +  + F       +++   
Sbjct: 345 YGSQDDEEADKVIADFKNGRLKYLAAKPEMLGEGLNFQYHCHKAIMFI------DYRFND 398

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   + R  +   K  V +Y + A++  +  + +    K      +++ +
Sbjct: 399 KFQAIARIYRFMQKHPVDLYLVYAES--EGEIFKSFMQKWAQHREMVSKM 446


>gi|148825511|ref|YP_001290264.1| ATP-dependent helicase HepA [Haemophilus influenzae PittEE]
 gi|189029417|sp|A5UAT0|RAPA_HAEIE RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|148715671|gb|ABQ97881.1| ATP-dependent helicase HepA [Haemophilus influenzae PittEE]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|284504412|ref|YP_003407127.1| zinc finger protein [Marseillevirus]
 gi|282935850|gb|ADB04165.1| zinc finger protein [Marseillevirus]
          Length = 587

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
             + +H +E+     K    I+  ++            D +R+     +G+   K    I
Sbjct: 465 MTKMEHIEELVKNAEKKGMSILIFSSHEDTFRGLKNLLDTSRINYRMVKGQKSVK-EKII 523

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
             +  G+I +L  +      G++LQ   ++++  S+       ++ I+R  V R ++ G 
Sbjct: 524 AAYMAGEIRVLLMNATHNASGIDLQRTTDVVLMHSV-------EEHIKRQVVGRAQRLGR 576

Query: 162 KRAVFVYYLI 171
           K  V V+  +
Sbjct: 577 KGRVRVHTFV 586


>gi|328769991|gb|EGF80034.1| hypothetical protein BATDEDRAFT_25649 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1514

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 75   YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
              +         A+  G+T ++       +  G++ ++ A  A              ++ 
Sbjct: 1054 AQYLRVRDFDADAYHAGKTPEQREYVQSRFQHGRLRIIVATVAFGLGINK--QNVRSVIH 1111

Query: 135  FSLWWDLEEHQQMIERIGVTRQRQA-----GFKRAVFVYYLIAQNTIDEL-VLQRLR 185
            +S+   +E++ Q I R G   +          +  V     +  + +DE  + + L+
Sbjct: 1112 YSMPRSIEDYMQEIGRSGRNGEPAYCNLFLVQEDYVKHRSFVFSDGVDEAGIWRLLK 1168


>gi|301169332|emb|CBW28931.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Haemophilus influenzae
           10810]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|145635745|ref|ZP_01791439.1| ATP-dependent helicase HepA [Haemophilus influenzae PittAA]
 gi|145267009|gb|EDK07019.1| ATP-dependent helicase HepA [Haemophilus influenzae PittAA]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|269957121|ref|YP_003326910.1| helicase domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305802|gb|ACZ31352.1| helicase domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 1041

 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F +  A    A        +D      +N    P +    +    G++  +  + +V +
Sbjct: 839 PFQARFALRYGARFGDNADVRDGQVRAAFNSPFAPFVLVSTSVGQEGIDFHWWCHAVVHW 898

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           +L  +  + +Q   R+            AV
Sbjct: 899 NLPRNPVDFEQREGRVNRFAGHAIRRNVAV 928


>gi|330990113|ref|ZP_08314093.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
 gi|329762801|gb|EGG79265.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
          Length = 1696

 Score = 42.4 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +          + N G+  +L    A+ G G+N Q     L    + W + +  Q
Sbjct: 1327 FMQHYKKSAAKQRLFADLNSGRRRILIGSTATMGTGVNAQQRLKALHHLDVPWLVADIIQ 1386

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               RI      Q      + +Y    + ++D    Q L  K  
Sbjct: 1387 REGRIER----QGNQNDEIEIYAYAQKGSVDATNWQMLERKQR 1425


>gi|302892967|ref|XP_003045365.1| hypothetical protein NECHADRAFT_106221 [Nectria haematococca mpVI
            77-13-4]
 gi|256726290|gb|EEU39652.1| hypothetical protein NECHADRAFT_106221 [Nectria haematococca mpVI
            77-13-4]
          Length = 1446

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                   + +    IQ +N     +  L       G G+NL    +  +      +L   
Sbjct: 1188 HIRSAHPMAERVKAIQAFNNPNEDVGALITTFQLAGFGINLHGACHHGIIVEYPQNLSTI 1247

Query: 145  QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
               I R+      + G   +V    L  +N+ D   + R+  K
Sbjct: 1248 LHAIGRLW-----RLGQTNSVKPDILYQRNSFDAYQISRMAQK 1285


>gi|116753548|ref|YP_842666.1| Hef nuclease [Methanosaeta thermophila PT]
 gi|116664999|gb|ABK14026.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
          Length = 749

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              + +  +   +G +  K    ++++  G+  +L A  +    G+++    ++++F+  
Sbjct: 393 VRFVGQASRENDEGLSQRKQSEILEKFRAGEYNVLIAT-SVGEEGIDIPST-DMVLFYEP 450

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   Q   R G  R  +        V  LIA+ T DE        K       L  
Sbjct: 451 VPSEIRSIQRKGRTGRARTGR--------VVVLIAKGTRDEAYYWISDRKERTMRRQLQG 502

Query: 198 LKK 200
           + +
Sbjct: 503 MAE 505


>gi|296391314|ref|ZP_06880789.1| DEAD/DEAH box helicase [Pseudomonas aeruginosa PAb1]
          Length = 174

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 52  RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFLQTGYNVYTLQ-----QAARR 105

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K  V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 106 SWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTSGDVPESGLDSLNQDGDSV 163


>gi|255080480|ref|XP_002503820.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226519087|gb|ACO65078.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1445

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            D       F       +       + N+    +      + G G++    G++++F  L
Sbjct: 701 DDANLPYIRFDGSTPGQERDAGCDRFKNDDNCRVALVSVTAGGVGIDF-SRGSVVIFVEL 759

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              L    +        R  + G    V VYYL+A+   +    +RL +
Sbjct: 760 P--LAHLVE----QAEDRVHRQGVADPVTVYYLVARGAGEWHDRKRLES 802


>gi|224008246|ref|XP_002293082.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971208|gb|EED89543.1| Hypothetical protein THAPSDRAFT_263934 [Thalassiosira pseudonana
           CCMP1335]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 91  GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                     ++++     I L      + G GL L    + ++F  L W          
Sbjct: 339 SVPPADRALRVRKFQTNDSIRLAILSMTAAGVGLTLTA-ASSIIFTELHWVPGVL----- 392

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQN---TIDELVLQRLRTK 187
                R  + G   AV + Y I ++   ++D  +   L  K
Sbjct: 393 AQAEDRCHRIGQVNAVNIMYAICKDEDVSVDRSLWAMLGRK 433


>gi|115387363|ref|XP_001211187.1| hypothetical protein ATEG_02009 [Aspergillus terreus NIH2624]
 gi|114195271|gb|EAU36971.1| hypothetical protein ATEG_02009 [Aspergillus terreus NIH2624]
          Length = 1162

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 1/67 (1%)

Query: 97   DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
                     E    +L     + G GLNL    + +     WW      Q I+R+    Q
Sbjct: 1087 RKKASTSQTEPSPQVLLISLRAGGVGLNLTT-ASNVFMMDPWWSFAIEAQAIDRVHRMGQ 1145

Query: 157  RQAGFKR 163
             +    +
Sbjct: 1146 LRDIRSK 1152


>gi|16119916|ref|NP_396621.1| SNF2 family helicase [Agrobacterium tumefaciens str. C58]
 gi|15163586|gb|AAK91062.1| helicase, SNF2 family [Agrobacterium tumefaciens str. C58]
          Length = 1693

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    L          +   K     + +     G +  L     + 
Sbjct: 1312 EKTRGFSAYRWIRDELIRLGVPASQIAFMQDFKKSEAKQRLFGDVRAGSVRFLIGSSETM 1371

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI      Q      V ++    + ++D  
Sbjct: 1372 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSLDAT 1427

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1428 MWQNNERKARFIAAALSG 1445


>gi|254173751|ref|ZP_04880423.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
 gi|214032443|gb|EEB73273.1| Type III restriction enzyme, res subunit family [Thermococcus sp.
           AM4]
          Length = 807

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 35/218 (16%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           R     L+ +  ++     +  +  ++    V   E        ++  + +   ++K   
Sbjct: 313 RSYLKKLREDRSKSGRELMEDPRMRKVTYLLVQAKELGLDHPKMEKLKELIRKQLQKKPD 372

Query: 69  APIIVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           + IIV  ++                     + +  +   +G +  +    +  ++ G+  
Sbjct: 373 SKIIVFTNYRDTGKKIVEELQEMGISAERFIGQASRGRDRGMSQREQKEVLDRFSRGEFN 432

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  +    GL++    +++VF+                 + R+ + G  R   V  L
Sbjct: 433 VLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRS--------IQRRGRTGRHRPGKVVIL 482

Query: 171 IAQNTIDELVLQRLRTKST-IQDLL------LNALKKE 201
           +A+ T DE      R K   + + +      L +L++E
Sbjct: 483 MAKGTRDEAYYWSSRRKEKGMFEAIRKVARELESLERE 520


>gi|86359839|ref|YP_471730.1| DNA methylase [Rhizobium etli CFN 42]
 gi|86283941|gb|ABC93003.1| probable DNA methylase [Rhizobium etli CFN 42]
          Length = 1699

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
              +    AY +  D    L          +   K     + +     GKI  L     + 
Sbjct: 1313 EKSRGFSAYRWIRDELVRLGVPASEIAFMQDYKKTEAKQRLFADVRAGKIRFLIGSSDTM 1372

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI      Q      V ++    Q ++D  
Sbjct: 1373 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATQGSLDAS 1428

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1429 MWQNNERKARFIAAALSG 1446


>gi|319945388|ref|ZP_08019649.1| helicase domain protein [Lautropia mirabilis ATCC 51599]
 gi|319741381|gb|EFV93807.1| helicase domain protein [Lautropia mirabilis ATCC 51599]
          Length = 945

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    +    E +  +L         G+NLQ+    +V + L W+   H+Q   RI 
Sbjct: 521 TPEERRERVGSLEEAESRILV-TTDCLSEGINLQHLFTAVVHYDLTWNPTRHEQREGRID 579

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
              Q        V    L  ++  +D  VL  +  K+ 
Sbjct: 580 RFGQ----QAEEVRCTMLYGEDNPVDGFVLNVILRKAE 613


>gi|319775342|ref|YP_004137830.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3047]
 gi|317449933|emb|CBY86145.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3047]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|319897783|ref|YP_004135980.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3031]
 gi|317433289|emb|CBY81664.1| RNA polymerase-associated helicase protein [Haemophilus influenzae
           F3031]
          Length = 923

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|170291163|ref|YP_001737979.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175243|gb|ACB08296.1| type III restriction protein res subunit [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 492

 Score = 42.4 bits (98), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 27/185 (14%)

Query: 5   HKFQRELYCDLQGEN---IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
            +  REL+     +    IE   +     K  ++          +  +EV D K+     
Sbjct: 312 REMSRELFLARNDDERKLIEKKYALKAKNKIREV---------LRIMEEVKDRKVLIFTE 362

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I++A          +     R +     G+T        + +  G+I ++         
Sbjct: 363 YIDQAEEI-------YRELRKRYKVELMIGKTSG-RSEIFERFKRGEINVIVTTRVL--D 412

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
                   ++ +  S      +  Q + R+      +    +   VY ++ + TI+E + 
Sbjct: 413 EGIDVPDADVAIIVSGSGSRRQMAQRVGRV-----VRGAPGKVADVYEIVTRGTIEEKLS 467

Query: 182 QRLRT 186
           +  R 
Sbjct: 468 RVRRR 472


>gi|328722411|ref|XP_001942510.2| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 577

 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            I  L    +    GLNL      + F     +  +     E   +    + G  +  FV
Sbjct: 484 NINALLVKLSVGSKGLNLTE-ATRIFFMDPIINKAD-----EHQAIGTIHRLGQTKPTFV 537

Query: 168 YYLIAQNTIDELV 180
           +  I +++I+E +
Sbjct: 538 HNFIIRDSIEENI 550


>gi|309972648|gb|ADO95849.1| ATP-dependent helicase HepA [Haemophilus influenzae R2846]
          Length = 923

 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|240103224|ref|YP_002959533.1| Hef nuclease [Thermococcus gammatolerans EJ3]
 gi|239910778|gb|ACS33669.1| Hef, Helicase-associated endonuclease for fork-structured DNA (Hef)
           [Thermococcus gammatolerans EJ3]
          Length = 801

 Score = 42.0 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 77/214 (35%), Gaps = 39/214 (18%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA-- 66
           R     L+ +  ++     +  +  ++    +Y   +     +   K++ L+ +I+K   
Sbjct: 299 RNYLKKLREDRSKSSRELMEDPRMRKV----IYLLVQAKELGLDHPKMEKLKDLIKKQLE 354

Query: 67  --NAAPIIVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWNE 106
               + IIV  ++                     + +  +   +G +  +    +  ++ 
Sbjct: 355 RKPDSKIIVFTNYRDTGKKIVEELRNLGVSAERFIGQASRGTDRGMSQKEQKEVLDRFSR 414

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G+  +L A  +    GL++    +++VF+                 + R+ + G  R   
Sbjct: 415 GEFNVLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRS--------IQRRGRTGRHRPGK 464

Query: 167 VYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           V  L+A+ T DE      R K      + +A+K+
Sbjct: 465 VVILMAKGTRDEAYYWSSRRKEK---GMFDAIKR 495


>gi|158421530|ref|YP_001527757.1| helicase domain-containing protein [Deinococcus geothermalis DSM
           11300]
 gi|158342773|gb|ABW35059.1| helicase C-domain related protein [Deinococcus geothermalis DSM
           11300]
          Length = 678

 Score = 42.0 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                 +           G+  ++  +  + G G+NLQ+G   L+   + W+    QQ +
Sbjct: 230 QTCPESEDRLRVSNGLKSGQYQVVIGNTGTMGQGINLQHGVANLLHLDVPWNPAVWQQRV 289

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            R+      +       F   L  +  +D+ +   LR K
Sbjct: 290 GRVVRQGNTEKHINNKTF---LGTRG-LDKDMYDTLRGK 324


>gi|329122661|ref|ZP_08251240.1| RNA polymerase-associated protein RapA [Haemophilus aegyptius ATCC
           11116]
 gi|327472675|gb|EGF18104.1| RNA polymerase-associated protein RapA [Haemophilus aegyptius ATCC
           11116]
          Length = 923

 Score = 42.0 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|224072879|ref|XP_002303924.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222841356|gb|EEE78903.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1333

 Score = 42.0 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 44   EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
            ++     V    ++     + +A    +I+   F   +  +++                 
Sbjct: 1140 DKDTQISVSSLVLQQDCFSVNRAAMEKVIIFSQFLEHIHVIEQQLAFAGIKFAGMYSPMP 1199

Query: 94   LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  ++  +      +      S   GL+L +  ++ +   +W       + +E   +
Sbjct: 1200 QINKMKSLATFQHDATCMALLMDGSAALGLDLSFVTHVFLMEPIWD------RSMEEQVI 1253

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            +R  + G  R + V  L  + TI+E +L+ L+ 
Sbjct: 1254 SRAHRMGATRPINVETLAMRGTIEEQMLEFLQD 1286


>gi|66358816|ref|XP_626586.1| DEXDc+HELICc'DEXDc+HELICc' [Cryptosporidium parvum Iowa II]
 gi|46227709|gb|EAK88629.1| DEXDc+HELICc'DEXDc+HELICc' [Cryptosporidium parvum Iowa II]
          Length = 1476

 Score = 42.0 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 31   KCLQLANGAVYYDEEKHWKE---VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
            K   +    +  D E++ K    +     + L+ +         I    +   + + +  
Sbjct: 1219 KLRYIL-HCILKDIEENPKIKIMIVSSLWQQLDFLYYTLTILFNIGTCRYYPHIPKSELQ 1277

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                     D   IQE N    P+L        HGL+L    + +       D     Q 
Sbjct: 1278 RSISNFKKDDSNNIQEINNKF-PVLLLSIDIGSHGLDL-SCVSNIYILDPISDESIENQT 1335

Query: 148  IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQD 192
            I R    R         V V Y + Q+T ++++   ++ K  I  
Sbjct: 1336 ISRAYRIRSNNITSSSFVKVKYCLIQDTFEDILYDYIQYKRFIFQ 1380


>gi|319935365|ref|ZP_08009803.1| helicase domain-containing protein [Coprobacillus sp. 29_1]
 gi|319809773|gb|EFW06174.1| helicase domain-containing protein [Coprobacillus sp. 29_1]
          Length = 3184

 Score = 42.0 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +T  +      +  +GK+ ++    +  G G N+Q     L      W   + +Q
Sbjct: 2814 HIHIAKTEKQKQDLFSKVRQGKVRVINGSTSKMGAGTNIQDRLVALHDLDCPWRPRDLEQ 2873

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q        +Y  + + T D  + Q +  K T    +  +
Sbjct: 2874 RHGRIAR----QGNLNSEASIYTYVTEGTFDSYLYQTIEKKQTFISQVFTS 2920


>gi|323526321|ref|YP_004228474.1| SNF2-like protein [Burkholderia sp. CCGE1001]
 gi|323383323|gb|ADX55414.1| SNF2-related protein [Burkholderia sp. CCGE1001]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + +K    + +  E    ++  +P     GL+L      + F    +++   Q     
Sbjct: 641 SVSAEKREDWVADQLERGADVIITNPELVKTGLDLLEF-PTIAFLQSGYNVYTLQ----- 694

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
               R  + G    V V +L  + T     L+ +  K  +       + +  + +
Sbjct: 695 QAARRSWRIGQTLDVTVRFLGYEGTAQMRCLKLMAQKIAVSQSTSGDMPESGLDI 749


>gi|222108974|ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
 gi|221727896|gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
          Length = 1693

 Score = 42.0 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    L          +   K     + +     GK+  L     + 
Sbjct: 1312 EKTRGFSAYRWIRDELIRLGVPASEIAFMQDFKKSEAKQRLFGDVRAGKVRFLIGSSETM 1371

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI      Q      V ++    + ++D  
Sbjct: 1372 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSLDAT 1427

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1428 MWQNNERKARFIAAALSG 1445


>gi|172055090|ref|YP_001806417.1| hypothetical protein cce_5005 [Cyanothece sp. ATCC 51142]
 gi|171701371|gb|ACB54351.1| hypothetical protein cce_5005 [Cyanothece sp. ATCC 51142]
          Length = 961

 Score = 42.0 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + D+    + E       +L A       G+NLQ   N      L ++    +Q   RI 
Sbjct: 547 SEDEREIRLDELKSYSQRVLVAT-DCLSEGINLQEHFNACCHVDLPFNPNRLEQREGRID 605

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTK 187
              Q        V    L  Q+  +D  +LQ L  K
Sbjct: 606 RYGQANP----DVKCILLYGQDNPVDGAILQVLLRK 637


>gi|16272558|ref|NP_438774.1| ATP-dependent helicase HepA [Haemophilus influenzae Rd KW20]
 gi|260581430|ref|ZP_05849243.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           RdAW]
 gi|260583227|ref|ZP_05851005.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           NT127]
 gi|1170244|sp|P44781|RAPA_HAEIN RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|1573610|gb|AAC22275.1| ATP-dependent helicase (hepA) [Haemophilus influenzae Rd KW20]
 gi|260091924|gb|EEW75874.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           RdAW]
 gi|260093729|gb|EEW77639.1| RNA polymerase-associated protein rapA [Haemophilus influenzae
           NT127]
          Length = 923

 Score = 42.0 bits (97), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRNEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V VY   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQVYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|254524289|ref|ZP_05136344.1| ATP-dependent helicase HepA [Stenotrophomonas sp. SKA14]
 gi|219721880|gb|EED40405.1| ATP-dependent helicase HepA [Stenotrophomonas sp. SKA14]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGR-TLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
            +       VA H  +   R       G  T ++    +    + +  +L A       G
Sbjct: 482 CRYIGTAHYVAEHLKATFPRATVDAVTGELTPEERRERVDGLEDAEQRILVAT-DCLSEG 540

Query: 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVL 181
           +NLQ+    +V + L W+   H+Q   R+    Q        V    L  Q+  +D  VL
Sbjct: 541 INLQHLFTAVVHYDLAWNPTRHEQREGRVDRFGQ----QADEVRCTMLYGQDNPVDGFVL 596

Query: 182 QRLRTK 187
             +  K
Sbjct: 597 NVILKK 602


>gi|330962838|gb|EGH63098.1| SNF2-related:helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 70

 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               R  + G  R V V   +A +TID+ + Q L  K  +   L++   +E
Sbjct: 10  QAEDRAYRNGQLRLVVVKIPLADDTIDQQLWQMLMDKRALASDLIDPEAEE 60


>gi|224122872|ref|XP_002318937.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222857313|gb|EEE94860.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 2283

 Score = 42.0 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 57/202 (28%), Gaps = 42/202 (20%)

Query: 29   TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHF---------- 77
             + C +  +     +         D K   +  I I+ +    ++    F          
Sbjct: 844  LISCRKCCDHPYIMNPSLQISLTKDRKEADILDIGIKASGKLQLLGEMLFSIKERGLRAL 903

Query: 78   -----------------------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGK--IPLL 112
                                           +   +     +    ++ +N  +    + 
Sbjct: 904  VLFQSSGGSGKDNIGDILDDFVRQRFGQGSYERVDEHVLPSRKQSALKFFNNHQEGRFVF 963

Query: 113  FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                 +C   + L    + ++ F+  W+     + +++I +           + ++ L +
Sbjct: 964  LLETRACSSSIKL-SSVDTVIIFASDWNPMTDIRSLQKITLH-----SQFDQINIFRLYS 1017

Query: 173  QNTIDELVLQRLRTKSTIQDLL 194
              T++E VL   R   T++  L
Sbjct: 1018 SCTVEEKVLIIARQDKTLESSL 1039


>gi|282900077|ref|ZP_06308034.1| hypothetical protein CRC_01468 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194959|gb|EFA69899.1| hypothetical protein CRC_01468 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 964

 Score = 42.0 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
           ++ D+    + E       +L A       G+NLQ   + ++ + L W+    +Q   RI
Sbjct: 533 QSEDEREVRLNELKSYPQRILVAT-DCLSEGINLQSHFSAVIHYDLPWNPNRLEQREGRI 591

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
               Q  A   ++  +Y     N +D  VL+ L  K+      L 
Sbjct: 592 DRYGQI-ATQVKSCLLY--GQDNPVDGAVLEVLIRKAVQIHKTLG 633


>gi|190344637|gb|EDK36353.2| hypothetical protein PGUG_00451 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1002

 Score = 42.0 bits (97), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +++E+ +    I     +  +   GL L      +       +     Q I RI     
Sbjct: 840 DSVEEFKDPSNNITCFLLNAKAQASGLTL-INATHIFLCEPLVNASLELQAISRI----- 893

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + G  +   V+    +NT++E +L     K 
Sbjct: 894 HRIGQTKVTTVWLFAIENTVEESILLMSTNKR 925


>gi|327309686|ref|XP_003239534.1| hypothetical protein TERG_01519 [Trichophyton rubrum CBS 118892]
 gi|326459790|gb|EGD85243.1| hypothetical protein TERG_01519 [Trichophyton rubrum CBS 118892]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 92  RTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            ++ +    +Q +      +  L         GLNLQ     +V FS             
Sbjct: 140 PSVSEREHLVQAFTTDPERVMVLVCSYNVSSTGLNLQKLCRNVVIFSPPTSKASQD---- 195

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNT 175
              + R ++ G    V VY +  +++
Sbjct: 196 -QAIGRVKRLGQTHVVHVYEIRVRDS 220


>gi|116074313|ref|ZP_01471575.1| hypothetical protein RS9916_37722 [Synechococcus sp. RS9916]
 gi|116069618|gb|EAU75370.1| hypothetical protein RS9916_37722 [Synechococcus sp. RS9916]
          Length = 516

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 29/167 (17%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +  RE       E      + +      ++                 + K+   E ++
Sbjct: 323 YRQRVREGLVRSDAE------AFAVLTALRRI---------------GAEFKLPEAEQLL 361

Query: 64  E--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-----DPCTIQEWNEGKIPLLFAHP 116
           +  +A    +++   F   L  LQ+         +         +  +  G   LLFA  
Sbjct: 362 QSLRAQQQSVVLFSGFVGPLELLQQRIGGELLTGRLKPGERQAVVDRFQAGDNDLLFATY 421

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
            + G G  L      +V     W   +  Q  +R             
Sbjct: 422 GAGGLGFTLHR-ARQVVLLERPWTPGDVDQAEDRCHRLGMDGGLTSH 467


>gi|26351187|dbj|BAC39230.1| unnamed protein product [Mus musculus]
 gi|26351189|dbj|BAC39231.1| unnamed protein product [Mus musculus]
          Length = 577

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 46/199 (23%), Gaps = 50/199 (25%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------------------- 41
           + Y KF       ++   +E  +  ++     +L +                        
Sbjct: 380 EIYRKFV--SLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQD 437

Query: 42  -------------YDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK 86
                                     K+  L  ++E  +      +V       L  +++
Sbjct: 438 ENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIER 497

Query: 87  AFPQGRTL------------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134
                               +++          +  +        G GL L      +V 
Sbjct: 498 LLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTA-ATRVVI 556

Query: 135 FSLWWDLEEHQQMIERIGV 153
           F   W+     Q ++R+  
Sbjct: 557 FDPSWNPATDAQAVDRVYR 575


>gi|14600689|ref|NP_147209.1| hypothetical protein APE_0413 [Aeropyrum pernix K1]
 gi|5104053|dbj|BAA79369.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 1039

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I+ W       +       G GLNLQY  N+++ + + W     +Q I R+      +
Sbjct: 498 EDIKRWLSEDGRRVLVTTDVAGEGLNLQY-ANVIINYEITWSPIRLEQRIGRVW-----R 551

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            G  +  +V+ L   + +++ V + +  K 
Sbjct: 552 YGQDKTTYVFNLFLADGLEKEVAETVFAKL 581


>gi|119384266|ref|YP_915322.1| helicase domain-containing protein [Paracoccus denitrificans
           PD1222]
 gi|119374033|gb|ABL69626.1| helicase domain protein [Paracoccus denitrificans PD1222]
          Length = 923

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A       G+NLQ   + ++ + L W+   HQQ   R+    Q        V    
Sbjct: 518 RILVAT-DCLSEGINLQQLFDTVIHYDLSWNPTRHQQREGRVDRFGQPAEL----VRSIM 572

Query: 170 LIAQNT-IDELVLQRLRTKST 189
           + + ++ ID  VL  +  K+ 
Sbjct: 573 MFSPDSAIDGAVLDVILRKAE 593


>gi|145628405|ref|ZP_01784206.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.1-21]
 gi|144980180|gb|EDJ89839.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.1-21]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 168 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 227

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 228 KLHRDEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 287

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 288 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYMPC 341

Query: 172 AQNT 175
           A+++
Sbjct: 342 AKDS 345


>gi|331251718|ref|XP_003338449.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309317439|gb|EFP94030.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 78

 Score = 42.0 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                +E   + R  + G +  V V      N+I+  + Q  R K+ + 
Sbjct: 4   TWNPAVEEQAIDRLYRIGQQEKVHVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|92109757|ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
 gi|91802839|gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
          Length = 1700

 Score = 42.0 bits (97), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 16/200 (8%)

Query: 10   ELYCDLQGENIEAFNSASKTV----KCLQLANGAVYYDEEKHWKEVHDEKIKALEVI-IE 64
            +L      E+ E  N  +  +    +  Q   G  Y   +    E+          +   
Sbjct: 1253 DLRLVDADEDSEPHNKLNNLISNAIRIWQETAGNAYIRSDGKPFELPGAAQMIFSDLGTI 1312

Query: 65   KANAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPA 117
                +    AY +  D    +          +   K     + +     GK+  L     
Sbjct: 1313 SVEKSRGFSAYRWIRDELVRMGVPASEIAFMQDYRKSEAKQRLFGDVRAGKVRFLIGSSD 1372

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
            + G G+N Q     L    + W   + +Q   RI      Q      V ++    + ++D
Sbjct: 1373 TMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEVDIFAYATEGSLD 1428

Query: 178  ELVLQRLRTKSTIQDLLLNA 197
              + Q    K+      L+ 
Sbjct: 1429 ATMWQNNERKARFITAALSG 1448


>gi|308455330|ref|XP_003090212.1| hypothetical protein CRE_04419 [Caenorhabditis remanei]
 gi|308265843|gb|EFP09796.1| hypothetical protein CRE_04419 [Caenorhabditis remanei]
          Length = 1666

 Score = 41.7 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +       + +L    + C +GLN+  G N ++F           Q I RI      
Sbjct: 1559 KKIVDFEVSEDVKILLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRI-----N 1612

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + G KRA+ V +L+ + ++D  + +  + 
Sbjct: 1613 RFGQKRAMRVIHLVVEGSLDSELREIAKN 1641


>gi|321257181|ref|XP_003193498.1| hypothetical protein CGB_D3680W [Cryptococcus gattii WM276]
 gi|317459968|gb|ADV21711.1| hypothetical protein CNBD4850 [Cryptococcus gattii WM276]
          Length = 1656

 Score = 41.7 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 18/184 (9%)

Query: 10   ELYCDLQGENIEAFNSASKTVKCLQL----ANGAVYYDEEKHWKEVHDEKIKALEVIIEK 65
            E   D+  E  E    A    K   +        +  D    +    +  IK L      
Sbjct: 1428 EAEEDITPEEQEQMRRAEDLEKLRMMDVERRRAVMMMDMMGEYGSKINFLIKHLLYYKST 1487

Query: 66   ANAAPIIVAYHF-------NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPA 117
                  ++  ++          L     +F       K    + ++  +  I +   H  
Sbjct: 1488 EPDTRHVIFSNWSDSLNIVMQALRLNGISFASFDQGKKQKDVVDQFLKDESISVFLLHAE 1547

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                GL L     ++            +   E   + R  + G ++   V+     +T++
Sbjct: 1548 RESSGLTLTS-CRVVHLLEP-----VLRHSFELQAIGRVDRLGQEKETSVFCYATMDTVE 1601

Query: 178  ELVL 181
              +L
Sbjct: 1602 SRIL 1605


>gi|308469313|ref|XP_003096895.1| hypothetical protein CRE_24695 [Caenorhabditis remanei]
 gi|308241310|gb|EFO85262.1| hypothetical protein CRE_24695 [Caenorhabditis remanei]
          Length = 1658

 Score = 41.7 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +       + +L    + C +GLN+  G N ++F           Q I RI      
Sbjct: 1551 KKIVDFEVSEDVKILLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRI-----N 1604

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + G KRA+ V +L+ + ++D  + +  + 
Sbjct: 1605 RFGQKRAMRVIHLVVEGSLDSELREIAKN 1633


>gi|256079746|ref|XP_002576146.1| snf2 histone linker phd ring helicase [Schistosoma mansoni]
 gi|238661407|emb|CAZ32381.1| snf2 histone linker phd ring helicase, putative [Schistosoma mansoni]
          Length = 1587

 Score = 41.7 bits (96), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 111  LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
            +L        +GLNL    N ++F           Q + RI      + G  R   V+  
Sbjct: 1446 ILLMPVQLGANGLNLTS-ANHVLFVDPVLSHAREAQAVARI-----HRIGQTRPGVVHRF 1499

Query: 171  IAQNTID 177
            + +++I+
Sbjct: 1500 LVKDSIE 1506


>gi|58039939|ref|YP_191903.1| ATP-dependent helicase HepA [Gluconobacter oxydans 621H]
 gi|58002353|gb|AAW61247.1| ATP-dependent helicase HepA [Gluconobacter oxydans 621H]
          Length = 926

 Score = 41.7 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            D+    I          +         G+NLQ   + +V + L W+   HQQ   R+  
Sbjct: 501 RDRVSDMIAADETQSNQRILVATDCLSEGINLQQLFDTVVHYDLSWNPTRHQQREGRVDR 560

Query: 154 TRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
             Q        V    + + ++ +D  VL  +  K+ 
Sbjct: 561 FGQPAEL----VRSIMMFSPDSAVDGAVLDVILRKAE 593


>gi|293602264|ref|ZP_06684712.1| toprim domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292819343|gb|EFF78376.1| toprim domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 758

 Score = 41.7 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           +K    + E  +  I  L  +P     GL++      ++F    +++   Q         
Sbjct: 636 EKREDWVMEQVDRGIDALICNPELVKTGLDMLEF-PTILFMQTGYNVYTLQ-----QAAR 689

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R  + G  R V V +L  Q T     LQ +  K  +       +    + +
Sbjct: 690 RSWRIGQTRDVDVDFLGYQGTAQMRCLQLMAQKIAVSQSTSGDMPDSGLDI 740


>gi|254297090|ref|ZP_04964543.1| ATP-dependent helicase HepA [Burkholderia pseudomallei 406e]
 gi|157807896|gb|EDO85066.1| ATP-dependent helicase HepA [Burkholderia pseudomallei 406e]
          Length = 931

 Score = 41.7 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              ++    +      +  LL A       G+NLQ   + +V + L W+   H+Q   R+
Sbjct: 502 FPAEERERRVDALGTSERRLLIAT-DCLSEGVNLQEHFDSVVHYDLSWNPTRHEQREGRV 560

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               Q      RA  +Y   A N +D  VLQ +  K+ 
Sbjct: 561 DRFGQP-CPRVRATLIY--GANNPVDGAVLQVILRKAE 595


>gi|18978387|ref|NP_579744.1| Hef nuclease [Pyrococcus furiosus DSM 3638]
 gi|18894225|gb|AAL82139.1| ATP-dependent RNA helicase, putative [Pyrococcus furiosus DSM 3638]
          Length = 764

 Score = 41.7 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 32/215 (14%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           ++LY + +  + +A        +  +  +  V   E        D+  + +   +++   
Sbjct: 303 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 362

Query: 69  APIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           + IIV  ++                     + +  K   +G +  +    + E+  G+  
Sbjct: 363 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 422

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  +    GL++    +++VF+                 + R+ + G      V  L
Sbjct: 423 VLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRS--------IQRRGRTGRHMPGRVIIL 472

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLL----NALKKE 201
           +A+ T DE      R K  I    +     A+KK+
Sbjct: 473 MAKGTRDEAYYWSSRQKEKIMQETIAKVSQAIKKQ 507


>gi|146422266|ref|XP_001487074.1| hypothetical protein PGUG_00451 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1002

 Score = 41.7 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 99  CTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +++E+ +    I     +  +   GL L      +       +     Q I RI     
Sbjct: 840 DSVEEFKDPSNNITCFLLNAKAQASGLTL-INATHIFLCEPLVNASLELQAISRI----- 893

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            + G  +   V+    +NT++E +L     K 
Sbjct: 894 HRIGQTKVTTVWLFAIENTVEESILLMSTNKR 925


>gi|157127702|ref|XP_001661140.1| rothmund-thomson syndrome DNA helicase recq4 [Aedes aegypti]
 gi|108872839|gb|EAT37064.1| rothmund-thomson syndrome DNA helicase recq4 [Aedes aegypti]
          Length = 1134

 Score = 41.7 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L    + +  G +  +       +  G++ ++ A  A              ++ +++  +
Sbjct: 696 LNYFAEPYHAGLSSARRRTIQNAFMSGELRIVVATIAFGMGINK--ADIRAIIHYNMPKN 753

Query: 141 LEEHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            E + Q + R G                K    +   I  N+ID  V+++L  K 
Sbjct: 754 FESYVQEVGRAGRDGGVSHCHLFLDNRGKDRNELRRHIYANSIDRHVIRKLLQKI 808


>gi|331250653|ref|XP_003337933.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309316923|gb|EFP93514.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 78

 Score = 41.7 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                +E   + R  + G +  V V      N+I+  + Q  R K+ + 
Sbjct: 4   TWNPAVEEQAIDRLYRIGQQEKVHVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|148238375|ref|YP_001223762.1| SNF2 family DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147846914|emb|CAK22465.1| Superfamily II DNA/RNA helicases, SNF2 family [Synechococcus sp. WH
           7803]
          Length = 502

 Score = 41.7 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 55  KIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQG-----RTLDKDPCTIQEWNEG 107
           K+ A E ++++  A    +++   F + L  LQ+          +  ++    + ++  G
Sbjct: 339 KLPAAERLVQQLRAQGESVVLFSSFVAPLVLLQQRLGGALLTGRQKPEERQTAVDQFQAG 398

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              LL A   + G G  L      +V     W   +           R  + G    +  
Sbjct: 399 STDLLLATYGAGGLGFTLHR-ARQVVLLERPWTPGDVD-----QAEDRCHRLGMDGELVS 452

Query: 168 YYLIAQNTIDELVLQRLRTKSTIQDLLLN----ALKKETI 203
           ++L      D+LV   + +K++  +LL+     +++++++
Sbjct: 453 HWLQL-GPADQLVDGLVASKASRIELLMGPRRVSVERQSL 491


>gi|145640056|ref|ZP_01795652.1| ATP-dependent helicase HepA [Haemophilus influenzae PittII]
 gi|145270840|gb|EDK10761.1| ATP-dependent helicase HepA [Haemophilus influenzae PittII]
 gi|309751620|gb|ADO81604.1| ATP-dependent helicase HepA [Haemophilus influenzae R2866]
          Length = 923

 Score = 41.7 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRNEKIFVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFAANLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|242765200|ref|XP_002340926.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724122|gb|EED23539.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2138

 Score = 41.7 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--WDLEEHQQMIERIG 152
                   +        +      +           N ++FF+ +   +  E+Q  I    
Sbjct: 2011 HGRGKMKKFSANHDKKVAILQLGTENAAGLNLQNANHVIFFAPFAAKNHYEYQSTIA-QS 2069

Query: 153  VTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              R  + G K+ V ++ L   NT++  +LQ
Sbjct: 2070 SGRVIRFGQKKKVHIWNLATLNTLEVGILQ 2099


>gi|24461733|gb|AAN62302.1|AF440524_89 conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
          Length = 757

 Score = 41.7 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 635 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K AV V YL    T     L  +  K  +       + +  + V
Sbjct: 689 SWRIGQKLAVRVIYLGYAATSQMTCLALMARKIMVSQSTSGDVPESGLDV 738


>gi|257466249|ref|ZP_05630560.1| helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 2324

 Score = 41.7 bits (96), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     +    + W   + +Q
Sbjct: 2228 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQ 2287

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               RI      Q    + V +Y  + +NT D
Sbjct: 2288 RSGRIVR----QGNENKEVSIYRYVTENTFD 2314


>gi|315917407|ref|ZP_07913647.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691282|gb|EFS28117.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 2332

 Score = 41.7 bits (96), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  +  +      +  +G++ +L       G G N+Q     +    + W   + +Q
Sbjct: 2236 FIHEANSDKQKDELFAKVRKGEVRILMGSTQKMGAGTNVQNKLIAMHDLDVPWRPADLEQ 2295

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               RI      Q    + V +Y  + +NT D
Sbjct: 2296 RSGRIVR----QGNENKEVSIYRYVTENTFD 2322


>gi|163855630|ref|YP_001629928.1| hypothetical protein Bpet1323 [Bordetella petrii DSM 12804]
 gi|163259358|emb|CAP41658.1| conserved plasmid related protein [Bordetella petrii]
          Length = 757

 Score = 41.7 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S W                R
Sbjct: 635 RREDWIAEQLDRGIDVLLTNPELVKTGLDLLEFPTIVFMQSGWNVYTLQ------QAARR 688

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K AV V YL    T     L  +  K  +   
Sbjct: 689 SWRIGQKLAVKVIYLGYAATSQMTCLSLMAKKILVSQS 726


>gi|266625815|ref|ZP_06118750.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
 gi|288862282|gb|EFC94580.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
          Length = 490

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L    A  G G N+Q     L      W   +  Q
Sbjct: 406 FIHEANTEVRKKELFSKVRTGQVRVLLGSTAKMGAGTNVQDRLVALHDLDCPWRPGDLAQ 465

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              RI      Q      V VY  + + T
Sbjct: 466 RKGRIER----QGNQNPLVHVYRYVTEGT 490


>gi|227500536|ref|ZP_03930590.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
 gi|227217364|gb|EEI82693.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
          Length = 2089

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKRKDELFSKVRRGEIRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               RI      Q      V ++  + +NT D
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFD 2088


>gi|119714090|ref|YP_919232.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525999|gb|ABL79369.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 724

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 19/157 (12%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
              A +   + +  L                 +  E    ++ +        ++    + 
Sbjct: 168 ESRADSRLDRLIGFLDAVCRPDGKSWSNERVVIFTEYAHTVDWL------TRVLRQRGYV 221

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVF 134
            D              +       ++        + +L A   + G G++LQ   + LV 
Sbjct: 222 EDR---LAVIQGSTKPEDREYIRSQFTADPAKELVRVLLAT-DAAGEGIDLQTHCHRLVN 277

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           F + ++    +Q I RI      + G      V++ +
Sbjct: 278 FDIPFNPSRLEQRIGRID-----RYGQTDEPQVFHFV 309


>gi|260801152|ref|XP_002595460.1| hypothetical protein BRAFLDRAFT_69293 [Branchiostoma floridae]
 gi|229280706|gb|EEN51472.1| hypothetical protein BRAFLDRAFT_69293 [Branchiostoma floridae]
          Length = 650

 Score = 41.3 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 15/120 (12%)

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLAR------------LQKAFPQGRTLDKDP 98
             K   L  ++E  K      +V       L              ++      +  D+D 
Sbjct: 30  SGKTCVLVELLERLKEEGHQTLVFSQSRKMLDIIQKILKSRGFKVMRIDGTITKLEDRDK 89

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +  ++    +        G GLNL    + +V +   W+     Q ++R    +  +
Sbjct: 90  RIRRFQSDPSWSVFLLTTQVGGVGLNLTA-ADRVVIYDPSWNPATDAQAVDRYFSRQDLR 148


>gi|323441317|gb|EGA98982.1| phage helicase [Staphylococcus aureus O46]
          Length = 301

 Score = 41.3 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 2   KQYHKFQRELYCD-LQGENIEAFNSASKTVKCLQLANGAVYYDE 44
           K Y + ++    +  +   + A N AS + K LQL+NGAVY D+
Sbjct: 254 KLYDELEKHYILESEEDGTVVAQNGASLSQKLLQLSNGAVYTDD 297


>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 41.3 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 46  KHWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW 104
           K    +  +    ++ I+ K N   P +    F    +       +G T  +    I ++
Sbjct: 408 KSRVMIFSQYRDNVDEIVTKLNQHHPFLRVMSFIGQSSSKSGKKGKGFTQKEQLEVISKF 467

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
             G   +L    +    GL++     I+  +          Q + R G  RQ +      
Sbjct: 468 QSGNYNVLV-STSIGEEGLDIGDVDLIVC-YDAQTSPVRMLQRMGRTGRKRQGR------ 519

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
             +  ++++   +E+  +      +IQ  +++   K  
Sbjct: 520 --IVVILSKGKEEEIHRKAQAQYKSIQRAIMDGQGKRI 555


>gi|110637870|ref|YP_678077.1| SNF2 family helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280551|gb|ABG58737.1| helicase, SNF2 family [Cytophaga hutchinsonii ATCC 33406]
          Length = 1379

 Score = 41.3 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 7/139 (5%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
               ++  +EK           +N       +      +  +     + + +G + ++   
Sbjct: 953  FAFIKEYLEKETGYKK--GVKWNRIALDEVEIITSEMSQARKENIKEAFLDGAVKIIIGT 1010

Query: 116  PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
             A+   G++LQ  G ++      W+  + +Q+  RI      + G+ R+V     + Q++
Sbjct: 1011 -ATIREGIDLQRKGTVIYNCYPDWNPTDIRQLEGRIWRQG-NEFGYIRSVM---PLVQDS 1065

Query: 176  IDELVLQRLRTKSTIQDLL 194
            +D  V Q+L  K++  + +
Sbjct: 1066 MDVFVFQKLEEKTSRINDI 1084


>gi|331234511|ref|XP_003329915.1| Snf2 family protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309308905|gb|EFP85496.1| Snf2 family protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 76

 Score = 41.3 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                E   V R  + G    V VY    + ++   + Q  + K  + 
Sbjct: 5   WNPAAEIQAVDRLYRLGQVNPVHVYQYYVRGSLKMNIYQVQKRKGKLA 52


>gi|330933137|ref|XP_003304061.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
 gi|311319572|gb|EFQ87831.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
          Length = 2131

 Score = 41.3 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 12/129 (9%)

Query: 78   NSDLARLQKAFPQGRTLDKD---PCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGG 129
               L R+        +  ++      I+E+           LL                 
Sbjct: 1935 MRVLERVLDHHEIRYSSTRETGAAQVIEEFKTNKEPATMKKLLILDVGDESAAGINLVNA 1994

Query: 130  NILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            N ++F S  +  +++  +      + R R+ G  + V++Y+++A  TID  +L+  R K 
Sbjct: 1995 NHVIFVSPLYTEKQYKYESSMAQAIARSRRHGQDKRVYIYHVVALRTIDVDILE-QRHKR 2053

Query: 189  TIQDLLLNA 197
               + +++A
Sbjct: 2054 --CEAMISA 2060


>gi|269839666|ref|YP_003324358.1| helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269791396|gb|ACZ43536.1| helicase domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 950

 Score = 41.3 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 53  DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------------GRTL 94
           D K+  L   + +   +    IV  +F      L++                      + 
Sbjct: 471 DAKLACLADTLRELLRDGFQPIVFCYFIHTANYLKEHLEPLLRGEFEDLQVEAVTGELSE 530

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    I +  +    +L A       G+NLQ   + +V + L W+    +Q   R+   
Sbjct: 531 DQRKERIAQLAQAPRRVLVAT-DCLSEGINLQDHFDAVVHYDLPWNPNRLEQREGRVDRF 589

Query: 155 RQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTK 187
            Q++      V    +  +N  +D  V++ L  K
Sbjct: 590 GQQRD----EVRAVTISGENNPVDLTVMRVLVRK 619


>gi|150866404|ref|XP_001385990.2| hypothetical protein PICST_36839 [Scheffersomyces stipitis CBS 6054]
 gi|149387660|gb|ABN67961.2| hypothetical protein PICST_36839 [Scheffersomyces stipitis CBS 6054]
          Length = 1761

 Score = 41.3 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 91   GRTLDKDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G    K   +++ + + +  +     +  +   GL L      +       +     Q I
Sbjct: 1573 GGRRIKKYDSVETFKDPRNKITCFLLNAKAQASGLTL-INATHIFLCEPLVNTSLELQAI 1631

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
             RI      + G  +   V+    +NT++E ++     K       L  +K++
Sbjct: 1632 SRI-----HRIGQTKPTTVWMFAIENTVEESIVIMSTGKR------LEYMKQQ 1673


>gi|307947066|ref|ZP_07662401.1| helicase domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307770730|gb|EFO29956.1| helicase domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 923

 Score = 41.3 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A       G+NLQ   + ++ + L W+   HQQ   R+    Q        V    
Sbjct: 518 RILVAT-DCLSEGINLQQLFDTVIHYDLSWNPTRHQQREGRVNRFGQPAEL----VRSIM 572

Query: 170 LIAQNT-IDELVLQRLRTKST 189
           + + ++ ID  VL  +  K+ 
Sbjct: 573 MFSPDSAIDGAVLDVILRKAK 593


>gi|50285519|ref|XP_445188.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524491|emb|CAG58088.1| unnamed protein product [Candida glabrata]
          Length = 1470

 Score = 41.3 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 62   IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
            I+  + +   +        L  +          +      +      I  L  +  S G 
Sbjct: 1300 ILMYSQSFDFMKVVSQVLSLHNINNICCLQNNRNVGDMIARFKKTSDITCLLLNIRSLGA 1359

Query: 122  GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
            GLNL      +       ++       E   ++R  + G ++  +V+  + +NT++E ++
Sbjct: 1360 GLNLLN-ARHIFLLDPILNV-----NEEIQAMSRNNRIGQRQETYVWNFMLENTVEESIM 1413

Query: 182  Q 182
            +
Sbjct: 1414 R 1414


>gi|146304506|ref|YP_001191822.1| DNA repair helicase RAD25 [Metallosphaera sedula DSM 5348]
 gi|145702756|gb|ABP95898.1| DNA repair helicase RAD25 [Metallosphaera sedula DSM 5348]
          Length = 531

 Score = 41.3 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           E+    +  +++A  +     +   L               +   K+  +  I+EK    
Sbjct: 355 EIVKRAKEGDVKAMEALKVYSRIRYL-------------IGLTKGKLSKIREIVEKEKGR 401

Query: 70  PIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            +++   +      +                +    ++++ +    +L            
Sbjct: 402 KVVIFTQYVEHAELISKLIGGYILTGQMPKRERELVLEKFKQSNSGVLVLTTV---GDEG 458

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           L      +            +Q I+R+G   +  +G  +   +Y LIA+ T +E      
Sbjct: 459 LDIPDASVGIVVAGTS--SKRQYIQRLGRLLRNNSG-NKVATLYELIAKGTSEEY----Q 511

Query: 185 RTKST 189
             K  
Sbjct: 512 SKKRR 516


>gi|321449564|gb|EFX61955.1| hypothetical protein DAPPUDRAFT_120717 [Daphnia pulex]
          Length = 289

 Score = 41.3 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           L           T++K       +N+       +      + G G+NL    N ++ F  
Sbjct: 175 LDVDYLRMDGHTTVEKRNSDCNMFNDPMNIRARVFLISTKAGGMGINLTA-ANRVIIFDA 233

Query: 138 WWDLEEHQQMIERI 151
            W+     Q I R+
Sbjct: 234 SWNPSHDIQSIFRV 247


>gi|221504276|gb|EEE29951.1| DNA repair protein, putative [Toxoplasma gondii VEG]
          Length = 1301

 Score = 41.3 bits (95), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-----TIQEWNEGKIPLLFAHPASC 119
                           DL   +     G    K          ++ ++ +  +L     + 
Sbjct: 1203 NHENCGGGPFAGIFQDLRDSKGDRETGLVATKREIGNGCTLRRQRDDEEGRILLCSLKAG 1262

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              GLNL    +       WW+ +   Q ++RI    Q +
Sbjct: 1263 NVGLNLTR-ASRCYLMDGWWNPQVENQAMKRIWRFGQVR 1300


>gi|260101488|ref|ZP_05751725.1| SNF2/helicase domain protein [Lactobacillus helveticus DSM 20075]
 gi|260084702|gb|EEW68822.1| SNF2/helicase domain protein [Lactobacillus helveticus DSM 20075]
          Length = 57

 Score = 41.3 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G K  V +Y ++ +N+I+E ++     K+ +  ++L+
Sbjct: 1   MGQKHTVKIYKMVTRNSIEEKIISLQHKKADLAKIILD 38


>gi|325287281|ref|YP_004263071.1| helicase domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322735|gb|ADY30200.1| helicase domain protein [Cellulophaga lytica DSM 7489]
          Length = 945

 Score = 41.3 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 87  AFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            F    T  +    ++++   + +I L  A   +   G+NL Y  N +  + + W +   
Sbjct: 473 QFNGSLTDTQQQDILEDFSKEDSEIRLFLAS-DAGSQGVNLHYFCNQMFNYDIPWSIITL 531

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
            Q   RI      + G K+  F+YYLI+ 
Sbjct: 532 DQRNGRID-----RFGQKQTPFIYYLISD 555


>gi|313897952|ref|ZP_07831492.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312957224|gb|EFR38852.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 1747

 Score = 41.3 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T        ++ N+G I +LF   A  G G N+Q     +    + W   + +Q
Sbjct: 1388 FIHDFNTEVAKDRLFKDMNDGNIRVLFGSTAKLGAGTNVQKRIIAIHHVDVPWRASDIEQ 1447

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
               R       Q    + ++ +  + + + D    Q + TKS+    LL       I 
Sbjct: 1448 QNGRAFR----QGNMYKEIYEFRYVTRKSFDAYSWQMVETKSSYMTQLLEGSVMREIE 1501


>gi|219117137|ref|XP_002179363.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409254|gb|EEC49186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 853

 Score = 41.3 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 95  DKDPCTIQEWNEG-----KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ-MI 148
            +   +++ + +         +L                 N  +F      L   +    
Sbjct: 753 HRQIASLRVFQKEIPGPTDPRVLVLKMDDEQSAGLNLTHLNHALFVHPLLALSRAEYDAY 812

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           E   + R R+ G  + V ++  +A+NT+D  + +
Sbjct: 813 ETQAIGRIRRFGQTKTVHLHRFLARNTMDMEIWE 846


>gi|13242495|ref|NP_077508.1| EsV-1-23 [Ectocarpus siliculosus virus 1]
 gi|13177305|gb|AAK14449.1|AF204951_23 EsV-1-23 [Ectocarpus siliculosus virus 1]
          Length = 612

 Score = 41.3 bits (95), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +     + +N G++ LL     +   GL+LQ   + +  F LWW++ +  Q+I R    
Sbjct: 487 RERMRIKEAFNNGEMDLLIIS-KAGSVGLDLQ-CTSKVFMFDLWWNIPQMNQVIGRAIRF 544

Query: 155 RQRQAGFKR---AVFVYY--LIAQNTIDELVLQRLRT--KSTIQDLLLNALKK 200
           +      K     V+VY    + +               K     +L +A+KK
Sbjct: 545 KSHHEPCKHKHVDVYVYQSVFVTK----------QAKGVKVFDAQVLFDAVKK 587


>gi|325284506|ref|YP_004257045.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
 gi|324316680|gb|ADY27791.1| type III restriction protein res subunit [Deinococcus proteolyticus
           MRP]
          Length = 471

 Score = 41.3 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 12/149 (8%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRT 93
            + + E K      + K++ LE I+ +  +   I+  +     +      L  +      
Sbjct: 303 FLAHREAKSIAYGTEGKLRVLEEILAQHPSERTIIFTNDNATVYRISREFLIPSITHQTP 362

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    ++ +  G+  LL         G+++      +V      + E  Q++      
Sbjct: 363 TKERHTLLERFRAGEYRLLVTS-RVLNEGVDVPEASVAVVLSGTSTEREHIQRL------ 415

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            R  +    +   +Y +I + T +E + Q
Sbjct: 416 GRILRRAQGKKAVLYEVITEGTTEERISQ 444


>gi|68059048|ref|XP_671503.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56487742|emb|CAH95874.1| hypothetical protein PB000382.01.0 [Plasmodium berghei]
          Length = 324

 Score = 41.3 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 33/125 (26%), Gaps = 18/125 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH-------DE 54
           K Y     +    +           +  ++  +  N    +D  +    +          
Sbjct: 200 KLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCNHPYLFDGIEEPPYIEGNHLIETSG 259

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ---------GRTLDKDPCTIQE 103
           K+  L+ ++   K   + +++       L  +                   D+    I +
Sbjct: 260 KMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKKYEYLRGGSTVGDERQIRINK 319

Query: 104 WNEGK 108
           +NE  
Sbjct: 320 FNEPN 324


>gi|331222921|ref|XP_003324134.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309303124|gb|EFP79715.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 614

 Score = 40.9 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 22/134 (16%)

Query: 28  KTVKCLQLANGAVY----YDEEKHWKEVHDEKIKALEVIIEKA-------NAAPIIVAYH 76
           +     Q  N  ++     + +  W+     K+  L   ++         N    +V   
Sbjct: 470 QLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVDNLKVFLEGVRGINRTKAVVFSS 529

Query: 77  FNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F   L  ++                     +D    +        +L A   + G G++L
Sbjct: 530 FTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVLLASVQAGGVGIDL 589

Query: 126 QYGGNILVFFSLWW 139
           +   N+ +      
Sbjct: 590 RCAQNVYMMVGTPQ 603


>gi|294659042|ref|XP_461380.2| DEHA2F23870p [Debaryomyces hansenii CBS767]
 gi|202953572|emb|CAG89787.2| DEHA2F23870p [Debaryomyces hansenii]
          Length = 1781

 Score = 40.9 bits (94), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 99   CTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
             +++E+ + +  I     +  +   GL L      +       +     Q I RI     
Sbjct: 1612 DSVEEFKDPQNEITCFLLNAKAQASGLTLVN-ATHIFLCEPLVNTSLELQAISRI----- 1665

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + G +R   V+    +NT++E ++     K 
Sbjct: 1666 HRIGQRRHTTVWMFAIENTVEESIVLMSTNKR 1697


>gi|326473702|gb|EGD97711.1| hypothetical protein TESG_05112 [Trichophyton tonsurans CBS 112818]
          Length = 314

 Score = 40.9 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 96  KDPCTIQEWNEGKIPL--LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
           +    +Q +      +  L         GLNLQ     +V FS                +
Sbjct: 149 EREHLVQAFTTDPERVMVLVCSYNVSSTGLNLQKLCRNVVIFSPPTSKASQD-----QAI 203

Query: 154 TRQRQAGFKRAVFVYYLIAQNT 175
            R ++ G    V VY +  +++
Sbjct: 204 GRVKRLGQTHVVHVYEIRVRDS 225


>gi|331222825|ref|XP_003324086.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309303076|gb|EFP79667.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 614

 Score = 40.9 bits (94), Expect = 0.100,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 22/134 (16%)

Query: 28  KTVKCLQLANGAVY----YDEEKHWKEVHDEKIKALEVIIEKA-------NAAPIIVAYH 76
           +     Q  N  ++     + +  W+     K+  L   ++         N    +V   
Sbjct: 470 QLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVDNLKVFLEGVRGINRTKAVVFSS 529

Query: 77  FNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F   L  ++                     +D    +        +L A   + G G++L
Sbjct: 530 FTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVLLASVQAGGVGIDL 589

Query: 126 QYGGNILVFFSLWW 139
           +   N+ +      
Sbjct: 590 RCAQNVYMMVGTPQ 603


>gi|302822206|ref|XP_002992762.1| hypothetical protein SELMODRAFT_430930 [Selaginella moellendorffii]
 gi|300139407|gb|EFJ06148.1| hypothetical protein SELMODRAFT_430930 [Selaginella moellendorffii]
          Length = 196

 Score = 40.9 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 23/60 (38%)

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             I  +  + +   G  + V +   I +++++E + Q    K  +    L   +  +  +
Sbjct: 129 SNIPAVAPSSESSIGQTKNVSIKRFIVKDSVEERMQQVQARKQRLIAGALTDEEVRSARI 188


>gi|123408237|ref|XP_001303158.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121884515|gb|EAX90228.1| hypothetical protein TVAG_086010 [Trichomonas vaginalis G3]
          Length = 1179

 Score = 40.9 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 61/188 (32%), Gaps = 22/188 (11%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y +  +E    ++ EN +  +      K   L++      +          K+  L  +
Sbjct: 302 MYIELLQESSEKIRSENADIKDLCEFASKLRALSSHPFLATDTPCDIMTASGKVPVLSKL 361

Query: 63  I--EKANAAPIIVAYH---------FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK-IP 110
           +  ++ +   + +  +           ++   +        T ++    I ++N  +   
Sbjct: 362 LSIQRNDGKKVAIFCNSNMVTALHTIMTECKTIYTQIEANSTENEANILIDDFNHQQGHR 421

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDL-EEHQQMIERIGVTRQRQAGFKRAVFVYY 169
           ++          L  ++ G  +  F   W   E+ + +++      + Q        +Y 
Sbjct: 422 VIIVPANYASLCLE-KFNGETVFAFDTDWTPIEDGKLIVKWHARNSKAQ--------IYR 472

Query: 170 LIAQNTID 177
           LI  ++ +
Sbjct: 473 LITSDSFE 480


>gi|330824496|ref|YP_004387799.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329309868|gb|AEB84283.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 760

 Score = 40.9 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 638 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 691

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K  V V YL    +     L  +  K  +       + +  + V
Sbjct: 692 SWRIGQKLPVRVIYLGYTASSQMTCLGLMARKIMVSQSTSGDVPESGLDV 741


>gi|312380577|gb|EFR26533.1| hypothetical protein AND_07337 [Anopheles darlingi]
          Length = 660

 Score = 40.9 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              L  + + +  G    +       +  G++ ++ A  A              +V +++
Sbjct: 152 RRRLNYVAEPYHAGMPASRRRTIQNAFMGGELRIVVATIAFGMGINK--ADIRAIVHYNM 209

Query: 138 WWDLEEHQQMIER---------IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + E + Q + R           +    +   +  +     I  N+ID  V+++L  K 
Sbjct: 210 PKNFESYVQEVGRAGRDGKLSHCHLFLDSRGSDRNELR--RFIYANSIDRHVVRKLLQKI 267


>gi|321465194|gb|EFX76197.1| hypothetical protein DAPPUDRAFT_249322 [Daphnia pulex]
          Length = 292

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + ++ +L     + G GLNL    N L      W+ +     +E     R  + G K+ 
Sbjct: 130 QKKEVHVLLVSLLAGGTGLNLIGPANHLFLSDQNWNPQ-----VEAQAGDRIYRVGQKKE 184

Query: 165 VFV--YYLIAQNT 175
           V V    L+A  T
Sbjct: 185 VHVLLVSLLAGGT 197



 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164
            + ++ +L     + G GLNL    N L      W+ +     +E     R  + G K+ 
Sbjct: 181 QKKEVHVLLVSLLAGGTGLNLIGPANHLFLSDQNWNPQ-----VEAQAGDRIYRVGQKKE 235

Query: 165 VFV 167
           V V
Sbjct: 236 VHV 238



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV-- 167
            +L     + G GLNL    N L      W+ +     +E     R  + G K+ V V  
Sbjct: 84  KVLLVSLLAGGTGLNLIGPANHLFLSDQNWNPQ-----VEAQAGDRIYRVGQKKEVHVLL 138

Query: 168 YYLIAQNT 175
             L+A  T
Sbjct: 139 VSLLAGGT 146


>gi|294807616|ref|ZP_06766409.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294445052|gb|EFG13726.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 442

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  ++    I ++  G++  L A P   G GLN QY  +  + F       +++   
Sbjct: 343 YGSQDDEEADKVIADFKNGRLKYLAAKPEMLGEGLNFQYHCHKAIMFI------DYRFND 396

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +   + R  +   K  V +Y + A++  +  + +    K      ++
Sbjct: 397 KFQAIARIYRFMQKHPVDLYLVYAES--EGEIFKSFMQKWAQHREMV 441


>gi|78224251|ref|YP_385998.1| helicase-like [Geobacter metallireducens GS-15]
 gi|78195506|gb|ABB33273.1| Helicase-like protein [Geobacter metallireducens GS-15]
          Length = 993

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    +     + +N    P +    +    GL+     + +V + L  +  + +Q   R
Sbjct: 809 GEAQLRTEDLQKAFNSPFWPHVLVTTSVGQEGLDFHLWCDTVVHWDLPRNPVDLEQREGR 868

Query: 151 IGVTR--QRQAGFKRAVFVY 168
           I        +      V +Y
Sbjct: 869 IQRFGGLCIRQAIASKVDIY 888


>gi|325957866|ref|YP_004289332.1| helicase domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329298|gb|ADZ08360.1| helicase domain protein [Methanobacterium sp. AL-21]
          Length = 769

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 16/169 (9%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K  + +Q+        +  + + +   + +     I +      I A  F     +  + 
Sbjct: 362 KLKRLMQI---LKKELKNSNSRIIIFTQFRDSVENIYQHCMETNINAVKF---YGQASRE 415

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +G T  K    I+ +  G+  +L    +    G+++    +++V +          Q 
Sbjct: 416 NEKGLTQKKQKEIIKSFKNGEYDVLI-STSVAEEGIDIPSV-DLVVLYEPVPSEIRMIQR 473

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R G   + +         + LI + T DE        K       LN
Sbjct: 474 RGRTGRKNRGRM--------FILITKGTRDESYYWSSINKEKQMKKQLN 514


>gi|301155358|emb|CBW14824.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Haemophilus parainfluenzae
           T3T1]
          Length = 920

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 8/145 (5%)

Query: 33  LQLANGAVYYDEEKHW--KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+   A   DE+ HW    +   + + + VI + A  A  +       +  R      +
Sbjct: 433 HQITIDAAEVDEKIHWLIDFLKSHRNEKILVICKTAQTAIQLEQILREKEAIRSAVFHER 492

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++D       +      +    +    G N Q+  +++  F L  + +  +Q I R
Sbjct: 493 MSIIERDRAAAYFADTDNGAQVLLSSSIGSEGRNFQFACHLV-LFDLPENPDLLEQCIGR 551

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNT 175
           +      + G  R V +Y      +
Sbjct: 552 LD-----RIGQTRDVQIYVPCLSGS 571


>gi|117925306|ref|YP_865923.1| helicase domain-containing protein [Magnetococcus sp. MC-1]
 gi|117609062|gb|ABK44517.1| helicase domain protein [Magnetococcus sp. MC-1]
          Length = 948

 Score = 40.9 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T ++    +   +E    LL A       G+NLQ   N +V + L W+   H+Q   R+ 
Sbjct: 519 TPEEREEKVHGLSEFAKRLLVAT-DCLSEGINLQNLFNAVVHYDLTWNPTRHEQREGRVD 577

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
              Q        V V     +N  +D  VLQ +  K+ 
Sbjct: 578 RFGQPSPK----VRVLMYYGENNPVDGAVLQVILRKAE 611


>gi|58038295|ref|YP_190264.1| DNA methylase [Gluconobacter oxydans 621H]
 gi|58000709|gb|AAW59608.1| DNA methylase [Gluconobacter oxydans 621H]
          Length = 1713

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +         ++ N G+  +L    A+ G G+N Q     L    + W + +  Q
Sbjct: 1331 FMQHYKKSAAKQGLFRDLNSGRKRILIGSSATMGTGVNAQQRLIALHHLDVPWLVADIIQ 1390

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               RI      Q      + +Y    + ++D    Q L  K  
Sbjct: 1391 REGRIER----QGNQNPVIQIYAYALKGSVDATNWQLLERKQR 1429


>gi|229845571|ref|ZP_04465698.1| ATP-dependent helicase HepA [Haemophilus influenzae 6P18H1]
 gi|229811506|gb|EEP47208.1| ATP-dependent helicase HepA [Haemophilus influenzae 6P18H1]
          Length = 923

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATTIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFATNLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|148241073|ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
 gi|146411449|gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
          Length = 1748

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 11/138 (7%)

Query: 67   NAAPIIVAYHFNSD----LARLQKAFPQGRTLDKDPCTIQEW---NEGKIPLLFAHPASC 119
                   AY +  D    L          +   K     + +     GK+  L     + 
Sbjct: 1364 EKRRGFSAYRWIRDELVRLGVPPGEIAFMQDYKKSEAKQRLFGDVRAGKVRFLIGSSDTM 1423

Query: 120  GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            G G+N Q     L    + W   + +Q   RI      Q      + ++    + ++D  
Sbjct: 1424 GTGVNAQLRLKALHHLDVPWLPSQIEQREGRIVR----QGNQHDEIDIFAYATEGSLDAQ 1479

Query: 180  VLQRLRTKSTIQDLLLNA 197
            + Q    K+      L+ 
Sbjct: 1480 MWQNNERKARFIAAALSG 1497


>gi|71993231|ref|NP_001023359.1| hypothetical protein T05A12.4 [Caenorhabditis elegans]
 gi|54027931|gb|AAV28333.1| Hypothetical protein T05A12.4a [Caenorhabditis elegans]
          Length = 1622

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                         +L    + C +GLN+  G N ++F           Q I RI      
Sbjct: 1481 KKVFDFDVSEDTKVLLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRI-----N 1534

Query: 158  QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            + G KR + VY+L+   ++D  + +  + 
Sbjct: 1535 RFGQKRDMNVYHLLVDGSLDIELRETAKK 1563


>gi|321476508|gb|EFX87468.1| hypothetical protein DAPPUDRAFT_96517 [Daphnia pulex]
          Length = 325

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           L           T++K       +N+       +      + G G+NL    N ++ F  
Sbjct: 251 LDVDYLRMDGHTTVEKRNSDCNMFNDPMNIRARVFLISTKAGGMGINLTA-ANRVIIFDA 309

Query: 138 WWDLEEHQQMIERIGV 153
            W+     Q I R+  
Sbjct: 310 SWNPSHDIQSIFRVYR 325


>gi|154243836|ref|YP_001409409.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162958|gb|ABS70173.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1697

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
             GK+  L     + G G+N Q     L    + W   + +Q   RI      Q      +
Sbjct: 1360 AGKVRFLLGSSDTMGTGVNAQLRLKALHHLDVPWLPSQIEQREGRIAR----QGNQHDVI 1415

Query: 166  FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
             ++      ++D  + Q    K+      L+ 
Sbjct: 1416 DIFAYATLGSLDARMWQNNERKARFIAAALSG 1447


>gi|320593937|gb|EFX06340.1| DNA/RNA helicase [Grosmannia clavigera kw1407]
          Length = 1000

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
            G   +L A   +   GL+L    +       +W+ ++     ER  + R  +AG     
Sbjct: 904 AGVSRVLIATIGTSAEGLDLTR-ASYAFILEPYWNHDQ-----ERQALGRVLRAGQCAQT 957

Query: 166 FVYYLIAQNTIDELVLQ 182
            +Y L+  + I E ++Q
Sbjct: 958 HLYKLVCPDNIAERLIQ 974


>gi|18071214|ref|NP_542283.1| putative DNA methylase [Sinorhizobium phage PBC5]
 gi|17940320|gb|AAL49564.1|AF448724_1 putative DNA methylase [Sinorhizobium phage PBC5]
          Length = 2849

 Score = 40.9 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 3/111 (2%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  T  +      +   G++  LF      G G N+Q     L      W   + +Q
Sbjct: 1263 FIHDANTQAQKEELFGKVRSGRVRFLFGSTPKMGAGTNVQNRLVALHHIDAPWRPSDLEQ 1322

Query: 147  MIER---IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               R    G     +      + +     +NT+D    Q +  K+     +
Sbjct: 1323 RDGRGIRQGNELYAEDPDGFEIEILRYATKNTLDARTWQTIEAKARFIQQV 1373


>gi|7508223|pir||T32703 hypothetical protein T22D1.7 - Caenorhabditis elegans
          Length = 869

 Score = 40.5 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 98  PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
                        +L    + C +GLN+  G N ++F           Q I RI      
Sbjct: 728 KKVFDFDVSEDTKVLLCSLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRI-----N 781

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           + G KR + VY+L+   ++D  + +  + 
Sbjct: 782 RFGQKRDMNVYHLLVDGSLDIELRETAKK 810


>gi|145631648|ref|ZP_01787412.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
 gi|144982727|gb|EDJ90259.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
          Length = 923

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGVKGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKIFVICQTAATTIQLEQILREREAIRTAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFATNLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|14520497|ref|NP_125972.1| Hef nuclease [Pyrococcus abyssi GE5]
 gi|5457712|emb|CAB49203.1| Putative ATP-dependent ERCC4-like helicase [Pyrococcus abyssi GE5]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 35/223 (15%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y    ++LY + +  +  A        +  +     +   E        +   + ++
Sbjct: 300 LRVY---LKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVK 356

Query: 61  VIIEKANAAPIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQ 102
             + K   + IIV  ++                     + +  K   +G +  +    + 
Sbjct: 357 EQLSKKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILD 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G+  +L A  +    GL++    +++VF+          Q        R+ + G +
Sbjct: 417 SFARGEFNVLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRSVQ--------RRGRTGRQ 466

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL----NALKKE 201
           +   V  LIAQ T DE      + K       +     A+K+E
Sbjct: 467 KPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIKRE 509


>gi|321472411|gb|EFX83381.1| hypothetical protein DAPPUDRAFT_48010 [Daphnia pulex]
          Length = 657

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 64/199 (32%), Gaps = 19/199 (9%)

Query: 10  ELYCDLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEK---HWKEVHDEKIKALEV 61
           E+  DL+ +        S     K  +  ++        E++       +  +   ++  
Sbjct: 432 EMMSDLKSKFGNDCQIGSAVSHPKLTRLKEIVLEHFQKAEKEGRPTRVMIFSQYRDSVNE 491

Query: 62  IIEKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           I+       P+I A  F            +G T       I++++EG    L A      
Sbjct: 492 IVALLEEYAPLIKAMSFVGHGNSSGGVKTKGFTQADQIRIIKQFSEGDYNTLVAT-CVGE 550

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL++    ++++ + +        Q   R G  R  +        +  L+ +   +   
Sbjct: 551 EGLDI-GDVDMIICYDVHKSPVRLVQRCGRTGRQRDGR--------IVMLMTEGKEEHTY 601

Query: 181 LQRLRTKSTIQDLLLNALK 199
            Q +  K  +   ++   K
Sbjct: 602 NQCMSQKKNLLKNIVGNPK 620


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + II       +        +                    ++E+ EGK  +L   
Sbjct: 259 LTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITT 318

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   N++V + L  + E +   I R G   +             LI +  
Sbjct: 319 DLWGRGIDVQQV--NLVVNYDLPINKELYIHRIGRSGRFGRSGIA-------INLITKE- 368

Query: 176 IDELVLQRLRT 186
            DE +L  L  
Sbjct: 369 -DESMLSLLER 378


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + II       +        +                    ++E+ EGK  +L   
Sbjct: 260 LTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITT 319

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   N++V + L  + E +   I R G   +             LI +  
Sbjct: 320 DLWGRGIDVQQV--NLVVNYDLPINKELYIHRIGRSGRFGRSGIA-------INLITKE- 369

Query: 176 IDELVLQRLRT 186
            DE +L  L  
Sbjct: 370 -DESMLSLLER 379


>gi|289628782|ref|ZP_06461736.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330870249|gb|EGH04958.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L     I    + W                R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGWNVYTVQ------QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|262282774|ref|ZP_06060542.1| predicted protein [Streptococcus sp. 2_1_36FAA]
 gi|262262065|gb|EEY80763.1| predicted protein [Streptococcus sp. 2_1_36FAA]
          Length = 128

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +  +P   G  ++L    +  ++F   ++L    Q   RI           +    YYL 
Sbjct: 6   MILNPQILGKSVSLHREVHDALYFEYNFNLTFILQYRYRIHRLG---LEDNQYTRYYYLQ 62

Query: 172 AQ---------NTIDELVLQRLRTKSTIQDLLLN 196
            +           IDE +  +L+ K  I    ++
Sbjct: 63  TKSEPADSGDAGYIDEKIYSKLKKKEEIMYNAID 96


>gi|222475988|ref|YP_002564509.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454359|gb|ACM58623.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 55  KIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEGKI 109
           K+  L+ ++++ +    I+      F  D++R             D+    +  +  G+ 
Sbjct: 332 KLDTLDNLLKRHHDDRTIIFTANNDFAYDISREFIVPCITHQTKTDERTEILDRFRSGEY 391

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L                 N+ +  S      ++ Q + RI      +    +   +Y 
Sbjct: 392 SMLVTSQVL--DEGIDVPAANVGIILSGSASKRQYAQRLGRILRPTDDR----QPARLYE 445

Query: 170 LIAQNTIDELVLQRLRT 186
           +I ++T++  V QR R 
Sbjct: 446 IITEDTMETYVSQRRRE 462


>gi|89098234|ref|ZP_01171119.1| hypothetical protein B14911_10747 [Bacillus sp. NRRL B-14911]
 gi|89087091|gb|EAR66207.1| hypothetical protein B14911_10747 [Bacillus sp. NRRL B-14911]
          Length = 1115

 Score = 40.5 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 6/111 (5%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           T  +     Q+  +    +          GL+L      L+++   W L           
Sbjct: 829 TNTRSEWLKQKIEDEGYDVCIVSQELVKVGLDLL-CCPTLIYYQFSWSL-----FTINQS 882

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
             R  + G      ++YL  +N+  E + Q +  K+     +   L  + +
Sbjct: 883 AKRSWRIGQTEECRLFYLAYENSFQEKMAQIIAMKNRATTAINGELSSDGL 933


>gi|66362534|ref|XP_628233.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
            [Cryptosporidium parvum Iowa II]
 gi|46229715|gb|EAK90533.1| protein with DEXDc plus ring plus HELICc; possible SNF2 domain
            [Cryptosporidium parvum Iowa II]
          Length = 2042

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 60   EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPC-------TIQEWN------E 106
               I   N   II+   F   +  L  A      L K  C        I+E++      +
Sbjct: 1863 IKWILNNNNDKIIIFSDFQPVIDILSSAMHLNEILFKKYCGGKSEYHIIREFSSSENSID 1922

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L  +  + G G+N+    N ++F S   +  +  Q I RI      + G  +   
Sbjct: 1923 INYRVLLCNHLNVGKGVNITA-ANHIIFVSPLLNKSDELQAIGRII-----RMGQTKTPH 1976

Query: 167  VYYLIAQNTIDELVLQRL 184
            ++  I  N+IDEL+ Q L
Sbjct: 1977 IWNFIIHNSIDELIFQYL 1994


>gi|260753609|ref|YP_003226502.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552972|gb|ACV75918.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 894

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 13/115 (11%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
             +                 +N       +L A       GLNL      ++     W+ 
Sbjct: 731 FARMMSGATAPQTRRMLQSAFNRSSSWPMVLLAQSRVGREGLNLHEACRTVILLHAEWNP 790

Query: 142 EEHQQMIERIGVTRQRQAGFKRA-----------VFVYYLIAQNTIDELVLQRLR 185
              +Q I R+           R            + V+ ++   T D+   Q L+
Sbjct: 791 GIVEQQIGRVDRKNSLWLREWRKWRDHGDGLPPRIRVHPVVVSGTYDDHNWQVLK 845


>gi|313889321|ref|ZP_07822970.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122312|gb|EFR45402.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 119

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  +  +      +  +G+I +L       G G N+Q     L    + W   + +Q
Sbjct: 23  FIHEANSDKQKDELFAKVRKGEIRILMGSTQKMGAGTNVQNKLIALHDLDVPWRPADLEQ 82

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              RI      Q    + V +Y  + +NT D  +  R  
Sbjct: 83  RAGRIVR----QGNENKEVNIYRYVTENTFDAYLWVRHE 117


>gi|154492435|ref|ZP_02032061.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
 gi|154087660|gb|EDN86705.1| hypothetical protein PARMER_02069 [Parabacteroides merdae ATCC
           43184]
          Length = 835

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              +  ++    I ++ +G++  L A P   G GLN QY  +  + F       +++   
Sbjct: 342 YGSQDDEEADKVISDFKDGRLKYLAAKPEMLGEGLNFQYHCHKAIMFI------DYRFND 395

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   + R  +   +  V +Y + A++  +  + +    K      ++  +
Sbjct: 396 KFQAIARIYRFMQQHPVDLYLVYAES--EGEIFKSFMQKWAQHREMVANM 443


>gi|297723371|ref|NP_001174049.1| Os04g0566100 [Oryza sativa Japonica Group]
 gi|255675696|dbj|BAH92777.1| Os04g0566100 [Oryza sativa Japonica Group]
          Length = 914

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 169 YLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           +L+ + ++DE + +  R K  +   +L +
Sbjct: 782 WLVTKGSVDENIYEIARRKLVLDAAILQS 810


>gi|330885761|gb|EGH19910.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L     I    + W                R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGWNVYTVQ------QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|320326210|gb|EFW82265.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 752

 Score = 40.5 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L     I    + W                R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGWNVYTVQ------QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|330931683|ref|XP_003303496.1| hypothetical protein PTT_15727 [Pyrenophora teres f. teres 0-1]
 gi|311320467|gb|EFQ88402.1| hypothetical protein PTT_15727 [Pyrenophora teres f. teres 0-1]
          Length = 735

 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 52  HDEKIKALEVIIEKANAAP---IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           H  K+     I   +       +I A           +         +     Q  N   
Sbjct: 566 HVRKLYPERKICITSQYLKVLDMIKAALHERFGIIALEYNGVTPDSVRLENLSQFKNYSH 625

Query: 109 IPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
             + L     + G G+N+Q   +I++   +WW+     +  E    +R  + G    V +
Sbjct: 626 PSVPLLLSGKAGGEGINIQQ-ASIMIQTEIWWN-----RNAELQVYSRLLRPGQLHKVII 679

Query: 168 YYLIAQN-TIDELVLQRLRTKSTIQDLLL 195
             L  +  +ID+ ++     K T   +L+
Sbjct: 680 IRLQGKGCSIDDCIIGVQCRKKTTNTILM 708


>gi|119720665|ref|YP_921160.1| type III restriction enzyme, res subunit [Thermofilum pendens Hrk
           5]
 gi|119525785|gb|ABL79157.1| DNA repair helicase RAD25 [Thermofilum pendens Hrk 5]
          Length = 451

 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 25/182 (13%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAA 69
           E    L  ++ EA  +     +  ++A  A               K++ LE ++ +    
Sbjct: 284 ERLAALSVKDPEAREALLAWYRARRIALHA-------------SSKMEVLEELLARHRGD 330

Query: 70  PIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            +++       + R+               ++    +  + +G +  +            
Sbjct: 331 KVLIFAEHGDVVRRISSRFLVPEITYRTPEEERRAVMSAFRKGLVRAIVTSKVLEEGVD- 389

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                N+ V  S      E  Q + R+   R      KRAV VY ++   T +  + ++ 
Sbjct: 390 -VPDANVAVILSGTASRREFVQRLGRVLRPR----EGKRAV-VYEVVTSGTKEVEISRKR 443

Query: 185 RT 186
           R 
Sbjct: 444 RK 445


>gi|68468369|ref|XP_721744.1| hypothetical protein CaO19.1667 [Candida albicans SC5314]
 gi|68468612|ref|XP_721625.1| hypothetical protein CaO19.9236 [Candida albicans SC5314]
 gi|46443548|gb|EAL02829.1| hypothetical protein CaO19.9236 [Candida albicans SC5314]
 gi|46443676|gb|EAL02956.1| hypothetical protein CaO19.1667 [Candida albicans SC5314]
          Length = 1250

 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               + + +      I+  +F + + R Q  +                N G I  L  + A
Sbjct: 1088 YYLIELLEILKIRHIIYANFITPIKRAQNLYDFSNYDVDKEE-----NNGGI-CLVMNIA 1141

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               HGLN+    +I        +    Q+ IE   + R  + G  + V V  L  +  +D
Sbjct: 1142 HSSHGLNIIAATHIYFI-----NP-VKQESIEAQAIKRAHRIGQTKEVTVKTLYLKG-VD 1194

Query: 178  E-LVLQRLRTKSTIQD 192
            E  +L R   K     
Sbjct: 1195 ELKILSR-NEKLKNAK 1209


>gi|242023841|ref|XP_002432339.1| ATP-dependent DNA helicase Q4, putative [Pediculus humanus
           corporis]
 gi|212517762|gb|EEB19601.1| ATP-dependent DNA helicase Q4, putative [Pediculus humanus
           corporis]
          Length = 1250

 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L+   +++  G    +     + +  G + ++ A  A              ++ +++  D
Sbjct: 808 LSWTAESYHAGMAGPRRKQVQKAFMNGNVRIVVATVAFGMGINK--KDIRSVIHYNMPRD 865

Query: 141 LEEHQQMIER------IGVTRQRQAGFKRAVF-VYYLIAQNTIDELVLQRLRTK 187
            E + Q + R                  + V  +   I  NTI+  VL++L  +
Sbjct: 866 FESYVQEVGRAGRDGMFAHCHLFLDPNGKDVNELKRHINSNTIERHVLRKLLER 919


>gi|260796587|ref|XP_002593286.1| hypothetical protein BRAFLDRAFT_59324 [Branchiostoma floridae]
 gi|229278510|gb|EEN49297.1| hypothetical protein BRAFLDRAFT_59324 [Branchiostoma floridae]
          Length = 378

 Score = 40.5 bits (93), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 20/161 (12%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQ 90
              +     E  + K++AL  ++   N    +V  +    L  L +              
Sbjct: 214 KLKQFYVKVEREEHKLEALCDLLPLLNTTQAVVFCNTPRKLDWLAERMSARGITVSATHH 273

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
             + ++   T+QE+  G   +L             +     ++ + L  + E     I R
Sbjct: 274 DMSQEERDLTLQEFRSGSSRVLITTEQLAREIRQSRISCPTIINYDLPSNPEN---YITR 330

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           +G +   +           L+ +   +E +L+ +  K   Q
Sbjct: 331 VGGSDVLRRR-----IAVNLMVKG--EERMLRDIEQKYNTQ 364


>gi|171911735|ref|ZP_02927205.1| ATP-dependent helicase HepA [Verrucomicrobium spinosum DSM 4136]
          Length = 921

 Score = 40.5 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCG 120
           +I K       +      +L      F +G T+ +       +  E    +L        
Sbjct: 469 LICKTKHLVEEIHTLLLHELNVNVALFHEGLTMLQRDRNAAYFAEEDGARVLICS-EIGS 527

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G N Q+  + LV F L  + E  +Q I R+      + G    + ++      T
Sbjct: 528 EGRNFQF-AHHLVLFDLPENPELLEQRIGRLD-----RIGQTDTIHIHVPYVAGT 576


>gi|119613043|gb|EAW92637.1| RAD26L hypothetical protein, isoform CRA_c [Homo sapiens]
          Length = 672

 Score = 40.5 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 18/133 (13%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 509 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 553

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+     Q
Sbjct: 554 LDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQ 612

Query: 147 MIER-IGVTRQRQ 158
            I+R     R+ +
Sbjct: 613 AIDRTQTHCRRER 625


>gi|110598199|ref|ZP_01386476.1| Helicase-like [Chlorobium ferrooxidans DSM 13031]
 gi|110340213|gb|EAT58711.1| Helicase-like [Chlorobium ferrooxidans DSM 13031]
          Length = 943

 Score = 40.5 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 45/219 (20%)

Query: 13  CDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPII 72
            +L    I A +               V  ++    +     K     +          I
Sbjct: 441 AELNSNEISALSLL------------CVKAEQLSGIEHDWKAKQAIEFIKTWLKEGFNPI 488

Query: 73  VAYHFNSDLARLQKAFPQGRT-------------LDKDPCTIQEWNEGKIPLLFAHPASC 119
           V   + +    +      G                ++    I    +    ++ A     
Sbjct: 489 VFCRYIATANYIGALLKNGLPESVDVQVVTSELADEQRREKINLMADSTQRVMVAT-DCL 547

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDE 178
             G+NLQ     ++ + L W+    +Q   R+    Q      + V    L   +  ID 
Sbjct: 548 SEGINLQQLFTAVLHYDLPWNPNRIEQREGRVDRFGQ----QAKLVKTLLLWGDDNPIDR 603

Query: 179 LVLQRLRTK-STIQD-------------LLLNALKKETI 203
           +VL  L  K   IQ               +++A+ ++ +
Sbjct: 604 IVLNILIRKVRDIQKTTGVSISLGDDTTSIMDAVIRDVL 642


>gi|120609241|ref|YP_968919.1| DEAD-like helicase [Acidovorax citrulli AAC00-1]
 gi|120587705|gb|ABM31145.1| DEAD-like helicase [Acidovorax citrulli AAC00-1]
          Length = 757

 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 636 RREDWIAEQVDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQ------QAARR 689

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ + V +L    +     L+ +  K  +   
Sbjct: 690 SWRIGQKQDIRVIFLGYAASSQMACLKLMAQKIMVAQS 727


>gi|47225441|emb|CAG11924.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 908

 Score = 40.1 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 46  KHWKEVHDEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTI 101
                    K+  L  ++    + + +  ++V  ++   L  LQ          +    +
Sbjct: 564 GELSTADSGKLLVLSELLGAIRQLSPSDRVVVVSNYTKTLDLLQDLLDGHMPTGQRQRLV 623

Query: 102 QEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
             +N       L      + G GLNL  G + LV + + W+     Q
Sbjct: 624 DSFNSPFSQNFLFLLSSKAGGLGLNL-VGASHLVLYDIDWNPANDIQ 669



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKK 200
             TI+E V QR  +K  +   +++  K 
Sbjct: 779 AGTIEERVFQRQVSKQGLSGTVVDLGKA 806


>gi|308463688|ref|XP_003094116.1| CRE-CUTL-6 protein [Caenorhabditis remanei]
 gi|308248528|gb|EFO92480.1| CRE-CUTL-6 protein [Caenorhabditis remanei]
          Length = 1661

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 43/156 (27%), Gaps = 25/156 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSAS-KTVKCLQLANGAVYYDEEKHWKE----------VH 52
           Y     + Y +L      + N      ++  +  N A    +  H  +            
Sbjct: 674 YKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQARLQQLLKS 733

Query: 53  DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK----------DPCT 100
             K+  L+ ++   K     +++       L  LQ+     R   +              
Sbjct: 734 SGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQA 793

Query: 101 IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVF 134
           +  +N              + G G+NL     ++ +
Sbjct: 794 LDHYNAPGSTDFAFLLSTRAGGLGINLATADTLISY 829


>gi|282162816|ref|YP_003355201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155130|dbj|BAI60218.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 765

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 38/220 (17%)

Query: 1   MKQY-HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-A 58
           +K+Y  + + E          +A     +  +      GA+             EK+K  
Sbjct: 302 LKKYFDRLKEEA---GSKGGSKATKRLMQDARL----AGAIRVAGTADEVNPKTEKVKEI 354

Query: 59  LEVIIEKANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPC 99
           +   +++  ++ IIV  +F                      + +  K   +G +  K   
Sbjct: 355 VVEQLKEKPSSRIIVFTNFRDTAEFVSRELAAVEGVKPVRFVGQASKLNDKGLSQKKQVE 414

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            +  +  G+   L A  +    GL++    ++++F+          Q   R G     + 
Sbjct: 415 ILDAFRAGEFNTLIAT-SVAEEGLDIPST-DLVIFYEPVPSEIRSIQRRGRTGRNAVGR- 471

Query: 160 GFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                  V  LI++ T DE   +  + K       +N +K
Sbjct: 472 -------VIVLISKGTRDEGTYRVSQAKEKKMYRTMNDMK 504


>gi|119357113|ref|YP_911757.1| helicase domain-containing protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354462|gb|ABL65333.1| helicase domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 958

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I E  + K  LL A       G+NLQ     ++ + L W+    +Q   R+    Q
Sbjct: 525 RKQKIDEMGKAKHRLLIAT-DCLSEGINLQQQFTAVLHYDLPWNPNRLEQREGRVDRFGQ 583

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             A   +   +Y   A N ID +VL  L  K
Sbjct: 584 P-APEVKTCLLY--GADNPIDGIVLDVLLRK 611


>gi|289650675|ref|ZP_06482018.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 733

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L     I    + W                R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGWNVYTVQ------QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V +  +  +     LQ +  K  +   
Sbjct: 684 SWRIGQKQDVRVIFFGSIGSSQITCLQLMAKKIAVSQS 721


>gi|299472761|emb|CBN80329.1| Helicase [Ectocarpus siliculosus]
          Length = 609

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +     Q +N G++ LL     +   GL+LQ   + +  F LWW++ +  Q+I R    +
Sbjct: 485 ERMRIKQAFNNGEMDLLIIS-KAGSVGLDLQ-CTSKVFMFDLWWNIPQMNQVIGRAIRFK 542

Query: 156 QRQAGFKR---AVFVYY--LIAQNTIDELVLQRLRT--KSTIQDLLLNALKK 200
                 K     V+VY    + +               K     +LL+A+KK
Sbjct: 543 SHHEPCKHKHVDVYVYQSVFVTK----------QDKGVKVFDAQVLLDAVKK 584


>gi|256544993|ref|ZP_05472361.1| SNF2 domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399289|gb|EEU12898.1| SNF2 domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 46

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
             G K  V +++++ ++TIDE V + L  K+  Q  L++++K+
Sbjct: 1   MQGQKETVVIHHILEKDTIDENVKKALERKNKTQATLIDSVKE 43


>gi|239624279|ref|ZP_04667310.1| superfamily protein DNA and RNA helicase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520665|gb|EEQ60531.1| superfamily protein DNA and RNA helicase [Clostridiales bacterium
           1_7_47FAA]
          Length = 341

 Score = 40.1 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
               W   +  Q   RI      Q      V VY  + + T D  + Q +  K      +
Sbjct: 6   LDCPWRPGDLAQRKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQI 61

Query: 195 LNA 197
           + +
Sbjct: 62  MTS 64


>gi|331224893|ref|XP_003325118.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309304108|gb|EFP80699.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 508

 Score = 40.1 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 22/129 (17%)

Query: 28  KTVKCLQLANGAVY----YDEEKHWKEVHDEKIKA-------LEVIIEKANAAPIIVAYH 76
           +     Q  N  ++     + +  W+     K+             +   N    +V   
Sbjct: 376 QLTMLRQFCNHPLFARSEIEFQPEWRWQDSAKVVHLVNNLKVFLEGVRGINRTKAVVFSS 435

Query: 77  FNSDLARLQ-----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125
           F   L  ++                     +D    +        +L A   + G G++L
Sbjct: 436 FTGFLGIIERALEENNIKSTWLTGDDTPKKRDENLEEFRTNNTCNVLLASVQAGGVGIDL 495

Query: 126 QYGGNILVF 134
           +   N+ + 
Sbjct: 496 RCAQNVYMM 504


>gi|7229681|gb|AAF42939.1|AF233659_1 RECQ4 [Drosophila melanogaster]
          Length = 1530

 Score = 40.1 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 13/168 (7%)

Query: 32   CLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
             LQL N   +   +            E+I        +    P          +    + 
Sbjct: 1034 LLQLLNSERFEPCQSIIIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEP 1093

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            +  G    +     + +   ++ ++ A  A              ++ +++  + E + Q 
Sbjct: 1094 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINK--PDIRAVIHYNMPRNFESYVQE 1151

Query: 148  IERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            I R G             A       +   +  N+ID  V+++L  K 
Sbjct: 1152 IGRAGRDGLPSHCHLFLDAKGGDQSELRRHVYSNSIDRHVIRKLLQKI 1199


>gi|221119534|ref|XP_002160965.1| PREDICTED: similar to MGC131155 protein [Hydra magnipapillata]
          Length = 1013

 Score = 40.1 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 14/58 (24%), Gaps = 6/58 (10%)

Query: 3   QYHKFQRELYCDLQGEN------IEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 54
            Y+ F+ E    L+             +     ++  QL        +   +      
Sbjct: 713 LYNMFKNEGRSILESYVKENSLNENFAHVLVVLMRLRQLCCHPKLCMQIVDFASKFSH 770



 Score = 39.0 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 4/30 (13%), Positives = 14/30 (46%)

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I +++++E +L+    K  +       ++
Sbjct: 965 FIVEDSVEEKMLELQEKKRELMSNAFGKME 994


>gi|47225443|emb|CAG11926.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2182

 Score = 40.1 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 45/169 (26%)

Query: 22  AFNSASKTVKCLQLANGAVYYDE----------------------------EKHWKEVHD 53
           A    +      +L N                                            
Sbjct: 731 AHTHLACITALKKLCNHPALLYSAVQGRADGGSEEPSFYDGLAELFPESYSSGELSTADS 790

Query: 54  EKIKALEVII----EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPC 99
            K+  L  ++    + + +  ++V  ++   L  LQ                    +   
Sbjct: 791 GKLLVLSELLGAIRQLSPSDRVVVVSNYTKTLDLLQDLCVGLGYTFCRLDGHMPTGQRQR 850

Query: 100 TIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
            +  +N       L      + G GLNL  G + LV + + W+     Q
Sbjct: 851 LVDSFNSPFSQNFLFLLSSKAGGLGLNL-VGASHLVLYDIDWNPANDIQ 898



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 173  QNTIDELVLQRLRTKSTIQDLLLNALKK 200
              TI+E V QR  +K  +   +++  K 
Sbjct: 1008 AGTIEERVFQRQVSKQGLSGTVVDLGKA 1035


>gi|68249315|ref|YP_248427.1| ATP-dependent helicase HepA [Haemophilus influenzae 86-028NP]
 gi|81336260|sp|Q4QMI0|RAPA_HAEI8 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|68057514|gb|AAX87767.1| RNA polymerase associated protein homolog [Haemophilus influenzae
           86-028NP]
          Length = 923

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKA 87
            Q   G  +    +      ++KI  L   ++      I V           +    ++ 
Sbjct: 421 RQGVKGFPHRVYHQITLSEENDKIDWLINFLKLHRDEKIFVICQTAATAIQLEQILRERE 480

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-------LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +     +    I+                +    +    G N Q+  N++  F L  +
Sbjct: 481 AIRAAVFHEKMSIIERDRAAAYFADLENGAQVLLSSSIGSEGRNFQFAANLV-LFDLPTN 539

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            +  +Q I R+      + G KR V +Y   A+++
Sbjct: 540 PDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|194336504|ref|YP_002018298.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308981|gb|ACF43681.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 958

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               I E  + K  LL A       G+NLQ     ++ + L W+    +Q   R+    Q
Sbjct: 525 RKQKIDEMGKAKQRLLIAT-DCLSEGINLQQQFTAVLHYDLPWNPNRLEQREGRVDRFGQ 583

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             A   +   +Y   A N ID +VL  L  K
Sbjct: 584 P-APEVKTCLLY--GADNPIDGIVLDVLLRK 611


>gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 423

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    ++E+ EG  P+L A   +             +  + L  D E++   I R  
Sbjct: 289 PQGKRQRLLKEFQEGSYPILVATDVAARGLHI--PTVTHVFNYDLPQDPEDYVHRIGRTA 346

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                 +    A   Y     + I+E +
Sbjct: 347 RAGASGSAVSFACEDYAFSLPD-IEEYI 373


>gi|209881267|ref|XP_002142072.1| helicase  [Cryptosporidium muris RN66]
 gi|209557678|gb|EEA07723.1| helicase conserved C-terminal domain-containing protein
            [Cryptosporidium muris RN66]
          Length = 1691

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 14/136 (10%)

Query: 55   KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD--------PCTIQEWNE 106
            K +  +  I       II+   F   L  L  A        K                  
Sbjct: 1531 KGEYCDGFIRINEDDKIILFSDFMEALDLLCAALSINNVSFKKYNGGKNDYHILRDFIKF 1590

Query: 107  GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
                +L  +  + G G+ +    N ++F        +  Q I RI      + G  +   
Sbjct: 1591 PNNRVLICNTLNVGKGVTM-SVANHIIFVDPLLHEADELQAIGRI-----VRMGQVKTPH 1644

Query: 167  VYYLIAQNTIDELVLQ 182
            ++  I +++I++++++
Sbjct: 1645 IWRFIIKDSIEQVLIE 1660


>gi|9367860|emb|CAB97530.1| RAD26L hypothetical protein, alternatively spliced product; similar
           to (AF217319) putative repair and recombination helicase
           RAD26L [Mus musculus] [Homo sapiens]
          Length = 365

 Score = 40.1 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 17/134 (12%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A+                  + 
Sbjct: 202 KMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASG--------------LDYRR 246

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +  A   + G GLN   G N++V F   W+     Q
Sbjct: 247 LDGSTKSEERLKIVKEFNSTQDVNICLASTMAGGLGLNF-VGANVVVLFDPTWNPANDLQ 305

Query: 147 MIERIGVTRQRQAG 160
            I+R     +R+  
Sbjct: 306 AIDRTQTHCRRERD 319


>gi|119714078|ref|YP_919220.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525987|gb|ABL79357.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 953

 Score = 40.1 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              +    + E  E     +         G+NLQ   + +V + L W+   H+Q   R+ 
Sbjct: 524 PPAERERRVGELTELDGEHVLVATDCLSEGVNLQEHFSAVVHYDLCWNPTRHEQREGRVD 583

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK-STIQDL 193
              Q +    RAV +Y     N ID +VL  L  +   I   
Sbjct: 584 RYLQ-RKEVVRAVTLY--GEDNGIDGIVLDVLIRRHRAIAKA 622


>gi|292655877|ref|YP_003535774.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291370623|gb|ADE02850.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 470

 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEG 107
            +K+  L+ ++++ +   +IV      F  D++R             D+    +  +  G
Sbjct: 330 SKKLDTLDNLLKRHHDDRVIVFTANNDFAYDISREFILPCITHQTDTDERTEILDRFRSG 389

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +   + A       G++     N+ +  S      ++ Q + RI      +    +   +
Sbjct: 390 EYS-MLATSQVLDEGID-VPAANVGIILSGSASKRQYAQRLGRILRPTDDR----QPARL 443

Query: 168 YYLIAQNTIDELVLQRLRT 186
           Y +I  +T++  V QR R 
Sbjct: 444 YEIITTDTMETYVSQRRRE 462


>gi|72161129|ref|YP_288786.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914861|gb|AAZ54763.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 949

 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 10/126 (7%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGR-------TLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
              I   H+ ++  R                   +    +          +         
Sbjct: 487 CRYIPTAHYVAEELRQALPKNCAVEAVTSELPPREREDRVAHLAATDRRRVLVATDCLSE 546

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+NL      +V + + W+   H+Q   R+    Q +A   R V +Y   A N ID  V 
Sbjct: 547 GVNLHELFPAVVHYDMAWNPVRHEQREGRVDRFGQ-RAKRVRVVTLY--GADNGIDGPVR 603

Query: 182 QRLRTK 187
             L  K
Sbjct: 604 DVLLRK 609


>gi|145633818|ref|ZP_01789541.1| ATP-dependent helicase HepA [Haemophilus influenzae 3655]
 gi|144985321|gb|EDJ92156.1| ATP-dependent helicase HepA [Haemophilus influenzae 3655]
          Length = 923

 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKA 87
            Q   G  +    +      ++KI  L   ++      I V           +    ++ 
Sbjct: 421 RQGVKGFPHRVYHQIILSEENDKIDWLINFLKLHRDEKIFVICQTAATAIQLEQILRERE 480

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-------LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +     +    I+                +    +    G N Q+  N++  F L  +
Sbjct: 481 AIRAAVFHEKMSIIERDRAAAYFADLENGAQVLLSSSIGSEGRNFQFAANLV-LFDLPTN 539

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            +  +Q I R+      + G KR V +Y   A+++
Sbjct: 540 PDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|330960679|gb|EGH60939.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 614

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L     I    + W                R
Sbjct: 492 RREDWILDQVDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGWKVYTVQ------QAARR 545

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V +     +     LQ +  K  +   
Sbjct: 546 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQS 583


>gi|21242978|ref|NP_642560.1| plasmid-related protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108482|gb|AAM37096.1| plasmid-related protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 766

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 645 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ------QAARR 698

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G  + + V YL    +     L+ +  K  +   
Sbjct: 699 SWRIGQTQCIKVIYLGYAASSQMSCLKLMAQKIMVAQS 736


>gi|21358123|ref|NP_652607.1| RecQ4 [Drosophila melanogaster]
 gi|7295152|gb|AAF50477.1| RecQ4 [Drosophila melanogaster]
          Length = 1579

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 13/168 (7%)

Query: 32   CLQLANGAVYYDEEKHWK----EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
             LQL N   +   +            E+I        +    P          +    + 
Sbjct: 1083 LLQLLNSERFEPCQSIIIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEP 1142

Query: 88   FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
            +  G    +     + +   ++ ++ A  A              ++ +++  + E + Q 
Sbjct: 1143 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINK--PDIRAVIHYNMPRNFESYVQE 1200

Query: 148  IERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
            I R G             A       +   +  N+ID  V+++L  K 
Sbjct: 1201 IGRAGRDGLPSHCHLFLDAKGGDQSELRRHVYSNSIDRHVIRKLLQKI 1248


>gi|218709638|ref|YP_002417259.1| putative RNA polymerase-associated protein RapA [Vibrio splendidus
           LGP32]
 gi|218322657|emb|CAV18833.1| putative RNA polymerase-associated protein rapA (ATP-dependent
           helicase hepA) [Vibrio splendidus LGP32]
          Length = 1044

 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 91  GRTLDKDPCTIQEWNEGK----IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           G   ++       +        + +L A   +   G++LQ   N L+   + ++    +Q
Sbjct: 553 GMDHEEREDVKAAFQTHPEQSDVRILLAT-DAASEGIDLQNHCNCLIHLEIPYNPNVMEQ 611

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              RI    Q+     + + +++ +   +
Sbjct: 612 RNGRIDRHGQK----AKEILIWHPVDAGS 636


>gi|303280441|ref|XP_003059513.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459349|gb|EEH56645.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 939

 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 6/103 (5%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                  G T  +    +  +  G   +                  +++       +   
Sbjct: 504 FVNIARMGMTRAQRDAALAAFR-GDPDVAVLLLDRAAAEGLDLSFASVVFVMEPLDNTAL 562

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
            QQ++ R       + G +RAV V  L  + T +E +L     
Sbjct: 563 EQQVVSR-----AHRMGQRRAVKVEVLAMRETAEETLLDVQAE 600


>gi|303233872|ref|ZP_07320523.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495016|gb|EFL54771.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 153 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 212

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
              RI      Q      V ++  + +NT D  +  R  
Sbjct: 213 RSGRIVR----QGNENDKVNIFRYVTENTFDAYLWVRHE 247


>gi|307067514|ref|YP_003876480.1| DNA methylase [Streptococcus pneumoniae AP200]
 gi|306409051|gb|ADM84478.1| DNA methylase [Streptococcus pneumoniae AP200]
          Length = 2098

 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
               RI      Q      V ++  + +NT D  +  R  
Sbjct: 2062 RSGRIVR----QGNENDKVNIFRYVTENTFDAYLWVRHE 2096


>gi|325186727|emb|CCA21274.1| Fbox protein putative [Albugo laibachii Nc14]
 gi|325187107|emb|CCA21648.1| Fbox protein putative [Albugo laibachii Nc14]
          Length = 946

 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 70  PIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
            +IV   F   + R++ +  Q          G +  +    ++ +       +       
Sbjct: 591 KVIVFSQFKEHIWRIRVSCAQQGIRCAAFITGLSATERQRQLKLFRCDPTVQVLCLTDVG 650

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
            HGL+L +  + + F       E   + +    ++R  + G K AV V  L+   +++E 
Sbjct: 651 AHGLDLSFVSH-IFFAD-----EIWDKSLADQVISRAYRIGAKNAVVVEQLVMCGSLEE- 703

Query: 180 VLQRLRTK 187
           +L  L  K
Sbjct: 704 ILHGLHDK 711


>gi|269994446|dbj|BAI50387.1| chromodomain helicase DNA binding protein 2 [Leiolepis reevesii
           rubritaeniata]
          Length = 230

 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 45/166 (27%), Gaps = 28/166 (16%)

Query: 2   KQYHK--FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           KQY+K    R      +G         +  ++  +  N        +  +  +       
Sbjct: 66  KQYYKWILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCCLIKPPEENERENSQELLQS 125

Query: 53  ----DEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------- 96
                 K+  L+ ++   +     +++       L  L +         +          
Sbjct: 126 LIRSSGKLILLDKLLSRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 185

Query: 97  DPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
               +  +N              + G G+NL    + +V F   W+
Sbjct: 186 RKQALDHFNAEGSEDFCFLLSTRAGGLGINL-ASADTVVIFDSDWN 230


>gi|324118502|gb|EGC12395.1| DEAH ATP-dependent helicase [Escherichia coli E1167]
          Length = 907

 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           LL     +   GLNLQ  G ++    L W+    +Q + RI    Q +    + V +  L
Sbjct: 755 LLVVATDAACEGLNLQTLGTLIN-VDLPWNPSRLEQRLGRIKRFGQTR----KFVDMLNL 809

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           +   T DE V   L  +      +  +L
Sbjct: 810 VYSETQDEKVYNVLSERLRDTYDIFGSL 837


>gi|331089479|ref|ZP_08338378.1| hypothetical protein HMPREF1025_01961 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404847|gb|EGG84385.1| hypothetical protein HMPREF1025_01961 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           + N A      +      + +  AL  I+EK      I+ Y+F+ +L  L++ F      
Sbjct: 250 ITNAAGLCYIWRKIVNTDESRQLALLEIVEKHP--RAIIFYNFDYELELLKELFIPHADT 307

Query: 95  DKDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 I EWN  K          +      +   G N     + ++F+S  +  +  QQ
Sbjct: 308 MYFE--IAEWNGHKHQPIPKSESWVYLVQYNAGAEGWN-CIKTDTIIFYSQNYSYKIMQQ 364

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              RI           + ++ Y+L +++ ID  + + L+ K  
Sbjct: 365 SAGRIDRLNTP----FKDLYYYHLKSRSGIDLAISKALKEKKD 403


>gi|317057869|ref|YP_004106336.1| DNA mismatch repair protein MutS domain-containing protein
            [Ruminococcus albus 7]
 gi|315450138|gb|ADU23702.1| DNA mismatch repair protein MutS domain protein [Ruminococcus albus
            7]
          Length = 3387

 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 1/112 (0%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  ++     ++     I ++       G G N+Q     +    + W   ++ Q
Sbjct: 3014 YVHDAKNAEEKEKLFEKVRNRDIRVILGSTEKMGAGTNIQDYLYAIHHLDIPWRPSDYDQ 3073

Query: 147  MIERIGVT-RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               R      +        +  +    + T D    Q +  KS +   +L +
Sbjct: 3074 RNGRGERQGNKCADIGDGQILEFKYSCKGTFDAYRWQTIEGKSIMIKQVLTS 3125


>gi|291337005|gb|ADD96528.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C29]
          Length = 3493

 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 91   GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
            G    +     ++   G++ +      + G GLN+Q     L      W  ++ +Q   R
Sbjct: 2159 GMKSAEKRVFGEKMKNGQVRVAIGMTETLGTGLNIQLRMAALHHLDAPWRPQDIEQRNGR 2218

Query: 151  IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL---NALKK 200
            I             + +     + T+D  + Q+L  K+   + LL   + +++
Sbjct: 2219 ILRQG-NMYADLEGIEILTYGMERTLDAAIYQKLLIKAQATESLLRGGDDMRE 2270


>gi|253570892|ref|ZP_04848300.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839841|gb|EES67924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R            K    + E++     +L     S    +N+    ++++    W   +
Sbjct: 848 RPVFVVKGDVAFKKRQSVVTEFDSTVNGILVCTQQSLSSSVNIPTCNDVILESLQWNIPK 907

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL-LNALKKE 201
             Q         R  +   K    V+Y+  ++++++ ++  + TK  + + + +  +K++
Sbjct: 908 MEQFY------FRFIRLDSKEQKDVHYVTYKDSVEQNLMALVLTKERLNEFIKMGEVKEQ 961


>gi|157865532|ref|XP_001681473.1| SNF2/RAD54 related DNA helicase [Leishmania major strain Friedlin]
 gi|68124770|emb|CAJ02339.1| putative SNF2/RAD54 related DNA helicase [Leishmania major strain
           Friedlin]
          Length = 958

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            +     +          + +    +  ++ G+  +      +C  G++L       VF 
Sbjct: 480 QWARGHCKRAVCIDGRVPVQQRGDLLHAFHRGEAGIAVIGITACAVGISL-APAQCAVFC 538

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            L  D         R    R  + G +  V VYYL+
Sbjct: 539 ELPPDAA-----WMRQAEDRLHRPGQREEVVVYYLL 569


>gi|88859130|ref|ZP_01133771.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas tunicata D2]
 gi|88819356|gb|EAR29170.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas tunicata D2]
          Length = 964

 Score = 39.7 bits (91), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   +    +L         G N Q+  + LV F L  + +  +
Sbjct: 530 FHEGMSIIERDRAAAFFASEDNAAQVLLCS-EIGSEGRNFQF-AHTLVLFDLPLNPDLLE 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    V ++     NT  E++ +
Sbjct: 588 QRIGRLD-----RIGQTEDVQIHVPYFANTAQEVLYR 619


>gi|321464355|gb|EFX75364.1| hypothetical protein DAPPUDRAFT_107980 [Daphnia pulex]
          Length = 474

 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +I Q T++  +L+  + K  + + LL
Sbjct: 406 TFIQMITQGTVEVRILRLQQEKLAMANGLL 435


>gi|240277039|gb|EER40549.1| MIZ zinc finger protein [Ajellomyces capsulatus H143]
 gi|325094977|gb|EGC48287.1| MIZ zinc finger protein [Ajellomyces capsulatus H88]
          Length = 507

 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              K+   V  L+ ++T++ELV Q    K+   + ++  +K +
Sbjct: 223 LTQKKYFMVINLVRKHTVEELVNQLQARKTLSAEQVIREMKNK 265


>gi|268535802|ref|XP_002633036.1| Hypothetical protein CBG05712 [Caenorhabditis briggsae]
 gi|187034780|emb|CAP26597.1| hypothetical protein CBG_05712 [Caenorhabditis briggsae AF16]
          Length = 1659

 Score = 39.7 bits (91), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 98   PCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +       + +L    + C +GLN+  G N ++F           Q I RI      
Sbjct: 1534 KTIVDFDISDDVKILLCPLSLCANGLNMT-GANHIIFLDPPHLQSVLNQAIGRI-----N 1587

Query: 158  QAGFKRAVFVYYLIAQNTID 177
            + G +RA+ VY+L+ + ++D
Sbjct: 1588 RFGQRRAMRVYHLVVEGSLD 1607


>gi|60593908|pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593909|pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593910|pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593911|pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593912|pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
 gi|60593913|pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
           Domain
          Length = 494

 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           ++LY + +  + +A        +  +  +  V   E        D+  + +   +++   
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 361

Query: 69  APIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           + IIV  ++                     + +  K   +G +  +    + E+  G+  
Sbjct: 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L A  +    GL++    +++VF+                 + R+ + G      V  L
Sbjct: 422 VLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRS--------IQRRGRTGRHMPGRVIIL 471

Query: 171 IAQNTIDELVLQRLRTKSTIQDL 193
           +A+ T DE      R K  I   
Sbjct: 472 MAKGTRDEAYYWSSRQKEKIMQE 494


>gi|145642183|ref|ZP_01797751.1| ATP-dependent helicase HepA [Haemophilus influenzae R3021]
 gi|145273107|gb|EDK12985.1| ATP-dependent helicase HepA [Haemophilus influenzae 22.4-21]
          Length = 634

 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKA 87
            Q   G  +    +      ++KI  L   ++      I V           +    ++ 
Sbjct: 421 RQGVKGFPHRVYHQITLSEENDKIDWLINFLKLHRDEKIFVICQTAATAIQLEQILRERE 480

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-------LFAHPASCGHGLNLQYGGNILVFFSLWWD 140
             +     +    I+                +    +    G N Q+  N++  F L  +
Sbjct: 481 AIRAAVFHEKMSIIERDRAAAYFADLENGAQVLLSSSIGSEGRNFQFAANLV-LFDLPTN 539

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            +  +Q I R+      + G KR V +Y   A+++
Sbjct: 540 PDLLEQCIGRLD-----RIGQKRDVQIYVPCAKDS 569


>gi|124028136|ref|YP_001013456.1| superfamily II DNA/RNA helicase [Hyperthermus butylicus DSM 5456]
 gi|123978830|gb|ABM81111.1| DNA or RNA helicases of superfamily II [Hyperthermus butylicus DSM
           5456]
          Length = 540

 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 37/212 (17%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           K+Y K + E      G  +E    A+     +  K LQL        + +    +   K+
Sbjct: 350 KKYEKLKNEYKVLSAGRKVEELVKAASAGDERAKKALQL------LSQMRLLVALSRAKL 403

Query: 57  KALEVIIEKA--NAAPIIVAYHFNSDLARLQKA-----FPQGRTLDKDPCTIQEWNEGKI 109
              + I++      + I+V   +     R+ K              +     + +  G+ 
Sbjct: 404 AEAKRIVDSELAKGSKILVFTQYIEQAERVGKILGAPVITSKTDKARRALAFELFKRGRY 463

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV-- 167
            +L               G   +        L        R  + R  +    +   V  
Sbjct: 464 RVLVLT----------TVGDEGIDVPDANVGLILSGTSSRRQFIQRLGRLLRPQPGKVSK 513

Query: 168 -YYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
            YY+  + T ++ +L+       I + +L ++
Sbjct: 514 LYYIAVRGTAEQAILK------KIAEEVLASM 539


>gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus]
 gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus]
          Length = 1393

 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
             +    +      ++E I        P+I    F            +G T  +    ++
Sbjct: 459 CHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFV---GHASGKNTKGFTQKEQLQVVR 515

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G    L         GL++    ++++ F          Q + R G  RQ +    
Sbjct: 516 QFRDGGYNTLV-STCVGEEGLDI-GEVDLIICFDAQKSPIRLIQRMGRTGRKRQGR---- 569

Query: 163 RAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNALKKETIHV 205
               +  ++A+   +E    Q    K  I   +  +  ++ + +
Sbjct: 570 ----IVVILAEG-REERTYNQSQSNKKNIYKAI--SGNRQVLRL 606


>gi|330994947|ref|ZP_08318868.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
 gi|329757931|gb|EGG74454.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
          Length = 1699

 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 R          + N G+  +L    A+ G G+N Q     L    + W + +  Q
Sbjct: 1326 FMQHYRKSAAKQKLFGDLNAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLVSDIIQ 1385

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               RI      Q      + +Y    Q ++D    Q L  K     L ++  +
Sbjct: 1386 REGRIER----QGNQHAEIELYAYAQQGSVDATNWQLLERKQRFIGLAMSGDR 1434


>gi|154276906|ref|XP_001539298.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414371|gb|EDN09736.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 476

 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              K+   V  L+ ++T++ELV Q    K+   + ++  +K +
Sbjct: 223 LTQKKYFMVINLVRKHTVEELVNQLQARKTLSAEQVIREMKNK 265


>gi|317131921|ref|YP_004091235.1| hypothetical protein Ethha_0948 [Ethanoligenens harbinense YUAN-3]
 gi|315469900|gb|ADU26504.1| hypothetical protein Ethha_0948 [Ethanoligenens harbinense YUAN-3]
          Length = 404

 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +  +      +  +G++ +L    +  G G N+Q    ++      W   +  Q
Sbjct: 8   FIHDANSETQKAELFAKVRKGQVRILLGSTSKMGAGTNVQERLAVIHHADCPWRPRDLTQ 67

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                  +  RQ      + ++  + + T D      + +K      ++
Sbjct: 68  R----DGSGIRQGNLFETIKIFRYVTKGTFDAYNWSLVESKQKFISQVV 112


>gi|170516811|gb|ACB15213.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote DeepAnt-15E7]
          Length = 596

 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             + +  +    G T  +    + ++  G   +L A  +    GL++    ++++F+   
Sbjct: 394 QFVGQSSREGRDGLTPKQQIERLDKFRSGSANILVAT-SVGEEGLDIPS-ADLVIFYEPV 451

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                     E   + R+ + G  R   V  LIA++T DE        +       ++ +
Sbjct: 452 SS--------EIRTIQRRGRTGRHREGEVVVLIAEDTRDEGARASAERREEFMQRAVHRV 503

Query: 199 KKETIH 204
           +++ + 
Sbjct: 504 RRKLLR 509


>gi|291037268|ref|ZP_06568232.1| DNA methylase/helicase SNF2 [Gluconacetobacter xylinus NBRC 3288]
          Length = 1699

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 4/113 (3%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 R          + N G+  +L    A+ G G+N Q     L    + W + +  Q
Sbjct: 1326 FMQHYRKSAAKQKLFGDLNAGRKRILIGSTATMGTGVNAQQRLKALHHLDVPWLVSDIIQ 1385

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               RI      Q      + +Y    Q ++D    Q L  K     L ++  +
Sbjct: 1386 REGRIER----QGNQHAEIELYAYAQQGSVDATNWQLLERKQRFIGLAMSGDR 1434


>gi|238880607|gb|EEQ44245.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1250

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 58   ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
               + + +      I+  +F + + R Q  +                N G I  L  + A
Sbjct: 1088 YYLIELLEILKIRHIIYANFITPIKRAQNLYDFSNYDVDKEE-----NNGGI-CLVMNIA 1141

Query: 118  SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               HGLN+    +I        +    Q+ IE   + R  + G  + V V  L  +  +D
Sbjct: 1142 HSSHGLNIIAATHIYFI-----NP-VKQESIEAQAIKRAHRIGQTKEVTVKTLYLKG-VD 1194

Query: 178  E-LVLQRLRTKS---TIQDLLLNALKKE 201
            E  +L R   K           +A +KE
Sbjct: 1195 ELKILSR-NEKLKNVKNDKESFDAKEKE 1221


>gi|302797108|ref|XP_002980315.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
 gi|300151931|gb|EFJ18575.1| hypothetical protein SELMODRAFT_444519 [Selaginella moellendorffii]
          Length = 2030

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 13/109 (11%)

Query: 70   PIIVAYHFNSDLARLQK----AFPQGRTLDKDPCT---IQEWNEGKIPLLFAHPASCGHG 122
             I+V   +   L  L+            L +       I E+ +  + ++        +G
Sbjct: 1112 KILVFSTWQEVLDLLEHALKSNKLSWVRLKQRRQMGSSILEFKKENVQVMLLPIQHGANG 1171

Query: 123  LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
            LNL      ++      +       +E   + R  + G +    V+  I
Sbjct: 1172 LNL-IEAQHVILVEPLLNPA-----VEAQAINRVHRIGQRLKTLVHRFI 1214


>gi|330508988|ref|YP_004385416.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929796|gb|AEB69598.1| DEAD/DEAH box helicase domain protein [Methanosaeta concilii GP-6]
          Length = 762

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           +I      P I A  F     +  +A  +G +  K    +Q +  G+  +L A  +    
Sbjct: 381 LIRFLKEDPKIKAVRFV---GQSSRADDEGLSQKKQAEILQRFRAGEYNVLIAT-SVGEE 436

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           G+++    ++++F+          Q   R G  R  +        V  L+A+ T DE   
Sbjct: 437 GIDIPAT-DMVLFYEPVPSEIRSIQRKGRTGRARSGR--------VVVLMARGTRDEAYY 487

Query: 182 QRLRTKSTIQDL 193
                K    + 
Sbjct: 488 WISDRKEKTMNK 499


>gi|301114117|ref|XP_002998828.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110922|gb|EEY68974.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1702

 Score = 39.3 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 55/204 (26%), Gaps = 36/204 (17%)

Query: 26  ASKTVKCLQLAN-----------GAVYYDEEKHWKEVHDEKIKALE---VIIEKANAAPI 71
               ++  ++ N           G                K++ LE     +       +
Sbjct: 660 LQLLLRLREICNCVDLVNDMDKLGHADMRLLTSC----SAKLQVLEPLLRRLLLQEGKKV 715

Query: 72  IVAYHFNSDLARLQKA---------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122
           ++   FN+    L+              G    +        +   + +  A        
Sbjct: 716 VIYCQFNAMFPVLEFFLSLLDINYVRVTGSVAMQRRALCHFADRAVVRVALASTRLSMSN 775

Query: 123 LN---LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
                  +G   ++     W+     ++        +   G    + VY L  +NTI+  
Sbjct: 776 GRRAVSVFGSEAIIVVDGDWNATCDAKLR---ASWAKMAVGGADTLPVYRLHCENTIEAS 832

Query: 180 VLQRLRTKSTIQDLLLNALKKETI 203
           +L+   +   + + +   +  + +
Sbjct: 833 LLRVGAS---LTEKVFGEMSPQEL 853


>gi|153815156|ref|ZP_01967824.1| hypothetical protein RUMTOR_01381 [Ruminococcus torques ATCC 27756]
 gi|145847724|gb|EDK24642.1| hypothetical protein RUMTOR_01381 [Ruminococcus torques ATCC 27756]
          Length = 412

 Score = 39.3 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTL 94
           + N A      +      + +  AL  I+EK      I+ Y+F+ +L  L++ F      
Sbjct: 250 ITNAAGLCYIWRKIVNTDESRQLALLEIVEKHP--RAIIFYNFDYELKLLKELFIPYADT 307

Query: 95  DKDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 I EWN  K          +      +   G N     + ++F+S  +  +  QQ
Sbjct: 308 MYFE--IAEWNGHKHQPIPESKNWVYLVQYNAGAEGWN-CIKTDTIIFYSQNYSYKIMQQ 364

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
              RI           + ++ Y+L +++ ID  + + L+ K  
Sbjct: 365 SAGRIDRLNTP----FKDLYYYHLKSRSGIDLAISKALKEKKD 403


>gi|154494255|ref|ZP_02033575.1| hypothetical protein PARMER_03605 [Parabacteroides merdae ATCC
           43184]
 gi|154086117|gb|EDN85162.1| hypothetical protein PARMER_03605 [Parabacteroides merdae ATCC
           43184]
          Length = 949

 Score = 39.3 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +  +       +     S   G+NLQ+  ++LV + + W+ +  +Q I R    
Sbjct: 485 DRKQALVDHFRTDA--EIMIATESGAEGINLQF-CSLLVNYDMPWNPQRIEQRIGRCHRY 541

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
            Q+              A    D  V + L  K  + + +  +
Sbjct: 542 GQKFDVVVVNFVNQLNYA----DCRVYELLNEKFNLFEGVFGS 580


>gi|260893204|ref|YP_003239301.1| helicase domain protein [Ammonifex degensii KC4]
 gi|260865345|gb|ACX52451.1| helicase domain protein [Ammonifex degensii KC4]
          Length = 953

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS------- 79
           ++  +  Q A  A      +   +V        E++         +V   + +       
Sbjct: 446 AQRQRLRQFARQAQALCGSEEDTKVVRCAQVVSELL---REGYQPVVWCRYVATAEYVAG 502

Query: 80  DLARLQKAFPQ---------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130
           +L R                 R  +     +   +     +L A       G+NLQ    
Sbjct: 503 ELRRRLAPAFPDLAVEAVTGARPEEDRRGAVLALSRHPRRVLVAT-DCLSEGVNLQDYFT 561

Query: 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTK 187
            +V + L W+    +Q   R+    Q +A   +AV +Y      N +D  VL  L  K
Sbjct: 562 AVVHYDLPWNPNRLEQREGRVDRFGQ-RAKKVKAVLLYGR---DNPVDGAVLDVLLRK 615


>gi|229847516|ref|ZP_04467611.1| ATP-dependent helicase HepA [Haemophilus influenzae 7P49H1]
 gi|229809579|gb|EEP45307.1| ATP-dependent helicase HepA [Haemophilus influenzae 7P49H1]
          Length = 923

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 19/184 (10%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + Q+    +L    I+   +     +   Q   G  +    +      ++KI  L   +
Sbjct: 392 DEEQQRARQELIQALIDRHGTGRMLFRNTRQGGEGFPHRVYHQITLSEENDKIDWLIDFL 451

Query: 64  EKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL------- 111
           +      I+V           +    ++   +     +    I+                
Sbjct: 452 KLHRDEKILVICQTAATAIQLEQILREREAIRAAVFHEKMSIIERDRAAAYFADLENGAQ 511

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +    +    G N Q+  N++  F L  + +  +Q I R+      + G KR V +Y   
Sbjct: 512 VLLSSSIGSEGRNFQFATNLV-LFDLPTNPDLLEQCIGRLD-----RIGQKRDVQIYVPC 565

Query: 172 AQNT 175
           A+++
Sbjct: 566 AKDS 569


>gi|78190759|gb|ABB29701.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Aphrocallistes vastus]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 50/202 (24%), Gaps = 63/202 (31%)

Query: 3   QYHKFQR-----ELYCDLQGEN------------IEAFNSASKTVKCLQLANGAVYYDEE 45
            Y +F R     ++   ++ +              +  +         ++ N        
Sbjct: 229 VYEEFSRTEGNNQILALIKDKEPKKENPEKQFDQSKKSHIFQALQYPRKICNHPSLVIGN 288

Query: 46  KHWKEV----------------HDEKIKALEVIIEKANA----------------APIIV 73
              +                  H  K+ AL+ ++                       +++
Sbjct: 289 YPTQFDVRKWLKDQNTSLEDVSHSCKLVALKQLLIDCCNSIHSHNNETLIPSLSQHRVLI 348

Query: 74  AYHFNSDLARLQKAFPQ------------GRTLDKDPCTIQEWN-EGKIPLLFAHPASCG 120
                  L  +Q    +               +      +  +N +  I +L       G
Sbjct: 349 FCQLKHMLDLIQAMIGRDLPQLSYLRLDGSVPVQNRMNIVNTFNSDPSIDILLLTTHVGG 408

Query: 121 HGLNLQYGGNILVFFSLWWDLE 142
            GL L  G ++++F    W+  
Sbjct: 409 LGLTLT-GADVVIFVDHDWNPM 429


>gi|261403402|ref|YP_003247626.1| helicase domain protein [Methanocaldococcus vulcanius M7]
 gi|261370395|gb|ACX73144.1| helicase domain protein [Methanocaldococcus vulcanius M7]
          Length = 994

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             I +  E    +L A       GLNLQ   ++L+ +   W   + +Q I R+      +
Sbjct: 450 ENINKKFEDCGKILLAT-DVASEGLNLQ-IASVLINYDSPWSPIKLEQRIGRVW-----R 502

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
            G ++ V VY +   N +D  +L  L  K       L+
Sbjct: 503 LGQEKDVSVYNIFLSNRMDLELLNNLYKKIMNIKNALD 540


>gi|76802558|ref|YP_327566.1| helicase-like protein [Natronomonas pharaonis DSM 2160]
 gi|76558423|emb|CAI50014.1| helicase homolog [Natronomonas pharaonis DSM 2160]
          Length = 469

 Score = 39.3 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 11/139 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEG 107
            +K+  L+ ++++      I+      F  D+++             D+    ++ +  G
Sbjct: 329 TKKLDTLDNLLKRHYDDRAIIFTANNDFAYDISQEFVVPCITHQTETDERTAILERFRTG 388

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  +L                 N+ +  S      ++ Q + RI      +    +   +
Sbjct: 389 EYSMLVTSQVL--DEGIDVPAANVGIILSGSASKRQYAQRLGRILRPTDGR----QPARL 442

Query: 168 YYLIAQNTIDELVLQRLRT 186
           Y +IA++T++  V +R R 
Sbjct: 443 YEIIAEDTVETYVSERRRQ 461


>gi|194098611|ref|YP_002001673.1| Yea [Neisseria gonorrhoeae NCCP11945]
 gi|193933901|gb|ACF29725.1| Yea [Neisseria gonorrhoeae NCCP11945]
          Length = 827

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 632 LFHTEPQFDEEKISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 691

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 692 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 750

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 751 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 805

Query: 205 V 205
           +
Sbjct: 806 I 806


>gi|300113246|ref|YP_003759821.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539183|gb|ADJ27500.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 431

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    +  + +G  P+L A   +             +  + L  D E++   I R  
Sbjct: 289 PQGKRQRLLTAFQDGIYPILVATDVAARGLH--VSTVTHVFNYDLPQDPEDYVHRIGRTA 346

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                 +    A   Y     + I+E +
Sbjct: 347 RAGASGSAVSFACEDYAFSLPD-IEEYI 373


>gi|331227997|ref|XP_003326666.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305656|gb|EFP82247.1| chromodomain helicase hrp1 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 78

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                +E   + R  + G +  + V      N+I+  + Q  R K+ + 
Sbjct: 4   TWNPAVEEQAIDRLYRIGQQEQIQVVRYCVTNSIEGHIFQIKRRKAELA 52


>gi|312078996|ref|XP_003141983.1| hypothetical protein LOAG_06399 [Loa loa]
 gi|307762856|gb|EFO22090.1| hypothetical protein LOAG_06399 [Loa loa]
          Length = 387

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
            + LL    +S   GLNL    N ++F     D+ +  Q I RI      + G K+A+ V
Sbjct: 287 DLKLLVMPMSSGARGLNLTA-ANNIIFVEPQMDISQIAQAIGRID-----RIGQKKAMMV 340

Query: 168 YYLIAQNTIDELVL 181
           ++ +   +I+E + 
Sbjct: 341 HHFVVYGSIEEQIY 354


>gi|115531782|ref|YP_784308.1| NPH-1 [Crocodilepox virus]
 gi|115521135|gb|ABJ09009.1| NPH-1 [Crocodilepox virus]
          Length = 626

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 79/223 (35%), Gaps = 29/223 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE 64
            +  R+   + +     A    +   +   LA+      E  +    +  K     VII+
Sbjct: 316 DQLGRDFRTEFEDRRFSAG-GLALLTRGEPLAD--AGDLELYNSLYAYSCKFVRACVIIK 372

Query: 65  KANAAPIIVAYHFNSD-----------LARLQKAFPQGRTLDKDPCTIQEWNEGK----- 108
           ++     +V   F              L  +       RT +     + E+N  +     
Sbjct: 373 RSAG-KCLVFEPFVKFSGISVLLEYFRLFEISHVEFSSRTRETRTQLVAEFNAPENTNGE 431

Query: 109 -IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFKRAV 165
            I       AS   G++     N ++   + W+    +Q+I R             +R +
Sbjct: 432 LIKACVFS-ASGNEGISFMSI-NDILILDMTWNESSLKQIIGRALRLNSHVNNVSDRRYL 489

Query: 166 FVYYLIA--QN--TIDELVLQRLRTKSTIQDLLLNALKKETIH 204
            V++++A   +  ++D+ +L  ++ KS   + L + LK+ +I 
Sbjct: 490 NVHFIVATLADGLSVDQELLDIIQQKSREFNQLYSVLKRASIE 532


>gi|91079778|ref|XP_967578.1| PREDICTED: similar to rothmund-thomson syndrome DNA helicase recq4
           [Tribolium castaneum]
          Length = 1368

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L+   +A+  G    +     + +  G++ ++ A  A              ++ +++  +
Sbjct: 789 LSYQAEAYHAGLAASRRRTVQKAFMSGELRIVVATVAFGMGINK--SDIRAVIHYNMPKN 846

Query: 141 LEEHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            E + Q I R G             A       +   I  N+ID  V+++L  K  +
Sbjct: 847 FESYVQEIGRAGRDGLTAHCHLFLDAKGNDENELRRHIFANSIDRHVIRKLLQKIFL 903


>gi|298675601|ref|YP_003727351.1| ERCC4 domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288589|gb|ADI74555.1| ERCC4 domain protein [Methanohalobium evestigatum Z-7303]
          Length = 759

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 67/213 (31%), Gaps = 36/213 (16%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV 61
           K Y +  RE       +   A    ++     Q+       +      ++   +    + 
Sbjct: 307 KYYDRLDREAGLKSGSK---ASKRLAEDPYMQQI--SHRLKECSSEHPKLEMTREIVSKQ 361

Query: 62  IIEKANAAPIIVAYHFN-------------------SDLARLQKAFPQGRTLDKDPCTIQ 102
            +E+   +  IV  ++                      + +  K   +G T  +    I 
Sbjct: 362 -LEENPDSRAIVFTNYRDTAEMLANLLSEMDGVYPIRFVGQSSKYNDKGLTQKQQVEIID 420

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++  G+  ++    +    GL++    ++++F+          Q   R    ++ +    
Sbjct: 421 KFKTGEYNVIV-STSVAEEGLDIPST-DLVLFYEPVPSEIRSIQRKGRTARKQEGR---- 474

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTK-STIQDLL 194
               V  L+ + T DE       +K   +QD +
Sbjct: 475 ----VVVLVTKETRDEAYYWSSVSKERKMQDNM 503


>gi|327401630|ref|YP_004342469.1| helicase domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317138|gb|AEA47754.1| helicase domain protein [Archaeoglobus veneficus SNP6]
          Length = 746

 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            +I +      I    F     + ++   +G +  +   T++ +  G+I +L A  +   
Sbjct: 377 EVIVEELKKEGIPVSRFV---GQAKRFEKKGMSQKEQVETLERFRSGEIKVLVAT-SVGE 432

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            GL++    +++VF+             E   + R+ + G  R   +  LI + T DE  
Sbjct: 433 EGLDIPST-DLVVFYEAVPS--------EIRAIQRKGRTGRAREGRIVVLITKGTRDEAY 483

Query: 181 LQRLRTKSTIQ 191
                 K    
Sbjct: 484 YWASMRKEKAM 494


>gi|240142783|ref|YP_002967296.1| Helicase domain protein [Methylobacterium extorquens AM1]
 gi|240012730|gb|ACS43955.1| Helicase domain protein [Methylobacterium extorquens AM1]
          Length = 919

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D     ++   E    LL A       G+NLQ   + +V + L W+   HQQ   R+ 
Sbjct: 496 VPDDRRDRVEGMAEEPQRLLVAT-DCLSEGINLQMLFDAVVHYDLSWNPTRHQQREGRVD 554

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
              Q     K  +    L   ++ ID  VL  +  K+ 
Sbjct: 555 RFGQPAPLVKSML----LFGSDSLIDSAVLSVILRKAE 588


>gi|163849725|ref|YP_001637768.1| helicase domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163661330|gb|ABY28697.1| helicase domain protein [Methylobacterium extorquens PA1]
          Length = 919

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             D     ++   E    LL A       G+NLQ   + +V + L W+   HQQ   R+ 
Sbjct: 496 VPDDRRDRVEGMAEEPQRLLVAT-DCLSEGINLQMLFDAVVHYDLSWNPTRHQQREGRVD 554

Query: 153 VTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKST 189
              Q     K  +    L   ++ ID  VL  +  K+ 
Sbjct: 555 RFGQPAPLVKSML----LFGSDSLIDSAVLSVILRKAE 588


>gi|311977733|ref|YP_003986853.1| putative transcription termination factor [Acanthamoeba polyphaga
           mimivirus]
 gi|82000285|sp|Q5UQU2|YR350_MIMIV RecName: Full=Putative ATP-dependent RNA helicase R350
 gi|55416969|gb|AAV50619.1| putative transcription termination factor, VV D6R helicase
           [Acanthamoeba polyphaga mimivirus]
 gi|308204776|gb|ADO18577.1| putative transcription termination factor [Acanthamoeba polyphaga
           mimivirus]
          Length = 817

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 23/153 (15%)

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGK------IPLLFAHPASCGH 121
             +I    F      +      GR   KD   I+  +N+          ++   P++   
Sbjct: 527 FRLIGFNDFTIAREYMGYCEYHGRIDPKDRVRIKNMFNDKNNVYGNKCKVIMLSPSATEG 586

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVFVYYLIA------- 172
              L            +W     QQ+I R       +     +R V +Y           
Sbjct: 587 IQLL--DIRQEHIMEPYWTEVRIQQVIGRGVRQCSHRDLPMSERIVDIYRYKVIKPENLD 644

Query: 173 -QNTI----DELVLQRLRTKSTIQDLLLNALKK 200
             +T+    DE V  + ++K+ + +  L A+K+
Sbjct: 645 PDDTVRQSTDEYVEDQAKSKANLIESFLGAMKE 677


>gi|270004900|gb|EFA01348.1| RecQ4 [Tribolium castaneum]
          Length = 1373

 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           L+   +A+  G    +     + +  G++ ++ A  A              ++ +++  +
Sbjct: 794 LSYQAEAYHAGLAASRRRTVQKAFMSGELRIVVATVAFGMGINK--SDIRAVIHYNMPKN 851

Query: 141 LEEHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
            E + Q I R G             A       +   I  N+ID  V+++L  K  +
Sbjct: 852 FESYVQEIGRAGRDGLTAHCHLFLDAKGNDENELRRHIFANSIDRHVIRKLLQKIFL 908


>gi|224008282|ref|XP_002293100.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971226|gb|EED89561.1| chromodomain-helicase [Thalassiosira pseudonana CCMP1335]
          Length = 698

 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 37/172 (21%), Gaps = 38/172 (22%)

Query: 4   YHKFQRELYCDL--QGENIEAFNSASKTVKCLQLANGAVYYDE----------------- 44
           Y          L    +   A +  +  ++  +  N                        
Sbjct: 524 YKAIYERNTSFLYKGSKPSNAPSLMNIMMELRKCCNHPFLIRGAEDRIIGNDETAYRPID 583

Query: 45  ----EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLDK-- 96
                         K   L  ++ K       +++       L  LQ+         +  
Sbjct: 584 YAKLTGEQLVKSSGKFVLLSKLLPKLYDGGHKVLIFSQMVRVLDLLQELLQLKHYRYERL 643

Query: 97  --------DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLW 138
                       +  +        ++     + G GLNL    + ++ F   
Sbjct: 644 DGSTSASSRNAAVDRFKRESFKRFVMLLSTRAGGLGLNLTA-ADTVIIFDRS 694


>gi|237801927|ref|ZP_04590388.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024785|gb|EGI04841.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 752

 Score = 39.0 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|406004|gb|AAD10571.1| unknown [Mycoplasma genitalium]
          Length = 101

 Score = 39.0 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 2  KQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
          K Y K + +   +++  +   A N  S  +K   + +      +        + K  A  
Sbjct: 12 KLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICS---LVKDNDVNDFEDNSKANAAL 68

Query: 61 VIIEK--ANAAPIIVAYHFNSDLARLQK 86
           II +   N   +I+   F   ++  ++
Sbjct: 69 NIIYEALENKRKVILFTQFLDVISCFKQ 96


>gi|33359440|ref|NP_877878.1| ERCC4-like helicase/ERCC4-type nuclease [Pyrococcus horikoshii OT3]
 gi|3258336|dbj|BAA31019.1| 650aa long hypothetical ATP-dependent RNA helicase [Pyrococcus
           horikoshii OT3]
          Length = 650

 Score = 39.0 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 68/213 (31%), Gaps = 31/213 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y    + LY + +  +  A        +  +     +   E        +     + 
Sbjct: 300 LRVY---LKRLYEEAKAGSTRASKELFLDKRMKKALALLIQAKELGIDHPKMEVLKGLIR 356

Query: 61  VIIEKANAAPIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQ 102
             +++   + IIV  ++                     + +  +   +G +  +    + 
Sbjct: 357 EQLKRKENSKIIVFTNYRETAKKVVEELMKDGIKARRFVGQASRENDRGMSQKEQKLILD 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +  +L A  +    GL++    ++++F+          Q        R+ + G +
Sbjct: 417 AFARSEFNVLVAT-SVGEEGLDVPEV-DLVIFYEPVPSAIRSVQ--------RRGRTGRQ 466

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +   V  L+AQ T DE      R K  I    +
Sbjct: 467 KPGRVVILMAQGTRDEAYYWSSRQKEKIMRETI 499


>gi|225554691|gb|EEH02987.1| MIZ zinc finger protein [Ajellomyces capsulatus G186AR]
          Length = 515

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              K+   V  L+ ++T++ELV Q    KS   + ++  +K +
Sbjct: 247 LTQKKYFMVINLVRKHTVEELVNQLQARKSLSAEQVIREMKNK 289


>gi|225435359|ref|XP_002282476.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2356

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 44/168 (26%), Gaps = 17/168 (10%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQ- 90
            +  +     D                  + I     +          D  R +      
Sbjct: 818 RKCCDHPYIVDLSLQSFLTKGLPEIEYLDVGINSIGGSGRDSIGDILDDFLRQRFGQDSY 877

Query: 91  -----GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
                G    +    + ++N  +    +      +C   + L    + ++ F   W+   
Sbjct: 878 ERVDGGGVPSRKQAALNKFNNKESGRFVFLLEIRACLSSIKL-SSVDTIIIFDSDWNPVN 936

Query: 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             + + +I +           + ++ L +  T++E     +  K  + 
Sbjct: 937 DLRALNKITID-----SQFEKIKLFRLYSPFTVEEK--SLILAKHDMA 977


>gi|331235570|ref|XP_003330445.1| DNA repair protein rad-5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309309435|gb|EFP86026.1| DNA repair protein rad-5 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1289

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 46   KHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQGR--------- 92
            K    V   K++AL   + K          +V   F   L  +++   + R         
Sbjct: 1172 KRNDFVSSTKLEALIDHLIKARQTDPGFSAVVFSQFTGFLDLIEQVLKRDRFRFVRLDGT 1231

Query: 93   -TLDKDPCTIQEWNEGKIP-LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
             +  K    ++ +N+ + P +L       G GLNL    N +     WW+     Q IE
Sbjct: 1232 LSTRKRKKALETFNDPRKPCILVCSLKVAGVGLNL-IKANRVYMMDTWWNEAIENQAIE 1289


>gi|193083970|gb|ACF09645.1| ATP dependent RNA helicase [uncultured marine crenarchaeote
           AD1000-56-E4]
          Length = 497

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             G   +K   T+Q + +G    L A       GL++    N+++F+          Q  
Sbjct: 383 QTGLKQEKQIETVQRFRDGVTKALVAT-RVGEEGLDI-SEVNLVIFYDNVPSSIRFIQRK 440

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            R G     +           LIA++TIDE      + K      + + + K
Sbjct: 441 GRTGRKDTGRL--------VVLIAKDTIDEAYYWIGKRKVKSASNMADKITK 484


>gi|66044710|ref|YP_234551.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. syringae B728a]
 gi|63255417|gb|AAY36513.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 752

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|223934433|ref|ZP_03626354.1| helicase domain protein [bacterium Ellin514]
 gi|223896896|gb|EEF63336.1| helicase domain protein [bacterium Ellin514]
          Length = 952

 Score = 39.0 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 24/179 (13%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHF-----------NS 79
            QLAN A   +     +  HD K++A    +     +    +V   +            S
Sbjct: 443 RQLANFARQLESLSGAQ--HDGKLEAAAKTLAEWLRDGFQPVVFCRYLATARYVGEQLRS 500

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKI----PLLFAHPASCGHGLNLQYGGNILVFF 135
            L    K         +DP  ++      +      L         G+NLQ     ++ +
Sbjct: 501 LLKAKFKDLRVEVVTSEDPDDVRRQRVNDLGKVPRRLLVATDCLSEGINLQESFTAVLHY 560

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT-IDELVLQRLRTKSTIQDL 193
            L W+    +Q   R+    Q        V  Y L  ++  +D LVL  +  K      
Sbjct: 561 DLPWNPNRLEQREGRVDRFGQT----AEYVKAYLLFGRDNPVDGLVLGVILEKIRQIRR 615


>gi|256821200|ref|YP_003142399.1| helicase domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256799180|gb|ACV29834.1| helicase domain protein [Anaerococcus prevotii DSM 20548]
          Length = 2098

 Score = 39.0 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
               +  T  +      +   G++ +L       G G N+Q     L    + W   + +Q
Sbjct: 2002 FIHEADTDKQKDELFSKVRRGEVRVLLGSTQKMGAGTNVQNKLIALHDLDVPWRPSDLEQ 2061

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
               RI      Q      V ++  + +NT D
Sbjct: 2062 RSGRIVR----QGNENDRVNIFRYVTENTFD 2088


>gi|242229275|ref|XP_002477702.1| predicted protein [Postia placenta Mad-698-R]
 gi|220722338|gb|EED77099.1| predicted protein [Postia placenta Mad-698-R]
          Length = 592

 Score = 39.0 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
              NIL+     W  ++  Q+I R+   R       + V VY LIA+NT D  +      
Sbjct: 191 ACANILIIIDTLWSAQDDSQLIGRLWRQR-----QLKLVHVYRLIARNTSDVFLNNISFD 245

Query: 187 KSTIQDLLLNALKK 200
           KS + +  + + + 
Sbjct: 246 KSIMHNAFMGSSRA 259


>gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus]
          Length = 1370

 Score = 39.0 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
             +    +      ++E I        P+I    F            +G T  +    ++
Sbjct: 427 CHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFV---GHASGKNTKGFTQKEQLQVVR 483

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G    L         GL++    ++++ F          Q + R G  RQ +    
Sbjct: 484 QFRDGGYNTLV-STCVGEEGLDI-GEVDLIICFDAQKSPIRLIQRMGRTGRKRQGR---- 537

Query: 163 RAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNALKKETIHV 205
               +  ++A+   +E    Q    K  I   +  +  ++ + +
Sbjct: 538 ----IVVILAEG-REERTYNQSQSNKKNIYKAI--SGNRQVLRL 574


>gi|288928141|ref|ZP_06421988.1| DEAD/DEAH box helicase:Helicase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330975|gb|EFC69559.1| DEAD/DEAH box helicase:Helicase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 1082

 Score = 39.0 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 1/108 (0%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLF 113
           K+   +   +K N    I     +   A         +  +K    I+E +N    P + 
Sbjct: 851 KVDDAQSFGKKENKENNIRYSMRSHFAAPFGVNAESSQGSEKRATDIREAFNSPFKPFVL 910

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           A  +    GL+  +    ++ ++L  +  + +Q   R+   R      
Sbjct: 911 ATTSIGQEGLDFHWYCRKVMHWNLPNNPIDFEQREGRVNRYRGMVVRQ 958


>gi|71735168|ref|YP_273040.1| DNA topoisomerase III [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555721|gb|AAZ34932.1| DNA topoisomerase III [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 483

 Score = 39.0 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 361 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 414

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 415 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 472


>gi|207347495|gb|EDZ73647.1| YBR245Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 595

 Score = 39.0 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/157 (8%), Positives = 38/157 (24%), Gaps = 25/157 (15%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNS---ASKTVKCLQLANGAVYYD----------EEKHW 48
           K Y K   +    + G N    +     +  ++  +  N    +D          +E   
Sbjct: 439 KWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 498

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYH----------FNSDLARLQKAFPQGRTLDKDP 98
                 ++    +   K   + +++             +                 +   
Sbjct: 499 YNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRI 558

Query: 99  CTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILV 133
             I ++N           +       +NL     +++
Sbjct: 559 QAIDDYNAPDSKKFCFLINDTCSRVSINLTSADVVVL 595


>gi|16082461|ref|NP_394951.1| RNA helicase (RIG-I) related protein [Thermoplasma acidophilum DSM
           1728]
 gi|10640841|emb|CAC12619.1| RNA helicase (RIG-I) related protein [Thermoplasma acidophilum]
          Length = 508

 Score = 39.0 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 20/186 (10%)

Query: 26  ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF-------- 77
           A+   K +  A+G      EK    +          I+         +   +        
Sbjct: 314 ATLRTKLMLAADGYTNPKMEKTLSIMESNVHGNARAIVFTHYRITSDLLMDYIQKNGTSL 373

Query: 78  --NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
                + +  +   +G + D+    I+++      +L A   +           + ++F+
Sbjct: 374 KPVRFIGQADRGSDEGLSQDQQKKIIEDFKNNVYNVLIATSIAEEGLDI--PDTDFVIFY 431

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
                     + I+R G T + + G      VY L+ +N+ D         K +     +
Sbjct: 432 EAVPS---EIRYIQRKGRTGRSRNGQ-----VYILVFENSRDMAYYYSSIRKVSRMTQTI 483

Query: 196 NALKKE 201
             L++E
Sbjct: 484 EDLRQE 489


>gi|110668437|ref|YP_658248.1| DNA repair helicase [Haloquadratum walsbyi DSM 16790]
 gi|109626184|emb|CAJ52640.1| DNA repair helicase [Haloquadratum walsbyi DSM 16790]
          Length = 692

 Score = 39.0 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 15/139 (10%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFPQGRTLDKDPCTIQEWNEGK 108
           +KI   + ++   + A  +V   +                       +     + + + +
Sbjct: 544 QKITTTKKLLGMHSDASALVFVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFRDDE 603

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ-AGFKRAVFV 167
           I +L         G++L      +V   L            R G  R  +      +  V
Sbjct: 604 ISVLVIS-RVGDEGIDLPNAELAVVASGLGGS--------RRQGAQRAGRTMRPTGSAQV 654

Query: 168 YYLIAQNTIDELVLQRLRT 186
           Y L  + T +E   QR   
Sbjct: 655 YVLATRGTTEEEFAQRQLR 673


>gi|320335744|ref|YP_004172455.1| type III restriction protein res subunit [Deinococcus maricopensis
           DSM 21211]
 gi|319757033|gb|ADV68790.1| type III restriction protein res subunit [Deinococcus maricopensis
           DSM 21211]
          Length = 471

 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
           D K++ LE I+        ++        +      L  A      + +    +Q++  G
Sbjct: 316 DGKLRVLEEILANHPKDRTLIFTDDNATVYRISREFLIPAITHQTPVKERHALLQKFRSG 375

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +  ++                 ++ V  S        ++ I+R+G   + QA  KRAV +
Sbjct: 376 EYRVIVTSRVLNEGVD--VPEASVAVVLSGT---ATEREHIQRLGRILR-QAKDKRAV-L 428

Query: 168 YYLIAQNTIDELVLQ 182
           Y ++ + T +E V Q
Sbjct: 429 YEVVTEGTSEERVSQ 443


>gi|154305675|ref|XP_001553239.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150853171|gb|EDN28363.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 253

 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
              +++  G +  +    +  +N G     ++        +GLN+Q+  +          
Sbjct: 108 CPCESYNSGLSEVERQELLARFNSGKEDPFVMIMSTKLSAYGLNIQHNCS-----DEIMS 162

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
                   E   + R  + G  R    Y L+ QNT     +Q    K 
Sbjct: 163 GTSFSDPQEGQELARIYRIGQTRISRAYKLVVQNTF----MQVRMNKR 206


>gi|157963516|ref|YP_001503550.1| ATP-dependent helicase HepA [Shewanella pealeana ATCC 700345]
 gi|189029433|sp|A8H8X8|RAPA_SHEPA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|157848516|gb|ABV89015.1| SNF2-related protein [Shewanella pealeana ATCC 700345]
          Length = 968

 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            + + + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKNNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQESGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  N++  F L  + +  +Q I R+      + G K  V ++ 
Sbjct: 558 AQALICSEIGSEGRNFQFASNLV-LFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHL 611

Query: 170 LIAQNTIDELVLQ 182
               NT  E ++Q
Sbjct: 612 PFLANTAQERLMQ 624


>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
 gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
          Length = 821

 Score = 39.0 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
              +G T  +    + ++  G+  +L A          L      +V F      E    
Sbjct: 401 NKNKGLTQKQQAEILDKFRAGEYNVLVAT---SVAEEGLDIPATDMVLF-----YEPIPS 452

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            I  I    +     K  V V  L+ + T DE      + K       ++ L+
Sbjct: 453 EIRSIQRKGRTGRQQKGRVIV--LVTKGTRDEAYYWSSKNKEKRMLKSMHGLE 503


>gi|213972020|ref|ZP_03400116.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
 gi|213923236|gb|EEB56835.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
          Length = 752

 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|253567590|ref|ZP_04845001.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841663|gb|EES69743.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                +A     + +K L  A    +  +      + + K + +E +I K      +   
Sbjct: 771 GDAKKDAGLRLMRQIKLLIKACSVPHLIDGYFGDGIPN-KTRYIEKLIRKIPGKVAVGCT 829

Query: 76  HF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                             R         T  K    + E++     +L     S    +N
Sbjct: 830 SIAAFDLYENHLRECFPNRPVFVVKGDVTFKKRQSIVTEFDSTVNGILVCTQQSLSSSVN 889

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +    ++++    W   +  Q         R  +   K    V+Y+  ++++++ ++  +
Sbjct: 890 IPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKELKDVHYVTYKDSVEQNLMALV 943

Query: 185 RTKSTIQDLLLNALKKE 201
            TK  + + + +   KE
Sbjct: 944 LTKERLNEFIKSGEVKE 960


>gi|189466897|ref|ZP_03015682.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
 gi|189435161|gb|EDV04146.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
          Length = 1000

 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 64/203 (31%), Gaps = 23/203 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK----CLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +F R              ++  + ++     ++  +         ++ + +  K + +E
Sbjct: 757 EEFCRICELYYNSTGDTKKDAGLRLMRQIKLLIKACSVPHLIS--GYYGDDYPSKTRYIE 814

Query: 61  VIIEKANAAPIIV-----------AYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +I K      I            +Y       R            K    + E++    
Sbjct: 815 SLIRKIPGKVAIGCTTLAAFDLYESYIRERFPDRPIYVVKGDVAFKKRQSIVTEFDSTIN 874

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L     S    +N+    ++++    W   +  Q         R  +   K    V+Y
Sbjct: 875 GILICTQQSLSSSVNIPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKEMKDVHY 928

Query: 170 LIAQNTIDELVLQRLRTKSTIQD 192
           +  ++++++ ++  + TK  + +
Sbjct: 929 VTYEDSVEQNLMALVLTKERLNE 951


>gi|17566484|ref|NP_507903.1| hypothetical protein Y113G7B.14 [Caenorhabditis elegans]
 gi|5824699|emb|CAB54333.1| C. elegans protein Y113G7B.14, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 540

 Score = 39.0 bits (89), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 36/114 (31%), Gaps = 8/114 (7%)

Query: 76  HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
            F              +T++     + +  +  + ++F    +        +G   ++  
Sbjct: 416 QFPEIFDIKHPNARITKTINIIQEVLMKKEKVTVSVVFLSERAGAIN---LHGATHVILL 472

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
            + W+L   Q+       +       K  V ++ +    T ++ V +    KS 
Sbjct: 473 GMHWNLALEQE-----ACSCVCNIAQKNIVTIHRIKVAGTNEDDVEKAQDDKSD 521


>gi|15921551|ref|NP_377220.1| hypothetical protein ST1287 [Sulfolobus tokodaii str. 7]
 gi|15622337|dbj|BAB66329.1| 543aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 543

 Score = 39.0 bits (89), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 14/152 (9%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQG-----RTLD 95
            Y+E K    + + K+KAL+ II+K N   I++   +      + K +           +
Sbjct: 384 IYNEMKKIVNLAENKLKALDDIIQKENGNKILIFTQYVDQAEEIAKKYNAYLITGKTNKN 443

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    ++ +   K  +L            L      +             +      + R
Sbjct: 444 EREKILRIFKTLKSGILVLTTV---GDEGLDIPDANVGIIVT----GTGSRRQFIQRLGR 496

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             +    +   +Y ++ + T +E   Q  + K
Sbjct: 497 LLRPSNGKVARLYEIVTRGTAEE--YQASKRK 526


>gi|284165293|ref|YP_003403572.1| type III restriction protein res subunit [Haloterrigena turkmenica
           DSM 5511]
 gi|284014948|gb|ADB60899.1| type III restriction protein res subunit [Haloterrigena turkmenica
           DSM 5511]
          Length = 488

 Score = 39.0 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 58/189 (30%), Gaps = 31/189 (16%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +  +       G + EA  +     +  ++                   K++AL+ I+
Sbjct: 325 YQELVKRS-----GSDPEAREALLARQRAREI-------------MFGSAAKLEALDEIL 366

Query: 64  EKANAAPIIVAYHF------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
           +       IV           S+   +     Q    ++     +        +  ++  
Sbjct: 367 DDHRGERTIVFTAHNDLAYDVSERFLIPTITHQTGAAERREILERFREGTYTRIATSNVL 426

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
             G  +      ++ V  S      E  Q + RI   +           +Y ++A++T +
Sbjct: 427 DEGVDV---PDASVAVVLSGSGSEREFTQRLGRILRPKTDGGRA----LLYEVVAEDTGE 479

Query: 178 ELVLQRLRT 186
           E + +R R 
Sbjct: 480 ERIARRRRD 488


>gi|315230780|ref|YP_004071216.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
 gi|315183808|gb|ADT83993.1| ATP-dependent RNA helicase [Thermococcus barophilus MP]
          Length = 770

 Score = 39.0 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 29/209 (13%)

Query: 9   RELYCDLQGENIEAFNS-ASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           R     L  E     N       +  +  +  +   +        D+  + ++  +EK  
Sbjct: 298 RAYLKRLYEERQTKSNKELMSDPRMKKAVSLLIQARDLGLDHPKMDKLKELIKEQLEKKP 357

Query: 68  AAPIIVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            + IIV  ++                     + +  +   +G +  K    +  +++G  
Sbjct: 358 NSKIIVFTNYRDTAKKIVKELVDMGIKVSRFVGQASRENDRGMSQKKQKEILDLFSQGIF 417

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L A  +    GL++    +++VF+                 + R+ + G  +   V  
Sbjct: 418 NVLVAT-SVGEEGLDVPEV-DLVVFYEPVPSAIRS--------IQRRGRTGRHKPGRVVI 467

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           L+A+ T DE      R K      +L  +
Sbjct: 468 LMAKGTRDEAYYWSSRHKEKQMIAVLKKV 496


>gi|253566979|ref|ZP_04844431.1| helicase domain-containing protein [Bacteroides sp. 3_2_5]
 gi|251944542|gb|EES85031.1| helicase domain-containing protein [Bacteroides sp. 3_2_5]
          Length = 974

 Score = 39.0 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            ++    I   +  K  +L A       G+NLQ   N ++ + L W+    +Q   R+  
Sbjct: 540 DEQRRDLIDSIHPDKPRILVAT-DCLSEGINLQELFNAVLHYDLPWNPNRIEQRDGRVDR 598

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             Q     K       L   N +D++V   L  K 
Sbjct: 599 FGQESPRIK---TFILLGENNDVDKIVWDVLIKKI 630


>gi|18976936|ref|NP_578293.1| ATP-dependent RNA helicase hepa, putative [Pyrococcus furiosus DSM
           3638]
 gi|18892556|gb|AAL80688.1| ATP-dependent RNA helicase hepa, putative [Pyrococcus furiosus DSM
           3638]
          Length = 940

 Score = 38.6 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 33/190 (17%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII--EKANAAPIIVAYHFNSDLA--- 82
           +  +  ++        E        D K++ +  I+     N   +I+   F   L    
Sbjct: 356 QLERLRRV-------LELGKKIGSKDSKLEVISDIVAYHIRNGEKVIIFTEFRDTLEYVL 408

Query: 83  --------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQY 127
                           +    +     K     +E N+      L         GLNL  
Sbjct: 409 ERLPDILRRKHGIVLEKDDIAKLHGGMKSEEIEREINKFHERANLLVSTDVASEGLNLH- 467

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
             ++++ +   W   + +Q + RI    Q +            +A  T D  VL  L  K
Sbjct: 468 VASVVINYEAPWSPIKLEQRVGRIWRLNQTRETKA----YTIFLATET-DLDVLNNLYRK 522

Query: 188 STIQDLLLNA 197
                  + +
Sbjct: 523 IMNIKEAVGS 532


>gi|242091650|ref|XP_002436315.1| hypothetical protein SORBIDRAFT_10g000300 [Sorghum bicolor]
 gi|241914538|gb|EER87682.1| hypothetical protein SORBIDRAFT_10g000300 [Sorghum bicolor]
          Length = 414

 Score = 38.6 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 54/200 (27%), Gaps = 41/200 (20%)

Query: 32  CLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR-------- 83
             Q  +     D+        D  I  +  I  ++    +++         +        
Sbjct: 1   MQQCCDHPYLVDQSLQSTLTKDHPITDILDIGVRSCGKLLLLDRMLQQIRIQGLRVLILS 60

Query: 84  -------------------------LQKAFPQGRTLDKDPCTIQEWNEGKI--PLLFAHP 116
                                      +   +G  L K    +  +N+      +     
Sbjct: 61  QSGGGSGNPMGDILDDFVRQRFGYESYERVERGLLLQKKQTAMNMFNDKTKGRFIFLIDS 120

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +CG  + L    + ++ +   W+      M +   + +         V ++ L +  T+
Sbjct: 121 RACGSSIKL-SSVDAIIIYGSDWNP-----MNDLRALQKVSMESQSEPVPIFRLYSSCTV 174

Query: 177 DELVLQRLRTKSTIQDLLLN 196
           +E  L   +    +   +LN
Sbjct: 175 EEKALILAKHDHILDSNILN 194


>gi|114330135|ref|YP_746357.1| helicase domain-containing protein [Nitrosomonas eutropha C91]
 gi|114307149|gb|ABI58392.1| helicase domain protein [Nitrosomonas eutropha C91]
          Length = 758

 Score = 38.6 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I E  +  I +L  +P     GL+L     I+   S +                R
Sbjct: 636 RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYTLQ------QAARR 689

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             + G K AV V YL    T     L  +  K  +       + +  + V
Sbjct: 690 SWRIGQKLAVRVIYLGYAATSQMTCLTLMAKKILVSQSTSGDVPESGLDV 739


>gi|213971934|ref|ZP_03400033.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
 gi|213923305|gb|EEB56901.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato T1]
          Length = 752

 Score = 38.6 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|14591755|ref|NP_143722.1| Hef nuclease [Pyrococcus horikoshii OT3]
          Length = 748

 Score = 38.6 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 68/213 (31%), Gaps = 31/213 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y    + LY + +  +  A        +  +     +   E        +     + 
Sbjct: 300 LRVY---LKRLYEEAKAGSTRASKELFLDKRMKKALALLIQAKELGIDHPKMEVLKGLIR 356

Query: 61  VIIEKANAAPIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQ 102
             +++   + IIV  ++                     + +  +   +G +  +    + 
Sbjct: 357 EQLKRKENSKIIVFTNYRETAKKVVEELMKDGIKARRFVGQASRENDRGMSQKEQKLILD 416

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +   +  +L A  +    GL++    ++++F+          Q        R+ + G +
Sbjct: 417 AFARSEFNVLVAT-SVGEEGLDVPEV-DLVIFYEPVPSAIRSVQ--------RRGRTGRQ 466

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           +   V  L+AQ T DE      R K  I    +
Sbjct: 467 KPGRVVILMAQGTRDEAYYWSSRQKEKIMRETI 499


>gi|149200190|ref|ZP_01877213.1| ATP-dependent helicase HepA [Lentisphaera araneosa HTCC2155]
 gi|149136727|gb|EDM25157.1| ATP-dependent helicase HepA [Lentisphaera araneosa HTCC2155]
          Length = 943

 Score = 38.6 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
            EK+    ++I  +      +       +      F +G +L++       +++     L
Sbjct: 470 KEKVDEKFLLICSSREKVEAIEQGIRQHMELKMAVFHEGLSLNQRDRNAVFFSQDTGARL 529

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                    G N Q+    L+ F L  +    +Q I R+      + G    + ++Y   
Sbjct: 530 LICSEIGSEGRNFQF-CQNLILFDLPMNPGLLEQRIGRLD-----RIGQTADIQIFYPYR 583

Query: 173 QNTID 177
           +++++
Sbjct: 584 KSSVE 588


>gi|255263853|ref|ZP_05343195.1| helicase domain protein, putative [Thalassiobium sp. R2A62]
 gi|255106188|gb|EET48862.1| helicase domain protein, putative [Thalassiobium sp. R2A62]
          Length = 927

 Score = 38.6 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ---RQAGFKRAVF--- 166
                    GLNL      +VFF+L W      Q+I R+   R    +     R+V    
Sbjct: 424 LIMEEFVEAGLNLHNFAADMVFFNLPWQAARIDQLIGRLDRLRSGGLKSYLDDRSVGTIG 483

Query: 167 VYYLIAQNTIDELVLQRL 184
           ++ ++   + DE VL+ L
Sbjct: 484 IWRMVVVGSADERVLEAL 501


>gi|212692341|ref|ZP_03300469.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
 gi|212665218|gb|EEB25790.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 63/203 (31%), Gaps = 23/203 (11%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK----CLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            +F R              ++  + ++     ++  +         ++ + +  K + +E
Sbjct: 757 EEFCRICELYYNSTGDTKKDAGLRLMRQIKLLIKACSVPHLIS--GYYGDDYPSKTRYIE 814

Query: 61  VIIEKANAAPIIVA-----------YHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +I K      I             Y       R            K    + E++    
Sbjct: 815 SLIRKIPGKVAIGCTTLAAFDLYEKYISERFPDRPIYVVKGDVAFKKRQSIVTEFDSTIN 874

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L     S    +N+    ++++    W   +  Q         R  +   K    V+Y
Sbjct: 875 GILICTQQSLSSSVNIPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKEMKDVHY 928

Query: 170 LIAQNTIDELVLQRLRTKSTIQD 192
           +  ++++++ ++  + TK  + +
Sbjct: 929 VTYEDSVEQNLMALVLTKERLNE 951


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEK   L  +
Sbjct: 283 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDDEKQTLLLGL 324

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 325 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 384

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 385 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 442

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 443 PD-IEAYIEQKI 453


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDDEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|321475032|gb|EFX85996.1| DNA helicase RecQ4 [Daphnia pulex]
          Length = 1253

 Score = 38.6 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              ++   +A+  G T  +     +++  GK+ ++ A  A              ++ ++ 
Sbjct: 820 RRGISWSAEAYHAGLTAARRSSVQKQFMTGKMKIVVATVAFGMGINK--SDIRAIIHYNA 877

Query: 138 WWDLEEHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
             + E + Q I R G             +  +    +   I  N+ D  VL++L  K 
Sbjct: 878 PKNFENYVQEIGRAGRDGLPAHCHVFLNSEGRDLQELKRFIYANSTDRHVLRKLMRKI 935


>gi|296118323|ref|ZP_06836904.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968881|gb|EFG82125.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 543

 Score = 38.6 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 10/130 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDL-----ARLQKAFPQGRTLDKDPCTIQEWNEG 107
           D K +A+  II+K     +++   +   L                +  +       +  G
Sbjct: 393 DAKFEAVREIIDKHAQQQMLIIGGYVEQLEDIAARLDAPLIHGRTSNAEREKLFDAFRNG 452

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +I +L          ++L      +     +   +E  Q + R+   +            
Sbjct: 453 EIQVLVVS-KVANFSIDLPEAAVAIQLSGTFGSRQEEAQRLGRLLRPKADGGEATF---- 507

Query: 168 YYLIAQNTID 177
           Y L+ +++ID
Sbjct: 508 YTLVTRDSID 517


>gi|328724641|ref|XP_003248208.1| PREDICTED: e3 ubiquitin-protein ligase SHPRH-like [Acyrthosiphon
           pisum]
          Length = 88

 Score = 38.6 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
              +    GLNL      + F     +  +     E   +    + G  +  FV+  I +
Sbjct: 1   MKLSVGSKGLNLTE-ATRIFFMEPIINKAD-----EHQAIGTIYRLGQTKPTFVHNFIIR 54

Query: 174 NTIDELV 180
           ++I+E +
Sbjct: 55  DSIEENI 61


>gi|302306298|ref|NP_982512.2| AAL030Cp [Ashbya gossypii ATCC 10895]
 gi|299788451|gb|AAS50336.2| AAL030Cp [Ashbya gossypii ATCC 10895]
          Length = 1539

 Score = 38.6 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 98   PCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ +  + +I  L         GL L      +       +        E   + R 
Sbjct: 1395 AKVVETFKADPEITCLLLDTKRQASGLTL-INATHVFLLEPIVNNST-----EFQAINRI 1448

Query: 157  RQAGFKRAVFVYYLIAQNTIDELVLQ 182
             + G     +V++ +  NT++  +L+
Sbjct: 1449 HRIGQTSETYVWHFMLLNTVEHSILR 1474


>gi|311258239|ref|XP_003127500.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory
           subunit 1-like [Sus scrofa]
          Length = 880

 Score = 38.6 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 25/202 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +++ + DL  ++I         ++ L          +  +W        + +E I    +
Sbjct: 145 KKDDFVDLLLQHIGTSAIMDLLLRLLTCVERPQLRQDVVNWLNEEKIVQRLIEQIHPSKD 204

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
            +    A     D+ RL                IQ  +  +   L A          L  
Sbjct: 205 DSQHSNASQSLCDIIRL-----------SREQVIQVQDSPEPDQLLATLEKQETIEQLLS 253

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
                       +       I+ +    + +     +V V   ++  ++D   L+ L   
Sbjct: 254 -----NMLEGEQNPSVIVSGIQVLLTLLEPRRPRSESVSVNNFLS--SVDGQ-LELLAQ- 304

Query: 188 STIQDLL-----LNALKKETIH 204
           +T+   +     L+AL+    H
Sbjct: 305 ATLDSAVCSVGALHALRPRLSH 326


>gi|268596846|ref|ZP_06131013.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550634|gb|EEZ45653.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 785

 Score = 38.6 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 590 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 649

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 650 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 708

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 709 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 763

Query: 205 V 205
           +
Sbjct: 764 I 764


>gi|301381880|ref|ZP_07230298.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tomato Max13]
          Length = 159

 Score = 38.6 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 37  RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 90

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 91  SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 148


>gi|301061062|ref|ZP_07201859.1| conserved domain protein [delta proteobacterium NaphS2]
 gi|300444856|gb|EFK08824.1| conserved domain protein [delta proteobacterium NaphS2]
          Length = 207

 Score = 38.6 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           R    R  +   K+ V VY+L    T+   +++ +  K 
Sbjct: 22  RQASRRSWRIPQKKPVKVYFLAYSGTMQTRLMRLMADKL 60


>gi|218189907|gb|EEC72334.1| hypothetical protein OsI_05543 [Oryza sativa Indica Group]
          Length = 2670

 Score = 38.6 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 56/207 (27%), Gaps = 46/207 (22%)

Query: 18  ENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH--------------DEKIKALE 60
             +E  +  +     +   +  +     +E       +                K+  L+
Sbjct: 790 SEMETDSVGALHDIYLSLKKCCDHPYIVNEFLRSSLSNNSNVTENIDTVVHASGKLLVLD 849

Query: 61  VIIEKANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD----------PCTI 101
            ++ +     + V   F SD         +         G    +              I
Sbjct: 850 KMLNEIKKKSLRVILLFQSDRAGGNKMGNILEDLMHHRFGPESYERVEYRAVLSRKQAAI 909

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N       +      +C   + L    + ++ +    +     + +++I +      
Sbjct: 910 DKFNNKTNGRFVFLIENRACLPSIKLSSI-DAIIIYGSDNNPLNDLKALQKIKIE----- 963

Query: 160 GFKRAVFVYYLIAQNTIDEL--VLQRL 184
                V ++ L    T++E   VL R 
Sbjct: 964 SQFERVSIFRLYTPFTVEEKSLVLARQ 990


>gi|257486911|ref|ZP_05640952.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 665

 Score = 38.6 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 543 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 596

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 597 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 654


>gi|325577154|ref|ZP_08147638.1| RNA polymerase-associated protein RapA [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160736|gb|EGC72857.1| RNA polymerase-associated protein RapA [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 920

 Score = 38.6 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 8/145 (5%)

Query: 33  LQLANGAVYYDEEKHW--KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
            Q+   A   DE+ HW    +   + + + VI + A  A  +       +  R      +
Sbjct: 433 HQVTIDAAEVDEKIHWLIDFLKSHRNEKILVICKTAQTAIQLEQILREKEAIRSAVFHER 492

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
              +++D       +      +    +    G N Q+  +++  F L  + +  +Q I R
Sbjct: 493 MSIIERDRAAAYFADTDNGAQVLLSSSIGSEGRNFQFACHLV-LFDLPENPDLLEQCIGR 551

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNT 175
           +      + G  R V +Y      +
Sbjct: 552 LD-----RIGQMRDVQIYVPCLSGS 571


>gi|313217669|emb|CBY38714.1| unnamed protein product [Oikopleura dioica]
          Length = 882

 Score = 38.6 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 34/166 (20%), Gaps = 32/166 (19%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------- 52
           K Y       +  L          +  +  ++  +  N        +             
Sbjct: 681 KYYRAILERNFDFLSKGASTGNVPSLMNTMMELRKCCNHPFLIKGAEDKIIDEYRAKGEV 740

Query: 53  ----------DEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK---- 96
                       K+  +  ++ K       +++       L  L+    Q     +    
Sbjct: 741 ADPLTSIVQASGKMVLIHKLLPKLKAGGHKVLIFSQMIRVLDILEDYLYQMSMGFERLDG 800

Query: 97  ------DPCTIQEWNEGKI-PLLFAHPASCGHGLNLQYGGNILVFF 135
                     I  + + +   +  +   +     N  +        
Sbjct: 801 RIRGNDRQAAIDRFCKTRFGQIRVSSLHTRWRTRNKPHCCRHCYHL 846


>gi|282897538|ref|ZP_06305539.1| hypothetical protein CRD_00704 [Raphidiopsis brookii D9]
 gi|281197633|gb|EFA72528.1| hypothetical protein CRD_00704 [Raphidiopsis brookii D9]
          Length = 594

 Score = 38.6 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
           + ++    + E       +L A       G+NLQ   +  + + L W+    +Q   RI 
Sbjct: 170 SEEEREIRLTELKNYSRRVLVAT-DCLSEGINLQTHFSAAIHYDLPWNPNRLEQREGRID 228

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
              Q     K  +        N +D  VL  L  K
Sbjct: 229 RYGQTAPIVKSCLLYGR---DNPVDGAVLDVLIRK 260


>gi|298707958|emb|CBJ30329.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 397

 Score = 38.6 bits (88), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++     +   + +  +L        HGL+L +  + +      WD     Q++ R    
Sbjct: 78  NRAKELERFRTDPECFVLLL-GKRGAHGLDLSFVTH-MFLMDQIWDRSLETQVVAR---- 131

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDE 178
              + G K +V V  LI ++T+++
Sbjct: 132 -ANRMGAKGSVSVVQLIMKDTMEQ 154


>gi|260944400|ref|XP_002616498.1| hypothetical protein CLUG_03739 [Clavispora lusitaniae ATCC 42720]
 gi|238850147|gb|EEQ39611.1| hypothetical protein CLUG_03739 [Clavispora lusitaniae ATCC 42720]
          Length = 448

 Score = 38.2 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 38/149 (25%), Gaps = 24/149 (16%)

Query: 2   KQYHKFQR---ELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKE 50
           K Y K      +      G+        +  ++  +  N    +                
Sbjct: 300 KWYQKILEKDLDAVNGANGKKESKTRLLNIVMQLRKCCNHPYLFEGAEPGPPYTTDEHLV 359

Query: 51  VHDEKIKALEVII--EKANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDP 98
            + +K+  L+ ++   +   + +++    +  L  L+                       
Sbjct: 360 YNSQKMIILDKLLKKFQKEGSRVLIFSQMSRVLDILEDYCMFRSYEYCRIDGQTDHADRI 419

Query: 99  CTIQEWNEGKI-PLLFAHPASCGHGLNLQ 126
             I E+N+ +I  +             L 
Sbjct: 420 QAIDEYNKPRIFKICVLVNNESWRVWVLT 448


>gi|193084204|gb|ACF09868.1| ATP-dependent RNA helicase EIF-4A family [uncultured marine group
           II euryarchaeote KM3-136-D10]
          Length = 928

 Score = 38.2 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T       +Q + EGK  +L A  +    GL+     +++VF+          + I+R
Sbjct: 409 GMTQKAQLEGLQRFREGKCNVLVAT-SVGEEGLD-VPRADLVVFYEPVGS---EIRTIQR 463

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
            G T + +AG      V+ LIA++T DE        +       ++ +++  
Sbjct: 464 RGRTGRHRAG-----TVHILIARDTRDEGARASALFREKKMKQAIDRVRRNM 510


>gi|241952779|ref|XP_002419111.1| ATP-dependent helicase Rad16, putative; DNA repair protein Rad16
            homologue, putative [Candida dubliniensis CD36]
 gi|223642451|emb|CAX42696.1| ATP-dependent helicase Rad16, putative [Candida dubliniensis CD36]
          Length = 1247

 Score = 38.2 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 17/123 (13%)

Query: 79   SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--------LLFAHPASCGHGLNLQYGGN 130
              L      +    T  K    + +++   +          L  + A   HGLN+    +
Sbjct: 1092 EILKIRHIIYANFITPVKRAQNLYDFSNYDVDKEENQGGICLIMNIAHSSHGLNIIAATH 1151

Query: 131  ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLRTKST 189
            I        +    Q+ IE   + R  + G K+ V V  L  +  +DE  +L +   K  
Sbjct: 1152 IYFI-----NP-VKQESIEAQAIKRAHRIGQKKEVTVKTLYLKG-VDELKILSK-NEKLK 1203

Query: 190  IQD 192
               
Sbjct: 1204 NSK 1206


>gi|224136300|ref|XP_002326827.1| hypothetical protein POPTRDRAFT_781297 [Populus trichocarpa]
 gi|222835142|gb|EEE73577.1| hypothetical protein POPTRDRAFT_781297 [Populus trichocarpa]
          Length = 485

 Score = 38.2 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 12/108 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASK---TVKCLQLANGAVYY-------DEEKHWKEV 51
           K Y    R+    L   +  A N  S     ++  +  +    +        EE      
Sbjct: 308 KVYTSILRKELPKLLALSSSASNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVK 367

Query: 52  HDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
              K+  L+ ++EK +     +++       L  LQ      +   + 
Sbjct: 368 ASGKLIILDQLLEKLHDSGHRVLLFAQMTHTLDILQDFLELRKYSYER 415


>gi|240080725|ref|ZP_04725268.1| Yea [Neisseria gonorrhoeae FA19]
 gi|240112907|ref|ZP_04727397.1| Yea [Neisseria gonorrhoeae MS11]
 gi|58891411|gb|AAW83099.1| Yea [Neisseria gonorrhoeae]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 632 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 691

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 692 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 750

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 751 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 805

Query: 205 V 205
           +
Sbjct: 806 I 806


>gi|154174339|ref|YP_001408188.1| putative DNA methylase [Campylobacter curvus 525.92]
 gi|112802351|gb|EAT99695.1| putative DNA methylase [Campylobacter curvus 525.92]
          Length = 766

 Score = 38.2 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR--QAGFK 162
           N G++ ++F      G G+N+Q   + L    + W     +Q   R+     +       
Sbjct: 227 NSGEVRIVFGSTQKIGTGVNIQERVSALHNIDVPWTPAALEQRQGRVERQGNKLLDEKQN 286

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             V VY    +  +D +  +++  K T    +
Sbjct: 287 FKVKVYDYATKKMLDAMNWEKIEQKRTFIAQI 318


>gi|237717755|ref|ZP_04548236.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229452984|gb|EEO58775.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 1000

 Score = 38.2 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R            K    + E++     +L     S    +N+    ++++    W   +
Sbjct: 848 RPVFVVKGDVAFKKRQSVVTEFDSTVNGILVCTQQSLSSSVNIPTCNDVILESLQWNIPK 907

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             Q         R  +   K    V+Y+  ++++++ ++  + TK  + + +
Sbjct: 908 MEQFY------FRFIRLDSKEQKDVHYVTYKDSVEQNLMALVLTKERLNEFI 953


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score = 38.2 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 16/171 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQ 85
           AN  +    +   ++   EK+  L   I        I+                      
Sbjct: 329 ANHNILQIVDVCTEDEKSEKLMRLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPA 388

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++  +    + E+  GK P+L A   +             ++ F      E++ 
Sbjct: 389 MCIHGDKSQPERDWVLNEFRTGKSPILVATDVASRGLD--VSDIKFVINFDFPNQCEDYI 446

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             I R     Q    +           ++ I+  +L+    K  I   L+ 
Sbjct: 447 HRIGRTARANQTGTAYTFFTQANAKQCKDLIE--ILK--EAKQQINPRLME 493


>gi|268682142|ref|ZP_06149004.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID332]
 gi|268622426|gb|EEZ54826.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID332]
          Length = 772

 Score = 38.2 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 577 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 636

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 637 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 695

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 696 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 750

Query: 205 V 205
           +
Sbjct: 751 I 751


>gi|260440525|ref|ZP_05794341.1| Yea [Neisseria gonorrhoeae DGI2]
 gi|291043828|ref|ZP_06569544.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291012291|gb|EFE04280.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 632 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 691

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 692 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 750

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 751 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 805

Query: 205 V 205
           +
Sbjct: 806 I 806


>gi|268598988|ref|ZP_06133155.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae MS11]
 gi|268583119|gb|EEZ47795.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae MS11]
          Length = 803

 Score = 38.2 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 608 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 667

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 668 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 726

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 727 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 781

Query: 205 V 205
           +
Sbjct: 782 I 782


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score = 38.2 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 12/120 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS----------DLARLQKAFPQGRT 93
            + ++     EK   L  ++ K N    +V  +                        G T
Sbjct: 214 NQYYYDVDDSEKFSMLVHLLRKENPKKALVFTNMRKTSDIVAKNLFMHGFKASVLHGGLT 273

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++ + +G+I +L A   +         G   +  + +    E++   I R   
Sbjct: 274 QSKRDRMMERFRKGEIRVLVATDVASRGLD--VKGVTHVFNYDVPSKAEDYIHRIGRTAR 331


>gi|290559606|gb|EFD92934.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 508

 Score = 38.2 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 66/213 (30%), Gaps = 31/213 (14%)

Query: 10  ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA--N 67
                ++    +         K LQ+        E+   K +   K++ L  +++     
Sbjct: 300 NFLVKIEKGKAKTDKELVSDPKFLQI----KEKTEDLLKKGIEHPKLEQLVQLLKNNFSE 355

Query: 68  AAPIIVAYHFNSDLA---------------RLQKAFPQGRTLDKDPCTIQEWNEGKIPLL 112
               I+   +   +                R       G +  +    I ++  G   +L
Sbjct: 356 DKKAIIFAQYRDTVDAIYSRISSMENIRPVRFIGQGKGGLSQKEQVNIISDFESGVYNVL 415

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
               +    G+++  G +I VF+        + Q   R+G     +        V+ LI 
Sbjct: 416 V-STSVSEEGMSI-RGVDIAVFYETIPSAIRNIQRRGRVGRFAAGK--------VFILIT 465

Query: 173 QNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           + T DE      + +      ++  +++   ++
Sbjct: 466 KGTNDESYYWLSKRREKSMKKIIKNIQENPENI 498


>gi|268686611|ref|ZP_06153473.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626895|gb|EEZ59295.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 763

 Score = 38.2 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 568 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 627

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 628 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 686

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 687 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 741

Query: 205 V 205
           +
Sbjct: 742 I 742


>gi|227486086|ref|ZP_03916402.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235933|gb|EEI85948.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 252

 Score = 38.2 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194
             + W   +  Q   RI      Q    + V ++  + +NT D  + Q L  K      +
Sbjct: 17  LDIPWRPADLSQRAGRIVR----QGNENKEVHIFRYVTENTFDAYLFQTLENKQKYISQI 72

Query: 195 LNA 197
           + +
Sbjct: 73  MTS 75


>gi|117926698|ref|YP_867315.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117610454|gb|ABK45909.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 572

 Score = 38.2 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    ++ + +G+ P+L A   +         G   ++ + L  + E++   I R  
Sbjct: 355 PQMKRLKVLKRFQDGEYPVLIATDVAGRGLHI--DGVTHVINYDLPDNAEDYVHRIGRTA 412

Query: 153 V 153
            
Sbjct: 413 R 413


>gi|240128214|ref|ZP_04740875.1| Yea [Neisseria gonorrhoeae SK-93-1035]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 632 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 691

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 692 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 750

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 751 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 805

Query: 205 V 205
           +
Sbjct: 806 I 806


>gi|55824588|gb|AAV66414.1| chromodomain helicase DNA-binding protein 4 [Macaca fascicularis]
          Length = 467

 Score = 38.2 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 17/31 (54%)

Query: 165 VFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           V +Y  + + +++E + Q  + K  +  L++
Sbjct: 1   VMIYRFVTRASVEERITQVAKKKMMLTHLVV 31


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score = 38.2 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ ++     IV  +   F   +AR                   K    +  
Sbjct: 244 EKIPLLLGLLSRSEGMRTIVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 303

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 304 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 361

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 362 ACERYAMSLPD-IEAYIEQKI 381


>gi|91791900|ref|YP_561551.1| ATP-dependent helicase HepA [Shewanella denitrificans OS217]
 gi|122968987|sp|Q12RU8|RAPA_SHEDO RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|91713902|gb|ABE53828.1| SNF2-related [Shewanella denitrificans OS217]
          Length = 968

 Score = 38.2 bits (87), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +             +++D        E   
Sbjct: 498 FLKSHRSKKVLIIASQAETALSLEEALRTREGILATVFHEGMSIIERDKAGAYFAQEDAG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  + LV F L  + +  +Q I R+      + G K  + ++ 
Sbjct: 558 AQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHL 611

Query: 170 LIAQNTIDELVLQ 182
              + T  E ++Q
Sbjct: 612 PYLEGTAQERLMQ 624


>gi|167521073|ref|XP_001744875.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776489|gb|EDQ90108.1| predicted protein [Monosiga brevicollis MX1]
          Length = 616

 Score = 38.2 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 102 QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161
           +      +P L     +   GL L    N ++              +E   + R  + G 
Sbjct: 545 EFKTAEDMPFLLLSTKANNAGLTLT-VANHIIMLDAILSPG-----VEAQLINRVHRIGQ 598

Query: 162 KRAVFVYYLI 171
            R V ++  +
Sbjct: 599 SRPVTIHKYV 608


>gi|82539300|ref|XP_724048.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478561|gb|EAA15613.1| SNF2 family N-terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 986

 Score = 38.2 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                 +           +    I+E+     + +      + G GLNL    N ++   
Sbjct: 900 KRFQNNVYVRLDGSTNTIERQQIIKEFSENDNVFIFLLSTKAGGVGLNL-IAANHVILMD 958

Query: 137 LWWDLEEHQQMIERIGVTR 155
             W+    +Q  +R+    
Sbjct: 959 QDWNPHNDRQAEDRVHRLG 977


>gi|268603668|ref|ZP_06137835.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID1]
 gi|268587799|gb|EEZ52475.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID1]
          Length = 772

 Score = 38.2 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 577 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 636

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 637 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 695

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 696 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 750

Query: 205 V 205
           +
Sbjct: 751 I 751


>gi|222622030|gb|EEE56162.1| hypothetical protein OsJ_05065 [Oryza sativa Japonica Group]
          Length = 2645

 Score = 38.2 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 56/207 (27%), Gaps = 46/207 (22%)

Query: 18  ENIEAFNSASK---TVKCLQLANGAVYYDEEKHWKEVH--------------DEKIKALE 60
             +E  +  +     +   +  +     +E       +                K+  L+
Sbjct: 773 SEMETDSVGALHDIYLSLKKCCDHPYIVNEFLRSSLSNNSNVTENIDTVVHASGKLLVLD 832

Query: 61  VIIEKANAAPIIVAYHFNSD---------LARLQKAFPQGRTLDKD----------PCTI 101
            ++ +     + V   F SD         +         G    +              I
Sbjct: 833 KMLNEIKKKSLRVILLFQSDRAGGNKMGNILEDLMHHRFGPESYERVEYRAVLSRKQAAI 892

Query: 102 QEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++N       +      +C   + L    + ++ +    +     + +++I +      
Sbjct: 893 DKFNNKTNGRFVFLIENRACLPSIKLSSI-DAIIIYGSDNNPLNDLKALQKIKIE----- 946

Query: 160 GFKRAVFVYYLIAQNTIDEL--VLQRL 184
                V ++ L    T++E   VL R 
Sbjct: 947 SQFERVSIFRLYTPFTVEEKSLVLARQ 973


>gi|6707723|sp|O91729|NTP1_CFEPV RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|3721992|gb|AAC63435.1| nucleotide triphosphate phosphohydrolase I [Choristoneura
           fumiferana entomopoxvirus 'L']
          Length = 647

 Score = 38.2 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQA--GFKRAVFVYYLIA----QNTIDELVLQR 183
           N ++   + W+  E +Q+I R       +      R V V+++I+    + ++D+ +L  
Sbjct: 466 NDIIILDMPWNESELKQIIGRSIRLNSHEYLPINYRYVNVHFIISYSNNRKSVDKEILDI 525

Query: 184 LRTKSTIQDLLLNALKKETIHV 205
           ++ K    +++ + LK   I +
Sbjct: 526 IKNKQGKINVVFDLLKASPIEI 547


>gi|240123514|ref|ZP_04736470.1| Yea [Neisseria gonorrhoeae PID332]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 55/181 (30%), Gaps = 21/181 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLA-------------RL 84
           +++ E +  +E    K   +  +++ +       +V   +                    
Sbjct: 632 LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK 691

Query: 85  QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
                     D+    +++     + ++  +P     GL+L      + F    +++   
Sbjct: 692 AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTL 750

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
                     R  + G K  V VY+    +T  ++ L+ +  K  +       +    + 
Sbjct: 751 M-----QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLD 805

Query: 205 V 205
           +
Sbjct: 806 I 806


>gi|312377808|gb|EFR24548.1| hypothetical protein AND_10783 [Anopheles darlingi]
          Length = 1101

 Score = 38.2 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 4/44 (9%), Positives = 14/44 (31%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 52
           + ++   Q   ++ F      ++  Q+        +     E +
Sbjct: 895 KRMHNKGQEAEVQQFQILVLLLRLRQICCHPGLIHKMLSDDEGN 938


>gi|330966945|gb|EGH67205.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 378

 Score = 38.2 bits (87), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 256 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 309

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 310 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 367


>gi|262194053|ref|YP_003265262.1| helicase [Haliangium ochraceum DSM 14365]
 gi|262077400|gb|ACY13369.1| helicase domain protein [Haliangium ochraceum DSM 14365]
          Length = 1094

 Score = 38.2 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + E    L+     +   GL+L    + L+   L ++    +Q   RI     
Sbjct: 570 RTLAVRRFQEED-NLILVSTDATAEGLDLHLRCHHLLHLELPYNPNRLEQRNGRID---- 624

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
            + G + A  V YL    T +E +L RL  K   Q  
Sbjct: 625 -RFGQRFAPQVRYLYLAGTFEERLLLRLVAKYERQRA 660


>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
 gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
           FACM; AltName: Full=ATP-dependent RNA helicase FANCM
          Length = 2021

 Score = 38.2 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
             +    +      ++E I        P+I    F            +G T  +    ++
Sbjct: 459 CHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFV---GHASGKNTKGFTQKEQLQVVR 515

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G    L         GL++    ++++ F          Q + R G  RQ +    
Sbjct: 516 QFRDGGYNTLV-STCVGEEGLDI-GEVDLIICFDAQKSPIRLIQRMGRTGRKRQGR---- 569

Query: 163 RAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNALKKETIHV 205
               +  ++A+   +E    Q    K  I   +  +  ++ + +
Sbjct: 570 ----IVVILAEG-REERTYNQSQSNKKNIYKAI--SGNRQVLRL 606


>gi|77361539|ref|YP_341114.1| ATP-dependent helicase HepA [Pseudoalteromonas haloplanktis TAC125]
 gi|76876450|emb|CAI87672.1| RNA polymerase associated protein (ATP-dependent helicase HepA)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 964

 Score = 38.2 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       + +      +L         G N Q+  + LV F L  + +  +
Sbjct: 530 FHEGMSIIERDRAAAFFADEYDNAQILLCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G  + V ++    +NT  E++L+
Sbjct: 588 QRIGRLD-----RIGQTQDVNIHVPYFENTAQEVLLR 619


>gi|325924306|ref|ZP_08185850.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545171|gb|EGD16481.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 523

 Score = 38.2 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 155 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 196

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 197 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 256

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 257 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 314

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 315 PD-IEAYIAQKI 325


>gi|171316721|ref|ZP_02905934.1| helicase domain protein [Burkholderia ambifaria MEX-5]
 gi|171098172|gb|EDT42983.1| helicase domain protein [Burkholderia ambifaria MEX-5]
          Length = 725

 Score = 38.2 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 88  FPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           F  G  + K        +  G    L +   S   G NL    + ++F+   W       
Sbjct: 578 FHGGIPIAKRVKVKDQRFLTGLATGLLSTKESGRAGYNLPN-ADYVLFYDRSWTWRAEY- 635

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                 + R  +   K  + V Y     +ID    Q +  K       L+
Sbjct: 636 ----QAMRRALRWNRKGRLSVEYFHLPGSIDVYQDQMVAHKRDAMQAGLD 681


>gi|11499927|ref|NP_071172.1| ATP-dependent RNA helicase HepA, putative [Archaeoglobus fulgidus
           DSM 4304]
 gi|2650747|gb|AAB91314.1| ATP-dependent RNA helicase HepA, putative [Archaeoglobus fulgidus
           DSM 4304]
          Length = 943

 Score = 38.2 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           + +Q+ N      E+ +   +  + +  L+ +              F             
Sbjct: 386 RLVQVVNEH---MEKGNKVIIFTQFLATLDHLER-----------TFKEIYGENSVVTVH 431

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G    ++             +L A   + G  LNLQ   N+++ + + W+   + Q + R
Sbjct: 432 GGLTHEEKKNRIAKLWDSAKILIAT-DAAGESLNLQA-ANVVIHYEIPWNPVVYIQRVGR 489

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
           +      + G ++ +++  ++    I+  VL+ +  K    +   +    E I
Sbjct: 490 V-----YRYGQEKDIYIQSMLPVFKIERRVLEVILQKVETIEKDFDIGSVEII 537


>gi|301769905|ref|XP_002920371.1| PREDICTED: putative DNA repair and recombination protein
           RAD26-like, partial [Ailuropoda melanoleuca]
          Length = 802

 Score = 38.2 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 17/123 (13%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K     QL N      + K        K+  +      A                   + 
Sbjct: 696 KMKVLQQLLNHCRKNKD-KILLFSFSTKLLDVLQQYCMAAG--------------LDYRR 740

Query: 88  FPQGRTLDKDPCTIQEWNEGK-IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                  ++    ++E+N  + + +      + G GLN   G N++V F   W+     Q
Sbjct: 741 LDGSTKSEERIKIVKEFNSTQDVNICLVSTMAGGLGLNF-VGANVVVLFDPTWNPANDLQ 799

Query: 147 MIE 149
            I+
Sbjct: 800 AID 802


>gi|254674197|emb|CBA09981.1| hypothetical protein, (pXO1-08) [Neisseria meningitidis alpha275]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +++     + ++  +P     GL+L      + F    +++             
Sbjct: 702 DQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTLM-----QAAR 755

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R  + G K  V VY+    +T  ++ L+ +  K  +       +    + +
Sbjct: 756 RSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDI 806


>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
          Length = 2021

 Score = 38.2 bits (87), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
             +    +      ++E I        P+I    F            +G T  +    ++
Sbjct: 459 CHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFV---GHASGKNTKGFTQKEQLQVVR 515

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G    L         GL++    ++++ F          Q + R G  RQ +    
Sbjct: 516 QFRDGGYNTLV-STCVGEEGLDI-GEVDLIICFDAQKSPIRLIQRMGRTGRKRQGR---- 569

Query: 163 RAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNALKKETIHV 205
               +  ++A+   +E    Q    K  I   +  +  ++ + +
Sbjct: 570 ----IVVILAEG-REERTYNQSQSNKKNIYKAI--SGNRQVLRL 606


>gi|240117956|ref|ZP_04732018.1| Yea [Neisseria gonorrhoeae PID1]
          Length = 827

 Score = 38.2 bits (87), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +++     + ++  +P     GL+L      + F    +++             
Sbjct: 702 DQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTLM-----QAAR 755

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R  + G K  V VY+    +T  ++ L+ +  K  +       +    + +
Sbjct: 756 RSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDI 806


>gi|332036098|gb|EGI72574.1| RNA polymerase associated protein RapA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 964

 Score = 37.8 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       + +      +L         G N Q+  + LV F L  + +  +
Sbjct: 530 FHEGMSIIERDRAAAFFADEYDNAQILLCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G  + V ++    +NT  E++L+
Sbjct: 588 QRIGRLD-----RIGQTQDVNIHVPYFENTAQEVLLR 619


>gi|310831272|ref|YP_003969915.1| putative superfamily II helicase/VV D11-like transcription factor
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386456|gb|ADO67316.1| putative superfamily II helicase/VV D11-like transcription factor
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 777

 Score = 37.8 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 84  LQKAFPQGRTLDKDPCTIQEWNEG------KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
               +  G   +      + +N+       KI ++   PA    G+NL      +     
Sbjct: 515 RYMEYHGGIDAEIREKYKKIFNDPSNKYAEKIKIILISPA-GSEGINL-KNTRQVHLMEP 572

Query: 138 WWDLEEHQQMIERIGVTRQR----QAGFKRAVFVYYLIAQN---TIDELVLQRLRTKSTI 190
           +W+    +Q+I R               K  V+ Y +I +N   T D+ +    R K+ +
Sbjct: 573 YWNEVRIEQIIGRAIRQCSHADLPMNERKVDVYRYKMIRKNGKQTTDQEMESISRKKNNL 632

Query: 191 QDLLLNALKK 200
               L A+++
Sbjct: 633 IQSFLEAVRE 642


>gi|212633452|ref|YP_002309977.1| ATP-dependent helicase HepA [Shewanella piezotolerans WP3]
 gi|254789696|sp|B8CIB4|RAPA_SHEPW RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|212554936|gb|ACJ27390.1| SNF2-like:Helicase [Shewanella piezotolerans WP3]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKTNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQETGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  + LV F L  + +  +Q I R+      + G K  V ++ 
Sbjct: 558 AQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHL 611

Query: 170 LIAQNTIDELVLQ 182
                T  E ++Q
Sbjct: 612 PYLAGTAQERLMQ 624


>gi|59710877|ref|YP_203653.1| ATP-dependent helicase HepA [Vibrio fischeri ES114]
 gi|75354721|sp|Q5E881|RAPA_VIBF1 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|59478978|gb|AAW84765.1| RNA polymerase-associated helicase protein (ATPase and RNA
           polymerase recycling factor) [Vibrio fischeri ES114]
          Length = 952

 Score = 37.8 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  ++++     +++                         F +G ++ +    
Sbjct: 489 FDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKA 548

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   EG   +L         G N Q+  N LV F L ++ +  +Q I R+      +
Sbjct: 549 AAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----R 601

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    Q T
Sbjct: 602 IGQKRDIEIHVPYLQGT 618


>gi|254788394|ref|YP_003075823.1| ATP-dependent helicase HepA [Teredinibacter turnerae T7901]
 gi|237685662|gb|ACR12926.1| RNA polymerase-associated protein RapA [Teredinibacter turnerae
           T7901]
          Length = 879

 Score = 37.8 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 6/114 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           I  +         Y +            +   +++D       +      L         
Sbjct: 422 ICRQLAQVKDCENYLWQKHGIDAALFHEEQNLIERDKAAAYFADSEHGSQLLVCSEIGSE 481

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           G N Q+  +++    L    +  +Q I R+      + G  R V V+   A ++
Sbjct: 482 GRNFQFSCHLVC-LDLPEHPDLLEQRIGRLD-----RIGQTRDVHVHVPFAAHS 529


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score = 37.8 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 202 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 243

Query: 63  IEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +   F   +AR  +                K    +  + +G++ +L
Sbjct: 244 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 303

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 304 VATDVAARGLHI--DGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 361

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 362 PD-IEAYIEQKI 372


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score = 37.8 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 210 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 251

Query: 63  IEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +   F   +AR  +                K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score = 37.8 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    DEKI  L  +
Sbjct: 210 AYEHMNEPQKLVVEAETITAA-------RVRQ-----------RIYFPADDEKIPLLLGL 251

Query: 63  IEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +   F   +AR  +                K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score = 37.8 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ +      +V  +   F   +AR                   K    +  
Sbjct: 244 EKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 303

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 304 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 361

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 362 ACERYAMSLPD-IEAYIEQKI 381


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score = 37.8 bits (86), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ +      +V  +   F   +AR                   K    +  
Sbjct: 243 EKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 302

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 303 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 360

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 361 ACERYAMSLPD-IEAYIEQKI 380


>gi|330891815|gb|EGH24476.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 37.8 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 56  RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 109

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 110 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 167


>gi|330878697|gb|EGH12846.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 217

 Score = 37.8 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  I +L  +P     GL+L      + F    +++   Q         R
Sbjct: 95  RREDWILDQVDRGIDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 148

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 149 SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 206


>gi|321464203|gb|EFX75212.1| hypothetical protein DAPPUDRAFT_323398 [Daphnia pulex]
          Length = 238

 Score = 37.8 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               +I Q T++  +L+  + K  + + LL
Sbjct: 170 TFIQMITQGTVEVRILRLQQEKLAMANGLL 199


>gi|160877020|ref|YP_001556336.1| ATP-dependent helicase HepA [Shewanella baltica OS195]
 gi|217974883|ref|YP_002359634.1| ATP-dependent helicase HepA [Shewanella baltica OS223]
 gi|189029430|sp|A9L3Y2|RAPA_SHEB9 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|254789695|sp|B8ECC6|RAPA_SHEB2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|160862542|gb|ABX51076.1| SNF2-related protein [Shewanella baltica OS195]
 gi|217500018|gb|ACK48211.1| SNF2-related protein [Shewanella baltica OS223]
 gi|315269223|gb|ADT96076.1| SNF2-related protein [Shewanella baltica OS678]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I  +A  A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               ++T  E ++Q
Sbjct: 611 LPYLEDTAQERLMQ 624


>gi|15898471|ref|NP_343076.1| hypothetical protein SSO1653 [Sulfolobus solfataricus P2]
 gi|13814900|gb|AAK41866.1| Helicase of the snf2/rad54 family (amino end fragment),
           hypothetical [Sulfolobus solfataricus P2]
          Length = 802

 Score = 37.8 bits (86), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 5/88 (5%)

Query: 3   QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
            Y      L+ ++             S  +K  Q+ +                 K+    
Sbjct: 679 MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLK-GGEQSVRRSGKMIRTM 737

Query: 61  VIIEK--ANAAPIIVAYHFNSDLARLQK 86
            IIE+       I +   F      ++ 
Sbjct: 738 EIIEEALDEGDKIAIFTQFVDMGKIIRN 765


>gi|304410892|ref|ZP_07392509.1| SNF2-related protein [Shewanella baltica OS183]
 gi|307304937|ref|ZP_07584687.1| SNF2-related protein [Shewanella baltica BA175]
 gi|304350789|gb|EFM15190.1| SNF2-related protein [Shewanella baltica OS183]
 gi|306912339|gb|EFN42763.1| SNF2-related protein [Shewanella baltica BA175]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I  +A  A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               ++T  E ++Q
Sbjct: 611 LPYLEDTAQERLMQ 624


>gi|126172784|ref|YP_001048933.1| ATP-dependent helicase HepA [Shewanella baltica OS155]
 gi|189029428|sp|A3D001|RAPA_SHEB5 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|125995989|gb|ABN60064.1| SNF2-related protein [Shewanella baltica OS155]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I  +A  A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               ++T  E ++Q
Sbjct: 611 LPYLEDTAQERLMQ 624


>gi|240115662|ref|ZP_04729724.1| Yea [Neisseria gonorrhoeae PID18]
 gi|268601341|ref|ZP_06135508.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID18]
 gi|268585472|gb|EEZ50148.1| DEAD/DEAH box helicase [Neisseria gonorrhoeae PID18]
          Length = 548

 Score = 37.8 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           D+    +++     + ++  +P     GL+L      + F    +++             
Sbjct: 423 DQREDWVEDQLASGVQVVICNPELVKTGLDLLAF-PTIYFLQTGYNVYTLM-----QAAR 476

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
           R  + G K  V VY+    +T  ++ L+ +  K  +       +    + +
Sbjct: 477 RSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDI 527


>gi|71997889|ref|NP_498690.2| hypothetical protein ZK686.2 [Caenorhabditis elegans]
 gi|37999937|sp|P34668|YO12_CAEEL RecName: Full=Putative ATP-dependent RNA helicase ZK686.2
 gi|31746612|gb|AAP68928.1| Hypothetical protein ZK686.2 [Caenorhabditis elegans]
          Length = 593

 Score = 37.8 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 57/177 (32%), Gaps = 24/177 (13%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP-C 99
            +     ++++   K     + + + +++  +          + +  +   +   K    
Sbjct: 381 KFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYK 440

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
            ++++N+ +  +L         G +L     ++ +        + +  + R    R  +A
Sbjct: 441 MLEKFNKNENRVLICSDVLAR-GTDLNKVDCVINY----NLPADDKLFVHR--AGRTGRA 493

Query: 160 GFKRAVFVY------YLIAQ---------NTIDELVLQRLRTK-STIQDLLLNALKK 200
           G    V          L  +         +T++E + + +  K        L +LK 
Sbjct: 494 GQDGYVISVGDKESKRLFVKMLKVTNLWGDTVEEQMEEYIFEKDMDRYSKALESLKA 550


>gi|238918645|ref|YP_002932159.1| ATP-dependent helicase HepA [Edwardsiella ictaluri 93-146]
 gi|238868213|gb|ACR67924.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 950

 Score = 37.8 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F QG +L +       +   E    +L         G N Q+  N LV F L ++ +  +
Sbjct: 516 FHQGMSLIERDRAAAYFASQEEGAQVLLCS-EIGSEGRNFQF-ANHLVMFDLPFNPDLLE 573

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + +Y    + T
Sbjct: 574 QRIGRLD-----RIGQARDIQIYVPCLEGT 598


>gi|330989611|gb|EGH87714.1| SNF2-related:helicase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 604

 Score = 37.8 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 41/152 (26%), Gaps = 7/152 (4%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 66
             +    +         +  ++     QL    +   +     ++  E     +VI+   
Sbjct: 455 LSQAERDEYNQIMRSDTHRFARLGALRQL----LERVKVLIVADLMAELDVDDKVILFCE 510

Query: 67  NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNL 125
               ++    +   +           +  K    I     +    +     ++ G G NL
Sbjct: 511 YQESVVTLREYCLKMGIGCVTLVGSDSPKKRQKAIDAFQQDQDCRVFIGTRSAAGTGYNL 570

Query: 126 QYGGNILVFFSLWWDLEEHQQMI-ERIGVTRQ 156
               N + F  L W      ++   RI +   
Sbjct: 571 TA-ANYVFFPGLPWTPGLRTKLKTGRIAMGNC 601


>gi|326428746|gb|EGD74316.1| hypothetical protein PTSG_12430 [Salpingoeca sp. ATCC 50818]
          Length = 1116

 Score = 37.8 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 103  EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
               + +   L        H   L     +     + W          R  V+ +  A   
Sbjct: 998  FTQDPRFFCLLLST---AHLPRLPAFVPVCAVIEVDW----ISDHRHRSRVSDRFGAKRT 1050

Query: 163  RAVFVYYLIAQNTIDEL 179
              V +Y L  ++TI+E 
Sbjct: 1051 PPVTLYRLYTKDTIEER 1067


>gi|156358317|ref|XP_001624467.1| predicted protein [Nematostella vectensis]
 gi|156211250|gb|EDO32367.1| predicted protein [Nematostella vectensis]
          Length = 642

 Score = 37.8 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G +  +    +  +  G    L         GL++     I+  F          Q + R
Sbjct: 510 GLSQKEQLEVVHRFRMGGYNTLV-STCVGEEGLDIGDVDLIVC-FDAHASPIRLVQRMGR 567

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR-LRTKSTIQDLLL 195
            G  R  +        +  L+A+   +E V +R    K +I   ++
Sbjct: 568 TGRKRDGR--------IVVLVAEGK-EEQVYKRSQSNKKSIHKAIV 604


>gi|77166040|ref|YP_344565.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254436366|ref|ZP_05049872.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76884354|gb|ABA59035.1| DEAD/DEAH box helicase-like protein [Nitrosococcus oceani ATCC
           19707]
 gi|207088056|gb|EDZ65329.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 431

 Score = 37.8 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 3/88 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    +  + +   P+L A   +             +  + L  D E++   I R  
Sbjct: 289 PQGKRQRLLAAFQDRIYPILVATDVAARGLHI--STVTHVFNYDLPQDPEDYVHRIGRTA 346

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELV 180
                      A   Y     + I+E +
Sbjct: 347 RAGASGLAVSFACEDYAFSLPD-IEEYI 373


>gi|297278613|ref|XP_002801591.1| PREDICTED: DNA repair and recombination protein RAD54-like [Macaca
           mulatta]
          Length = 511

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
              TI+E + QR   K  +   +++ 
Sbjct: 387 IAGTIEEKIFQRQSHKKALSSCVVDE 412


>gi|197333950|ref|YP_002155029.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio fischeri MJ11]
 gi|254789700|sp|B5FGE9|RAPA_VIBFM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|197315440|gb|ACH64887.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio fischeri MJ11]
          Length = 969

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  ++++     +++                         F +G ++ +    
Sbjct: 489 FDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKA 548

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   EG   +L         G N Q+  N LV F L ++ +  +Q I R+      +
Sbjct: 549 AAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----R 601

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    Q T
Sbjct: 602 IGQKRDIEIHVPYLQGT 618


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLAR----------LQKAFPQGRT 93
           ++  +    D K+  L  II + N + ++V  +    ++R            +       
Sbjct: 278 DQVVYIVTSDRKLALLYNIIVQQNLSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVP 337

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             K    ++++  GKI +L A               + +V F L  D E++   I R G 
Sbjct: 338 QQKRSRRLEDFKSGKIRVLVATDVMARGIH--VEDMDHVVNFDLPHDPEDYVHRIGRTGR 395

Query: 154 TRQ 156
              
Sbjct: 396 AGA 398


>gi|13542321|ref|NP_112009.1| RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
 gi|14325756|dbj|BAB60659.1| translation initiation factor eIF4A [Thermoplasma volcanium GSS1]
          Length = 513

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 22/197 (11%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSAS-----KTVKCLQLANGAVYYDEEKHWKEVHDEKI 56
           + Y   +     D +       N        K +K L++    V   E            
Sbjct: 304 RAYSMMK--SLDDFRKAIENMKNVLPGYRNPKMMKVLEICQEKVIAGERAIVFTHFRATS 361

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHP 116
             L   ++ ++             + +  +    G + ++    I+++  G   +L A  
Sbjct: 362 DMLLAYLKNSSDKIKP-----VRFIGQADRGTDVGLSQEEQRQIIEQFRNGTYNVLIATS 416

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +           +++VF+          Q   R G +R           VY L+ +N+ 
Sbjct: 417 IAEEGLDI--PDTDVVVFYEAVPSEIRFIQRKGRTGRSRSG--------EVYILVYENSR 466

Query: 177 DELVLQRLRTKSTIQDL 193
           D     R   K ++ + 
Sbjct: 467 DMAYYYRSLKKVSMMNR 483


>gi|294632183|ref|ZP_06710743.1| SNF2/RAD54 family helicase [Streptomyces sp. e14]
 gi|292835516|gb|EFF93865.1| SNF2/RAD54 family helicase [Streptomyces sp. e14]
          Length = 284

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 2/42 (4%)

Query: 3   QYHKFQRELYCDLQGENIEAFN--SASKTVKCLQLANGAVYY 42
            Y    RE    ++     A             Q+ +    Y
Sbjct: 204 LYEAVVRESMHVIETAEGMARRGLVLKLLTSLKQICDHPALY 245


>gi|169237324|ref|YP_001690529.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
 gi|167728840|emb|CAP15732.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
          Length = 469

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 55  KIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEGKI 109
           K+  L+ ++++      I+      F  D+++             D+    ++ +  G+ 
Sbjct: 331 KLDTLDNLLKRHYDDRTIIFTANNDFAYDISQEFIVPCITHQTQTDERTEILERFRTGEY 390

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L                 N+ +  S      ++ Q + RI    + +        +Y 
Sbjct: 391 SMLVTSQVL--DEGIDVPAANVGIILSGSASKRQYAQRLGRILRPTEDR----EPARLYE 444

Query: 170 LIAQNTIDELVLQRLRT 186
           LI  +T+++ V +R R 
Sbjct: 445 LITDDTMEQYVSKRRRQ 461


>gi|119470571|ref|ZP_01613274.1| ATP-dependent helicase HepA [Alteromonadales bacterium TW-7]
 gi|119446272|gb|EAW27549.1| ATP-dependent helicase HepA [Alteromonadales bacterium TW-7]
          Length = 964

 Score = 37.8 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       + +      +L         G N Q+  + LV F L  + +  +
Sbjct: 530 FHEGMSIIERDRAAAFFADEYDNAQILLCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G  + V ++    +NT  E++L+
Sbjct: 588 QRIGRLD-----RIGQTQDVNIHVPYFENTAQEVLLR 619


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score = 37.8 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ ++     +V  +   F   +AR                   K    +  
Sbjct: 244 EKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 303

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 304 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 361

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 362 ACERYAMSLPD-IEAYIEQKI 381


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score = 37.8 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ ++     +V  +   F   +AR                   K    +  
Sbjct: 243 EKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 302

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 303 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 360

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 361 ACERYAMSLPD-IEAYIEQKI 380


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score = 37.8 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ ++     +V  +   F   +AR                   K    +  
Sbjct: 244 EKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 303

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 304 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 361

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 362 ACERYAMSLPD-IEAYIEQKI 381


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score = 37.8 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQE 103
           EKI  L  ++ ++     +V  +   F   +AR                   K    +  
Sbjct: 244 EKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNR 303

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + +G++ +L A   +         G N +  + L +D E++   I R             
Sbjct: 304 FQKGQLEILVATDVAARGLHI--DGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISF 361

Query: 164 AVFVYYLIAQNTIDELVLQRL 184
           A   Y +   + I+  + Q++
Sbjct: 362 ACERYAMSLPD-IEAYIEQKI 381


>gi|195569077|ref|XP_002102538.1| GD19449 [Drosophila simulans]
 gi|194198465|gb|EDX12041.1| GD19449 [Drosophila simulans]
          Length = 793

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY 42
           + Y +F +       GE I         ++  Q        
Sbjct: 638 EIYERFLK-SLGYNPGEKILGIYILVLLLRLRQFCCHPGLM 677


>gi|186475006|ref|YP_001856476.1| SNF2-like protein [Burkholderia phymatum STM815]
 gi|184191465|gb|ACC69430.1| SNF2-related protein [Burkholderia phymatum STM815]
          Length = 990

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR---QAGFKRAVFVY 168
           L         GLNLQ+    L+FFS+ W     +Q I R+             +R + ++
Sbjct: 447 LLIAADLAQVGLNLQH-ARKLIFFSIPWSPIAVEQWIGRLDRLGSAALEHQPGERNIDIF 505

Query: 169 YLIAQNTIDELVLQRL------RTKSTIQDLLLNALKKETIH 204
            +  +  +DE V+  L           +    +N + +  + 
Sbjct: 506 TICQRGQVDERVVSILDDFGIFERSIRLDGDEINIVSQHIVE 547


>gi|311269517|ref|XP_003132525.1| PREDICTED: helicase-like transcription factor-like [Sus scrofa]
          Length = 459

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 4/43 (9%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + +             + A   +     ++  Q+   
Sbjct: 339 KIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 381


>gi|261881069|ref|ZP_06007496.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
 gi|270332187|gb|EFA42973.1| DNA methylase N-4/N-6 [Prevotella bergensis DSM 17361]
          Length = 736

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + K  +L         GLN Q   +  +F SL +  E         G+ R  + G   
Sbjct: 343 FADKKFRVLITKLKIAQFGLNYQN-CHNQIFASLDFSFESTY-----QGIRRSYRFGQTD 396

Query: 164 AVFVYYLIAQNT---IDELVLQRLRTKSTIQDLLLNALKKETIHV 205
            V +Y LI  +T   +   +L++ ++   +Q  +  A  +    +
Sbjct: 397 DVNIY-LIITDTMQNVRSSILEKQKSFVDMQHKMSEATSRNIKQI 440


>gi|260946988|ref|XP_002617791.1| hypothetical protein CLUG_01250 [Clavispora lusitaniae ATCC 42720]
 gi|238847663|gb|EEQ37127.1| hypothetical protein CLUG_01250 [Clavispora lusitaniae ATCC 42720]
          Length = 544

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 41/140 (29%), Gaps = 31/140 (22%)

Query: 6   KFQRELYCDLQGENIEAFNS-----------ASKTVKCLQLANGAVYYDEEK-------- 46
           + Q E Y  L  ++I+A N             +  ++  +  N    +D  +        
Sbjct: 389 EMQIEWYKKLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPGPPFTTD 448

Query: 47  HWKEVHDEKIKALEVIIEKAN--AAPIIVAYH----------FNSDLARLQKAFPQGRTL 94
                +  K+  L+ +++K     + +++             +               + 
Sbjct: 449 EHLIYNSGKMIILDKMLKKFKAAGSRVLIFSQMSRLLDILEDYCYFREYEYCRIDGSTSH 508

Query: 95  DKDPCTIQEWNEGKIPLLFA 114
           +     I ++N      ++ 
Sbjct: 509 EDRIEAIDDYNAPDSKKIYL 528


>gi|120597470|ref|YP_962044.1| ATP-dependent helicase HepA [Shewanella sp. W3-18-1]
 gi|189039399|sp|A1RFP5|RAPA_SHESW RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|120557563|gb|ABM23490.1| SNF2-related protein [Shewanella sp. W3-18-1]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  + LV F L  + +  +Q I R+      + G K  + ++ 
Sbjct: 558 AQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHL 611

Query: 170 LIAQNTIDELVLQ 182
              ++T  E ++Q
Sbjct: 612 PYLEDTAQERLMQ 624


>gi|313242328|emb|CBY34484.1| unnamed protein product [Oikopleura dioica]
          Length = 763

 Score = 37.8 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNE---GKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                      T  K    I+ +N+    +  L      + G G NL  G N ++ F   
Sbjct: 686 NIDYFRIDGSVTASKRTAFIESFNDLEDPRARLFLVSTKAGGIGTNL-VGANRVIIFDSS 744

Query: 139 WDLEEHQQMIERIGVTRQR 157
           W+     Q + R+    Q 
Sbjct: 745 WNPAHDVQSLFRVYRFGQN 763


>gi|14590756|ref|NP_142826.1| putative helicase [Pyrococcus horikoshii OT3]
 gi|3257311|dbj|BAA29994.1| 902aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 902

 Score = 37.8 bits (86), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 17/194 (8%)

Query: 5   HKFQR-ELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
            + ++ +   +L  +     +        +       Y+  +     +  E    LE I+
Sbjct: 317 RQLEKLKRVLELGKKIGNKDSKLEVISDII------AYHIRKGEKVIIFTEFRDTLEYIL 370

Query: 64  EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123
            K                   +          +    I++++E     L         GL
Sbjct: 371 GKLPGILRERHGILLESDDIAKLHGGMKSEEIERE--IKKFHERSD--LLVSTDVASEGL 426

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL    ++++ +   W   + +Q + RI    QR+      V     +A  T D  VL  
Sbjct: 427 NLH-VASVVINYEAPWSPIKLEQRVGRIWRLNQRKETNAYTV----FLATET-DLDVLNN 480

Query: 184 LRTKSTIQDLLLNA 197
           L  K       + +
Sbjct: 481 LYKKIMNIKEAIGS 494


>gi|146294389|ref|YP_001184813.1| ATP-dependent helicase HepA [Shewanella putrefaciens CN-32]
 gi|189029434|sp|A4YAN1|RAPA_SHEPC RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|145566079|gb|ABP77014.1| SNF2-related protein [Shewanella putrefaciens CN-32]
          Length = 968

 Score = 37.8 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  + LV F L  + +  +Q I R+      + G K  + ++ 
Sbjct: 558 AQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHL 611

Query: 170 LIAQNTIDELVLQ 182
              ++T  E ++Q
Sbjct: 612 PYLEDTAQERLMQ 624


>gi|223935786|ref|ZP_03627701.1| SNF2-related protein [bacterium Ellin514]
 gi|223895387|gb|EEF61833.1| SNF2-related protein [bacterium Ellin514]
          Length = 943

 Score = 37.8 bits (86), Expect = 1.00,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D +I  L  +++K +   +++                  ++     F +G TL +    
Sbjct: 456 KDPRILWLVDLLQKLDPQKVLLICRTIEKVEAIDAALRRHVSIKTGIFHEGLTLVQRDRN 515

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
              + E     L         G N Q+  + LV F L  + E  +Q I R+      + G
Sbjct: 516 AAWFAEADGARLLLCSEIGSEGRNFQF-AHHLVLFDLPLNPELLEQRIGRLD-----RIG 569

Query: 161 FKRAVFVY 168
             + + ++
Sbjct: 570 QTKDIHIH 577


>gi|319427743|gb|ADV55817.1| SNF2-related protein [Shewanella putrefaciens 200]
          Length = 968

 Score = 37.8 bits (86), Expect = 1.00,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  + LV F L  + +  +Q I R+      + G K  + ++ 
Sbjct: 558 AQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIHL 611

Query: 170 LIAQNTIDELVLQ 182
              ++T  E ++Q
Sbjct: 612 PYLEDTAQERLMQ 624


>gi|68637903|emb|CAI36108.1| superfamily II DNA/RNA helicase [Pseudomonas syringae pv.
           phaseolicola]
          Length = 752

 Score = 37.8 bits (86), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 684 SWRIGQKQDVRVIFFGFIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 741


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|153002296|ref|YP_001367977.1| ATP-dependent helicase HepA [Shewanella baltica OS185]
 gi|189029429|sp|A6WSX5|RAPA_SHEB8 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|151366914|gb|ABS09914.1| SNF2-related protein [Shewanella baltica OS185]
          Length = 968

 Score = 37.8 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I  +A  A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               ++T  E +++
Sbjct: 611 LPYLEDTAQERLMK 624


>gi|212224218|ref|YP_002307454.1| Hef nuclease [Thermococcus onnurineus NA1]
 gi|212009175|gb|ACJ16557.1| helicase-associated endonuclease for fork-structured DNA
           [Thermococcus onnurineus NA1]
          Length = 789

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 75/209 (35%), Gaps = 36/209 (17%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI----IEKANAAPI 71
           + +  ++     +  +  ++    +Y   +     +   K++ L+ +    +EK   + I
Sbjct: 306 EDKRTKSSRELMEDPRMRKV----IYLLVQAKELGIDHPKMEKLKELVKAQLEKKPNSKI 361

Query: 72  IVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
           IV  ++                     + +  ++  +G +  +   T++ ++ G+  +L 
Sbjct: 362 IVFTNYRDTGKKIVEELRAMSVSAERFIGQASRSNDRGMSQKQQKETLERFSRGEFSVLV 421

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
           A  +    GL++    ++++F+          Q   R G  R  +        V  L+A+
Sbjct: 422 AT-SVGEEGLDVPEV-DLVIFYEPVPSAIRSIQRRGRTGRHRPGR--------VVILMAK 471

Query: 174 NTIDELVLQRLRTKSTIQDLLLNALKKET 202
            T DE      R K       +  + +E 
Sbjct: 472 GTRDEAYYWSSRRKERGMFEAIRKIAREL 500


>gi|315127723|ref|YP_004069726.1| ATP-dependent helicase HepA [Pseudoalteromonas sp. SM9913]
 gi|315016237|gb|ADT69575.1| ATP-dependent helicase HepA [Pseudoalteromonas sp. SM9913]
          Length = 964

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       + +      +L         G N Q+  + LV F L  + +  +
Sbjct: 530 FHEGMSIIERDRAAAFFADEYDNAQILLCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 587

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G  + V ++    +NT  E++L+
Sbjct: 588 QRIGRLD-----RIGQTQDVNIHVPYFENTAQEVLLR 619


>gi|70607390|ref|YP_256260.1| hypothetical protein Saci_1657 [Sulfolobus acidocaldarius DSM 639]
 gi|68568038|gb|AAY80967.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 443

 Score = 37.4 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 34/211 (16%)

Query: 1   MKQYHKF---QRELYCDLQGENIE-------AFNSASKTVKCLQLANG-------AVYYD 43
           +K+Y +    ++E Y +L+G+  E         NS +   K ++LA+         + + 
Sbjct: 242 IKEYVEMTSEEKERYKELRGKLKEFLSSRGMRLNSLNDFYKLIRLASKDKKAREALLAWH 301

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDP 98
           E          KI+ L  ++ + +   IIV        ++     L        + D+  
Sbjct: 302 ESLRLAVNSRAKIEKLRELLREFHDRKIIVFTRDTELAYDISKEFLIPVVTYKTSKDERF 361

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             + ++ EG   ++ A                 +        +       +R  + R  +
Sbjct: 362 EILSKFKEGNYRVIVAS----------TVFDEGVDIPDAEIAIIMGGYGTKRQFIQRLGR 411

Query: 159 AGFKR--AVFVYYLIAQNTIDELVLQRLRTK 187
               R     +  ++ + T D  + +R   K
Sbjct: 412 ILRGRGKKALLIEIVTKGTADYRLSKRREYK 442


>gi|330900195|gb|EGH31614.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 311

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 189 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 242

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 243 SWRIGQKQDVRVIFFGFIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 300


>gi|117617895|ref|YP_855406.1| ATP-dependent helicase HepA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|189029408|sp|A0KGL5|RAPA_AERHH RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|117559302|gb|ABK36250.1| RNA polymerase associated protein RapA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 955

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPL 111
             + + + VI  +A  A  +       +  R          L++D  +      EG   +
Sbjct: 488 SARQQKVLVICSEAATAIALEEALRTREGIRGAVFHEGMSILERDKASAYFAQQEGGAQV 547

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L         G N Q+  + LV F L  + +  +Q I R+      + G +  V ++   
Sbjct: 548 LLCS-EIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPY 600

Query: 172 AQNT 175
            + T
Sbjct: 601 LEGT 604


>gi|331250618|ref|XP_003337916.1| DNA repair protein rad5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309316906|gb|EFP93497.1| DNA repair protein rad5 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 607

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 42/167 (25%), Gaps = 40/167 (23%)

Query: 2   KQYHKFQRELYCDLQGENI-----EAFNSASKTVKCLQLANGAVYYDEEKHWKEV---HD 53
           + Y K             +      + +   + V   QL +     ++            
Sbjct: 465 QIYEKNHETFVVQFGKNRVGGQGWNSSDFFGELVDLRQLCDHPALIEKGPGINNYGWNES 524

Query: 54  EKIKA----LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            KI      ++  +       +++   F   L                            
Sbjct: 525 SKIVHLVGDVKDFLCSGAVNRVVIFSEFKRFLEM-------------------------- 558

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
            +L A   + G G++L      +      W+    +Q ++R+    Q
Sbjct: 559 -ILLATIKTAGVGIDL-RCAQKVYIMEPTWNPAVEEQAVDRLYRIGQ 603


>gi|209693956|ref|YP_002261884.1| ATP-dependent helicase HepA [Aliivibrio salmonicida LFI1238]
 gi|254789672|sp|B6EPV7|RAPA_ALISL RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|208007907|emb|CAQ78037.1| RNA polymerase-associated protein RapA (ATP-dependent helicase
           hepA) [Aliivibrio salmonicida LFI1238]
          Length = 969

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  ++++     +++                         F +G ++ +    
Sbjct: 489 FDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKA 548

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   EG   +L         G N Q+  N LV F L ++ +  +Q I R+      +
Sbjct: 549 AAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLEQRIGRLD-----R 601

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    Q T
Sbjct: 602 IGQKRDIDIHVPYLQGT 618


>gi|73668740|ref|YP_304755.1| Hef nuclease [Methanosarcina barkeri str. Fusaro]
 gi|72395902|gb|AAZ70175.1| ATP-dependent RNA helicase, EIF-4A family [Methanosarcina barkeri
           str. Fusaro]
          Length = 938

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
             + +  +   +G T  +    + ++  G+  +L A  +    GL++    ++++F+   
Sbjct: 405 RFVGQASRRKDKGLTQKQQVEVLDKFRAGEYNVLVAT-SVAEEGLDIPST-DLVLFYEPI 462

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
                  Q   R G   + +        V  L+ + T DE      ++K      +LN++
Sbjct: 463 PSEIRSIQRKGRTGRQHKGR--------VIILVTKGTRDEAYYWSSKSKEK---RMLNSM 511


>gi|224371108|ref|YP_002605272.1| RapA [Desulfobacterium autotrophicum HRM2]
 gi|223693825|gb|ACN17108.1| RapA [Desulfobacterium autotrophicum HRM2]
          Length = 905

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140
           +      F Q  TL +   +   + E     L         G N Q+  + LV F L  +
Sbjct: 465 ITMKIARFTQDMTLVQRDRSAAWFAEPLGAELMICSEIGSEGRNFQF-AHHLVMFDLPDN 523

Query: 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            E  +Q I R+      + G    + ++   A ++
Sbjct: 524 PELVEQRIGRLD-----RIGQHHPIVIHVPYAHDS 553


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 10/142 (7%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
             D+  +   A           Q+        +E+  + + D     L  ++   +    
Sbjct: 233 LIDIDPKEATASTI-------HQVCIKVSEDHKEEALQTIIDRCNPFLM-LVFCKSKERA 284

Query: 72  IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           I  Y +               +  K    ++ + + K  +L A   +         G   
Sbjct: 285 IEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVASDIAARGLD--VEGVTQ 342

Query: 132 LVFFSLWWDLEEHQQMIERIGV 153
           +V F +  D + +   I R G 
Sbjct: 343 VVNFDIPHDPDWYVHRIGRTGR 364


>gi|78190817|gb|ABB29730.1| SNF2 family DNA-dependent ATPase domain-containing protein
           [Monosiga brevicollis]
          Length = 171

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 59  LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117
              I+++      +    +             G    +    + E+N +  I +L    +
Sbjct: 95  FLDIVQEELLDKHLPEVTYRR--------LDGGVPAQQRHDIVVEFNEDPSIDVLLLTTS 146

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLE 142
             G GL L  G + ++F    W+  
Sbjct: 147 VGGLGLTLT-GADTVIFLEHDWNPM 170


>gi|330977482|gb|EGH77428.1| DNA topoisomerase III [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 145

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 23  RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 76

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL--------LNALKKETIHV 205
             + G K+ V V +     +     LQ +  K  +            L++L ++   V
Sbjct: 77  SWRIGQKQDVRVIFFGYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSV 134


>gi|257454149|ref|ZP_05619422.1| RNA polymerase-associated protein RapA [Enhydrobacter aerosaccus
           SK60]
 gi|257448477|gb|EEV23447.1| RNA polymerase-associated protein RapA [Enhydrobacter aerosaccus
           SK60]
          Length = 949

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            TL +       + + +   +         G N Q+  + LV F L  + +  +Q I R+
Sbjct: 515 MTLLERDQAAAYFADIEGAQVLLASEIGSEGRNFQF-ASDLVLFDLPANPDTLEQRIGRL 573

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
                 + G +  + ++    + T  E + +
Sbjct: 574 D-----RIGQQNEITIHVPFVEGTATERMYR 599


>gi|315050314|ref|XP_003174531.1| hypothetical protein MGYG_02060 [Arthroderma gypseum CBS 118893]
 gi|311339846|gb|EFQ99048.1| hypothetical protein MGYG_02060 [Arthroderma gypseum CBS 118893]
          Length = 566

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 8/122 (6%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLF 113
           ++  +++I     A ++        L     ++  G  ++        +++      +L 
Sbjct: 367 LRKEKLLIFATMPAQVLWLESVLQHLDLDAHSYRAGLKVEDRQILTDTFHKSPNKCYILI 426

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                C  GLNLQ     LVF+            +E+  + R ++ G  + + ++ L  +
Sbjct: 427 TSFWVCCTGLNLQGHCRNLVFWDSAPI------SVEQQALGRLKRVGATKTIRLFRLYVE 480

Query: 174 NT 175
           NT
Sbjct: 481 NT 482


>gi|330952513|gb|EGH52773.1| DEAD/DEAH box helicase [Pseudomonas syringae Cit 7]
          Length = 752

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I +  +  + +L  +P     GL+L      + F    +++   Q         R
Sbjct: 630 RREDWILDQVDRGVDVLITNPELVKTGLDLLDF-PTIAFMQTGYNVYTVQ-----QAARR 683

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
             + G K+ V V +     +     LQ +  K  +   
Sbjct: 684 SWRIGQKQNVRVIFFGYIGSSQITCLQLMAKKIAVSQS 721


>gi|293370317|ref|ZP_06616874.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292634612|gb|EFF53144.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 1000

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 57/188 (30%), Gaps = 18/188 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                +A     + +K L  A    +  E      +   K + +E ++ K      +   
Sbjct: 771 GDAKKDAGLRLMRQIKLLIKACSVPHLIEGYSGDGIPS-KTRYIERLVRKIPGKVAVGCT 829

Query: 76  HF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                             R            K    + E++     +L     S    +N
Sbjct: 830 SIAAFDLYEKRLRECFPDRPVFTVKGDVAFKKRQSIVTEFDSTVNGILVCTQQSLSSSVN 889

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +    ++++    W   +  Q         R  +   K    V+Y+  ++++++ ++  +
Sbjct: 890 IPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKELKDVHYVTYKDSVEQNLMALV 943

Query: 185 RTKSTIQD 192
            TK  + +
Sbjct: 944 LTKERLNE 951


>gi|152012467|gb|AAI50169.1| Si:ch211-278b8.3 protein [Danio rerio]
          Length = 579

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/187 (8%), Positives = 44/187 (23%), Gaps = 49/187 (26%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEV----------- 51
            Y+KF       ++       +  ++     +L +      +    +             
Sbjct: 394 IYNKFI--SLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVH 451

Query: 52  ---------------------HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAF 88
                                   K++ +  ++E         ++       L  +++  
Sbjct: 452 SDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVL 511

Query: 89  PQGRTL-----------DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                             +    I  +  + +  +        G G+ L  G N +V F 
Sbjct: 512 RNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLT-GANRVVIFD 570

Query: 137 LWWDLEE 143
             W+   
Sbjct: 571 PSWNPAT 577


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG-NILVFFSLWWDLEEHQQMIERI 151
             +K    ++++  G++P+L     +      L     + ++ F L  D E++   I R 
Sbjct: 289 PQNKREQLLEQFRTGELPVLVGTDVAAR---GLHIDAVSHVINFDLPHDPEDYVHRIGRT 345

Query: 152 GV 153
             
Sbjct: 346 AR 347


>gi|295658214|ref|XP_002789669.1| MIZ zinc finger protein [Paracoccidioides brasiliensis Pb01]
 gi|226283154|gb|EEH38720.1| MIZ zinc finger protein [Paracoccidioides brasiliensis Pb01]
          Length = 507

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              KR   V  L+ +++++ELV Q    K    + ++  +K  
Sbjct: 223 LTQKRHFVVINLVRKHSVEELVKQLQNRKIISSEQVIREMKNR 265


>gi|85711786|ref|ZP_01042842.1| Probable ATP-dependent RNA helicase HepA [Idiomarina baltica OS145]
 gi|85694401|gb|EAQ32343.1| Probable ATP-dependent RNA helicase HepA [Idiomarina baltica OS145]
          Length = 884

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G +L +     + +  ++   P+L         G N Q+  + LV F L  + +  +
Sbjct: 454 FHEGMSLLERDRAAEFFADDDNGSPILLCS-EIGSEGRNFQFV-HQLVLFDLPENPDLLE 511

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181
           Q I R+      + G    + +Y    +++ DE +L
Sbjct: 512 QRIGRLD-----RIGQTHDIAIYLPYTEDS-DEGIL 541


>gi|294055537|ref|YP_003549195.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614870|gb|ADE55025.1| SNF2-related protein [Coraliomargarita akajimensis DSM 45221]
          Length = 945

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNS-----------DLARLQKAFPQGRTLDKDPCTIQE 103
           +IK L  ++ + N + +++                 ++      F +  TL +       
Sbjct: 465 RIKWLAELLRELNNSKVLLICRSKEKVEAIYSALLEEINVKAAVFHEELTLLQRDRNAAW 524

Query: 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 163
           + + +   +         G N Q+  + LV F L  + E  +Q I R+      + G   
Sbjct: 525 FADPEGARILLCSEIGSEGRNFQF-AHHLVLFDLPMNPELLEQRIGRLD-----RIGQTE 578

Query: 164 AVFVY 168
            + V+
Sbjct: 579 TIRVH 583


>gi|297746282|emb|CBI16338.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 91   GRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
            G    +    + ++N  +    +      +C   + L    + ++ F   W+     + +
Sbjct: 1036 GGVPSRKQAALNKFNNKESGRFVFLLEIRACLSSIKL-SSVDTIIIFDSDWNPVNDLRAL 1094

Query: 149  ERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
             +I +           + ++ L +  T++E     +  K  + 
Sbjct: 1095 NKITID-----SQFEKIKLFRLYSPFTVEEK--SLILAKHDMA 1130


>gi|83954759|ref|ZP_00963470.1| hypothetical protein NAS141_16098 [Sulfitobacter sp. NAS-14.1]
 gi|83841043|gb|EAP80214.1| hypothetical protein NAS141_16098 [Sulfitobacter sp. NAS-14.1]
          Length = 853

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 97  DPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
                  +N       +L A       GLNL      +V     W+    +Q I R+   
Sbjct: 701 RRLLQSAFNRASSWPMVLLAQSRVGREGLNLHEACRTVVILHAEWNPGIVEQQIGRVDRK 760

Query: 155 RQR----------QAGFKRA-VFVYYLIAQNTIDELVLQRLR 185
                        +A      + ++ ++   T D+   Q L+
Sbjct: 761 GSCWLKDLDYWHERAEGDPPRIRIHPVVVSGTYDDHNWQVLK 802


>gi|330432060|gb|AEC17119.1| ATP-dependent helicase HepA [Gallibacterium anatis UMN179]
          Length = 972

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 55/181 (30%), Gaps = 24/181 (13%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGA---VYYDEEKHWKEVHDEKIKALE 60
            +   ++  +L  +   A    +   K   Q +       +    +      D +I+ L 
Sbjct: 439 KRILHQVKLELPKQYANAIKVVNLLNKTVQQNSLYPEVLFHQLNPEAAWWDFDPRIEWLL 498

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQ-------------KAFPQGRTLDKDPCTIQEWNEG 107
             ++  +   +++       + +L+                                 E 
Sbjct: 499 TFLKNHSQEKVLIICQQTETVLQLEKILREKEGIRSAVFHEKMSIVERDRAAAYFAQQED 558

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
              +L +  +    G N Q+   ++  F+L  + +  +Q I R+      + G  R V +
Sbjct: 559 GAKVLLSS-SIGAEGRNFQFACRLV-LFNLPVNPDVLEQSIGRLD-----RIGQTRDVQI 611

Query: 168 Y 168
           Y
Sbjct: 612 Y 612


>gi|170070638|ref|XP_001869656.1| transcription termination factor 2 [Culex quinquefasciatus]
 gi|167866546|gb|EDS29929.1| transcription termination factor 2 [Culex quinquefasciatus]
          Length = 991

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 3/60 (5%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKALEVIIEKANAAP 70
            ++++        ++  Q+        +     E +      + +      ++ + N   
Sbjct: 803 KDDVKQHEILVLLLRLRQICCHPGLIHKMLDDDEGNFHDVSGNNEEAPELDLLAQLNNLK 862


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +A  +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|302759218|ref|XP_002963032.1| hypothetical protein SELMODRAFT_404554 [Selaginella moellendorffii]
 gi|300169893|gb|EFJ36495.1| hypothetical protein SELMODRAFT_404554 [Selaginella moellendorffii]
          Length = 1398

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 70  PIIVAYHFN----SDLARLQKAFPQGRTLDKDPC--TIQEWNEGKIPLLFAHPASCGHGL 123
            I+V   +      + A         R   +     +I E+ +  I  +        +GL
Sbjct: 571 KILVFSTWQVLDLLEHALKSNKLSWVRLKHRRQMGSSILEFKKKNIQAMLLP-----NGL 625

Query: 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           NL      ++      +       +E   + R  + G +    V+  I      E + + 
Sbjct: 626 NLTE-AQHVILVEPLLNPA-----VEAQAINRVHRIGQRPKTLVHRFI------ENIYKM 673

Query: 184 LRTKSTI 190
            + K+ +
Sbjct: 674 SQQKTNL 680


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +A  +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAISL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|166366739|ref|YP_001659012.1| helicase protein [Microcystis aeruginosa NIES-843]
 gi|166089112|dbj|BAG03820.1| probable helicase protein [Microcystis aeruginosa NIES-843]
          Length = 500

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K        K++ L  +I + +  PI++  +     +    + L  A      + +
Sbjct: 309 HRESKEISSGTQGKLRVLAELICEHHPEPILIFTNDNATVYRISESFLIPAITHQTPVKE 368

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + +G+  +L                  I +  S        ++ I+R+G   +
Sbjct: 369 RHEILTRFRQGEYKILVTSHVLNEGVD--VPEARIAIILSGTGS---TREYIQRLGRVLR 423

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL 179
           +     +   +Y +IA+NT +E 
Sbjct: 424 KGQQEDKRAILYEVIAENTTEEK 446


>gi|120554239|ref|YP_958590.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120324088|gb|ABM18403.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 982

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 98  PCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
              ++ +  G  P+ L         G+NL +  + ++ + L W +    Q   RI     
Sbjct: 489 AAAVEAFGTGNSPVRLMLATDVASEGVNLHHQCHNIIHYDLPWSIITLIQRNGRID---- 544

Query: 157 RQAGFKRAVFVYYLIAQ 173
            + G K    + YL+ +
Sbjct: 545 -RFGQKYPPIIRYLMVE 560


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    +Q + EGK+P+L A   +           + +V + L  + E++   I R  
Sbjct: 289 PQKKREQLLQRFQEGKLPMLVATDVAARGLHI--PDVSRIVNYDLPQNAEDYVHRIGRTA 346

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                      A   Y       I+  + Q++
Sbjct: 347 RAGASGDAISFACEAYVYSLPE-IEAYIHQKI 377


>gi|170290318|ref|YP_001737134.1| helicase domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174398|gb|ACB07451.1| helicase domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 975

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
              + +  +L A       GLNLQ   +IL+ + + W L + +Q I R+      + G +
Sbjct: 462 FERDPRARVLIAT-DVAAEGLNLQ-VAHILINYEVPWSLIKLEQRIGRVW-----RLGQR 514

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKS 188
           R V +Y L   N  D   L+ +  K 
Sbjct: 515 REVEIYTLFMANKADSTALRSIYEKL 540


>gi|126659499|ref|ZP_01730632.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
 gi|126619233|gb|EAZ89969.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
          Length = 493

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K      + K++ L  ++ + +   +++  +     +      L  A      + +
Sbjct: 310 HREAKEIAAGTEGKLRVLAELVCEHHQDSLLIFTNDNATVYRISQEFLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + EG    L                   +             + ++R+G   +
Sbjct: 370 RHDILTRFREGIYKSLVTSHVLNEGV---DVPEVKVAIIISGTSSAR--EYVQRLGRILR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           +  G  +   +Y ++A++T +E + QR + 
Sbjct: 425 KGKGKNKLATLYEIVAEDTSEERISQRRKE 454


>gi|10803640|ref|NP_046038.1| hypothetical protein VNG7093 [Halobacterium sp. NRC-1]
 gi|16120082|ref|NP_395670.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|169237281|ref|YP_001690487.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
 gi|2822371|gb|AAC82877.1| unknown [Halobacterium sp. NRC-1]
 gi|10584184|gb|AAG20805.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|167728347|emb|CAP15151.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
          Length = 469

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 55  KIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEGKI 109
           K+  L+ ++++      I+      F  D+++             D+    ++ +  G+ 
Sbjct: 331 KLDTLDNLLKRHYNDRTIIFTANNDFAYDISQEFIVPCITHQTQTDERTEILERFRTGEY 390

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L                 N+ +  S      ++ Q + RI    + +        +Y 
Sbjct: 391 SMLVTSQVL--DEGIDVPAANVGIILSGSASKRQYAQRLGRILRPTEDR----EPARLYE 444

Query: 170 LIAQNTIDELVLQRLRT 186
           LI  +T+++ V +R R 
Sbjct: 445 LITDDTMEQYVSKRRRQ 461


>gi|15791152|ref|NP_280976.1| Hef nuclease [Halobacterium sp. NRC-1]
 gi|169236908|ref|YP_001690108.1| Hef nuclease [Halobacterium salinarum R1]
 gi|10581766|gb|AAG20456.1| ATP-dependent RNA helicase homolog eIF-4A [Halobacterium sp. NRC-1]
 gi|167727974|emb|CAP14762.1| nuclease domain protein / probable ATP-dependent helicase
           [Halobacterium salinarum R1]
          Length = 784

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T  +   T+ E+  G   +L    +    GL++    ++++FF          Q   R
Sbjct: 410 GMTQTEQRETLAEFRNGDFEVLV-STSVAEEGLDVPEV-DLVLFFEPVPTAIRSVQRKGR 467

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
            G     +        V  L+A++T DE      R +       L +LK  
Sbjct: 468 TGRQTAGR--------VVVLLAEDTRDEAYFWISRRREQEMTEELQSLKGR 510


>gi|109287965|ref|YP_654659.1| hypothetical protein MIV087L [Invertebrate iridescent virus 3]
 gi|123878654|sp|Q196X3|VF022_IIV3 RecName: Full=Putative helicase 087L
 gi|106073588|gb|ABF82117.1| hypothetical protein MIV087L [Aedes taeniorhynchus iridescent
           virus]
          Length = 980

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 23/150 (15%)

Query: 70  PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG------KIPLLFAH--PASCGH 121
               + +F     R      +  T  +    I  +N         I  +           
Sbjct: 417 KATPSSNFAKPQKRYAIFTNETSTDAQTKQLISAFNNPKNLKGEYISTILGSRVIMEGFS 476

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA----VFVYYLIA----- 172
             N+Q         S  W+  E  Q+I R           K      V +Y+ ++     
Sbjct: 477 FKNIQSE----YILSPHWNYSETSQIIARGLRLGSHNDLKKNNIKFEVRIYHYVSLANKN 532

Query: 173 --QNTIDELVLQRLRTKSTIQDLLLNALKK 200
               +ID  + +    K      +L  +K+
Sbjct: 533 YPAESIDLHMYEIAEEKDLEIQKILRYIKE 562


>gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
 gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
          Length = 444

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 40/154 (25%), Gaps = 16/154 (10%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF---NSDLAR----------LQKAFPQ 90
           +       H  K +   ++I   N      +  F     DL R             A   
Sbjct: 228 DNITQILYHTAKHEKTPLLIGLLNRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSG 287

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
                K    I+++  G + ++ A   +             +  + L    E++   I R
Sbjct: 288 DIPQKKREKIIKDFQSGAVNIVVATDVAARGLHI--PDVTHVFNYDLPQVAEDYVHRIGR 345

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                        A   Y       I+  +  +L
Sbjct: 346 TARAGASGTAISFACEEYVYSLPE-IEHYIHNKL 378


>gi|6707720|sp|O37319|NTP1_HAEPV RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|2460172|gb|AAB96624.1| nucleoside triphosphatase I [Heliothis armigera entomopoxvirus 'L']
          Length = 646

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFK 162
           N     +     +  G         N ++   + W+  E +Q++ R              
Sbjct: 440 NNDGKNIKVCIFSYAGSEGISFKCVNDIIILDMPWNESELKQIMGRSIRLNSHNDLPLEN 499

Query: 163 RAVFVYYLIA----QNTIDELVLQRLRTKSTIQDLLLNALKK---ETIH 204
           R V V+++I+    + ++D+ +L  ++ K +  +++ + LK    E+IH
Sbjct: 500 RYVNVHFIISYTNNRKSVDKEILDIIKDKQSKINVVFDLLKSISIESIH 548


>gi|227504269|ref|ZP_03934318.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227199156|gb|EEI79204.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 543

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 11/140 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDL-----ARLQKAFPQGRTLDKDPCTIQEWNE 106
              K +A++ I+ +      ++   +   L                +  K     Q++ E
Sbjct: 392 SSTKHRAVDKILAQHAGQQALIIGGYVDQLEELGKHLDAPVIDGKTSNAKREKLFQQFRE 451

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G + +L          ++L      +     +      Q+  +R+G   + +A  K A F
Sbjct: 452 GALQILVVS-KVANFSIDLPEAALAIQVSGTFGS---RQEEAQRLGRLLRPKADGKEATF 507

Query: 167 VYYLIAQNTID-ELVLQRLR 185
            Y L+ +++ID E  L R R
Sbjct: 508 -YTLVTRDSIDAEYALHRQR 526


>gi|118377404|ref|XP_001021881.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89303648|gb|EAS01636.1| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 987

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 27/76 (35%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
                ++ +L         G+NL    +++    ++    E  +      + R  + G  
Sbjct: 901 FKKVPEVRILIMSIEQAASGINLIEANHVIFMHPIFGVSYEKSRSTYAQCIGRALRVGQS 960

Query: 163 RAVFVYYLIAQNTIDE 178
           + V       +N+I++
Sbjct: 961 KPVHATLYCTKNSIEQ 976


>gi|113952800|ref|YP_729277.1| helicase [Synechococcus sp. CC9311]
 gi|113880151|gb|ABI45109.1| possible helicase [Synechococcus sp. CC9311]
          Length = 461

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 31/198 (15%)

Query: 4   YHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 63
           Y +   E       E+       +      Q+A        ++  +              
Sbjct: 268 YRQRVAEGLVRSDAES------LAVLTALRQIAAEFKLPAAQQLIQR------------- 308

Query: 64  EKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFAHPAS 118
            +    PI+V   F   L  L +          +  D+    +  +  G+  LL A  A+
Sbjct: 309 LRQQHKPIVVFSSFVDPLLLLHERLGGVLLTGRQKPDQRQFAVDCFQAGETDLLLATFAA 368

Query: 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 178
            G G  L    + +V     W   +           R  + G +  +  ++L      D+
Sbjct: 369 GGLGFTLHRSQD-VVLLERPWTPGDID-----QAEDRCHRIGMEGGLTSHWLQL-GLADQ 421

Query: 179 LVLQRLRTKSTIQDLLLN 196
           LV   + +K+   +LLL 
Sbjct: 422 LVDGLVASKAERIELLLG 439


>gi|331000034|ref|ZP_08323730.1| protein, SNF2 family [Parasutterella excrementihominis YIT 11859]
 gi|329573182|gb|EGG54799.1| protein, SNF2 family [Parasutterella excrementihominis YIT 11859]
          Length = 1183

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 11/39 (28%)

Query: 1    MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGA 39
            +  Y   +      LQ E I    +     K  Q A   
Sbjct: 1143 LAIYENIRTRTLSGLQSEKINPIEALMALTKLRQAACSP 1181


>gi|156539035|ref|XP_001599281.1| PREDICTED: similar to SWI/SNF related, matrix associated, actin
           dependent regulator of chromatin, subfamily a-like 1,
           partial [Nasonia vitripennis]
          Length = 224

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 2/143 (1%)

Query: 9   RELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANA 68
           +E+    +    ++   A K    LQ  + +    E+     V D      + +I   + 
Sbjct: 83  KEMEAASKEMQKKSLTGAQKHGALLQYYSESSKAKEKAVCNYVTDLIENQQKFLIFAHHK 142

Query: 69  APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ-EWNEGKIPLLFAHPASCGHGLNLQY 127
             +    +  +    L          ++    +        + +      +   G+ L  
Sbjct: 143 NMMDAISNLLTSKKVLFIRIDGKTHPEQRKQFVDTFQQNENVLVAVLSITAANAGITLTA 202

Query: 128 GGNILVFFSLWWDLEEHQQMIER 150
              ++VF  L W+     Q  +R
Sbjct: 203 -AQLVVFAELSWNPGILCQAEDR 224


>gi|269137964|ref|YP_003294664.1| ATP-dependent helicase HepA [Edwardsiella tarda EIB202]
 gi|267983624|gb|ACY83453.1| ATP-dependent helicase HepA [Edwardsiella tarda EIB202]
 gi|304558012|gb|ADM40676.1| RNA polymerase associated protein RapA [Edwardsiella tarda FL6-60]
          Length = 968

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G +L +       +   E    +L         G N Q+  N LV F L ++ +  +
Sbjct: 534 FHEGMSLIERDRAAAYFASQEEGAQVLLCS-EIGSEGRNFQF-ANRLVMFDLPFNPDLLE 591

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + +Y    + T
Sbjct: 592 QRIGRLD-----RIGQARDIQIYVPCLEGT 616


>gi|256842520|ref|ZP_05548022.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374900|ref|ZP_06984857.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|301308009|ref|ZP_07213963.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|256735876|gb|EEU49208.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267400|gb|EFI09056.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|300833479|gb|EFK64095.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 1000

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 59/190 (31%), Gaps = 18/190 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                +A     + +K L  A    +  E      + + K + +E ++ K      +   
Sbjct: 771 GDAKKDAGLRLMRQIKLLIKACSVPHLIEGYSGDGIPN-KTRYIERLVRKIPGKVAVGCT 829

Query: 76  HF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                             R            K    + E++     +L     S    +N
Sbjct: 830 SIAAFDLYESRLRECFPDRPVFVVKGDVAFKKRQSIVTEFDSTINGILVCTQQSLSSSVN 889

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +    ++++    W   +  Q         R  +   K    V+Y+  ++++++ ++  +
Sbjct: 890 IPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKELKDVHYVTYKDSVEQNLMALV 943

Query: 185 RTKSTIQDLL 194
            TK  + + +
Sbjct: 944 LTKERLNEFI 953


>gi|255015071|ref|ZP_05287197.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 1000

 Score = 37.0 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 59/190 (31%), Gaps = 18/190 (9%)

Query: 16  QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 75
                +A     + +K L  A    +  E      + + K + +E ++ K      +   
Sbjct: 771 GDAKKDAGLRLMRQIKLLIKACSVPHLIEGYSGDGIPN-KTRYIERLVRKIPGKVAVGCT 829

Query: 76  HF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
                             R            K    + E++     +L     S    +N
Sbjct: 830 SIAAFDLYESRLRECFPDRPVFVVKGDVAFKKRQSIVTEFDSTINGILVCTQQSLSSSVN 889

Query: 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
           +    ++++    W   +  Q         R  +   K    V+Y+  ++++++ ++  +
Sbjct: 890 IPTCNDVILESLQWNIPKMEQFY------FRFIRLDSKELKDVHYVTYKDSVEQNLMALV 943

Query: 185 RTKSTIQDLL 194
            TK  + + +
Sbjct: 944 LTKERLNEFI 953


>gi|330831287|ref|YP_004394239.1| RNA polymerase-associated protein rapA [Aeromonas veronii B565]
 gi|328806423|gb|AEB51622.1| RNA polymerase-associated protein rapA [Aeromonas veronii B565]
          Length = 927

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPL 111
             + + + VI  +A  A  +       +  R          L++D  +      EG   +
Sbjct: 460 SARQQKVLVICSEAATAIALEEALRTREGIRGAVFHEGMSILERDKASAYFAQQEGGAQV 519

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L         G N Q+  + LV F L  + +  +Q I R+      + G +  V ++   
Sbjct: 520 LLCS-EIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPY 572

Query: 172 AQNT 175
            + T
Sbjct: 573 LEGT 576


>gi|257456998|ref|ZP_05622179.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
 gi|257445707|gb|EEV20769.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
          Length = 434

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 96  KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR 155
           +    I  +  GK  +L           +L   G  +        ++  +     I    
Sbjct: 332 ERKQIIARFRSGKTRILITS--------DLSARGLDIADIDYIVQMQLSKDADAFIHRAG 383

Query: 156 QRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +     K+ V +   +  +  +  +LQ L  K  I
Sbjct: 384 RTGRAGKKGVNI---VIGDEYELRILQALEKKLGI 415


>gi|172039355|ref|YP_001805856.1| DNA repair helicase [Cyanothece sp. ATCC 51142]
 gi|171700809|gb|ACB53790.1| probable DNA repair helicase [Cyanothece sp. ATCC 51142]
          Length = 493

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K      + K++ L  ++ + +   +++  +     +      L  A      + +
Sbjct: 310 HREAKEIAAGTEGKLRVLAELVCEHHQDSLLIFTNDNATVYRISQEFLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + EG    L                   +             + ++R+G   +
Sbjct: 370 RHDILTRFREGIYKSLVTSHVLNEGV---DVPEVKVAIIISGTSSAR--EYVQRLGRILR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186
           +  G  +   +Y ++A++T +E + QR + 
Sbjct: 425 KGKGKNKLATLYEIVAEDTSEERISQRRKE 454


>gi|253682914|ref|ZP_04863701.1| putative helicase [Clostridium phage D-1873]
 gi|253560840|gb|EES90302.1| putative helicase [Clostridium phage D-1873]
          Length = 879

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 49/178 (27%), Gaps = 16/178 (8%)

Query: 23  FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY------- 75
                +    L +      Y E  H +  +  K     +         I           
Sbjct: 658 MEIIQQITLLLNICQHPQTYREYNHLETPNKYKKVIELLNKWNDEQVSIGCRSLKEINCY 717

Query: 76  ---HFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 132
                 +   R         ++++    I+E    K  +L     S    ++     N +
Sbjct: 718 TLLIKKNFPNRKLFIITGSISMERRREIIKELKNYKNGILLCTQQSLSSSIS-IDYINKI 776

Query: 133 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190
           +  +L W+     Q   R       Q        ++++   N+++  +L  +  K  +
Sbjct: 777 IITALSWNFSSLSQFFFRFIRYTSTQHK-----EIHFITYANSLESNLLGLIMAKENL 829


>gi|17553716|ref|NP_498514.1| hypothetical protein F57B9.3 [Caenorhabditis elegans]
 gi|532817|gb|AAA21169.1| Hypothetical protein F57B9.3 [Caenorhabditis elegans]
          Length = 363

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/119 (5%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 43  DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS----------DLARLQKAFPQGR 92
            +     +  + K   L  +++ +     ++  +              +      F    
Sbjct: 202 RQFYINVQKDEWKFNCLCDLLKTSRETQALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNM 261

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
             ++    ++++N     +L            +    ++++ + +  ++E +     R 
Sbjct: 262 EHNEREDMVKDFNSRNTRVLVTTDLMAR---GMNIRKSLIINYDVSGNMENYMLRNGRQ 317


>gi|170039498|ref|XP_001847570.1| transcription termination factor 2 [Culex quinquefasciatus]
 gi|167863047|gb|EDS26430.1| transcription termination factor 2 [Culex quinquefasciatus]
          Length = 989

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 3/60 (5%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH------DEKIKALEVIIEKANAAP 70
            ++++        ++  Q+        +     E +      + +      ++ + N   
Sbjct: 801 KDDVKQHEILVLLLRLRQICCHPGLIHKMLDDDEGNFHDVSGNNEEAPELDLLAQLNNLK 860


>gi|327310558|ref|YP_004337455.1| type III restriction enzyme, res subunit [Thermoproteus uzoniensis
           768-20]
 gi|326947037|gb|AEA12143.1| type III restriction enzyme, res subunit [Thermoproteus uzoniensis
           768-20]
          Length = 651

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 20/159 (12%)

Query: 53  DEKIKALEVIIEKAN--AAPIIVAYHF------NSDLARLQKAFPQGRTLDKDPCTIQE- 103
             KI     I+++       ++V   F        D  R +    +  T ++   +    
Sbjct: 482 SSKIPIAVEIVKREVALGHKVLVFTQFLEQAKAVYDKLREESIRSELITSEERDRSSAFS 541

Query: 104 -WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   ++                 ++ V  S      +  Q + R+      +A  K
Sbjct: 542 RFLSGAAKVVVTTTVL--DEGVDVPDADVAVIVSGSGSKRQMLQRVGRVVR----RAPGK 595

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
               VY LIA+ TI+E     L     + D++  ++ ++
Sbjct: 596 SVARVYELIARGTIEE----ALSESRHVDDVIEESVCRK 630


>gi|149190305|ref|ZP_01868579.1| ATP-dependent helicase HepA [Vibrio shilonii AK1]
 gi|148835912|gb|EDL52875.1| ATP-dependent helicase HepA [Vibrio shilonii AK1]
          Length = 969

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G KR + V+    +NT
Sbjct: 594 QRIGRLD-----RIGQKRDIDVHVPYLENT 618


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|294634981|ref|ZP_06713498.1| RNA polymerase-associated protein RapA [Edwardsiella tarda ATCC
           23685]
 gi|291091580|gb|EFE24141.1| RNA polymerase-associated protein RapA [Edwardsiella tarda ATCC
           23685]
          Length = 968

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G +L +       +   E    +L         G N Q+  N LV F L ++ +  +
Sbjct: 534 FHEGMSLIERDRAAAYFASQEEGAQVLLCS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 591

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + +Y    +NT
Sbjct: 592 QRIGRLD-----RIGQARDIQIYVPCLENT 616


>gi|225389883|ref|ZP_03759607.1| hypothetical protein CLOSTASPAR_03632 [Clostridium asparagiforme
           DSM 15981]
 gi|225044076|gb|EEG54322.1| hypothetical protein CLOSTASPAR_03632 [Clostridium asparagiforme
           DSM 15981]
          Length = 1081

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 10/36 (27%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 47
             + +G   E F   +   +  Q+        E   
Sbjct: 841 RSEGEGLGEERFQVLADLTRLRQICCDPRLCYENYK 876


>gi|325297384|ref|YP_004257301.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324316937|gb|ADY34828.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 439

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 17/173 (9%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH--DEKIKALEVIIEK 65
           +R L      E I  F    +  K   L    V       +K V    +K+  L  ++  
Sbjct: 166 RRFLLSATDAEEIPRFTGLRRVRKLDFLRPEHVLSSRLHLYKVVSPVKDKLDTLFRLLCC 225

Query: 66  ANAAPIIVAYHFNSDLAR----------LQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
                 +V  +    + R            + F  G   D+    + ++  G  P+L   
Sbjct: 226 IGNESTLVFCNHRESVERVGEYLRRMKMYCEVFHGGMGQDERERALYKFRNGSCPVLV-S 284

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                 GL++    N++ +             I R G T + +      V  Y
Sbjct: 285 TDLAARGLDIPEIKNVVHY----HLPVSEDSFIHRNGRTARWENEGNAYVLAY 333


>gi|145300304|ref|YP_001143145.1| ATP-dependent helicase HepA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189029409|sp|A4SR75|RAPA_AERS4 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|142853076|gb|ABO91397.1| RNA polymerase associated protein RapA [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 955

 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPL 111
             + + + VI  +A  A  +       +  R          L++D  +      +G   +
Sbjct: 488 SARQQKVLVICSEAATAIALEEALRTREGIRGTVFHEGMSILERDKASAYFAQEDGGAQV 547

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L         G N Q+  + LV F L  + +  +Q I R+      + G +  V ++   
Sbjct: 548 LLCS-EIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQQNTVEIHVPY 600

Query: 172 AQNT 175
            + T
Sbjct: 601 LEGT 604


>gi|90580792|ref|ZP_01236595.1| ATP-dependent helicase HepA [Vibrio angustum S14]
 gi|90438060|gb|EAS63248.1| ATP-dependent helicase HepA [Vibrio angustum S14]
          Length = 972

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  +++      ++V                         F +G ++ +    
Sbjct: 490 FDPRVNWLLDMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIERDKA 549

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +    +L         G N Q+  N LV F L  + +  +Q I R+      +
Sbjct: 550 AAYFAQEDDGAQVLLCS-EIGSEGRNFQF-ANQLVMFDLPSNPDLLEQRIGRLD-----R 602

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    + T
Sbjct: 603 IGQKREIEIHVPYLEGT 619


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETETITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYH---FNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +   F   +AR+ +                K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|307106391|gb|EFN54637.1| hypothetical protein CHLNCDRAFT_9749 [Chlorella variabilis]
          Length = 370

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 23/145 (15%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE--------EKHWKEVHDEKIKA 58
            +         + +E         +  +  N    +                    K+  
Sbjct: 226 MKDGAALAHMEKEVEG-KLMMLVQQLRKCCNHPYLFPGSEPDFDGRTGEDIVHASGKMDV 284

Query: 59  LEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPCTIQEWNE 106
           L+ +++K       +++   FN  L  L+                    +    I+ +N 
Sbjct: 285 LDRLLKKLKRRGHRVVLFSQFNMQLDILEDFMNMRGYKYSRLDGTTNRVQRMIDIKLFNR 344

Query: 107 GKIP--LLFAHPASCGHGLNLQYGG 129
                 +   +  + G G+NLQ   
Sbjct: 345 PGSDTFVYLLNTRAGGLGVNLQTAD 369


>gi|302557430|ref|ZP_07309772.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475048|gb|EFL38141.1| SNF2/helicase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 363

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 8/42 (19%), Gaps = 2/42 (4%)

Query: 3   QYHKFQRELYCDLQ--GENIEAFNSASKTVKCLQLANGAVYY 42
            Y    RE    +                    Q+ +    Y
Sbjct: 264 LYEAVVRESMAAIGTARGMGRRGLVLKLLTSLKQICDHPALY 305


>gi|302885039|ref|XP_003041413.1| hypothetical protein NECHADRAFT_87952 [Nectria haematococca mpVI
           77-13-4]
 gi|256722314|gb|EEU35700.1| hypothetical protein NECHADRAFT_87952 [Nectria haematococca mpVI
           77-13-4]
          Length = 1138

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGHGLNLQYGGNILVFF 135
              +  +  A+ Q          I++W++      +  A+      G+N+    +   F 
Sbjct: 798 KRIMFYVDTAWIQQDKASHRNRVIRDWSDPSTDCEIFIANINITATGVNMHGACSTGAFL 857

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
               + +  Q       + R  + G +  V  + L
Sbjct: 858 CWHLNFQVMQ-----QAMARLNRIGQREPVDWWLL 887


>gi|320155233|ref|YP_004187612.1| RNA polymerase associated protein RapA [Vibrio vulnificus MO6-24/O]
 gi|319930545|gb|ADV85409.1| RNA polymerase associated protein RapA [Vibrio vulnificus MO6-24/O]
          Length = 969

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q I R+      + G KR + ++    Q T  E VL R
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLQGTAQE-VLAR 625


>gi|27364844|ref|NP_760372.1| ATP-dependent helicase HepA [Vibrio vulnificus CMCP6]
 gi|41017731|sp|Q8DCG1|RAPA_VIBVU RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|27360989|gb|AAO09899.1| RNA polymerase associated protein rapA [Vibrio vulnificus CMCP6]
          Length = 969

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q I R+      + G KR + ++    Q T  E VL R
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLQGTAQE-VLAR 625


>gi|89075566|ref|ZP_01161971.1| ATP-dependent helicase HepA [Photobacterium sp. SKA34]
 gi|89048706|gb|EAR54278.1| ATP-dependent helicase HepA [Photobacterium sp. SKA34]
          Length = 972

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  +++      ++V                         F +G ++ +    
Sbjct: 490 FDPRVNWLLDMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIERDKA 549

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +    +L         G N Q+  N LV F L  + +  +Q I R+      +
Sbjct: 550 AAYFAQEDDGAQVLLCS-EIGSEGRNFQF-ANQLVMFDLPSNPDLLEQRIGRLD-----R 602

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    + T
Sbjct: 603 IGQKREIEIHVPYLEGT 619


>gi|326471360|gb|EGD95369.1| hypothetical protein TESG_02855 [Trichophyton tonsurans CBS 112818]
          Length = 1144

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 56   IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNE--GKIPLLF 113
            ++  +++I     A ++        L     ++  G  +         ++    K  +L 
Sbjct: 940  LRKEKLLIFVTMPAQVLWLESVLQLLDLDAHSYRAGLNVQDRQILADTFHRSPDKCYILI 999

Query: 114  AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173
                 C  GLNLQ     LVF+            +E+  + R ++ G  + + ++ L  +
Sbjct: 1000 TSFWVCCTGLNLQGHCRNLVFWDSAPI------SVEQQALGRLKRVGATKTIRLFRLYVE 1053

Query: 174  NT 175
            NT
Sbjct: 1054 NT 1055


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E+I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETESITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E+I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETESITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E+I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETESITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|292653988|ref|YP_003533886.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291369858|gb|ADE02086.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 466

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 53  DEKIKALEVIIEKANAAPIIVAY---HFNSDLARL--QKAFPQGRTLDKDPCTIQEWNEG 107
            +K+  L+ +I++ +    I+      F  ++++             D+    ++ +  G
Sbjct: 330 TKKLDTLDNLIKRHHDDRAIIFTANNDFAYEISQEFIVPCITHQTKTDERTEILERFRTG 389

Query: 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +   + A       G++     N+ +  S      ++ Q + RI      +    +   +
Sbjct: 390 EYS-MLATSQVLDEGID-VPAANVGIILSGSASKRQYAQRLGRILRPTDDR----QPARL 443

Query: 168 YYLIAQNTIDELVLQRLRT 186
           Y +I ++T++  V QR R 
Sbjct: 444 YEIITEDTMETYVSQRRRE 462


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E+I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETESITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 31/192 (16%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 62
            Y          ++ E+I A        +  Q           + +    +EK   L  +
Sbjct: 210 AYEHMNEPEKLVVETESITAA-------RVRQ-----------RIYFPSDEEKQTLLLGL 251

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLL 112
           + ++  A  +V  +  + + R+ +   +               K    +  + +G++ +L
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            A   +         G   +  + L +D E++   I R     +       A   Y +  
Sbjct: 312 VATDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 369

Query: 173 QNTIDELVLQRL 184
            + I+  + Q++
Sbjct: 370 PD-IEAYIEQKI 380


>gi|330834348|ref|YP_004409076.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
 gi|329566487|gb|AEB94592.1| DNA repair helicase RAD25 [Metallosphaera cuprina Ar-4]
          Length = 538

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTL 94
             Y+     K +   K+  ++ I+E+     II+   +      + +           + 
Sbjct: 379 RVYNAMNMIKGLTKGKLVKIKEIVERERDKKIIIFTQYVEHANEIARLTGAKLLTGQMSK 438

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +   T+ E+   K  +L            L      +            +Q ++R+G  
Sbjct: 439 KERDLTLDEFKNQKSGVLVLTTV---GDEGLDIPDASVGILVAGTS--SRRQYVQRLGRL 493

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDE 178
            +  +G K AV +Y LIA+ T +E
Sbjct: 494 LRNNSGGKVAV-LYELIAKGTSEE 516


>gi|123296350|emb|CAM28175.1| transcription termination factor, RNA polymerase II [Mus musculus]
          Length = 956

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 4/68 (5%), Positives = 12/68 (17%), Gaps = 11/68 (16%)

Query: 21  EAFNSASKTVKCLQLANGAVYYDEEKHWKEV-----------HDEKIKALEVIIEKANAA 69
              +  S+ ++  Q           +    V              K      ++      
Sbjct: 889 STVHVLSQLLRLRQCCCHLSLLKSVRDAPSVVISTVGCSRDPASGKRLVCSSLLWDGEET 948

Query: 70  PIIVAYHF 77
                  +
Sbjct: 949 HFFCFTLY 956


>gi|37681109|ref|NP_935718.1| ATP-dependent helicase HepA [Vibrio vulnificus YJ016]
 gi|41017628|sp|Q7MHE6|RAPA_VIBVY RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|37199859|dbj|BAC95689.1| RNA polymerase-associated protein HepA [Vibrio vulnificus YJ016]
          Length = 969

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
           Q I R+      + G KR + ++    Q T  E VL R
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLQGTAQE-VLAR 625


>gi|154493718|ref|ZP_02033038.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
 gi|154086928|gb|EDN85973.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
          Length = 436

 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 18/138 (13%)

Query: 53  DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQ 102
            +K++ L  ++ +      ++  ++   + R+             F  G    +    + 
Sbjct: 214 KDKLETLYKLLGELKGGSALIFCNYRETVERVSNYLTEMGVDNEYFHGGMEQPERERALS 273

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +  G   +          GL++    N ++ + L    E +     R            
Sbjct: 274 HFRNGSATVFI-STDLASRGLDIPEVKN-VIHYHLPVSEEAYVHRNGRTARMNA------ 325

Query: 163 RAVFVYYLIAQNTIDELV 180
             V    L A+ TI E +
Sbjct: 326 EGVAYLILNAEETIPEYI 343


>gi|302822220|ref|XP_002992769.1| hypothetical protein SELMODRAFT_448890 [Selaginella moellendorffii]
 gi|300139414|gb|EFJ06155.1| hypothetical protein SELMODRAFT_448890 [Selaginella moellendorffii]
          Length = 592

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 154 TRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
             +   G  + V +   I ++++ E + Q    K  
Sbjct: 17  CGRSSIGQTKNVSIKRFIVKDSVGERMQQVQARKQR 52


>gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus]
          Length = 651

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 44  EEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQ 102
             +    +      ++E I        P+I    F            +G T  +    ++
Sbjct: 459 CHESRVMIFSSFRDSVEEIAEMLLQHRPVIRVMTFV---GHASGKNTKGFTQKEQLQVVR 515

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
           ++ +G    L         GL++    ++++ F          Q + R G  RQ +    
Sbjct: 516 QFRDGGYNTLV-STCVGEEGLDI-GEVDLIICFDAQKSPIRLIQRMGRTGRKRQGR---- 569

Query: 163 RAVFVYYLIAQNTIDELVL-QRLRTKSTIQDLLLNALKKETIHV 205
               +  ++A+   +E    Q    K  I   +  +  ++ + +
Sbjct: 570 ----IVVILAEG-REERTYNQSQSNKKNIYKAI--SGNRQVLRL 606


>gi|238801686|ref|YP_002922742.1| gp70 [Burkholderia phage BcepIL02]
 gi|237688061|gb|ACR15063.1| gp70 [Burkholderia phage BcepIL02]
          Length = 4667

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   K      +  EGK  +L         G+N+Q            W     +Q
Sbjct: 2929 FMRDNKEHAKKERLFADMREGKKRVLIG-GKDMETGVNVQKRLYTEEHLDAPWFPASVEQ 2987

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +     + + D  +      K+   +  LN 
Sbjct: 2988 REGRIIR----QGNQNKQVRIRAWATKGSYDSTMWGMNARKARFIEQALNG 3034


>gi|224499222|ref|ZP_03667571.1| SNF2 family helicase [Listeria monocytogenes Finland 1988]
          Length = 54

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 170 LIAQNTIDELVLQRLRTKSTIQDLLLN 196
           +I + TI+E +    + K  + D L+ 
Sbjct: 1   MITKGTIEERIFDLQKKKQALVDELIQ 27


>gi|119571323|gb|EAW50938.1| chromodomain helicase DNA binding protein 1-like, isoform CRA_c
           [Homo sapiens]
          Length = 445

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 35/154 (22%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 288 KYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLTEASG 347

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLDK---------------- 96
           K+  L+ ++    +    +++       L  LQ        L +                
Sbjct: 348 KLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRDYLKRVKISVFLPLCKGYSYE 407

Query: 97  ----------DPCTIQEWNEGKIPLLFAHPASCG 120
                         I+ + +  I +      +  
Sbjct: 408 RVDGSVRGEERHLAIKNFGQQPIFVFLLSTRAGR 441


>gi|328949357|ref|YP_004366694.1| helicase [Treponema succinifaciens DSM 2489]
 gi|328449681|gb|AEB15397.1| helicase domain protein [Treponema succinifaciens DSM 2489]
          Length = 595

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARL-----QKAFPQGRTLDKDPCTIQEWNEGKI 109
           K K ++ ++EK     I++   F + L  +                +      ++  GKI
Sbjct: 432 KNKIVQELVEKFKDDKILIIGQFLTHLEIIAKLLNVPIITGKTKNSERDIIYDDFRSGKI 491

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L          ++L      +     +   +E  Q + RI          +R    + 
Sbjct: 492 RVLVVS-KVANFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILR------PKERTSRFFT 544

Query: 170 LIAQNTIDE 178
           LI + T++E
Sbjct: 545 LITRGTVEE 553


>gi|10719930|sp|P57092|C18CA_PAEPP RecName: Full=Parasporal crystal protein cry18Ca; AltName: Full=78
           kDa crystal protein; AltName: Full=Crystaline parasporal
           protoxin; AltName: Full=Parasporal delta-endotoxin
           CryXVIIIC(a)
 gi|9622200|gb|AAF89668.1|AF169251_1 parasporal crystal protein Cry18Ca1 [Paenibacillus popilliae]
          Length = 695

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER-----IGVTRQR 157
           ++      +L     +    L+L +  +I++    W   E      +R     +      
Sbjct: 207 QFQVSDDQVLLLPLFAQAVTLHLTFVRDIIINADEWNIPEAQLNTYKRYLKQYVAQYSNY 266

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
                   F      +NT++      L  K+ +   +L+
Sbjct: 267 ALSTYEEAFRARFYPRNTVE----NMLEFKTFMTLNVLD 301


>gi|305663150|ref|YP_003859438.1| helicase domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377719|gb|ADM27558.1| helicase domain protein [Ignisphaera aggregans DSM 17230]
          Length = 1004

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           R++    + R         +   +G+I +          GLNLQ   NI++ +   W   
Sbjct: 467 RIEIPGWRERRNPDIEDLKKYLGQGRIKV-VISTDVASEGLNLQ-VANIIINYEPTWSPI 524

Query: 143 EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
           + +Q + R+      + G +R V  Y +      D+ VL  L  K       L   K
Sbjct: 525 KIEQRLGRVW-----RLGQERDVTSYTIFLDIRSDKDVLDILYKKLLALGRSLQESK 576


>gi|242398676|ref|YP_002994100.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
 gi|242265069|gb|ACS89751.1| ATP-dependent RNA helicase, putative [Thermococcus sibiricus MM
           739]
          Length = 772

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 77/217 (35%), Gaps = 31/217 (14%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           ++ Y    ++LY + +    ++     +  +  +     V   E        D+  + + 
Sbjct: 297 LRAY---LKKLYEESKKGRAKSTKELIQDPRMKKAVALLVQAKELGLDHPKLDKLKELIR 353

Query: 61  VIIEKANAAPIIVAYHFNSD------------------LARLQKAFPQGRTLDKDPCTIQ 102
             ++K  ++ IIV  ++                     + +  K   +G +  K    + 
Sbjct: 354 SQLKKKPSSKIIVFTNYRETAKKIVKELLEDHIKAVRFVGQASKENDKGLSQKKQKQVLN 413

Query: 103 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162
            +++G+  +L A  +    GL++    ++++F+          Q   R G  +  +    
Sbjct: 414 LFSQGEFNVLVAT-SVGEEGLDVPEV-DLVIFYEPVPSAIRSIQRKGRTGRHKPGR---- 467

Query: 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
               V  L+A+ T DE+     R K      +L  ++
Sbjct: 468 ----VVILMAKGTRDEIYYWSSRHKEKQMISILEKVE 500


>gi|212693469|ref|ZP_03301597.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
 gi|212663982|gb|EEB24556.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 71/215 (33%), Gaps = 21/215 (9%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVHDEKIKALEV 61
            +F R              ++  + ++ ++L   A    +  E      + + K + +E 
Sbjct: 757 EEFCRICELYYNSTGDTRKDAGLRLMRQIKLLIKACSVPHLIEGYRGDGIPN-KTRYIER 815

Query: 62  IIEKANAAPIIVAYHF-----------NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP 110
           +I +      +                     R            K    + E++     
Sbjct: 816 LIRRIPGKVAVGCTSIASFDLYESHLRERFPERPLFVVKGDVAFKKRQGIVTEFDSTVNG 875

Query: 111 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170
           +L     S    +N+    N ++  SL W++ + +Q   R      +         V+Y+
Sbjct: 876 ILVCTQQSLSSSVNIPT-CNDVILESLQWNIPKMEQFYFRFIRLDSKDLKD-----VHYV 929

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
             ++++++ ++  + TK  + + + +   KE   +
Sbjct: 930 TYKDSVEQNLMALVLTKERLNEFIKSGEVKEQSEI 964


>gi|38640380|ref|NP_944303.1| Bcep22gp75 [Burkholderia phage Bcep22]
 gi|33860447|gb|AAQ55007.1| Bcep22gp75 [Burkholderia phage Bcep22]
          Length = 4602

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 87   AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                 +   K      +  EGK  +L         G+N+Q            W     +Q
Sbjct: 2829 FMRDNKEHAKKERLFADMREGKKRVLIG-GKDMETGVNVQKRLYSEEHLDAPWFPASVEQ 2887

Query: 147  MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
               RI      Q    + V +     + + D  +      K+   +  LN 
Sbjct: 2888 REGRIIR----QGNQNKQVRIRAWATKGSYDSTMWGMNARKARFIEQALNG 2934


>gi|52842509|ref|YP_096308.1| ATP-dependent helicase HepA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629620|gb|AAU28361.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + LV F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|323446767|gb|EGB02816.1| hypothetical protein AURANDRAFT_4085 [Aureococcus anophagefferens]
          Length = 308

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 22/109 (20%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNSA---------SKTVKCLQLANGAVYY------ 42
           +K Y    + QR  Y  +  ++    N+          +  ++  ++ N    +      
Sbjct: 200 VKLYIGMTEMQRLWYTKILSKDAHTLNALGGPDRVQLLNILMQLRKVCNHPYLFEGAEPG 259

Query: 43  --DEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA 87
               +      +  K+  +  ++ K  A  + +++       L  L+  
Sbjct: 260 PPFMDGPHLWENTGKLVLMSKLLPKLMAQDSRVLIFSQMTRMLDILEDY 308


>gi|255560782|ref|XP_002521404.1| DNA repair helicase rad5,16, putative [Ricinus communis]
 gi|223539303|gb|EEF40894.1| DNA repair helicase rad5,16, putative [Ricinus communis]
          Length = 1109

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 3/58 (5%), Positives = 11/58 (18%), Gaps = 6/58 (10%)

Query: 4    YHKFQRELYCDLQGE------NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
            Y + + +     +             N     ++  Q  +  +               
Sbjct: 996  YTQLENDSRAQFREYAAAGTVKQNYVNILLMLLRLRQACDHPLLVRGIDSNLFGRSSM 1053


>gi|148359836|ref|YP_001251043.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|148281609|gb|ABQ55697.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + L+ F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLILFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|55379328|ref|YP_137178.1| Hef nuclease [Haloarcula marismortui ATCC 43049]
 gi|55232053|gb|AAV47472.1| ATP-dependent RNA helicase homolog eIF-4A [Haloarcula marismortui
           ATCC 43049]
          Length = 852

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T  +   T+  +  G+  +L    +    GL++    ++++F+          Q   R
Sbjct: 412 GMTQTQQQETLDRFRNGEFEVLV-STSVAEEGLDVPEV-DLVLFYEPVPTAIRAIQRKGR 469

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
            G   + +        V  L+A++T DE    + R         LN LK
Sbjct: 470 TGRQAEGR--------VVVLLAEDTRDEAYFWKARNDQKRMKRELNELK 510


>gi|54295138|ref|YP_127553.1| ATP-dependent helicase HepA [Legionella pneumophila str. Lens]
 gi|53754970|emb|CAH16458.1| RNA polymerase-associated protein HepA [Legionella pneumophila str.
           Lens]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + LV F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|296107886|ref|YP_003619587.1| ATP-dependent helicase HepA [Legionella pneumophila 2300/99 Alcoy]
 gi|295649788|gb|ADG25635.1| ATP-dependent helicase HepA [Legionella pneumophila 2300/99 Alcoy]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + LV F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|269961316|ref|ZP_06175682.1| RNA polymerase-associated protein rapA [Vibrio harveyi 1DA3]
 gi|269833982|gb|EEZ88075.1| RNA polymerase-associated protein rapA [Vibrio harveyi 1DA3]
          Length = 969

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G KR + ++    + T
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLKGT 618


>gi|153835571|ref|ZP_01988238.1| RNA polymerase-associated protein RapA [Vibrio harveyi HY01]
 gi|148867846|gb|EDL67075.1| RNA polymerase-associated protein RapA [Vibrio harveyi HY01]
          Length = 969

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G KR + ++    + T
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLKGT 618


>gi|307611138|emb|CBX00782.1| RNA polymerase-associated protein HepA [Legionella pneumophila
           130b]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + LV F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|260904266|ref|ZP_05912588.1| type III restriction protein res subunit [Brevibacterium linens
           BL2]
          Length = 544

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 11/141 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLA-----RLQKAFPQGRTLDKDPCTIQEWNE 106
            D K+  +  ++     A I+V   +   L                   +     +++  
Sbjct: 396 SDAKLPIVRELVADHPKAQILVIGQYLDQLEEVGRELDAPVLTGQTPESQRQELFRDFRS 455

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           G IP+L          ++L      +     +   +E  Q + RI   ++          
Sbjct: 456 GAIPVLVVS-KVANFSVDLPAASVAIQVSGAFGSRQEEAQRLGRILRPKEDSGSATF--- 511

Query: 167 VYYLIAQNTIDELVLQRLRTK 187
            Y ++A +T+DE      R +
Sbjct: 512 -YTVVAADTVDEH-FAAQRRR 530


>gi|170739571|ref|YP_001768226.1| type III restriction protein res subunit [Methylobacterium sp.
           4-46]
 gi|168193845|gb|ACA15792.1| type III restriction protein res subunit [Methylobacterium sp.
           4-46]
          Length = 476

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQ-EWNEGKIP--LLFAHPASCGHGLNLQ--YGGNILVFFS 136
            R +     G    +     + ++  G +   +     +   H   L        LV   
Sbjct: 342 QRWRVGEINGERPAEANEATRLDFQRGLLDALVFTVTESISLHRHELPGGERPRALVVHD 401

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           +     + QQ+  R     Q          +YY  A++T++E +
Sbjct: 402 MRHSAIQLQQIEGRCHRDGQHA-------VIYYAYAEDTVEERI 438


>gi|54298189|ref|YP_124558.1| ATP-dependent helicase HepA [Legionella pneumophila str. Paris]
 gi|53751974|emb|CAH13400.1| RNA polymerase-associated protein HepA [Legionella pneumophila str.
           Paris]
          Length = 958

 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   E    +L         G N Q+  + LV F L  + +  +
Sbjct: 522 FHEGLTIIERDRAAAYFAEQENGAQVLVCS-EIGSEGRNFQF-SHHLVLFDLPLNPDLLE 579

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           Q I R+      + G    + ++      T  E + +
Sbjct: 580 QRIGRLD-----RIGQNHPIEIHVPYLAGTAQEKLFR 611


>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013494|sp|A5E0U9|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 444

 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 45/158 (28%), Gaps = 11/158 (6%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP 98
             Y  E      +   K +    ++         V       L     +        +  
Sbjct: 237 PSYVKEAYLTSILKLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERT 296

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            ++  +  G   +L A   +            ++V F +  D ++    + R     ++ 
Sbjct: 297 NSLHRFKAGAARILIATDVASRGLDI--PTVELVVNFDIPADPDDFIHRVGRTARAGRKG 354

Query: 159 AGFKRAVFVYYLIAQNTID--ELVLQRLRTKSTIQDLL 194
                      +I +  I+  E + +R+  K  + + +
Sbjct: 355 DA-------ISIIGEKDIERIESIEERINKKMELLEGV 385


>gi|302843304|ref|XP_002953194.1| hypothetical protein VOLCADRAFT_93875 [Volvox carteri f. nagariensis]
 gi|300261581|gb|EFJ45793.1| hypothetical protein VOLCADRAFT_93875 [Volvox carteri f. nagariensis]
          Length = 1876

 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 95   DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
            +K    +  +  +    +L         GL+L    + ++      D+   QQ++ R   
Sbjct: 1509 EKREEALSRFQHDPHCGVLVM-DQLGAVGLDL-SFVSYVLLMEPLEDVSLEQQVVSR--- 1563

Query: 154  TRQRQAGFKRAVFVYYLIAQNTIDE 178
                + G +RAV V  L+ + + +E
Sbjct: 1564 --AHRMGARRAVEVETLVMRGSAEE 1586


>gi|160932541|ref|ZP_02079931.1| hypothetical protein CLOLEP_01379 [Clostridium leptum DSM 753]
 gi|156868500|gb|EDO61872.1| hypothetical protein CLOLEP_01379 [Clostridium leptum DSM 753]
          Length = 412

 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNL 125
              +IV Y+F+ +L  L+  +        +    +          +      +   G N 
Sbjct: 279 HPKMIVFYNFDYELDILKNLYYGENVEIAEWNGHKHQPIPTCDSWVYLVQYTAGAEGWNC 338

Query: 126 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185
                I+ F+S  +  +  +Q   R            + ++ Y+L +++ ID  + + L 
Sbjct: 339 ISTDTIV-FYSQNYSYKIMKQSAGRTDRLNTP----FKDLYYYHLKSRSGIDLAISRALS 393

Query: 186 TKST 189
            K  
Sbjct: 394 EKRN 397


>gi|90411937|ref|ZP_01219945.1| ATP-dependent helicase HepA [Photobacterium profundum 3TCK]
 gi|90327195|gb|EAS43567.1| ATP-dependent helicase HepA [Photobacterium profundum 3TCK]
          Length = 972

 Score = 36.6 bits (83), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  +++      ++V                         F +G ++ +    
Sbjct: 490 FDPRVNWLLDMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIERDKA 549

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +    +L         G N Q+  N LV F L  + +  +Q I R+      +
Sbjct: 550 AAYFAQEDDGAQVLLCS-EIGSEGRNFQF-ANQLVMFDLPNNPDLLEQRIGRLD-----R 602

Query: 159 AGFKRAVFVYYLIAQNT 175
            G +R + ++    + T
Sbjct: 603 IGQQRDIEIHVPHLEGT 619


>gi|153843859|ref|ZP_01993600.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|149745283|gb|EDM56534.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
          Length = 260

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 70  FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 127

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 128 QRIGRLD-----RIGQNRDIDIHVPYLKGT 152


>gi|153840670|ref|ZP_01993337.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|149745658|gb|EDM56797.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
          Length = 416

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 206 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 263

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 264 QRIGRLD-----RIGQNRDIDIHVPYLKGT 288


>gi|67763822|ref|NP_659208.2| helicase-like transcription factor isoform 2 [Mus musculus]
 gi|148702944|gb|EDL34891.1| mCG123397, isoform CRA_b [Mus musculus]
          Length = 841

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 18/80 (22%), Gaps = 7/80 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   + E    +        + A   +     ++  Q+                    
Sbjct: 670 KIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT-NGMSSSGPSRS 728

Query: 56  IKALEVIIEKANAAPIIVAY 75
               E+         II++ 
Sbjct: 729 DTPEELRKMLIEKMKIILSS 748


>gi|313125011|ref|YP_004035275.1| ercc4-like helicase [Halogeometricum borinquense DSM 11551]
 gi|312291376|gb|ADQ65836.1| ERCC4-like helicase [Halogeometricum borinquense DSM 11551]
          Length = 843

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G T  +   T+ E+  G+  +L    +    GL++    ++++FF          Q   R
Sbjct: 411 GMTQKEQQETLDEFRNGEFEVLV-STSVAEEGLDVPEV-DLVLFFEPVPTAIRSIQRKGR 468

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
            G   + +        V  L+A+NT DE      R +       L  LK 
Sbjct: 469 TGRQAEGR--------VIVLMAENTRDEAYFWISRRREKEMKSELRDLKG 510


>gi|47180147|emb|CAG13957.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 110

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)

Query: 52  HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTLD----------KDPC 99
              K + L+ I+ K  A    +++     S +  ++  F                     
Sbjct: 5   SSGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGL 64

Query: 100 TIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143
            ++ +N+      +      + G GLNL    + +V F   W+  +
Sbjct: 65  LLKTFNDPASEYFVFLLSTRAGGLGLNLHS-ADTVVIFDSDWNPHQ 109


>gi|254229273|ref|ZP_04922691.1| type III restriction enzyme, res subunit family [Vibrio sp. Ex25]
 gi|262393165|ref|YP_003285019.1| RNA polymerase associated protein RapA [Vibrio sp. Ex25]
 gi|151938197|gb|EDN57037.1| type III restriction enzyme, res subunit family [Vibrio sp. Ex25]
 gi|262336759|gb|ACY50554.1| RNA polymerase associated protein RapA [Vibrio sp. Ex25]
          Length = 969

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHIPYLKGT 618


>gi|170730594|ref|YP_001776027.1| hypothetical protein Xfasm12_1481 [Xylella fastidiosa M12]
 gi|167965387|gb|ACA12397.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 45

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 171 IAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
           +A  T+DELV+ R  +K  +QDLLL A+K+ 
Sbjct: 1   MAAGTVDELVMARRESKREVQDLLLEAVKRR 31


>gi|154310415|ref|XP_001554539.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
 gi|150851459|gb|EDN26652.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
          Length = 2323

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 106  EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK--R 163
            +    +LF   A      +       ++F + ++  ++         + R  + G     
Sbjct: 2214 DPTARILFLDIADESAAGSNLTVAQHIIFLTPYFAEKQKYNSSMTQAMGRAIRQGQAPGS 2273

Query: 164  AVFVYYLIAQNTIDELV 180
             V V++L+ Q++++  +
Sbjct: 2274 TVTVHHLLVQDSVETDI 2290


>gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M]
 gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M]
          Length = 667

 Score = 36.3 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
            T  K   T+ ++      +L A  +    GL++    ++++F+          Q   R 
Sbjct: 352 MTQKKQIETLDKFRANIYNVLVAS-SVAEEGLDIPKV-DLVIFYEPIPSAIRAIQRKGRT 409

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKET 202
           G              V  L ++NT+DE  L     K      +L  L KE 
Sbjct: 410 GRLNYG--------EVIILYSKNTLDEKALWASIRKEKKMYEILEKLSKEV 452


>gi|324571333|gb|ADY49918.1| Transcription activator BRG1 [Ascaris suum]
          Length = 71

 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 97  DPCTIQEWN-----EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
               +  W        +  +      + G GLNLQ   + ++ F   W+  +  Q  +R 
Sbjct: 6   RTNVVNFWRCTMRLNSEYFIFILSTRAGGLGLNLQT-ADTVIIFDSDWNPHQDMQAQDRA 64

Query: 152 GVTRQ 156
               Q
Sbjct: 65  HRIGQ 69


>gi|290977144|ref|XP_002671298.1| predicted protein [Naegleria gruberi]
 gi|284084866|gb|EFC38554.1| predicted protein [Naegleria gruberi]
          Length = 1033

 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 27/191 (14%)

Query: 15  LQGENIEAFNSASKTVKCLQL---ANGAVYYDEEKHWKEVH------------DEKIKAL 59
              +N    N         QL    N        +   + H              K+  L
Sbjct: 433 FDEKNYSKENKDRLIRAYQQLSNACNHPYLNIASEDEPQRHDPVAYFNTYLQASPKLLVL 492

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
           E ++EK +   +I+   F   +  +     +  ++          N      +       
Sbjct: 493 ERLLEKFSQQNVIIFSSFPCIIEEMLIQQKKNYSIITSENV----NNVTTEKIVLIYHKT 548

Query: 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
                     + ++ F   W+       IER            +   V  L+    ++  
Sbjct: 549 RLIPVKFNHFDYIIMFDSDWNPTLDNSQIERFFTIG-------KDTKVIRLMCAKELERF 601

Query: 180 VLQRLRTKSTI 190
            L+ L  K  +
Sbjct: 602 QLE-LSEKDNL 611


>gi|56461323|ref|YP_156604.1| ATP-dependent helicase HepA [Idiomarina loihiensis L2TR]
 gi|56180333|gb|AAV83055.1| Probable ATP-dependent RNA helicase HepA [Idiomarina loihiensis
           L2TR]
          Length = 886

 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G TL +   +   +   E   P+L         G N Q+  + L+ F L  + +  +
Sbjct: 455 FHEGMTLTERDRSAAFFASEEDGSPILLCS-EIGSEGRNFQFV-HQLILFDLPSNPDLLE 512

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
           Q I R+      + G ++ + +Y    + + +
Sbjct: 513 QRIGRLD-----RIGQQQNIDIYLPYCKGSAE 539


>gi|257790626|ref|YP_003181232.1| SNF2-like protein [Eggerthella lenta DSM 2243]
 gi|257474523|gb|ACV54843.1| SNF2-related protein [Eggerthella lenta DSM 2243]
          Length = 2005

 Score = 36.3 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
             +     ++  +G I +L     + G G N+Q     +      W   + +Q + RI   
Sbjct: 1548 KQKEALYEKVRDGDIRILLGSTTTLGTGTNVQTRLAAIHDLDCPWRPSDLEQRLGRIVR- 1606

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
               Q      V     ++  T D  +   +  K      + 
Sbjct: 1607 ---QGNGFDHVHDLRYVSTGTFDSYLYSIVERKQRFISQVF 1644


>gi|223934446|ref|ZP_03626367.1| SNF2-related protein [bacterium Ellin514]
 gi|223896909|gb|EEF63349.1| SNF2-related protein [bacterium Ellin514]
          Length = 1403

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 46/175 (26%), Gaps = 22/175 (12%)

Query: 32   CLQLANGAVYYDEEKHWKEVHDE---KIKALEVIIEKANAAPI---IVAYHFNSDLARLQ 85
               +      +++     +V      K  A+  ++ +         I++         ++
Sbjct: 1175 LRAICADPAGFEKSPPGMKVKSNMNPKTVAIMELVREIMGQGEQVVIISARVGQTDTLMR 1234

Query: 86   KAFPQGRTLDKDPCTI---------QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136
                 G  + +    +           + +GK  ++             Q    I+    
Sbjct: 1235 LLTEAGVKVSRIDSKVPASQHSYQANLFKKGKTQVMLMGIKCAAAHSFSQCKYEIIGSLE 1294

Query: 137  LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
                  +           R  +   +  V +Y ++   +I+E     + TK    
Sbjct: 1295 YSNGPLD-------QAKGRVDRVNSRPGVTIYVILHARSIEETQFDVVATKQDAA 1342


>gi|126661053|ref|ZP_01732137.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
 gi|126617664|gb|EAZ88449.1| Type III restriction enzyme, res subunit [Cyanothece sp. CCY0110]
          Length = 486

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 48/152 (31%), Gaps = 12/152 (7%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K      D K++ L  +I + +   I++  +     +      L  A      + +
Sbjct: 310 HREAKEIAAGTDGKLRVLTELICEHHQDSILIFTNDNATVYRISEEFLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + EG    L                   +             + ++R+G   +
Sbjct: 370 RHDILSRFREGIYKSLVTSHVLNEGV---DVPDVKVAIILSGTSSAR--EYVQRLGRILR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188
           +     +   +Y ++A++T +E      R K 
Sbjct: 425 KGTELNKLATLYEIVAEDTSEER--TSQRRKE 454


>gi|56417870|emb|CAI19883.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
          Length = 808

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 16/30 (53%)

Query: 166 FVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
            +Y  + + +++E + Q  + K  +  L++
Sbjct: 1   MIYRFVTRASVEERITQVAKRKMMLTHLVV 30


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               +  +    ++++  GK+ +L A   +         G   +  + +  D + +   I
Sbjct: 270 HGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLD--VSGVTHVYNYDIPQDPDSYVHRI 327

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKSTI 190
            R G    +             +  N ++   V+++L  K  +
Sbjct: 328 GRTGRAGHKGVSLT-------FVTPNEMEYLRVIEKLTKKRML 363


>gi|297665071|ref|XP_002810938.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
           protein RAD54-like [Pongo abelii]
          Length = 683

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/200 (9%), Positives = 53/200 (26%), Gaps = 41/200 (20%)

Query: 2   KQYHKFQREL--YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 59
           + Y +F R+     +L+   +   + +S T    +L N      ++   +E         
Sbjct: 422 ELYKRFLRQAKPAEELREGKMSVSSLSSITS-LKKLCNHPALIHDKCVEEEDG---FVGA 477

Query: 60  EVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119
             +     ++  +        L                   +         +L ++    
Sbjct: 478 LDLFPPGYSSKALEPQLSGKMLVLDYIL------------AVTRSRSSDKVVLVSNYTQT 525

Query: 120 GHGLNLQYGGNILVF--FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177
                        ++        +++  +++ER                        TI+
Sbjct: 526 LDLFEKLCRARRYLYVRLDDPXSIKKRAKVVERFNR---------------------TIE 564

Query: 178 ELVLQRLRTKSTIQDLLLNA 197
           E + QR   K  +   +++ 
Sbjct: 565 EKIFQRQSHKKALSSCVVDE 584


>gi|156975910|ref|YP_001446817.1| ATP-dependent helicase HepA [Vibrio harveyi ATCC BAA-1116]
 gi|189039519|sp|A7MSB2|RAPA_VIBHB RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|156527504|gb|ABU72590.1| hypothetical protein VIBHAR_03676 [Vibrio harveyi ATCC BAA-1116]
          Length = 969

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G KR + ++    ++T
Sbjct: 594 QRIGRLD-----RIGQKRDIDIHVPYLKDT 618


>gi|145592350|ref|YP_001154352.1| type III restriction enzyme, res subunit [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145284118|gb|ABP51700.1| type III restriction enzyme, res subunit [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 650

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 2   KQYHKF---QRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 57
           + Y +    + E Y  L     I   N+A+K  + +      V      H   +  + + 
Sbjct: 449 RIYVRMTKEEEEAYSSLRSDNAIMLRNAAAKASRKI-----PVAVRIIAHEVMLGSKVLV 503

Query: 58  ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPA 117
             + I +       +     +++L                    + ++ G   ++     
Sbjct: 504 FTQFIEQAEELHDALRESGISAEL--------ITSEEGGRDAAFRRFSNGLSRVVVTTTV 555

Query: 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGF-KRAVFVYYLIAQNTI 176
                  L  G ++              +      V R  +A   K+A  VY +I +NTI
Sbjct: 556 -------LDEGVDVPDADVAVVVSGTGSRRQMIQRVGRVVRATQGKKAARVYEIITRNTI 608

Query: 177 DE 178
           +E
Sbjct: 609 EE 610


>gi|223997022|ref|XP_002288184.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975292|gb|EED93620.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2271

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 26/150 (17%)

Query: 65   KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124
            +      + +     +  +    +  G   D+D          +  +L  H      GLN
Sbjct: 2134 EGLGCTWLDSTDSVEEKNKKLAWYQYGDVTDEDKR--------RPRVLVLHFEHAA-GLN 2184

Query: 125  LQYGGNILVFF------------SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
            LQ   + L+ F                D     Q I R+    Q     K  V VY +  
Sbjct: 2185 LQAECHNLILFTPLYIGDGGTTGDAVSDASTEMQAIGRVYRPGQ----QKAQVNVYRIEV 2240

Query: 173  QNTIDELVLQRLRTKSTIQDLLLN-ALKKE 201
            +   DE  +     +       +  A+  +
Sbjct: 2241 RGPADEECVDGQLIRRNTDMETIQMAVNAD 2270


>gi|91772921|ref|YP_565613.1| Hef nuclease [Methanococcoides burtonii DSM 6242]
 gi|91711936|gb|ABE51863.1| Hef helicase [Methanococcoides burtonii DSM 6242]
          Length = 769

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              + +  K   +G T  +    I+++  G+  +L A  +    GL++    +++VF+  
Sbjct: 407 VKFVGQSSKFKDKGLTQKQQVEIIEKFKAGEYNVLVAT-SVAEEGLDIPAT-DLVVFYEP 464

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 193
                   Q   R G   + +        V  L+ + T DE        K      
Sbjct: 465 VPSEIRSIQRKGRTGRKHEGR--------VVVLVTKGTRDEAYYWSCAHKEKRMQS 512


>gi|2275597|gb|AAB63915.1| TNF-response element binding protein [Mus musculus]
          Length = 841

 Score = 36.3 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 18/80 (22%), Gaps = 7/80 (8%)

Query: 2   KQYHKFQRELYCDLQ----GENIEA--FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 55
           K Y   + E    +        + A   +     ++  Q+                    
Sbjct: 670 KIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLT-NGMSSSGPSRS 728

Query: 56  IKALEVIIEKANAAPIIVAY 75
               E+         II++ 
Sbjct: 729 DTPEELRKMLIEKMKIILSS 748


>gi|9964506|ref|NP_064974.1| nucleoside triphosphate phosphohydrolase I [Amsacta moorei
           entomopoxvirus 'L']
 gi|1352533|sp|P29814|NTP1_AMEPV RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|9944715|gb|AAG02898.1|AF250284_192 AMV192 [Amsacta moorei entomopoxvirus 'L']
 gi|209637|gb|AAA42384.1| G6L ORF; NPH I homolog of Choristoneura biennis entomopoxvirus
           [unidentified entomopoxvirus]
          Length = 648

 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRAVFV 167
            +     +  G         N ++   + W+  E +Q+I R       +      R V V
Sbjct: 446 KVKVCIFSYAGSEGISFKCINDIIILDMPWNESELKQIIGRSIRLNSHKDLPQEYRYVNV 505

Query: 168 YYLIA----QNTIDELVLQRLRTKSTIQDLLLNALKKETIH 204
           ++LI+    + ++D+ +L  ++ K    +++ + LK  +I 
Sbjct: 506 HFLISYTNNRKSVDKEILDIIKDKQGKINVIFDLLKSSSIE 546


>gi|312884624|ref|ZP_07744327.1| ATP-dependent helicase HepA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367716|gb|EFP95265.1| ATP-dependent helicase HepA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 969

 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +  R          +++D         EG   +L         G N Q+  N LV F L
Sbjct: 528 REGIRATVFHEDMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-SNQLVMFDL 585

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            ++ +  +Q I R+      + G KR + +Y    + T
Sbjct: 586 PFNPDLLEQRIGRLD-----RIGQKRDIDIYVPYLEGT 618


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + +I       +        +      A       +     ++E+  G   +L   
Sbjct: 277 LAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITT 336

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   ++++ + L    E +   I R G   ++             + ++ 
Sbjct: 337 DLLARGIDVQQV--SLVINYDLPTQPENYLHRIGRSGRFGRKGVA-------INFVTKD- 386

Query: 176 IDELVLQRLRT 186
            DE +LQ ++ 
Sbjct: 387 -DERMLQDIQR 396


>gi|262376260|ref|ZP_06069490.1| RNA helicase [Acinetobacter lwoffii SH145]
 gi|262308861|gb|EEY89994.1| RNA helicase [Acinetobacter lwoffii SH145]
          Length = 945

 Score = 36.3 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 49/182 (26%), Gaps = 26/182 (14%)

Query: 2   KQYHKFQRELYCDLQGENIEA-FNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           K   +   E    L G  +EA         +                     D K K + 
Sbjct: 446 KLREQMWPEE-AQLDGSWMEADPRVMWLMERLR------------------TDLKHKKVL 486

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           +I         +          R          L++D        +     +        
Sbjct: 487 LIARSGPVVEALENVLRLHAGIRTAMFHEGMSLLERDQAAAYFAEDSYGAQILLCSEIGS 546

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G N Q+  + L+ F L  + +  +Q I R+    Q        + V YL+   T  E +
Sbjct: 547 EGRNFQF-ASDLILFDLPANPDVLEQRIGRLDRIGQENRIQ---IHVPYLV--GTAQERM 600

Query: 181 LQ 182
            +
Sbjct: 601 FR 602


>gi|167949145|ref|ZP_02536219.1| ATP-dependent helicase HepA [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 555

 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       + +      +L         G N Q+  + LV F L  + +  +
Sbjct: 252 FHEGMSIIERDRAAAWFADPDQGSRILLCS-EIGSEGRNFQF-AHHLVLFDLPLNPDLLE 309

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G ++ V V+
Sbjct: 310 QRIGRLD-----RIGQQQTVRVH 327


>gi|317493311|ref|ZP_07951733.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918704|gb|EFV40041.1| SNF2 family domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 968

 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAY-----------HFNSDLARLQKAFPQGRTLDKDPCT 100
            D +++ L   +       ++V                   A     F +G T+ +    
Sbjct: 487 FDPRVEWLMNFLTSHRDEKVLVICAQAASAVNLEQVLREREAIRAAVFHEGMTIIERDRA 546

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   E    +L         G N Q+  + LV F L ++ +  +Q I R+      +
Sbjct: 547 AAYFASQEEGAQVLLCS-EIGSEGRNFQF-AHHLVMFDLPFNPDLLEQRIGRLD-----R 599

Query: 159 AGFKRAVFVYYLIAQNT 175
            G    + ++    +NT
Sbjct: 600 IGQNHDIKIFVPCLENT 616


>gi|320331250|gb|EFW87197.1| SNF2-related:helicase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 54

 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
             R V V   +A++TID+ + Q L  K  +   L++
Sbjct: 2   QLRMVVVKIPLAEDTIDQQLWQMLMDKRALASDLID 37


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 35  LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV---------AYHFNSDLARLQ 85
           +  GA    ++  ++     K   L  I+ +     I+             + S+     
Sbjct: 343 MVGGACSDVKQTIYEVSKFNKRAKLMEILREEADGTIVFVETKRGADFLASYLSETEFPT 402

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
            +    R   +    ++++  G + +L A   +             ++ + +  +++++ 
Sbjct: 403 TSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI--KNIKHVINYDMPKNIDDYV 460

Query: 146 QMIERIGVTRQR-QAGFKRAVFVYYLIAQNTIDELVLQ 182
             I R G      +A          LIA + I   +L 
Sbjct: 461 HRIGRTGRVGNNGRATTFFDPDQDRLIAADLI--KILD 496


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score = 36.3 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 12/128 (9%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQ 85
           AN  +    +   +   D K+  L   I        I+                      
Sbjct: 321 ANHNILQIVDVCEEYEKDRKLVKLLEEIMGEKENKTIIFCETKRKTDDITRRLRKDGWPA 380

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                 ++  +    ++E+  GK P+L A   +           N +V +      E++ 
Sbjct: 381 MCIHGDKSQPEREWVLKEFRSGKAPILIATDVASRGLDI--PDINFVVNYDYPNSGEDYI 438

Query: 146 QMIERIGV 153
             I R   
Sbjct: 439 HRIGRTAR 446


>gi|254409584|ref|ZP_05023365.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183581|gb|EDX78564.1| Type III restriction enzyme, res subunit family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 505

 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 10/142 (7%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K      + K++ L  ++ K     I+V  +     +      L  A      + +
Sbjct: 310 HRESKEIALGTEGKLRVLADLVAKHYPERILVFTNDNATVYRISQELLIPAITHHTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +Q + EG   +L A                + +  S        ++ ++R+G   +
Sbjct: 370 RHEILQRFREGDYKILVASHVLNEGVD--VPDARVAIILSGTGS---EREYVQRLGRVLR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDE 178
           +     +   +Y +IA+NT +E
Sbjct: 425 KGTDQNKLAILYEVIAENTSEE 446


>gi|325956686|ref|YP_004292098.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
 gi|325333251|gb|ADZ07159.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
          Length = 588

 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 7/133 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II       +     + +       A+  G    +     + +   ++ ++ A  A    
Sbjct: 232 IIYTNTRKKVESLTDYLAKKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMG 291

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIA-QNTI 176
                     ++  S   ++E + Q   R G                +  Y     ++T 
Sbjct: 292 IDK--SNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTA 349

Query: 177 DELVLQRLRTKST 189
           DE   +    K  
Sbjct: 350 DEKYRELQYQKLQ 362


>gi|315038238|ref|YP_004031806.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
 gi|312276371|gb|ADQ59011.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
          Length = 588

 Score = 36.3 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 7/133 (5%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121
           II       +     + +       A+  G    +     + +   ++ ++ A  A    
Sbjct: 232 IIYTNTRKKVESLTDYLAKKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGMG 291

Query: 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTR----QRQAGFKRAVFVYYLIA-QNTI 176
                     ++  S   ++E + Q   R G                +  Y     ++T 
Sbjct: 292 IDK--SNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTA 349

Query: 177 DELVLQRLRTKST 189
           DE   +    K  
Sbjct: 350 DEKYRELQYQKLQ 362


>gi|255084521|ref|XP_002508835.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226524112|gb|ACO70093.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 1459

 Score = 36.3 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 95   DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            DKD        +  + +L     +   GL+L      +       +    QQ++ R    
Sbjct: 957  DKDRALASFRADPDVSVLLL-DRAAAEGLDL-SFVQRVFVAEPLDNASLEQQVVSR---- 1010

Query: 155  RQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
               + G +  V V  L  + T +E +L   
Sbjct: 1011 -AHRMGQRGTVIVEVLAMRGTAEETLLDVQ 1039


>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 508

 Score = 36.3 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 17/170 (10%)

Query: 31  KCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ 90
           K  QL +    Y  E+    +  +    ++VI    +  P +    F             
Sbjct: 341 KLKQLESIFSNYFNEEKKAIIFAQYRDTVDVICNSISNLPGVRPIKFI-------GQGKG 393

Query: 91  GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 150
           G +  +    I+++  G   +L    +    G+++  G +I +F+        + Q   R
Sbjct: 394 GLSQKEQVNIIKDFESGVYNVLV-STSVSEEGMSI-KGVDIAIFYETIPSAIRNIQRRGR 451

Query: 151 IGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKK 200
           +G              ++ LI + T DE      + +      ++  +K+
Sbjct: 452 VGRFSAGS--------IFILITRGTNDEGYYWLSKKREKTMKNIIKNIKE 493


>gi|262275056|ref|ZP_06052867.1| RNA polymerase associated protein RapA [Grimontia hollisae CIP
           101886]
 gi|262221619|gb|EEY72933.1| RNA polymerase associated protein RapA [Grimontia hollisae CIP
           101886]
          Length = 972

 Score = 36.3 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQE-WNEGKI 109
           +   + + + VI  +A  A  +       +  R          L++D         E   
Sbjct: 502 LKSNRQEKVLVICSRAQTALSLEQALREREGIRGTVFHEGMSILERDKAAAYFAQEEAGA 561

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +L         G N Q+  N LV F L  + +  +Q I R+      + G +R + ++ 
Sbjct: 562 QVLICS-EIGSEGRNFQF-ANQLVMFDLPMNPDLLEQRIGRLD-----RIGQRRDIEIHV 614

Query: 170 LIAQNT 175
              + T
Sbjct: 615 PYMEGT 620


>gi|261253960|ref|ZP_05946533.1| RNA polymerase associated protein RapA [Vibrio orientalis CIP
           102891]
 gi|260937351|gb|EEX93340.1| RNA polymerase associated protein RapA [Vibrio orientalis CIP
           102891]
          Length = 969

 Score = 36.3 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLEGT 618


>gi|238917469|ref|YP_002930986.1| hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
 gi|238872829|gb|ACR72539.1| Hypothetical protein EUBELI_01547 [Eubacterium eligens ATCC
          27750]
          Length = 69

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 40 VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF 88
            Y +     E HD K+ ALE IIE +N  P++VAY F  DL+R+++ F
Sbjct: 16 AIYSDTGEIIEFHDRKLDALEDIIESSNGKPVLVAYWFKHDLSRIKERF 64


>gi|330448796|ref|ZP_08312443.1| type III restriction enzyme, res subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492987|dbj|GAA06940.1| type III restriction enzyme, res subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 972

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  +++      ++V                         F +G ++ +    
Sbjct: 490 FDPRVNWLLDMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIERDKA 549

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   E    +L         G N Q+  N LV F L  + +  +Q I R+      +
Sbjct: 550 AAYFAQEEDGAQVLLCS-EIGSEGRNFQF-ANQLVMFDLPSNPDLLEQRIGRLD-----R 602

Query: 159 AGFKRAVFVYYLIAQNT 175
            G KR + ++    + T
Sbjct: 603 IGQKREIEIHVPYLEGT 619


>gi|329117951|ref|ZP_08246664.1| toprim domain protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465839|gb|EGF12111.1| toprim domain protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 791

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 37/234 (15%)

Query: 3   QYHKFQRELYCDLQGENIEAFNSAS--KTVKCLQL--ANGA------------VYYDEEK 46
            Y K +R L   L+    +  NS +       L                    ++Y   +
Sbjct: 538 VYQKMERVLKNYLKEALSKRDNSLTGVVMNALLAWPDCCHQEETVYWKRKRETLFYAPAQ 597

Query: 47  HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHF----------NSDLARLQKA---FPQG 91
           +  +    K   L  +++         +V   +             L R           
Sbjct: 598 YGPQDVSPKEADLLEVVQGSLKRGRRCLVYTVYSDTRDTTGRLKQLLQRHGIKAAVMKAT 657

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 151
              D+    + +  E    ++  +P     GL+L      + F    +++          
Sbjct: 658 VKADEREDWVVDRLEEGCQVVICNPELVKTGLDLLAF-PTIYFMQTGYNVYTLM-----Q 711

Query: 152 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 205
              R  + G    V VY+   +++   + L+ +  K  +       +    + +
Sbjct: 712 AARRSWRIGQTEDVEVYFAGYKDSAQHICLELMGKKIAVTQSTSGDMPDSGLDI 765


>gi|126723774|ref|NP_001075845.1| helicase-like transcription factor beta [Oryctolagus cuniculus]
 gi|1655932|gb|AAC48693.1| RUSH-1beta [Oryctolagus cuniculus]
          Length = 836

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 6/43 (13%)

Query: 2   KQYHKFQRELYC----DLQGENIEA--FNSASKTVKCLQLANG 38
           K Y   + E             + A   +     ++  Q+   
Sbjct: 673 KIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCH 715


>gi|260900303|ref|ZP_05908698.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus AQ4037]
 gi|308107586|gb|EFO45126.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus AQ4037]
 gi|328471408|gb|EGF42303.1| ATP-dependent helicase HepA [Vibrio parahaemolyticus 10329]
          Length = 969

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|28899456|ref|NP_799061.1| ATP-dependent helicase HepA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839600|ref|ZP_01992267.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|260363377|ref|ZP_05776229.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus K5030]
 gi|260879311|ref|ZP_05891666.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AN-5034]
 gi|260895730|ref|ZP_05904226.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio parahaemolyticus Peru-466]
 gi|41017713|sp|Q87LD0|RAPA_VIBPA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|28807692|dbj|BAC60945.1| RNA polymerase-associated protein HepA [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746871|gb|EDM57859.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AQ3810]
 gi|308087403|gb|EFO37098.1| RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA)
           [Vibrio parahaemolyticus Peru-466]
 gi|308093093|gb|EFO42788.1| RNA polymerase-associated protein RapA [Vibrio parahaemolyticus
           AN-5034]
 gi|308111158|gb|EFO48698.1| type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus K5030]
          Length = 969

 Score = 35.9 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|308068476|ref|YP_003870081.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score = 35.9 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               + ++    ++++ +G I +L A   +         G   +V F L  D E +   I
Sbjct: 271 HGDLSQNQRDAVMRKFRDGSIDVLVATDVAARGLD--VSGVTHVVNFDLPQDPESYVHRI 328

Query: 149 ERIGVTR----QRQAGFKRAVFVYYLIAQNTIDELV--------LQRLRTKST-IQDLLL 195
            R G              R +   + I + T    +         + L  K   I + LL
Sbjct: 329 GRTGRAGKEGEAWSFVTPREIDHLHFIERVTR-HRIPRKPLPTLAEALEGKQRIIAERLL 387

Query: 196 NALK 199
            A++
Sbjct: 388 EAVE 391


>gi|114564661|ref|YP_752175.1| ATP-dependent helicase HepA [Shewanella frigidimarina NCIMB 400]
 gi|122298617|sp|Q07XC8|RAPA_SHEFN RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|114335954|gb|ABI73336.1| SNF2-related protein [Shewanella frigidimarina NCIMB 400]
          Length = 968

 Score = 35.9 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I  +A  A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEDMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + L+ F L  + +  +Q I R+      + G +  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLILFDLPLNPDLLEQRIGRLD-----RIGQQNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               ++T  E +++
Sbjct: 611 LPYLRDTAQERLMR 624


>gi|7770712|gb|AAF69763.1| similar to RAD25 [Synechocystis sp. PCC 9413]
          Length = 449

 Score = 35.9 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY-----HFNSDLARLQKAFPQGRTLDK 96
           + + +    + D K++ L  ++ +      I+        +    A L  A      + +
Sbjct: 260 HRQAREIALITDGKLRVLINLLGQHYPESTIIFTADNATVYKISKALLIPAITHQTPVKE 319

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  +  G    L A                I +  S        ++ I+R+G   +
Sbjct: 320 RHEILTRFKAGDYKTLIASHVLNEGVD--VPEARIAIVLSGTGS---RREYIQRLGRVLR 374

Query: 157 RQAGFKRAVFVYYLIAQNTIDE 178
           +    ++   +Y +IA++T++E
Sbjct: 375 KGQNDQKQAILYEVIAEDTVEE 396


>gi|269968016|ref|ZP_06182054.1| RNA polymerase-associated protein rapA [Vibrio alginolyticus 40B]
 gi|269827373|gb|EEZ81669.1| RNA polymerase-associated protein rapA [Vibrio alginolyticus 40B]
          Length = 969

 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218]
          Length = 435

 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 15/153 (9%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------- 88
           G    +E  +    H  K+  L+ ++E+      IV  +      ++             
Sbjct: 228 GHRIKEELFYPSNEH--KMALLQTLLEEEWPDRAIVFANTKHRCEQIWGHLAADGHRVGL 285

Query: 89  -PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   K    ++++ +G++ +L A   +             +  + L  D E++   
Sbjct: 286 LNGDVPQKKRERILEQFTKGELDVLVATDVAARGLHI--PQVTHVFNYDLPDDCEDYVHR 343

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
           I R G           A   Y +     I+E +
Sbjct: 344 IGRTGRAGASGHSISFACEEYAINLPG-IEEYI 375


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +    ++++  G + +L A                +++ + +  D E++   
Sbjct: 274 MHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDI--DNIRVVINYDIPHDPEDYVHR 331

Query: 148 IERIGV 153
           I R   
Sbjct: 332 IGRTAR 337


>gi|320103927|ref|YP_004179518.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
 gi|319751209|gb|ADV62969.1| type III restriction protein res subunit [Isosphaera pallida ATCC
           43644]
          Length = 514

 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            KI+ L  ++++ N   +++  H     +      L           +    + ++ +G 
Sbjct: 374 AKIQLLRRLLDRHNGDRVLIFTHDNATVYQIAREFLVPVITHQTKTKERHEVLTKFRQGV 433

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
            P+L                 N+ +  S    + EH Q + RI      +    +   +Y
Sbjct: 434 YPVLATSRVLNEGVN--VPEANVGIVLSGTGTVREHVQRLGRI-----LRKAADKEAILY 486

Query: 169 YLIAQNTIDE 178
            ++ + T++E
Sbjct: 487 EVVTRGTVEE 496


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score = 35.9 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 14/127 (11%)

Query: 36  ANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV---------AYHFNSDLARLQK 86
           A   V     +  K     K+     I+ +     I+             F S+      
Sbjct: 309 ACSDVQQTIYEVNKFAKRSKL---MEILREQADGTIVFVETKRGADFLASFLSETEFPTT 365

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           +    R   +    ++++  G + ++ A   +           N +V F +  +++++  
Sbjct: 366 SIHGDRLQSQREQALRDFKNGSMKVIIATSVAARGLDI--KNINHVVNFDMPNNIDDYVH 423

Query: 147 MIERIGV 153
            I R G 
Sbjct: 424 RIGRTGR 430


>gi|148977842|ref|ZP_01814397.1| ATP-dependent helicase HepA [Vibrionales bacterium SWAT-3]
 gi|145962911|gb|EDK28182.1| ATP-dependent helicase HepA [Vibrionales bacterium SWAT-3]
          Length = 969

 Score = 35.9 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G +R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQQRDIDIHVPYLKGT 618


>gi|91225597|ref|ZP_01260671.1| ATP-dependent helicase HepA [Vibrio alginolyticus 12G01]
 gi|91189717|gb|EAS75991.1| ATP-dependent helicase HepA [Vibrio alginolyticus 12G01]
          Length = 969

 Score = 35.9 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLKGT 618


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   +    ++++  G + +L A                +++ + +  D E++   
Sbjct: 274 MHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDI--DNIRVVINYDIPHDPEDYVHR 331

Query: 148 IERIGV 153
           I R   
Sbjct: 332 IGRTAR 337


>gi|224132518|ref|XP_002328309.1| chromatin remodeling complex subunit [Populus trichocarpa]
 gi|222837824|gb|EEE76189.1| chromatin remodeling complex subunit [Populus trichocarpa]
          Length = 1996

 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 52/198 (26%), Gaps = 42/198 (21%)

Query: 33  LQLANGAVYYDEEKHWKEVHDEKIKALEVI-IEKANAAPIIVAYHFN------------- 78
            +  +     D         D K   +  I I+ +    ++ A  FN             
Sbjct: 481 RKCCDHPYIMDPSLQISLTKDSKEADILDIGIKASGKLQLLDAMLFNIKERGLRVLVLFQ 540

Query: 79  --------------SDLARLQKAFPQ------GRTLDKDPCTIQEWNE--GKIPLLFAHP 116
                          D  R +                +    ++ +N       +     
Sbjct: 541 SSGGSGKDNVGDILDDFIRQRFGKGCYERVDGHVLPSRKQAALKNFNNLQEGRFVFLLET 600

Query: 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176
            +C   + L     +++F S W          +   + +         + ++ L +  T+
Sbjct: 601 RACSPSIKLSSVDTVIIFASDWK------PNTDIRNLQKITLYSESEQINIFRLYSSCTV 654

Query: 177 DELVLQRLRTKSTIQDLL 194
           +E VL   R   T+   L
Sbjct: 655 EEKVLIVARQDKTLDRNL 672


>gi|33152776|ref|NP_874129.1| ATP-dependent helicase HepA [Haemophilus ducreyi 35000HP]
 gi|41017667|sp|Q7VKV0|RAPA_HAEDU RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|33149000|gb|AAP96518.1| RNA polymerase associated protein [Haemophilus ducreyi 35000HP]
          Length = 973

 Score = 35.9 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 60/198 (30%), Gaps = 36/198 (18%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTV-----------KCLQLANGAVYYDEEKHWKE 50
           + YH+       ++  +   A N  +              +  Q  N         +  E
Sbjct: 439 RVYHQI----TLEMPDQYANALNVRAMMGSMEPQDHFYPERLYQCLNSQA---PMGNRWE 491

Query: 51  VHDEKIKALEVIIEKANAAPIIVAYHFNS------------DLARLQKAFPQGRTLDKDP 98
             D +I  L   ++      +++                  +  R          +++D 
Sbjct: 492 DFDPRIAWLMTFLKNHRDEKVLIICKQAEIAITLAQVLREREAIRTAVFHEHMTIVERDR 551

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
                    +   +    +    G N Q+  N++  F+L  + +  +Q I R+      +
Sbjct: 552 AAAYFAQIEEGAQVLISSSIGSEGRNFQFARNLV-LFNLPDNPDLLEQSIGRLD-----R 605

Query: 159 AGFKRAVFVYYLIAQNTI 176
            G K  + +Y    +N++
Sbjct: 606 IGQKNDIQIYVPCFKNSM 623


>gi|268575342|ref|XP_002642650.1| Hypothetical protein CBG00032 [Caenorhabditis briggsae]
 gi|187039385|emb|CAP21567.1| hypothetical protein CBG_00032 [Caenorhabditis briggsae AF16]
          Length = 640

 Score = 35.9 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 56/177 (31%), Gaps = 24/177 (13%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDP- 98
             +     ++++   K     + + + +++  +            +  +   +   K   
Sbjct: 429 SKFHPLAVYQQIQRNKFNRTLIFVNEVSSSNRLAHVLKELSQGEFEVDYFTAQLFGKRRY 488

Query: 99  CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
             ++++N+    +L         G +L     ++ +        + +  + R    R  +
Sbjct: 489 KMLEKFNKNPNRVLICSDVLAR-GTDLNRVDCVINY----NLPADDKLFVHR--AGRTGR 541

Query: 159 AGFKRAVF------VYYLIAQ---------NTIDELVLQRLRTK-STIQDLLLNALK 199
           AG +  V          L  +         +T++E + + L  K        + +LK
Sbjct: 542 AGQEGYVISVGDKETKRLFVKMLKVTNLWGDTVEEQMDEYLFEKDLERYTKAIESLK 598


>gi|322798229|gb|EFZ20021.1| hypothetical protein SINV_12458 [Solenopsis invicta]
          Length = 283

 Score = 35.9 bits (81), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 81  LARLQKAFPQGRTLDKDPCTIQEWNEG---KIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
           L           + +        +N+    +  L      + G G+NL    N ++ F  
Sbjct: 209 LGLDYFRLDGSTSPENRNIWCNIFNKPTNTRARLFLISTRAGGLGINLTA-ANRVIIFDA 267

Query: 138 WWDLEEHQQMIERIGV 153
            W+     Q I RI  
Sbjct: 268 SWNPSHDVQSIFRIYR 283


>gi|254571881|ref|XP_002493050.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|238032848|emb|CAY70871.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|328352938|emb|CCA39336.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 544

 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 45/149 (30%), Gaps = 18/149 (12%)

Query: 8   QRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 67
           +      ++ + +   +   K V   Q+    V   E K    +  + I   + +  +  
Sbjct: 327 KEAANTQIKQKVVYTGSEEGKLVALRQM----VQNSEFKPPVLIFLQSITRAKALFHELI 382

Query: 68  AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 127
              + V    +             RT  +    ++ + +G I +L               
Sbjct: 383 YDKMNVDVIHSE------------RTQIQRDRVVERFQKGDIWVLICTEVIGRGIDF--K 428

Query: 128 GGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
           G N+++ + +    E +   I R G    
Sbjct: 429 GINLVINYDVPTSAEAYVHRIGRTGRAGH 457


>gi|159041395|ref|YP_001540647.1| helicase domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920230|gb|ABW01657.1| helicase domain protein [Caldivirga maquilingensis IC-167]
          Length = 886

 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 37/212 (17%)

Query: 1   MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           +K+Y     +    L+     A  + +K    +QL               V  + I+  E
Sbjct: 684 VKEYRSIGEDNAIMLRN---TAAQAKAKIPVTVQLT---KLEYSLGSKVIVFTQYIEQAE 737

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
            I E+      +      S                      + +  G + +L        
Sbjct: 738 EIYEELKKELGVKVALITS-------------KTSNRDDIFERFRLGNVKVLVTTTVL-- 782

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-- 178
                    ++ V  S      +  Q + R+      Q   K    VY +IA+NTI+E  
Sbjct: 783 DEGIDVPDADVAVVVSGTGSPRQMIQRVGRVVR----QTEGKVEARVYEIIARNTIEEAL 838

Query: 179 --------LVLQRLRTK--STIQDLLLNALKK 200
                    V ++   K       LLLN +K 
Sbjct: 839 SNERHPDDEVYEKECRKYDEKDLSLLLNRVKA 870


>gi|128589|sp|P24486|NTP1_CBEPV RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|323272|gb|AAA42886.1| nucleoside triphosphate phosphohydrolase I [Choristoneura biennis
           entomopoxvirus 'L']
          Length = 648

 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQA--GFKRAVFVYYLIA----QNTIDELVLQR 183
           N ++   + W+  E +Q+I R       +      R V V+++I+    + ++D+ +L  
Sbjct: 467 NDIIILDMPWNESELKQIIGRSIRLNSHEYLPINYRYVNVHFIISYSNNRKSVDKEMLDI 526

Query: 184 LRTKSTIQDLLLNALKKETIH 204
           ++ K    +++ + LK  +I 
Sbjct: 527 IKNKQGKINVVFDLLKASSIE 547


>gi|26339542|dbj|BAC33442.1| unnamed protein product [Mus musculus]
          Length = 388

 Score = 35.9 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/98 (9%), Positives = 25/98 (25%), Gaps = 9/98 (9%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY-------DEEKHWKEVHDE 54
           K Y     +     + E  +     +   +  +  +    +        E          
Sbjct: 282 KYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASG 341

Query: 55  KIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ 90
           K+  L+ ++    +    +++       L  LQ     
Sbjct: 342 KLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDY 379


>gi|157961097|ref|YP_001501131.1| helicase domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|157846097|gb|ABV86596.1| helicase domain protein [Shewanella pealeana ATCC 700345]
          Length = 1081

 Score = 35.9 bits (81), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 30/136 (22%), Gaps = 13/136 (9%)

Query: 37  NGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDK 96
                         +   K++    I   +             D             L  
Sbjct: 830 CH--LLATSGSDVHIATSKLEHAMGIRSSSEQVHFWEDRTKAKDKCSSSMRCHFAVPLGN 887

Query: 97  DP-----------CTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
                             +N    P + +  +    GL+  +    +V ++L  +  + +
Sbjct: 888 QKLNDDSGLKRVVSVRDAFNSPFRPFVLSSTSIGQEGLDFHWYCRRVVHWNLPNNPIDIE 947

Query: 146 QMIERIGVTRQRQAGF 161
           Q   R+   +      
Sbjct: 948 QREGRVNRYKSLVVRQ 963


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score = 35.5 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 14/183 (7%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN 78
            I+A +S  +  K  Q         E K     H    +A   I+       +       
Sbjct: 208 EIDAKSSLRERKKITQWY-HRADTAEHKLDLLKHIITKEAERSIVFLKTRERLGDLRALL 266

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
                           D+    I  + +G + +L A   +   G++L    + ++ + + 
Sbjct: 267 ESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAAR-GIDLPDVSH-VINYDMP 324

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT--KSTIQDLLLN 196
              + +   I R     ++            LI  +  D+L+++R+    K  I++  + 
Sbjct: 325 RTADVYLHRIGRTARAGKKGNAVS-------LIEAH--DQLMIERVARYTKEAIKERFVE 375

Query: 197 ALK 199
            ++
Sbjct: 376 GMR 378


>gi|266626018|ref|ZP_06118953.1| putative Helicase [Clostridium hathewayi DSM 13479]
 gi|288862081|gb|EFC94379.1| putative Helicase [Clostridium hathewayi DSM 13479]
          Length = 233

 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RQ      V VY  + + T D  + Q +  K      ++ +
Sbjct: 13  RQGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMTS 53


>gi|268325930|emb|CBH39518.1| putative ATP-dependent RNA helicase [uncultured archaeon]
          Length = 780

 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
              + +  KA  +G    +    I ++  G   +L A  +    GL++    ++++F+  
Sbjct: 404 VKFIGQATKAEDKGLKQKEQVEIITKFKAGDYNVLVAT-SVAEEGLDIPAT-DLVLFYEP 461

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
                   Q   R           K+   V  LIA+ T DE      R+K       ++ 
Sbjct: 462 IPSAIRSIQRKGRTAR--------KKVGKVIVLIAKGTKDEAYYWLSRSKEREMRKRISE 513

Query: 198 LK 199
           ++
Sbjct: 514 MR 515


>gi|226356717|ref|YP_002786457.1| bifunctional helicase type III restriction enzyme/ DEAD/DEAH box
           helicase [Deinococcus deserti VCD115]
 gi|226318707|gb|ACO46703.1| putative bifunctional protein: Helicase Type III restriction
           enzyme/ DEAD/DEAH box helicase [Deinococcus deserti
           VCD115]
          Length = 467

 Score = 35.5 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 54  EKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
            K++ LE I+    A   ++        +      L  A      + +    ++++  G 
Sbjct: 317 GKLRVLEEILVNHPAERTLIFTDDNATVYRISREFLIPAITHQTPVKERHGLLEKFRSGA 376

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
             +L         G+++      +V            +      + R  +    +   +Y
Sbjct: 377 YRILVTS-RVLNEGVDVPEASVAVVL------SGTATEREHIQRLGRILRKAEGKTAVLY 429

Query: 169 YLIAQNTIDELVLQ 182
            +I + T +E V Q
Sbjct: 430 EVITEGTSEERVSQ 443


>gi|297276138|ref|XP_002808217.1| PREDICTED: LOW QUALITY PROTEIN: transcription activator BRG1-like
            [Macaca mulatta]
          Length = 1724

 Score = 35.5 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 53   DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCT 100
              K + L+ I+ K  A    +++     S +  ++  F                +     
Sbjct: 1151 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1210

Query: 101  IQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
            ++ +NE      +      + G GLNLQ   + ++ F   W+  +   +I 
Sbjct: 1211 LKTFNEPGSEYFIFLLSTRAGGLGLNLQS-ADTVIIFDSDWNPHQPFPLIG 1260


>gi|260827935|ref|XP_002608919.1| hypothetical protein BRAFLDRAFT_85516 [Branchiostoma floridae]
 gi|229294273|gb|EEN64929.1| hypothetical protein BRAFLDRAFT_85516 [Branchiostoma floridae]
          Length = 1178

 Score = 35.5 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 2/25 (8%), Positives = 8/25 (32%)

Query: 20  IEAFNSASKTVKCLQLANGAVYYDE 44
           ++  +   + ++  Q         E
Sbjct: 790 VKVSHILVQLLRLRQCCCHLSLMKE 814


>gi|24372168|ref|NP_716210.1| ATP-dependent helicase HepA [Shewanella oneidensis MR-1]
 gi|41017732|sp|Q8EJ93|RAPA_SHEON RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|24346069|gb|AAN53655.1|AE015504_5 RNA polymerase-associated protein HepA [Shewanella oneidensis MR-1]
          Length = 968

 Score = 35.5 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I   A+ A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVLQ 182
               Q+T  E +LQ
Sbjct: 611 LPYLQDTAQERLLQ 624


>gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
 gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II)
           [butyrate-producing bacterium SSC/2]
          Length = 509

 Score = 35.5 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 9/151 (5%)

Query: 41  YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCT 100
                +      + +   +  I+EK+    +I+ Y+F+ +L  L                
Sbjct: 252 LCYVLRRVVNTDERRAMTVLEILEKSP--RVIIFYNFDYELDILMNIAYGEDVEVAQWNG 309

Query: 101 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
            +          +      +   G N     + ++F+S  +  +  +Q   RI       
Sbjct: 310 HKHQPVPDTKSWVYLVQYTAGCEGWN-CIKTDTIIFYSQNYSYKVMEQASGRIDRLNTP- 367

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189
               + ++ Y+L +++ ID  + + L  K  
Sbjct: 368 ---YKDLYYYHLKSRSGIDLAISKALTKKKK 395


>gi|163802915|ref|ZP_02196803.1| ATP-dependent helicase HepA [Vibrio sp. AND4]
 gi|159173322|gb|EDP58148.1| ATP-dependent helicase HepA [Vibrio sp. AND4]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G T+ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMTILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G +R + ++    ++T
Sbjct: 594 QRIGRLD-----RIGQQRDIDIHVPYLKDT 618


>gi|225684899|gb|EEH23183.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 585

 Score = 35.5 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              KR   V  L+ ++++++LV Q    K    + ++  +K  
Sbjct: 302 LTQKRHFVVINLVRKHSVEQLVKQLQSRKIISSEQVIREMKNR 344


>gi|14590364|ref|NP_142430.1| hypothetical protein PH0450 [Pyrococcus horikoshii OT3]
 gi|3256853|dbj|BAA29536.1| 449aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 449

 Score = 35.5 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 24/172 (13%)

Query: 17  GENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH 76
           G + +AF +     K  ++A G                KI+ L  I+E+     II+   
Sbjct: 287 GMDNKAFKALRALEKSRKIALG-------------SKGKIEELRKILERHRGEKIIIFTR 333

Query: 77  FNSDLARLQKAF-----PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
           +N  +  + + F            +    ++++ +G    + +               ++
Sbjct: 334 YNELVYEISRKFLIPAITHKTDKKERSEILKKFRKGIYKAVVSSQVL--DEGIDVPDASV 391

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183
            V  S      E  Q + RI  +       K    +Y L+   T +  +  R
Sbjct: 392 GVIISGTGSPRELIQRLGRILRSA----PGKEKAILYELVTPGTAEVRIASR 439


>gi|284162865|ref|YP_003401488.1| type III restriction protein res subunit [Archaeoglobus profundus
           DSM 5631]
 gi|284012862|gb|ADB58815.1| type III restriction protein res subunit [Archaeoglobus profundus
           DSM 5631]
          Length = 450

 Score = 35.5 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 11/143 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----PQGRTLDKDPCTIQEWNE 106
              K+K L  ++EK     II+   +N  +  + + F         +  +    +  +  
Sbjct: 313 SKNKLKVLRDLLEKHKGDKIIIFTRYNDLVYTISRVFLIPAITHKTSDKERKLILDGFRR 372

Query: 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVF 166
           GK   +                 N+ +  S      E  Q + RI    + +        
Sbjct: 373 GKFKAIVTSQVL--DEGIDVPDANVGIIVSGTGSSREFIQRLGRILRPAEGKDLA----V 426

Query: 167 VYYLIAQNTIDELVLQRLRTKST 189
           +Y L++++T +  V +R   K  
Sbjct: 427 LYELVSKDTGEVRVAKRRAKKIK 449


>gi|86139555|ref|ZP_01058123.1| DEAD/DEAH box helicase:Helicase, C-terminal [Roseobacter sp.
           MED193]
 gi|85823738|gb|EAQ43945.1| DEAD/DEAH box helicase:Helicase, C-terminal [Roseobacter sp.
           MED193]
          Length = 1061

 Score = 35.5 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
           RL +   +   + +       +N    P + A  +    GL+  Y  + LV ++L  +  
Sbjct: 868 RLLQKSQEDGQMQRTDNVRGAFNSPFRPFVLATTSVGQEGLDFHYYCHRLVHWNLPTNPV 927

Query: 143 EHQQMIERIGVTRQR 157
           + +Q   R+   +  
Sbjct: 928 DLEQREGRVHRFKNH 942


>gi|295394515|ref|ZP_06804738.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972694|gb|EFG48546.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 542

 Score = 35.5 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 54  EKIKALEVIIEKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQEWNEGK 108
            K++A + I+++   A ++V   +   L  L                +     +++  G+
Sbjct: 393 AKVRATKHIVKEHPDAQLLVIGQYLDQLEELGEALNAPVLTGKTPESERERLYEDFRNGE 452

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
           + +L          ++L      +     +   +E  Q + RI   ++           Y
Sbjct: 453 VRVLVVS-KVANFSVDLPQASVAIQVSGSFGSRQEEAQRLGRILRPKENAL----PATFY 507

Query: 169 YLIAQNTIDE 178
            ++  NT+DE
Sbjct: 508 TIVTANTVDE 517


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score = 35.5 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
           S      +        ++    ++ +  G I +L A   +         G + +  F L 
Sbjct: 261 SIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLDI--SGVSHVFNFDLP 318

Query: 139 WDLEEHQQMIERIGVTRQRQAGFK 162
            D E +   I R G   Q+   F 
Sbjct: 319 QDPESYVHRIGRTGRAGQKGISFT 342


>gi|260949759|ref|XP_002619176.1| hypothetical protein CLUG_00335 [Clavispora lusitaniae ATCC 42720]
 gi|238846748|gb|EEQ36212.1| hypothetical protein CLUG_00335 [Clavispora lusitaniae ATCC 42720]
          Length = 964

 Score = 35.5 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 7/82 (8%)

Query: 2   KQYHKFQRELYC-DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
           + Y+ F+  L   +L  +        +  ++  Q+              +   E++ A E
Sbjct: 804 RAYNSFKEGLKSGELLKK---YTQILTHILRLRQVCCHPDLVAASSELDDSWKEELAAFE 860

Query: 61  VIIEKANAAPIIVAYHFNSDLA 82
             I+K               L 
Sbjct: 861 EPIKKE---KFWSETMMKEKLY 879


>gi|218437090|ref|YP_002375419.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
 gi|218169818|gb|ACK68551.1| type III restriction protein res subunit [Cyanothece sp. PCC 7424]
          Length = 499

 Score = 35.5 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K      D K++ L  +I +     I++  +     +      L  A      + +
Sbjct: 310 HREAKEIASGTDGKLRVLTELISQHYPEAILIFTNDNATVYRISQEFLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               ++ + EG   +L                  I +  S        ++ ++R+G   +
Sbjct: 370 RHDILKRFREGDYKILVTSHVLNEGVD--VPDARIAIILSGTGSA---REYVQRLGRVLR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL 179
           +     +   +Y +I ++T +E 
Sbjct: 425 KGKTPDKLAILYEVITEDTSEER 447


>gi|327484994|gb|AEA79401.1| RNA polymerase associated protein RapA [Vibrio cholerae LMA3894-4]
          Length = 972

 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 539 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 596

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 597 QRIGRLD-----RIGQKRDIDVY 614


>gi|325478692|gb|EGC81803.1| hypothetical protein HMPREF9290_0083 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 66

 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 48  WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 107
              +HD K+ ALE +IE AN  P+++AY + S L R++          K     +EWN G
Sbjct: 1   MIRIHDIKLDALEDLIEGANGKPVLIAYWYKSYLRRIK--DKFDVREFKTNEDFKEWNRG 58

Query: 108 KIPLLFAH 115
            IP+   H
Sbjct: 59  NIPVAITH 66


>gi|291551025|emb|CBL27287.1| Replication initiator protein A (RepA) N-terminus [Ruminococcus
           torques L2-14]
          Length = 496

 Score = 35.5 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196
              +L +  Q   RI      Q      V VY  + + T D  + Q +  K      ++ 
Sbjct: 163 DCKNLGDLAQRKGRIER----QGNQNPLVHVYRYVTEGTFDAYLWQTVENKQKFISQIMT 218

Query: 197 A 197
           +
Sbjct: 219 S 219


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 23/158 (14%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSD----------LARLQKAFPQGRT 93
           E+ +++  +  K++ +  +++       IV  +                          +
Sbjct: 219 EQVYYEVRNRSKVEVMCRLLDMEPTQRGIVFCNTKQMVEDVCEALNARGYTADRIHGDIS 278

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
                  I+ + +  I +L A   +            ++  + L +D E+    + RIG 
Sbjct: 279 QGIREKVIRRFRDNAIEILVATDVAARGLDI--DDIELVFNYDLPYDPED---YVHRIGR 333

Query: 154 TRQRQAGFKRAVFVY-----YLIAQNTIDELVLQRLRT 186
           T +     K   FVY      L A   I+  + Q +R 
Sbjct: 334 TGRAGRSGKSITFVYGRDIRRLEA---IERYIRQSIRR 368


>gi|323492962|ref|ZP_08098100.1| ATP-dependent helicase HepA [Vibrio brasiliensis LMG 20546]
 gi|323312793|gb|EGA65919.1| ATP-dependent helicase HepA [Vibrio brasiliensis LMG 20546]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    Q T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLQGT 618


>gi|262401798|ref|ZP_06078363.1| RNA polymerase associated protein RapA [Vibrio sp. RC586]
 gi|262351770|gb|EEZ00901.1| RNA polymerase associated protein RapA [Vibrio sp. RC586]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|262191022|ref|ZP_06049231.1| RNA polymerase associated protein RapA [Vibrio cholerae CT 5369-93]
 gi|262033085|gb|EEY51614.1| RNA polymerase associated protein RapA [Vibrio cholerae CT 5369-93]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|262170550|ref|ZP_06038228.1| RNA polymerase associated protein RapA [Vibrio mimicus MB-451]
 gi|261891626|gb|EEY37612.1| RNA polymerase associated protein RapA [Vibrio mimicus MB-451]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|254291424|ref|ZP_04962216.1| RNA polymerase-associated protein HepA [Vibrio cholerae AM-19226]
 gi|150422614|gb|EDN14569.1| RNA polymerase-associated protein HepA [Vibrio cholerae AM-19226]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|153829788|ref|ZP_01982455.1| RNA polymerase-associated protein HepA [Vibrio cholerae 623-39]
 gi|229521571|ref|ZP_04410989.1| RNA polymerase associated protein RapA [Vibrio cholerae TM
           11079-80]
 gi|148874706|gb|EDL72841.1| RNA polymerase-associated protein HepA [Vibrio cholerae 623-39]
 gi|229341165|gb|EEO06169.1| RNA polymerase associated protein RapA [Vibrio cholerae TM
           11079-80]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|153215709|ref|ZP_01950090.1| RNA polymerase-associated protein HepA [Vibrio cholerae 1587]
 gi|124114627|gb|EAY33447.1| RNA polymerase-associated protein HepA [Vibrio cholerae 1587]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|121730289|ref|ZP_01682662.1| RNA polymerase-associated protein HepA [Vibrio cholerae V52]
 gi|147673548|ref|YP_001218004.1| ATP-dependent helicase HepA [Vibrio cholerae O395]
 gi|262167536|ref|ZP_06035241.1| RNA polymerase associated protein RapA [Vibrio cholerae RC27]
 gi|189039518|sp|A5F5C5|RAPA_VIBC3 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|121627960|gb|EAX60524.1| RNA polymerase-associated protein HepA [Vibrio cholerae V52]
 gi|146315431|gb|ABQ19970.1| RNA polymerase-associated protein HepA [Vibrio cholerae O395]
 gi|227014396|gb|ACP10606.1| RNA polymerase-associated protein HepA [Vibrio cholerae O395]
 gi|262023989|gb|EEY42685.1| RNA polymerase associated protein RapA [Vibrio cholerae RC27]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|118379843|ref|XP_001023087.1| adenosylhomocysteinase family protein [Tetrahymena thermophila]
 gi|89304854|gb|EAS02842.1| adenosylhomocysteinase family protein [Tetrahymena thermophila
           SB210]
          Length = 478

 Score = 35.5 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 13/190 (6%)

Query: 19  NIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK-IKALEVIIEKANAAPIIVAYHF 77
            I+   +    +K LQ+        E   +      K I   E + +  N A +    HF
Sbjct: 286 EIDPICALQACMKGLQVVRLESVLKEADIFITTTGNKNIIMAEHMAQMKNNAIVGNIGHF 345

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFF 135
           ++++              +    ++ +   +G   ++ A          L   G      
Sbjct: 346 DNEIDYHGLCNWPEIKKVEIKPQVERFQFPDGHGVIMLAQ-------GRLLNLGCATGHP 398

Query: 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 195
           S         Q +         +   K    VY L     +DE V +        +  +L
Sbjct: 399 SFVMSNSFTNQTLA-QIELWTNRNTGKYKNEVYKL--PKELDEKVARLHLKSLGAELTVL 455

Query: 196 NALKKETIHV 205
           +  + + IHV
Sbjct: 456 SKEQADYIHV 465


>gi|229524489|ref|ZP_04413894.1| RNA polymerase associated protein RapA [Vibrio cholerae bv.
           albensis VL426]
 gi|229338070|gb|EEO03087.1| RNA polymerase associated protein RapA [Vibrio cholerae bv.
           albensis VL426]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|153801101|ref|ZP_01955687.1| RNA polymerase-associated protein HepA [Vibrio cholerae MZO-3]
 gi|124123334|gb|EAY42077.1| RNA polymerase-associated protein HepA [Vibrio cholerae MZO-3]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|15642502|ref|NP_232135.1| ATP-dependent helicase HepA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153822416|ref|ZP_01975083.1| RNA polymerase-associated protein HepA [Vibrio cholerae B33]
 gi|227082625|ref|YP_002811176.1| RNA polymerase-associated protein HepA [Vibrio cholerae M66-2]
 gi|229507436|ref|ZP_04396941.1| RNA polymerase associated protein RapA [Vibrio cholerae BX 330286]
 gi|229509639|ref|ZP_04399120.1| RNA polymerase associated protein RapA [Vibrio cholerae B33]
 gi|229516764|ref|ZP_04406210.1| RNA polymerase associated protein RapA [Vibrio cholerae RC9]
 gi|229527558|ref|ZP_04416950.1| RNA polymerase associated protein RapA [Vibrio cholerae 12129(1)]
 gi|229606942|ref|YP_002877590.1| ATP-dependent helicase HepA [Vibrio cholerae MJ-1236]
 gi|254851051|ref|ZP_05240401.1| RNA polymerase-associated protein rapA [Vibrio cholerae MO10]
 gi|255744516|ref|ZP_05418468.1| RNA polymerase associated protein RapA [Vibrio cholera CIRS 101]
 gi|262154660|ref|ZP_06028786.1| RNA polymerase associated protein RapA [Vibrio cholerae INDRE 91/1]
 gi|298500663|ref|ZP_07010467.1| RNA polymerase-associated protein rapA [Vibrio cholerae MAK 757]
 gi|41017807|sp|Q9KP70|RAPA_VIBCH RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|254789699|sp|C3LR47|RAPA_VIBCM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|9657088|gb|AAF95648.1| RNA polymerase-associated protein HepA [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|126520059|gb|EAZ77282.1| RNA polymerase-associated protein HepA [Vibrio cholerae B33]
 gi|227010513|gb|ACP06725.1| RNA polymerase-associated protein HepA [Vibrio cholerae M66-2]
 gi|229335190|gb|EEO00675.1| RNA polymerase associated protein RapA [Vibrio cholerae 12129(1)]
 gi|229345827|gb|EEO10799.1| RNA polymerase associated protein RapA [Vibrio cholerae RC9]
 gi|229353113|gb|EEO18052.1| RNA polymerase associated protein RapA [Vibrio cholerae B33]
 gi|229354941|gb|EEO19862.1| RNA polymerase associated protein RapA [Vibrio cholerae BX 330286]
 gi|229369597|gb|ACQ60020.1| RNA polymerase associated protein RapA [Vibrio cholerae MJ-1236]
 gi|254846756|gb|EET25170.1| RNA polymerase-associated protein rapA [Vibrio cholerae MO10]
 gi|255738041|gb|EET93434.1| RNA polymerase associated protein RapA [Vibrio cholera CIRS 101]
 gi|262030500|gb|EEY49138.1| RNA polymerase associated protein RapA [Vibrio cholerae INDRE 91/1]
 gi|297540832|gb|EFH76889.1| RNA polymerase-associated protein rapA [Vibrio cholerae MAK 757]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|292658861|gb|ADE34301.1| MIP05021p [Drosophila melanogaster]
          Length = 756

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 13/111 (11%)

Query: 40  VYYDEEKHWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-- 95
                +K        K+  L+ ++   KAN   +++       +  L++     +     
Sbjct: 645 SIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMR 704

Query: 96  ---------KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
                    +            I +      + G G+NL      +  F  
Sbjct: 705 LDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTFVPCFDF 755


>gi|262372046|ref|ZP_06065325.1| RNA helicase [Acinetobacter junii SH205]
 gi|262312071|gb|EEY93156.1| RNA helicase [Acinetobacter junii SH205]
          Length = 945

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            D K K + +I         +          R          L++D        +     
Sbjct: 478 KDLKHKKVLLIARSGPVVEALENALRLHAGIRTAMFHEGMSLLERDQAAAYFAEDSYGAQ 537

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +         G N Q+  + L+ F L  + +  +Q I R+    Q        + V YL+
Sbjct: 538 ILLCSEIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLDRIGQENRIQ---IHVPYLV 593

Query: 172 AQNTIDELVLQ 182
              T  E + +
Sbjct: 594 --GTAQERMFR 602


>gi|254507422|ref|ZP_05119557.1| Type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus 16]
 gi|219549678|gb|EED26668.1| Type III restriction enzyme, res subunit family [Vibrio
           parahaemolyticus 16]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    Q T
Sbjct: 594 QRIGRLD-----RIGQNRDIDIHVPYLQGT 618


>gi|167625696|ref|YP_001675990.1| ATP-dependent helicase HepA [Shewanella halifaxensis HAW-EB4]
 gi|189029431|sp|B0TVM8|RAPA_SHEHH RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|167355718|gb|ABZ78331.1| SNF2-related protein [Shewanella halifaxensis HAW-EB4]
          Length = 968

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 50  EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
            +   + K + +I  +A  A  +       +  +          +++D        E   
Sbjct: 498 FLKTNRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQETGG 557

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                       G N Q+  N++  F L  + +  +Q I R+      + G K  V ++ 
Sbjct: 558 AQALICSEIGSEGRNFQFASNLV-LFDLPLNPDLLEQRIGRLD-----RIGQKNDVEIHL 611

Query: 170 LIAQNTIDEL 179
               NT  E 
Sbjct: 612 PYLANTAQER 621


>gi|121591251|ref|ZP_01678550.1| RNA polymerase-associated protein HepA [Vibrio cholerae 2740-80]
 gi|121546897|gb|EAX57051.1| RNA polymerase-associated protein HepA [Vibrio cholerae 2740-80]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|254225905|ref|ZP_04919507.1| RNA polymerase-associated protein HepA [Vibrio cholerae V51]
 gi|125621531|gb|EAZ49863.1| RNA polymerase-associated protein HepA [Vibrio cholerae V51]
          Length = 969

 Score = 35.5 bits (80), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score = 35.5 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               T  +    ++++  G + +L A   +         G   +  + +  D E +   I
Sbjct: 278 HGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI--SGVTHVYNYDIPQDPESYVHRI 335

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKS 188
            R G                  +  N +D   V+++L  K 
Sbjct: 336 GRTGRAGHHGTSVT-------FVTPNEMDYLRVIEKLTKKR 369


>gi|310799699|gb|EFQ34592.1| hypothetical protein GLRG_09736 [Glomerella graminicola M1.001]
          Length = 696

 Score = 35.5 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 91  GRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
             +  +   +I+ + E    + +L A+     +GL+LQ       F  + W +  H    
Sbjct: 298 CHSEAERSVSIERFTEAGSGVEVLVANTNISLNGLDLQDQCYNGAFVGVEWSINAHI--- 354

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNT 175
              G  R  + G K  V  + L  ++T
Sbjct: 355 --QGAGRLVRVGQKHPVIFHMLKVKHT 379


>gi|226287723|gb|EEH43236.1| MIZ zinc finger protein [Paracoccidioides brasiliensis Pb18]
          Length = 515

 Score = 35.5 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 159 AGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 201
              KR   V  L+ ++++++LV Q    K    + ++  +K  
Sbjct: 232 LTQKRHFVVINLVRKHSVEQLVKQLQSRKIISSEQVIREMKNR 274


>gi|229513433|ref|ZP_04402897.1| RNA polymerase associated protein RapA [Vibrio cholerae TMA 21]
 gi|229349310|gb|EEO14266.1| RNA polymerase associated protein RapA [Vibrio cholerae TMA 21]
          Length = 969

 Score = 35.5 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
           [Saccoglossus kowalevskii]
          Length = 543

 Score = 35.5 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/176 (9%), Positives = 44/176 (25%), Gaps = 20/176 (11%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD-EKIKALEVIIEK 65
             +     L     +      KT          +     + +  +H  +K      ++++
Sbjct: 331 MPKNAEEMLDNVVEDGSLVTVKTTHL-----HHLMPHIPQKFIRIHSKDKAGKTLELVKR 385

Query: 66  ANAAP------------IIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLF 113
                                Y F  +          G    +     Q++ +G   +L 
Sbjct: 386 DVKCKIPVVVFCNKIDSCNWLYQFLKENNVSALKLNGGMNHKERYGLFQQFQKGIQNVLV 445

Query: 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
                             ++ F     + ++     R+G    + +G   ++ V+ 
Sbjct: 446 CTDIGSRGLD--TIRAQHVINFDFPHGMSDYIHRAGRVGRVGSQTSGHVTSLIVHK 499


>gi|258622799|ref|ZP_05717817.1| RNA polymerase-associated protein rapA [Vibrio mimicus VM573]
 gi|258584987|gb|EEW09718.1| RNA polymerase-associated protein rapA [Vibrio mimicus VM573]
          Length = 716

 Score = 35.5 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|257140696|ref|ZP_05588958.1| DEAD/DEAH box helicase:helicase, C-terminal [Burkholderia
           thailandensis E264]
          Length = 1139

 Score = 35.5 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 22/57 (38%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +N    P +    +    GL+  +  + +V ++L  +  + +Q   R+   + 
Sbjct: 905 VRDAFNSPFWPFMLNSTSIGQEGLDFHWYCSRVVHWNLPPNPIDLEQREGRVNRYKS 961


>gi|83720024|ref|YP_440662.1| DEAD/DEAH box helicase [Burkholderia thailandensis E264]
 gi|83653849|gb|ABC37912.1| DEAD/DEAH box helicase:Helicase, C-terminal [Burkholderia
           thailandensis E264]
          Length = 1151

 Score = 35.5 bits (80), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 22/57 (38%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +N    P +    +    GL+  +  + +V ++L  +  + +Q   R+   + 
Sbjct: 917 VRDAFNSPFWPFMLNSTSIGQEGLDFHWYCSRVVHWNLPPNPIDLEQREGRVNRYKS 973


>gi|153817993|ref|ZP_01970660.1| RNA polymerase-associated protein HepA [Vibrio cholerae NCTC 8457]
 gi|126511428|gb|EAZ74022.1| RNA polymerase-associated protein HepA [Vibrio cholerae NCTC 8457]
          Length = 962

 Score = 35.1 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               T  +    ++++  G + +L A   +         G   +  + +  D E +   I
Sbjct: 271 HGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI--SGVTHVYNYDIPQDPESYVHRI 328

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKS 188
            R G                  +  N +D   V+++L  K 
Sbjct: 329 GRTGRAGHHGTSVT-------FVTPNEMDYLRVIEKLTKKR 362


>gi|261211069|ref|ZP_05925358.1| RNA polymerase associated protein RapA [Vibrio sp. RC341]
 gi|260839570|gb|EEX66181.1| RNA polymerase associated protein RapA [Vibrio sp. RC341]
          Length = 969

 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|219118385|ref|XP_002179967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408224|gb|EEC48158.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 162

 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 52  HDEKI--KALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKI 109
           HDEK   +   +I+  A    ++  + F +                +    ++ +  G+ 
Sbjct: 17  HDEKQSRQKSLIILFFARIKTLLYMHTFLTKERVACLTLHSQLKQHEREQAVRAFQSGQT 76

Query: 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            LL A   +           + ++ +    +LE++     R G   Q          VY 
Sbjct: 77  SLLLATDIAARGIH--VANVSFVINYDFPGNLEQYIHRCGRAGRNGQGG-------TVYS 127

Query: 170 LIAQN 174
              +N
Sbjct: 128 FFTRN 132


>gi|153825799|ref|ZP_01978466.1| RNA polymerase-associated protein HepA [Vibrio cholerae MZO-2]
 gi|149740522|gb|EDM54637.1| RNA polymerase-associated protein HepA [Vibrio cholerae MZO-2]
          Length = 969

 Score = 35.1 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRDIDVY 611


>gi|315633347|ref|ZP_07888638.1| RNA polymerase-associated protein RapA [Aggregatibacter segnis ATCC
           33393]
 gi|315477847|gb|EFU68588.1| RNA polymerase-associated protein RapA [Aggregatibacter segnis ATCC
           33393]
          Length = 952

 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNS------------DLARLQ 85
             +            D +++ L   +++     ++V   +              +  R  
Sbjct: 457 HFLRELNANMAWWEFDPRVQWLIDFLKQHRQEKVLVICRYADTAIQLEQILREKEGIRSA 516

Query: 86  KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
               +   +++D        +     +         G N Q+  +++  F+L  + +  +
Sbjct: 517 VFHEKMSIVERDRAAAYFTQQENGAQVLLSSGIGSEGRNFQFACHLV-LFNLPENPDLLE 575

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + +Y     ++
Sbjct: 576 QCIGRLD-----RIGQTREIQIYQPYFADS 600


>gi|254497386|ref|ZP_05110187.1| ATP-dependent helicase HepA [Legionella drancourtii LLAP12]
 gi|254353391|gb|EET12125.1| ATP-dependent helicase HepA [Legionella drancourtii LLAP12]
          Length = 949

 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 63  IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCG 120
           I       I + ++F         AF +  T+ +       +   E     L        
Sbjct: 488 ICAKAKTAIALEHYFKLKAGIRSAAFHESLTIIERDRAAAYFAEQENGAQALICS-EIGS 546

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
            G N Q+  + LV F L  + +  +Q I R+      + G    + ++     NT  E +
Sbjct: 547 EGRNFQF-AHHLVLFDLPINPDLLEQRIGRLD-----RIGQAHDIEIHVPYLANTAQEKL 600

Query: 181 LQ 182
            +
Sbjct: 601 FR 602


>gi|260797928|ref|XP_002593952.1| hypothetical protein BRAFLDRAFT_68613 [Branchiostoma floridae]
 gi|229279185|gb|EEN49963.1| hypothetical protein BRAFLDRAFT_68613 [Branchiostoma floridae]
          Length = 606

 Score = 35.1 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 55  KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFA 114
            +   ++++  +          + +D       +  G++  +     + +  G++ ++ A
Sbjct: 1   MLVGSDLLVMFSPMKKGPPQVKWLAD------CYHAGKSAAQRRQIQKRFMSGELRIVVA 54

Query: 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR-------QAGFKRAVFV 167
             A              ++ +++    E + Q I R G   +         A       +
Sbjct: 55  TVAFGMGLDK--SDVRAIIHYNMPKSFENYVQEIGRAGRDGEPSHCHLFLNADGSDLCEL 112

Query: 168 YYLIAQNTIDELVLQRLRTK 187
                 N++D   +++L  K
Sbjct: 113 RRHTYGNSVDRTTVKKLLRK 132


>gi|332182176|gb|AEE17864.1| helicase domain-containing protein [Treponema brennaborense DSM
           12168]
          Length = 1137

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 52/173 (30%), Gaps = 15/173 (8%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKD 97
                   K  +    ++     +I  + +     +   F  +  R      +  +    
Sbjct: 721 DPKLNSIIKTIQSSVKKEHNRKIIIFTEFSDTADYLQEMFAKEKIRSMMYSSKVASKSGR 780

Query: 98  PCTIQEWNEGK--------IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIE 149
                 ++ G           +L A   +   G +L   G  +  + + ++     ++I+
Sbjct: 781 ETIRYSFDAGCPANLQVDDYDVLIAT-DAISEGFSLHRAGT-IYNYDIPYNPT---RVIQ 835

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDE--LVLQRLRTKSTIQDLLLNALKK 200
           R+G   +        +++Y      T +E     +    K  +   +L A  K
Sbjct: 836 RVGRINRVNKKMFDKLYIYNFFPTATGEEISHTAEISTFKMKLFQAILGADTK 888


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               T  +    ++++  G + +L A   +         G   +  + +  D E +   I
Sbjct: 271 HGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI--SGVTHVYNYDIPQDPESYVHRI 328

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKS 188
            R G                  +  N +D   V+++L  K 
Sbjct: 329 GRTGRAGHHGTSVT-------FVTPNEMDYLRVIEKLTKKR 362


>gi|219115952|ref|XP_002178771.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409538|gb|EEC49469.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 41/172 (23%), Gaps = 46/172 (26%)

Query: 2   KQYHKFQRELYCDLQGE--NIEAFNSASKTVKCLQLANGAVYYDEEKHW----------- 48
           + Y       +  L        A    +  ++  ++ N     +  +H            
Sbjct: 357 QYYRAIFEHNHAFLNIGATRNTAPKLMNIQMELRKVCNHPFLLEGVEHRETDRQFKEFSE 416

Query: 49  KEVHDEKIKALEVII----------------------EKANAAPIIVAYHFNSDLARLQK 86
           K + + K    +  +                       K     I++       L  + +
Sbjct: 417 KGLFENKAPEEQQRLLNEHGYIMTSGKMVLLDKLLPKLKQEGHKILIFSQMVKMLDLISE 476

Query: 87  AFPQGRTLD----------KDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQY 127
                              +   +I  + N+ +  +      + G G+NL  
Sbjct: 477 YCDLRDFRYERLDGRVRGTERQKSIDRFENDPESFIFLLSTRAGGVGINLTA 528


>gi|262166538|ref|ZP_06034275.1| RNA polymerase associated protein RapA [Vibrio mimicus VM223]
 gi|262026254|gb|EEY44922.1| RNA polymerase associated protein RapA [Vibrio mimicus VM223]
          Length = 947

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 514 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 571

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 572 QRIGRLD-----RIGQKRDIDVY 589


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 54/170 (31%), Gaps = 24/170 (14%)

Query: 39  AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AF 88
                +   +    D+K   L  ++E+ N   +IV         R+              
Sbjct: 210 PAETVKHVIYPVAEDQKSDLLRELLERVNYDSVIVFCRTKHRADRIAILLKRNNHAVAVL 269

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              RT  +    ++ +  G+  +L A   +           + ++ + +    E++   I
Sbjct: 270 HSNRTQREREDALKGFRNGRFEVLVATDIAARGLDI--ADVSHVINYDVPQHPEDYIHRI 327

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQN-----TIDELVLQRLRT-KSTIQD 192
            R G        F        ++A++     +I+  + +++   K    +
Sbjct: 328 GRTGRAAATGDAFT------LMVAEDSQHVQSIERFIGKKVERIKLENFN 371


>gi|109644380|ref|YP_659410.1| SNF2 family DNA/RNA helicase [Haloquadratum walsbyi DSM 16790]
 gi|109627347|emb|CAJ51105.1| superfamily II DNA/RNA helicases, SNF2 family [Haloquadratum
           walsbyi DSM 16790]
          Length = 1227

 Score = 35.1 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172
                +   G+NLQ     +V + L W+     Q + R+      + G     +V+    
Sbjct: 835 VVATDTLSEGVNLQDV-ETVVNYDLPWNPMRIVQRVGRVD-----RIGNTDDKYVHNFYP 888

Query: 173 QNTIDELV--LQRLRTKSTIQDLLLN 196
              I+  +  L+RL+ K +   L++ 
Sbjct: 889 DGDIEATIKLLKRLQAKISDIALVVG 914


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score = 35.1 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
               T  +    ++++  G + +L A   +         G   +  + +  D E +   I
Sbjct: 271 HGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDI--SGVTHVYNYDIPQDPESYVHRI 328

Query: 149 ERIGVTRQRQAGFKRAVFVYYLIAQNTID-ELVLQRLRTKS 188
            R G                  +  N +D   V+++L  K 
Sbjct: 329 GRTGRAGHHGTSVT-------FVTPNEMDYLRVIEKLTKKR 362


>gi|329121753|ref|ZP_08250370.1| aminopeptidase C [Dialister micraerophilus DSM 19965]
 gi|327468223|gb|EGF13709.1| aminopeptidase C [Dialister micraerophilus DSM 19965]
          Length = 443

 Score = 35.1 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLLNALKKETIHV 205
           YL+  +   DE + Q L  K  +   ++ A +KE IH+
Sbjct: 396 YLVMSDAWFDEYMYQALINKKYLSKEVVEAYEKEPIHL 433


>gi|298250280|ref|ZP_06974084.1| type III restriction protein res subunit [Ktedonobacter racemifer
           DSM 44963]
 gi|297548284|gb|EFH82151.1| type III restriction protein res subunit [Ktedonobacter racemifer
           DSM 44963]
          Length = 461

 Score = 35.1 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 26/182 (14%)

Query: 12  YCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPI 71
              L   +I+A  +     + L++                 + K   L+ ++ +     I
Sbjct: 294 LMRLSAFDIQARQALLARQRLLEIT-------------WNCEGKFVVLDELLREHAGERI 340

Query: 72  IVAYH-----FNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126
           ++        +      L         + +    +  +  G   +L              
Sbjct: 341 LIFTESNAVAYMISQQWLIPVISHETGVAERKHILDAFQNGTYQVLVTSKVLNEG--IDV 398

Query: 127 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE-LVLQRLR 185
               I +      +  E+ Q + RI   ++ +      V V     + TI+E    +R  
Sbjct: 399 PAAKIAIVLGGGSNKREYIQRLGRILRKQEEREAVLFEVLV-----RKTIEEGKAQRRHV 453

Query: 186 TK 187
            K
Sbjct: 454 RK 455


>gi|313892243|ref|ZP_07825836.1| aminopeptidase C [Dialister microaerophilus UPII 345-E]
 gi|313119381|gb|EFR42580.1| aminopeptidase C [Dialister microaerophilus UPII 345-E]
          Length = 443

 Score = 35.1 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 169 YLIAQNTI-DELVLQRLRTKSTIQDLLLNALKKETIHV 205
           YL+  +   DE + Q L  K  +   ++ A +KE IH+
Sbjct: 396 YLVMSDAWFDEYMYQALINKKYLSKEVVEAYEKEPIHL 433


>gi|84488838|ref|YP_447070.1| Hef nuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372157|gb|ABC56427.1| predicted ERCC4-like helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 752

 Score = 35.1 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 37/213 (17%)

Query: 14  DLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEV----IIEKANAA 69
            L+ +  +A  S     K     N AV        +++   K+K L      II+    +
Sbjct: 311 KLEKKKTKAAKSLKNDYKF----NKAVLLTRRYKQQDIDHPKMKRLIELLNQIIDDDKKS 366

Query: 70  PIIVAYHFN------------------SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            +IV   F                       +  +   +G +  K   TI  +      +
Sbjct: 367 KVIVFSQFRDTTKSIYENCNKNNLKALRFYGQASRENDKGLSQKKQIETINAFKNEDYNI 426

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           L    +    G+++    + ++ +          Q   R G     +         + L+
Sbjct: 427 LI-STSVAEEGIDIPSV-DYVILYEPVPSEIRMIQRKGRTGRKHSGEM--------FILM 476

Query: 172 AQNTIDELVLQRLRTKSTIQ-DLLLNALKKETI 203
            + T+DE      + K     + + N+ KKE  
Sbjct: 477 TKGTLDESYYWSSQRKEKAMRNNVYNSHKKEIT 509


>gi|323496129|ref|ZP_08101189.1| ATP-dependent helicase HepA [Vibrio sinaloensis DSM 21326]
 gi|323318873|gb|EGA71824.1| ATP-dependent helicase HepA [Vibrio sinaloensis DSM 21326]
          Length = 969

 Score = 35.1 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + V+    Q T
Sbjct: 594 QRIGRLD-----RIGQHRDIDVHVPYLQGT 618


>gi|326692836|ref|ZP_08229841.1| Superfamily II DNA/RNA helicase, SNF2 family protein [Leuconostoc
           argentinum KCTC 3773]
          Length = 385

 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 11/146 (7%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
           +  K++ L+ + E+      I+ Y ++++L  L +A                        
Sbjct: 251 NKAKLEWLDSVKEEYAKDKTIIFYTYDNELDLLNEALKDYTVGH----VNGHEYTPGGDF 306

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
                 S   GL L    + + +            +       R  + G    +   YL+
Sbjct: 307 TLIQITSG-SGLTLNEYKHAIWWSLPDSS------IDFDQSKYRNYRIGQDTKITRDYLV 359

Query: 172 AQNTIDELVLQRLRTKSTIQDLLLNA 197
              TID+ +   L  K      +   
Sbjct: 360 VHGTIDDSIWNALILKQNFNAEMFED 385


>gi|255318374|ref|ZP_05359607.1| RNA polymerase-associated protein RapA [Acinetobacter
           radioresistens SK82]
 gi|255304366|gb|EET83550.1| RNA polymerase-associated protein RapA [Acinetobacter
           radioresistens SK82]
          Length = 942

 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            D K   + +I         +          R          L++D        E     
Sbjct: 475 KDLKHNKVLLIARSGPVVEALENALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQ 534

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +         G N Q+  + L+ F L  + +  +Q I R+    Q+       + V YL+
Sbjct: 535 ILLCSEIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLDRIGQQNRIQ---IHVPYLV 590

Query: 172 AQNTIDELVLQ 182
              T  E + +
Sbjct: 591 --GTAQERMFR 599


>gi|148651929|ref|YP_001279022.1| ATP-dependent helicase HepA [Psychrobacter sp. PRwf-1]
 gi|148571013|gb|ABQ93072.1| helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 960

 Score = 35.1 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
           ++D       ++    +L         G N Q+  +++++  L  + +  +Q I R+   
Sbjct: 528 ERDQAAAFFADDAGAQILLCS-EIGSEGRNFQFASHLILW-DLPANPDTLEQRIGRLD-- 583

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G  + + ++    Q T  E + +
Sbjct: 584 ---RIGQSQKITLHVPYVQGTAQERMYK 608


>gi|53130294|emb|CAG31476.1| hypothetical protein RCJMB04_6n5 [Gallus gallus]
          Length = 470

 Score = 35.1 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 12/55 (21%)

Query: 1   MKQY---HKFQRELYCDLQGENIEAFNS---------ASKTVKCLQLANGAVYYD 43
           +K Y    K QRE Y  +  ++I+  NS          +  ++  +  N    +D
Sbjct: 395 VKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCNHPYLFD 449


>gi|262378604|ref|ZP_06071761.1| RNA helicase [Acinetobacter radioresistens SH164]
 gi|262299889|gb|EEY87801.1| RNA helicase [Acinetobacter radioresistens SH164]
          Length = 945

 Score = 35.1 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            D K   + +I         +          R          L++D        E     
Sbjct: 478 KDLKHNKVLLIARSGPVVEALENALRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQ 537

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +         G N Q+  + L+ F L  + +  +Q I R+    Q+       + V YL+
Sbjct: 538 ILLCSEIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLDRIGQQNRIQ---IHVPYLV 593

Query: 172 AQNTIDELVLQ 182
              T  E + +
Sbjct: 594 --GTAQERMFR 602


>gi|37680394|ref|NP_935003.1| hypothetical protein VV2210 [Vibrio vulnificus YJ016]
 gi|37199141|dbj|BAC94974.1| hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1080

 Score = 35.1 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 22/62 (35%)

Query: 100 TIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA 159
               +N    P + +  +    GL+  +    +V ++L  +  + +Q   R+   +    
Sbjct: 902 VRDAFNSPFRPFVLSSTSIGQEGLDFHWYCRRVVHWNLPNNPIDIEQREGRVNRYKSLVV 961

Query: 160 GF 161
             
Sbjct: 962 RQ 963


>gi|224097394|ref|XP_002334613.1| predicted protein [Populus trichocarpa]
 gi|222873504|gb|EEF10635.1| predicted protein [Populus trichocarpa]
          Length = 51

 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167
           +     +   GLN+    + +    LWW+        E   V R  +    R V V
Sbjct: 1   MLTSLKAGNLGLNMVAACHEI-LLDLWWNPTT-----EDQAVDRAHRIAQTRPVTV 50


>gi|260810143|ref|XP_002599863.1| hypothetical protein BRAFLDRAFT_127645 [Branchiostoma floridae]
 gi|229285146|gb|EEN55875.1| hypothetical protein BRAFLDRAFT_127645 [Branchiostoma floridae]
          Length = 807

 Score = 35.1 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 83  RLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 142
            L   +  G++  +     + +  G++ ++ A  A              ++ +++    E
Sbjct: 174 WLADCYHAGKSAAQRRQIQKRFMSGELRIVVATVAFGMGLDK--SDVRAIIHYNMPKSFE 231

Query: 143 EHQQMIERIGVTRQR-------QAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187
            + Q I R G   +         A       +      N++D   +++L  K
Sbjct: 232 NYVQEIGRAGRDGKPSHCHLFLNADGSDLCELRRHTYGNSVDRTTVKKLLRK 283


>gi|258625825|ref|ZP_05720704.1| RNA polymerase-associated protein rapA [Vibrio mimicus VM603]
 gi|258582063|gb|EEW06933.1| RNA polymerase-associated protein rapA [Vibrio mimicus VM603]
          Length = 969

 Score = 35.1 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSIIERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVY 168
           Q I R+      + G KR + VY
Sbjct: 594 QRIGRLD-----RIGQKRNIDVY 611


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score = 35.1 bits (79), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 35   LANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIV---------AYHFNSDLARLQ 85
            +  GA    ++  ++     K   L  I+ +     I+             F S+     
Sbjct: 1269 VVGGACSDVQQTIYEVNKFNKRSKLMEILREDANGTIVFVETKRGADFLASFLSETEFPT 1328

Query: 86   KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
             +    R   +    ++++  GK+ +L A   +             +V F +  ++ ++ 
Sbjct: 1329 TSIHGDRLQSQREQALRDFKTGKMKVLIATSVAARGLDI--KNVKHVVNFDMPNNIADYV 1386

Query: 146  QMIERIGV 153
              I R G 
Sbjct: 1387 HRIGRTGR 1394


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score = 35.1 bits (79), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 15/153 (9%)

Query: 18  ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHF 77
           + ++     +K  K ++L N  +   E K    V  ++         + +  P +     
Sbjct: 350 QVVDVLEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTL----- 404

Query: 78  NSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL-QYGGNILVFFS 136
                         +   +    +QE+  GK+P+L A   +        Q   + + F  
Sbjct: 405 ---------CIHGDKNQGERDWVLQEFKAGKMPILLATDVAARGLEFWVQVHVDDIKFVI 455

Query: 137 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169
            +      +  + RIG T +R        F  +
Sbjct: 456 NYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTH 488


>gi|301511543|ref|ZP_07236780.1| ATP-dependent helicase HepA [Acinetobacter baumannii AB058]
          Length = 628

 Score = 35.1 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 148 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 207

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 208 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 260

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 261 RIGQENRIQIHVPYLMGTAQERMFR 285


>gi|226952510|ref|ZP_03822974.1| ATP-dependent helicase HepA [Acinetobacter sp. ATCC 27244]
 gi|226836737|gb|EEH69120.1| ATP-dependent helicase HepA [Acinetobacter sp. ATCC 27244]
          Length = 942

 Score = 35.1 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            D K K + +I         +          R          L++D        +     
Sbjct: 475 KDLKHKKVLLIARSGPVVEALENALRLHAGIRTAMFHEGMSLLERDQAAAYFAEDSYGAQ 534

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +         G N Q+  + L+ F L  + +  +Q I R+      + G +  + ++   
Sbjct: 535 ILLCSEIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD-----RIGQENRIQIHVPY 588

Query: 172 AQNTIDELVLQ 182
              T  E + +
Sbjct: 589 LMGTAQERMFR 599


>gi|159029663|emb|CAO87741.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 500

 Score = 35.1 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 50/143 (34%), Gaps = 10/143 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYH-----FNSDLARLQKAFPQGRTLDK 96
           + E K        K++ L  +I +     I++  +     +    + L  A      + +
Sbjct: 309 HRESKEISSGTQGKLRVLAELICEHYPEAILIFTNDNATVYRISESFLIPAITHQTPVKE 368

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               +  + +G+  +L                  I +  S        ++ I+R+G   +
Sbjct: 369 RHEILTRFRQGEYKILVTSHVLNEGVD--VPEARIAIILSGTGS---TREYIQRLGRVLR 423

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL 179
           +     +   +Y +IA+NT +E 
Sbjct: 424 KGQQEDKRAILYEVIAENTTEEK 446


>gi|294649804|ref|ZP_06727206.1| ATP-dependent helicase HepA [Acinetobacter haemolyticus ATCC 19194]
 gi|292824287|gb|EFF83088.1| ATP-dependent helicase HepA [Acinetobacter haemolyticus ATCC 19194]
          Length = 942

 Score = 35.1 bits (79), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL 111
            D K K + +I         +          R          L++D        +     
Sbjct: 475 KDLKHKKVLLIARSGPVVEALENALRLHAGIRTAMFHEGMSLLERDQAAAYFAEDSYGAQ 534

Query: 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171
           +         G N Q+  + L+ F L  + +  +Q I R+      + G +  + ++   
Sbjct: 535 ILLCSEIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD-----RIGQENRIQIHVPY 588

Query: 172 AQNTIDELVLQ 182
              T  E + +
Sbjct: 589 LMGTAQERMFR 599


>gi|210616855|ref|ZP_03291258.1| hypothetical protein CLONEX_03479 [Clostridium nexile DSM 1787]
 gi|210149623|gb|EEA80632.1| hypothetical protein CLONEX_03479 [Clostridium nexile DSM 1787]
          Length = 1089

 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 2/114 (1%)

Query: 92  RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-FSLWWDLEEHQQMIE- 149
               K    + +       +   +      GL+  +  +   + +      +    MI+ 
Sbjct: 836 PPALKREEWMHQKASQGTKVFITNAKCVSTGLDFAFRYHGKDYNYPTIIFYQVGYDMIKI 895

Query: 150 RIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 203
                R  +   K+    +YL+++ TI    +Q + TK      +      E +
Sbjct: 896 WQASRRHYRLNQKKECRTFYLVSECTIQIDAVQLVATKEVATSSIQGQFSAEGL 949


>gi|260770998|ref|ZP_05879927.1| RNA polymerase associated protein RapA [Vibrio furnissii CIP
           102972]
 gi|260614235|gb|EEX39425.1| RNA polymerase associated protein RapA [Vibrio furnissii CIP
           102972]
          Length = 969

 Score = 34.7 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  + LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ASQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G K  + ++    + T
Sbjct: 594 QRIGRLD-----RIGQKNDIDIHVPYLKGT 618


>gi|315179044|gb|ADT85958.1| RNA polymerase-associated protein HepA [Vibrio furnissii NCTC
           11218]
          Length = 969

 Score = 34.7 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  + LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ASQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G K  + ++    + T
Sbjct: 594 QRIGRLD-----RIGQKNDIDIHVPYLKGT 618


>gi|9633897|ref|NP_051975.1| gp086L [Rabbit fibroma virus]
 gi|11134120|sp|Q9Q8Z2|NTP1_RFVKA RecName: Full=Nucleoside triphosphatase I; AltName: Full=Nucleoside
           triphosphate phosphohydrolase I; Short=NPH I
 gi|6578616|gb|AAF17970.1|AF170722_88 gp086L [Rabbit fibroma virus]
          Length = 632

 Score = 34.7 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)

Query: 86  KAFPQGRTLDKDPCTIQEWNE------GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                 RT +    ++ E+N+        I       +         +  N +    + W
Sbjct: 408 YIEFSSRTKNTRVQSVAEFNKRENTNGDLIKTCVFSLSGGEGISF--FSINDIFILDMTW 465

Query: 140 DLEEHQQMIERIGVTRQR--QAGFKRAVFVYYLIAQ-----NTIDELVLQRLRTKSTIQD 192
           +    +Q+I R             +R V+V+++IA+      T+DE +L  +R KS    
Sbjct: 466 NEASLRQIIGRAIRLNSHVLTPEHRRYVYVHFIIARLSNGDPTVDEDLLDIIRNKSKEFT 525

Query: 193 LLLNALKKETIH 204
            L    K  +I 
Sbjct: 526 QLFKVFKHTSIE 537


>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 410

 Score = 34.7 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 82  ARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDL 141
                        D+    I  + +G + +L A   +   G++L    + ++ + +    
Sbjct: 270 QIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAAR-GIDLPDVSH-VINYDMPRSA 327

Query: 142 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT--KSTIQDLLLNALK 199
           + +   I R            +      L+  +  D+ ++ R+    K  I++  +  L+
Sbjct: 328 DVYLHRIGRTARAG-------KKGNAISLVEAH--DQTMMDRVARYVKEEIKERFIKELR 378


>gi|312218557|emb|CBX98502.1| similar to SNF2 family helicase/ATPase [Leptosphaeria maculans]
          Length = 1047

 Score = 34.7 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 57  KALEVIIEKANAAPIIVAYHFNSDLARLQ----KAFPQGRTLDKDPCTIQEWNEGKIPLL 112
           + L  +      A  I+   F+  L  L+           ++ +     +  ++  +   
Sbjct: 819 RHLLYLRANDPGAKSIIFSQFSDFLVVLRGALRSFKIGASSIVERDGIARFKSDPSVETF 878

Query: 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
                S   GLNL      +       +     Q I R+    Q++A ++ +V
Sbjct: 879 LLDAKSDSSGLNLVN-ATYVFLCEPLINPALELQAIARVHRIGQKRAIYEISV 930


>gi|17230443|ref|NP_486991.1| hypothetical protein all2951 [Nostoc sp. PCC 7120]
 gi|17132045|dbj|BAB74650.1| all2951 [Nostoc sp. PCC 7120]
          Length = 517

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 12/166 (7%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY-----HFNSDLARLQKAFPQGRTLDK 96
           + E K      D K++ L  ++ K     +++        +      L  A      + +
Sbjct: 310 HREAKEIALGTDSKLRILANLLAKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++ EG+   L A                I +  S        ++ I+R+G   +
Sbjct: 370 RHEILTKFREGEYNTLVASHVLNEGVD--VPAAAIAIILSGTGS---TREYIQRLGRILR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL--VLQRLRTKSTIQDLLLNALKK 200
           +     +   +Y +IA++T +E     +R   K     ++  + K 
Sbjct: 425 KGNIQNKQAILYEVIAEDTSEENTSARRRGEDKKANLQVVYGSGKG 470


>gi|239501124|ref|ZP_04660434.1| ATP-dependent helicase HepA [Acinetobacter baumannii AB900]
 gi|193077966|gb|ABO12880.2| RNA helicase [Acinetobacter baumannii ATCC 17978]
          Length = 942

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 462 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 521

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 522 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 574

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 575 RIGQENRIQIHVPYLMGTAQERMFR 599


>gi|169795159|ref|YP_001712952.1| ATP-dependent helicase HepA [Acinetobacter baumannii AYE]
 gi|294840139|ref|ZP_06784822.1| ATP-dependent helicase HepA [Acinetobacter sp. 6013113]
 gi|294860705|ref|ZP_06798474.1| ATP-dependent helicase HepA [Acinetobacter sp. 6013150]
 gi|301348012|ref|ZP_07228753.1| ATP-dependent helicase HepA [Acinetobacter baumannii AB056]
 gi|301597066|ref|ZP_07242074.1| ATP-dependent helicase HepA [Acinetobacter baumannii AB059]
 gi|169148086|emb|CAM85949.1| RNA helicase [Acinetobacter baumannii AYE]
          Length = 945

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 465 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 524

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 525 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 578 RIGQENRIQIHVPYLMGTAQERMFR 602


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
              ++  +    ++ + +G++ +L A   +             +  F L    E +   I
Sbjct: 306 HGNKSQGQRERALRAFRDGEVRVLVATDVAARGLDI--PDVKHVYNFDLPNVPENYVHRI 363

Query: 149 ERIGVTRQ 156
            R     +
Sbjct: 364 GRTARAGR 371


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 24/127 (18%)

Query: 89  PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMI 148
                  +    ++++  GK  +L A   +           + +  F +  D E +   I
Sbjct: 271 HGDMDQQRRNSIMKQFKNGKTQVLVATDVAARGLDI--SDVSHVFNFDIPRDPESYVHRI 328

Query: 149 ERIGVTRQRQAGFK----RAVFVYYLIAQ-----------NTIDELVLQRLRTKSTIQDL 193
            R G   +          R + +  LI Q            T++E + +  + K      
Sbjct: 329 GRTGRAGKSGISITFVTFREIKLLKLIEQVSARRMERMEVPTLEEAIEE-QQRK------ 381

Query: 194 LLNALKK 200
           ++++L++
Sbjct: 382 VIDSLRE 388


>gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 451

 Score = 34.7 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
             DK    + ++ E KI LL A   +           + ++ + L  D+E++   I R  
Sbjct: 312 PQDKRQRLLSDFQENKITLLIATDVAARGLHI--ADVSHVINYDLPQDVEDYVHRIGRTA 369

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
                          Y     + I+E + Q++
Sbjct: 370 RFGASGVAISFICEEYAYSMPD-IEEYIEQKI 400


>gi|213158175|ref|YP_002320226.1| RNA helicase [Acinetobacter baumannii AB0057]
 gi|215482709|ref|YP_002324907.1| RNA polymerase-associated protein rapA(ATP-dependenthelicase hepA)
           [Acinetobacter baumannii AB307-0294]
 gi|213057335|gb|ACJ42237.1| RNA helicase [Acinetobacter baumannii AB0057]
 gi|213987009|gb|ACJ57308.1| RNA polymerase-associated protein rapA(ATP-dependenthelicase hepA)
           [Acinetobacter baumannii AB307-0294]
          Length = 942

 Score = 34.7 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 462 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 521

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 522 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 574

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 575 RIGQENRIQIHVPYLMGTAQERMFR 599


>gi|260785482|ref|XP_002587790.1| hypothetical protein BRAFLDRAFT_60404 [Branchiostoma floridae]
 gi|229272943|gb|EEN43801.1| hypothetical protein BRAFLDRAFT_60404 [Branchiostoma floridae]
          Length = 436

 Score = 34.7 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/94 (7%), Positives = 27/94 (28%), Gaps = 10/94 (10%)

Query: 7   FQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYY--------DEEKHWKEVHDEKIKA 58
             +++         +     +  ++  + AN    +                 +  K+  
Sbjct: 316 LMKDIDVVNGAGKSDKMRLLNILMQLRKCANHPYLFDGAEPGPPYTTDTHLVQNSGKMCI 375

Query: 59  LEVIIE--KANAAPIIVAYHFNSDLARLQKAFPQ 90
           L+ ++   +A  + +++       L  L+     
Sbjct: 376 LDKLLPRLQAEGSRVLIFSQMTRMLDILEDYCIW 409


>gi|260549689|ref|ZP_05823906.1| RNA helicase [Acinetobacter sp. RUH2624]
 gi|260407206|gb|EEX00682.1| RNA helicase [Acinetobacter sp. RUH2624]
          Length = 945

 Score = 34.7 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 465 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 524

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 525 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 578 RIGQENRIQIHVPYLMGTAQERMFR 602


>gi|184158989|ref|YP_001847328.1| ATP-dependent helicase HepA [Acinetobacter baumannii ACICU]
 gi|183210583|gb|ACC57981.1| Superfamily II DNA/RNA helicase, SNF2 family [Acinetobacter
           baumannii ACICU]
          Length = 942

 Score = 34.7 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 462 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 521

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 522 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 574

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 575 RIGQENRIQIHVPYLMGTAQERMFR 599


>gi|294840605|ref|ZP_06785288.1| ATP-dependent helicase HepA [Acinetobacter sp. 6014059]
 gi|322508971|gb|ADX04425.1| hepA [Acinetobacter baumannii 1656-2]
 gi|323518956|gb|ADX93337.1| ATP-dependent helicase HepA [Acinetobacter baumannii TCDC-AB0715]
          Length = 945

 Score = 34.7 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 465 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 524

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 525 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 578 RIGQENRIQIHVPYLMGTAQERMFR 602


>gi|260556641|ref|ZP_05828859.1| RNA helicase [Acinetobacter baumannii ATCC 19606]
 gi|260409900|gb|EEX03200.1| RNA helicase [Acinetobacter baumannii ATCC 19606]
          Length = 945

 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 465 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 524

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 525 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 578 RIGQENRIQIHVPYLMGTAQERMFR 602


>gi|169632855|ref|YP_001706591.1| ATP-dependent helicase HepA [Acinetobacter baumannii SDF]
 gi|169151647|emb|CAP00434.1| RNA helicase [Acinetobacter baumannii]
          Length = 945

 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 465 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 524

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 525 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 577

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 578 RIGQENRIQIHVPYLMGTAQERMFR 602


>gi|115401368|ref|XP_001216272.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190213|gb|EAU31913.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 962

 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 13/120 (10%)

Query: 27  SKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK 86
           +K  K  Q+ +G     E+   K V   +      I+                 ++    
Sbjct: 853 AKLSKITQIVSGW--MQEDSKVKVVIFTQFLRFIDILAGICREKKWRFARLTGTMS---- 906

Query: 87  AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
                    ++    +      + +L A   + G GL++    +  +   LWW+    QQ
Sbjct: 907 ------VAAREESLTEFRENENVQVLIASLKAGGVGLDM-SMASKCIIVDLWWNEGIQQQ 959


>gi|284161344|ref|YP_003399967.1| DEAD/DEAH box helicase [Archaeoglobus profundus DSM 5631]
 gi|284011341|gb|ADB57294.1| DEAD/DEAH box helicase domain protein [Archaeoglobus profundus DSM
           5631]
          Length = 736

 Score = 34.7 bits (78), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 28  KTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA 87
           K  K  ++ +  +    E       +   +    +I +   +  + A  F     +  + 
Sbjct: 346 KLEKLKEIVSSQLKEKPESRIIVFTN--FRDTAEVISRELQSMGVPAVRFV---GQANRE 400

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
             +G    +    ++ +  G I +L A  +    GL++    +++VF+            
Sbjct: 401 NDRGLRQREQVEIVERFRAGDIKVLVAT-SVGEEGLDIPEV-DLVVFYEAIPS------- 451

Query: 148 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
            E   + R+ + G K+   +  L+ + T DE        K    
Sbjct: 452 -EIRSIQRKGRTGRKKEGRIVVLVTKGTRDEAYFYISLRKERAM 494


>gi|269103545|ref|ZP_06156242.1| RNA polymerase associated protein RapA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163443|gb|EEZ41939.1| RNA polymerase associated protein RapA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 972

 Score = 34.7 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW 138
            +  R          +++D        + +   +         G N Q+  N LV F L 
Sbjct: 529 REGIRASVFHEGMSIIERDKAAAYFAQDEEGAQVLLCSEIGSEGRNFQF-SNQLVMFDLP 587

Query: 139 WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            + +  +Q I R+      + G KR + ++    + T
Sbjct: 588 NNPDLLEQRIGRLD-----RIGQKRDIEIHVPHLEGT 619


>gi|126642498|ref|YP_001085482.1| ATP-dependent helicase HepA [Acinetobacter baumannii ATCC 17978]
          Length = 857

 Score = 34.7 bits (78), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIV------------AYHFNSDLARLQKAFPQGRTLDKDPC 99
           +D ++  L  I+ K      ++                          F +G +L +   
Sbjct: 377 NDPRVPWLMEILRKELKHKKVLLIARSGPVVESLESALRLHAGIRTAMFHEGMSLLERDQ 436

Query: 100 TIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQR 157
               +        +L         G N Q+  + L+ F L  + +  +Q I R+      
Sbjct: 437 AAAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVLEQRIGRLD----- 489

Query: 158 QAGFKRAVFVYYLIAQNTIDELVLQ 182
           + G +  + ++      T  E + +
Sbjct: 490 RIGQENRIQIHVPYLMGTAQERMFR 514


>gi|86147830|ref|ZP_01066136.1| ATP-dependent helicase HepA [Vibrio sp. MED222]
 gi|85834357|gb|EAQ52509.1| ATP-dependent helicase HepA [Vibrio sp. MED222]
          Length = 969

 Score = 34.7 bits (78), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQLRDIDIHVPYLKGT 618


>gi|218708390|ref|YP_002416011.1| ATP-dependent helicase HepA [Vibrio splendidus LGP32]
 gi|254789701|sp|B7VIC2|RAPA_VIBSL RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|218321409|emb|CAV17359.1| RNA polymerase associated protein rapA [Vibrio splendidus LGP32]
          Length = 969

 Score = 34.7 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQLRDIDIHVPYLKGT 618


>gi|54307623|ref|YP_128643.1| ATP-dependent helicase HepA [Photobacterium profundum SS9]
 gi|56749604|sp|Q6LV34|RAPA_PHOPR RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|46912046|emb|CAG18841.1| putative RNA polymerase-associated protein HepA [Photobacterium
           profundum SS9]
          Length = 972

 Score = 34.7 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 52  HDEKIKALEVIIEKANAAPIIVAYH-----------FNSDLARLQKAFPQGRTLDKDPCT 100
            D ++  L  +++      ++V                         F +G ++      
Sbjct: 490 FDPRVNWLLEMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIDRDKA 549

Query: 101 IQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ 158
              +   +    +L         G N Q+  N LV F L  + +  +Q I R+      +
Sbjct: 550 AAYFAQEDDGAQVLLCS-EIGSEGRNFQF-SNQLVMFDLPNNPDLLEQRIGRLD-----R 602

Query: 159 AGFKRAVFVYYLIAQNT 175
            G +R + ++    + T
Sbjct: 603 IGQQRDIEIHVPHLEGT 619


>gi|84394047|ref|ZP_00992784.1| ATP-dependent helicase HepA [Vibrio splendidus 12B01]
 gi|84375333|gb|EAP92243.1| ATP-dependent helicase HepA [Vibrio splendidus 12B01]
          Length = 969

 Score = 34.7 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 88  FPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 145
           F +G ++ +       +   EG   +L         G N Q+  N LV F L ++ +  +
Sbjct: 536 FHEGMSILERDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-ANQLVMFDLPFNPDLLE 593

Query: 146 QMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
           Q I R+      + G  R + ++    + T
Sbjct: 594 QRIGRLD-----RIGQLRDIDIHVPYLKGT 618


>gi|74272713|gb|ABA01152.1| eukaryotic translation initiation factor [Chlamydomonas incerta]
          Length = 148

 Score = 34.7 bits (78), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + +I       +        +      A       +     ++E+  G   +L   
Sbjct: 12  LAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITT 71

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   ++++ + L    E +   I R G   ++             + ++ 
Sbjct: 72  DLLARGIDVQQV--SLVINYDLPTQPENYLHRIGRSGRFGRKGVA-------INFVTKD- 121

Query: 176 IDELVLQRLRT 186
            DE +LQ ++ 
Sbjct: 122 -DERMLQDIQR 131


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 19/173 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKA 87
           G    +E  +    H  K+  L+ +IE+      I+  +                     
Sbjct: 228 GHRIKEELFYPSNDH--KMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGL 285

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   K    ++E+ +G + +L A   +             +  F L  + E++   
Sbjct: 286 LTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHI--PQVTHVFNFDLPNEAEDYVHR 343

Query: 148 IERIGVTRQRQAGFKRAVFVY--YLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           I R G           A   Y   L A   I+E +   +         LL  L
Sbjct: 344 IGRTGRAGASGNSISFACEEYAINLPA---IEEYIEHSIPQSDYDASALLEDL 393


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 19/173 (10%)

Query: 38  GAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----------RLQKA 87
           G    +E  +    H  K+  L+ +IE+      I+  +                     
Sbjct: 228 GHRIKEELFYPSNDH--KMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGL 285

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 147
                   K    ++E+ +G + +L A   +             +  F L  + E++   
Sbjct: 286 LTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHI--PQVTHVFNFDLPNEAEDYVHR 343

Query: 148 IERIGVTRQRQAGFKRAVFVY--YLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198
           I R G           A   Y   L A   I+E +   +         LL  L
Sbjct: 344 IGRTGRAGASGNSISFACEEYAINLPA---IEEYIEHSIPQSDYDASALLEDL 393


>gi|113968919|ref|YP_732712.1| ATP-dependent helicase HepA [Shewanella sp. MR-4]
 gi|123029975|sp|Q0HMR2|RAPA_SHESM RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|113883603|gb|ABI37655.1| SNF2-related protein [Shewanella sp. MR-4]
          Length = 968

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I   A+ A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVL 181
               Q+T  E +L
Sbjct: 611 LPYLQDTAQERLL 623


>gi|117919027|ref|YP_868219.1| ATP-dependent helicase HepA [Shewanella sp. ANA-3]
 gi|189029435|sp|A0KSP4|RAPA_SHESA RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|117611359|gb|ABK46813.1| SNF2-related protein [Shewanella sp. ANA-3]
          Length = 968

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 49  KEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGK 108
           + +   + K + +I   A+ A  +       +  +          +++D        E  
Sbjct: 497 EFLKSHRSKKVLIIASGADTALSLEEALRTREGIQATVFHEGMSIIERDKAGAYFAQEEG 556

Query: 109 IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168
                        G N Q+  + LV F L  + +  +Q I R+      + G K  + ++
Sbjct: 557 GAQALICSEIGSEGRNFQF-ASHLVLFDLPLNPDLLEQRIGRLD-----RIGQKNDIQIH 610

Query: 169 YLIAQNTIDELVL 181
               Q+T  E +L
Sbjct: 611 LPYLQDTAQERLL 623


>gi|302926399|ref|XP_003054288.1| hypothetical protein NECHADRAFT_31148 [Nectria haematococca mpVI
           77-13-4]
 gi|256735229|gb|EEU48575.1| hypothetical protein NECHADRAFT_31148 [Nectria haematococca mpVI
           77-13-4]
          Length = 1071

 Score = 34.7 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 7/125 (5%)

Query: 37  NGAVYYDEEK-HWKEVHDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQGRTL 94
           N  +   E       V  E   + E I+   N   P+I A  F     +      +G   
Sbjct: 486 NHFMDKGEGSATRVIVFSEYRDSAEDIVRMLNTHRPLIKASVFV---GQADGKRGEGMKQ 542

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            +    I+ +  G+  +L A  +    GL++     I+  +          Q + R G  
Sbjct: 543 AQQIAAIERFKRGEFNVLVAT-SIGEEGLDIGQVDLIVC-YDSSASPIRMLQRMGRTGRK 600

Query: 155 RQRQA 159
           R    
Sbjct: 601 RAGNI 605


>gi|225026194|ref|ZP_03715386.1| hypothetical protein EUBHAL_00435 [Eubacterium hallii DSM 3353]
 gi|224956445|gb|EEG37654.1| hypothetical protein EUBHAL_00435 [Eubacterium hallii DSM 3353]
          Length = 345

 Score = 34.7 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 157 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197
           RQ    + V ++  + ++T D  + Q +  K      ++ +
Sbjct: 17  RQGNHNKKVHIFRYVTESTFDSYMWQLIENKQKFISQIMTS 57


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score = 34.7 bits (78), Expect = 8.7,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR---------TL 94
           ++  +    D+K++A+E II  +    +I+  +    + RL     QG            
Sbjct: 231 DQHFYLLTEDQKLEAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQGHKIVMLSGDVIQ 290

Query: 95  DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 154
            K    +Q + +G   +L A   +           + ++ ++L    +++   I R G  
Sbjct: 291 QKREKYLQRFKDGHASVLVATDVAGRGIH--VDDVSHVINYTLPDQPDDYVHRIGRTGRA 348

Query: 155 RQRQAG 160
            Q    
Sbjct: 349 GQTGIS 354


>gi|260772175|ref|ZP_05881092.1| RNA polymerase associated protein RapA [Vibrio metschnikovii CIP
           69.14]
 gi|260613042|gb|EEX38244.1| RNA polymerase associated protein RapA [Vibrio metschnikovii CIP
           69.14]
          Length = 948

 Score = 34.3 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 79  SDLARLQKAFPQGRTLDKDPCTIQE-WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137
            +  R          +D+D         EG   +L         G N Q+  + LV F L
Sbjct: 507 REGIRATVFHEGMSIIDRDKAAAYFAQEEGGAQVLICS-EIGSEGRNFQF-AHQLVMFDL 564

Query: 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            ++ +  +Q I R+      + G +  + +Y    Q T
Sbjct: 565 PFNPDLLEQRIGRLD-----RIGQENDIDIYVPYLQGT 597


>gi|126459220|ref|YP_001055498.1| type III restriction enzyme, res subunit [Pyrobaculum calidifontis
           JCM 11548]
 gi|126248941|gb|ABO08032.1| type III restriction enzyme, res subunit [Pyrobaculum calidifontis
           JCM 11548]
          Length = 647

 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 18/139 (12%)

Query: 51  VHDEKIKALEVIIEKAN--AAPIIVAYHFNSDLARLQKAFPQGRTLDK--------DPCT 100
               KI  +  I+ +     + ++V   F      L K   +     +            
Sbjct: 478 KSKAKIPVVLQIVSREVALGSKVLVFTQFIDQAEELYKRLREAGIQAELITSEEGGREVA 537

Query: 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160
           ++ ++ GK  ++            L  G ++              +      V R  +A 
Sbjct: 538 LRRFSAGKSRVVVTTTV-------LDEGVDVPDADVAVVVSGTGSRRQMIQRVGRVVRAS 590

Query: 161 FKRAV-FVYYLIAQNTIDE 178
             + V  VY ++ + TI+E
Sbjct: 591 PGKKVARVYEIVTRGTIEE 609


>gi|221133961|ref|ZP_03560266.1| ATP-dependent helicase HepA [Glaciecola sp. HTCC2999]
          Length = 944

 Score = 34.3 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 62  IIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCG 120
           +I ++    + +A        +    F +  ++ +       +++ +    L        
Sbjct: 493 LICRSQRTVLQLAEFIKKLTGQHLPVFHENMSIIERDRAAHYFSDPENSAPLLLCSEIGS 552

Query: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
            G N Q+    L+ F L    +  +Q I R+      + G  + V ++    ++T
Sbjct: 553 EGRNFQF-AQHLILFDLPAHPDLLEQRIGRLD-----RIGQSQTVNIHVPYVEHT 601


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score = 34.3 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 12/123 (9%)

Query: 44  EEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRT 93
           E+        EK K L  ++ K      IV         +L K               ++
Sbjct: 220 EQSLHYIAKSEKPKLLIELLGKHKGERAIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKS 279

Query: 94  LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153
             +    I  + EGK+ +L A   +             +  F L    E +   I R   
Sbjct: 280 QGQRERAIVAFREGKVTVLVATDVAARGLDI--PDVKHVYNFDLPNVPENYVHRIGRTAR 337

Query: 154 TRQ 156
              
Sbjct: 338 AGA 340


>gi|260807957|ref|XP_002598774.1| hypothetical protein BRAFLDRAFT_212976 [Branchiostoma floridae]
 gi|229284049|gb|EEN54786.1| hypothetical protein BRAFLDRAFT_212976 [Branchiostoma floridae]
          Length = 791

 Score = 34.3 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 2/18 (11%), Positives = 5/18 (27%)

Query: 25  SASKTVKCLQLANGAVYY 42
             +  ++  QL       
Sbjct: 649 VLAVLLRLRQLCCHPSLV 666


>gi|159905661|ref|YP_001549323.1| Hef nuclease [Methanococcus maripaludis C6]
 gi|159887154|gb|ABX02091.1| ERCC4 domain protein [Methanococcus maripaludis C6]
          Length = 751

 Score = 34.3 bits (77), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 32/188 (17%)

Query: 33  LQLANGA--VYYDEEKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNS--------- 79
            ++ N    +   +  +  ++   K + +  I+++       II+   +           
Sbjct: 310 KEITNDPRFIQVVKNLNELDIEHPKYEKMLEILKEILKENEKIIIFAQYRDTVQKIVDLL 369

Query: 80  --------DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 131
                             +G +  +    I+ +       +    +    G+++  G N 
Sbjct: 370 SENGIEAIMFVGQSNKDGKGMSQTEQAKAIERFKSDVN--VLVSTSVSEEGIDI-SGVNY 426

Query: 132 LVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191
           ++F+          Q   R       Q        V  LIA+ T DE   +    K    
Sbjct: 427 VLFYEPVPSEIRMIQRRGRAARGEGGQ--------VIVLIAEKTRDEGYYRAGLAKEKNM 478

Query: 192 DLLLNALK 199
             +L  ++
Sbjct: 479 KNILKNMQ 486


>gi|62006047|dbj|BAC65799.2| mKIAA1498 protein [Mus musculus]
          Length = 1495

 Score = 34.3 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G  + + +Y L++ N+I+E +L+
Sbjct: 352 WCDRIGRCKDIHIYRLVSGNSIEEKLLK 379


>gi|14017853|dbj|BAB47447.1| KIAA1818 protein [Homo sapiens]
          Length = 1157

 Score = 34.3 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 17/28 (60%)

Query: 155 RQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
              + G  + + +Y L++ N+I+E +L+
Sbjct: 3   WCDRIGRCKDIHIYRLVSGNSIEEKLLK 30


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score = 34.3 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + +I       +        +      A       +     ++E+  G   +L   
Sbjct: 274 LAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITT 333

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   ++++ + L  + E +   I R G   ++             +  + 
Sbjct: 334 DLLARGIDVQQV--SLVINYDLPNNPENYLHRIGRSGRFGRKGVA-------INFVTND- 383

Query: 176 IDELVLQRLRT 186
            DE +LQ ++ 
Sbjct: 384 -DERLLQDIQR 393


>gi|75907174|ref|YP_321470.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75700899|gb|ABA20575.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 517

 Score = 34.3 bits (77), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 42  YDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY-----HFNSDLARLQKAFPQGRTLDK 96
           + E K      D K++ L  ++ K     +++        +      L  A      + +
Sbjct: 310 HREAKEIALGTDSKLRVLANLLTKHYPERVLIFTADNATVYKISQDLLIPAITHQTPVKE 369

Query: 97  DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 156
               + ++ EG+   L A               +I +  S        ++ I+R+G   +
Sbjct: 370 RHEILTKFREGEYNTLVASHVLNEGVD--VPAASIAIILSGTGS---TREYIQRLGRILR 424

Query: 157 RQAGFKRAVFVYYLIAQNTIDEL 179
           +     +   +Y +IA++T +E 
Sbjct: 425 KGNIQNKQAILYEVIAEDTSEEN 447


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score = 34.3 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 93  TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152
              K    +  + +G++ +L     +         G   +  + L +D E++   I R  
Sbjct: 292 PQKKRETLLNRFQKGQLEILVVTDVAARGLHI--DGVKYVYNYDLPFDAEDYVHRIGRTA 349

Query: 153 VTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184
              +       A   Y +   + I+  + Q++
Sbjct: 350 RLGEEGDAISFACERYAMSLPD-IEAYIEQKI 380


>gi|297619461|ref|YP_003707566.1| ERCC4 domain protein [Methanococcus voltae A3]
 gi|297378438|gb|ADI36593.1| ERCC4 domain protein [Methanococcus voltae A3]
          Length = 822

 Score = 34.3 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 80  DLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW 139
                     +G +  +    I ++    I +L    +    G+++    N +VF+    
Sbjct: 391 MFVGQSNKDGKGMSQKEQSKAIAKFKSD-IDVLV-STSVSEEGMDI-SAVNYVVFYEPVP 447

Query: 140 DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199
                 Q   R+               V  LIA+ T DE   +    K      +L  ++
Sbjct: 448 SEIRFIQRRGRVMRGEGG--------EVIILIAKGTRDEGYYRAAIAKEKSMKNILKDMQ 499

Query: 200 K 200
           K
Sbjct: 500 K 500


>gi|89095086|ref|ZP_01168013.1| probable ATP-dependent helicase HepA [Oceanospirillum sp. MED92]
 gi|89080647|gb|EAR59892.1| probable ATP-dependent helicase HepA [Oceanospirillum sp. MED92]
          Length = 957

 Score = 34.3 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 88  FPQGRTLDKDPCTIQEWNEGKIPL-LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146
           F +G +L +       + + +    L         G N Q+  + +V F L  + +  +Q
Sbjct: 523 FHEGMSLLERDRAAAYFADPEEGAQLLICSEIGSEGRNFQF-AHHMVMFDLPLNPDLLEQ 581

Query: 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
            I R+      + G  R V ++      +  E++L+
Sbjct: 582 RIGRLD-----RIGQVRDVNIHVPFFTGSAQEVLLK 612


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score = 34.3 bits (77), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 56  IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 115
           +   + +I       +               A       +     ++E+  G   +L   
Sbjct: 275 LAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 334

Query: 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175
                     Q   ++++ + L    E +   I R G   ++             + ++ 
Sbjct: 335 DLLARGIDVQQV--SLVINYDLPTQPENYLHRIGRSGRFGRKGVA-------INFVTKD- 384

Query: 176 IDELVLQRLRT 186
            DE +LQ ++ 
Sbjct: 385 -DERMLQDIQR 394


>gi|262368494|ref|ZP_06061823.1| RNA helicase [Acinetobacter johnsonii SH046]
 gi|262316172|gb|EEY97210.1| RNA helicase [Acinetobacter johnsonii SH046]
          Length = 945

 Score = 34.3 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 87  AFPQGRTLDKDPCTIQEW--NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEH 144
            F +G +L +       +        +L         G N Q+  + L+ F L  + +  
Sbjct: 512 MFHEGMSLLERDQASAYFAEESYGAQILLCS-EIGSEGRNFQF-ASDLILFDLPANPDVL 569

Query: 145 QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182
           +Q I R+    Q        + V YLI   T  E + +
Sbjct: 570 EQRIGRLDRIGQENRIQ---IHVPYLI--GTAQERMFR 602


>gi|119471850|ref|XP_001258227.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
 gi|134034072|sp|A1DNF9|DBP4_NEOFI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119406379|gb|EAW16330.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
          Length = 810

 Score = 34.3 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 58/205 (28%), Gaps = 17/205 (8%)

Query: 5   HKFQRELYCDLQGENIEAFNSASKT---VKCLQ-LANGAVYYDEEKHWKEVHDEKIKALE 60
            K        LQ     A +  + +    K  Q      +    +  W  +         
Sbjct: 236 KKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILWSFIRSNLKSKTM 295

Query: 61  VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
           V +        +     +             +        +  +++ K  +LF+   +  
Sbjct: 296 VFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSKHCVLFSTDVAAR 355

Query: 121 HGLNLQYGG-NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179
               L +   + ++      D + +   + R     +             L    + +E 
Sbjct: 356 ---GLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAV--------LFLDPSEEEG 404

Query: 180 VLQRLRTKSTIQDLL-LNALKKETI 203
           +L+RL  K    + + + A K+++I
Sbjct: 405 MLKRLEQKKVPIEKINIKANKQQSI 429


>gi|170718602|ref|YP_001783804.1| ATP-dependent helicase HepA [Haemophilus somnus 2336]
 gi|189029418|sp|B0URM0|RAPA_HAES2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|168826731|gb|ACA32102.1| SNF2-related protein [Haemophilus somnus 2336]
          Length = 966

 Score = 34.3 bits (77), Expect = 10.0,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 63/190 (33%), Gaps = 26/190 (13%)

Query: 2   KQYHKFQRELYCDLQGENIEAFNSASKTVKCL--------QL-----ANGAVYYDEEKHW 48
           + YH+ +     DL  +   A N      +          Q+     A+   +  + +  
Sbjct: 436 RIYHQIK----LDLPTQYQNAINVLKMLGEIKDPELFYPEQIFQKMNADATWWRFDPRVD 491

Query: 49  KEVHDEKIKALEVIIEKANAAPI---IVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWN 105
             +H  K    E I+     A     +       +  R          +++D  +     
Sbjct: 492 WLIHLVKSLREEKILVICQDAITATQLEQALREKEGIRSAVFHENMSIIERDRASAYFAQ 551

Query: 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165
           + +   +    +    G N Q+  ++++F  L  + +  +Q I R+      + G +R +
Sbjct: 552 QEEGAQVLLSSSIGSEGRNFQFACHLVLFH-LPNNPDLLEQCIGRLD-----RIGQRRDI 605

Query: 166 FVYYLIAQNT 175
            +Y     +T
Sbjct: 606 QIYVPCFADT 615


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.128    0.325 

Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,410,677,295
Number of Sequences: 13984884
Number of extensions: 47203589
Number of successful extensions: 231348
Number of sequences better than 10.0: 9869
Number of HSP's better than 10.0 without gapping: 8307
Number of HSP's successfully gapped in prelim test: 1562
Number of HSP's that attempted gapping in prelim test: 205683
Number of HSP's gapped (non-prelim): 12919
length of query: 205
length of database: 4,792,584,752
effective HSP length: 132
effective length of query: 73
effective length of database: 2,946,580,064
effective search space: 215100344672
effective search space used: 215100344672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 77 (34.3 bits)